Query 027210
Match_columns 226
No_of_seqs 143 out of 859
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 10:32:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027210.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027210hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1xo8_A AT1G01470; structural g 98.3 5.3E-07 1.8E-11 70.2 5.7 102 69-179 20-122 (151)
2 1yyc_A LEA protein, putative l 98.3 1.6E-06 5.6E-11 68.9 7.9 77 69-151 43-120 (174)
3 3but_A Uncharacterized protein 98.0 0.0001 3.4E-09 56.3 12.0 63 92-155 17-80 (136)
4 2knc_A Integrin alpha-IIB; tra 51.6 13 0.00045 23.2 2.9 27 41-67 13-41 (54)
5 2l8s_A Integrin alpha-1; trans 51.1 12 0.0004 23.4 2.6 26 42-67 11-38 (54)
6 2k1a_A Integrin alpha-IIB; sin 45.7 20 0.00067 21.1 2.9 22 42-63 12-33 (42)
7 4hw8_A Bacterial extracellular 45.4 4.4 0.00015 34.9 0.0 14 25-38 6-19 (420)
8 3j1r_A Archaeal adhesion filam 43.0 20 0.0007 18.6 2.3 15 48-62 10-24 (26)
9 2knc_B Integrin beta-3; transm 41.9 19 0.00064 24.2 2.8 23 40-63 11-33 (79)
10 2l0d_A Cell surface protein; s 35.8 1.2E+02 0.004 21.6 7.0 51 92-147 18-68 (114)
11 3s8f_C Cytochrome C oxidase po 35.8 16 0.00053 20.6 1.3 16 48-63 9-24 (34)
12 2k9j_B Integrin beta-3; transm 31.1 46 0.0016 19.5 2.9 17 46-62 15-31 (43)
13 2lk9_A Bone marrow stromal ant 30.0 37 0.0013 18.9 2.1 21 46-66 10-30 (35)
14 3vmt_A Monofunctional glycosyl 23.4 44 0.0015 27.7 2.5 12 8-19 16-27 (263)
15 1afo_A Glycophorin A; integral 21.7 38 0.0013 19.5 1.3 17 46-62 13-29 (40)
16 2l6w_A Beta-type platelet-deri 25.9 21 0.00073 20.6 0.0 9 64-73 30-38 (39)
No 1
>1xo8_A AT1G01470; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, unknown function; NMR {Arabidopsis thaliana} SCOP: b.1.25.1
Probab=98.35 E-value=5.3e-07 Score=70.24 Aligned_cols=102 Identities=16% Similarity=0.123 Sum_probs=77.0
Q ss_pred CccEEEEeeEEEeeEeecCCCeeeEEEEEEEEEeCCCCeeEEEEceeEEEEEECCEEeecccCC-CeeecCCCeEEEEEE
Q 027210 69 NKVKFHVTDASLTEFNLTSNNNLNYKLALNITIRNPNKKIGVHYDRIEARVYYDDKRLTSVPLT-PFYQGHKNTSYLNPV 147 (226)
Q Consensus 69 ~~P~f~v~s~~v~~~~~~~~~~l~~~l~~~l~~~NPN~~~~i~Y~~~~v~v~Y~g~~lg~~~vp-~f~q~~~~~~~v~~~ 147 (226)
+.|++++.++++.+++.. ..++.+.++++|||. ..+.+..++..+.-+|..++++..+ ++..++++++.+.+.
