Query 027211
Match_columns 226
No_of_seqs 226 out of 1091
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 06:37:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027211.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027211hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2605 OTU (ovarian tumor)-li 100.0 5.5E-29 1.2E-33 228.8 7.9 183 44-226 175-364 (371)
2 PF02338 OTU: OTU-like cystein 99.9 3.7E-27 8.1E-32 183.7 8.0 107 93-205 1-121 (121)
3 KOG2606 OTU (ovarian tumor)-li 99.9 3.1E-26 6.8E-31 202.4 11.7 140 70-212 142-299 (302)
4 KOG3288 OTU-like cysteine prot 99.7 1.2E-17 2.6E-22 145.5 7.5 127 87-216 110-238 (307)
5 PF10275 Peptidase_C65: Peptid 99.6 8.3E-15 1.8E-19 128.1 12.1 94 116-210 141-244 (244)
6 KOG3991 Uncharacterized conser 99.5 2.7E-14 5.9E-19 122.9 8.7 94 115-211 157-256 (256)
7 COG5539 Predicted cysteine pro 98.8 1.1E-09 2.5E-14 97.4 1.1 127 78-208 162-304 (306)
8 COG5539 Predicted cysteine pro 98.6 1.1E-08 2.3E-13 91.2 1.5 110 94-209 119-230 (306)
9 PF05415 Peptidase_C36: Beet n 91.6 0.44 9.5E-06 36.1 4.9 70 92-179 3-75 (104)
10 PF05412 Peptidase_C33: Equine 77.7 1.6 3.5E-05 34.0 1.9 84 92-212 4-87 (108)
11 PRK09784 hypothetical protein; 74.0 1.9 4.1E-05 38.7 1.6 25 81-105 194-218 (417)
12 KOG4345 NF-kappa B regulator A 59.6 14 0.0003 37.5 4.6 74 89-175 148-242 (774)
13 PF05381 Peptidase_C21: Tymovi 51.9 98 0.0021 24.1 7.2 90 95-207 2-94 (104)
14 COG5007 Predicted transcriptio 51.4 12 0.00027 27.6 2.1 56 74-129 2-61 (80)
15 KOG2605 OTU (ovarian tumor)-li 44.9 5.2 0.00011 37.7 -1.0 90 81-170 49-138 (371)
16 smart00718 DM4_12 DM4/DM12 fam 39.3 32 0.00069 25.9 2.8 73 73-157 8-81 (95)
17 TIGR02934 nifT_nitrog probable 37.0 8 0.00017 27.7 -0.8 33 127-159 7-41 (67)
18 cd05295 MDH_like Malate dehydr 30.5 37 0.0008 32.9 2.3 43 97-153 3-49 (452)
19 TIGR01078 arcA arginine deimin 29.1 66 0.0014 30.5 3.8 53 63-127 34-86 (405)
20 cd03346 eu_TrpOH Eukaryotic tr 26.6 35 0.00076 31.1 1.4 81 76-167 110-208 (287)
21 PRK01388 arginine deiminase; P 25.0 92 0.002 29.6 3.9 31 63-93 41-71 (406)
22 KOG0256 1-aminocyclopropane-1- 24.1 1E+02 0.0022 29.8 4.0 51 76-129 88-138 (471)
23 PHA03308 transcriptional regul 21.5 59 0.0013 33.7 1.9 17 90-106 1320-1336(1463)
24 PF01381 HTH_3: Helix-turn-hel 21.2 1.1E+02 0.0024 19.4 2.7 30 141-170 23-52 (55)
No 1
>KOG2605 consensus OTU (ovarian tumor)-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=5.5e-29 Score=228.76 Aligned_cols=183 Identities=34% Similarity=0.585 Sum_probs=169.1
Q ss_pred hhhhhcCCCCCCCCCCcccCCCCCCCchhhHHHHHHHHhhHCCcEEEEecCCCchhHHHHHHHHhcCCcchHHHHHHHHH
Q 027211 44 QLGKRLSHLDSIPHTPRINGEIPDVNDASFDHERLSERLTTYGLAELQIEGDGNCQFRALADQLFRNPDYHKHVRKEIFK 123 (226)
Q Consensus 44 ~~~~r~~~~~~~~~~p~~~~~~p~~~~~~~~~~~l~~~L~~~gL~~~~V~gDGNClFrAls~qL~~~~~~h~~vR~~vv~ 123 (226)
++|++++++.+++++|.+++.+|+..+...+++++.+++..+|+..++|.+||||+|||+|+|+|++.+.|..+|+++++
T Consensus 175 ~~g~~in~y~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~g~e~~Kv~edGsC~fra~aDQvy~d~e~~~~~~~~~~d 254 (371)
T KOG2605|consen 175 EVGVRINDYNPKVLVPFINGLPPSEEEPQSAHERSAKRKKHFGFEYKKVVEDGSCLFRALADQVYGDDEQHDHNRRECVD 254 (371)
T ss_pred hhcccccCCCccccccccccCCCchHHHHHHHHHHHHHHHHhhhhhhhcccCCchhhhccHHHhhcCHHHHHHHHHHHHH
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhhcccCCCcHHHHHHhhccCCCCCChHHHHHHHH--hhCCcEEEEEccCCceeEEEcCCCCCCCCeEEEEeCC
Q 027211 124 QLKHFRKLYEGYVPMNYKGYLRKMKKSGEWGDHVTLQAAAD--RFQAKICLVTSFRDTCYVEIIPKDKNPTRELWLSFWS 201 (226)
Q Consensus 124 ~l~~n~~~f~~fv~~~~~~Yl~~m~~~g~WGg~ieL~AlA~--~~~v~I~V~~~~~~~~~i~i~p~~~~~~~~I~L~y~~ 201 (226)
++..+++.|+.|++++|.+|+++|++++.||+|+|+||+|. -+..++.++++.++++++.+.|....+...+++.||.
T Consensus 255 q~~~e~~~~~~~vt~~~~~y~k~kr~~~~~gnhie~Qa~a~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~n~~~ 334 (371)
T KOG2605|consen 255 QLKKERDFYEDYVTEDFTSYIKRKRADGEPGNHIEQQAAADIYEEIEKPLNITSFKDTCYIQTPPAIEESVKMEKYNFWV 334 (371)
T ss_pred HHhhcccccccccccchhhcccccccCCCCcchHHHhhhhhhhhhccccceeecccccceeccCcccccchhhhhhcccc
Confidence 99999999999999999999999999999999999999998 6677778888888999999888777777789999999
Q ss_pred CCcceeeecC--CCCC---CCCccccccCC
Q 027211 202 EVHYNSLYAT--GDVP---TRKPRKKYWLF 226 (226)
Q Consensus 202 ~~HYdsl~~~--~~~p---~~~~~~~~~~~ 226 (226)
..||+.++.. .... ..++|+|+|++
T Consensus 335 ~~h~~~~~~~~~~~~s~~~~~~~~r~~~~~ 364 (371)
T KOG2605|consen 335 EVHYNTARHSGKSADSATLEEKTKRKSLRR 364 (371)
T ss_pred hhhhhhcccccccccccchhhccCCCchhh
Confidence 9999999985 3332 33788899875
No 2
>PF02338 OTU: OTU-like cysteine protease; InterPro: IPR003323 This is a group of proteins found primarily in viruses, eukaryotes and in the pathogenic bacterium Chlamydia pneumoniae. In viruses they are annotated as replicase or RNA-dependent RNA polymerase. The eukaryotic sequences are related to the Ovarian Tumour (OTU) gene in Drosophila, cezanne deubiquitinating peptidase and tumor necrosis factor, alpha-induced protein 3 (MEROPS peptidase family C64) and otubain 1 and otubain 2 (MEROPS peptidase family C65). None of these proteins has a known biochemical function but low sequence similarity with the polyprotein regions of arteriviruses, and conserved cysteine and histidine, and possibly the aspartate, residues suggests that those not yet recognised as peptidases could possess cysteine protease activity [].; PDB: 2VFJ_C 3DKB_F 3PHW_A 3PHU_B 3PHX_A 3BY4_A 3C0R_C 3PRM_C 3PRP_C 3ZRH_A ....
