Your job contains 1 sequence.
>027212
MATHFSSTGPMRSIFQLKSNPPKCLLFLPDSCHRRAETATCRASSVSVRQWSSAANYSRL
VKLSNKPIVVRQLAHKRNGVVRCATIEEIEAEKSSIEKDVKARMERTIDMVRTNFNSVRT
GRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGM
TPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVVMLLLFTIS
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 027212
(226 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2077254 - symbol:RRF ""ribosome recycling fact... 597 4.0e-58 1
TIGR_CMR|CHY_1784 - symbol:CHY_1784 "ribosome recycling f... 316 2.4e-28 1
TIGR_CMR|BA_3962 - symbol:BA_3962 "ribosome recycling fac... 304 4.5e-27 1
TIGR_CMR|DET_0374 - symbol:DET_0374 "ribosome recycling f... 304 4.5e-27 1
TIGR_CMR|GSU_1918 - symbol:GSU_1918 "ribosome recycling f... 301 9.4e-27 1
UNIPROTKB|P0A805 - symbol:frr "ribosome recycling factor"... 297 2.5e-26 1
UNIPROTKB|P66734 - symbol:frr "Ribosome-recycling factor"... 292 8.4e-26 1
TIGR_CMR|CPS_1556 - symbol:CPS_1556 "ribosome recycling f... 291 1.1e-25 1
TIGR_CMR|SO_1632 - symbol:SO_1632 "ribosome recycling fac... 277 3.3e-24 1
TIGR_CMR|VC_2257 - symbol:VC_2257 "ribosome recycling fac... 271 1.4e-23 1
TIGR_CMR|CBU_1383 - symbol:CBU_1383 "ribosome recycling f... 250 2.4e-21 1
TIGR_CMR|SPO_1664 - symbol:SPO_1664 "ribosome recycling f... 245 8.0e-21 1
TIGR_CMR|CJE_0285 - symbol:CJE_0285 "ribosome recycling f... 241 2.1e-20 1
TIGR_CMR|ECH_0267 - symbol:ECH_0267 "ribosome recycling f... 216 9.5e-18 1
TAIR|locus:2082309 - symbol:AT3G01800 species:3702 "Arabi... 213 2.0e-17 1
TIGR_CMR|APH_0112 - symbol:APH_0112 "ribosome recycling f... 203 2.3e-16 1
TIGR_CMR|NSE_0945 - symbol:NSE_0945 "ribosome recycling f... 190 5.4e-15 1
DICTYBASE|DDB_G0268518 - symbol:DDB_G0268518 "Ribosome-re... 181 4.9e-14 1
UNIPROTKB|Q96E11 - symbol:MRRF "Ribosome-recycling factor... 146 7.2e-09 1
UNIPROTKB|F1SLQ7 - symbol:LOC100515005 "Uncharacterized p... 136 1.8e-07 1
UNIPROTKB|Q0VCQ4 - symbol:MRRF "Ribosome-recycling factor... 133 4.6e-07 1
UNIPROTKB|J9P265 - symbol:MRRF "Uncharacterized protein" ... 132 6.4e-07 1
MGI|MGI:1915121 - symbol:Mrrf "mitochondrial ribosome rec... 131 8.5e-07 1
RGD|1305897 - symbol:Mrrf "mitochondrial ribosome recycli... 126 3.8e-06 1
UNIPROTKB|Q4TT42 - symbol:MRRFP1 "Protein MRRFP1" species... 124 6.6e-06 1
UNIPROTKB|E1BQ58 - symbol:MRRF "Uncharacterized protein" ... 114 1.6e-05 2
ZFIN|ZDB-GENE-040704-12 - symbol:mrrf "mitochondrial ribo... 120 2.0e-05 1
SGD|S000001080 - symbol:RRF1 "Mitochondrial ribosome recy... 114 8.0e-05 1
FB|FBgn0035980 - symbol:CG4447 species:7227 "Drosophila m... 113 0.00014 1
>TAIR|locus:2077254 [details] [associations]
symbol:RRF ""ribosome recycling factor, chloroplast
precursor"" species:3702 "Arabidopsis thaliana" [GO:0006412
"translation" evidence=IEA;ISS] [GO:0009507 "chloroplast"
evidence=ISM;IDA] [GO:0009579 "thylakoid" evidence=IDA] [GO:0042742
"defense response to bacterium" evidence=IEP] [GO:0009570
"chloroplast stroma" evidence=IDA] [GO:0009817 "defense response to
fungus, incompatible interaction" evidence=IDA] [GO:0005507 "copper
ion binding" evidence=IDA] [GO:0009658 "chloroplast organization"
evidence=IMP] [GO:0009790 "embryo development" evidence=IMP]
[GO:0032544 "plastid translation" evidence=IMP] [GO:0006098
"pentose-phosphate shunt" evidence=RCA] [GO:0009073 "aromatic amino
acid family biosynthetic process" evidence=RCA] [GO:0010027
"thylakoid membrane organization" evidence=RCA] [GO:0016226
"iron-sulfur cluster assembly" evidence=RCA] [GO:0019288
"isopentenyl diphosphate biosynthetic process,
mevalonate-independent pathway" evidence=RCA] [GO:0019408 "dolichol
biosynthetic process" evidence=RCA] InterPro:IPR002661 Pfam:PF01765
GO:GO:0009570 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0042742
GO:GO:0005507 GO:GO:0009658 GO:GO:0009817 GO:GO:0009790
GO:GO:0009579 GO:GO:0032544 EMBL:AL138648 eggNOG:COG0233 KO:K02838
InterPro:IPR023584 SUPFAM:SSF55194 PANTHER:PTHR20982 EMBL:AF372883
EMBL:AY056778 EMBL:AY092982 EMBL:BT002678 IPI:IPI00545948
RefSeq:NP_567141.1 UniGene:At.19134 ProteinModelPortal:Q9M1X0
SMR:Q9M1X0 STRING:Q9M1X0 PaxDb:Q9M1X0 PRIDE:Q9M1X0 ProMEX:Q9M1X0
EnsemblPlants:AT3G63190.1 GeneID:825494 KEGG:ath:AT3G63190
TAIR:At3g63190 HOGENOM:HOG000040143 InParanoid:Q9M1X0 OMA:TREHRES
PhylomeDB:Q9M1X0 ProtClustDB:CLSN2917503 Genevestigator:Q9M1X0
GermOnline:AT3G63190 TIGRFAMs:TIGR00496 Uniprot:Q9M1X0
Length = 275
Score = 597 (215.2 bits), Expect = 4.0e-58, P = 4.0e-58
Identities = 130/220 (59%), Positives = 159/220 (72%)
Query: 1 MATHFSSTGPMRSIFQLKSNPPKCLLFLPDSCHRRAETATCRASSVSVRQWSS-AANYSR 59
MA FSST P + + ++N K LL LPDSC R +A ++ + + +
Sbjct: 1 MAASFSSTAPTTPVLRFRANYSKPLLSLPDSCLRIISSAISPSTRLIACSFKTDKLPLGA 60
Query: 60 LVKLSNKPIVVRQLAHKRNGVVRCATXXXXXXXXXXXXXDVKARMERTIDMVRTNFNSVR 119
V LS P+V R L KR V+R AT DVK++ME+TI+ +RT+FNS+R
Sbjct: 61 GVNLSGGPVVKRSL-QKRL-VIRSATIEEIEAEKSAIETDVKSKMEKTIETLRTSFNSIR 118
Query: 120 TGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLG 179
TGRSN AMLDKIEVEYYGSPVSLKSIAQI+TPD SSLL+QPYDKSSLK+IEKAIV+SDLG
Sbjct: 119 TGRSNAAMLDKIEVEYYGSPVSLKSIAQISTPDGSSLLLQPYDKSSLKAIEKAIVNSDLG 178
Query: 180 MTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVVM 219
+TPNNDG+VIRL+LP LTS+RRKELSKVVAKQ+EEGKV +