T Consensus 20 ~~P~v~v~~v~~~~~~~~-----~~~~~~~l~V~NPN~-~~lpi~gi~y~l~vng~~lasG~~~~~~~ipa~g~~~v~vp 93 (151)
T 1xo8_A 20 PKPEGSVTDVDLKDVNRD-----SVEYLAKVSVTNPYS-HSIPICEISFTFHSAGREIGKGKIPDPGSLKAKDMTALDIP 93 (151)
T ss_dssp CSCCCBCSEEEECCCTTT-----EECEEEEEEEECSSS-SCCCCEEEEEEEESSSSCEEEEEEEECCCCSSSSEEEEEEC
T ss_pred CCCEEEEEEeEEeccCcc-----eeEEEEEEEEECCCC-CCcccccEEEEEEECCEEEEEEecCCCcEECCCCcEEEEEE
Confidence 569999999998876543 568999999999998 9999999999999999999999886 588999999988876
Q ss_pred EEeceecchhHHHHHHhhhcCCeEEEEEEEEE
Q 027210 148 FEGQQILLGGALRDYNKENNAGVFSIDVKLKL 179 (226)
Q Consensus 148 l~~~~v~l~~~~~~l~~d~~~G~v~~~v~v~~ 179 (226)
++.....+.....++.. .+.++.+++++.
T Consensus 94 v~v~~~~l~~~~~~l~~---~~~i~Y~l~g~l 122 (151)
T 1xo8_A 94 VVVPYSILFNLARDVGV---DWDIDYELQIGL 122 (151)
T ss_dssp CCEEHHHHHHHHHHHHH---HSEEEEEEEEEE
T ss_pred EEEEHHHHHHHHHhccc---CCcccEEEEEEE
Confidence 65543222233333432 346666655444
No 2
>1yyc_A LEA protein, putative late embryogenesis abundant protein; structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana}
Probab=98.31 E-value=1.6e-06 Score=68.91 Aligned_cols=77 Identities=12% Similarity=0.108 Sum_probs=68.3
Q ss_pred CccEEEEeeEEEeeEeecCCCeeeEEEEEEEEEeCCCCeeEEEEceeEEEEEECCEEeecccCC-CeeecCCCeEEEEEE
Q 027210 69 NKVKFHVTDASLTEFNLTSNNNLNYKLALNITIRNPNKKIGVHYDRIEARVYYDDKRLTSVPLT-PFYQGHKNTSYLNPV 147 (226)
Q Consensus 69 ~~P~f~v~s~~v~~~~~~~~~~l~~~l~~~l~~~NPN~~~~i~Y~~~~v~v~Y~g~~lg~~~vp-~f~q~~~~~~~v~~~ 147 (226)
+.|++++.++++.+++.. ..++.+.++++|||. ..+.+..++..+.-+|..++++..+ ++..++++++.+.+.
T Consensus 43 ~~PeV~v~~v~~~~~~l~-----~~~~~l~LrV~NPN~-~pLpi~gi~Y~L~vnG~~lasG~s~~~~tIpa~g~~~v~Vp 116 (174)
T 1yyc_A 43 PTPEATVDDVDFKGVTRD-----GVDYHAKVSVKNPYS-QSIPICQISYILKSATRTIASGTIPDPGSLVGSGTTVLDVP 116 (174)
T ss_dssp CCCEEEEEEEEEEEECSS-----SEEEEEEEEEEECSS-SCCBCCSEEEEEEESSSCEEEEEESCCCBCCSSEEEEEEEE
T ss_pred CCCEEEEEEeEEeccccc-----eEEEEEEEEEECCCC-CCccccceEEEEEECCEEEEEEecCCCceECCCCcEEEEEE
Confidence 459999999999987665 478999999999998 9999999999999999999999887 488999999998887
Q ss_pred EEec
Q 027210 148 FEGQ 151 (226)
Q Consensus 148 l~~~ 151 (226)
+...