Probab=99.94 E-value=3.7e-27 Score=183.71 Aligned_cols=107 Identities=31% Similarity=0.598 Sum_probs=91.6
Q ss_pred cCCCchhHHHHHHHHh----cCCcchHHHHHHHHHHHH-hhhhhhcccCCCcHHHHHHhhccCCCCCChHHHHHHHHhhC
Q 027211 93 EGDGNCQFRALADQLF----RNPDYHKHVRKEIFKQLK-HFRKLYEGYVPMNYKGYLRKMKKSGEWGDHVTLQAAADRFQ 167 (226)
Q Consensus 93 ~gDGNClFrAls~qL~----~~~~~h~~vR~~vv~~l~-~n~~~f~~fv~~~~~~Yl~~m~~~g~WGg~ieL~AlA~~~~ 167 (226)
||||||||||||+|++ +++..|.+||++|++||+ .|++.|..|+..+ +|+++|+|||++||+|+|++|+
T Consensus 1 pgDGnClF~Avs~~l~~~~~~~~~~~~~lR~~~~~~l~~~~~~~~~~~~~~~------~~~~~~~Wg~~~el~a~a~~~~ 74 (121)
T PF02338_consen 1 PGDGNCLFRAVSDQLYGDGGGSEDNHQELRKAVVDYLRDKNRDKFEEFLEGD------KMSKPGTWGGEIELQALANVLN 74 (121)
T ss_dssp -SSTTHHHHHHHHHHCTT-SSSTTTHHHHHHHHHHHHHTHTTTHHHHHHHHH------HHTSTTSHEEHHHHHHHHHHHT
T ss_pred CCCccHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhccchhhhhhhhh------hhccccccCcHHHHHHHHHHhC
Confidence 7999999999999999 999999999999999999 9999999988644 8999999999999999999999
Q ss_pred CcEEEEEccCCc--eeEEEcC--CCCCCCCeEEEEeCC-----CCcc
Q 027211 168 AKICLVTSFRDT--CYVEIIP--KDKNPTRELWLSFWS-----EVHY 205 (226)
Q Consensus 168 v~I~V~~~~~~~--~~i~i~p--~~~~~~~~I~L~y~~-----~~HY 205 (226)
++|+||+..... .++.+.+ ......++|+|+|.. ++||
T Consensus 75 ~~I~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~l~~~~~Hy 121 (121)
T PF02338_consen 75 RPIIVYSSSDGDNVVFIKFTGKYPPLESPPPICLCYHGHLYYTGNHY 121 (121)
T ss_dssp SEEEEECETTTBEEEEEEESCEESTTTTTTSEEEEEETEEEEETTEE
T ss_pred CeEEEEEcCCCCccceeeecCccccCCCCCeEEEEEcCCccCCCCCC
Confidence 999999764433 3444433 123567899999998 8998
No 3
>KOG2606 consensus OTU (ovarian tumor)-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=3.1e-26 Score=202.43 Aligned_cols=140 Identities=21% Similarity=0.360 Sum_probs=121.9
Q ss_pred chhhHHHHHHHHhhHCCcEEEEecCCCchhHHHHHHHHhcC---CcchHHHHHHHHHHHHhhhhhhcccCC---------
Q 027211 70 DASFDHERLSERLTTYGLAELQIEGDGNCQFRALADQLFRN---PDYHKHVRKEIFKQLKHFRKLYEGYVP--------- 137 (226)
Q Consensus 70 ~~~~~~~~l~~~L~~~gL~~~~V~gDGNClFrAls~qL~~~---~~~h~~vR~~vv~~l~~n~~~f~~fv~--------- 137 (226)
...|+.+.|.+.|...||...+||.||+|+|+||++||--. .-....+|..+++||++|.++|.+|+.
T Consensus 142 ~k~~E~~k~~~il~~~~l~~~~Ip~DG~ClY~aI~hQL~~~~~~~~~v~kLR~~~a~Ymr~H~~df~pf~~~eet~d~~~ 221 (302)
T KOG2606|consen 142 AKSMEKEKLAQILEERGLKMFDIPADGHCLYAAISHQLKLRSGKLLSVQKLREETADYMREHVEDFLPFLLDEETGDSLG 221 (302)
T ss_pred hhhhHHHHHHHHHHhccCccccCCCCchhhHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHHhhhHhcCccccccCC
Confidence 34588899999999999999999999999999999998532 246789999999999999999999973
Q ss_pred -CcHHHHHHhhccCCCCCChHHHHHHHHhhCCcEEEEEccCCceeEEEcCCCCCCCCeEEEEeCC-----CCcceeeecC
Q 027211 138 -MNYKGYLRKMKKSGEWGDHVTLQAAADRFQAKICLVTSFRDTCYVEIIPKDKNPTRELWLSFWS-----EVHYNSLYAT 211 (226)
Q Consensus 138 -~~~~~Yl~~m~~~g~WGg~ieL~AlA~~~~v~I~V~~~~~~~~~i~i~p~~~~~~~~I~L~y~~-----~~HYdsl~~~ 211 (226)
.+|+.||+.|+.++.|||++||.|+|.+|++||.||..+ .+...+++.+.+ .++|.|+|+. |.||||+.+.
T Consensus 222 ~~~f~~Yc~eI~~t~~WGgelEL~AlShvL~~PI~Vy~~~--~p~~~~geey~k-d~pL~lvY~rH~y~LGeHYNS~~~~ 298 (302)
T KOG2606|consen 222 PEDFDKYCREIRNTAAWGGELELKALSHVLQVPIEVYQAD--GPILEYGEEYGK-DKPLILVYHRHAYGLGEHYNSVTPL 298 (302)
T ss_pred HHHHHHHHHHhhhhccccchHHHHHHHHhhccCeEEeecC--CCceeechhhCC-CCCeeeehHHhHHHHHhhhcccccc
Confidence 259999999999999999999999999999999999965 445667766544 6899999986 6899999775
Q ss_pred C
Q 027211 212 G 212 (226)
Q Consensus 212 ~ 212 (226)
.
