Query 027210
Match_columns 226
No_of_seqs 143 out of 859
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 06:36:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027210.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027210hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03160 uncharacterized prote 100.0 1.9E-36 4.2E-41 253.0 26.5 163 52-225 49-216 (219)
2 PF03168 LEA_2: Late embryogen 99.5 8.6E-13 1.9E-17 96.4 10.5 98 98-200 1-100 (101)
3 smart00769 WHy Water Stress an 98.6 1.4E-06 3.1E-11 64.0 11.8 61 89-150 11-72 (100)
4 PF07092 DUF1356: Protein of u 97.8 0.0012 2.6E-08 55.6 14.4 81 67-149 98-180 (238)
5 COG5608 LEA14-like dessication 97.7 0.0024 5.2E-08 50.1 14.0 111 67-188 29-141 (161)
6 PF12751 Vac7: Vacuolar segreg 97.4 0.0027 5.8E-08 56.9 11.7 35 92-127 347-381 (387)
7 PLN03160 uncharacterized prote 96.5 0.059 1.3E-06 45.2 11.7 90 46-143 46-147 (219)
8 COG4698 Uncharacterized protei 91.1 0.79 1.7E-05 37.1 6.2 39 39-80 10-48 (197)
9 TIGR03602 streptolysinS bacter 88.5 0.14 3.1E-06 32.2 0.1 8 31-38 24-31 (56)
10 PF10177 DUF2371: Uncharacteri 80.7 3.1 6.6E-05 32.5 4.3 30 37-69 35-64 (141)
11 PF06072 Herpes_US9: Alphaherp 79.7 0.54 1.2E-05 31.0 -0.1 6 29-34 28-33 (60)
12 PF11906 DUF3426: Protein of u 76.9 16 0.00036 28.1 7.6 58 73-131 48-106 (149)
13 PF14155 DUF4307: Domain of un 71.0 40 0.00088 25.0 9.9 29 120-151 71-101 (112)
14 KOG3950 Gamma/delta sarcoglyca 69.1 71 0.0015 27.4 9.8 23 90-112 105-127 (292)
15 PRK13183 psbN photosystem II r 60.2 12 0.00026 23.4 2.7 22 46-67 11-32 (46)
16 PF09624 DUF2393: Protein of u 58.7 82 0.0018 24.2 9.9 51 70-129 47-97 (149)
17 CHL00020 psbN photosystem II p 58.5 10 0.00022 23.4 2.1 28 46-76 8-35 (43)
18 TIGR02745 ccoG_rdxA_fixG cytoc 56.2 1.7E+02 0.0037 27.2 12.1 19 133-151 382-400 (434)
19 PF09911 DUF2140: Uncharacteri 56.0 17 0.00036 29.7 3.8 30 39-71 2-31 (187)
20 PRK05529 cell division protein 55.7 24 0.00053 30.1 5.0 43 71-114 59-128 (255)
21 PF06637 PV-1: PV-1 protein (P 54.3 21 0.00045 32.4 4.3 39 23-62 10-49 (442)
22 TIGR02588 conserved hypothetic 54.2 95 0.0021 23.6 10.7 49 50-106 12-62 (122)
23 PF02468 PsbN: Photosystem II 52.1 12 0.00026 23.1 1.7 22 46-67 8-29 (43)
24 PF08113 CoxIIa: Cytochrome c 49.8 11 0.00024 21.8 1.3 15 49-63 10-24 (34)
25 PRK10893 lipopolysaccharide ex 48.8 1.5E+02 0.0032 24.2 10.2 20 66-86 37-56 (192)
26 PRK07718 fliL flagellar basal 48.3 40 0.00086 26.1 4.7 14 111-124 63-76 (142)
27 PF05473 Herpes_UL45: UL45 pro 47.9 54 0.0012 27.0 5.6 7 29-35 42-48 (200)
28 PF01102 Glycophorin_A: Glycop 47.3 10 0.00022 28.8 1.2 27 51-77 75-101 (122)
29 PF11322 DUF3124: Protein of u 47.0 1.3E+02 0.0028 23.0 7.8 55 88-145 18-74 (125)
30 PF06024 DUF912: Nucleopolyhed 46.8 25 0.00054 25.7 3.1 22 43-64 64-85 (101)
31 PF13807 GNVR: G-rich domain o 46.0 14 0.00031 25.6 1.7 16 8-23 39-54 (82)
32 cd01324 cbb3_Oxidase_CcoQ Cyto 45.3 18 0.00039 22.8 1.9 23 46-69 12-34 (48)
33 PF04573 SPC22: Signal peptida 44.9 1E+02 0.0023 24.8 6.7 11 65-76 32-42 (175)
34 PRK06531 yajC preprotein trans 44.6 14 0.0003 27.7 1.5 12 58-70 13-24 (113)
35 KOG3927 Na+/K+ ATPase, beta su 44.1 31 0.00068 30.4 3.8 36 50-87 55-93 (300)
36 PF07787 DUF1625: Protein of u 42.2 30 0.00066 29.3 3.4 18 50-67 231-248 (248)
37 PF12505 DUF3712: Protein of u 42.0 68 0.0015 24.0 5.0 27 91-118 98-124 (125)
38 PRK00523 hypothetical protein; 41.5 34 0.00074 23.5 2.9 22 40-61 3-24 (72)
39 PRK07021 fliL flagellar basal 39.5 1.2E+02 0.0026 23.9 6.3 17 109-125 77-93 (162)
40 PF00927 Transglut_C: Transglu 39.5 75 0.0016 22.8 4.8 60 89-149 11-75 (107)
41 COG1580 FliL Flagellar basal b 39.4 1.2E+02 0.0026 24.2 6.1 22 44-65 21-42 (159)
42 PF02009 Rifin_STEVOR: Rifin/s 38.9 20 0.00042 31.6 1.8 20 47-66 261-280 (299)
43 KOG4331 Polytopic membrane pro 36.7 29 0.00063 34.6 2.7 12 51-62 161-172 (865)
44 PHA02844 putative transmembran 35.7 40 0.00086 23.3 2.5 13 51-63 57-69 (75)
45 PF04478 Mid2: Mid2 like cell 35.7 30 0.00064 27.4 2.1 21 51-72 61-81 (154)
46 PHA02650 hypothetical protein; 35.6 30 0.00065 24.2 1.9 13 51-63 58-70 (81)
47 PF12505 DUF3712: Protein of u 35.1 1.9E+02 0.0041 21.5 7.4 62 125-191 2-65 (125)
48 PF09865 DUF2092: Predicted pe 35.0 2.7E+02 0.0058 23.2 8.7 39 88-127 34-74 (214)
49 PTZ00116 signal peptidase; Pro 34.8 1.6E+02 0.0036 24.0 6.4 44 69-112 37-86 (185)
50 PF06092 DUF943: Enterobacteri 34.0 31 0.00066 27.5 2.0 17 51-67 12-28 (157)
51 PF15012 DUF4519: Domain of un 33.8 44 0.00095 21.8 2.3 15 53-67 41-55 (56)
52 PF05545 FixQ: Cbb3-type cytoc 32.9 33 0.00071 21.3 1.7 18 51-69 16-33 (49)
53 PF10907 DUF2749: Protein of u 32.9 47 0.001 22.3 2.4 16 53-69 13-28 (66)
54 COG1589 FtsQ Cell division sep 32.7 61 0.0013 27.8 3.8 34 50-84 38-71 (269)
55 PF04790 Sarcoglycan_1: Sarcog 31.9 3.4E+02 0.0073 23.4 12.7 18 90-107 83-100 (264)
56 PF06837 Fijivirus_P9-2: Fijiv 31.5 38 0.00082 27.7 2.1 21 33-53 106-126 (214)
57 PF14654 Epiglycanin_C: Mucin, 31.3 45 0.00099 24.3 2.3 25 40-64 18-42 (106)
58 PF14927 Neurensin: Neurensin 30.3 1.1E+02 0.0025 23.8 4.6 20 47-67 50-69 (140)
59 COG3008 PqiB Paraquat-inducibl 30.2 1E+02 0.0023 29.4 5.1 31 55-86 32-62 (553)
60 PRK11486 flagellar biosynthesi 30.0 38 0.00083 25.8 1.9 24 43-66 18-41 (124)
61 PF15145 DUF4577: Domain of un 29.9 58 0.0013 24.4 2.7 22 46-67 67-88 (128)
62 PF05399 EVI2A: Ectropic viral 29.7 58 0.0013 27.2 3.0 26 40-65 129-154 (227)
63 PF07172 GRP: Glycine rich pro 29.6 45 0.00098 24.1 2.1 15 48-62 7-21 (95)
64 PRK13150 cytochrome c-type bio 29.3 1.6E+02 0.0036 23.4 5.4 9 116-124 90-98 (159)
65 PF05473 Herpes_UL45: UL45 pro 29.3 1.5E+02 0.0033 24.3 5.5 22 28-49 38-59 (200)
66 PF01102 Glycophorin_A: Glycop 29.0 32 0.00068 26.2 1.3 9 52-60 73-81 (122)
67 COG1463 Ttg2C ABC-type transpo 28.6 1.4E+02 0.0029 26.8 5.5 13 118-130 58-70 (359)
68 PF10669 Phage_Gp23: Protein g 28.3 86 0.0019 22.9 3.3 9 40-48 19-27 (121)
69 PF05170 AsmA: AsmA family; I 27.7 2.6E+02 0.0057 26.6 7.6 93 72-180 441-534 (604)
70 smart00831 Cation_ATPase_N Cat 27.4 83 0.0018 20.2 3.0 8 12-19 22-29 (64)
71 cd07912 Tweety_N N-terminal do 26.7 68 0.0015 29.7 3.2 7 5-11 14-20 (418)
72 PF14283 DUF4366: Domain of un 26.7 49 0.0011 27.8 2.1 9 64-73 182-190 (218)
73 PF11395 DUF2873: Protein of u 26.4 70 0.0015 19.1 2.1 10 56-65 23-32 (43)
74 COG5353 Uncharacterized protei 26.3 42 0.00091 26.5 1.5 23 45-67 11-33 (161)
75 PF01708 Gemini_mov: Geminivir 25.9 19 0.00041 25.8 -0.4 10 11-20 16-25 (91)
76 PF05478 Prominin: Prominin; 25.5 83 0.0018 31.6 3.8 27 29-58 133-159 (806)
77 KOG4298 CAP-binding protein co 25.3 1.2E+02 0.0027 24.9 4.1 32 40-71 148-179 (245)
78 PF06129 Chordopox_G3: Chordop 25.0 1.2E+02 0.0026 22.6 3.7 62 61-123 17-85 (109)
79 COG4736 CcoQ Cbb3-type cytochr 25.0 54 0.0012 21.7 1.7 15 54-69 19-33 (60)
80 COG3190 FliO Flagellar biogene 24.8 43 0.00094 26.0 1.4 24 44-67 25-48 (137)
81 PF14874 PapD-like: Flagellar- 24.7 2.5E+02 0.0054 19.6 8.0 54 92-149 19-72 (102)
82 PHA03097 C-type lectin-like pr 24.5 50 0.0011 26.0 1.7 24 44-67 13-36 (157)
83 PRK01844 hypothetical protein; 23.5 98 0.0021 21.3 2.8 16 46-61 8-23 (72)
84 PF12321 DUF3634: Protein of u 23.4 49 0.0011 24.6 1.4 16 59-75 11-28 (108)
85 PF11770 GAPT: GRB2-binding ad 23.4 89 0.0019 24.7 2.8 18 50-67 19-36 (158)
86 PF07705 CARDB: CARDB; InterP 23.3 2.1E+02 0.0045 19.5 4.7 52 92-148 18-69 (101)
87 PHA02902 putative IMV membrane 23.1 41 0.00089 22.6 0.8 20 48-67 7-26 (70)
88 PRK11627 hypothetical protein; 22.4 2.8E+02 0.0061 22.7 5.8 33 131-174 90-122 (192)
89 KOG4101 Cysteine-rich hydropho 22.3 25 0.00054 27.5 -0.4 7 33-39 100-106 (175)
90 PF04790 Sarcoglycan_1: Sarcog 22.1 84 0.0018 27.1 2.8 12 52-63 24-35 (264)
91 PF01621 Fusion_gly_K: Cell fu 21.4 1.7E+02 0.0036 26.3 4.5 6 31-36 294-299 (337)
92 PF03100 CcmE: CcmE; InterPro 21.3 1.3E+02 0.0028 22.8 3.4 8 116-123 83-90 (131)
93 PF09604 Potass_KdpF: F subuni 21.1 57 0.0012 17.6 1.0 17 51-67 6-22 (25)
94 PRK05886 yajC preprotein trans 20.8 53 0.0012 24.5 1.1 8 60-67 17-24 (109)
95 PTZ00046 rifin; Provisional 20.5 66 0.0014 29.1 1.8 19 49-67 322-340 (358)
96 PF11337 DUF3139: Protein of u 20.3 95 0.0021 21.6 2.3 11 57-67 20-30 (85)
97 PF10296 DUF2404: Putative int 20.3 2.3E+02 0.0051 19.8 4.4 46 69-123 33-79 (91)
No 1
>PLN03160 uncharacterized protein; Provisional
Probab=100.00 E-value=1.9e-36 Score=252.98 Aligned_cols=163 Identities=15% Similarity=0.302 Sum_probs=143.6
Q ss_pred HHHHHHHhheeeeeeCCCccEEEEeeEEEeeEeecC----CCeeeEEEEEEEEEeCCCCeeEEEEceeEEEEEECCEEee
Q 027210 52 LILGLAALIVWLIFRPINKVKFHVTDASLTEFNLTS----NNNLNYKLALNITIRNPNKKIGVHYDRIEARVYYDDKRLT 127 (226)
Q Consensus 52 ~l~gi~~li~~lvlrP~~~P~f~v~s~~v~~~~~~~----~~~l~~~l~~~l~~~NPN~~~~i~Y~~~~v~v~Y~g~~lg 127 (226)
+++++++.++|++||| |+|+|+|+++++++|+++. +..+|++++++++++|||. ++|+|+++++.++|+|+.+|
T Consensus 49 ~l~~v~~~l~~~vfrP-k~P~~~v~~v~l~~~~~~~~~~~~~~~n~tl~~~v~v~NPN~-~~~~Y~~~~~~v~Y~g~~vG 126 (219)
T PLN03160 49 ILATTILVLVFTVFRV-KDPVIKMNGVTVTKLELINNTTLRPGTNITLIADVSVKNPNV-ASFKYSNTTTTIYYGGTVVG 126 (219)
T ss_pred HHHHHHHheeeEEEEc-cCCeEEEEEEEEeeeeeccCCCCceeEEEEEEEEEEEECCCc-eeEEEcCeEEEEEECCEEEE
Confidence 4466677778899999 9999999999999999864 3467888999999999998 99999999999999999999
Q ss_pred cccCCCeeecCCCeEEEEEEEEeceecc-hhHHHHHHhhhcCCeEEEEEEEEEEEEEEEeeEecCceeeEEEeEEEEeCC
Q 027210 128 SVPLTPFYQGHKNTSYLNPVFEGQQILL-GGALRDYNKENNAGVFSIDVKLKLKVRFKLGKIKTPKFKPTIECDLKVPLN 206 (226)
Q Consensus 128 ~~~vp~f~q~~~~~~~v~~~l~~~~v~l-~~~~~~l~~d~~~G~v~~~v~v~~~vr~~vg~~~~~~~~~~v~C~l~v~~~ 206 (226)
++.+|+|+|++++++.+++++......+ ++ .+|.+|.++|.++|++++++++++++|++.++++.++++|++.+++.