Sbjct: 179 VTPNNDGDVIRLSLPPLTSDRRKELSKVVAKQSEEGKVAL 218
>TIGR_CMR|CHY_1784 [details] [associations]
symbol:CHY_1784 "ribosome recycling factor" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0006412
"translation" evidence=ISS] [GO:0008135 "translation factor
activity, nucleic acid binding" evidence=ISS] HAMAP:MF_00040
InterPro:IPR002661 Pfam:PF01765 GO:GO:0005737 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0006412 eggNOG:COG0233 KO:K02838
InterPro:IPR023584 SUPFAM:SSF55194 PANTHER:PTHR20982
HOGENOM:HOG000040143 TIGRFAMs:TIGR00496 OMA:VMVEYYG
RefSeq:YP_360604.1 ProteinModelPortal:Q3AB80 SMR:Q3AB80
STRING:Q3AB80 GeneID:3728266 KEGG:chy:CHY_1784 PATRIC:21276679
BioCyc:CHYD246194:GJCN-1783-MONOMER Uniprot:Q3AB80
Length = 185
Score = 316 (116.3 bits), Expect = 2.4e-28, P = 2.4e-28
Identities = 58/121 (47%), Positives = 89/121 (73%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
+ + M++ I++++ F ++R GR+ PA+L+K+ VEYYG+ + + +A I+ P+ L+I
Sbjct: 8 EAQDHMQKAIEVLKKEFATMRVGRATPALLEKVVVEYYGTQMPVNQLATISAPEPRLLVI 67
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVV 218
QP+DK +L +IEKAI+ SDLG+TP NDG VIRL +P LT ERR+EL KV K+AEE +V
Sbjct: 68 QPWDKGALGAIEKAILKSDLGITPTNDGSVIRLAIPPLTQERRQELVKVARKKAEEARVA 127
Query: 219 M 219
+
Sbjct: 128 I 128
>TIGR_CMR|BA_3962 [details] [associations]
symbol:BA_3962 "ribosome recycling factor" species:198094
"Bacillus anthracis str. Ames" [GO:0006415 "translational
termination" evidence=ISS] [GO:0008135 "translation factor
activity, nucleic acid binding" evidence=ISS] HAMAP:MF_00040
InterPro:IPR002661 Pfam:PF01765 GO:GO:0005737 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0006412
eggNOG:COG0233 KO:K02838 InterPro:IPR023584 SUPFAM:SSF55194
PANTHER:PTHR20982 HOGENOM:HOG000040143 TIGRFAMs:TIGR00496
OMA:VMVEYYG RefSeq:NP_846205.1 RefSeq:YP_020601.1
RefSeq:YP_029926.1 PDB:4GFQ PDBsum:4GFQ ProteinModelPortal:Q81WL1
SMR:Q81WL1 DNASU:1086824 EnsemblBacteria:EBBACT00000008993
EnsemblBacteria:EBBACT00000015628 EnsemblBacteria:EBBACT00000020750
GeneID:1086824 GeneID:2819578 GeneID:2850618 KEGG:ban:BA_3962
KEGG:bar:GBAA_3962 KEGG:bat:BAS3675 ProtClustDB:PRK00083
BioCyc:BANT260799:GJAJ-3733-MONOMER
BioCyc:BANT261594:GJ7F-3850-MONOMER Uniprot:Q81WL1
Length = 185
Score = 304 (112.1 bits), Expect = 4.5e-27, P = 4.5e-27
Identities = 56/117 (47%), Positives = 83/117 (70%)
Query: 103 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYD 162
+ME+ + +VR GR++ ++LDK++V+YYG+P + +A I P++ L+IQPYD
Sbjct: 12 KMEKAVAAYSRELATVRAGRASASVLDKVQVDYYGAPTPVVQLANITVPEARLLVIQPYD 71
Query: 163 KSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVVM 219
K+S+ IEKAI+ +DLG+ P+NDG VIR+ P LT ERR++L KVV K AEE KV +
Sbjct: 72 KTSIGDIEKAILKADLGLNPSNDGTVIRIAFPALTEERRRDLVKVVKKYAEEAKVAV 128
>TIGR_CMR|DET_0374 [details] [associations]
symbol:DET_0374 "ribosome recycling factor" species:243164
"Dehalococcoides ethenogenes 195" [GO:0006412 "translation"
evidence=ISS] [GO:0008135 "translation factor activity, nucleic
acid binding" evidence=ISS] HAMAP:MF_00040 InterPro:IPR002661
Pfam:PF01765 GO:GO:0005737 GO:GO:0006412 EMBL:CP000027
GenomeReviews:CP000027_GR eggNOG:COG0233 KO:K02838
InterPro:IPR023584 SUPFAM:SSF55194 PANTHER:PTHR20982
HOGENOM:HOG000040143 TIGRFAMs:TIGR00496 OMA:VMVEYYG
ProtClustDB:PRK00083 RefSeq:YP_181120.1 ProteinModelPortal:Q3Z9H9
STRING:Q3Z9H9 GeneID:3230312 KEGG:det:DET0374 PATRIC:21607817
BioCyc:DETH243164:GJNF-374-MONOMER Uniprot:Q3Z9H9
Length = 185
Score = 304 (112.1 bits), Expect = 4.5e-27, P = 4.5e-27
Identities = 55/117 (47%), Positives = 84/117 (71%)
Query: 103 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYD 162
+M ++D++ + +RTGRS+PA+++ I+VEY G P + +A I PD + IQP+D
Sbjct: 12 KMAASLDVLSQELSGIRTGRSSPALVEHIKVEYAGVPTPINHLASIAAPDPRYITIQPWD 71
Query: 163 KSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVVM 219
+S L +IEKAI+ SDLG+ PNNDG +IRL +P L+ ERR+E+ K+V+K+ EE K+ M
Sbjct: 72 RSCLSAIEKAIMKSDLGLMPNNDGNIIRLNIPPLSEERRQEMIKMVSKRLEEDKIAM 128
>TIGR_CMR|GSU_1918 [details] [associations]
symbol:GSU_1918 "ribosome recycling factor" species:243231
"Geobacter sulfurreducens PCA" [GO:0006412 "translation"
evidence=ISS] [GO:0008135 "translation factor activity, nucleic
acid binding" evidence=ISS] HAMAP:MF_00040 InterPro:IPR002661
Pfam:PF01765 GO:GO:0005737 GO:GO:0006412 EMBL:AE017180
GenomeReviews:AE017180_GR eggNOG:COG0233 KO:K02838
InterPro:IPR023584 SUPFAM:SSF55194 PANTHER:PTHR20982
HOGENOM:HOG000040143 TIGRFAMs:TIGR00496 OMA:VMVEYYG
ProtClustDB:PRK00083 RefSeq:NP_952967.1 ProteinModelPortal:P61304
GeneID:2685328 KEGG:gsu:GSU1918 PATRIC:22026701
BioCyc:GSUL243231:GH27-1975-MONOMER Uniprot:P61304
Length = 185
Score = 301 (111.0 bits), Expect = 9.4e-27, P = 9.4e-27
Identities = 52/121 (42%), Positives = 88/121 (72%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
D+K+ ME++++ +R + VRTGR+N +LD+I V++YG+P L +A + P+ ++ I
Sbjct: 8 DMKSHMEKSVESLRREYQKVRTGRANTGLLDEIRVDFYGNPSPLNQVATLAVPEPRTITI 67
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVV 218
QP++ + IEKAI++++LG TP+NDG++IR++LP LT ERRKE+ K + K AE+ K+
Sbjct: 68 QPWETKMIPVIEKAILNANLGFTPSNDGKLIRISLPPLTEERRKEIVKSLKKTAEDAKIA 127
Query: 219 M 219
+
Sbjct: 128 I 128
>UNIPROTKB|P0A805 [details] [associations]
symbol:frr "ribosome recycling factor" species:83333
