BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027211
(226 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3TMP|A Chain A, The Catalytic Domain Of Human Deubiquitinase Duba In
Complex With Ubiquitin Aldehyde
pdb|3TMP|C Chain C, The Catalytic Domain Of Human Deubiquitinase Duba In
Complex With Ubiquitin Aldehyde
pdb|3TMP|E Chain E, The Catalytic Domain Of Human Deubiquitinase Duba In
Complex With Ubiquitin Aldehyde
pdb|3TMP|G Chain G, The Catalytic Domain Of Human Deubiquitinase Duba In
Complex With Ubiquitin Aldehyde
Length = 184
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 63/127 (49%), Gaps = 4/127 (3%)
Query: 86 GLAELQIEGDGNCQFRALADQLFRNPDYHKHVRKEIFKQLKHFRKLYEGYVPMNYKGYLR 145
G Q++ DG C FRA+ADQ++ + D H+ VRK L + YV ++ Y+
Sbjct: 45 GFIIKQMKEDGACLFRAVADQVYGDQDMHEVVRKHCMDYLMKNADYFSNYVTEDFTTYIN 104
Query: 146 KMKKSGEWGDHVTLQAAADRFQAKICLVTSFRDTCYVEIIPK----DKNPTRELWLSFWS 201
+ +K+ G+H+ +QA A+ + + + T VE I +N + +S+
Sbjct: 105 RKRKNNCHGNHIEMQAMAEMYNRPVEVYQYSTGTSAVEPINTFHGIHQNEDEPIRVSYHR 164
Query: 202 EVHYNSL 208
+HYNS+
Sbjct: 165 NIHYNSV 171
>pdb|3TMO|A Chain A, The Catalytic Domain Of Human Deubiquitinase Duba
Length = 184
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 61/127 (48%), Gaps = 4/127 (3%)
Query: 86 GLAELQIEGDGNCQFRALADQLFRNPDYHKHVRKEIFKQLKHFRKLYEGYVPMNYKGYLR 145
G Q + DG C FRA+ADQ++ + D H+ VRK L + YV ++ Y+
Sbjct: 45 GFIIKQXKEDGACLFRAVADQVYGDQDXHEVVRKHCXDYLXKNADYFSNYVTEDFTTYIN 104
Query: 146 KMKKSGEWGDHVTLQAAADRFQAKICLVTSFRDTCYVEIIPK----DKNPTRELWLSFWS 201
+ +K+ G+H+ QA A+ + + + T VE I +N + +S+
Sbjct: 105 RKRKNNCHGNHIEXQAXAEXYNRPVEVYQYSTGTSAVEPINTFHGIHQNEDEPIRVSYHR 164
Query: 202 EVHYNSL 208
+HYNS+
Sbjct: 165 NIHYNSV 171
>pdb|3PFY|A Chain A, The Catalytic Domain Of Human Otud5
Length = 185
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 61/125 (48%), Gaps = 5/125 (4%)
Query: 86 GLAELQIEGDGNCQFRALADQLFRNPDYHKHVRKEIFKQLKHFRKLYEGYVPMNYKGYLR 145
G Q + DG C FRA+ADQ++ + D H+ VRK L + YV ++ Y+
Sbjct: 58 GFIIKQXKEDGACLFRAVADQVYGDQDXHEVVRKHCXDYLXKNADYFSNYVTEDFTTYIN 117
Query: 146 KMKKSGEWGDHVTLQAAADRFQ--AKICLVTSFRDTCYVEIIPKDKNPTRELWLSFWSEV 203
+ +K+ G+H+ QA A+ + ++ ++ + I + P R +S+ +
Sbjct: 118 RKRKNNCHGNHIEXQAXAEXYNRPVEVYQYSTEPINTFHGIHQNEDEPIR---VSYHRNI 174
Query: 204 HYNSL 208
HYNS+
Sbjct: 175 HYNSV 179
>pdb|3ZNH|A Chain A, Crimean Congo Hemorrhagic Fever Virus Otu Domain In
Complex With Ubiquitin-propargyl
Length = 183
Score = 32.7 bits (73), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 42/86 (48%), Gaps = 10/86 (11%)