T Consensus 127 ~a~~p~g~~~ar~T~~l~~tv~~~~~~~~~~--~~L~~D~~~G~v~l~~~~~v~gkVkv~~i~k~~v~~~v~C~v~V~~~ 204 (219)
T PLN03160 127 EARTPPGKAKARRTMRMNVTVDIIPDKILSV--PGLLTDISSGLLNMNSYTRIGGKVKILKIIKKHVVVKMNCTMTVNIT 204 (219)
T ss_pred EEEcCCcccCCCCeEEEEEEEEEEeceeccc--hhHHHHhhCCeEEEEEEEEEEEEEEEEEEEEEEEEEEEEeEEEEECC
Confidence 9999999999999999998876544433 32 46889999999999999999999999999999999999999999886
Q ss_pred CCCCCccccceecCceeec
Q 027210 207 SSNGRFAGRRFETTKCDVD 225 (226)
Q Consensus 207 ~~~~~~~~~~~~~~~C~~~ 225 (226)
+. .+++++|+.+
T Consensus 205 ~~-------~i~~~~C~~~ 216 (219)
T PLN03160 205 SQ-------AIQGQKCKRH 216 (219)
T ss_pred CC-------EEeccEeccc
Confidence 53 6888999876
No 2
>PF03168 LEA_2: Late embryogenesis abundant protein; InterPro: IPR004864 Different types of LEA proteins are expressed at different stages of late embryogenesis in higher plant seed embryos and under conditions of dehydration stress [, ]. The function of these proteins is unknown. ; PDB: 3BUT_A 1XO8_A 1YYC_A.
Probab=99.45 E-value=8.6e-13 Score=96.44 Aligned_cols=98 Identities=27% Similarity=0.461 Sum_probs=73.3
Q ss_pred EEEEeCCCCeeEEEEceeEEEEEECCEEee-cccCCCeeecCCCeEEEEEEEEeceecchhHHHHHHhhhcCCeEEEEEE
Q 027210 98 NITIRNPNKKIGVHYDRIEARVYYDDKRLT-SVPLTPFYQGHKNTSYLNPVFEGQQILLGGALRDYNKENNAGVFSIDVK 176 (226)
Q Consensus 98 ~l~~~NPN~~~~i~Y~~~~v~v~Y~g~~lg-~~~vp~f~q~~~~~~~v~~~l~~~~v~l~~~~~~l~~d~~~G~v~~~v~ 176 (226)
+|+++|||. ++++|+++++.++|+|..+| ....++|.|++++++.+.+.+..+...+ ...+.++. +|..++++.
T Consensus 1 ~l~v~NPN~-~~i~~~~~~~~v~~~g~~v~~~~~~~~~~i~~~~~~~v~~~v~~~~~~l---~~~l~~~~-~~~~~~~v~ 75 (101)
T PF03168_consen 1 TLSVRNPNS-FGIRYDSIEYDVYYNGQRVGTGGSLPPFTIPARSSTTVPVPVSVDYSDL---PRLLKDLL-AGRVPFDVT 75 (101)
T ss_dssp EEEEEESSS-S-EEEEEEEEEEEESSSEEEEEEECE-EEESSSCEEEEEEEEEEEHHHH---HHHHHHHH-HTTSCEEEE
T ss_pred CEEEECCCc-eeEEEeCEEEEEEECCEEEECccccCCeEECCCCcEEEEEEEEEcHHHH---HHHHHhhh-ccccceEEE
Confidence 589999999 99999999999999999999 7789999999999999888776654433 34455556 566777788
Q ss_pred EEEEEEEEE-eeEecCceeeEEEeE
Q 027210 177 LKLKVRFKL-GKIKTPKFKPTIECD 200 (226)
Q Consensus 177 v~~~vr~~v-g~~~~~~~~~~v~C~ 200 (226)
+++++++++ +.....++.+.++|+
T Consensus 76 ~~~~g~~~v~~~~~~~~~~v~~~~~ 100 (101)
T PF03168_consen 76 YRIRGTFKVLGTPIFGSVRVPVSCE 100 (101)
T ss_dssp EEEEEEEE-EE-TTTSCEEEEEEEE
T ss_pred EEEEEEEEEcccceeeeEEEeEEeE
Confidence 888888884 443334556666664
No 3
>smart00769 WHy Water Stress and Hypersensitive response.
Probab=98.59 E-value=1.4e-06 Score=64.00 Aligned_cols=61 Identities=15% Similarity=0.237 Sum_probs=56.2
Q ss_pred CeeeEEEEEEEEEeCCCCeeEEEEceeEEEEEECCEEeecccCC-CeeecCCCeEEEEEEEEe
Q 027210 89 NNLNYKLALNITIRNPNKKIGVHYDRIEARVYYDDKRLTSVPLT-PFYQGHKNTSYLNPVFEG 150 (226)
Q Consensus 89 ~~l~~~l~~~l~~~NPN~~~~i~Y~~~~v~v~Y~g~~lg~~~vp-~f~q~~~~~~~v~~~l~~ 150 (226)
..++.++.++++++|||. +.+.|++++..++|+|..+|++..+ ++..++++++.+++.+..
T Consensus 11 ~~~~~~~~l~l~v~NPN~-~~l~~~~~~y~l~~~g~~v~~g~~~~~~~ipa~~~~~v~v~~~~ 72 (100)
T smart00769 11 SGLEIEIVLKVKVQNPNP-FPIPVNGLSYDLYLNGVELGSGEIPDSGTLPGNGRTVLDVPVTV 72 (100)
T ss_pred cceEEEEEEEEEEECCCC-CccccccEEEEEEECCEEEEEEEcCCCcEECCCCcEEEEEEEEe
Confidence 456889999999999998 9999999999999999999999986 799999999999888876
No 4
>PF07092 DUF1356: Protein of unknown function (DUF1356); InterPro: IPR009790 This family consists of several hypothetical mammalian proteins of around 250 residues in length. The function of this family is unknown.
Probab=97.79 E-value=0.0012 Score=55.62 Aligned_cols=81 Identities=14% Similarity=0.206 Sum_probs=59.8
Q ss_pred CCCccEEEEeeEEEeeEeecC-CCeeeEEEEEEEEEeCCCCeeEEEEceeEEEEEECCEEeecccCCC-eeecCCCeEEE
Q 027210 67 PINKVKFHVTDASLTEFNLTS-NNNLNYKLALNITIRNPNKKIGVHYDRIEARVYYDDKRLTSVPLTP-FYQGHKNTSYL 144 (226)
Q Consensus 67 P~~~P~f~v~s~~v~~~~~~~-~~~l~~~l~~~l~~~NPN~~~~i~Y~~~~v~v~Y~g~~lg~~~vp~-f~q~~~~~~~v 144 (226)
| |.-.++-.++......++. +..+..++.-++.++|||- ..+.-.++.+++.|....+|.+.... ...+|++.+.+
T Consensus 98 P-RsV~v~~~gv~s~~V~f~~~~~~v~l~itn~lNIsN~NF-y~V~Vt~~s~qv~~~~~VVG~~~~~~~~~I~Prs~~q~ 175 (238)
T PF07092_consen 98 P-RSVTVSPVGVKSVTVSFNPDKSTVQLNITNTLNISNPNF-YPVTVTNLSIQVLYMKTVVGKGKNSNITVIGPRSSKQV 175 (238)
T ss_pred C-cEEEEecCcEEEEEEEEeCCCCEEEEEEEEEEEccCCCE-EEEEEEeEEEEEEEEEeEEeeeEecceEEecccCCceE
Confidence 8 7555554444444443443 4568888999999999996 99999999999999999999987654 46777777666
Q ss_pred EEEEE
Q 027210 145 NPVFE 149 (226)
Q Consensus 145 ~~~l~ 149 (226)
...+.
T Consensus 176 ~~tV~ 180 (238)
T PF07092_consen 176 NYTVK 180 (238)
T ss_pred EEEee
Confidence 65543
No 5
>COG5608 LEA14-like dessication related protein [Defense mechanisms]
Probab=97.72 E-value=0.0024 Score=50.06 Aligned_cols=111 Identities=14% Similarity=0.191 Sum_probs=76.7
Q ss_pred CCCccEEEEeeEEEeeEeecCCCeeeEEEEEEEEEeCCCCeeEEEEceeEEEEEECCEEeeccc-CCCeeecCCCeEEEE
Q 027210 67 PINKVKFHVTDASLTEFNLTSNNNLNYKLALNITIRNPNKKIGVHYDRIEARVYYDDKRLTSVP-LTPFYQGHKNTSYLN 145 (226)
Q Consensus 67 P~~~P~f~v~s~~v~~~~~~~~~~l~~~l~~~l~~~NPN~~~~i~Y~~~~v~v~Y~g~~lg~~~-vp~f~q~~~~~~~v~ 145 (226)
|.+.|...--.+..-....+ ...+-.++.++|||. +.+-...++..++-+|..+|.+. ..++..+|++...+.
T Consensus 29 ~~~~p~ve~~ka~wGkvt~s-----~~EiV~t~KiyNPN~-fPipVtgl~y~vymN~Iki~eG~~~k~~~v~p~S~~tvd 102 (161)
T COG5608 29 PVKKPGVESMKAKWGKVTNS-----ETEIVGTLKIYNPNP-FPIPVTGLQYAVYMNDIKIGEGEILKGTTVPPNSRETVD 102 (161)
T ss_pred EcCCCCceEEEEEEEEEecc-----ceEEEEEEEecCCCC-cceeeeceEEEEEEcceEeeccccccceEECCCCeEEEE
Confidence 33667777666666654332 457788999999998 99999999999999999999987 467999999999988
Q ss_pred EEEEeceecchhHHHHHHhhhcCCeE-EEEEEEEEEEEEEEeeE
Q 027210 146 PVFEGQQILLGGALRDYNKENNAGVF-SIDVKLKLKVRFKLGKI 188 (226)
Q Consensus 146 ~~l~~~~v~l~~~~~~l~~d~~~G~v-~~~v~v~~~vr~~vg~~ 188 (226)
+.+..+.-.+. +-+....++|.- . ++++.+..+++|..
T Consensus 103 v~l~~d~~~~k---e~w~~hi~ngErs~--Ir~~i~~~v~vg~~ 141 (161)
T COG5608 103 VPLRLDNSKIK---EWWVTHIENGERST--IRVRIKGVVKVGGM 141 (161)
T ss_pred EEEEEehHHHH---HHHHHHhhccCccc--EEEEEEEEEEEccE
Confidence 87765543331 224444555532 2 33333444555544
No 6
>PF12751 Vac7: Vacuolar segregation subunit 7; InterPro: IPR024260 Vac7 is localised at the vacuole membrane, a location which is consistent with its involvement in vacuole morphology and inheritance []. Vac7 has been shown to function as an upstream regulator of the Fab1 lipid kinase pathway []. The Fab1 lipid pathway is important for correct regulation of membrane trafficking events.
Probab=97.40 E-value=0.0027 Score=56.89 Aligned_cols=35 Identities=17% Similarity=0.339 Sum_probs=29.1
Q ss_pred eEEEEEEEEEeCCCCeeEEEEceeEEEEEECCEEee
Q 027210 92 NYKLALNITIRNPNKKIGVHYDRIEARVYYDDKRLT 127 (226)
Q Consensus 92 ~~~l~~~l~~~NPN~~~~i~Y~~~~v~v~Y~g~~lg 127 (226)
-.-|++++.+.|||- +.|..++.++.|+-+-.-+|
T Consensus 347 ELmfdl~V~A~NPn~-~~V~I~d~dldIFAKS~yvg 381 (387)
T PF12751_consen 347 ELMFDLTVEAFNPNW-FTVTIDDMDLDIFAKSRYVG 381 (387)
T ss_pred eEEEeeEEEEECCCe-EEEEeccceeeeEecCCccC
Confidence 455788999999997 99999999999997655444
No 7
>PLN03160 uncharacterized protein; Provisional
Probab=96.49 E-value=0.059 Score=45.19 Aligned_cols=90 Identities=13% Similarity=0.086 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHhheeeeeeCCC--ccEEEEeeEEEee-------Eeec--CC-CeeeEEEEEEEEEeCCCCeeEEEEc
Q 027210 46 IIVSAVLILGLAALIVWLIFRPIN--KVKFHVTDASLTE-------FNLT--SN-NNLNYKLALNITIRNPNKKIGVHYD 113 (226)
Q Consensus 46 ~~l~l~~l~gi~~li~~lvlrP~~--~P~f~v~s~~v~~-------~~~~--~~-~~l~~~l~~~l~~~NPN~~~~i~Y~ 113 (226)
+++++++++++++++++=--.| + .-.++++++.+.. +|++ .+ ..-|.|. +.+.-+ |..+.++|+
T Consensus 46 ~~l~l~~v~~~l~~~vfrPk~P-~~~v~~v~l~~~~~~~~~~~~~~~n~tl~~~v~v~NPN~-~~~~Y~--~~~~~v~Y~ 121 (219)
T PLN03160 46 TLLILATTILVLVFTVFRVKDP-VIKMNGVTVTKLELINNTTLRPGTNITLIADVSVKNPNV-ASFKYS--NTTTTIYYG 121 (219)
T ss_pred HHHHHHHHHHheeeEEEEccCC-eEEEEEEEEeeeeeccCCCCceeEEEEEEEEEEEECCCc-eeEEEc--CeEEEEEEC
Confidence 3444556666666666666666 4 3566666666532 2221 00 0113333 334443 344899998
Q ss_pred eeEEEEEECCEEeecccCCCeeecCCCeEE
Q 027210 114 RIEARVYYDDKRLTSVPLTPFYQGHKNTSY 143 (226)
Q Consensus 114 ~~~v~v~Y~g~~lg~~~vp~f~q~~~~~~~ 143 (226)
...+.- ..+..+..++..+..-+.+.
