BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027212
(226 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9M1X0|RRFC_ARATH Ribosome-recycling factor, chloroplastic OS=Arabidopsis thaliana
GN=RRF PE=1 SV=2
Length = 275
Score = 268 bits (685), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 143/224 (63%), Positives = 173/224 (77%), Gaps = 11/224 (4%)
Query: 1 MATHFSSTGPMRSIFQLKSNPPKCLLFLPDSCHRRAETATCRASSVSVRQWSSAANYSRL 60
MA FSST P + + ++N K LL LPDSC R +A S S R + + +L
Sbjct: 1 MAASFSSTAPTTPVLRFRANYSKPLLSLPDSCLRIISSAI----SPSTRLIACSFKTDKL 56
Query: 61 -----VKLSNKPIVVRQLAHKRNGVVRCATIEEIEAEKSSIEKDVKARMERTIDMVRTNF 115
V LS P+V R L ++ V+R ATIEEIEAEKS+IE DVK++ME+TI+ +RT+F
Sbjct: 57 PLGAGVNLSGGPVVKRSL--QKRLVIRSATIEEIEAEKSAIETDVKSKMEKTIETLRTSF 114
Query: 116 NSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVS 175
NS+RTGRSN AMLDKIEVEYYGSPVSLKSIAQI+TPD SSLL+QPYDKSSLK+IEKAIV+
Sbjct: 115 NSIRTGRSNAAMLDKIEVEYYGSPVSLKSIAQISTPDGSSLLLQPYDKSSLKAIEKAIVN 174
Query: 176 SDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVVM 219
SDLG+TPNNDG+VIRL+LP LTS+RRKELSKVVAKQ+EEGKV +
Sbjct: 175 SDLGVTPNNDGDVIRLSLPPLTSDRRKELSKVVAKQSEEGKVAL 218
>sp|P37706|RRFC_DAUCA Ribosome-recycling factor, chloroplastic (Fragment) OS=Daucus
carota GN=RRF PE=2 SV=2
Length = 227
Score = 246 bits (627), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 119/173 (68%), Positives = 147/173 (84%), Gaps = 7/173 (4%)
Query: 51 WSSAANYSRLV----KLSNKPIVVRQLAHKRNGVVRCATIEEIEAEKSSIEKDVKARMER 106
W++AANY ++ K + K +V L+ KR G ++CAT+EEIEAEKS IEK VK RME+
Sbjct: 1 WTAAANYVKIKVGTGKFARKTVV---LSQKRTGTLKCATMEEIEAEKSLIEKSVKERMEK 57
Query: 107 TIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSL 166
TI+ V+ +FNS+RT RSNP MLDKI+VEYYG+P SLKSIAQI+TPDSSSLL+ PYDKSSL
Sbjct: 58 TIENVKASFNSIRTXRSNPDMLDKIKVEYYGTPTSLKSIAQISTPDSSSLLVNPYDKSSL 117
Query: 167 KSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVVM 219
K IEKAIV+SDLG+TPNNDG+VIRL++PQLT++RRKELSK+VAKQAEEGKV +
Sbjct: 118 KDIEKAIVNSDLGITPNNDGDVIRLSIPQLTADRRKELSKIVAKQAEEGKVAL 170
>sp|P82231|RRFC_SPIOL Ribosome-recycling factor, chloroplastic OS=Spinacia oleracea
GN=RRF PE=1 SV=1
Length = 271
Score = 243 bits (620), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 121/183 (66%), Positives = 150/183 (81%), Gaps = 5/183 (2%)
Query: 41 CRASSVSVRQWSSAANYSRL----VKLSNKPIVVRQLAHKRNGVVRCATIEEIEAEKSSI 96
C + +V W S+ANY R+ K S K +VV+QL + R G RCAT+EE+EAEKS I
Sbjct: 33 CNIARTNVSVWRSSANYVRMDCGVKKFSGKAVVVKQLQN-RAGTFRCATMEEVEAEKSLI 91
Query: 97 EKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSL 156
E + K RME+TI+ +R+NFNSVRT R++P MLD+IEVEYYG+PVSLKSIAQI+TPD+SSL
Sbjct: 92 ETNTKQRMEKTIETIRSNFNSVRTNRASPTMLDRIEVEYYGTPVSLKSIAQISTPDASSL 151
Query: 157 LIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGK 216
LI PYDKSSLK+IEKAIV+S LG++PNNDGEVIRL+LP LTS+RRKEL+KVV+K AEEGK
Sbjct: 152 LISPYDKSSLKAIEKAIVTSQLGVSPNNDGEVIRLSLPPLTSDRRKELAKVVSKLAEEGK 211
Query: 217 VVM 219
V +
Sbjct: 212 VAV 214
>sp|A3BLC3|RRFC_ORYSJ Ribosome-recycling factor, chloroplastic OS=Oryza sativa subsp.