Query: 94 GDGNCQFRALADQLFRN-PDYHKHVRKEIFKQLKHFRKLYEG-----YVPMNYKGYLRKM 147
GDGNC + ++A+ N D+ H K + + RK Y+ V ++ + YL++M
Sbjct: 36 GDGNCFYHSIAELTMPNKTDHSYHYIKRLTESAA--RKYYQEEPEARLVGLSLEDYLKRM 93
Query: 148 KKSGEWGDHVTLQAAADRFQAKICLV 173
EWG TL+A+ + I ++
Sbjct: 94 LSDNEWGS--TLEASMLAKEMGITII 117
>pdb|3PHW|A Chain A, Otu Domain Of Crimean Congo Hemorrhagic Fever Virus In
Complex With Ubiquitin
pdb|3PHW|C Chain C, Otu Domain Of Crimean Congo Hemorrhagic Fever Virus In
Complex With Ubiquitin
pdb|3PHW|E Chain E, Otu Domain Of Crimean Congo Hemorrhagic Fever Virus In
Complex With Ubiquitin
pdb|3PHW|G Chain G, Otu Domain Of Crimean Congo Hemorrhagic Fever Virus In
Complex With Ubiquitin
pdb|3PHX|A Chain A, Otu Domain Of Crimean Congo Hemorrhagic Fever Virus In
Complex With Isg15
Length = 185
Score = 32.7 bits (73), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 42/86 (48%), Gaps = 10/86 (11%)
Query: 94 GDGNCQFRALADQLFRN-PDYHKHVRKEIFKQLKHFRKLYEG-----YVPMNYKGYLRKM 147
GDGNC + ++A+ N D+ H K + + RK Y+ V ++ + YL++M
Sbjct: 38 GDGNCFYHSIAELTMPNKTDHSYHYIKRLTESAA--RKYYQEEPEARLVGLSLEDYLKRM 95
Query: 148 KKSGEWGDHVTLQAAADRFQAKICLV 173
EWG TL+A+ + I ++
Sbjct: 96 LSDNEWGS--TLEASMLAKEMGITII 119
>pdb|3PRP|A Chain A, Structural Analysis Of A Viral Otu Domain Protease From
The Crimean- Congo Hemorrhagic Fever Virus In Complex
With Human Ubiquitin
pdb|3PRP|C Chain C, Structural Analysis Of A Viral Otu Domain Protease From
The Crimean- Congo Hemorrhagic Fever Virus In Complex
With Human Ubiquitin
Length = 178
Score = 32.7 bits (73), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 42/86 (48%), Gaps = 10/86 (11%)
Query: 94 GDGNCQFRALADQLFRN-PDYHKHVRKEIFKQLKHFRKLYEG-----YVPMNYKGYLRKM 147
GDGNC + ++A+ N D+ H K + + RK Y+ V ++ + YL++M
Sbjct: 36 GDGNCFYHSIAELTMPNKTDHSYHYIKRLTESAA--RKYYQEEPEARLVGLSLEDYLKRM 93
Query: 148 KKSGEWGDHVTLQAAADRFQAKICLV 173
EWG TL+A+ + I ++
Sbjct: 94 LSDNEWGS--TLEASMLAKEMGITII 117
>pdb|3PSE|A Chain A, Structure Of A Viral Otu Domain Protease Bound To
Interferon- Stimulated Gene 15 (Isg15)
Length = 171
Score = 32.7 bits (73), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 42/86 (48%), Gaps = 10/86 (11%)
Query: 94 GDGNCQFRALADQLFRN-PDYHKHVRKEIFKQLKHFRKLYEG-----YVPMNYKGYLRKM 147
GDGNC + ++A+ N D+ H K + + RK Y+ V ++ + YL++M
Sbjct: 38 GDGNCFYHSIAELTMPNKTDHSYHYIKRLTESAA--RKYYQEEPEARLVGLSLEDYLKRM 95
Query: 148 KKSGEWGDHVTLQAAADRFQAKICLV 173
EWG TL+A+ + I ++
Sbjct: 96 LSDNEWGS--TLEASMLAKEMGITII 119
>pdb|3PRM|A Chain A, Structural Analysis Of A Viral Otu Domain Protease From
