Query 027209
Match_columns 226
No_of_seqs 94 out of 96
Neff 3.3
Searched_HMMs 29240
Date Mon Mar 25 10:30:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027209.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027209hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3d8l_A ORF12; lactococcal phag 33.7 8.4 0.00029 29.1 -0.1 23 182-204 2-25 (91)
2 2rfp_A Putative NTP pyrophosph 9.3 1.7E+02 0.0059 24.4 2.5 21 198-218 131-151 (171)
3 3nl9_A Putative NTP pyrophosph 7.3 2.4E+02 0.0081 23.1 2.5 21 198-218 131-151 (171)
4 1xf5_L Protein L, monoclonal a 6.7 64 0.0022 23.9 -1.1 17 195-211 23-39 (80)
5 2ptl_A Protein L; binding prot 6.1 91 0.0031 23.0 -0.6 18 194-211 21-38 (78)
6 3lg8_A A-type ATP synthase sub 5.9 2.9E+02 0.0099 20.5 2.1 25 190-215 49-73 (106)
7 1vz6_A Ornithine acetyl-transf 5.8 1.8E+02 0.0061 27.2 1.1 15 3-17 173-189 (393)
8 1hz6_A Protein L; four strande 5.8 90 0.0031 22.7 -0.8 17 195-211 16-32 (72)
9 3qth_A Uncharacterized protein 5.7 1.2E+02 0.0043 25.1 -0.1 13 206-218 159-171 (176)
10 2k0q_A Putative uncharacterize 4.8 1.5E+02 0.0051 22.0 -0.1 22 197-218 19-41 (74)
No 1
>3d8l_A ORF12; lactococcal phage P2, viral protein; 2.90A {Lactococcus phage SK1}
Probab=33.69 E-value=8.4 Score=29.07 Aligned_cols=23 Identities=35% Similarity=0.673 Sum_probs=19.1
Q ss_pred CCCCchh-hhhccCCCCCCCCCcc
Q 027209 182 EKPLSNA-KLREMSGSNIFADEKV 204 (226)
Q Consensus 182 eK~lS~A-KlkEmSGsDIFADgK~ 204 (226)
+|+||.| |+|-++|.|+|-.-|+
T Consensus 2 akqlstarkfkmitgkdlfqqqka 25 (91)
T 3d8l_A 2 AKQLSTARKFKMITGKDLFQQQKA 25 (91)
T ss_dssp CCCCCHHHHHHHHHSSCHHHHHHH
T ss_pred cchhhhhhhhhhhccHHHHHHHHH
Confidence 4899988 8999999999975554
No 2
>2rfp_A Putative NTP pyrophosphohydrolase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 1.74A {Exiguobacterium sibiricum} PDB: 3mqu_A 3nl9_A
Probab=9.30 E-value=1.7e+02 Score=24.44 Aligned_cols=21 Identities=29% Similarity=0.213 Sum_probs=17.8
Q ss_pred CCCCCcccccccCCCcccCCC
Q 027209 198 IFADEKVESRDYFGGVRKPPG 218 (226)
Q Consensus 198 IFADgK~~~Rd~~ggvrkPPG 218 (226)
+|.|||+-.|..-|=|-||||
T Consensus 131 l~~dGkp~~r~~dgKvlK~~~ 151 (171)
T 2rfp_A 131 LGPDGQPIFRESDQKVMKPDG 151 (171)
T ss_dssp CCTTSSCCBCTTTCCBCCCTT
T ss_pred cCCCCCeeecCCCCceeCCCC
Confidence 788999988877778899987
No 3
>3nl9_A Putative NTP pyrophosphohydrolase; structural genomics, joint center for structural genomics, J protein structure initiative; 1.78A {Exiguobacterium sibiricum 255-15}
Probab=7.27 E-value=2.4e+02 Score=23.08 Aligned_cols=21 Identities=29% Similarity=0.213 Sum_probs=16.5
Q ss_pred CCCCCcccccccCCCcccCCC
Q 027209 198 IFADEKVESRDYFGGVRKPPG 218 (226)
Q Consensus 198 IFADgK~~~Rd~~ggvrkPPG 218 (226)
+|.|||+-.|+.=|-|=|||+
T Consensus 131 l~~dgk~i~~~~dgKvlK~~~ 151 (171)
T 3nl9_A 131 LGPDGQPIFRESDQKVMKPDG 151 (171)
T ss_dssp CCTTSSCCBCTTTTCBCCCTT
T ss_pred cCCCCCeeeCCCCCcccCCCC
Confidence 467888887776678888886
No 4
>1xf5_L Protein L, monoclonal antibody 19D9D6 light chain; crystal packing, FAB, peptide complex, immune SYS; 2.60A {Finegoldia magna} PDB: 1xct_L 1xcq_L
Probab=6.69 E-value=64 Score=23.91 Aligned_cols=17 Identities=35% Similarity=0.626 Sum_probs=12.7
Q ss_pred CCCCCCCCcccccccCC
Q 027209 195 GSNIFADEKVESRDYFG 211 (226)
Q Consensus 195 GsDIFADgK~~~Rd~~g 211 (226)
-|-||||||.+.-.+-|
T Consensus 23 ~nli~adgktqtaefkg 39 (80)
T 1xf5_L 23 VNLIFADGKIQTAEFKG 39 (80)
T ss_dssp EEEEETTSCEEEEEEEE
T ss_pred EEEEEecCceEeeeecC
Confidence 46699999988766553
No 5
>2ptl_A Protein L; binding protein(immunoglobulin L chain); NMR {Finegoldia magna} SCOP: d.15.7.1