T Consensus 299 ~ 299 (302)
T KOG2606|consen 299 K 299 (302)
T ss_pred c
Confidence 4
No 4
>KOG3288 consensus OTU-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=1.2e-17 Score=145.53 Aligned_cols=127 Identities=24% Similarity=0.399 Sum_probs=104.7
Q ss_pred cEEEEecCCCchhHHHHHHHHhcCCcc-hHHHHHHHHHHHHhhhhhhcc-cCCCcHHHHHHhhccCCCCCChHHHHHHHH
Q 027211 87 LAELQIEGDGNCQFRALADQLFRNPDY-HKHVRKEIFKQLKHFRKLYEG-YVPMNYKGYLRKMKKSGEWGDHVTLQAAAD 164 (226)
Q Consensus 87 L~~~~V~gDGNClFrAls~qL~~~~~~-h~~vR~~vv~~l~~n~~~f~~-fv~~~~~~Yl~~m~~~g~WGg~ieL~AlA~ 164 (226)
|.++.||.|..|||+||+.-+.+.-.. -.++|+.+.+...+||+.|.. +++..-.+||..+.++..|||.|||..+|+
T Consensus 110 l~~~vvp~DNSCLF~ai~yv~~k~~~~~~~elR~iiA~~Vasnp~~yn~AiLgK~n~eYc~WI~k~dsWGGaIElsILS~ 189 (307)
T KOG3288|consen 110 LSRRVVPDDNSCLFTAIAYVIFKQVSNRPYELREIIAQEVASNPDKYNDAILGKPNKEYCAWILKMDSWGGAIELSILSD 189 (307)
T ss_pred eEEEeccCCcchhhhhhhhhhcCccCCCcHHHHHHHHHHHhcChhhhhHHHhCCCcHHHHHHHccccccCceEEeeeehh
Confidence 567889999999999999999875433 368999999999999999976 456789999999999999999999999999
Q ss_pred hhCCcEEEEEccCCceeEEEcCCCCCCCCeEEEEeCCCCcceeeecCCCCCC
Q 027211 165 RFQAKICLVTSFRDTCYVEIIPKDKNPTRELWLSFWSEVHYNSLYATGDVPT 216 (226)
Q Consensus 165 ~~~v~I~V~~~~~~~~~i~i~p~~~~~~~~I~L~y~~~~HYdsl~~~~~~p~ 216 (226)
.|+|.|+|++-+ +..+.-+.++......++|.| +|.|||++.-...-|+
T Consensus 190 ~ygveI~vvDiq--t~rid~fged~~~~~rv~lly-dGIHYD~l~m~~~~~~ 238 (307)
T KOG3288|consen 190 YYGVEICVVDIQ--TVRIDRFGEDKNFDNRVLLLY-DGIHYDPLAMNEFKPT 238 (307)
T ss_pred hhceeEEEEecc--eeeehhcCCCCCCCceEEEEe-cccccChhhhccCCcc
Confidence 999999999853 334444444455566778888 7999999987664433
No 5
>PF10275 Peptidase_C65: Peptidase C65 Otubain; InterPro: IPR019400 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This family of proteins is a highly specific ubiquitin iso-peptidase that removes ubiquitin from proteins. The modification of cellular proteins by ubiquitin (Ub) is an important event that underlies protein stability and function in eukaryotes, as it is a dynamic and reversible process. Otubain carries several key conserved domains: (i) the OTU (ovarian tumour domain) in which there is an active cysteine protease triad (ii) a nuclear localisation signal, (iii) a Ub interaction motif (UIM)-like motif phi-xx-A-xxxs-xx-Ac (where phi indicates an aromatic amino acid, x indicates any amino acid and Ac indicates an acidic amino acid), (iv) a Ub-associated (UBA)-like domain and (v) the LxxLL motif. ; PDB: 4DDG_C 3VON_O 2ZFY_A 4DHZ_A 4DDI_C 1TFF_A 4DHJ_I 4DHI_B.
Probab=99.60 E-value=8.3e-15 Score=128.11 Aligned_cols=94 Identities=21% Similarity=0.294 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHhhhhhhcccCC----CcHHHHHH-hhccCCCCCChHHHHHHHHhhCCcEEEEEccCC---c--eeEEEc
Q 027211 116 HVRKEIFKQLKHFRKLYEGYVP----MNYKGYLR-KMKKSGEWGDHVTLQAAADRFQAKICLVTSFRD---T--CYVEII 185 (226)
Q Consensus 116 ~vR~~vv~~l~~n~~~f~~fv~----~~~~~Yl~-~m~~~g~WGg~ieL~AlA~~~~v~I~V~~~~~~---~--~~i~i~ 185 (226)
.+|..+..||+.|++.|.+|++ .++++||. .+...+.-+||+.+.|||++++++|.|+.-+++ . ....+.
T Consensus 141 flRLlts~~l~~~~d~y~~fi~~~~~~tve~~C~~~Vep~~~Ead~v~i~ALa~aL~v~i~v~yld~~~~~~~~~~~~~~ 220 (244)
T PF10275_consen 141 FLRLLTSAYLKSNSDEYEPFIDGLEYLTVEEFCSQEVEPMGKEADHVQIIALAQALGVPIRVEYLDRSVEGDEVNRHEFP 220 (244)
T ss_dssp HHHHHHHHHHHHTHHHHGGGSSTT--S-HHHHHHHHTSSTT--B-HHHHHHHHHHHT--EEEEESSSSGCSTTSEEEEES
T ss_pred HHHHHHHHHHHhhHHHHhhhhcccccCCHHHHHHhhcccccccchhHHHHHHHHHhCCeEEEEEecCCCCCCccccccCC
Confidence 5788899999999999999997 67999996 678888899999999999999999999986643 1 223333
Q ss_pred CCCCCCCCeEEEEeCCCCcceeeec
Q 027211 186 PKDKNPTRELWLSFWSEVHYNSLYA 210 (226)
Q Consensus 186 p~~~~~~~~I~L~y~~~~HYdsl~~ 210 (226)
|......+.|+|.| .++|||.+|+
T Consensus 221 ~~~~~~~~~i~LLy-rpgHYdIly~ 244 (244)
T PF10275_consen 221 PDNESQEPQITLLY-RPGHYDILYP 244 (244)
T ss_dssp -SSTTSS-SEEEEE-ETBEEEEEEE
T ss_pred CccCCCCCEEEEEE-cCCccccccC
Confidence 33335678999999 5669999986
No 6
>KOG3991 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.53 E-value=2.7e-14 Score=122.95 Aligned_cols=94 Identities=19% Similarity=0.305 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHHhhhhhhcccCC--CcHHHHHHh-hccCCCCCChHHHHHHHHhhCCcEEEEEccCCce-eE--EEcCCC
Q 027211 115 KHVRKEIFKQLKHFRKLYEGYVP--MNYKGYLRK-MKKSGEWGDHVTLQAAADRFQAKICLVTSFRDTC-YV--EIIPKD 188 (226)
Q Consensus 115 ~~vR~~vv~~l~~n~~~f~~fv~--~~~~~Yl~~-m~~~g~WGg~ieL~AlA~~~~v~I~V~~~~~~~~-~i--~i~p~~ 188 (226)
+.+|..+..+|++|++.|++||+ ++.++||.. +.-...-.|||+|-||++++++.|.|...++..+ .+ ..+|
T Consensus 157 ~ylRLvtS~~ik~~adfy~pFI~e~~tV~~fC~~eVEPm~kesdhi~I~ALs~Al~i~irVey~dr~~~~~~~hH~fp-- 234 (256)
T KOG3991|consen 157 MYLRLVTSGFIKSNADFYQPFIDEGMTVKAFCTQEVEPMYKESDHIHITALSQALGIRIRVEYVDRGSGDTVNHHDFP-- 234 (256)
T ss_pred HHHHHHHHHHHhhChhhhhccCCCCCcHHHHHHhhcchhhhccCceeHHHHHhhhCceEEEEEecCCCCCCCCCCcCc--
Confidence 46888899999999999999997 489999974 5555666899999999999999999998766432 11 2234
Q ss_pred CCCCCeEEEEeCCCCcceeeecC
Q 027211 189 KNPTRELWLSFWSEVHYNSLYAT 211 (226)
Q Consensus 189 ~~~~~~I~L~y~~~~HYdsl~~~ 211 (226)
....+.|+|.| ..+|||.||+.