"Escherichia coli K-12" [GO:0043022 "ribosome binding"
evidence=IDA] [GO:0032790 "ribosome disassembly" evidence=IMP]
[GO:0006412 "translation" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] HAMAP:MF_00040 InterPro:IPR002661 Pfam:PF01765
GO:GO:0005737 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0006412 GO:GO:0043022 EMBL:U70214
GO:GO:0032790 EMBL:D13334 PDB:2RDO PDBsum:2RDO eggNOG:COG0233
KO:K02838 InterPro:IPR023584 SUPFAM:SSF55194 PANTHER:PTHR20982
HOGENOM:HOG000040143 TIGRFAMs:TIGR00496 OMA:VMVEYYG
ProtClustDB:PRK00083 EMBL:J05113 EMBL:M69029 PIR:A34495
RefSeq:NP_414714.1 RefSeq:YP_488474.1 PDB:1EK8 PDB:1ISE PDB:1ZN0
PDB:1ZN1 PDB:4GAS PDB:4GD1 PDBsum:1EK8 PDBsum:1ISE PDBsum:1ZN0
PDBsum:1ZN1 PDBsum:4GAS PDBsum:4GD1 ProteinModelPortal:P0A805
SMR:P0A805 DIP:DIP-48120N IntAct:P0A805 MINT:MINT-1308979
SWISS-2DPAGE:P0A805 PaxDb:P0A805 PRIDE:P0A805
EnsemblBacteria:EBESCT00000001100 EnsemblBacteria:EBESCT00000016070
GeneID:12930756 GeneID:946122 KEGG:ecj:Y75_p0168 KEGG:eco:b0172
PATRIC:32115453 EchoBASE:EB0331 EcoGene:EG10335
BioCyc:EcoCyc:EG10335-MONOMER BioCyc:ECOL316407:JW0167-MONOMER
EvolutionaryTrace:P0A805 Genevestigator:P0A805 Uniprot:P0A805
Length = 185
Score = 297 (109.6 bits), Expect = 2.5e-26, P = 2.5e-26
Identities = 53/121 (43%), Positives = 86/121 (71%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
D + RM++ ++ +T + +RTGR++P++LD I VEYYG+P L+ +A + DS +L I
Sbjct: 8 DAEVRMDKCVEAFKTQISKIRTGRASPSLLDGIVVEYYGTPTPLRQLASVTVEDSRTLKI 67
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVV 218
+D+S ++EKAI++SDLG+ PN+ G IR+ LP LT ERRK+L+K+V +AE+ +V
Sbjct: 68 NVFDRSMSPAVEKAIMASDLGLNPNSAGSDIRVPLPPLTEERRKDLTKIVRGEAEQARVA 127
Query: 219 M 219
+
Sbjct: 128 V 128
>UNIPROTKB|P66734 [details] [associations]
symbol:frr "Ribosome-recycling factor" species:1773
"Mycobacterium tuberculosis" [GO:0005618 "cell wall" evidence=IDA]
[GO:0005886 "plasma membrane" evidence=IDA] [GO:0006415
"translational termination" evidence=IDA] [GO:0008079 "translation
termination factor activity" evidence=IDA] [GO:0040007 "growth"
evidence=IMP] HAMAP:MF_00040 InterPro:IPR002661 Pfam:PF01765
GO:GO:0005886 GO:GO:0005737 GO:GO:0040007 GO:GO:0005618
EMBL:AE000516 GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR
EMBL:BX842581 GO:GO:0008079 eggNOG:COG0233 KO:K02838
InterPro:IPR023584 SUPFAM:SSF55194 PANTHER:PTHR20982
HOGENOM:HOG000040143 TIGRFAMs:TIGR00496 OMA:VMVEYYG
ProtClustDB:PRK00083 PIR:E70924 RefSeq:NP_217398.1
RefSeq:NP_337460.1 RefSeq:YP_006516334.1 PDB:1WQF PDB:1WQG PDB:1WQH
PDBsum:1WQF PDBsum:1WQG PDBsum:1WQH ProteinModelPortal:P66734
SMR:P66734 PRIDE:P66734 EnsemblBacteria:EBMYCT00000002392
EnsemblBacteria:EBMYCT00000072289 GeneID:13317674 GeneID:887464
GeneID:925331 KEGG:mtc:MT2949 KEGG:mtu:Rv2882c KEGG:mtv:RVBD_2882c
PATRIC:18128256 TubercuList:Rv2882c EvolutionaryTrace:P66734
Uniprot:P66734
Length = 185
Score = 292 (107.8 bits), Expect = 8.4e-26, P = 8.4e-26
Identities = 51/119 (42%), Positives = 83/119 (69%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
D + +ME+ + + R + +++RTGR+NP M +I ++YYG+ + +A IN P++ ++I
Sbjct: 8 DAEEKMEKAVAVARDDLSTIRTGRANPGMFSRITIDYYGAATPITQLASINVPEARLVVI 67
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKV 217
+PY+ + L++IE AI +SDLG+ P NDG +IR+ +PQLT ERR+EL K + EE KV
Sbjct: 68 KPYEANQLRAIETAIRNSDLGVNPTNDGALIRVAVPQLTEERRRELVKQAKHKGEEAKV 126
>TIGR_CMR|CPS_1556 [details] [associations]
symbol:CPS_1556 "ribosome recycling factor" species:167879
"Colwellia psychrerythraea 34H" [GO:0006412 "translation"
evidence=ISS] [GO:0008135 "translation factor activity, nucleic
acid binding" evidence=ISS] HAMAP:MF_00040 InterPro:IPR002661
Pfam:PF01765 GO:GO:0005737 GO:GO:0006412 EMBL:CP000083
GenomeReviews:CP000083_GR eggNOG:COG0233 KO:K02838
InterPro:IPR023584 SUPFAM:SSF55194 PANTHER:PTHR20982
HOGENOM:HOG000040143 TIGRFAMs:TIGR00496 OMA:VMVEYYG
RefSeq:YP_268298.1 ProteinModelPortal:Q485G7 SMR:Q485G7
STRING:Q485G7 GeneID:3518539 KEGG:cps:CPS_1556 PATRIC:21466319
BioCyc:CPSY167879:GI48-1637-MONOMER Uniprot:Q485G7
Length = 185
Score = 291 (107.5 bits), Expect = 1.1e-25, P = 1.1e-25
Identities = 54/121 (44%), Positives = 84/121 (69%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
D + RM ++I+ ++T+ +RTGR++ ++LD I VEYYG L + ++ PD+ +L I
Sbjct: 8 DAQDRMGKSIEALKTSLTKIRTGRAHASLLDNIVVEYYGMDTPLNQVGNVSVPDARNLSI 67
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVV 218
+DKS + ++EKAI+ SDLG+ P ++G +IR+ LP LT ERRK+L KVV +AE GKV
Sbjct: 68 TVFDKSMISAVEKAIMKSDLGLNPQSNGTLIRIPLPPLTEERRKDLVKVVRGEAEGGKVA 127
Query: 219 M 219
+
Sbjct: 128 I 128
>TIGR_CMR|SO_1632 [details] [associations]
symbol:SO_1632 "ribosome recycling factor" species:211586
"Shewanella oneidensis MR-1" [GO:0006412 "translation"
evidence=ISS] [GO:0008135 "translation factor activity, nucleic
acid binding" evidence=ISS] HAMAP:MF_00040 InterPro:IPR002661
Pfam:PF01765 GO:GO:0005737 GO:GO:0006412 EMBL:AE014299
GenomeReviews:AE014299_GR eggNOG:COG0233 KO:K02838
InterPro:IPR023584 SUPFAM:SSF55194 PANTHER:PTHR20982
HOGENOM:HOG000040143 TIGRFAMs:TIGR00496 OMA:VMVEYYG
ProtClustDB:PRK00083 RefSeq:NP_717243.1 ProteinModelPortal:Q8EGH2
SMR:Q8EGH2 GeneID:1169426 KEGG:son:SO_1632 PATRIC:23522898
Uniprot:Q8EGH2
