BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 027212
         (226 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4GFQ|A Chain A, 2.65 Angstrom Resolution Crystal Structure Of Ribosome
           Recycling Factor (Frr) From Bacillus Anthracis
          Length = 209

 Score =  124 bits (312), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 56/117 (47%), Positives = 83/117 (70%)

Query: 103 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYD 162
           +ME+ +        +VR GR++ ++LDK++V+YYG+P  +  +A I  P++  L+IQPYD
Sbjct: 36  KMEKAVAAYSRELATVRAGRASASVLDKVQVDYYGAPTPVVQLANITVPEARLLVIQPYD 95

Query: 163 KSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVVM 219
           K+S+  IEKAI+ +DLG+ P+NDG VIR+  P LT ERR++L KVV K AEE KV +
Sbjct: 96  KTSIGDIEKAILKADLGLNPSNDGTVIRIAFPALTEERRRDLVKVVKKYAEEAKVAV 152


>pdb|1EH1|A Chain A, Ribosome Recycling Factor From Thermus Thermophilus
 pdb|2V46|Y Chain Y, Structure Of The Ribosome Recycling Factor Bound To The
           Thermus Thermophilus 70s Ribosome With Mrna, Asl-Phe And
           Trna-Fmet (Part 1 Of 4). This File Contains The 30s
           Subunit, Mrna, P-Site Asl, E-Site Trna And Rrf For
           Molecule 1.
 pdb|2V48|Y Chain Y, Structure Of The Ribosome Recycling Factor Bound To The
           Thermus Thermophilus 70s Ribosome With Mrna, Asl-Phe And
           Trna-Fmet (Part 3 Of 4). This File Contains The 30s
           Subunit, Mrna, P-Site Asl, E-Site Trna And Rrf For
           Molecule 2.
 pdb|2QBE|6 Chain 6, Crystal Structure Of The Bacterial Ribosome From
           Escherichia Coli In Complex With Ribosome Recycling
           Factor (Rrf). This File Contains The 50s Subunit Of The
           First 70s Ribosome, With Rrf Bound. The Entire Crystal
           Structure Contains Two 70s Ribosomes And Is Described In
           Remark 400.
 pdb|2QBG|6 Chain 6, Crystal Structure Of The Bacterial Ribosome From
           Escherichia Coli In Complex With Ribosome Recycling
           Factor (Rrf). This File Contains The 50s Subunit Of The
           Second 70s Ribosome, With Rrf Bound. The Entire Crystal
           Structure Contains Two 70s Ribosomes And Is Described In
           Remark 400.
 pdb|2QBI|6 Chain 6, Crystal Structure Of The Bacterial Ribosome From
           Escherichia Coli In Complex With Gentamicin And Ribosome
           Recycling Factor (Rrf). This File Contains The 50s
           Subunit Of The First 70s Ribosome, With Gentamicin And
           Rrf Bound. The Entire Crystal Structure Contains Two 70s
           Ribosomes And Is Described In Remark 400.
 pdb|2QBK|6 Chain 6, Crystal Structure Of The Bacterial Ribosome From
           Escherichia Coli In Complex With Gentamicin And Ribosome
           Recycling Factor (Rrf). This File Contains The 50s
           Subunit Of The Second 70s Ribosome, With Gentamicin And
           Rrf Bound. The Entire Crystal Structure Contains Two 70s
           Ribosomes And Is Described In Remark 400.
 pdb|2Z4L|6 Chain 6, Crystal Structure Of The Bacterial Ribosome From
           Escherichia Coli In Complex With Paromomycin And
           Ribosome Recycling Factor (Rrf). This File Contains The
           50s Subunit Of The First 70s Ribosome, With Paromomycin
           And Rrf Bound. The Entire Crystal Structure Contains Two
           70s Ribosomes And Is Described In Remark 400.
 pdb|2Z4N|6 Chain 6, Crystal Structure Of The Bacterial Ribosome From
           Escherichia Coli In Complex With Paromomycin And
           Ribosome Recycling Factor (Rrf). This File Contains The
           50s Subunit Of The Second 70s Ribosome, With Paromomycin
           And Rrf Bound. The Entire Crystal Structure Contains Two
           70s Ribosomes And Is Described In Remark 400.
 pdb|3J0D|J Chain J, Models For The T. Thermophilus Ribosome Recycling Factor
           Bound To The E. Coli Post-Termination Complex
 pdb|3J0E|G Chain G, Models For The T. Thermophilus Ribosome Recycling Factor
           And The E. Coli Elongation Factor G Bound To The E. Coli
           Post-Termination Complex
          Length = 185