The Crimean- Congo Hemorrhagic Fever Virus In Complex
With Human Ubiquitin
pdb|3PRM|C Chain C, Structural Analysis Of A Viral Otu Domain Protease From
The Crimean- Congo Hemorrhagic Fever Virus In Complex
With Human Ubiquitin
Length = 178
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 41/86 (47%), Gaps = 10/86 (11%)
Query: 94 GDGNCQFRALADQLFRN-PDYHKHVRKEIFKQLKHFRKLYEG-----YVPMNYKGYLRKM 147
GDGNC + ++A+ N D+ H K + + RK Y+ V ++ + YL++
Sbjct: 36 GDGNCFYHSIAELTXPNKTDHSYHYIKRLTESAA--RKYYQEEPEARLVGLSLEDYLKRX 93
Query: 148 KKSGEWGDHVTLQAAADRFQAKICLV 173
EWG TL+A+ + I ++
Sbjct: 94 LSDNEWGS--TLEASXLAKEXGITII 117
>pdb|3PT2|A Chain A, Structure Of A Viral Otu Domain Protease Bound To
Ubiquitin
Length = 187
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 41/86 (47%), Gaps = 10/86 (11%)
Query: 94 GDGNCQFRALADQLFRN-PDYHKHVRKEIFKQLKHFRKLYEG-----YVPMNYKGYLRKM 147
GDGNC + ++A+ N D+ H K + + RK Y+ V ++ + YL++
Sbjct: 39 GDGNCFYHSIAELTXPNKTDHSYHYIKRLTESAA--RKYYQEEPEARLVGLSLEDYLKRX 96
Query: 148 KKSGEWGDHVTLQAAADRFQAKICLV 173
EWG TL+A+ + I ++
Sbjct: 97 LSDNEWGS--TLEASXLAKEXGITII 120
>pdb|3PHU|A Chain A, Otu Domain Of Crimean Congo Hemorrhagic Fever Virus
pdb|3PHU|B Chain B, Otu Domain Of Crimean Congo Hemorrhagic Fever Virus
Length = 219
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 41/86 (47%), Gaps = 10/86 (11%)
Query: 94 GDGNCQFRALADQLFRN-PDYHKHVRKEIFKQLKHFRKLYEG-----YVPMNYKGYLRKM 147
GDGN + ++A+ N D+ H K + + RK Y+ V ++ + YL++M
Sbjct: 38 GDGNXFYHSIAELTMPNKTDHSYHYIKRLTESAA--RKYYQEEPEARLVGLSLEDYLKRM 95
Query: 148 KKSGEWGDHVTLQAAADRFQAKICLV 173
EWG TL+A+ + I ++
Sbjct: 96 LSDNEWGS--TLEASMLAKEMGITII 119
>pdb|4HXD|B Chain B, Diversity Of Ubiquitin And Isg15 Specificity Amongst
Nairoviruses Viral Ovarian Tumor Domain Proteases
pdb|4HXD|D Chain D, Diversity Of Ubiquitin And Isg15 Specificity Amongst
Nairoviruses Viral Ovarian Tumor Domain Proteases
Length = 174
Score = 28.9 bits (63), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 37/87 (42%), Gaps = 12/87 (13%)
Query: 94 GDGNCQFRALADQLF--RNPDYHKHVRKEIFKQLKHFRKLYEGYVP------MNYKGYLR 145
GDGNC + ++A+ F + P + V+ + L+ ++Y P ++ Y++
Sbjct: 35 GDGNCFYHSIAELFFDVKTPSSFRKVK----EHLQLAAEVYYDTEPEAVGTGISKDEYIK 90
Query: 146 KMKKSGEWGDHVTLQAAADRFQAKICL 172
K EWG + + Q I L
Sbjct: 91 VAMKDNEWGGSLEASMLSKHLQTTIIL 117
>pdb|3DKB|A Chain A, Crystal Structure Of A20, 2.5 Angstrom
pdb|3DKB|B Chain B, Crystal Structure Of A20, 2.5 Angstrom
pdb|3DKB|C Chain C, Crystal Structure Of A20, 2.5 Angstrom
pdb|3DKB|D Chain D, Crystal Structure Of A20, 2.5 Angstrom