T Consensus 122 g~~vG~----a~~p~g~~~ar~T~~l~~tv 147 (219)
T PLN03160 122 GTVVGE----ARTPPGKAKARRTMRMNVTV 147 (219)
T ss_pred CEEEEE----EEcCCcccCCCCeEEEEEEE
Confidence 765543 23555666666666665553
No 8
>COG4698 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.13 E-value=0.79 Score=37.06 Aligned_cols=39 Identities=26% Similarity=0.428 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhheeeeeeCCCccEEEEeeEEE
Q 027210 39 LFTLLIKIIVSAVLILGLAALIVWLIFRPINKVKFHVTDASL 80 (226)
Q Consensus 39 ~~~~l~~~~l~l~~l~gi~~li~~lvlrP~~~P~f~v~s~~v 80 (226)
+|.++|+++|++.++++ ++++.+++.| +.|...+.+.+=
T Consensus 10 ~WKw~f~iLLAln~l~~--~~i~~~vlsp-~ee~t~~~~a~~ 48 (197)
T COG4698 10 YWKWLFFILLALNTLLA--VLIALFVLSP-REEPTHLEDASE 48 (197)
T ss_pred HHHHHHHHHHHHHHHHH--HHhheeeccC-CCCCchhhccCc
Confidence 58999988887766655 6667778999 997666665543
No 9
>TIGR03602 streptolysinS bacteriocin protoxin, streptolysin S family. Members of this family are bacteriocin precursors. These small, ribosomally produced polypeptide precursors are extensively processed post-translationally. This family belongs to a class of heterocycle-containing bacteriocins, including streptolysin S from Streptococcus pyogenes, and related bacteriocins from Streptococcus iniae and Clostridium botulinum. Streptolysin S is hemolytic. Bacteriocin genes in general are small and highly diverse, with odd sequence composition, and are easily missed by many gene-finding programs.
Probab=88.49 E-value=0.14 Score=32.23 Aligned_cols=8 Identities=75% Similarity=2.295 Sum_probs=4.1
Q ss_pred CCcccchh
Q 027210 31 GGCGGCCC 38 (226)
Q Consensus 31 ~~c~~ccc 38 (226)
++||||||
T Consensus 24 ggcccccc 31 (56)
T TIGR03602 24 GGCCCCCC 31 (56)
T ss_pred CCeEEEec
Confidence 55555544
No 10
>PF10177 DUF2371: Uncharacterised conserved protein (DUF2371); InterPro: IPR018787 This family of proteins with no known function is conserved from nematodes to humans. It includes members of the TMEM200 family of transmembrane proteins.
Probab=80.67 E-value=3.1 Score=32.50 Aligned_cols=30 Identities=23% Similarity=0.419 Sum_probs=18.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhheeeeeeCCC
Q 027210 37 CCLFTLLIKIIVSAVLILGLAALIVWLIFRPIN 69 (226)
Q Consensus 37 cc~~~~l~~~~l~l~~l~gi~~li~~lvlrP~~ 69 (226)
||+.+.+++++=++++++|+++.++ =|.| +
T Consensus 35 l~s~Sg~~l~lG~lvllvGiaMAv~--GYwp-~ 64 (141)
T PF10177_consen 35 LCSPSGLFLLLGILVLLVGIAMAVL--GYWP-K 64 (141)
T ss_pred EecHHHHHHHHHHHHHHHhhHhhee--eccc-c
Confidence 4566776666666677777765443 3567 5
No 11
>PF06072 Herpes_US9: Alphaherpesvirus tegument protein US9; InterPro: IPR009278 This family consists of several US9 and related proteins from the Alphaherpesviruses. The function of the US9 protein is unknown although in Bovine herpesvirus 5 Us9 is essential for the anterograde spread of the virus from the olfactory mucosa to the bulb [].; GO: 0019033 viral tegument
Probab=79.73 E-value=0.54 Score=30.96 Aligned_cols=6 Identities=33% Similarity=0.678 Sum_probs=2.8
Q ss_pred CCCCcc
Q 027210 29 RGGGCG 34 (226)
Q Consensus 29 ~~~~c~ 34 (226)
|+|+|.
T Consensus 28 RrRrc~ 33 (60)
T PF06072_consen 28 RRRRCR 33 (60)
T ss_pred HHHHHH
Confidence 445553
No 12
>PF11906 DUF3426: Protein of unknown function (DUF3426); InterPro: IPR021834 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 262 to 463 amino acids in length.
Probab=76.87 E-value=16 Score=28.08 Aligned_cols=58 Identities=14% Similarity=0.087 Sum_probs=39.8
Q ss_pred EEEeeEEEeeEeecCCCeeeEEEEEEEEEeCCCCeeEEEEceeEEEEE-ECCEEeecccC
Q 027210 73 FHVTDASLTEFNLTSNNNLNYKLALNITIRNPNKKIGVHYDRIEARVY-YDDKRLTSVPL 131 (226)
Q Consensus 73 f~v~s~~v~~~~~~~~~~l~~~l~~~l~~~NPN~~~~i~Y~~~~v~v~-Y~g~~lg~~~v 131 (226)
-.++.+++.+..+.....-.-.+.++.++.|... ....|-.+++.++ -+|+.+++-.+
T Consensus 48 ~~~~~l~i~~~~~~~~~~~~~~l~v~g~i~N~~~-~~~~~P~l~l~L~D~~g~~l~~r~~ 106 (149)
T PF11906_consen 48 RDIDALKIESSDLRPVPDGPGVLVVSGTIRNRAD-FPQALPALELSLLDAQGQPLARRVF 106 (149)
T ss_pred cCcceEEEeeeeEEeecCCCCEEEEEEEEEeCCC-CcccCceEEEEEECCCCCEEEEEEE
Confidence 3455555555444332223556777889999997 8899999999998 77877776544
No 13
>PF14155 DUF4307: Domain of unknown function (DUF4307)
Probab=70.98 E-value=40 Score=25.04 Aligned_cols=29 Identities=14% Similarity=0.181 Sum_probs=16.0
Q ss_pred EECCEEeecc--cCCCeeecCCCeEEEEEEEEec
Q 027210 120 YYDDKRLTSV--PLTPFYQGHKNTSYLNPVFEGQ 151 (226)
Q Consensus 120 ~Y~g~~lg~~--~vp~f~q~~~~~~~v~~~l~~~ 151 (226)
.|++..+|.. .+|+ +...+..+++.+...
T Consensus 71 ~~d~aeVGrreV~vp~---~~~~~~~~~v~v~Tt 101 (112)
T PF14155_consen 71 DYDGAEVGRREVLVPP---SGERTVRVTVTVRTT 101 (112)
T ss_pred eCCCCEEEEEEEEECC---CCCcEEEEEEEEEec
Confidence 3677778864 3565 334444455555443
No 14
>KOG3950 consensus Gamma/delta sarcoglycan [Cytoskeleton]
Probab=69.07 E-value=71 Score=27.38 Aligned_cols=23 Identities=26% Similarity=0.371 Sum_probs=17.2
Q ss_pred eeeEEEEEEEEEeCCCCeeEEEE
Q 027210 90 NLNYKLALNITIRNPNKKIGVHY 112 (226)
Q Consensus 90 ~l~~~l~~~l~~~NPN~~~~i~Y 112 (226)
.+...=++++.++|||.++.=+.
T Consensus 105 ~~~S~rnvtvnarn~~g~v~~~l 127 (292)
T KOG3950|consen 105 YLQSARNVTVNARNPNGKVTGQL 127 (292)
T ss_pred EEEeccCeeEEccCCCCceeeeE
Confidence 45556689999999999775444
No 15
>PRK13183 psbN photosystem II reaction center protein N; Provisional
Probab=60.17 E-value=12 Score=23.39 Aligned_cols=22 Identities=23% Similarity=0.481 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHhheeeeeeC
Q 027210 46 IIVSAVLILGLAALIVWLIFRP 67 (226)
Q Consensus 46 ~~l~l~~l~gi~~li~~lvlrP 67 (226)
++.+..+++++....+|..+-|
T Consensus 11 ~i~i~~lL~~~TgyaiYtaFGp 32 (46)
T PRK13183 11 AITILAILLALTGFGIYTAFGP 32 (46)
T ss_pred HHHHHHHHHHHhhheeeeccCC
Confidence 3455678889999999999988
No 16
>PF09624 DUF2393: Protein of unknown function (DUF2393); InterPro: IPR013417 The function of this protein is unknown. It is always found as part of a two-gene operon with IPR013416 from INTERPRO, a protein that appears to span the membrane seven times. It has so far been found in the bacteria Anabaena sp. (strain PCC 7120), Agrobacterium tumefaciens, Rhizobium meliloti, and Gloeobacter violaceus.
Probab=58.74 E-value=82 Score=24.24 Aligned_cols=51 Identities=16% Similarity=0.273 Sum_probs=34.0
Q ss_pred ccEEEEeeEEEeeEeecCCCeeeEEEEEEEEEeCCCCeeEEEEceeEEEEEECCEEeecc
Q 027210 70 KVKFHVTDASLTEFNLTSNNNLNYKLALNITIRNPNKKIGVHYDRIEARVYYDDKRLTSV 129 (226)
Q Consensus 70 ~P~f~v~s~~v~~~~~~~~~~l~~~l~~~l~~~NPN~~~~i~Y~~~~v~v~Y~g~~lg~~ 129 (226)
++..++.+.+- +.. +-.+.+..+++|-.+ ..+..=.+++.+..++...++.
T Consensus 47 ~~~~~~~~~~~--l~~------~~~~~v~g~V~N~g~-~~i~~c~i~~~l~~~~~~~~n~ 97 (149)
T PF09624_consen 47 KIELTLTSQKR--LQY------SESFYVDGTVTNTGK-FTIKKCKITVKLYNDKQVSGNK 97 (149)
T ss_pred CceEEEeeeee--eee------ccEEEEEEEEEECCC-CEeeEEEEEEEEEeCCCccCch
Confidence 36777666543 222 334566788999997 8888878888888866544443
No 17
>CHL00020 psbN photosystem II protein N
Probab=58.47 E-value=10 Score=23.38 Aligned_cols=28 Identities=11% Similarity=0.216 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHhheeeeeeCCCccEEEEe
Q 027210 46 IIVSAVLILGLAALIVWLIFRPINKVKFHVT 76 (226)
Q Consensus 46 ~~l~l~~l~gi~~li~~lvlrP~~~P~f~v~ 76 (226)
++.+..+++++....+|..+-| |+-.++
T Consensus 8 ~i~i~~ll~~~Tgy~iYtaFGp---pSk~Lr 35 (43)
T CHL00020 8 AIFISGLLVSFTGYALYTAFGQ---PSKQLR 35 (43)
T ss_pred HHHHHHHHHHhhheeeeeccCC---chhccC
Confidence 3445678889999999999988 554443
No 18
>TIGR02745 ccoG_rdxA_fixG cytochrome c oxidase accessory protein FixG. Member of this ferredoxin-like protein family are found exclusively in species with an operon encoding the cbb3 type of cytochrome c oxidase (cco-cbb3), and near the cco-cbb3 operon in about half the cases. The cco-cbb3 is found in a variety of proteobacteria and almost nowhere else, and is associated with oxygen use under microaerobic conditions. Some (but not all) of these proteobacteria are also nitrogen-fixing, hence the gene symbol fixG. FixG was shown essential for functional cco-cbb3 expression in Bradyrhizobium japonicum.
Probab=56.24 E-value=1.7e+02 Score=27.17 Aligned_cols=19 Identities=11% Similarity=0.043 Sum_probs=13.2
Q ss_pred CeeecCCCeEEEEEEEEec
Q 027210 133 PFYQGHKNTSYLNPVFEGQ 151 (226)
Q Consensus 133 ~f~q~~~~~~~v~~~l~~~ 151 (226)
++..+++++..+.+.+...
T Consensus 382 ~i~v~~g~~~~~~v~v~~~ 400 (434)
T TIGR02745 382 PIHVKAGEKVKLPVFLRTP 400 (434)
T ss_pred eEEECCCCEEEEEEEEEec
Confidence 6788888887776665443
No 19
>PF09911 DUF2140: Uncharacterized protein conserved in bacteria (DUF2140); InterPro: IPR018672 This family of conserved hypothetical proteins has no known function.
Probab=56.00 E-value=17 Score=29.70 Aligned_cols=30 Identities=13% Similarity=0.413 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhheeeeeeCCCcc
Q 027210 39 LFTLLIKIIVSAVLILGLAALIVWLIFRPINKV 71 (226)
Q Consensus 39 ~~~~l~~~~l~l~~l~gi~~li~~lvlrP~~~P 71 (226)
.|.++|++++++ ++++++++++.+++| +.|
T Consensus 2 ~WK~aF~~Lla~--~l~~~~~~~~~~~~~-~~~ 31 (187)
T PF09911_consen 2 WWKWAFLILLAL--NLAFVIVVFFRLFQP-SEP 31 (187)
T ss_pred hHHHHHHHHHHH--HHHHHhheeeEEEcc-CCC
Confidence 377777776543 555556677788999 865
No 20
>PRK05529 cell division protein FtsQ; Provisional
Probab=55.74 E-value=24 Score=30.12 Aligned_cols=43 Identities=7% Similarity=0.009 Sum_probs=28.1
Q ss_pred cEEEEeeEEEeeEeecC-------------CCe--------------eeEEEEEEEEEeCCCCeeEEEEce
Q 027210 71 VKFHVTDASLTEFNLTS-------------NNN--------------LNYKLALNITIRNPNKKIGVHYDR 114 (226)
Q Consensus 71 P~f~v~s~~v~~~~~~~-------------~~~--------------l~~~l~~~l~~~NPN~~~~i~Y~~ 114 (226)
|-|.++++.+++-..-+ .+. +-.-=+++++-+.||. +.|+-.+
T Consensus 59 p~~~v~~I~V~Gn~~vs~~eI~~~~~~~~g~~l~~vd~~~~~~~l~~~P~V~sa~V~r~~P~t-l~I~V~E 128 (255)
T PRK05529 59 PLLALRSIEVAGNMRVKPQDIVAALRDQFGKPLPLVDPETVRKKLAAFPLIRSYSVESKPPGT-IVVRVVE 128 (255)
T ss_pred CceEEEEEEEECCccCCHHHHHHHhcccCCCcceeECHHHHHHHHhcCCCEeEEEEEEeCCCE-EEEEEEE
Confidence 69999999998754321 011 1112267788889997 8888755
No 21
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=54.27 E-value=21 Score=32.43 Aligned_cols=39 Identities=31% Similarity=0.654 Sum_probs=21.0
Q ss_pred CCCCCC-CCCCcccchhHHHHHHHHHHHHHHHHHHHHhhee
Q 027210 23 HYHRPG-RGGGCGGCCCLFTLLIKIIVSAVLILGLAALIVW 62 (226)
Q Consensus 23 ~~~r~~-~~~~c~~ccc~~~~l~~~~l~l~~l~gi~~li~~ 62 (226)
+|.|.. ..++|+=--. +-+||..++-+++++|++.|.+|
T Consensus 10 ~y~R~G~~~kgC~YYlr-yfFlF~SLIQ~LIIlgLVLFmVY 49 (442)
T PF06637_consen 10 PYSRAGGKGKGCWYYLR-YFFLFVSLIQFLIILGLVLFMVY 49 (442)
T ss_pred cccccCCCCCChhHHHH-HHHHHHHHHHHHHHHHHHHHHhh
Confidence 466653 3444431111 23455666667777777766665
No 22
>TIGR02588 conserved hypothetical protein TIGR02588. The function of this protein is unknown. It is always found as part of a two-gene operon with TIGR02587, a protein that appears to span the membrane seven times. It is found in Nostoc sp. PCC 7120, Agrobacterium tumefaciens, Sinorhizobium meliloti, and Gloeobacter violaceus, so far, all of which are bacterial.