T Consensus 235 e~s~P~I~LLY-rpGHYdilY~~ 256 (256)
T KOG3991|consen 235 EASAPEIYLLY-RPGHYDILYKK 256 (256)
T ss_pred cccCceEEEEe-cCCccccccCC
Confidence 35678999999 68899999863
No 7
>COG5539 Predicted cysteine protease (OTU family) [Posttranslational modification, protein turnover, chaperones]
Probab=98.81 E-value=1.1e-09 Score=97.36 Aligned_cols=127 Identities=13% Similarity=0.097 Sum_probs=90.4
Q ss_pred HHHHhhHCCcEEEEecCCCchhHHHHHHHHhcC-----CcchHHHHHHHHHHHHhhhhhhcccCC-------CcHHHHHH
Q 027211 78 LSERLTTYGLAELQIEGDGNCQFRALADQLFRN-----PDYHKHVRKEIFKQLKHFRKLYEGYVP-------MNYKGYLR 145 (226)
Q Consensus 78 l~~~L~~~gL~~~~V~gDGNClFrAls~qL~~~-----~~~h~~vR~~vv~~l~~n~~~f~~fv~-------~~~~~Yl~ 145 (226)
++..+..-++.-.++.|||+|+|-+||+||.-. -+.-...|-.-..|...+...|.++.- ..|++|++
T Consensus 162 ~~~i~y~~~i~k~d~~~dG~ieia~iS~~l~v~i~~Vdv~~~~~dr~~~~~~~q~~~i~f~g~hfD~~t~~m~~~dt~~n 241 (306)
T COG5539 162 IDVIAYATWIVKPDSQGDGCIEIAIISDQLPVRIHVVDVDKDSEDRYNSHPYVQRISILFTGIHFDEETLAMVLWDTYVN 241 (306)
T ss_pred cchHHHHHhhhccccCCCceEEEeEeccccceeeeeeecchhHHhhccCChhhhhhhhhhcccccchhhhhcchHHHHHh
Confidence 444556667777889999999999999998421 122355555555666666677776642 27999999
Q ss_pred hhccCCCCCChHHHHHHHHhhCCcEEEEEccCCceeEEEcCCCCCCCCeEEEEeCC----CCcceee
Q 027211 146 KMKKSGEWGDHVTLQAAADRFQAKICLVTSFRDTCYVEIIPKDKNPTRELWLSFWS----EVHYNSL 208 (226)
Q Consensus 146 ~m~~~g~WGg~ieL~AlA~~~~v~I~V~~~~~~~~~i~i~p~~~~~~~~I~L~y~~----~~HYdsl 208 (226)
.|..+..||+.+|+++||..|++|+.++...+ +.+...+...+. +..+.|.. -+|||++
T Consensus 242 e~~~~a~~g~~~ei~qLas~lk~~~~~~nT~~--~~ik~n~c~~~~--~~e~~~~~Ha~a~GH~n~~ 304 (306)
T COG5539 242 EVLFDASDGITIEIQQLASLLKNPHYYTNTAS--PSIKCNICGTGF--VGEKDYYAHALATGHYNFG 304 (306)
T ss_pred hhcccccccchHHHHHHHHHhcCceEEeecCC--ceEEeecccccc--chhhHHHHHHHhhcCcccc
Confidence 99999999999999999999999999997543 456665543222 23333332 3599986
No 8
>COG5539 Predicted cysteine protease (OTU family) [Posttranslational modification, protein turnover, chaperones]
Probab=98.62 E-value=1.1e-08 Score=91.22 Aligned_cols=110 Identities=15% Similarity=0.185 Sum_probs=90.1
Q ss_pred CCCchhHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhhcccCCC-cHHHHHHhhccCCCCC-ChHHHHHHHHhhCCcEE
Q 027211 94 GDGNCQFRALADQLFRNPDYHKHVRKEIFKQLKHFRKLYEGYVPM-NYKGYLRKMKKSGEWG-DHVTLQAAADRFQAKIC 171 (226)
Q Consensus 94 gDGNClFrAls~qL~~~~~~h~~vR~~vv~~l~~n~~~f~~fv~~-~~~~Yl~~m~~~g~WG-g~ieL~AlA~~~~v~I~ 171 (226)
.|..|+|+|.+..++.- .-..+|..+...+.+||+.|...+.+ +--.|+.++.+...|| |++|+.++++.|++.|+
T Consensus 119 ~d~srl~q~~~~~l~~a--sv~~lrE~vs~Ev~snPDl~n~~i~~~~~i~y~~~i~k~d~~~dG~ieia~iS~~l~v~i~ 196 (306)
T COG5539 119 DDNSRLFQAERYSLRDA--SVAKLREVVSLEVLSNPDLYNPAILEIDVIAYATWIVKPDSQGDGCIEIAIISDQLPVRIH 196 (306)
T ss_pred CchHHHHHHHHhhhhhh--hHHHHHHHHHHHHhhCccccchhhcCcchHHHHHhhhccccCCCceEEEeEeccccceeee
Confidence 57999999999998763 57899999999999999999998864 8899999999999999 99999999999999999
Q ss_pred EEEccCCceeEEEcCCCCCCCCeEEEEeCCCCcceeee
Q 027211 172 LVTSFRDTCYVEIIPKDKNPTRELWLSFWSEVHYNSLY 209 (226)
Q Consensus 172 V~~~~~~~~~i~i~p~~~~~~~~I~L~y~~~~HYdsl~ 209 (226)
|+..+.+. ...+.+.. -.-.+.+.| .+.|||...