Length = 185
Score = 277 (102.6 bits), Expect = 3.3e-24, P = 3.3e-24
Identities = 50/121 (41%), Positives = 81/121 (66%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
D + RM + +D + VRTGR++P++LD I+V YYG+ L +A + D+ +L +
Sbjct: 8 DAQERMGKCVDATKNQMAKVRTGRAHPSLLDSIQVSYYGTMTPLNQVANVGVEDARTLSV 67
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVV 218
+D+S+++++EKAI+SSDLG+ P + G +R+ LP LT ERRK+ KVV +AE G+V
Sbjct: 68 TVFDRSAIQAVEKAIMSSDLGLNPMSAGATLRIPLPALTEERRKDFIKVVRAEAEGGRVA 127
Query: 219 M 219
+
Sbjct: 128 I 128
>TIGR_CMR|VC_2257 [details] [associations]
symbol:VC_2257 "ribosome recycling factor" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0006417 "regulation of
translation" evidence=ISS] [GO:0045182 "translation regulator
activity" evidence=ISS] HAMAP:MF_00040 InterPro:IPR002661
Pfam:PF01765 GO:GO:0005737 GO:GO:0006412 EMBL:AE003852
GenomeReviews:AE003852_GR eggNOG:COG0233 KO:K02838
InterPro:IPR023584 SUPFAM:SSF55194 PANTHER:PTHR20982
TIGRFAMs:TIGR00496 OMA:VMVEYYG ProtClustDB:PRK00083 PIR:G82099
RefSeq:NP_231888.1 ProteinModelPortal:Q9KPV5 SMR:Q9KPV5
GeneID:2613179 KEGG:vch:VC2257 PATRIC:20083557 Uniprot:Q9KPV5
Length = 185
Score = 271 (100.5 bits), Expect = 1.4e-23, P = 1.4e-23
Identities = 48/121 (39%), Positives = 82/121 (67%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
D + RME++++ ++ + +RTGR++P++L I V+YYG+P L +A + D+ +L I
Sbjct: 8 DAQERMEKSVEALKNGLSKIRTGRAHPSLLTGISVDYYGAPTPLNQVANVIAEDARTLAI 67
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVV 218
+D+ + +EKAI+ SDLG+ P + G +IR+ LP LT ERR++L K+V +AE G+V
Sbjct: 68 TVFDRELTQKVEKAILMSDLGLNPMSAGTIIRVPLPPLTEERRRDLVKIVRGEAEGGRVA 127
Query: 219 M 219
+
Sbjct: 128 V 128
>TIGR_CMR|CBU_1383 [details] [associations]
symbol:CBU_1383 "ribosome recycling factor" species:227377
"Coxiella burnetii RSA 493" [GO:0006412 "translation" evidence=ISS]
[GO:0008135 "translation factor activity, nucleic acid binding"
evidence=ISS] HAMAP:MF_00040 InterPro:IPR002661 Pfam:PF01765
GO:GO:0005737 GO:GO:0006412 EMBL:AE016828 GenomeReviews:AE016828_GR
eggNOG:COG0233 KO:K02838 InterPro:IPR023584 SUPFAM:SSF55194
PANTHER:PTHR20982 HOGENOM:HOG000040143 TIGRFAMs:TIGR00496
OMA:VMVEYYG ProtClustDB:PRK00083 RefSeq:NP_820372.1
ProteinModelPortal:Q83BV4 SMR:Q83BV4 PRIDE:Q83BV4 GeneID:1209289
KEGG:cbu:CBU_1383 PATRIC:17931511
BioCyc:CBUR227377:GJ7S-1371-MONOMER Uniprot:Q83BV4
Length = 185
Score = 250 (93.1 bits), Expect = 2.4e-21, P = 2.4e-21
Identities = 50/121 (41%), Positives = 80/121 (66%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
D K+RME+++ ++T +RT R++P++L+ I+V+YY L +A I + +L I
Sbjct: 8 DSKSRMEKSLGSLKTELAKLRTCRAHPSLLEHIKVDYYNVETPLSQVASIAIENPRTLSI 67
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVV 218
P++K+ + IEKAI +DLG+ P G VIR+ LP LT ERRKEL++VV ++AE +V
Sbjct: 68 TPWEKNMVGPIEKAIQKADLGLNPATVGMVIRVPLPPLTEERRKELARVVREEAEHARVA 127
Query: 219 M 219
+
Sbjct: 128 I 128
>TIGR_CMR|SPO_1664 [details] [associations]
symbol:SPO_1664 "ribosome recycling factor" species:246200
"Ruegeria pomeroyi DSS-3" [GO:0006412 "translation" evidence=ISS]
[GO:0008135 "translation factor activity, nucleic acid binding"
evidence=ISS] HAMAP:MF_00040 InterPro:IPR002661 Pfam:PF01765
GO:GO:0005737 EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0006412
eggNOG:COG0233 KO:K02838 InterPro:IPR023584 SUPFAM:SSF55194
PANTHER:PTHR20982 HOGENOM:HOG000040143 TIGRFAMs:TIGR00496
OMA:VMVEYYG ProtClustDB:PRK00083 RefSeq:YP_166903.1
ProteinModelPortal:Q5LSV2 GeneID:3193529 KEGG:sil:SPO1664
PATRIC:23376653 Uniprot:Q5LSV2
Length = 187
Score = 245 (91.3 bits), Expect = 8.0e-21, P = 8.0e-21
Identities = 48/121 (39%), Positives = 76/121 (62%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
D+K RM+ + ++T F S+RTGR++ +ML+ I+VE YG + I +N P+ + I
Sbjct: 11 DLKRRMDGAMANLKTEFASLRTGRASGSMLEPIQVEAYGQMTPINQIGTVNVPEPRMVTI 70
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVV 218
+DKS + +EKAI S LG+ P +G +I L +P+L ERR+EL+KV + AE +V
Sbjct: 71 NVWDKSMVGKVEKAIRESGLGINPQLNGTIIMLPIPELNEERRRELTKVAGQYAEHARVA 130
Query: 219 M 219
+
Sbjct: 131 I 131
>TIGR_CMR|CJE_0285 [details] [associations]
symbol:CJE_0285 "ribosome recycling factor" species:195099
"Campylobacter jejuni RM1221" [GO:0006412 "translation"
evidence=ISS] [GO:0008135 "translation factor activity, nucleic
acid binding" evidence=ISS] HAMAP:MF_00040 InterPro:IPR002661
Pfam:PF01765 GO:GO:0005737 GO:GO:0006412 EMBL:CP000025
GenomeReviews:CP000025_GR eggNOG:COG0233 KO:K02838
InterPro:IPR023584 SUPFAM:SSF55194 PANTHER:PTHR20982
HOGENOM:HOG000040143 TIGRFAMs:TIGR00496 OMA:VMVEYYG
ProtClustDB:PRK00083 RefSeq:YP_178307.1 ProteinModelPortal:Q5HWM8
STRING:Q5HWM8 GeneID:3231047 KEGG:cjr:CJE0285 PATRIC:20042268
BioCyc:CJEJ195099:GJC0-290-MONOMER Uniprot:Q5HWM8
Length = 185
Score = 241 (89.9 bits), Expect = 2.1e-20, P = 2.1e-20
Identities = 44/117 (37%), Positives = 77/117 (65%)
Query: 101 KARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQP 160
K + E++++ ++ +F ++RTG+ N +LD I V+YYG+ L +A + D+S++ I P
Sbjct: 10 KTQSEKSLEALKKDFTTLRTGKVNTHILDHITVDYYGTQTPLNQVATVLASDASTISITP 69
Query: 161 YDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKV 217
++K LK+IE AI ++++G+ PNNDGE ++L P +T E+R+E K E+ KV
Sbjct: 70 WEKPLLKTIESAIAAANIGVNPNNDGESVKLFFPPMTREQREENVKQAKAMGEKAKV 126