 Score =  121 bits (304), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 52/121 (42%), Positives = 88/121 (72%)

Query: 99  DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
           + ++ M+++++++  N   +RTGR+NPA+L  ++VEYYG+ V L  IA +  PD  +L++
Sbjct: 9   ETRSHMQKSLEVLEHNLAGLRTGRANPALLLHLKVEYYGAHVPLNQIATVTAPDPRTLVV 68

Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVV 218
           Q +D+++LK+IEKAI  SDLG+ P+N G+ + + +P LT ERRK+L + V + AEEG+V 
Sbjct: 69  QSWDQNALKAIEKAIRDSDLGLNPSNKGDALYINIPPLTEERRKDLVRAVRQYAEEGRVA 128

Query: 219 M 219
           +
Sbjct: 129 I 129


>pdb|1WQF|A Chain A, Crystal Structure Of Ribosome Recycling Factor From
           Mycobacterium Tuberculosis
 pdb|1WQG|A Chain A, Crystal Structure Of Ribosome Recycling Factor From
           Mycobacterium Tuberculosis
 pdb|1WQH|A Chain A, Crystal Structure Of Ribosome Recycling Factor From
           Mycobacterium Tuberculosis
          Length = 185

 Score =  121 bits (303), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 51/119 (42%), Positives = 83/119 (69%)

Query: 99  DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
           D + +ME+ + + R + +++RTGR+NP M  +I ++YYG+   +  +A IN P++  ++I
Sbjct: 8   DAEEKMEKAVAVARDDLSTIRTGRANPGMFSRITIDYYGAATPITQLASINVPEARLVVI 67

Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKV 217
           +PY+ + L++IE AI +SDLG+ P NDG +IR+ +PQLT ERR+EL K    + EE KV
Sbjct: 68  KPYEANQLRAIETAIRNSDLGVNPTNDGALIRVAVPQLTEERRRELVKQAKHKGEEAKV 126


>pdb|1EK8|A Chain A, Crystal Structure Of The Ribosome Recycling Factor (Rrf)
           From Escherichia Coli
 pdb|1ZN0|A Chain A, Coordinates Of Rrf And Ef-G Fitted Into Cryo-Em Map Of The
           50s Subunit Bound With Both Ef-G (Gdpnp) And Rrf
 pdb|1ZN1|A Chain A, Coordinates Of Rrf Fitted Into Cryo-Em Map Of The 70s
           Post- Termination Complex
 pdb|2RDO|8 Chain 8, 50s Subunit With Ef-G(Gdpnp) And Rrf Bound
 pdb|4GAS|Y Chain Y, Allosteric Control Of The Ribosome By Small-Molecule
           Antibiotics
          Length = 185

 Score =  117 bits (293), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 53/121 (43%), Positives = 86/121 (71%)

Query: 99  DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
           D + RM++ ++  +T  + +RTGR++P++LD I VEYYG+P  L+ +A +   DS +L I
Sbjct: 8   DAEVRMDKCVEAFKTQISKIRTGRASPSLLDGIVVEYYGTPTPLRQLASVTVEDSRTLKI 67

Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVV 218
             +D+S   ++EKAI++SDLG+ PN+ G  IR+ LP LT ERRK+L+K+V  +AE+ +V 
Sbjct: 68  NVFDRSMSPAVEKAIMASDLGLNPNSAGSDIRVPLPPLTEERRKDLTKIVRGEAEQARVA 127

Query: 219 M 219
           +
Sbjct: 128 V 128


>pdb|4GD1|Y Chain Y, Structures Of The Bacterial Ribosome In Classical And
           Hybrid States Of Trna Binding
          Length = 183

 Score =  117 bits (293), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 53/121 (43%), Positives = 86/121 (71%)

