BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 027210
         (226 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3PSQ|A Chain A, Crystal Structure Of Spy0129, A Streptococcus Pyogenes
           Class B Sortase Involved In Pilus Biogenesis
 pdb|3PSQ|B Chain B, Crystal Structure Of Spy0129, A Streptococcus Pyogenes
           Class B Sortase Involved In Pilus Biogenesis
          Length = 206

 Score = 29.6 bits (65), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 27/61 (44%), Gaps = 5/61 (8%)

Query: 106 KKIGVHYDRIEARVYYDDKRLTSVPLT----PFYQGHKNTSYLNPVFEGQQILLGGALRD 161
           KK GV +D + A +  D     +V  T    P  QG  N  Y+N   EG+  L G    D
Sbjct: 20  KKKGVQFDDLLA-INSDVMAWLTVKGTHIDYPIVQGENNLEYINKSVEGEYSLSGSVFLD 78

Query: 162 Y 162
           Y
Sbjct: 79  Y 79


>pdb|1XOC|A Chain A, The Structure Of The Oligopeptide-Binding Protein, Appa,
           From Bacillus Subtilis In Complex With A Nonapeptide
          Length = 520

 Score = 28.9 bits (63), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 40/74 (54%), Gaps = 12/74 (16%)

Query: 80  LTEFNLTSNNNLNYKLALNITIRNPNKKIGVHYD-RIEARV-YYDDKRLT--------SV 129
           L  F   ++  LN KL+L  +I+  +   G+ YD +I+  V ++D K LT        SV
Sbjct: 52  LYSFLTKTDEKLNVKLSLAESIKELDG--GLAYDVKIKKGVKFHDGKELTADDVVFTYSV 109

Query: 130 PLTPFYQGHKNTSY 143
           PL+  Y+G + ++Y
Sbjct: 110 PLSKDYKGERGSTY 123


>pdb|3KS7|A Chain A, Crystal Structure Of Putative Peptide:n-Glycosidase F
           (Pngase F) (Yp_210507.1) From Bacteroides Fragilis Nctc
           9343 At 2.30 A Resolution
 pdb|3KS7|B Chain B, Crystal Structure Of Putative Peptide:n-Glycosidase F
           (Pngase F) (Yp_210507.1) From Bacteroides Fragilis Nctc
           9343 At 2.30 A Resolution
 pdb|3KS7|C Chain C, Crystal Structure Of Putative Peptide:n-Glycosidase F
           (Pngase F) (Yp_210507.1) From Bacteroides Fragilis Nctc
           9343 At 2.30 A Resolution
 pdb|3KS7|D Chain D, Crystal Structure Of Putative Peptide:n-Glycosidase F
           (Pngase F) (Yp_210507.1) From Bacteroides Fragilis Nctc
           9343 At 2.30 A Resolution
          Length = 397

 Score = 28.9 bits (63), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 11/82 (13%)

Query: 137 GHKNTSYLN----PVFEGQQILLGGAL--RDYNKENNAGVFSIDVKLKLKVRFKLGKIKT 190
           GHKN         PVFE   +         +YN+ +  GV+ +     +  R  L KI  
Sbjct: 4   GHKNLPAKGDLHIPVFENVNVRFSPDTYPDNYNEADGTGVYHL-----VNGRIILKKITL 58

Query: 191 PKFKPTIECDLKVPLNSSNGRF 212
           P++K  +   LKV L S+  R+
Sbjct: 59  PEYKRNVSVSLKVTLASNGDRW 80


>pdb|2DLL|A Chain A, Solution Structure Of The Irf Domain Of Human Interferon
           Regulator Factors 4
          Length = 121

 Score = 28.5 bits (62), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 4/50 (8%)

Query: 160 RDYNKENNAGVFSIDVKLKLKVRFKLGKIKTPKFKPTIECDLKVPLNSSN 209
           +DYN+E +A +F      K K R  + K   P +K  + C     LN SN
Sbjct: 45  QDYNREEDAALFKAWALFKGKFREGIDKPDPPTWKTRLRC----ALNKSN 90


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.139    0.415 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,198,585
Number of Sequences: 62578
Number of extensions: 228576
Number of successful extensions: 429
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 427
Number of HSP's gapped (non-prelim): 6
length of query: 226
length of database: 14,973,337
effective HSP length: 95
effective length of query: 131
effective length of database: 9,028,427
effective search space: 1182723937
effective search space used: 1182723937
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)