>TIGR_CMR|ECH_0267 [details] [associations]
symbol:ECH_0267 "ribosome recycling factor" species:205920
"Ehrlichia chaffeensis str. Arkansas" [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0006412 "translation" evidence=ISS] [GO:0008135
"translation factor activity, nucleic acid binding" evidence=ISS]
HAMAP:MF_00040 InterPro:IPR002661 Pfam:PF01765 GO:GO:0005737
EMBL:CP000236 GenomeReviews:CP000236_GR GO:GO:0006412
eggNOG:COG0233 KO:K02838 InterPro:IPR023584 SUPFAM:SSF55194
PANTHER:PTHR20982 HOGENOM:HOG000040143 TIGRFAMs:TIGR00496
ProtClustDB:PRK00083 RefSeq:YP_507088.1 ProteinModelPortal:Q2GHJ5
STRING:Q2GHJ5 GeneID:3927666 KEGG:ech:ECH_0267 PATRIC:20576051
OMA:CEATTIR BioCyc:ECHA205920:GJNR-267-MONOMER Uniprot:Q2GHJ5
Length = 185
Score = 216 (81.1 bits), Expect = 9.5e-18, P = 9.5e-18
Identities = 41/119 (34%), Positives = 81/119 (68%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
D K+RME+++ + ++ + +RTGR+ ++L+ I VE YG V L +I+ ++ D+ +L+I
Sbjct: 8 DAKSRMEKSLSVYLSDIDGIRTGRARTSVLNGIVVETYGGRVKLNTISSVSVSDNKTLMI 67
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKV 217
+ +D +++ +I+ AI++S+LG + + IRLT+P +T + RK L K++ K +E+ +V
Sbjct: 68 KVWDSNNIGAIKTAIMNSNLGFGISCEATTIRLTVPDMTQDMRKNLVKLLGKISEDCRV 126
>TAIR|locus:2082309 [details] [associations]
symbol:AT3G01800 species:3702 "Arabidopsis thaliana"
[GO:0005739 "mitochondrion" evidence=ISM;IDA] [GO:0006412
"translation" evidence=IEA;ISS] [GO:0006626 "protein targeting to
mitochondrion" evidence=RCA] [GO:0019408 "dolichol biosynthetic
process" evidence=RCA] InterPro:IPR002661 Pfam:PF01765
GO:GO:0005739 EMBL:CP002686 GO:GO:0006412 KO:K02838
InterPro:IPR023584 SUPFAM:SSF55194 PANTHER:PTHR20982 EMBL:BT010432
EMBL:AK176317 EMBL:AK220929 IPI:IPI00527773 RefSeq:NP_186829.3
UniGene:At.43211 ProteinModelPortal:Q6NQM0 SMR:Q6NQM0 STRING:Q6NQM0
PRIDE:Q6NQM0 EnsemblPlants:AT3G01800.1 GeneID:821076
KEGG:ath:AT3G01800 TAIR:At3g01800 InParanoid:Q6NQM0 OMA:SMKSIEH
PhylomeDB:Q6NQM0 ProtClustDB:CLSN2680816 Genevestigator:Q6NQM0
Uniprot:Q6NQM0
Length = 267
Score = 213 (80.0 bits), Expect = 2.0e-17, P = 2.0e-17
Identities = 43/112 (38%), Positives = 68/112 (60%)
Query: 102 ARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPY 161
++ME ID + + +RTGR+ P MLD I VE G + L +A ++ D +L + PY
Sbjct: 95 SQMEAAIDALSRDLTKLRTGRAAPGMLDHIVVETGGVKMPLNHLALVSVLDPKTLSVNPY 154
Query: 162 DKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAE 213
D ++K +EKAIV+S LG+ P DG+ + ++P LT E + + K+V K +E
Sbjct: 155 DPDTVKELEKAIVASPLGLNPKLDGQRLVASIPALTKEHIQAMCKIVTKSSE 206
>TIGR_CMR|APH_0112 [details] [associations]
symbol:APH_0112 "ribosome recycling factor" species:212042
"Anaplasma phagocytophilum HZ" [GO:0006412 "translation"
evidence=ISS] [GO:0008135 "translation factor activity, nucleic
acid binding" evidence=ISS] InterPro:IPR002661 Pfam:PF01765
GO:GO:0006412 EMBL:CP000235 GenomeReviews:CP000235_GR
eggNOG:COG0233 KO:K02838 InterPro:IPR023584 SUPFAM:SSF55194
PANTHER:PTHR20982 HOGENOM:HOG000040143 TIGRFAMs:TIGR00496
ProtClustDB:PRK00083 OMA:CEATTIR RefSeq:YP_504740.1
ProteinModelPortal:Q2GLL1 STRING:Q2GLL1 GeneID:3930282
KEGG:aph:APH_0112 PATRIC:20948788
BioCyc:APHA212042:GHPM-147-MONOMER Uniprot:Q2GLL1
Length = 184
Score = 203 (76.5 bits), Expect = 2.3e-16, P = 2.3e-16
Identities = 42/115 (36%), Positives = 72/115 (62%)
Query: 103 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYD 162
RM++T M + + +RTGR + ++LD I V YYG+ V L +++ I+ + +LL+ +D
Sbjct: 13 RMDKTYAMFLNDISGIRTGRVSASLLDGISVSYYGNKVKLNTVSSISV-NGRTLLVSLWD 71
Query: 163 KSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKV 217
S L ++ AI +S++G + +RL +P+LT++ RK L K++ K AEE KV
Sbjct: 72 ASILGEVKSAIEASNMGFGMTCESSTVRLVVPELTNDVRKNLVKMLNKLAEESKV 126
>TIGR_CMR|NSE_0945 [details] [associations]
symbol:NSE_0945 "ribosome recycling factor" species:222891
"Neorickettsia sennetsu str. Miyayama" [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0006412 "translation" evidence=ISS] [GO:0008135
"translation factor activity, nucleic acid binding" evidence=ISS]
HAMAP:MF_00040 InterPro:IPR002661 Pfam:PF01765 GO:GO:0005737
GO:GO:0006412 EMBL:CP000237 GenomeReviews:CP000237_GR
eggNOG:COG0233 KO:K02838 InterPro:IPR023584 SUPFAM:SSF55194
PANTHER:PTHR20982 HOGENOM:HOG000040143 TIGRFAMs:TIGR00496
OMA:VMVEYYG RefSeq:YP_506809.1 ProteinModelPortal:Q2GCI7
STRING:Q2GCI7 PRIDE:Q2GCI7 GeneID:3931454 KEGG:nse:NSE_0945
PATRIC:22681869 ProtClustDB:CLSK2527749
BioCyc:NSEN222891:GHFU-947-MONOMER Uniprot:Q2GCI7
Length = 185
Score = 190 (71.9 bits), Expect = 5.4e-15, P = 5.4e-15
Identities = 37/117 (31%), Positives = 73/117 (62%)
Query: 103 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYD 162
++ + ++ ++ +R+G + ++LD + V + + L +A ++ ++ L +Q +D
Sbjct: 12 KLRSSYEVFLSDLKGIRSGSLSVSILDGVIVSTHMGKLRLNQVASLSVVNNKMLSVQVWD 71
Query: 163 KSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVVM 219
KS++ +++ AI++S+LGM P +G V+RL +P LT ERRKEL KV+ K + KV +
Sbjct: 72 KSTVGAVKDAILTSNLGMNPIVEGSVLRLPVPDLTEERRKELVKVLKKYGDRAKVAV 128
>DICTYBASE|DDB_G0268518 [details] [associations]
symbol:DDB_G0268518 "Ribosome-recycling factor,
mitochondrial" species:44689 "Dictyostelium discoideum" [GO:0006412