Query: 99  DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
           D + RM++ ++  +T  + +RTGR++P++LD I VEYYG+P  L+ +A +   DS +L I
Sbjct: 8   DAEVRMDKCVEAFKTQISKIRTGRASPSLLDGIVVEYYGTPTPLRQLASVTVEDSRTLKI 67

Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVV 218
             +D+S   ++EKAI++SDLG+ PN+ G  IR+ LP LT ERRK+L+K+V  +AE+ +V 
Sbjct: 68  NVFDRSMSPAVEKAIMASDLGLNPNSAGSDIRVPLPPLTEERRKDLTKIVRGEAEQARVA 127

Query: 219 M 219
           +
Sbjct: 128 V 128


>pdb|1ISE|A Chain A, Crystal Structure Of A Mutant Of Ribosome Recycling Factor
           From Escherichia Coli, Arg132gly
          Length = 185

 Score =  117 bits (293), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 53/121 (43%), Positives = 86/121 (71%)

Query: 99  DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
           D + RM++ ++  +T  + +RTGR++P++LD I VEYYG+P  L+ +A +   DS +L I
Sbjct: 8   DAEVRMDKCVEAFKTQISKIRTGRASPSLLDGIVVEYYGTPTPLRQLASVTVEDSRTLKI 67

Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVV 218
             +D+S   ++EKAI++SDLG+ PN+ G  IR+ LP LT ERRK+L+K+V  +AE+ +V 
Sbjct: 68  NVFDRSMSPAVEKAIMASDLGLNPNSAGSDIRVPLPPLTEERRKDLTKIVRGEAEQARVA 127

Query: 219 M 219
           +
Sbjct: 128 V 128


>pdb|1IS1|A Chain A, Crystal Structure Of Ribosome Recycling Factor From Vibrio
           Parahaemolyticus
          Length = 185

 Score =  110 bits (274), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 51/121 (42%), Positives = 82/121 (67%)

Query: 99  DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
           D + RM+++++ ++ N + VRTGR++P++L  I VEYYG+   L  +A +   D+ +L I
Sbjct: 8   DAQERMDKSVEALKNNLSKVRTGRAHPSLLSGISVEYYGAATPLNQVANVVAEDARTLAI 67

Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVV 218
             +DK   + +EKAI+ SDLG+ P + G +IR+ LP LT ERRK+L K+V  +AE G+V 
Sbjct: 68  TVFDKELTQKVEKAIMMSDLGLNPMSAGTIIRVPLPPLTEERRKDLVKIVRGEAEGGRVA 127

Query: 219 M 219
           +
Sbjct: 128 V 128


>pdb|1DD5|A Chain A, Crystal Structure Of Thermotoga Maritima Ribosome
           Recycling Factor, Rrf
 pdb|1T1M|C Chain C, Binding Position Of Ribosome Recycling Factor (Rrf) On The
           E. Coli 70s Ribosome
          Length = 185

 Score =  108 bits (270), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 51/121 (42%), Positives = 82/121 (67%)

Query: 99  DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
           + K +M+RT++ +      +RTG+ +PA+L++I+V+YYG P  +  +A I+  +  +L+I
Sbjct: 8   EAKEKMKRTLEKIEDELRKMRTGKPSPAILEEIKVDYYGVPTPVNQLATISISEERTLVI 67

Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVV 218
           +P+DKS L  IEKAI +SDLG+ P NDG VIRL  P  T+E+R++  K   +  EEGK+ 
Sbjct: 68  KPWDKSVLSLIEKAINASDLGLNPINDGNVIRLVFPSPTTEQREKWVKKAKEIVEEGKIA 127

Query: 219 M 219
           +
Sbjct: 128 I 128


>pdb|1GE9|A Chain A, Solution Structure Of The Ribosome Recycling Factor
          Length = 184

 Score = 90.9 bits (224), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 43/112 (38%), Positives = 76/112 (67%), Gaps = 1/112 (0%)

Query: 104 MERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDK 163
           M++ ++  +     +RT R++ A++++I+VEYYGS V +K +  I+ P+ + ++IQ +D+
Sbjct: 16  MKKAVEYYKNEIAGLRTSRASTALVEEIKVEYYGSKVPIKQLGTISVPEHNQIVIQVWDQ 75