japonica GN=Os07g0570700 PE=2 SV=2
Length = 266
Score = 218 bits (556), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 111/173 (64%), Positives = 143/173 (82%), Gaps = 6/173 (3%)
Query: 51 WSSAANYSRL----VKLSNKPIVVRQLAHKRNGVVRCATIEEIEAEKSSIEKDVKARMER 106
SS+ N+ L ++ ++P+++ Q + KR V+R ATIEEIEAEKS IE + RME+
Sbjct: 39 LSSSTNFMSLRAGPMRFYSRPLIL-QNSDKR-AVLRHATIEEIEAEKSVIEDQARERMEK 96
Query: 107 TIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSL 166
I+ V+ NFN+VRTGR+NPAMLD+IEVEYYG+PV+LKSIAQINTPD++SLLIQPYDKSSL
Sbjct: 97 AIETVQNNFNTVRTGRANPAMLDRIEVEYYGTPVNLKSIAQINTPDATSLLIQPYDKSSL 156
Query: 167 KSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVVM 219
K IEK IV+++LG+TP+NDGEVIR+T+P LTS+RRKEL+K VAK AEEGKV +
Sbjct: 157 KLIEKTIVAANLGVTPSNDGEVIRVTVPPLTSDRRKELAKTVAKLAEEGKVAI 209
>sp|A2YMU2|RRFC_ORYSI Ribosome-recycling factor, chloroplastic OS=Oryza sativa subsp.
indica GN=OsI_26546 PE=1 SV=2
Length = 266
Score = 218 bits (556), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 111/173 (64%), Positives = 143/173 (82%), Gaps = 6/173 (3%)
Query: 51 WSSAANYSRL----VKLSNKPIVVRQLAHKRNGVVRCATIEEIEAEKSSIEKDVKARMER 106
SS+ N+ L ++ ++P+++ Q + KR V+R ATIEEIEAEKS IE + RME+
Sbjct: 39 LSSSTNFMSLRAGPMRFYSRPLIL-QNSDKR-AVLRHATIEEIEAEKSVIEDQARERMEK 96
Query: 107 TIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSL 166
I+ V+ NFN+VRTGR+NPAMLD+IEVEYYG+PV+LKSIAQINTPD++SLLIQPYDKSSL
Sbjct: 97 AIETVQNNFNTVRTGRANPAMLDRIEVEYYGTPVNLKSIAQINTPDATSLLIQPYDKSSL 156
Query: 167 KSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVVM 219
K IEK IV+++LG+TP+NDGEVIR+T+P LTS+RRKEL+K VAK AEEGKV +
Sbjct: 157 KLIEKTIVAANLGVTPSNDGEVIRVTVPPLTSDRRKELAKTVAKLAEEGKVAI 209
>sp|Q2JHW2|RRF_SYNJB Ribosome-recycling factor OS=Synechococcus sp. (strain
JA-2-3B'a(2-13)) GN=frr PE=3 SV=1
Length = 182
Score = 157 bits (396), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 71/119 (59%), Positives = 99/119 (83%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
+++ M + + + +FN+VRTGR+N ++LD+I+VEYYG P LK++A + TPDSS+LLI
Sbjct: 5 EIEELMNKAVQATQRSFNTVRTGRANSSLLDRIQVEYYGVPTPLKALASLTTPDSSTLLI 64
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKV 217
QP+D S+L +IE+AIV+SDLG+TP+NDG+V+RLT+P LT ERRKELSK VAK AEEG+V
Sbjct: 65 QPFDPSTLAAIERAIVASDLGLTPSNDGKVVRLTIPPLTEERRKELSKQVAKLAEEGRV 123
>sp|Q8YXK4|RRF_NOSS1 Ribosome-recycling factor OS=Nostoc sp. (strain PCC 7120 / UTEX
2576) GN=frr PE=3 SV=1
Length = 182