Probab=54.23 E-value=95 Score=23.62 Aligned_cols=49 Identities=12% Similarity=0.261 Sum_probs=30.4
Q ss_pred HHHHHHHHHhhee--eeeeCCCccEEEEeeEEEeeEeecCCCeeeEEEEEEEEEeCCCC
Q 027210 50 AVLILGLAALIVW--LIFRPINKVKFHVTDASLTEFNLTSNNNLNYKLALNITIRNPNK 106 (226)
Q Consensus 50 l~~l~gi~~li~~--lvlrP~~~P~f~v~s~~v~~~~~~~~~~l~~~l~~~l~~~NPN~ 106 (226)
++++++++.+++| +.-++ +.|.+++......+- ....+-+-++++|-..
T Consensus 12 ~~ill~viglv~y~~l~~~~-~pp~l~v~~~~~~r~-------~~gqyyVpF~V~N~gg 62 (122)
T TIGR02588 12 TLILAAMFGLVAYDWLRYSN-KAAVLEVAPAEVERM-------QTGQYYVPFAIHNLGG 62 (122)
T ss_pred HHHHHHHHHHHHHHhhccCC-CCCeEEEeehheeEE-------eCCEEEEEEEEEeCCC
Confidence 3445555556655 45667 889998887666542 1223445567788776
No 23
>PF02468 PsbN: Photosystem II reaction centre N protein (psbN); InterPro: IPR003398 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbN found in PSII. PsbN may have a role in PSII stability, however its actual function unknown. PsbN does not appear to be essential for photoautotrophic growth or normal PSII function.; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane
Probab=52.09 E-value=12 Score=23.10 Aligned_cols=22 Identities=18% Similarity=0.507 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHhheeeeeeC
Q 027210 46 IIVSAVLILGLAALIVWLIFRP 67 (226)
Q Consensus 46 ~~l~l~~l~gi~~li~~lvlrP 67 (226)
++.+..++++++...+|..+-|
T Consensus 8 ~i~i~~~lv~~Tgy~iYtaFGp 29 (43)
T PF02468_consen 8 AIFISCLLVSITGYAIYTAFGP 29 (43)
T ss_pred HHHHHHHHHHHHhhhhhheeCC
Confidence 3445677888899999999988
No 24
>PF08113 CoxIIa: Cytochrome c oxidase subunit IIa family; InterPro: IPR012538 This family consists of the cytochrome c oxidase subunit IIa family. The bax-type cytochrome c oxidase from Thermus thermophilus is known as a two subunit enzyme. From its crystal structure, it was discovered that an additional transmembrane helix, subunit IIa, spans the membrane. This subunit consists of 34 residues forming one helix across the membrane. The presence of this subunit seems to be important for the function of cytochrome c oxidases [].; PDB: 2QPD_C 3QJR_C 3EH5_C 3BVD_C 3S39_C 3QJU_C 3QJS_C 4EV3_C 3QJT_C 4FA7_C ....
Probab=49.81 E-value=11 Score=21.82 Aligned_cols=15 Identities=33% Similarity=0.727 Sum_probs=10.2
Q ss_pred HHHHHHHHHHhheee
Q 027210 49 SAVLILGLAALIVWL 63 (226)
Q Consensus 49 ~l~~l~gi~~li~~l 63 (226)
+.+.+++++++++|+
T Consensus 10 ~vv~iLt~~ILvFWf 24 (34)
T PF08113_consen 10 GVVMILTAFILVFWF 24 (34)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred eeHHHHHHHHHHHHH
Confidence 345666777777775
No 25
>PRK10893 lipopolysaccharide exporter periplasmic protein; Provisional
Probab=48.84 E-value=1.5e+02 Score=24.23 Aligned_cols=20 Identities=10% Similarity=0.204 Sum_probs=16.7
Q ss_pred eCCCccEEEEeeEEEeeEeec
Q 027210 66 RPINKVKFHVTDASLTEFNLT 86 (226)
Q Consensus 66 rP~~~P~f~v~s~~v~~~~~~ 86 (226)
.+ +.|.|.+++++...++.+
T Consensus 37 ~~-~~Pdy~~~~~~~~~yd~~ 56 (192)
T PRK10893 37 NN-NDPTYQSQHTDTVVYNPE 56 (192)
T ss_pred CC-CCCCEEEeccEEEEECCC
Confidence 46 779999999999888764
No 26
>PRK07718 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=48.31 E-value=40 Score=26.12 Aligned_cols=14 Identities=29% Similarity=0.482 Sum_probs=8.0
Q ss_pred EEceeEEEEEECCE
Q 027210 111 HYDRIEARVYYDDK 124 (226)
Q Consensus 111 ~Y~~~~v~v~Y~g~ 124 (226)
+|=..++.+.+++.
T Consensus 63 ~ylk~~i~l~~~~~ 76 (142)
T PRK07718 63 NFIRIQFKIETDSK 76 (142)
T ss_pred CEEEEEEEEEECCH
Confidence 35456666666654
No 27
>PF05473 Herpes_UL45: UL45 protein; InterPro: IPR008646 This family consists several UL45 proteins and homologues found in the herpes simplex virus family. The herpes simplex virus UL45 gene encodes an 18 kDa virion envelope protein whose function remains unknown. It has been suggested that the 18 kDa UL45 gene product is required for efficient growth in the central nervous system at low doses and may play an important role under the conditions of a naturally acquired infection []. The Equine herpesvirus 1 UL45 protein represents a type II membrane glycoprotein which has found to be non-essential for EHV-1 growth in vitro but deletion reduces the viruses' replication efficiency [].
Probab=47.91 E-value=54 Score=27.03 Aligned_cols=7 Identities=29% Similarity=0.591 Sum_probs=3.0
Q ss_pred CCCCccc
Q 027210 29 RGGGCGG 35 (226)
Q Consensus 29 ~~~~c~~ 35 (226)
+.+.|.|
T Consensus 42 ~~s~~~~ 48 (200)
T PF05473_consen 42 RKSPCAC 48 (200)
T ss_pred cCCCccc
Confidence 3344443
No 28
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=47.30 E-value=10 Score=28.84 Aligned_cols=27 Identities=26% Similarity=0.283 Sum_probs=10.6
Q ss_pred HHHHHHHHhheeeeeeCCCccEEEEee
Q 027210 51 VLILGLAALIVWLIFRPINKVKFHVTD 77 (226)
Q Consensus 51 ~~l~gi~~li~~lvlrP~~~P~f~v~s 77 (226)
+-++|++++|+|++.|=+|++...++.
T Consensus 75 aGvIg~Illi~y~irR~~Kk~~~~~~p 101 (122)
T PF01102_consen 75 AGVIGIILLISYCIRRLRKKSSSDVQP 101 (122)
T ss_dssp HHHHHHHHHHHHHHHHHS---------
T ss_pred HHHHHHHHHHHHHHHHHhccCCCCCCC
Confidence 344556667777765543555555554
No 29
>PF11322 DUF3124: Protein of unknown function (DUF3124); InterPro: IPR021471 This bacterial family of proteins has no known function.
Probab=46.97 E-value=1.3e+02 Score=23.02 Aligned_cols=55 Identities=24% Similarity=0.369 Sum_probs=36.8
Q ss_pred CCeeeEEEEEEEEEeCCCCeeEEEEceeEEEEEE--CCEEeecccCCCeeecCCCeEEEE
Q 027210 88 NNNLNYKLALNITIRNPNKKIGVHYDRIEARVYY--DDKRLTSVPLTPFYQGHKNTSYLN 145 (226)
Q Consensus 88 ~~~l~~~l~~~l~~~NPN~~~~i~Y~~~~v~v~Y--~g~~lg~~~vp~f~q~~~~~~~v~ 145 (226)
+.....+|+++|+++|.+.+-.+.-.+.+ +| +|+.+-+---.|...+|-.+..+-
T Consensus 18 ~~~~~~~Lt~tLSiRNtd~~~~i~i~~v~---Yydt~G~lvr~yl~~Pi~L~Pl~t~~~v 74 (125)
T PF11322_consen 18 NKHRPFNLTATLSIRNTDPTDPIYITSVD---YYDTDGKLVRSYLDKPIYLKPLATTEFV 74 (125)
T ss_pred CCCceEeEEEEEEEEcCCCCCCEEEEEEE---EECCCCeEhHHhcCCCeEcCCCceEEEE
Confidence 45567889999999999886666543322 34 356666555567777777776653
No 30
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=46.75 E-value=25 Score=25.65 Aligned_cols=22 Identities=23% Similarity=0.351 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHhheeee
Q 027210 43 LIKIIVSAVLILGLAALIVWLI 64 (226)
Q Consensus 43 l~~~~l~l~~l~gi~~li~~lv 64 (226)
++++++++++++.++.+|.|++
T Consensus 64 ili~lls~v~IlVily~IyYFV 85 (101)
T PF06024_consen 64 ILISLLSFVCILVILYAIYYFV 85 (101)
T ss_pred hHHHHHHHHHHHHHHhhheEEE
Confidence 3445555556666666677765
No 31
>PF13807 GNVR: G-rich domain on putative tyrosine kinase
Probab=46.01 E-value=14 Score=25.58 Aligned_cols=16 Identities=25% Similarity=0.247 Sum_probs=9.0
Q ss_pred CCCcccCCCCCCCCCC
Q 027210 8 LNGAYYGPAVPPPTKH 23 (226)
Q Consensus 8 ~~~~~~~~~~~~~~~~ 23 (226)
.|-..-+|+.+|..+.
T Consensus 39 ~~~~ivd~A~~P~~P~ 54 (82)
T PF13807_consen 39 SNVRIVDPAIVPDKPV 54 (82)
T ss_pred CCceeccccccCCCCC
Confidence 3445677776664443
No 32
>cd01324 cbb3_Oxidase_CcoQ Cytochrome cbb oxidase CcoQ. Cytochrome cbb3 oxidase, the terminal oxidase in the respiratory chains of proteobacteria, is a multi-chain transmembrane protein located in the cell membrane. Like other cytochrome oxidases, it catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. Found exclusively in proteobacteria, cbb3 is believed to be a modern enzyme that has evolved independently to perform a specialized function in microaerobic energy metabolism. The cbb3 operon contains four genes (ccoNOQP or fixNOQP), with ccoN coding for subunit I. Instead of a CuA-containing subunit II analogous to other cytochrome oxidases, cbb3 utilizes subunits ccoO and ccoP, which contain one and two hemes, respectively, to transfer electrons to the binuclear center. ccoQ, the fourth subunit, is a single transmembrane helix protein. It has been shown to protect the core complex from proteolytic degradation by serine proteases. See cd00919, cd01322
Probab=45.34 E-value=18 Score=22.75 Aligned_cols=23 Identities=17% Similarity=0.092 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHhheeeeeeCCC
Q 027210 46 IIVSAVLILGLAALIVWLIFRPIN 69 (226)
Q Consensus 46 ~~l~l~~l~gi~~li~~lvlrP~~ 69 (226)
..++++.++++.+++++.+++| +
T Consensus 12 ~~~~l~~~~~~Figiv~wa~~p-~ 34 (48)
T cd01324 12 DSWGLLYLALFFLGVVVWAFRP-G 34 (48)
T ss_pred HHHHHHHHHHHHHHHHHHHhCC-C
Confidence 3344555566666666667888 5
No 33
>PF04573 SPC22: Signal peptidase subunit; InterPro: IPR007653 Translocation of polypeptide chains across the endoplasmic reticulum membrane is triggered by signal sequences. During translocation of the nascent chain through the membrane, the signal sequence of most secretory and membrane proteins is cleaved off. Cleavage occurs by the signal peptidase complex (SPC), which consists of four subunits in yeast and five in mammals. This family is is described as similar to microsomal signal peptidase 23 kDa subunit. Found in eukaryotes [, ].; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=44.85 E-value=1e+02 Score=24.84 Aligned_cols=11 Identities=18% Similarity=0.522 Sum_probs=5.6
Q ss_pred eeCCCccEEEEe
Q 027210 65 FRPINKVKFHVT 76 (226)
Q Consensus 65 lrP~~~P~f~v~ 76 (226)
+.+ ..|..++.
T Consensus 32 ~~~-~~~~~~i~ 42 (175)
T PF04573_consen 32 FHP-PSPSVSIS 42 (175)
T ss_pred ccC-CCCceEEE
Confidence 555 55555443
No 34
>PRK06531 yajC preprotein translocase subunit YajC; Validated
Probab=44.60 E-value=14 Score=27.75 Aligned_cols=12 Identities=17% Similarity=0.396 Sum_probs=7.6
Q ss_pred HhheeeeeeCCCc
Q 027210 58 ALIVWLIFRPINK 70 (226)
Q Consensus 58 ~li~~lvlrP~~~ 70 (226)
++++|+.+|| ..