Query: 164 SSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEG 215
           +++ +IEKAI   +L + P   G VIR+TLP LT ERR+EL +++ K  EE 
Sbjct: 76  NAVPAIEKAI-REELNLNPTVQGNVIRVTLPPLTEERRRELVRLLHKITEEA 126


>pdb|2WXX|A Chain A, Crystal Structure Of Mouse Angiotensinogen In The Oxidised
           Form
 pdb|2WXX|B Chain B, Crystal Structure Of Mouse Angiotensinogen In The Oxidised
           Form
 pdb|2WXX|C Chain C, Crystal Structure Of Mouse Angiotensinogen In The Oxidised
           Form
 pdb|2WXX|D Chain D, Crystal Structure Of Mouse Angiotensinogen In The Oxidised
           Form
 pdb|2WXY|C Chain C, Crystal Structure Of Mouse Angiotensinogen In The Reduced
           Form
 pdb|2WY0|C Chain C, Crystal Structure Of Mouse Angiotensinogen In The Oxidised
           Form With Space Group P6122
          Length = 453

 Score = 32.0 bits (71), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 28/56 (50%), Gaps = 1/56 (1%)

Query: 156 LLIQPYDKSSLKSIEKAIVSSD-LGMTPNNDGEVIRLTLPQLTSERRKELSKVVAK 210
           LLIQP+  S L  +E  I  +D L    N     IRLTLPQL       L  ++A+
Sbjct: 310 LLIQPHCISDLDRVEALIFQNDLLTWIENPPPRAIRLTLPQLEIRGSYNLQDLLAE 365


>pdb|2WXZ|C Chain C, Crystal Structure Of Rat Angiotensinogen In C2 Space Group
 pdb|2WY1|A Chain A, Crystal Structure Of Rat Angiotensinogen In P321 Space
           Group
 pdb|2WY1|B Chain B, Crystal Structure Of Rat Angiotensinogen In P321 Space
           Group
          Length = 453

 Score = 29.6 bits (65), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 26/56 (46%), Gaps = 1/56 (1%)

Query: 156 LLIQPYDKSSLKSIEKAIVSSD-LGMTPNNDGEVIRLTLPQLTSERRKELSKVVAK 210
           LLIQP   S L  +E  +   D L    N     IRLTLPQL       L  ++A+
Sbjct: 310 LLIQPQCASDLDRVEVLVFQHDFLTWIKNPPPRAIRLTLPQLEIRGSYNLQDLLAQ 365


>pdb|2WXZ|A Chain A, Crystal Structure Of Rat Angiotensinogen In C2 Space Group
          Length = 453

 Score = 29.6 bits (65), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 26/56 (46%), Gaps = 1/56 (1%)

Query: 156 LLIQPYDKSSLKSIEKAIVSSD-LGMTPNNDGEVIRLTLPQLTSERRKELSKVVAK 210
           LLIQP   S L  +E  +   D L    N     IRLTLPQL       L  ++A+
Sbjct: 310 LLIQPQCASDLDRVEVLVFQHDFLTWIKNPPPRAIRLTLPQLEIRGSYNLQDLLAQ 365


>pdb|1RD5|A Chain A, Crystal Structure Of Tryptophan Synthase Alpha Chain
           Homolog Bx1: A Member Of The Chemical Plant Defense
           System
 pdb|1RD5|B Chain B, Crystal Structure Of Tryptophan Synthase Alpha Chain
           Homolog Bx1: A Member Of The Chemical Plant Defense
           System
          Length = 262

 Score = 29.3 bits (64), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 33/117 (28%), Positives = 53/117 (45%), Gaps = 24/117 (20%)

Query: 107 TIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQ--PYDKS 164
           T+D V      V    S P +L    + YY  P+  +S+A++       L++   PY  +
Sbjct: 78  TMDAVLEMLREVTPELSCPVVL----LSYY-KPIMFRSLAKMKEAGVHGLIVPDLPYVAA 132

Query: 165 -SLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVVML 220
            SL S  K           NN+ E++ LT P +  +R KE++K     A EG V ++
Sbjct: 133 HSLWSEAK-----------NNNLELVLLTTPAIPEDRMKEITK-----ASEGFVYLV 173