T Consensus 197 ~Vdv~~~~-~dr~~~~~--~~q~~~i~f-~g~hfD~~t 230 (306)
T COG5539 197 VVDVDKDS-EDRYNSHP--YVQRISILF-TGIHFDEET 230 (306)
T ss_pred eeecchhH-HhhccCCh--hhhhhhhhh-cccccchhh
Confidence 99865432 22234332 223456667 689999876
No 9
>PF05415 Peptidase_C36: Beet necrotic yellow vein furovirus-type papain-like endopeptidase; InterPro: IPR008746 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases correspond to MEROPS peptidase family C36 (clan CA). The type example is beet necrotic yellow vein furovirus-type papain-like endopeptidase (beet necrotic yellow vein virus), which is involved in processing the viral polyprotein.
Probab=91.56 E-value=0.44 Score=36.11 Aligned_cols=70 Identities=16% Similarity=0.204 Sum_probs=46.4
Q ss_pred ecCCCchhHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhhcccCCCcHHHHHHhhc--cCCCCCChHHHHHHHHhhCCc
Q 027211 92 IEGDGNCQFRALADQLFRNPDYHKHVRKEIFKQLKHFRKLYEGYVPMNYKGYLRKMK--KSGEWGDHVTLQAAADRFQAK 169 (226)
Q Consensus 92 V~gDGNClFrAls~qL~~~~~~h~~vR~~vv~~l~~n~~~f~~fv~~~~~~Yl~~m~--~~g~WGg~ieL~AlA~~~~v~ 169 (226)
+..|.|||.-|||.+|.-+-+ .| -.-|..|.. ..+.|+..++ ++.+|-|-+ .+|+.++|.
T Consensus 3 ~sR~NNCLVVAis~~L~~T~e---~l----~~~M~An~~--------~i~~y~~W~r~~~~STW~DC~---mFA~~LkVs 64 (104)
T PF05415_consen 3 ASRPNNCLVVAISECLGVTLE---KL----DNLMQANVS--------TIKKYHTWLRKKRPSTWDDCR---MFADALKVS 64 (104)
T ss_pred ccCCCCeEeehHHHHhcchHH---HH----HHHHHhhHH--------HHHHHHHHHhcCCCCcHHHHH---HHHHhheeE
Confidence 467999999999999966532 11 122333322 3677787654 567897764 589999999
Q ss_pred EEEE-EccCCc
Q 027211 170 ICLV-TSFRDT 179 (226)
Q Consensus 170 I~V~-~~~~~~ 179 (226)
|.|- .+...+
T Consensus 65 m~vkV~~~~~~ 75 (104)
T PF05415_consen 65 MQVKVLSDKPY 75 (104)
T ss_pred EEEEEcCCCCc
Confidence 9874 344333
No 10
>PF05412 Peptidase_C33: Equine arterivirus Nsp2-type cysteine proteinase; InterPro: IPR008743 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases corresponds to MEROPS peptidase family C33 (clan CA). The type example is equine arteritis virus Nsp2-type cysteine proteinase, which is involved in viral polyprotein processing [].; GO: 0016032 viral reproduction, 0019082 viral protein processing
Probab=77.75 E-value=1.6 Score=33.97 Aligned_cols=84 Identities=14% Similarity=0.266 Sum_probs=46.1
Q ss_pred ecCCCchhHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhhcccCCCcHHHHHHhhccCCCCCChHHHHHHHHhhCCcEE
Q 027211 92 IEGDGNCQFRALADQLFRNPDYHKHVRKEIFKQLKHFRKLYEGYVPMNYKGYLRKMKKSGEWGDHVTLQAAADRFQAKIC 171 (226)
Q Consensus 92 V~gDGNClFrAls~qL~~~~~~h~~vR~~vv~~l~~n~~~f~~fv~~~~~~Yl~~m~~~g~WGg~ieL~AlA~~~~v~I~ 171 (226)
-|+||+|.+|+||..+.+ |.. ..|.. .|-+.-+.+..|.++-.|.-+=..++.|+.
T Consensus 4 PP~DG~CG~H~i~aI~n~---------------m~~--~~~t~-------~l~~~~r~~d~W~~dedl~~~iq~l~lPat 59 (108)
T PF05412_consen 4 PPGDGSCGWHCIAAIMNH---------------MMG--GEFTT-------PLPQRNRPSDDWADDEDLYQVIQSLRLPAT 59 (108)
T ss_pred CCCCCchHHHHHHHHHHH---------------hhc--cCCCc-------cccccCCChHHccChHHHHHHHHHccCcee
Confidence 489999999999976543 221 00111 011122344568888776666666677755
Q ss_pred EEEccCCceeEEEcCCCCCCCCeEEEEeCCCCcceeeecCC
Q 027211 172 LVTSFRDTCYVEIIPKDKNPTRELWLSFWSEVHYNSLYATG 212 (226)
Q Consensus 172 V~~~~~~~~~i~i~p~~~~~~~~I~L~y~~~~HYdsl~~~~ 212 (226)
+.-. .......|+.-..+.|+..-+..+
T Consensus 60 ~~~~-------------~~Cp~ArYv~~l~~qHW~V~~~~g 87 (108)
T PF05412_consen 60 LDRN-------------GACPHARYVLKLDGQHWEVSVRKG 87 (108)
T ss_pred ccCC-------------CCCCCCEEEEEecCceEEEEEcCC
Confidence 5321 111123344444677887666655
No 11
>PRK09784 hypothetical protein; Provisional
Probab=73.98 E-value=1.9 Score=38.72 Aligned_cols=25 Identities=40% Similarity=0.682 Sum_probs=22.0
Q ss_pred HhhHCCcEEEEecCCCchhHHHHHH
Q 027211 81 RLTTYGLAELQIEGDGNCQFRALAD 105 (226)
Q Consensus 81 ~L~~~gL~~~~V~gDGNClFrAls~ 105 (226)
.=+.+||+--+|.|||-|+.|||--
T Consensus 194 ~n~~~glkyapvdgdgycllrailv 218 (417)
T PRK09784 194 INKTYGLKYAPVDGDGYCLLRAILV 218 (417)
T ss_pred hhhhhCceecccCCCchhHHHHHHH
Confidence 3468999999999999999999854
No 12
>KOG4345 consensus NF-kappa B regulator AP20/Cezanne [Signal transduction mechanisms]
Probab=59.59 E-value=14 Score=37.47 Aligned_cols=74 Identities=22% Similarity=0.417 Sum_probs=43.1
Q ss_pred EEEecCCCchhHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhhcccCCCcHHHHHH------hhccCCCCC--------
Q 027211 89 ELQIEGDGNCQFRALADQLFRNPDYHKHVRKEIFKQLKHFRKLYEGYVPMNYKGYLR------KMKKSGEWG-------- 154 (226)
Q Consensus 89 ~~~V~gDGNClFrAls~qL~~~~~~h~~vR~~vv~~l~~n~~~f~~fv~~~~~~Yl~------~m~~~g~WG-------- 154 (226)
...-.+||||+ .++-.+ ..+|+.+--.|....+.|.. .|++-+. +|.+.+.-|
T Consensus 148 ~~~dt~~~N~l-------~w~~h~--lvlqk~l~t~l~~~~~rw~~----eW~~lik~ass~pr~~r~~~~~~~~~~e~s 214 (774)
T KOG4345|consen 148 PLADTGDGNCL-------MWGFHD--LVLQKALYTGLCYGTERWND----EWTELIKLASSEPRMHRSGNGGTGGGVEIS 214 (774)
T ss_pred cccccCCccch-------hhhhhh--HHHHHHHHHhhchhhHHHHH----HHHHHHHhhcccchhhhcccCCCCCCcccc
Confidence 34567899999 222111 66777777666665555322 3333222 343333221
Q ss_pred -------ChHHHHHHHHhhCCcEEEEEc
Q 027211 155 -------DHVTLQAAADRFQAKICLVTS 175 (226)
Q Consensus 155 -------g~ieL~AlA~~~~v~I~V~~~ 175 (226)
.++.+..+++++++||+|+..