T Consensus 117 v~v~ 120 (174)
T 1yyc_A 117 VKVA 120 (174)
T ss_dssp EEES
T ss_pred EEEE
Confidence 7654
No 3
>3but_A Uncharacterized protein AF_0446; lipid binding protein, beta barrel, protein structure initia PSI-2; 1.91A {Archaeoglobus fulgidus dsm 4304}
Probab=98.01 E-value=0.0001 Score=56.26 Aligned_cols=63 Identities=8% Similarity=0.070 Sum_probs=55.8
Q ss_pred eEEEEEEEEEeCCCCeeEEEEceeEEEEEECCEEeeccc-CCCeeecCCCeEEEEEEEEeceecc
Q 027210 92 NYKLALNITIRNPNKKIGVHYDRIEARVYYDDKRLTSVP-LTPFYQGHKNTSYLNPVFEGQQILL 155 (226)
Q Consensus 92 ~~~l~~~l~~~NPN~~~~i~Y~~~~v~v~Y~g~~lg~~~-vp~f~q~~~~~~~v~~~l~~~~v~l 155 (226)
...+.+.++++|||. ..+.++.++..+...|..+|++. ...+..++.+++.+.+.+..+...+
T Consensus 17 ~t~~~~~l~V~NPN~-~~l~i~gl~y~v~lng~~la~G~s~~~~~I~~~g~~~v~v~~~i~~~~l 80 (136)
T 3but_A 17 QTEIVALAKVRNEDV-VPIVVSGYHYTIEMNGVKVADGYENSPVTVKPASATTLKFSLRLNNSFL 80 (136)
T ss_dssp EEEEEEEEEEECCSS-SCEEEEEEEEEEEETTEEEEEEEECCCEEECTTCEEEEEEEEEEEHHHH
T ss_pred EEEEEEEEEEeCCCC-cceeeeceEEEEEECCEEEEeeeecCceEECCCCcEEEEEEEEEchHHh
Confidence 577899999999998 99999999999999999999987 6789999999888888887765554
No 4
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=51.60 E-value=13 Score=23.18 Aligned_cols=27 Identities=19% Similarity=0.493 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHhheee--eeeC
Q 027210 41 TLLIKIIVSAVLILGLAALIVWL--IFRP 67 (226)
Q Consensus 41 ~~l~~~~l~l~~l~gi~~li~~l--vlrP 67 (226)
.++..++++-+++++++++++|- .|+-
T Consensus 13 wiIi~svl~GLllL~li~~~LwK~GFFkR 41 (54)
T 2knc_A 13 WWVLVGVLGGLLLLTILVLAMWKVGFFKR 41 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCcccC
Confidence 33445555667777788888884 3444
No 5
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=51.06 E-value=12 Score=23.41 Aligned_cols=26 Identities=23% Similarity=0.544 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHhheee--eeeC
Q 027210 42 LLIKIIVSAVLILGLAALIVWL--IFRP 67 (226)
Q Consensus 42 ~l~~~~l~l~~l~gi~~li~~l--vlrP 67 (226)
++..++++-+++++++++++|- .|+-
T Consensus 11 iIi~svl~GLLLL~Lii~~LwK~GFFKR 38 (54)
T 2l8s_A 11 VILLSAFAGLLLLMLLILALWKIGFFKR 38 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCcccC
Confidence 3345555567777888888884 3544
No 6
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=45.73 E-value=20 Score=21.12 Aligned_cols=22 Identities=18% Similarity=0.510 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHhheee
Q 027210 42 LLIKIIVSAVLILGLAALIVWL 63 (226)
Q Consensus 42 ~l~~~~l~l~~l~gi~~li~~l 63 (226)
++..++++-+++++++++++|-
T Consensus 12 iIi~s~l~GLllL~li~~~LwK 33 (42)
T 2k1a_A 12 WVLVGVLGGLLLLTILVLAMWK 33 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555566777777778773
No 7
>4hw8_A Bacterial extracellular solute-binding protein, P; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MAL; 2.25A {Staphylococcus aureus subsp} PDB: 4hs7_A*