>pdb|3LF9|A Chain A, Crystal Structure Of Hiv Epitope-Scaffold
           4e10_d0_1is1a_001_c
          Length = 121

 Score = 28.9 bits (63), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 15/63 (23%), Positives = 34/63 (53%), Gaps = 5/63 (7%)

Query: 99  DVKARMERTIDMVRTNFNSVRTGRSNPA-----MLDKIEVEYYGSPVSLKSIAQINTPDS 153
           D + RM+++++ ++ N + VRTG          ++  +  E  G  V++++IA+    D 
Sbjct: 8   DAQERMDKSVEALKNNLSKVRTGGGGTEERRKDLVKIVRGEAEGGRVAVRNIARDAANDL 67

Query: 154 SSL 156
           ++L
Sbjct: 68  AAL 70


>pdb|2Y75|A Chain A, The Structure Of Cymr (Yrzc) The Global Cysteine Regulator
           Of B. Subtilis
 pdb|2Y75|B Chain B, The Structure Of Cymr (Yrzc) The Global Cysteine Regulator
           Of B. Subtilis
 pdb|2Y75|C Chain C, The Structure Of Cymr (Yrzc) The Global Cysteine Regulator
           Of B. Subtilis
 pdb|2Y75|D Chain D, The Structure Of Cymr (Yrzc) The Global Cysteine Regulator
           Of B. Subtilis
 pdb|2Y75|E Chain E, The Structure Of Cymr (Yrzc) The Global Cysteine Regulator
           Of B. Subtilis
 pdb|2Y75|F Chain F, The Structure Of Cymr (Yrzc) The Global Cysteine Regulator
           Of B. Subtilis
          Length = 129

 Score = 28.5 bits (62), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 5/76 (6%)

Query: 121 GRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSL--LIQPYDKSSL-KSIEKAIVSSD 177
           GR    ++ ++  ++   P SLKSIAQ N      L  L+ P   + L KSI  A     
Sbjct: 8   GRYGLTIMIELAKKHGEGPTSLKSIAQTNNLSEHYLEQLVSPLRNAGLVKSIRGAYGGYV 67

Query: 178 LGMTPN--NDGEVIRL 191
           LG  P+    G++IR+
Sbjct: 68  LGSEPDAITAGDIIRV 83


>pdb|1OAH|A Chain A, Cytochrome C Nitrite Reductase From Desulfovibrio
           Desulfuricans Atcc 27774:  The Relevance Of The Two
           Calcium Sites In The Structure Of The Catalytic Subunit
           (Nrfa).
 pdb|1OAH|B Chain B, Cytochrome C Nitrite Reductase From Desulfovibrio
           Desulfuricans Atcc 27774:  The Relevance Of The Two
           Calcium Sites In The Structure Of The Catalytic Subunit
           (Nrfa)
          Length = 519

 Score = 26.9 bits (58), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 14/47 (29%), Positives = 25/47 (53%)

Query: 165 SLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQ 211
           S K+++ A  ++D G+ P   G++ +L  P LT  R+ +      KQ
Sbjct: 450 SQKAVDLATEATDFGIAPALAGDIKKLVPPILTLSRKLQQDPEFLKQ 496


>pdb|1Y69|8 Chain 8, Rrf Domain I In Complex With The 50s Ribosomal Subunit
           From Deinococcus Radiodurans
          Length = 113

 Score = 26.9 bits (58), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 11/23 (47%), Positives = 18/23 (78%)

Query: 197 TSERRKELSKVVAKQAEEGKVVM 219
           T ERRK+L+K+V  +AE+ +V +
Sbjct: 34  TEERRKDLTKIVRGEAEQARVAV 56


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.316    0.128    0.355 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,417,167
Number of Sequences: 62578
Number of extensions: 169854
Number of successful extensions: 520
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 504
Number of HSP's gapped (non-prelim): 22
length of query: 226
length of database: 14,973,337
effective HSP length: 95
effective length of query: 131
effective length of database: 9,028,427
effective search space: 1182723937
effective search space used: 1182723937
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)