T Consensus 215 ~~~yesLEe~hifvl~~ilRrpivvvsd 242 (774)
T KOG4345|consen 215 EDPYESLEEFHIFVLAHILRRPIVVVSD 242 (774)
T ss_pred cccchhHHHHHHHHHHHHhhCCeeEecc
Confidence 124477889999999999973
No 13
>PF05381 Peptidase_C21: Tymovirus endopeptidase; InterPro: IPR008043 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This entry is found in cysteine peptidases belong to the MEROPS peptidase family C21 (tymovirus endopeptidase family, clan CA). The type example is tymovirus endopeptidase (turnip yellow mosaic virus). The noncapsid protein expressed from ORF-206 of turnip yellow mosaic virus (TYMV) is autocatalytically processed by a papain-like protease, producing N-terminal 150kDa and C-terminal 70kDa proteins.; GO: 0003968 RNA-directed RNA polymerase activity, 0016032 viral reproduction
Probab=51.94 E-value=98 Score=24.05 Aligned_cols=90 Identities=12% Similarity=0.135 Sum_probs=53.9
Q ss_pred CCchhHHHHHHHHhcCCc-chHHHHHHHHHHHHhhhhhhcccCCCcHHHHHHhhccCCCCCChHHHHHHHHhhCCcEEEE
Q 027211 95 DGNCQFRALADQLFRNPD-YHKHVRKEIFKQLKHFRKLYEGYVPMNYKGYLRKMKKSGEWGDHVTLQAAADRFQAKICLV 173 (226)
Q Consensus 95 DGNClFrAls~qL~~~~~-~h~~vR~~vv~~l~~n~~~f~~fv~~~~~~Yl~~m~~~g~WGg~ieL~AlA~~~~v~I~V~ 173 (226)
.-+||--|||.|..-.++ -|..+-..+=+=+..|++ +++-|- .--.+.|+|-.|+....|.
T Consensus 2 ~~~CLL~A~s~at~~~~~~LW~~L~~~lPDSlL~n~e----------------i~~~GL--STDhltaLa~~~~~~~~~h 63 (104)
T PF05381_consen 2 ALDCLLVAISQATSISPETLWATLCEILPDSLLDNPE----------------IRTLGL--STDHLTALAYRYHFQCTFH 63 (104)
T ss_pred CcceeHHhhhhhhCCCHHHHHHHHHHhCchhhcCchh----------------hhhcCC--cHHHHHHHHHHHheEEEEE
Confidence 358999999999855432 233332222222222222 122221 2345678999999999898
Q ss_pred EccCCceeEEEcCCCCCCCCeEEEEeCCC--Cccee
Q 027211 174 TSFRDTCYVEIIPKDKNPTRELWLSFWSE--VHYNS 207 (226)
Q Consensus 174 ~~~~~~~~i~i~p~~~~~~~~I~L~y~~~--~HYds 207 (226)
+.. ..+.++.. .....+.|.|..| .||..
T Consensus 64 s~~---~~~~~Gi~--~as~~~~I~ht~G~p~HFs~ 94 (104)
T PF05381_consen 64 SDH---GVLHYGIK--DASTVFTITHTPGPPGHFSL 94 (104)
T ss_pred cCC---ceEEeecC--CCceEEEEEeCCCCCCcccc
Confidence 743 34666664 3556778877665 79998
No 14
>COG5007 Predicted transcriptional regulator, BolA superfamily [Transcription]
Probab=51.42 E-value=12 Score=27.58 Aligned_cols=56 Identities=20% Similarity=0.322 Sum_probs=36.1
Q ss_pred HHHHHHHHhhH-CCcEEEEecCCCchhHH-HHHHHHhcCC--cchHHHHHHHHHHHHhhh
Q 027211 74 DHERLSERLTT-YGLAELQIEGDGNCQFR-ALADQLFRNP--DYHKHVRKEIFKQLKHFR 129 (226)
Q Consensus 74 ~~~~l~~~L~~-~gL~~~~V~gDGNClFr-Als~qL~~~~--~~h~~vR~~vv~~l~~n~ 129 (226)
+.+.+.+.|.. +.+...+|.|||+=+|- +|++.+-|-. ..|+.|-.-+.+||..|.
T Consensus 2 ~~e~Ik~ll~~~L~~e~v~V~Gdg~Hf~vi~Vs~~F~g~srvkrqq~vYApL~~~i~~~~ 61 (80)
T COG5007 2 DNEEIKSLLENALPLEEVEVEGDGSHFQVIAVSEEFAGKSRVKRQQLVYAPLMAYIADNE 61 (80)
T ss_pred CHHHHHHHHHhcCCccEEEEecCCceEEEEEehHhhcCccHHHHHHHHHHHHHHHhhcCc
Confidence 44556666653 57789999999987764 4455543321 246666677777777653
No 15
>KOG2605 consensus OTU (ovarian tumor)-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]
Probab=44.93 E-value=5.2 Score=37.67 Aligned_cols=90 Identities=10% Similarity=-0.096 Sum_probs=73.4
Q ss_pred HhhHCCcEEEEecCCCchhHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhhcccCCCcHHHHHHhhccCCCCCChHHHH
Q 027211 81 RLTTYGLAELQIEGDGNCQFRALADQLFRNPDYHKHVRKEIFKQLKHFRKLYEGYVPMNYKGYLRKMKKSGEWGDHVTLQ 160 (226)
Q Consensus 81 ~L~~~gL~~~~V~gDGNClFrAls~qL~~~~~~h~~vR~~vv~~l~~n~~~f~~fv~~~~~~Yl~~m~~~g~WGg~ieL~ 160 (226)
.+..++..+....-|++|.++...+.+...++.+..-+.++|-|...+.+.|..=-+.....|+..|...+.|-|.-.++
T Consensus 49 ~~~~~~~~r~~~v~~~~~~~~~~~d~~~~~e~~e~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 128 (371)
T KOG2605|consen 49 GTDGYNNKRYGEVDRDFMIARGHQDEVLTVEDAEMAAICQSVLFKVLYQERFKLPSDTPCNGENSPMCSFHSRRGNESFQ 128 (371)
T ss_pred eeccccCccccchhhhhhhhcccccccccccHHHHhhHHhhhhhhhhhhhcccCCCCCcccccCCCCCcccccccccccc
Confidence 35666777777888999999999999999999999999999999999999887743446777888899999998888888
Q ss_pred HHHHhhCCcE
Q 027211 161 AAADRFQAKI 170 (226)
Q Consensus 161 AlA~~~~v~I 170 (226)
|++.--...+
T Consensus 129 a~s~~~~~~~ 138 (371)
T KOG2605|consen 129 AASFGGLEID 138 (371)
T ss_pred cccccccccc
Confidence 7776544433
No 16
>smart00718 DM4_12 DM4/DM12 family of domains in Drosophila melanogaster proteins of unknown function.