T Consensus 13 ~~i~yf~iRP-Qk 24 (113)
T PRK06531 13 LGLIFFMQRQ-QK 24 (113)
T ss_pred HHHHHheech-HH
Confidence 3345677999 53
No 35
>KOG3927 consensus Na+/K+ ATPase, beta subunit [Inorganic ion transport and metabolism]
Probab=44.09 E-value=31 Score=30.38 Aligned_cols=36 Identities=14% Similarity=0.300 Sum_probs=22.2
Q ss_pred HHHHHHHHHhheee---eeeCCCccEEEEeeEEEeeEeecC
Q 027210 50 AVLILGLAALIVWL---IFRPINKVKFHVTDASLTEFNLTS 87 (226)
Q Consensus 50 l~~l~gi~~li~~l---vlrP~~~P~f~v~s~~v~~~~~~~ 87 (226)
-+++++++++.+|+ .+-| +.|.+. ++..=.++.+.+
T Consensus 55 Y~~la~lf~~~~~~~~~tidp-~~P~~~-~~~~~PGl~~~P 93 (300)
T KOG3927|consen 55 YGVLAALFAGCMWFMLQTIDP-KVPKYK-DSGANPGLSFRP 93 (300)
T ss_pred HHHHHHHHHHHHHHHHHhcCC-CCCccc-ccCCCCceeecC
Confidence 34555555555565 3789 999999 554434555543
No 36
>PF07787 DUF1625: Protein of unknown function (DUF1625); InterPro: IPR012430 Sequences making up this family are derived from hypothetical proteins expressed by both prokaryotic and eukaryotic species. The region in question is approximately 250 residues long.
Probab=42.18 E-value=30 Score=29.27 Aligned_cols=18 Identities=28% Similarity=0.695 Sum_probs=12.5
Q ss_pred HHHHHHHHHhheeeeeeC
Q 027210 50 AVLILGLAALIVWLIFRP 67 (226)
Q Consensus 50 l~~l~gi~~li~~lvlrP 67 (226)
.+.+..+++.+.|+.+||
T Consensus 231 s~~lsl~~Ia~aW~~yRP 248 (248)
T PF07787_consen 231 SFSLSLLTIALAWLFYRP 248 (248)
T ss_pred HHHHHHHHHHHhheeeCc
Confidence 344445566778999998
No 37
>PF12505 DUF3712: Protein of unknown function (DUF3712); InterPro: IPR022185 This domain family is found in eukaryotes, and is approximately 130 amino acids in length.
Probab=41.96 E-value=68 Score=23.98 Aligned_cols=27 Identities=15% Similarity=0.327 Sum_probs=20.1
Q ss_pred eeEEEEEEEEEeCCCCeeEEEEceeEEE
Q 027210 91 LNYKLALNITIRNPNKKIGVHYDRIEAR 118 (226)
Q Consensus 91 l~~~l~~~l~~~NPN~~~~i~Y~~~~v~ 118 (226)
-..++..++.+.||.. +++..+.+.+.
T Consensus 98 ~g~~~~~~~~l~NPS~-~ti~lG~v~~~ 124 (125)
T PF12505_consen 98 DGINLNATVTLPNPSP-LTIDLGNVTLN 124 (125)
T ss_pred CcEEEEEEEEEcCCCe-EEEEeccEEEe
Confidence 3566788888899997 88877766554
No 38
>PRK00523 hypothetical protein; Provisional
Probab=41.54 E-value=34 Score=23.52 Aligned_cols=22 Identities=18% Similarity=-0.081 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhe
Q 027210 40 FTLLIKIIVSAVLILGLAALIV 61 (226)
Q Consensus 40 ~~~l~~~~l~l~~l~gi~~li~ 61 (226)
|.++++.+.++.+++|+++..+
T Consensus 3 ~~~l~I~l~i~~li~G~~~Gff 24 (72)
T PRK00523 3 AIGLALGLGIPLLIVGGIIGYF 24 (72)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555566666665544
No 39
>PRK07021 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=39.55 E-value=1.2e+02 Score=23.90 Aligned_cols=17 Identities=6% Similarity=-0.060 Sum_probs=10.4
Q ss_pred EEEEceeEEEEEECCEE
Q 027210 109 GVHYDRIEARVYYDDKR 125 (226)
Q Consensus 109 ~i~Y~~~~v~v~Y~g~~ 125 (226)
+-+|=.+++.+.+.+..
T Consensus 77 ~~rylkv~i~L~~~~~~ 93 (162)
T PRK07021 77 ADRVLYVGLTLRLPDEA 93 (162)
T ss_pred CceEEEEEEEEEECCHH
Confidence 34666666777666543
No 40
>PF00927 Transglut_C: Transglutaminase family, C-terminal ig like domain; InterPro: IPR008958 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Transglutaminases catalyse the post-translational modification of proteins at glutamine residues, with formation of isopeptide bonds. Members of the transglutaminase family usually have three domains: N-terminal (IPR001102 from INTERPRO), middle (IPR013808 from INTERPRO) and C-terminal. The middle domain is usually well conserved, but family members can display major differences in their N- and C-terminal domains, although their overall structure is conserved []. This entry represents the C-terminal domain found in transglutaminases, which consists of an immunoglobulin-like beta-sandwich consisting of seven strands in two sheets with a Greek key topology. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. Protein-glutamine gamma-glutamyltransferases (2.3.2.13 from EC) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ].; GO: 0003810 protein-glutamine gamma-glutamyltransferase activity, 0018149 peptide cross-linking; PDB: 2XZZ_A 1GGY_B 1FIE_B 1GGU_B 1GGT_B 1F13_A 1QRK_B 1EVU_A 1EX0_B 1L9N_B ....
Probab=39.47 E-value=75 Score=22.81 Aligned_cols=60 Identities=8% Similarity=0.047 Sum_probs=34.3
Q ss_pred CeeeEEEEEEEEEeCCCCeeEEEE---ceeEEEEEECCEEee--cccCCCeeecCCCeEEEEEEEE
Q 027210 89 NNLNYKLALNITIRNPNKKIGVHY---DRIEARVYYDDKRLT--SVPLTPFYQGHKNTSYLNPVFE 149 (226)
Q Consensus 89 ~~l~~~l~~~l~~~NPN~~~~i~Y---~~~~v~v~Y~g~~lg--~~~vp~f~q~~~~~~~v~~~l~ 149 (226)
..+.-++++.++++||.. ..++- .=....+.|.|.... .........+|+++..+...+.
T Consensus 11 ~~vG~d~~v~v~~~N~~~-~~l~~v~~~l~~~~v~ytG~~~~~~~~~~~~~~l~p~~~~~~~~~i~ 75 (107)
T PF00927_consen 11 PVVGQDFTVSVSFTNPSS-EPLRNVSLNLCAFTVEYTGLTRDQFKKEKFEVTLKPGETKSVEVTIT 75 (107)
T ss_dssp EBTTSEEEEEEEEEE-SS-S-EECEEEEEEEEEEECTTTEEEEEEEEEEEEEE-TTEEEEEEEEE-
T ss_pred ccCCCCEEEEEEEEeCCc-CccccceeEEEEEEEEECCcccccEeEEEcceeeCCCCEEEEEEEEE
Confidence 345667888999999976 33222 113455678887542 2334556666777776665553
No 41
>COG1580 FliL Flagellar basal body-associated protein [Cell motility and secretion]
Probab=39.36 E-value=1.2e+02 Score=24.16 Aligned_cols=22 Identities=23% Similarity=0.394 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHhheeeee
Q 027210 44 IKIIVSAVLILGLAALIVWLIF 65 (226)
Q Consensus 44 ~~~~l~l~~l~gi~~li~~lvl 65 (226)
.++++++++++|+.+..+|+..
T Consensus 21 ~liv~ivl~~~a~~~~~~~~~~ 42 (159)
T COG1580 21 LLIVLIVLLALAGAGYFFWFGS 42 (159)
T ss_pred HHHHHHHHHHHHHHHHHHhhhc
Confidence 3455556666677777777764
No 42
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=38.86 E-value=20 Score=31.63 Aligned_cols=20 Identities=40% Similarity=0.712 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHhheeeeee
Q 027210 47 IVSAVLILGLAALIVWLIFR 66 (226)
Q Consensus 47 ~l~l~~l~gi~~li~~lvlr 66 (226)
.+++++++.++++|+||++|
T Consensus 261 SiiaIliIVLIMvIIYLILR 280 (299)
T PF02009_consen 261 SIIAILIIVLIMVIIYLILR 280 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33445566677888888865
No 43
>KOG4331 consensus Polytopic membrane protein Prominin [General function prediction only]
Probab=36.67 E-value=29 Score=34.61 Aligned_cols=12 Identities=25% Similarity=0.219 Sum_probs=4.6
Q ss_pred HHHHHHHHhhee
Q 027210 51 VLILGLAALIVW 62 (226)
Q Consensus 51 ~~l~gi~~li~~ 62 (226)
++.+++++.|++
T Consensus 161 vl~i~~ligv~~ 172 (865)
T KOG4331|consen 161 VLAIELLIGVFR 172 (865)
T ss_pred HHHHHHHHHHHH
Confidence 333333333433
No 44
>PHA02844 putative transmembrane protein; Provisional
Probab=35.67 E-value=40 Score=23.29 Aligned_cols=13 Identities=8% Similarity=0.317 Sum_probs=5.9
Q ss_pred HHHHHHHHhheee
Q 027210 51 VLILGLAALIVWL 63 (226)
Q Consensus 51 ~~l~gi~~li~~l 63 (226)
+++++++...+||
T Consensus 57 ~v~~~~~~~flYL 69 (75)
T PHA02844 57 FVVFATFLTFLYL 69 (75)
T ss_pred HHHHHHHHHHHHH
Confidence 3344444445555
No 45
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=35.66 E-value=30 Score=27.42 Aligned_cols=21 Identities=29% Similarity=0.540 Sum_probs=14.7
Q ss_pred HHHHHHHHhheeeeeeCCCccE
Q 027210 51 VLILGLAALIVWLIFRPINKVK 72 (226)
Q Consensus 51 ~~l~gi~~li~~lvlrP~~~P~ 72 (226)
.++++++++++|+..|+ +.=.
T Consensus 61 ~ill~il~lvf~~c~r~-kktd 81 (154)
T PF04478_consen 61 PILLGILALVFIFCIRR-KKTD 81 (154)
T ss_pred HHHHHHHHhheeEEEec-ccCc
Confidence 44556777788888888 7543
No 46
>PHA02650 hypothetical protein; Provisional
Probab=35.56 E-value=30 Score=24.19 Aligned_cols=13 Identities=15% Similarity=0.008 Sum_probs=5.9
Q ss_pred HHHHHHHHhheee
Q 027210 51 VLILGLAALIVWL 63 (226)
Q Consensus 51 ~~l~gi~~li~~l 63 (226)
+++++++...+||
T Consensus 58 ~v~i~~l~~flYL 70 (81)
T PHA02650 58 SLIIVALFSFFVF 70 (81)
T ss_pred HHHHHHHHHHHHH
Confidence 3344444445555
No 47
>PF12505 DUF3712: Protein of unknown function (DUF3712); InterPro: IPR022185 This domain family is found in eukaryotes, and is approximately 130 amino acids in length.
Probab=35.07 E-value=1.9e+02 Score=21.51 Aligned_cols=62 Identities=10% Similarity=0.108 Sum_probs=33.8
Q ss_pred EeecccCCCeeecCCCeEEE-EEEEEeceecchhHHHHHHhhh-cCCeEEEEEEEEEEEEEEEeeEecC
Q 027210 125 RLTSVPLTPFYQGHKNTSYL-NPVFEGQQILLGGALRDYNKEN-NAGVFSIDVKLKLKVRFKLGKIKTP 191 (226)
Q Consensus 125 ~lg~~~vp~f~q~~~~~~~v-~~~l~~~~v~l~~~~~~l~~d~-~~G~v~~~v~v~~~vr~~vg~~~~~ 191 (226)
++|...+|+....+.++..+ +..+...+ .++..++.++. ....+.+.++ ++.+.++|.+...
T Consensus 2 ~f~~~~lP~~~~~~~~~~~~~~~~l~i~d---~~~f~~f~~~~~~~~~~~l~l~--g~~~~~~g~l~~~ 65 (125)
T PF12505_consen 2 PFATLDLPQIKIKGNGTISIIDQTLTITD---QDAFTQFVTALLFNEEVTLTLR--GKTDTHLGGLPFS 65 (125)
T ss_pred ceEEEECCCEEecCCceEEEeeeeEEecC---HHHHHHHHHHHHhCCcEEEEEE--EeeeEEEccEEEE
Confidence 46788899988832222222 22232221 34556666664 4445555544 4457778877544
No 48
>PF09865 DUF2092: Predicted periplasmic protein (DUF2092); InterPro: IPR019207 This entry represents various hypothetical prokaryotic proteins of unknown function.
Probab=34.98 E-value=2.7e+02 Score=23.22 Aligned_cols=39 Identities=23% Similarity=0.533 Sum_probs=31.7
Q ss_pred CCeeeEEEEEEEEEeCCCCeeEEEEc--eeEEEEEECCEEee
Q 027210 88 NNNLNYKLALNITIRNPNKKIGVHYD--RIEARVYYDDKRLT 127 (226)
Q Consensus 88 ~~~l~~~l~~~l~~~NPN~~~~i~Y~--~~~v~v~Y~g~~lg 127 (226)
...+...-+.++.++=||+ +.+.+. ..+..++|+|..+.
T Consensus 34 gqklq~~~~~~v~v~RPdk-lr~~~~gd~~~~~~~yDGkt~T 74 (214)
T PF09865_consen 34 GQKLQFSSSGTVTVQRPDK-LRIDRRGDGADREFYYDGKTFT 74 (214)
T ss_pred CceEEEEEEEEEEEeCCCe-EEEEEEcCCcceEEEECCCEEE
Confidence 3567788889999999997 999994 35688999998754
No 49
>PTZ00116 signal peptidase; Provisional
Probab=34.80 E-value=1.6e+02 Score=24.02 Aligned_cols=44 Identities=16% Similarity=0.153 Sum_probs=20.9
Q ss_pred CccEEEEeeEEEeeEeecC---C--CeeeEEEEEEEEE-eCCCCeeEEEE
Q 027210 69 NKVKFHVTDASLTEFNLTS---N--NNLNYKLALNITI-RNPNKKIGVHY 112 (226)
Q Consensus 69 ~~P~f~v~s~~v~~~~~~~---~--~~l~~~l~~~l~~-~NPN~~~~i~Y 112 (226)
..|..+++=..+.++...+ + ..++.+++..|+- -|=|.|.=+-|
T Consensus 37 ~~~~~~i~v~~V~~~~~~~~~~~D~a~i~fdl~~DL~~lfnWNtKqlFvy 86 (185)
T PTZ00116 37 KEMSTNIKVKSVKRLVYNRHIKGDEAVLSLDLSYDMSKAFNWNLKQLFLY 86 (185)
T ss_pred CCceeeEEEeecccccccCCCCceeEEEEEeeccCchhcCCccccEEEEE
Confidence 5565666655556665433 1 1344444444432 25555544433
No 50
>PF06092 DUF943: Enterobacterial putative membrane protein (DUF943); InterPro: IPR010351 This family consists of several hypothetical proteins from Escherichia coli, Yersinia pestis and Salmonella typhi.