Score = 155 bits (392), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 69/121 (57%), Positives = 99/121 (81%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
+ +++M+ T++ + FN++RTGR+N ++LDK+ V+YYGSP LKS+A I+TPD++++LI
Sbjct: 5 EAESKMQHTVEATQRAFNTIRTGRANASLLDKVLVDYYGSPTPLKSLANISTPDATTILI 64
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVV 218
QPYDKSSL +EKAI SD+G+TP+NDG VIRL +P LTS+RRKEL K+ AK AEEG+V
Sbjct: 65 QPYDKSSLNIVEKAISLSDVGLTPSNDGAVIRLNIPPLTSDRRKELVKIAAKYAEEGRVA 124
Query: 219 M 219
+
Sbjct: 125 I 125
>sp|Q5N3B7|RRF_SYNP6 Ribosome-recycling factor OS=Synechococcus sp. (strain ATCC 27144 /
PCC 6301 / SAUG 1402/1) GN=frr PE=3 SV=1
Length = 182
Score = 155 bits (391), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 70/121 (57%), Positives = 100/121 (82%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
DV++ M+++++ +FN++RTGR+N ++LDKI V+YYGS LKS+A I+TPD+S+L I
Sbjct: 5 DVESTMQKSVEATLRSFNTIRTGRANASLLDKIVVDYYGSETPLKSLASISTPDASTLQI 64
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVV 218
QP+D+SS+ +IEKAI SD+G+TPNNDG++IRL +P LTS+RRKEL K+ AK AEEGKV
Sbjct: 65 QPFDRSSMGAIEKAISLSDIGLTPNNDGQIIRLNIPPLTSDRRKELVKLAAKYAEEGKVA 124
Query: 219 M 219
+
Sbjct: 125 I 125
>sp|Q31QY0|RRF_SYNE7 Ribosome-recycling factor OS=Synechococcus elongatus (strain PCC
7942) GN=frr PE=3 SV=1
Length = 182
Score = 155 bits (391), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 70/121 (57%), Positives = 100/121 (82%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
DV++ M+++++ +FN++RTGR+N ++LDKI V+YYGS LKS+A I+TPD+S+L I
Sbjct: 5 DVESTMQKSVEATLRSFNTIRTGRANASLLDKIVVDYYGSETPLKSLASISTPDASTLQI 64
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVV 218
QP+D+SS+ +IEKAI SD+G+TPNNDG++IRL +P LTS+RRKEL K+ AK AEEGKV
Sbjct: 65 QPFDRSSMGAIEKAISLSDIGLTPNNDGQIIRLNIPPLTSDRRKELVKLAAKYAEEGKVA 124
Query: 219 M 219
+
Sbjct: 125 I 125
>sp|Q8DM64|RRF_THEEB Ribosome-recycling factor OS=Thermosynechococcus elongatus (strain
BP-1) GN=frr PE=3 SV=1
Length = 182
Score = 154 bits (389), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 68/121 (56%), Positives = 98/121 (80%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
DV+ RM+++++ + +FNS+RTGR+N A+LD++ V+YYG+ L+S+A ++TPD++++LI
Sbjct: 5 DVEERMQKSVEATQHDFNSIRTGRANAALLDRVMVDYYGTETPLRSLANVSTPDATTILI 64
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVV 218
QPYD+S+L SIEKAI SDLG+TPNNDG +RL +P LT+ERRKEL K AK AE GKV
Sbjct: 65 QPYDRSTLASIEKAIQLSDLGLTPNNDGSSVRLNIPPLTTERRKELVKTAAKIAEGGKVA 124
Query: 219 M 219
+
Sbjct: 125 I 125
>sp|Q10Y49|RRF_TRIEI Ribosome-recycling factor OS=Trichodesmium erythraeum (strain