Probab=39.29 E-value=32 Score=25.90 Aligned_cols=73 Identities=21% Similarity=0.329 Sum_probs=43.0
Q ss_pred hHHHHHHHHhhHCCcEEEEecCCC-chhHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhhcccCCCcHHHHHHhhccCC
Q 027211 73 FDHERLSERLTTYGLAELQIEGDG-NCQFRALADQLFRNPDYHKHVRKEIFKQLKHFRKLYEGYVPMNYKGYLRKMKKSG 151 (226)
Q Consensus 73 ~~~~~l~~~L~~~gL~~~~V~gDG-NClFrAls~qL~~~~~~h~~vR~~vv~~l~~n~~~f~~fv~~~~~~Yl~~m~~~g 151 (226)
.=.+.|.+.|..+|+ || .|+-|||=+.--. ...|.-+=..++..|.+-++.-+. .--.+|...+ +.|
T Consensus 8 ~lY~~lE~~l~~~G~-------~g~~ClLR~ICE~a~~-~~~~~Gll~ell~ilftps~~~~~---~~~~~Y~~A~-~~G 75 (95)
T smart00718 8 LLYEALENLLDQLGF-------NGRACLLRAICESAQK-LDDHRGLLGELLRIVLTPPDELEE---VLDPDYREAY-RAG 75 (95)
T ss_pred HHHHHHHHHHHHcCC-------CchhhHHHHHHHcccc-cccccchHHHHHHHhhcCCcchhh---hchHHHHHHH-HcC
Confidence 335778899999996 77 9999999765432 233333555666666654411111 1235565554 345
Q ss_pred CCCChH
Q 027211 152 EWGDHV 157 (226)
Q Consensus 152 ~WGg~i 157 (226)
.-|++.
T Consensus 76 ~~g~dC 81 (95)
T smart00718 76 RAGGDC 81 (95)
T ss_pred CCCCCH
Confidence 446664
No 17
>TIGR02934 nifT_nitrog probable nitrogen fixation protein FixT. This largely uncharacterized protein family is assigned a role in nitrogen fixation by two criteria. First, its gene occurs, generally, among genes essential for expression of active nitrogenase. Second, its phylogenetic profile closely matches that of nitrogen-fixing bacteria. However, mutational studies in Klebsiella pneumoniae failed to demonstrate any phenotype for deletion or overexpression of the protein.
Probab=36.97 E-value=8 Score=27.71 Aligned_cols=33 Identities=30% Similarity=0.511 Sum_probs=24.3
Q ss_pred hhhhh-hcccCC-CcHHHHHHhhccCCCCCChHHH
Q 027211 127 HFRKL-YEGYVP-MNYKGYLRKMKKSGEWGDHVTL 159 (226)
Q Consensus 127 ~n~~~-f~~fv~-~~~~~Yl~~m~~~g~WGg~ieL 159 (226)
++.+- +..||+ .|.++=+-.+.+++.|||.+.|
T Consensus 7 ~~~~g~l~~YvpKKDLEE~Vv~~e~~~~WGG~v~L 41 (67)
T TIGR02934 7 RNRAGELSAYVPKKDLEEVIVSVEKEELWGGWVTL 41 (67)
T ss_pred eCCCCCEEEEEECCcchhheeeeecCccccCEEEE
Confidence 34443 667776 4788888889999999998654
No 18
>cd05295 MDH_like Malate dehydrogenase-like. These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=30.47 E-value=37 Score=32.85 Aligned_cols=43 Identities=19% Similarity=0.436 Sum_probs=30.7
Q ss_pred chhHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhhccc-C---CCcHHHHHHhhccCCCC
Q 027211 97 NCQFRALADQLFRNPDYHKHVRKEIFKQLKHFRKLYEGY-V---PMNYKGYLRKMKKSGEW 153 (226)
Q Consensus 97 NClFrAls~qL~~~~~~h~~vR~~vv~~l~~n~~~f~~f-v---~~~~~~Yl~~m~~~g~W 153 (226)
||-|.|=+. .+++||..|-..|.-. | |+.|++|++++.+..-|
T Consensus 3 ~cp~ya~~e--------------llad~l~~~l~~f~~~ki~~~p~~w~~wl~~~c~~~~w 49 (452)
T cd05295 3 DCPYYAKAE--------------LLADYLQKNLPDFRVHKIVKHPDEWEDWLQDLCKKNGW 49 (452)
T ss_pred CCchhHHHH--------------HHHHHHHhhCCCceEEEccCChHHHHHHHHHHHHhcCC
Confidence 677777665 5678899888777543 2 57899999888655544
No 19
>TIGR01078 arcA arginine deiminase. Arginine deiminase is the first enzyme of the arginine deiminase pathway of arginine degradation.
Probab=29.14 E-value=66 Score=30.50 Aligned_cols=53 Identities=25% Similarity=0.424 Sum_probs=38.2
Q ss_pred CCCCCCCchhhHHHHHHHHhhHCCcEEEEecCCCchhHHHHHHHHhcCCcchHHHHHHHHHHHHh
Q 027211 63 GEIPDVNDASFDHERLSERLTTYGLAELQIEGDGNCQFRALADQLFRNPDYHKHVRKEIFKQLKH 127 (226)
Q Consensus 63 ~~~p~~~~~~~~~~~l~~~L~~~gL~~~~V~gDGNClFrAls~qL~~~~~~h~~vR~~vv~~l~~ 127 (226)
.++|.++.|..+|+.+.+.|+..|.++..+.. -++..|. +..+|+.+++....
T Consensus 34 d~i~~~~~a~~EHd~f~~~Lr~~GveV~~l~d-------ll~e~l~-----~~~~r~~~l~~~~~ 86 (405)
T TIGR01078 34 DDIPWVEDAQKEHDQFANTLRDNGIEVLYLED-------LLAETLD-----LPEAKEKFIDEFLS 86 (405)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHCCCEEEEhHH-------HHHHHhC-----CHHHHHHHHHHHHh
Confidence 46888899999999999999999999887531 2333331 23677777666544
No 20
>cd03346 eu_TrpOH Eukaryotic tryptophan hydroxylase (TrpOH); a member of the biopterin-dependent aromatic amino acid hydroxylase family of non-heme, iron(II)-dependent enzymes that also includes prokaryotic and eukaryotic phenylalanine-4-hydroxylase (PheOH) and eukaryotic tyrosine hydroxylase (TyrOH). TrpOH oxidizes L-tryptophan to 5-hydroxy-L-tryptophan, the rate-limiting step in the biosynthesis of serotonin (5-hydroxytryptamine), a widely distributed hormone and neurotransmitter.