"translation" evidence=IEA] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR002661 dictyBase:DDB_G0268518
Pfam:PF01765 GO:GO:0006412 EMBL:AAFI02000003 eggNOG:COG0233
KO:K02838 InterPro:IPR023584 SUPFAM:SSF55194 PANTHER:PTHR20982
RefSeq:XP_647294.1 ProteinModelPortal:Q55G90 STRING:Q55G90
EnsemblProtists:DDB0216552 GeneID:8616100 KEGG:ddi:DDB_G0268518
InParanoid:Q55G90 OMA:IKQVNTI ProtClustDB:CLSZ2846946
Uniprot:Q55G90
Length = 263
Score = 181 (68.8 bits), Expect = 4.9e-14, P = 4.9e-14
Identities = 41/118 (34%), Positives = 68/118 (57%)
Query: 100 VKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQ 159
V ++ ++TI+ V ++R GR P +L++I VE + L +A I DS +L I
Sbjct: 91 VSSQGDKTIEYVSRELGNIRFGRVGPELLERINVETPSGNLLLPHMAMITIKDSLTLNIT 150
Query: 160 PYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKV 217
YD S L ++E+A+ +S LG+ P IR++LP+ T + R++L K V +E+ KV
Sbjct: 151 LYDSSLLSNVERALTNSGLGLNPQTFDTTIRVSLPKPTQDLRQKLIKQVNTISEDAKV 208
>UNIPROTKB|Q96E11 [details] [associations]
symbol:MRRF "Ribosome-recycling factor, mitochondrial"
species:9606 "Homo sapiens" [GO:0006412 "translation" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0032790 "ribosome
disassembly" evidence=IDA] InterPro:IPR002661 Pfam:PF01765
GO:GO:0005739 GO:GO:0006412 EMBL:CH471090 Gene3D:3.30.1360.40
InterPro:IPR024946 GO:GO:0032790 EMBL:AL162424 eggNOG:COG0233
KO:K02838 InterPro:IPR023584 SUPFAM:SSF55194 PANTHER:PTHR20982
CTD:92399 HOVERGEN:HBG061516 OrthoDB:EOG4QRH4V EMBL:AK291603
EMBL:AK298046 EMBL:AK291809 EMBL:AK292790 EMBL:AK300718
EMBL:AK316266 EMBL:BC013049 EMBL:BC053604 IPI:IPI00030596
IPI:IPI00061108 IPI:IPI00412392 IPI:IPI00514034 IPI:IPI00555800
IPI:IPI00556454 IPI:IPI00556600 RefSeq:NP_001166983.1
RefSeq:NP_620132.1 RefSeq:NP_954646.1 UniGene:Hs.368011
ProteinModelPortal:Q96E11 SMR:Q96E11 IntAct:Q96E11 STRING:Q96E11
PhosphoSite:Q96E11 DMDM:62901043 PaxDb:Q96E11 PRIDE:Q96E11
DNASU:92399 Ensembl:ENST00000297908 Ensembl:ENST00000344641
Ensembl:ENST00000373723 Ensembl:ENST00000373724
Ensembl:ENST00000373727 Ensembl:ENST00000373728
Ensembl:ENST00000373729 Ensembl:ENST00000373730
Ensembl:ENST00000394315 Ensembl:ENST00000441707
Ensembl:ENST00000467864 Ensembl:ENST00000470366
Ensembl:ENST00000489572 Ensembl:ENST00000546115 GeneID:92399
KEGG:hsa:92399 UCSC:uc010mwa.3 UCSC:uc011lyq.2 UCSC:uc022bmy.1
GeneCards:GC09P125026 HGNC:HGNC:7234 MIM:604602 neXtProt:NX_Q96E11
PharmGKB:PA31029 InParanoid:Q96E11 OMA:VMVEYYG PhylomeDB:Q96E11
GenomeRNAi:92399 NextBio:77750 Bgee:Q96E11 Genevestigator:Q96E11
GermOnline:ENSG00000148187 Uniprot:Q96E11
Length = 262
Score = 146 (56.5 bits), Expect = 7.2e-09, P = 7.2e-09
Identities = 35/120 (29%), Positives = 63/120 (52%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
+V M+ I+ ++ NFN R++P LDKI V ++L I+QI+ +L+
Sbjct: 87 EVNEEMKSVIEALKDNFNKTLNIRTSPGSLDKIAVVTADGKLALNQISQISMKSPQLILV 146
Query: 159 Q--PYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGK 216
+ + + +I KAI S + + P +G +IR+ +PQ+T E R+ L K+ + + K
Sbjct: 147 NMASFPECTAAAI-KAIRESGMNLNPEVEGTLIRVPIPQVTREHREMLVKLAKQNTNKAK 205
>UNIPROTKB|F1SLQ7 [details] [associations]
symbol:LOC100515005 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005739 "mitochondrion" evidence=IEA] [GO:0006412
"translation" evidence=IEA] InterPro:IPR002661 Pfam:PF01765
GO:GO:0005739 GO:GO:0006412 Gene3D:3.30.1360.40 InterPro:IPR024946
KO:K02838 InterPro:IPR023584 SUPFAM:SSF55194 PANTHER:PTHR20982
OMA:TREHRES GeneTree:ENSGT00390000005084 EMBL:CU041257
RefSeq:XP_003480647.1 Ensembl:ENSSSCT00000006083 GeneID:100515005
KEGG:ssc:100515005 Uniprot:F1SLQ7
Length = 262
Score = 136 (52.9 bits), Expect = 1.8e-07, P = 1.8e-07
Identities = 33/120 (27%), Positives = 63/120 (52%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
+V M+ I+ ++ NFN R++P LD+I V ++L I QI+ +L+
Sbjct: 87 EVDEEMKSVIEALKDNFNKTVNIRTSPGSLDQITVVTADGKLALNQIGQISMKSPQLILV 146
Query: 159 Q--PYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGK 216
+ + + +I KAI S + + P+ +G +IR+ +P++T E R+ L K+ + + K
Sbjct: 147 NMASFPECTAAAI-KAIRESGMNLNPDVEGTLIRVPIPKVTREHREMLVKLAKQNTNKAK 205
>UNIPROTKB|Q0VCQ4 [details] [associations]
symbol:MRRF "Ribosome-recycling factor, mitochondrial"
species:9913 "Bos taurus" [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] InterPro:IPR002661
Pfam:PF01765 GO:GO:0005739 GO:GO:0006412 Gene3D:3.30.1360.40
InterPro:IPR024946 eggNOG:COG0233 KO:K02838 InterPro:IPR023584
SUPFAM:SSF55194 PANTHER:PTHR20982 EMBL:BC120054 IPI:IPI00714526
RefSeq:NP_001069775.1 UniGene:Bt.21335 ProteinModelPortal:Q0VCQ4
SMR:Q0VCQ4 STRING:Q0VCQ4 PRIDE:Q0VCQ4 GeneID:614013 KEGG:bta:614013
CTD:92399 HOGENOM:HOG000007351 HOVERGEN:HBG061516 InParanoid:Q0VCQ4
OrthoDB:EOG4QRH4V NextBio:20898894 Uniprot:Q0VCQ4
Length = 262
Score = 133 (51.9 bits), Expect = 4.6e-07, P = 4.6e-07
Identities = 33/120 (27%), Positives = 61/120 (50%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
+V M+ I+ ++ NFN R++P LD I V + L I+QI+ +L+
Sbjct: 87 EVDEEMKSVIEALKDNFNKTVNIRTSPGALDNITVVTADGKLPLNQISQISMKSPQLILV 146
Query: 159 Q--PYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGK 216
+ + + +I KAI S + + P +G +IR+ +P++T E R+ L K+ + + K
Sbjct: 147 NMASFPECTAAAI-KAIRESGMNLNPEVEGTLIRVPIPKVTREHREMLVKLAKQNTNKAK 205
>UNIPROTKB|J9P265 [details] [associations]