pdb|3DKB|E Chain E, Crystal Structure Of A20, 2.5 Angstrom
pdb|3DKB|F Chain F, Crystal Structure Of A20, 2.5 Angstrom
Length = 390
Score = 28.5 bits (62), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 20/40 (50%)
Query: 87 LAELQIEGDGNCQFRALADQLFRNPDYHKHVRKEIFKQLK 126
L L+ GDGNC A + ++ D +RK +F LK
Sbjct: 112 LVALKTNGDGNCLMHATSQYMWGVQDTDLVLRKALFSTLK 151
>pdb|2VFJ|A Chain A, Structure Of The A20 Ovarian Tumour (Otu) Domain
pdb|2VFJ|B Chain B, Structure Of The A20 Ovarian Tumour (Otu) Domain
pdb|2VFJ|C Chain C, Structure Of The A20 Ovarian Tumour (Otu) Domain
pdb|2VFJ|D Chain D, Structure Of The A20 Ovarian Tumour (Otu) Domain
Length = 366
Score = 28.5 bits (62), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 20/40 (50%)
Query: 87 LAELQIEGDGNCQFRALADQLFRNPDYHKHVRKEIFKQLK 126
L L+ GDGNC A + ++ D +RK +F LK
Sbjct: 92 LVALKTNGDGNCLMHATSQYMWGVQDTDLVLRKALFSTLK 131
>pdb|2XG7|A Chain A, Crystal Structure Of Bst2-Tetherin Ectodomain Expressed
In Hek293t Cells
pdb|2XG7|C Chain C, Crystal Structure Of Bst2-Tetherin Ectodomain Expressed
In Hek293t Cells
Length = 103
Score = 27.7 bits (60), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 15/57 (26%)
Query: 26 DHTIASILASEENAKAEGQLGKRLSHLDSIPHTPRINGEIPDVN----DASFDHERL 78
+HT+ +++AS + KA+GQ K++ L+ GEI +N DAS + ERL
Sbjct: 42 NHTVMALMASLDAEKAQGQ--KKVEELE---------GEITTLNHKLQDASAEVERL 87
>pdb|3MQB|A Chain A, Crystal Structure Of Ectodomain Of Bst-2TETHERINCD317
(C2)
pdb|3MQB|B Chain B, Crystal Structure Of Ectodomain Of Bst-2TETHERINCD317
(C2)
pdb|3MQB|E Chain E, Crystal Structure Of Ectodomain Of Bst-2TETHERINCD317
(C2)
pdb|3MQB|F Chain F, Crystal Structure Of Ectodomain Of Bst-2TETHERINCD317
(C2)
Length = 121
Score = 27.3 bits (59), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 15/57 (26%)
Query: 26 DHTIASILASEENAKAEGQLGKRLSHLDSIPHTPRINGEIPDVN----DASFDHERL 78
+HT+ +++AS + KA+GQ K++ L+ GEI +N DAS + ERL
Sbjct: 52 NHTVMALMASLDAEKAQGQ--KKVEELE---------GEITTLNHKLQDASAEVERL 97
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,013,104
Number of Sequences: 62578
Number of extensions: 289602
Number of successful extensions: 625
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 613
Number of HSP's gapped (non-prelim): 26
length of query: 226
length of database: 14,973,337
effective HSP length: 95
effective length of query: 131
effective length of database: 9,028,427
effective search space: 1182723937
effective search space used: 1182723937
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)