Probab=26.58 E-value=35 Score=31.07 Aligned_cols=81 Identities=15% Similarity=0.194 Sum_probs=53.9
Q ss_pred HHHHHHhhH-CCcEEEEecC--CCchhHHHHHHHHhcCCcchHHHHHHHHHHHHhh--------hhhhcccC---C----
Q 027211 76 ERLSERLTT-YGLAELQIEG--DGNCQFRALADQLFRNPDYHKHVRKEIFKQLKHF--------RKLYEGYV---P---- 137 (226)
Q Consensus 76 ~~l~~~L~~-~gL~~~~V~g--DGNClFrAls~qL~~~~~~h~~vR~~vv~~l~~n--------~~~f~~fv---~---- 137 (226)
+.+.+.|+. -|..++.|+| ...=+|..||.-.+.. ..|||.. ||.|-..+ +
T Consensus 110 ~dvn~~L~~~TGw~~~pV~Gli~~~~Ff~~LA~r~Fp~-----------t~~IR~~~~~~YtpEPDifHEl~GHvPlLad 178 (287)
T cd03346 110 EDVSRFLKERTGFTIRPVAGYLSPRDFLAGLAFRVFHC-----------TQYVRHSSDPFYTPEPDTCHELLGHVPLLAD 178 (287)
T ss_pred HHHHHHHHhccCCEEEecCCcCCHHHHHHHHhcCcccc-----------eeeecCccccCCCCCCchHHHHhccchhhcC
Confidence 346778987 5999999999 6777899999877653 2344443 33332222 2
Q ss_pred CcHHHHHHhhccCCCCCChHHHHHHHHhhC
Q 027211 138 MNYKGYLRKMKKSGEWGDHVTLQAAADRFQ 167 (226)
Q Consensus 138 ~~~~~Yl~~m~~~g~WGg~ieL~AlA~~~~ 167 (226)
-.|.+|......-+-=++.-++.-+|++|=
T Consensus 179 p~FA~f~q~~G~~~l~a~~~~i~~LarlYW 208 (287)
T cd03346 179 PSFAQFSQEIGLASLGASDEDIQKLATCYF 208 (287)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHhHhhh
Confidence 268888887654433346677888888873
No 21
>PRK01388 arginine deiminase; Provisional
Probab=24.98 E-value=92 Score=29.60 Aligned_cols=31 Identities=26% Similarity=0.476 Sum_probs=27.6
Q ss_pred CCCCCCCchhhHHHHHHHHhhHCCcEEEEec
Q 027211 63 GEIPDVNDASFDHERLSERLTTYGLAELQIE 93 (226)
Q Consensus 63 ~~~p~~~~~~~~~~~l~~~L~~~gL~~~~V~ 93 (226)
.++|.++.|..+|..+.+.|+..|.++..+.
T Consensus 41 ddi~~l~~aq~EHd~f~~~Lr~~GveV~~l~ 71 (406)
T PRK01388 41 DDVPWVERAQKEHDAFAQTLRDRGVEVLYLE 71 (406)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHCCCEEEEhH
Confidence 4688889999999999999999999988764
No 22
>KOG0256 consensus 1-aminocyclopropane-1-carboxylate synthase, and related proteins [Signal transduction mechanisms]
Probab=24.07 E-value=1e+02 Score=29.76 Aligned_cols=51 Identities=16% Similarity=0.241 Sum_probs=36.6
Q ss_pred HHHHHHhhHCCcEEEEecCCCchhHHHHHHHHhcCCcchHHHHHHHHHHHHhhh
Q 027211 76 ERLSERLTTYGLAELQIEGDGNCQFRALADQLFRNPDYHKHVRKEIFKQLKHFR 129 (226)
Q Consensus 76 ~~l~~~L~~~gL~~~~V~gDGNClFrAls~qL~~~~~~h~~vR~~vv~~l~~n~ 129 (226)
.-+..+|++ .-...-...||+|.|+.||. |.+-.-+..+|++++++|...+
T Consensus 88 DL~~~wl~k-~~~~~~~~~eg~~~f~~la~--fqdy~Gl~~frqa~A~Fm~~~r 138 (471)
T KOG0256|consen 88 DLIESWLSK-NPEASNCTREGQSSFDELAM--FQDYHGLPSFRQAVAEFMERAR 138 (471)
T ss_pred HHHHHHHHh-ChhhhhcccccccchhhHhh--cccccCchHHHHHHHHHHHHHh
Confidence 455667776 33444556799999999885 4444457899999999997653
No 23
>PHA03308 transcriptional regulator ICP4; Provisional
Probab=21.51 E-value=59 Score=33.71 Aligned_cols=17 Identities=35% Similarity=0.477 Sum_probs=11.8
Q ss_pred EEecCCCchhHHHHHHH
Q 027211 90 LQIEGDGNCQFRALADQ 106 (226)
Q Consensus 90 ~~V~gDGNClFrAls~q 106 (226)
+++.|--..-|||++.+
T Consensus 1320 ~D~v~Gtsasfravaaw 1336 (1463)
T PHA03308 1320 ADIVGGTSASFRAVAAW 1336 (1463)
T ss_pred hhhhcCcchhHHHHHHh
Confidence 44455556789999875
No 24
>PF01381 HTH_3: Helix-turn-helix; InterPro: IPR001387 This is large family of DNA binding helix-turn helix proteins that include a bacterial plasmid copy control protein, bacterial methylases, various bacteriophage transcription control proteins and a vegetative specific protein from Dictyostelium discoideum (Slime mould).; GO: 0043565 sequence-specific DNA binding; PDB: 2AXU_A 2AWI_D 2AXV_D 2AXZ_C 2AW6_A 3KXA_C 3BS3_A 2CRO_A 1ZUG_A 3CRO_R ....
Probab=21.21 E-value=1.1e+02 Score=19.45 Aligned_cols=30 Identities=10% Similarity=0.101 Sum_probs=22.0
Q ss_pred HHHHHhhccCCCCCChHHHHHHHHhhCCcE
Q 027211 141 KGYLRKMKKSGEWGDHVTLQAAADRFQAKI 170 (226)
Q Consensus 141 ~~Yl~~m~~~g~WGg~ieL~AlA~~~~v~I 170 (226)
..++.++.+....=+--.+.++|+.|++++
T Consensus 23 ~~~i~~~~~g~~~~~~~~~~~ia~~l~~~~ 52 (55)
T PF01381_consen 23 RSTISRIENGKRNPSLDTLKKIAKALGVSP 52 (55)
T ss_dssp HHHHHHHHTTSSTSBHHHHHHHHHHHTSEH
T ss_pred cchhHHHhcCCCCCCHHHHHHHHHHHCCCH
Confidence 345556656566677788999999999874
Done!