Probab=34.00 E-value=31 Score=27.47 Aligned_cols=17 Identities=29% Similarity=0.829 Sum_probs=11.9
Q ss_pred HHHHHHHHhheeeeeeC
Q 027210 51 VLILGLAALIVWLIFRP 67 (226)
Q Consensus 51 ~~l~gi~~li~~lvlrP 67 (226)
++++|+++.++|+.+||
T Consensus 12 l~l~~~~~y~~W~~~rp 28 (157)
T PF06092_consen 12 LFLLACILYFLWLTLRP 28 (157)
T ss_pred HHHHHHHHHhhhhccCC
Confidence 44445444788989999
No 51
>PF15012 DUF4519: Domain of unknown function (DUF4519)
Probab=33.81 E-value=44 Score=21.81 Aligned_cols=15 Identities=27% Similarity=0.540 Sum_probs=9.7
Q ss_pred HHHHHHhheeeeeeC
Q 027210 53 ILGLAALIVWLIFRP 67 (226)
Q Consensus 53 l~gi~~li~~lvlrP 67 (226)
++.++++++|+..||
T Consensus 41 ~~~~Ivv~vy~kTRP 55 (56)
T PF15012_consen 41 VFLFIVVFVYLKTRP 55 (56)
T ss_pred HHHHHhheeEEeccC
Confidence 333455677788888
No 52
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=32.93 E-value=33 Score=21.35 Aligned_cols=18 Identities=33% Similarity=0.434 Sum_probs=10.2
Q ss_pred HHHHHHHHhheeeeeeCCC
Q 027210 51 VLILGLAALIVWLIFRPIN 69 (226)
Q Consensus 51 ~~l~gi~~li~~lvlrP~~ 69 (226)
+++.++.++++|.+++| +
T Consensus 16 v~~~~~F~gi~~w~~~~-~ 33 (49)
T PF05545_consen 16 VLFFVFFIGIVIWAYRP-R 33 (49)
T ss_pred HHHHHHHHHHHHHHHcc-c
Confidence 34444445555567788 6
No 53
>PF10907 DUF2749: Protein of unknown function (DUF2749); InterPro: IPR024475 This bacterial family of proteins represent the TrbJ and TrbK genes of the Ti plasmid conjugative transfer operon [].
Probab=32.86 E-value=47 Score=22.34 Aligned_cols=16 Identities=25% Similarity=0.659 Sum_probs=12.0
Q ss_pred HHHHHHhheeeeeeCCC
Q 027210 53 ILGLAALIVWLIFRPIN 69 (226)
Q Consensus 53 l~gi~~li~~lvlrP~~ 69 (226)
+.+.+..+.|++.+| +
T Consensus 13 vaa~a~~atwviVq~-~ 28 (66)
T PF10907_consen 13 VAAAAGAATWVIVQP-R 28 (66)
T ss_pred HHhhhceeEEEEECC-C
Confidence 445566778889999 7
No 54
>COG1589 FtsQ Cell division septal protein [Cell envelope biogenesis, outer membrane]
Probab=32.71 E-value=61 Score=27.80 Aligned_cols=34 Identities=18% Similarity=0.378 Sum_probs=25.1
Q ss_pred HHHHHHHHHhheeeeeeCCCccEEEEeeEEEeeEe
Q 027210 50 AVLILGLAALIVWLIFRPINKVKFHVTDASLTEFN 84 (226)
Q Consensus 50 l~~l~gi~~li~~lvlrP~~~P~f~v~s~~v~~~~ 84 (226)
.++++++.++++|....+ +.|.|.+..+.+++=.
T Consensus 38 ~~~~~~~~~~~~~~~~~~-~~~~~~i~~v~v~Gn~ 71 (269)
T COG1589 38 YLVLLLLVLVVLWVLILL-SLPYFPIRKVSVSGNN 71 (269)
T ss_pred HHHHHHHHHHHHheehhh-hcCCccceEEEEecCc
Confidence 344555566677888888 8899999999998733
No 55
>PF04790 Sarcoglycan_1: Sarcoglycan complex subunit protein; InterPro: IPR006875 The dystrophin glycoprotein complex (DGC) is a membrane-spanning complex that links the interior cytoskeleton to the extracellular matrix in muscle. The sarcoglycan complex is a subcomplex within the DGC and is composed of several muscle-specific, transmembrane proteins (alpha-, beta-, gamma-, delta- and zeta-sarcoglycan). The sarcoglycans are asparagine-linked glycosylated proteins with single transmembrane domains. This family contains beta, gamma and delta members [, ].; GO: 0007010 cytoskeleton organization, 0016012 sarcoglycan complex, 0016021 integral to membrane
Probab=31.87 E-value=3.4e+02 Score=23.44 Aligned_cols=18 Identities=17% Similarity=0.235 Sum_probs=11.9
Q ss_pred eeeEEEEEEEEEeCCCCe
Q 027210 90 NLNYKLALNITIRNPNKK 107 (226)
Q Consensus 90 ~l~~~l~~~l~~~NPN~~ 107 (226)
.+..+=++++.++|.|..
T Consensus 83 ~i~s~~~v~~~~r~~~g~ 100 (264)
T PF04790_consen 83 VIQSSRNVTLNARNENGS 100 (264)
T ss_pred EEEecCceEEEEecCCCc
Confidence 344444677888888875
No 56
>PF06837 Fijivirus_P9-2: Fijivirus P9-2 protein; InterPro: IPR009650 This family consists of several Fijivirus specific P9-2 proteins from Rice black streaked dwarf virus (RBSDV) and Fiji disease virus. The function of this family is unknown.
Probab=31.52 E-value=38 Score=27.74 Aligned_cols=21 Identities=19% Similarity=0.447 Sum_probs=9.8
Q ss_pred cccchhHHHHHHHHHHHHHHH
Q 027210 33 CGGCCCLFTLLIKIIVSAVLI 53 (226)
Q Consensus 33 c~~ccc~~~~l~~~~l~l~~l 53 (226)
|=||--+.+++|.++..+++-
T Consensus 106 cV~CNpl~R~~~SivfTi~fy 126 (214)
T PF06837_consen 106 CVCCNPLIRGIFSIVFTILFY 126 (214)
T ss_pred hhhcChHHHHHHHHHHHHHHH
Confidence 434433555555555444433
No 57
>PF14654 Epiglycanin_C: Mucin, catalytic, TM and cytoplasmic tail region
Probab=31.33 E-value=45 Score=24.32 Aligned_cols=25 Identities=20% Similarity=0.457 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhheeee
Q 027210 40 FTLLIKIIVSAVLILGLAALIVWLI 64 (226)
Q Consensus 40 ~~~l~~~~l~l~~l~gi~~li~~lv 64 (226)
|.++++.|..+++.+|+.+.+++.+
T Consensus 18 WeIfLItLasVvvavGl~aGLfFcv 42 (106)
T PF14654_consen 18 WEIFLITLASVVVAVGLFAGLFFCV 42 (106)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7888888888888888887777544
No 58
>PF14927 Neurensin: Neurensin
Probab=30.33 E-value=1.1e+02 Score=23.77 Aligned_cols=20 Identities=35% Similarity=0.456 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHhheeeeeeC
Q 027210 47 IVSAVLILGLAALIVWLIFRP 67 (226)
Q Consensus 47 ~l~l~~l~gi~~li~~lvlrP 67 (226)
+-++++++|++++++-.. -|
T Consensus 50 ~g~l~Ll~Gi~~l~vgY~-vP 69 (140)
T PF14927_consen 50 SGLLLLLLGIVALTVGYL-VP 69 (140)
T ss_pred HHHHHHHHHHHHHHhhcc-cC
Confidence 334556677666555433 35
No 59
>COG3008 PqiB Paraquat-inducible protein B [General function prediction only]
Probab=30.18 E-value=1e+02 Score=29.41 Aligned_cols=31 Identities=10% Similarity=0.053 Sum_probs=20.4
Q ss_pred HHHHhheeeeeeCCCccEEEEeeEEEeeEeec
Q 027210 55 GLAALIVWLIFRPINKVKFHVTDASLTEFNLT 86 (226)
Q Consensus 55 gi~~li~~lvlrP~~~P~f~v~s~~v~~~~~~ 86 (226)
.+.+.++|-.++- +=|++++.=.+-.++..+
T Consensus 32 ~igawL~~~~~~~-~G~~Itl~f~saeGIeaG 62 (553)
T COG3008 32 LIGAWLLFQHVQD-RGPEITLTFESAEGIEAG 62 (553)
T ss_pred HHHHHHHHHHHHh-cCCeEEEEecCccccccC
Confidence 3444445557777 889998877666666554
No 60
>PRK11486 flagellar biosynthesis protein FliO; Provisional
Probab=29.95 E-value=38 Score=25.84 Aligned_cols=24 Identities=25% Similarity=0.487 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHhheeeeee
Q 027210 43 LIKIIVSAVLILGLAALIVWLIFR 66 (226)
Q Consensus 43 l~~~~l~l~~l~gi~~li~~lvlr 66 (226)
|..++..++++++++.++.|++=|
T Consensus 18 l~qv~~~L~lVl~lI~~~aWLlkR 41 (124)
T PRK11486 18 LLQVSGALIGIIALILAAAWLVKR 41 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666777888888888898754
No 61
>PF15145 DUF4577: Domain of unknown function (DUF4577)
Probab=29.92 E-value=58 Score=24.38 Aligned_cols=22 Identities=23% Similarity=0.650 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHhheeeeeeC
Q 027210 46 IIVSAVLILGLAALIVWLIFRP 67 (226)
Q Consensus 46 ~~l~l~~l~gi~~li~~lvlrP 67 (226)
.++++++.++++.++++|+++-
T Consensus 67 lii~LivSLaLVsFvIFLiiQT 88 (128)
T PF15145_consen 67 LIIVLIVSLALVSFVIFLIIQT 88 (128)
T ss_pred HHHHHHHHHHHHHHHHHheeec
Confidence 3445566777788888887765
No 62
>PF05399 EVI2A: Ectropic viral integration site 2A protein (EVI2A); InterPro: IPR008608 This family contains several mammalian ectropic viral integration site 2A (EVI2A) proteins. The function of this protein is unknown although it is thought to be a membrane protein and may function as an oncogene in retrovirus induced myeloid tumours [, ].; GO: 0016021 integral to membrane
Probab=29.68 E-value=58 Score=27.22 Aligned_cols=26 Identities=12% Similarity=0.308 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhheeeee
Q 027210 40 FTLLIKIIVSAVLILGLAALIVWLIF 65 (226)
Q Consensus 40 ~~~l~~~~l~l~~l~gi~~li~~lvl 65 (226)
.-++|+|++++++|++.++|+.-.|+
T Consensus 129 amLIClIIIAVLfLICT~LfLSTVVL 154 (227)
T PF05399_consen 129 AMLICLIIIAVLFLICTLLFLSTVVL 154 (227)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566677777777776655543333
No 63
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=29.63 E-value=45 Score=24.14 Aligned_cols=15 Identities=27% Similarity=0.149 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHhhee
Q 027210 48 VSAVLILGLAALIVW 62 (226)
Q Consensus 48 l~l~~l~gi~~li~~ 62 (226)
|+|.+++++++||..
T Consensus 7 llL~l~LA~lLlisS 21 (95)
T PF07172_consen 7 LLLGLLLAALLLISS 21 (95)
T ss_pred HHHHHHHHHHHHHHh
Confidence 334444444444443
No 64
>PRK13150 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=29.34 E-value=1.6e+02 Score=23.41 Aligned_cols=9 Identities=22% Similarity=0.375 Sum_probs=4.8
Q ss_pred EEEEEECCE
Q 027210 116 EARVYYDDK 124 (226)
Q Consensus 116 ~v~v~Y~g~ 124 (226)
++.|.|.|.
T Consensus 90 ~v~V~Y~Gi 98 (159)
T PRK13150 90 SVTVSYEGI 98 (159)
T ss_pred EEEEEEecc
Confidence 455556553
No 65
>PF05473 Herpes_UL45: UL45 protein; InterPro: IPR008646 This family consists several UL45 proteins and homologues found in the herpes simplex virus family. The herpes simplex virus UL45 gene encodes an 18 kDa virion envelope protein whose function remains unknown. It has been suggested that the 18 kDa UL45 gene product is required for efficient growth in the central nervous system at low doses and may play an important role under the conditions of a naturally acquired infection []. The Equine herpesvirus 1 UL45 protein represents a type II membrane glycoprotein which has found to be non-essential for EHV-1 growth in vitro but deletion reduces the viruses' replication efficiency [].
Probab=29.30 E-value=1.5e+02 Score=24.34 Aligned_cols=22 Identities=18% Similarity=0.543 Sum_probs=12.4
Q ss_pred CCCCCcccchhHHHHHHHHHHH
Q 027210 28 GRGGGCGGCCCLFTLLIKIIVS 49 (226)
Q Consensus 28 ~~~~~c~~ccc~~~~l~~~~l~ 49 (226)
++.++=..|.|+..+++.++++
T Consensus 38 ~~~~~~s~~~~~~~~~~~~~~G 59 (200)
T PF05473_consen 38 RREKRKSPCACFLFIICGILIG 59 (200)
T ss_pred cccccCCCcccHHHHHHHHHHH
Confidence 3555556788855555444443
No 66
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=28.96 E-value=32 Score=26.21 Aligned_cols=9 Identities=22% Similarity=0.667 Sum_probs=3.4
Q ss_pred HHHHHHHhh
Q 027210 52 LILGLAALI 60 (226)
Q Consensus 52 ~l~gi~~li 60 (226)
+++|+++.|
T Consensus 73 v~aGvIg~I 81 (122)
T PF01102_consen 73 VMAGVIGII 81 (122)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 67
>COG1463 Ttg2C ABC-type transport system involved in resistance to organic solvents, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=28.57 E-value=1.4e+02 Score=26.82 Aligned_cols=13 Identities=23% Similarity=0.355 Sum_probs=9.2
Q ss_pred EEEECCEEeeccc
Q 027210 118 RVYYDDKRLTSVP 130 (226)
Q Consensus 118 ~v~Y~g~~lg~~~ 130 (226)
.|.|+|..+|...
T Consensus 58 ~V~~~GV~VG~V~ 70 (359)
T COG1463 58 PVRYRGVKVGKVA 70 (359)
T ss_pred ceEEcCEEeEEEE
Confidence 4677888888654
No 68
>PF10669 Phage_Gp23: Protein gp23 (Bacteriophage A118); InterPro: IPR018926 This entry is represented by the major tail subunit protein, Gp23 of Listeria phage A118 and prophage found in Bacilli. The function is currently unknown.