Probab=6.06 E-value=91 Score=22.98 Aligned_cols=18 Identities=22% Similarity=0.503 Sum_probs=13.1
Q ss_pred CCCCCCCCCcccccccCC
Q 027209 194 SGSNIFADEKVESRDYFG 211 (226)
Q Consensus 194 SGsDIFADgK~~~Rd~~g 211 (226)
--|-|||||+.+.-.+-|
T Consensus 21 kanli~adg~tqtaefkg 38 (78)
T 2ptl_A 21 KANLIFANGSTQTAEFKG 38 (78)
T ss_dssp EEEEECSSSCCEEEEEEE
T ss_pred EEEEEEccCceeeeeecC
Confidence 346799999988766654
No 6
>3lg8_A A-type ATP synthase subunit E; archaea, peripheral stalk, hydrolase, structural protein, TR protein; 4.10A {Methanocaldococcus jannaschii}
Probab=5.94 E-value=2.9e+02 Score=20.45 Aligned_cols=25 Identities=20% Similarity=0.159 Sum_probs=14.9
Q ss_pred hhccCCCCCCCCCcccccccCCCccc
Q 027209 190 LREMSGSNIFADEKVESRDYFGGVRK 215 (226)
Q Consensus 190 lkEmSGsDIFADgK~~~Rd~~ggvrk 215 (226)
+++.+|.++--. ..++.|+.|||.=
T Consensus 49 ~~~~~g~~~~v~-~~~~~~~~GGvil 73 (106)
T 3lg8_A 49 VENATKKVTVLK-KGEPVDIAGGCII 73 (106)
T ss_dssp HHHHSSSCCCCC-CCCCCSSSCBCBC
T ss_pred HHHHhCCeEEEE-eCCCccccccEEE
Confidence 555666655322 1235799999863
No 7
>1vz6_A Ornithine acetyl-transferase; clavulanic acid, N-acetyl- ornithine, N-acetyl-glutamate, antibiotic; 2.75A {Streptomyces clavuligerus} SCOP: d.154.1.2 PDB: 1vz7_A 1vz8_A
Probab=5.85 E-value=1.8e+02 Score=27.25 Aligned_cols=15 Identities=20% Similarity=0.514 Sum_probs=12.6
Q ss_pred hhhhcce--eeEEEeec
Q 027209 3 KMVHQNL--MLAIVITE 17 (226)
Q Consensus 3 ~~~~~~~--~~~~~~~~ 17 (226)
-|+|+|+ ||+++.|.
T Consensus 173 GMI~PnMATML~fi~TD 189 (393)
T 1vz6_A 173 GMLEPDMATLLTFFATD 189 (393)
T ss_dssp SSCCCCCCCCEEEEEEE
T ss_pred ccCCCcccceeEEEEec
Confidence 3999996 89999884
No 8
>1hz6_A Protein L; four stranded beta-sheet with central alpha helix, binds KAP chain of immunoglobulins, protein binding; 1.70A {Finegoldia magna} SCOP: d.15.7.1 PDB: 1hz5_A 1k53_A 1k51_A 1k52_A 1jml_A 1k50_A 2jzp_A 2kac_A 1kh0_A 1ymh_E 1mhh_E* 1hez_E 1ynt_E
Probab=5.77 E-value=90 Score=22.72 Aligned_cols=17 Identities=24% Similarity=0.530 Sum_probs=12.4
Q ss_pred CCCCCCCCcccccccCC
Q 027209 195 GSNIFADEKVESRDYFG 211 (226)
Q Consensus 195 GsDIFADgK~~~Rd~~g 211 (226)
-|-|||||+...-.+-|
T Consensus 16 anlifadg~tqtaefkg 32 (72)
T 1hz6_A 16 ANLIFANGSTQTAEFKG 32 (72)
T ss_dssp EEEECTTSCEEEEEEEE
T ss_pred EEEEEecCceeeeeeee
Confidence 35699999987766554
No 9
>3qth_A Uncharacterized protein; DINB/YFIT-like putative metalloenzymes, structural genomics, center for structural genomics, JCSG; HET: MSE; 2.20A {Colwellia psychrerythraea}
Probab=5.68 E-value=1.2e+02 Score=25.09 Aligned_cols=13 Identities=31% Similarity=0.450 Sum_probs=10.1
Q ss_pred ccccCCCcccCCC
Q 027209 206 SRDYFGGVRKPPG 218 (226)
Q Consensus 206 ~Rd~~ggvrkPPG 218 (226)
-|||+|..+=|||
T Consensus 159 K~Dylg~~~yp~g 171 (176)
T 3qth_A 159 KGDFDGIHQYPKG 171 (176)
T ss_dssp HHHHHSCCBCCCC
T ss_pred chhhccCCCCCCC
Confidence 3788888888886
No 10
>2k0q_A Putative uncharacterized protein COPK; copper, heavy metal resistance, open barrel, plasmid- encoded, metal binding protein; NMR {Cupriavidus metallidurans} PDB: 2km0_A 2lel_A 3dso_A 3dsp_A 3n7d_A 3n7e_A
Probab=4.79 E-value=1.5e+02 Score=21.97 Aligned_cols=22 Identities=32% Similarity=0.676 Sum_probs=18.3
Q ss_pred CCCCCCcccccccCCC-cccCCC
Q 027209 197 NIFADEKVESRDYFGG-VRKPPG 218 (226)
Q Consensus 197 DIFADgK~~~Rd~~gg-vrkPPG 218 (226)
-||-|||-.--|-+|. +|-+||
T Consensus 19 yiFKDGKMamEdk~Gra~~m~~G 41 (74)
T 2k0q_A 19 HVFKDGKMGMENKFGKSMNMPEG 41 (74)
T ss_dssp EEETTSCEEEECTTSCEECCCBT
T ss_pred EEEcCCceehhhhcCceEEcCCC
Confidence 5899999998898885 777776
Done!