Probab=45.44 E-value=4.4 Score=34.90 Aligned_cols=14 Identities=14% Similarity=0.019 Sum_probs=0.0
Q ss_pred CCCCCCCCcccchh
Q 027210 25 HRPGRGGGCGGCCC 38 (226)
Q Consensus 25 ~r~~~~~~c~~ccc 38 (226)
|.|||.-+||+|||
T Consensus 6 ~~~~~~~~~~~~~~ 19 (420)
T 4hw8_A 6 HHHHHENLYFQGCG 19 (420)
T ss_dssp --------------
T ss_pred cccccccceeeccC
Confidence 33345444555555
No 8
>3j1r_A Archaeal adhesion filament core; helical polymer, flagellar filament, cell adhesion, structur protein; 7.50A {Ignicoccus hospitalis}
Probab=42.96 E-value=20 Score=18.64 Aligned_cols=15 Identities=13% Similarity=0.408 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHhhee
Q 027210 48 VSAVLILGLAALIVW 62 (226)
Q Consensus 48 l~l~~l~gi~~li~~ 62 (226)
++++.+++.+.+-+|
T Consensus 10 LIviav~aaVllylW 24 (26)
T 3j1r_A 10 LILIAVAAAVLLYTW 24 (26)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 9
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=41.95 E-value=19 Score=24.19 Aligned_cols=23 Identities=39% Similarity=0.891 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhheee
Q 027210 40 FTLLIKIIVSAVLILGLAALIVWL 63 (226)
Q Consensus 40 ~~~l~~~~l~l~~l~gi~~li~~l 63 (226)
+.++ ..+++.++++|++++++|-
T Consensus 11 ~~Iv-~gvi~gilliGllllliwk 33 (79)
T 2knc_B 11 LVVL-LSVMGAILLIGLAALLIWK 33 (79)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred hhhH-HHHHHHHHHHHHHHHHHHH
Confidence 3443 3445567788888887774
No 10
>2l0d_A Cell surface protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Methanosarcina acetivorans}
Probab=35.78 E-value=1.2e+02 Score=21.60 Aligned_cols=51 Identities=16% Similarity=0.167 Sum_probs=32.5
Q ss_pred eEEEEEEEEEeCCCCeeEEEEceeEEEEEECCEEeecccCCCeeecCCCeEEEEEE
Q 027210 92 NYKLALNITIRNPNKKIGVHYDRIEARVYYDDKRLTSVPLTPFYQGHKNTSYLNPV 147 (226)
Q Consensus 92 ~~~l~~~l~~~NPN~~~~i~Y~~~~v~v~Y~g~~lg~~~vp~f~q~~~~~~~v~~~ 147 (226)
+-..++++.++|...... ....+.++-+|..++...+++.. ++.++.+...
T Consensus 18 ~~~~ti~atVkN~G~~~a---~~~~V~ly~~g~~v~t~~v~~La--aG~s~tv~~~ 68 (114)
T 2l0d_A 18 NTVNTMTATIENQGNKDS---TSFNVSLLVDGIVVDTQTVTSLE--SENSTNVDFH 68 (114)
T ss_dssp TSEEEEEEEEEECSSSCB---CCEEEEEEETTEEEEEEEESCBC--BTCEEEEEEE
T ss_pred CCeEEEEEEEEECCCCCC---CCEEEEEEECCEEEcceeccccc--CCCEEEEEEE
Confidence 334567778899876332 45778888899988887776633 3334444433
No 11
>3s8f_C Cytochrome C oxidase polypeptide 2A; complex IV, respiratory chain, lipid cubic phase, monoolein, peroxide, electron transport, proton pump; HET: HEM HAS OLC; 1.80A {Thermus thermophilus} PDB: 2qpd_C* 2qpe_C* 3bvd_C* 3qjq_C* 3qjr_C* 3qjs_C* 3qjt_C* 3qju_C* 3qjv_C* 1xme_C* 3s8g_C* 4esl_C* 4ev3_C* 4f05_C* 4fa7_C* 4faa_C* 1ehk_C* 3eh3_C* 3eh4_C* 3eh5_C* ...