Probab=28.32 E-value=86 Score=22.89 Aligned_cols=9 Identities=22% Similarity=0.696 Sum_probs=3.5
Q ss_pred HHHHHHHHH
Q 027210 40 FTLLIKIIV 48 (226)
Q Consensus 40 ~~~l~~~~l 48 (226)
|++|+++++
T Consensus 19 FA~L~i~~F 27 (121)
T PF10669_consen 19 FAFLFIVVF 27 (121)
T ss_pred HHHHHHHHH
Confidence 344443333
No 69
>PF05170 AsmA: AsmA family; InterPro: IPR007844 The AsmA protein is involved in the assembly of outer membrane proteins in Escherichia coli []. AsmA mutations were isolated as extragenic suppressors of an OmpF assembly mutant []. AsmA may have a role in LPS biogenesis [].
Probab=27.69 E-value=2.6e+02 Score=26.59 Aligned_cols=93 Identities=12% Similarity=0.182 Sum_probs=42.6
Q ss_pred EEEEeeEEEeeEeecCCCeeeEEEEEEEEEeCCCCeeEEEEceeEEEEEECCEEeecccCCCeeecCCCeEEEEEEEEec
Q 027210 72 KFHVTDASLTEFNLTSNNNLNYKLALNITIRNPNKKIGVHYDRIEARVYYDDKRLTSVPLTPFYQGHKNTSYLNPVFEGQ 151 (226)
Q Consensus 72 ~f~v~s~~v~~~~~~~~~~l~~~l~~~l~~~NPN~~~~i~Y~~~~v~v~Y~g~~lg~~~vp~f~q~~~~~~~v~~~l~~~ 151 (226)
++++.++++.++.++ ++.+.+++-+.++.+ +++.+.+ |+|..=|.+.+-.-.++ ..++....++
T Consensus 441 ~l~~~~l~~~~l~i~---------~~~~~~~~~~G~l~l--~~l~~~l-~~G~~~~~~~ld~~~~~----~~~~~~~~~~ 504 (604)
T PF05170_consen 441 TLSAGSLKANGLPIS---------NLKLQLKAKDGLLTL--DPLSAKL-YGGSLSGSASLDARQDP----PQYSLNLNLR 504 (604)
T ss_pred EEEhhheEECCceec---------ccEEEEEecCCeEEE--eeeeEec-CCcEEEEEEEEeccCCC----ccEEEeeeeC
Confidence 455555555555444 122334444443333 3445554 66665555554432122 2344455556
Q ss_pred eecchhHHHHHHh-hhcCCeEEEEEEEEEE
Q 027210 152 QILLGGALRDYNK-ENNAGVFSIDVKLKLK 180 (226)
Q Consensus 152 ~v~l~~~~~~l~~-d~~~G~v~~~v~v~~~ 180 (226)
++++.....++.. +.-.|...+++.+++.
T Consensus 505 ~v~l~~Ll~~~~~~~~l~G~~~~~~~l~g~ 534 (604)
T PF05170_consen 505 GVQLQPLLQDLALPDPLSGTGDLNLDLTGQ 534 (604)
T ss_pred CcchHHHHhhhccccCceEEEEEEEEEEeC
Confidence 6665333233322 3345555555555544
No 70
>smart00831 Cation_ATPase_N Cation transporter/ATPase, N-terminus. This entry represents the conserved N-terminal region found in several classes of cation-transporting P-type ATPases, including those that transport H+, Na+, Ca2+, Na+/K+, and H+/K+. In the H+/K+- and Na+/K+-exchange P-ATPases, this domain is found in the catalytic alpha chain. In gastric H+/K+-ATPases, this domain undergoes reversible sequential phosphorylation inducing conformational changes that may be important for regulating the function of these ATPases PUBMED:12480547, PUBMED:12529322.
Probab=27.40 E-value=83 Score=20.18 Aligned_cols=8 Identities=50% Similarity=0.970 Sum_probs=5.3
Q ss_pred ccCCCCCC
Q 027210 12 YYGPAVPP 19 (226)
Q Consensus 12 ~~~~~~~~ 19 (226)
-|||+.-+
T Consensus 22 ~~G~N~l~ 29 (64)
T smart00831 22 RYGPNELP 29 (64)
T ss_pred HhCCCCCC
Confidence 58888533
No 71
>cd07912 Tweety_N N-terminal domain of the protein encoded by the Drosophila tweety gene and related proteins, a family of chloride ion channels. The protein product of the Drosophila tweety (tty) gene is thought to form a trans-membrane protein with five membrane-spanning regions and a cytoplasmic C-terminus. This N-terminal domain contains the putative transmembrane spanning regions. Tweety has been suggested as a candidate for a large conductance chloride channel, both in vertebrate and insect cells. Three human homologs have been identified and designated TTYH1-3. TTYH2 has been associated with the progression of cancer, and Drosophila melanogaster tweety has been assumed to play a role in development. TTYH2, and TTYH3 bind to and are ubiquinated by Nedd4-2, a HECT type E3 ubiquitin ligase, which most likely plays a role in controlling the cellular levels of tweety family proteins.
Probab=26.74 E-value=68 Score=29.67 Aligned_cols=7 Identities=29% Similarity=0.040 Sum_probs=3.4
Q ss_pred CCCCCCc
Q 027210 5 QAPLNGA 11 (226)
Q Consensus 5 ~~~~~~~ 11 (226)
-||.|..
T Consensus 14 lPh~n~~ 20 (418)
T cd07912 14 LPHLNFT 20 (418)
T ss_pred CCCCCce
Confidence 3555543
No 72
>PF14283 DUF4366: Domain of unknown function (DUF4366)
Probab=26.72 E-value=49 Score=27.75 Aligned_cols=9 Identities=11% Similarity=0.545 Sum_probs=6.4
Q ss_pred eeeCCCccEE
Q 027210 64 IFRPINKVKF 73 (226)
Q Consensus 64 vlrP~~~P~f 73 (226)
++|| |....
T Consensus 182 ~~K~-K~~~~ 190 (218)
T PF14283_consen 182 FYKP-KQEEK 190 (218)
T ss_pred Eecc-ccccc
Confidence 7899 76544
No 73
>PF11395 DUF2873: Protein of unknown function (DUF2873); InterPro: IPR021532 This entry is represented by the human SARS coronavirus, Orf7b; it is a family of uncharacterised viral proteins.
Probab=26.36 E-value=70 Score=19.06 Aligned_cols=10 Identities=20% Similarity=0.806 Sum_probs=5.0
Q ss_pred HHHhheeeee
Q 027210 56 LAALIVWLIF 65 (226)
Q Consensus 56 i~~li~~lvl 65 (226)
+...|+|+++
T Consensus 23 imliif~f~l 32 (43)
T PF11395_consen 23 IMLIIFWFSL 32 (43)
T ss_pred HHHHHHHHHH
Confidence 3344556554
No 74
>COG5353 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.34 E-value=42 Score=26.48 Aligned_cols=23 Identities=30% Similarity=0.491 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHhheeeeeeC
Q 027210 45 KIIVSAVLILGLAALIVWLIFRP 67 (226)
Q Consensus 45 ~~~l~l~~l~gi~~li~~lvlrP 67 (226)
+++.+++.+++.+++.+|...+|
T Consensus 11 ii~viflai~~s~~~~~~~s~~P 33 (161)
T COG5353 11 IILVIFLAIILSIALFFWKSMKP 33 (161)
T ss_pred hHHHHHHHHHHHHHHHHhHhcCc
Confidence 44455666667777888888888
No 75
>PF01708 Gemini_mov: Geminivirus putative movement protein ; InterPro: IPR002621 This family consists of putative movement proteins from Maize streak virus and Wheat dwarf virus [].; GO: 0046740 spread of virus in host, cell to cell, 0016021 integral to membrane
Probab=25.91 E-value=19 Score=25.82 Aligned_cols=10 Identities=40% Similarity=0.816 Sum_probs=6.7
Q ss_pred cccCCCCCCC
Q 027210 11 AYYGPAVPPP 20 (226)
Q Consensus 11 ~~~~~~~~~~ 20 (226)
.||.|.+|+.
T Consensus 16 ~y~~P~~p~~ 25 (91)
T PF01708_consen 16 SYQTPRVPTA 25 (91)
T ss_pred cccCCCCCCC
Confidence 3677887663
No 76
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=25.47 E-value=83 Score=31.57 Aligned_cols=27 Identities=11% Similarity=0.506 Sum_probs=11.8
Q ss_pred CCCCcccchhHHHHHHHHHHHHHHHHHHHH
Q 027210 29 RGGGCGGCCCLFTLLIKIIVSAVLILGLAA 58 (226)
Q Consensus 29 ~~~~c~~ccc~~~~l~~~~l~l~~l~gi~~ 58 (226)
++..|.++||.+. .+++.+++++|++.
T Consensus 133 ~~~~c~R~~l~~~---L~~~~~~il~g~i~ 159 (806)
T PF05478_consen 133 KNDACRRGCLGIL---LLLLTLIILFGVIC 159 (806)
T ss_pred cccccchHHHHHH---HHHHHHHHHHHHHH
Confidence 3345545555432 22333444555443
No 77
>KOG4298 consensus CAP-binding protein complex interacting protein 2 [RNA processing and modification]
Probab=25.31 E-value=1.2e+02 Score=24.92 Aligned_cols=32 Identities=19% Similarity=0.491 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhheeeeeeCCCcc
Q 027210 40 FTLLIKIIVSAVLILGLAALIVWLIFRPINKV 71 (226)
Q Consensus 40 ~~~l~~~~l~l~~l~gi~~li~~lvlrP~~~P 71 (226)
+++.|..++++++.++=++++.|.-+-|...|
T Consensus 148 laW~FST~iGllLFL~Ei~llcwvKF~~v~~P 179 (245)
T KOG4298|consen 148 LAWAFSTVIGLLLFLAEIVLLCWVKFLPVGYP 179 (245)
T ss_pred HHHHHHHHHHHHHHHHHHHHHheeeeecCCCc
Confidence 46677888888888888899999988785566
No 78
>PF06129 Chordopox_G3: Chordopoxvirus G3 protein; InterPro: IPR010367 This family consists of several poxvirus specific G3 proteins. The function of this family is unknown.
Probab=25.05 E-value=1.2e+02 Score=22.62 Aligned_cols=62 Identities=23% Similarity=0.397 Sum_probs=27.8
Q ss_pred eeeeeeCCCccEEEEeeEEEeeEeec-CCCeeeEEEEEEEEEeCCCC----eeEEEEce--eEEEEEECC
Q 027210 61 VWLIFRPINKVKFHVTDASLTEFNLT-SNNNLNYKLALNITIRNPNK----KIGVHYDR--IEARVYYDD 123 (226)
Q Consensus 61 ~~lvlrP~~~P~f~v~s~~v~~~~~~-~~~~l~~~l~~~l~~~NPN~----~~~i~Y~~--~~v~v~Y~g 123 (226)
.|+-+.|--+-+..+.+..-.+.-.. .+..+.. ..-++-..||+. .+..+|++ ..|.+.|+|
T Consensus 17 Y~~~y~PTNK~ql~v~~~~~~~~i~k~~d~~~~~-~~~t~lF~~~~~~~~~~v~l~Yds~~~~Vtv~~~~ 85 (109)
T PF06129_consen 17 YFFNYYPTNKMQLAVRELNYENAIIKQQDDNLPK-LLNTVLFLNPDKPVSSQVILYYDSRSGTVTVAYKN 85 (109)
T ss_pred HHHhhccchHHHHhhcccchhhHHHhcccccCcc-ceeeEEecCCCcccccceEEEEccCCCeEEEEECC
Confidence 44567782334444444332221111 1222222 334556778883 34555654 234555554
No 79
>COG4736 CcoQ Cbb3-type cytochrome oxidase, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=24.96 E-value=54 Score=21.72 Aligned_cols=15 Identities=13% Similarity=0.474 Sum_probs=9.3
Q ss_pred HHHHHhheeeeeeCCC
Q 027210 54 LGLAALIVWLIFRPIN 69 (226)
Q Consensus 54 ~gi~~li~~lvlrP~~ 69 (226)
....++++|.+||| +
T Consensus 19 ~l~fiavi~~ayr~-~ 33 (60)
T COG4736 19 TLFFIAVIYFAYRP-G 33 (60)
T ss_pred HHHHHHHHHHHhcc-c
Confidence 33444566778888 5
No 80
>COG3190 FliO Flagellar biogenesis protein [Cell motility and secretion]
Probab=24.82 E-value=43 Score=25.99 Aligned_cols=24 Identities=33% Similarity=0.623 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHhheeeeeeC
Q 027210 44 IKIIVSAVLILGLAALIVWLIFRP 67 (226)
Q Consensus 44 ~~~~l~l~~l~gi~~li~~lvlrP 67 (226)
+.++..++++++++.+..|++-|=
T Consensus 25 ~~~~gsL~~iL~lil~~~wl~kr~ 48 (137)
T COG3190 25 AQMFGSLILILALILFLAWLVKRL 48 (137)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667778888888888987554
No 81
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=24.74 E-value=2.5e+02 Score=19.60 Aligned_cols=54 Identities=13% Similarity=0.123 Sum_probs=30.0
Q ss_pred eEEEEEEEEEeCCCCeeEEEEceeEEEEEECCEEeecccCCCeeecCCCeEEEEEEEE
Q 027210 92 NYKLALNITIRNPNKKIGVHYDRIEARVYYDDKRLTSVPLTPFYQGHKNTSYLNPVFE 149 (226)
Q Consensus 92 ~~~l~~~l~~~NPN~~~~i~Y~~~~v~v~Y~g~~lg~~~vp~f~q~~~~~~~v~~~l~ 149 (226)
.-....+++++|... ...+|.=..-. ..+..+ ....+++...|+.+..+++.+.