symbol:MRRF "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006412 "translation" evidence=IEA]
InterPro:IPR002661 Pfam:PF01765 GO:GO:0006412 Gene3D:3.30.1360.40
InterPro:IPR024946 KO:K02838 InterPro:IPR023584 SUPFAM:SSF55194
PANTHER:PTHR20982 OMA:TREHRES CTD:92399
GeneTree:ENSGT00390000005084 EMBL:AAEX03006907 RefSeq:XP_537859.2
ProteinModelPortal:J9P265 Ensembl:ENSCAFT00000043300 GeneID:480739
KEGG:cfa:480739 Uniprot:J9P265
Length = 262
Score = 132 (51.5 bits), Expect = 6.4e-07, P = 6.4e-07
Identities = 31/120 (25%), Positives = 63/120 (52%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
+V M+ ++ ++ NFN + R++P LD+I V ++L I QI+ +L+
Sbjct: 87 EVDEEMKSVMEALKDNFNKTISIRTSPGSLDRITVVTANGKLALNQIGQISMKSPHLILV 146
Query: 159 Q--PYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGK 216
+ + + +I KAI S + + P +G +IR+ +P++T E R+ + K+ + + K
Sbjct: 147 NMASFPECTAAAI-KAIRESGMNLNPEVEGTLIRVPIPKVTREHREMMVKLAKQNTNKAK 205
>MGI|MGI:1915121 [details] [associations]
symbol:Mrrf "mitochondrial ribosome recycling factor"
species:10090 "Mus musculus" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005739 "mitochondrion" evidence=IDA] [GO:0006412
"translation" evidence=IEA] [GO:0032790 "ribosome disassembly"
evidence=ISO] InterPro:IPR002661 Pfam:PF01765 MGI:MGI:1915121
GO:GO:0005739 GO:GO:0006412 Gene3D:3.30.1360.40 InterPro:IPR024946
eggNOG:COG0233 KO:K02838 InterPro:IPR023584 SUPFAM:SSF55194
PANTHER:PTHR20982 OMA:TREHRES CTD:92399 HOGENOM:HOG000007351
HOVERGEN:HBG061516 OrthoDB:EOG4QRH4V GeneTree:ENSGT00390000005084
EMBL:AK010018 EMBL:AK032371 EMBL:BX293557 EMBL:BC019787
IPI:IPI00109501 RefSeq:NP_080698.1 UniGene:Mm.378232 PDB:1WIH
PDBsum:1WIH ProteinModelPortal:Q9D6S7 SMR:Q9D6S7 STRING:Q9D6S7
PaxDb:Q9D6S7 PRIDE:Q9D6S7 Ensembl:ENSMUST00000028250 GeneID:67871
KEGG:mmu:67871 UCSC:uc008jlj.2 InParanoid:B1B055
EvolutionaryTrace:Q9D6S7 NextBio:325787 Bgee:Q9D6S7 CleanEx:MM_MRRF
Genevestigator:Q9D6S7 GermOnline:ENSMUSG00000026887 Uniprot:Q9D6S7
Length = 262
Score = 131 (51.2 bits), Expect = 8.5e-07, P = 8.5e-07
Identities = 33/120 (27%), Positives = 60/120 (50%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
+V M+ ++ ++ NFN R+ P LD I V V+L I QI+ +L+
Sbjct: 87 EVDEDMKSVVEALKDNFNKTLNIRTAPGSLDHITVVTADGKVALNQIGQISMKSPQVILV 146
Query: 159 Q--PYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGK 216
+ + + +I KAI S + + P +G +IR+ +P++T E R+ L K+ + + K
Sbjct: 147 NMASFPECTAAAI-KAIRESGMNLNPEVEGTLIRVPIPKVTREHREMLVKLAKQNTNKAK 205
>RGD|1305897 [details] [associations]
symbol:Mrrf "mitochondrial ribosome recycling factor"
species:10116 "Rattus norvegicus" [GO:0005739 "mitochondrion"
evidence=IEA;ISO] [GO:0006412 "translation" evidence=IEA]
[GO:0032790 "ribosome disassembly" evidence=ISO] InterPro:IPR002661
Pfam:PF01765 RGD:1305897 GO:GO:0005739 GO:GO:0006412
Gene3D:3.30.1360.40 InterPro:IPR024946 eggNOG:COG0233 KO:K02838
InterPro:IPR023584 SUPFAM:SSF55194 PANTHER:PTHR20982 OMA:TREHRES
CTD:92399 HOGENOM:HOG000007351 HOVERGEN:HBG061516 OrthoDB:EOG4QRH4V
GeneTree:ENSGT00390000005084 EMBL:BC085779 IPI:IPI00372124
RefSeq:NP_001008355.1 UniGene:Rn.105234 ProteinModelPortal:Q5RKI9
SMR:Q5RKI9 STRING:Q5RKI9 PhosphoSite:Q5RKI9 PRIDE:Q5RKI9
Ensembl:ENSRNOT00000033047 GeneID:311903 KEGG:rno:311903
UCSC:RGD:1305897 InParanoid:Q5RKI9 NextBio:664438
Genevestigator:Q5RKI9 GermOnline:ENSRNOG00000025997 Uniprot:Q5RKI9
Length = 262
Score = 126 (49.4 bits), Expect = 3.8e-06, P = 3.8e-06
Identities = 32/120 (26%), Positives = 60/120 (50%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
+V M+ ++ ++ NFN R+ P LD I V ++L I QI+ +L+
Sbjct: 87 EVDEDMKSVMEALKDNFNKTLNIRTAPGSLDHITVVTADGKLALNQIGQISMKSPQLILV 146
Query: 159 Q--PYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGK 216
+ + + +I KAI S + + P +G +IR+ +P++T E R+ L K+ + + K
Sbjct: 147 NMASFPECTAAAI-KAIRESGMNLNPEVEGTLIRVPIPKVTREHREMLVKLAKQNTNKAK 205
>UNIPROTKB|Q4TT42 [details] [associations]
symbol:MRRFP1 "Protein MRRFP1" species:9606 "Homo sapiens"
[GO:0006412 "translation" evidence=IEA] InterPro:IPR002661
Pfam:PF01765 GO:GO:0006412 Gene3D:3.30.1360.40 InterPro:IPR024946
EMBL:Z83848 InterPro:IPR023584 SUPFAM:SSF55194 PANTHER:PTHR20982
HOGENOM:HOG000007351 HOVERGEN:HBG061516 OrthoDB:EOG4QRH4V
IPI:IPI00176976 SMR:Q4TT42 STRING:Q4TT42 Ensembl:ENST00000435941
HGNC:HGNC:35238 OMA:IREHREM Uniprot:Q4TT42
Length = 262
Score = 124 (48.7 bits), Expect = 6.6e-06, P = 6.6e-06
Identities = 35/115 (30%), Positives = 60/115 (52%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
+V M+ I+ + NFN ++P LDKI V ++L I QI+ +L+
Sbjct: 87 EVNEEMKSVIEARKDNFNKTLNIGTSPGSLDKIAVVTADGKLALNQIRQISVKLPQLILV 146
Query: 159 Q--PYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQ 211
+ + ++ +I KAI S + + P +G +IR+ +PQ+ E R+ L K+ AKQ
Sbjct: 147 NMASFPEFTVAAI-KAIRESGMNLNPEVEGTLIRVPIPQVIREHREMLVKL-AKQ 199
>UNIPROTKB|E1BQ58 [details] [associations]
symbol:MRRF "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0006412 "translation" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] InterPro:IPR002661 InterPro:IPR016000
Pfam:PF01765 GO:GO:0005739 GO:GO:0006412 Gene3D:3.30.1360.40
InterPro:IPR024946 KO:K02838 InterPro:IPR023584 SUPFAM:SSF55194
PANTHER:PTHR20982 OMA:TREHRES CTD:92399
GeneTree:ENSGT00390000005084 PANTHER:PTHR20982:SF4