Probab=35.77 E-value=16 Score=20.57 Aligned_cols=16 Identities=38% Similarity=0.943 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHhheee
Q 027210 48 VSAVLILGLAALIVWL 63 (226)
Q Consensus 48 l~l~~l~gi~~li~~l 63 (226)
++.++++|++++++|+
T Consensus 9 l~~V~ilg~~I~i~W~ 24 (34)
T 3s8f_C 9 LAVILVLTLTILVFWL 24 (34)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred ehHHHHHHHHHHHHHH
Confidence 3456677777777775
No 12
>2k9j_B Integrin beta-3; transmembrane complex, cell adhesion, cleavage on basic residues, disease mutation, glycoprotein, pyrrolidone carboxylic acid; NMR {Homo sapiens} PDB: 2rmz_A 2rn0_A 2l91_A
Probab=31.08 E-value=46 Score=19.52 Aligned_cols=17 Identities=47% Similarity=1.134 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHhhee
Q 027210 46 IIVSAVLILGLAALIVW 62 (226)
Q Consensus 46 ~~l~l~~l~gi~~li~~ 62 (226)
.+++.++++|++++++|
T Consensus 15 gvi~~ivliGl~lLliw 31 (43)
T 2k9j_B 15 SVMGAILLIGLAALLIW 31 (43)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34555777888888777
No 13
>2lk9_A Bone marrow stromal antigen 2; membrane, micelle, antiviral protein-immune system complex; NMR {Homo sapiens}
Probab=29.96 E-value=37 Score=18.93 Aligned_cols=21 Identities=14% Similarity=0.263 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHhheeeeee
Q 027210 46 IIVSAVLILGLAALIVWLIFR 66 (226)
Q Consensus 46 ~~l~l~~l~gi~~li~~lvlr 66 (226)
.++.+++++++.+..++++.+
T Consensus 10 Gvl~LLviV~LgV~LI~f~~k 30 (35)
T 2lk9_A 10 GILVLLIIVILGVPLIIFTIK 30 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHC--
T ss_pred cHHHHHHHHHhcchheEEeee
Confidence 334444444544444444433
No 14
>3vmt_A Monofunctional glycosyltransferase; transmembrane, bacterial cell WALL SYNT membrane; HET: LHI; 2.30A {Staphylococcus aureus} PDB: 3vmr_A* 3vms_A 3vmq_A*
Probab=23.43 E-value=44 Score=27.68 Aligned_cols=12 Identities=25% Similarity=0.382 Sum_probs=0.0
Q ss_pred CCCcccCCCCCC
Q 027210 8 LNGAYYGPAVPP 19 (226)
Q Consensus 8 ~~~~~~~~~~~~ 19 (226)
|.+.||-|-.-|
T Consensus 16 ~~~~~~~~~~~~ 27 (263)
T 3vmt_A 16 PRGSHMQPVGKP 27 (263)
T ss_dssp ------------
T ss_pred cCCCcccccCCc
Confidence 445688887543
No 15
>1afo_A Glycophorin A; integral membrane protein, transmembrane helix interactions, membrane protein folding; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 2kpf_A
Probab=21.72 E-value=38 Score=19.52 Aligned_cols=17 Identities=12% Similarity=0.255 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHhhee
Q 027210 46 IIVSAVLILGLAALIVW 62 (226)
Q Consensus 46 ~~l~l~~l~gi~~li~~ 62 (226)
+++++.+++|++..|+.
T Consensus 13 ~lII~~vmaGiIG~Ill 29 (40)
T 1afo_A 13 TLIIFGVMAGVIGTILL 29 (40)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34455566666555543
No 16
>2l6w_A Beta-type platelet-derived growth factor receptor; transmembrane helix, receptor tyrosine kinase, heptad repeat membrane protein; NMR {Homo sapiens}
Probab=25.87 E-value=21 Score=20.60 Aligned_cols=9 Identities=11% Similarity=0.471 Sum_probs=4.7
Q ss_pred eeeCCCccEE
Q 027210 64 IFRPINKVKF 73 (226)
Q Consensus 64 vlrP~~~P~f 73 (226)
+..- +.|++
T Consensus 30 ~~w~-qKPrY 38 (39)
T 2l6w_A 30 MLWQ-KKPRY 38 (39)
Confidence 3344 55665
Done!