T Consensus 19 g~~~~~~v~l~N~s~-~p~~f~v~~~~--~~~~~~-~v~~~~g~l~PG~~~~~~V~~~ 72 (102)
T PF14874_consen 19 GQTYSRTVTLTNTSS-IPARFRVRQPE--SLSSFF-SVEPPSGFLAPGESVELEVTFS 72 (102)
T ss_pred CCEEEEEEEEEECCC-CCEEEEEEeCC--cCCCCE-EEECCCCEECCCCEEEEEEEEE
Confidence 445567788889886 56655311100 011111 1122355677788888888887
No 82
>PHA03097 C-type lectin-like protein; Provisional
Probab=24.53 E-value=50 Score=26.01 Aligned_cols=24 Identities=21% Similarity=0.358 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHhheeeeeeC
Q 027210 44 IKIIVSAVLILGLAALIVWLIFRP 67 (226)
Q Consensus 44 ~~~~l~l~~l~gi~~li~~lvlrP 67 (226)
++++++...+++++++++.+.-+|
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~ 36 (157)
T PHA03097 13 WILVPCGSIIIALIALVIILSCKL 36 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcC
Confidence 344444444455555454455556
No 83
>PRK01844 hypothetical protein; Provisional
Probab=23.53 E-value=98 Score=21.27 Aligned_cols=16 Identities=19% Similarity=0.293 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHhhe
Q 027210 46 IIVSAVLILGLAALIV 61 (226)
Q Consensus 46 ~~l~l~~l~gi~~li~ 61 (226)
.+.++.+++|+++..+
T Consensus 8 ~l~I~~li~G~~~Gff 23 (72)
T PRK01844 8 LVGVVALVAGVALGFF 23 (72)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344455666655443
No 84
>PF12321 DUF3634: Protein of unknown function (DUF3634); InterPro: IPR022090 This family of proteins is found in bacteria. Proteins in this family are typically between 103 and 114 amino acids in length.
Probab=23.40 E-value=49 Score=24.62 Aligned_cols=16 Identities=44% Similarity=0.947 Sum_probs=8.3
Q ss_pred hheeeee--eCCCccEEEE
Q 027210 59 LIVWLIF--RPINKVKFHV 75 (226)
Q Consensus 59 li~~lvl--rP~~~P~f~v 75 (226)
+|+||++ |- ..|.|.|
T Consensus 11 li~~Lv~~~r~-~~~vf~i 28 (108)
T PF12321_consen 11 LIFWLVFVDRR-GLPVFEI 28 (108)
T ss_pred HHHHHHHcccc-CceEEEE
Confidence 6677653 42 2355543
No 85
>PF11770 GAPT: GRB2-binding adapter (GAPT); InterPro: IPR021082 This entry represents a family of transmembrane proteins which bind the growth factor receptor-bound protein 2 (GRB2) in B cells []. In contrast to other transmembrane adaptor proteins, GAPT, which this entry represents, is not phosphorylated upon BCR ligation. It associates with GRB2 constitutively through its proline-rich region [].
Probab=23.37 E-value=89 Score=24.70 Aligned_cols=18 Identities=22% Similarity=0.187 Sum_probs=10.0
Q ss_pred HHHHHHHHHhheeeeeeC
Q 027210 50 AVLILGLAALIVWLIFRP 67 (226)
Q Consensus 50 l~~l~gi~~li~~lvlrP 67 (226)
|++|+...++.+|..=+.
T Consensus 19 l~lLl~cgiGcvwhwkhr 36 (158)
T PF11770_consen 19 LLLLLLCGIGCVWHWKHR 36 (158)
T ss_pred HHHHHHHhcceEEEeecc
Confidence 334444556677765444
No 86
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=23.35 E-value=2.1e+02 Score=19.50 Aligned_cols=52 Identities=12% Similarity=0.338 Sum_probs=30.5
Q ss_pred eEEEEEEEEEeCCCCeeEEEEceeEEEEEECCEEeecccCCCeeecCCCeEEEEEEE
Q 027210 92 NYKLALNITIRNPNKKIGVHYDRIEARVYYDDKRLTSVPLTPFYQGHKNTSYLNPVF 148 (226)
Q Consensus 92 ~~~l~~~l~~~NPN~~~~i~Y~~~~v~v~Y~g~~lg~~~vp~f~q~~~~~~~v~~~l 148 (226)
.-.+.+++.++|... .. -+...+.++.+|..++...++++. ++++..+...+
T Consensus 18 g~~~~i~~~V~N~G~-~~--~~~~~v~~~~~~~~~~~~~i~~L~--~g~~~~v~~~~ 69 (101)
T PF07705_consen 18 GEPVTITVTVKNNGT-AD--AENVTVRLYLDGNSVSTVTIPSLA--PGESETVTFTW 69 (101)
T ss_dssp TSEEEEEEEEEE-SS-S---BEEEEEEEEETTEEEEEEEESEB---TTEEEEEEEEE
T ss_pred CCEEEEEEEEEECCC-CC--CCCEEEEEEECCceeccEEECCcC--CCcEEEEEEEE
Confidence 345667778899765 22 345677888888888766664433 34444444433
No 87
>PHA02902 putative IMV membrane protein; Provisional
Probab=23.14 E-value=41 Score=22.57 Aligned_cols=20 Identities=15% Similarity=0.393 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHhheeeeeeC
Q 027210 48 VSAVLILGLAALIVWLIFRP 67 (226)
Q Consensus 48 l~l~~l~gi~~li~~lvlrP 67 (226)
+++++.+.|+.+++|.+||-
T Consensus 7 vi~~v~v~Ivclliya~YrR 26 (70)
T PHA02902 7 VILAVIVIIFCLLIYAAYKR 26 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44455556666666766654
No 88
>PRK11627 hypothetical protein; Provisional
Probab=22.42 E-value=2.8e+02 Score=22.66 Aligned_cols=33 Identities=9% Similarity=0.172 Sum_probs=16.5
Q ss_pred CCCeeecCCCeEEEEEEEEeceecchhHHHHHHhhhcCCeEEEE
Q 027210 131 LTPFYQGHKNTSYLNPVFEGQQILLGGALRDYNKENNAGVFSID 174 (226)
Q Consensus 131 vp~f~q~~~~~~~v~~~l~~~~v~l~~~~~~l~~d~~~G~v~~~ 174 (226)
..||..++.+...+.+.+ .+|..+...|.+..+
T Consensus 90 ~~G~~i~~~a~~~l~v~i-----------~~l~a~V~~g~~~~~ 122 (192)
T PRK11627 90 ARGYMIGPNGAVNLQIIV-----------NQLYADVSEGNVRYN 122 (192)
T ss_pred HCCcccCCCCCceEEEEH-----------HHhccccccceeeec
Confidence 456666665544443322 234445555655444
No 89
>KOG4101 consensus Cysteine-rich hydrophobic proteins [General function prediction only]
Probab=22.31 E-value=25 Score=27.51 Aligned_cols=7 Identities=57% Similarity=1.820 Sum_probs=3.4
Q ss_pred cccchhH
Q 027210 33 CGGCCCL 39 (226)
Q Consensus 33 c~~ccc~ 39 (226)
|-||||.
T Consensus 100 c~cCCCt 106 (175)
T KOG4101|consen 100 CLCCCCT 106 (175)
T ss_pred HHHHhhc
Confidence 3355553
No 90
>PF04790 Sarcoglycan_1: Sarcoglycan complex subunit protein; InterPro: IPR006875 The dystrophin glycoprotein complex (DGC) is a membrane-spanning complex that links the interior cytoskeleton to the extracellular matrix in muscle. The sarcoglycan complex is a subcomplex within the DGC and is composed of several muscle-specific, transmembrane proteins (alpha-, beta-, gamma-, delta- and zeta-sarcoglycan). The sarcoglycans are asparagine-linked glycosylated proteins with single transmembrane domains. This family contains beta, gamma and delta members [, ].; GO: 0007010 cytoskeleton organization, 0016012 sarcoglycan complex, 0016021 integral to membrane
Probab=22.09 E-value=84 Score=27.14 Aligned_cols=12 Identities=33% Similarity=0.645 Sum_probs=4.9
Q ss_pred HHHHHHHhheee
Q 027210 52 LILGLAALIVWL 63 (226)
Q Consensus 52 ~l~gi~~li~~l 63 (226)
++++=.++.+|+
T Consensus 24 l~iiNL~LTiwI 35 (264)
T PF04790_consen 24 LAIINLALTIWI 35 (264)
T ss_pred HHHHHHHHHhhh
Confidence 333334444453
No 91
>PF01621 Fusion_gly_K: Cell fusion glycoprotein K; InterPro: IPR002567 Human herpesvirus 1 (HHV-1) (Human herpes simplex virus 1) glycoprotein K (gK) plays an essential role in viral replication and cell fusion. gK is a very hydrophobic membrane protein that contains a signal sequence and several hydrophobic regions. gK contains three transmembrane domains (amino acids 125-139, 226-239, and 311-325) and another hydrophobic domain (amino acids 241-265), which is relatively less hydrophobic and much longer compared with the transmembrane sequences located in the extracellular loop. The domains may interact with each other to form a complex tertiary structure that is critical for the biological function of gK [].; GO: 0007155 cell adhesion, 0016020 membrane
Probab=21.41 E-value=1.7e+02 Score=26.28 Aligned_cols=6 Identities=50% Similarity=1.420 Sum_probs=2.4
Q ss_pred CCcccc
Q 027210 31 GGCGGC 36 (226)
Q Consensus 31 ~~c~~c 36 (226)
+=|.-|
T Consensus 294 ~vCt~C 299 (337)
T PF01621_consen 294 GVCTNC 299 (337)
T ss_pred HHHHHH
Confidence 334433
No 92
>PF03100 CcmE: CcmE; InterPro: IPR004329 CcmE is the product of one of a cluster of Ccm genes that are necessary for cytochrome c biosynthesis in eubacteria. Expression of these proteins is induced when the organisms are grown under anaerobic conditions with nitrate or nitrite as the final electron acceptor.; GO: 0017003 protein-heme linkage, 0017004 cytochrome complex assembly, 0005886 plasma membrane; PDB: 1SR3_A 2KCT_A 1J6Q_A 1LM0_A.
Probab=21.31 E-value=1.3e+02 Score=22.84 Aligned_cols=8 Identities=38% Similarity=0.505 Sum_probs=4.4
Q ss_pred EEEEEECC
Q 027210 116 EARVYYDD 123 (226)
Q Consensus 116 ~v~v~Y~g 123 (226)
++.|.|.|
T Consensus 83 ~i~V~Y~G 90 (131)
T PF03100_consen 83 EIPVVYTG 90 (131)
T ss_dssp EEEEEEES
T ss_pred EEEEEECC
Confidence 45555655
No 93
>PF09604 Potass_KdpF: F subunit of K+-transporting ATPase (Potass_KdpF); InterPro: IPR011726 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the F subunit (KdpF) of a P-type K+-translocating ATPase (Kdp). KdpF is a very small integral membrane peptide. The kdpABC operon of Escherichia coli codes for the high affinity K+-translocating Kdp complex []. KdpF is found upstream of the KdpA subunit (IPR004623 from INTERPRO). Because of its very small size and highly hydrophobic character, it is sometimes missed in genome annotation. More information about this protein can be found at Protein of the Month: ATP Synthases [].
Probab=21.13 E-value=57 Score=17.63 Aligned_cols=17 Identities=18% Similarity=0.610 Sum_probs=9.0
Q ss_pred HHHHHHHHhheeeeeeC
Q 027210 51 VLILGLAALIVWLIFRP 67 (226)
Q Consensus 51 ~~l~gi~~li~~lvlrP 67 (226)
++.+++.+-.+|-.++|
T Consensus 6 ~v~~~L~~YL~~aLl~P 22 (25)
T PF09604_consen 6 IVAVALFVYLFYALLRP 22 (25)
T ss_pred HHHHHHHHHHHHHHhCc
Confidence 34444444445555777
No 94
>PRK05886 yajC preprotein translocase subunit YajC; Validated
Probab=20.81 E-value=53 Score=24.46 Aligned_cols=8 Identities=13% Similarity=0.372 Sum_probs=5.1
Q ss_pred heeeeeeC
Q 027210 60 IVWLIFRP 67 (226)
Q Consensus 60 i~~lvlrP 67 (226)
+.|+.+||
T Consensus 17 ~yF~~iRP 24 (109)
T PRK05886 17 FMYFASRR 24 (109)
T ss_pred HHHHHccH
Confidence 33456888
No 95
>PTZ00046 rifin; Provisional
Probab=20.50 E-value=66 Score=29.07 Aligned_cols=19 Identities=32% Similarity=0.632 Sum_probs=13.1
Q ss_pred HHHHHHHHHHhheeeeeeC
Q 027210 49 SAVLILGLAALIVWLIFRP 67 (226)
Q Consensus 49 ~l~~l~gi~~li~~lvlrP 67 (226)
+.++++.++++|+||++|=
T Consensus 322 iAIvVIVLIMvIIYLILRY 340 (358)
T PTZ00046 322 VAIVVIVLIMVIIYLILRY 340 (358)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3455566778889998764
No 96
>PF11337 DUF3139: Protein of unknown function (DUF3139); InterPro: IPR021486 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=20.34 E-value=95 Score=21.63 Aligned_cols=11 Identities=9% Similarity=0.190 Sum_probs=5.5
Q ss_pred HHhheeeeeeC
Q 027210 57 AALIVWLIFRP 67 (226)
Q Consensus 57 ~~li~~lvlrP 67 (226)
++..+|....|
T Consensus 20 ~~~~~~~~~~~ 30 (85)
T PF11337_consen 20 IGIYYFFNGNP 30 (85)
T ss_pred HHHHHhhcCch
Confidence 33444445666
No 97
>PF10296 DUF2404: Putative integral membrane protein conserved region (DUF2404); InterPro: IPR019411 This is entry represents a domain of unknown function found in mitochondrial distribution and morphology proteins Mdm12 and Mdm34, and in maintenance of mitochondrial morphology protein Mmm1. These proteins are components of the ERMES/MDM complex, which serves as a molecular tether to connect the endoplasmic reticulum and mitochondria [].
Probab=20.30 E-value=2.3e+02 Score=19.79 Aligned_cols=46 Identities=24% Similarity=0.359 Sum_probs=26.1
Q ss_pred CccEEEEeeEEEeeEeecCC-CeeeEEEEEEEEEeCCCCeeEEEEceeEEEEEECC
Q 027210 69 NKVKFHVTDASLTEFNLTSN-NNLNYKLALNITIRNPNKKIGVHYDRIEARVYYDD 123 (226)
Q Consensus 69 ~~P~f~v~s~~v~~~~~~~~-~~l~~~l~~~l~~~NPN~~~~i~Y~~~~v~v~Y~g 123 (226)
+.|.|- +++.+..++++.. +.++ +. .+.--++++.+. .++++.|.|
T Consensus 33 ~~P~fl-~~i~v~~~~lG~~~P~i~-~~--~~~~~~~~g~~~-----~~~dv~Y~G 79 (91)
T PF10296_consen 33 KLPSFL-DEISVTELDLGDSPPIIS-NV--RIPDLDPDGELW-----IEFDVSYSG 79 (91)
T ss_pred cCCCcc-CcEEEEEEECCCCCCEEE-ec--cccccCCCCCEE-----EEEEEEEcC
Confidence 456775 9999999999863 3332 11 122123443222 347888877
Done!