EMBL:AADN02026362 IPI:IPI00572512 RefSeq:XP_003642346.1
RefSeq:XP_415395.1 UniGene:Gga.7262 Ensembl:ENSGALT00000002038
GeneID:417110 KEGG:gga:417110 NextBio:20820466 Uniprot:E1BQ58
Length = 259
Score = 114 (45.2 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 30/111 (27%), Positives = 59/111 (53%)
Query: 104 MERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQ--PY 161
M+ ++ ++ +FN R++ LD I V L + QI+ +++ +
Sbjct: 89 MQAVVEALKEDFNRNLNVRTSQGALDHIIVTTKDGKFPLNQLGQISQKSPQLIVVNMTSF 148
Query: 162 DKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQA 212
+S+ ++ KAI S + + P DG +IR+ +P++T E R+ L+K+ AKQ+
Sbjct: 149 PESTAAAM-KAIRESGMNLNPEVDGTLIRVPVPKVTREHRESLAKL-AKQS 197
Score = 40 (19.1 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 12/33 (36%), Positives = 14/33 (42%)
Query: 4 HFSSTGPMRSIFQLKSNPPKCLLFLPDSCHRRA 36
H SS +R QL P +C L D C A
Sbjct: 16 HCSSLAVVR---QLPQPPARCTPLLLDGCRHCA 45
>ZFIN|ZDB-GENE-040704-12 [details] [associations]
symbol:mrrf "mitochondrial ribosome recycling
factor" species:7955 "Danio rerio" [GO:0006412 "translation"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA] [GO:0003674
"molecular_function" evidence=ND] InterPro:IPR002661
InterPro:IPR016000 Pfam:PF01765 ZFIN:ZDB-GENE-040704-12
GO:GO:0005739 GO:GO:0006412 Gene3D:3.30.1360.40 InterPro:IPR024946
eggNOG:COG0233 KO:K02838 InterPro:IPR023584 SUPFAM:SSF55194
PANTHER:PTHR20982 CTD:92399 HOGENOM:HOG000007351 HOVERGEN:HBG061516
OrthoDB:EOG4QRH4V PANTHER:PTHR20982:SF4 EMBL:BC074048
IPI:IPI00513547 RefSeq:NP_001002174.1 UniGene:Dr.84906
ProteinModelPortal:Q6GMJ7 SMR:Q6GMJ7 STRING:Q6GMJ7 GeneID:431721
KEGG:dre:431721 InParanoid:Q6GMJ7 NextBio:20830957
ArrayExpress:Q6GMJ7 Uniprot:Q6GMJ7
Length = 257
Score = 120 (47.3 bits), Expect = 2.0e-05, P = 2.0e-05
Identities = 30/114 (26%), Positives = 59/114 (51%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
+VK M + ++ +F+ + R++P LD I V L + QI+ L++
Sbjct: 82 EVKEDMAAVLAALKDDFSRNLSVRTSPGALDHITVTTKDGKFPLNQLGQISMKSPQLLVV 141
Query: 159 QPYD-KSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQ 211
++ ++ +A+ S +G+ P +G +IR+ +P++T E R+ L K+ AKQ
Sbjct: 142 NMTGFPEAMVAVTRALRESSMGLNPEVEGTIIRVPVPKVTREHRENLVKL-AKQ 194
>SGD|S000001080 [details] [associations]
symbol:RRF1 "Mitochondrial ribosome recycling factor"
species:4932 "Saccharomyces cerevisiae" [GO:0006412 "translation"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA;IDA]
[GO:0032543 "mitochondrial translation" evidence=IMP] [GO:0003747
"translation release factor activity" evidence=ISO]
InterPro:IPR002661 InterPro:IPR015999 SGD:S000001080 Pfam:PF01765
GO:GO:0005739 EMBL:BK006934 EMBL:U00062 GO:GO:0032543 GO:GO:0003747
eggNOG:COG0233 KO:K02838 OrthoDB:EOG418FZ7 InterPro:IPR023584
SUPFAM:SSF55194 EMBL:AB016033 PIR:S46737 RefSeq:NP_011903.1
ProteinModelPortal:P38771 SMR:P38771 DIP:DIP-1693N IntAct:P38771
MINT:MINT-407253 STRING:P38771 PaxDb:P38771 EnsemblFungi:YHR038W
GeneID:856433 KEGG:sce:YHR038W CYGD:YHR038w HOGENOM:HOG000094410
OMA:PNNDGEV NextBio:982027 Genevestigator:P38771 GermOnline:YHR038W
PANTHER:PTHR20982 PANTHER:PTHR20982:SF1 Uniprot:P38771
Length = 230
Score = 114 (45.2 bits), Expect = 8.0e-05, P = 8.0e-05
Identities = 27/120 (22%), Positives = 66/120 (55%)
Query: 101 KARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQP 160
+ + ++T+++ + N ++ G NP + + + + + IA + ++LLI
Sbjct: 56 ETQFKKTLEIQKQKMNEIKQGNFNPKVFNSL---VFKNNRKFTDIATTSLKGKNALLITV 112
Query: 161 YDKSSLKSIEKAIVSSDLGMTP----NNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGK 216
+D +K++ +++++L +TP NND + ++++LP T+E R +++K + + EE K
Sbjct: 113 FDPKDVKTVISGVLAANLNLTPERVPNNDLQ-LKVSLPPPTTESRLKVAKDLKRVFEEYK 171
>FB|FBgn0035980 [details] [associations]
symbol:CG4447 species:7227 "Drosophila melanogaster"
[GO:0006412 "translation" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA] InterPro:IPR002661 InterPro:IPR016000 Pfam:PF01765
GO:GO:0005739 GO:GO:0006412 Gene3D:3.30.1360.40 InterPro:IPR024946
eggNOG:COG0233 InterPro:IPR023584 SUPFAM:SSF55194 PANTHER:PTHR20982
EMBL:AY069172 ProteinModelPortal:Q8T0M6 SMR:Q8T0M6 STRING:Q8T0M6
PaxDb:Q8T0M6 PRIDE:Q8T0M6 FlyBase:FBgn0035980 InParanoid:Q8T0M6
OrthoDB:EOG4H9W2V ArrayExpress:Q8T0M6 Bgee:Q8T0M6
PANTHER:PTHR20982:SF4 Uniprot:Q8T0M6
Length = 254
Score = 113 (44.8 bits), Expect = 0.00014, P = 0.00014
Identities = 23/108 (21%), Positives = 57/108 (52%)
Query: 100 VKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQ 159
+ ++M++++ ++ +F + S +D + ++ G L+ +AQI+ + ++++
Sbjct: 80 LNSQMQKSVMQMKEDFVKHLSLPSTSGAIDTLRIKVDGQEHELQELAQISRKNPKTIIVN 139
Query: 160 PYD-KSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSK 206
++ + KAI S + + P DG + + +P++T E R+ LSK
Sbjct: 140 MIGFPQTIPDVLKAIEKSGMNLNPQQDGTTLFIPIPKVTKEHRENLSK 187
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.316 0.128 0.355 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 226 213 0.00084 112 3 11 22 0.38 33
31 0.49 35
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 29
No. of states in DFA: 594 (63 KB)
Total size of DFA: 155 KB (2093 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 16.95u 0.15s 17.10t Elapsed: 00:00:01
Total cpu time: 16.95u 0.15s 17.10t Elapsed: 00:00:01
Start: Fri May 10 04:57:55 2013 End: Fri May 10 04:57:56 2013