IMS101) GN=frr PE=3 SV=1
Length = 182
Score = 153 bits (387), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 69/120 (57%), Positives = 95/120 (79%)
Query: 98 KDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLL 157
K+ + +M++ I+ + +FN+VRTGR+N ++LD++ VEYYGSP LKS+A I PD+S++
Sbjct: 4 KEAEEKMQKAIEATKNSFNTVRTGRANASLLDRVMVEYYGSPTQLKSMANIGIPDASTIT 63
Query: 158 IQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKV 217
IQPYDK+SL IEKAI SD+G+TPNNDG +IRL +P LT+ERR+E+ K AK AEEGKV
Sbjct: 64 IQPYDKTSLGLIEKAINMSDVGLTPNNDGSIIRLNIPALTAERRQEMVKKTAKLAEEGKV 123
>sp|Q0I8L4|RRF_SYNS3 Ribosome-recycling factor OS=Synechococcus sp. (strain CC9311)
GN=frr PE=3 SV=1
Length = 182
Score = 153 bits (387), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 66/121 (54%), Positives = 95/121 (78%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
D++A M ++++ + NFN++RTGR+NP++LD+I VEYYG+ LKS+A ++TPDS ++ +
Sbjct: 5 DLEANMRKSVEATQRNFNTIRTGRANPSLLDRINVEYYGADTPLKSLASLSTPDSQTIAV 64
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVV 218
QP+D SL IEKAI +SDLG TPNNDG++IR+ +P LT ERRKE K+ AK +EEGKV
Sbjct: 65 QPFDMGSLALIEKAIATSDLGFTPNNDGKIIRINVPPLTEERRKEFCKLAAKYSEEGKVA 124
Query: 219 M 219
+
Sbjct: 125 L 125
>sp|Q46GQ5|RRF_PROMT Ribosome-recycling factor OS=Prochlorococcus marinus (strain
NATL2A) GN=frr PE=3 SV=1
Length = 182
Score = 152 bits (383), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 68/122 (55%), Positives = 94/122 (77%)
Query: 98 KDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLL 157
+++K M ++I+ + NFN++RTGR+N ++LD+I VEYYG+ LKS+A I TPDS ++
Sbjct: 4 QELKTTMSKSIEAAQRNFNTIRTGRANTSLLDRISVEYYGAETPLKSLATITTPDSQTIA 63
Query: 158 IQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKV 217
IQP+D SL SIEKAI +SDLG TPNNDG++IR+ +P LT ERRKE K+ +K AEEGKV
Sbjct: 64 IQPFDLGSLASIEKAIATSDLGFTPNNDGKIIRINVPPLTEERRKEFCKLASKYAEEGKV 123
Query: 218 VM 219
+
Sbjct: 124 AL 125
>sp|P74456|RRF_SYNY3 Ribosome-recycling factor OS=Synechocystis sp. (strain PCC 6803 /
Kazusa) GN=frr PE=3 SV=1
Length = 182
Score = 152 bits (383), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 68/121 (56%), Positives = 97/121 (80%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
++K M+++++ + +FN++RTGR+N ++LD+I VEYYG+ LKS+A I TPD+S+++I
Sbjct: 5 ELKDHMQKSVEATQRSFNTIRTGRANASLLDRITVEYYGAETPLKSLATIGTPDASTIVI 64
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVV 218
QP+D S+ +IEKAI SDLG+TPNNDG+VIRL +P LT+ERRKEL KV K AEEGKV
Sbjct: 65 QPFDMGSIGTIEKAISLSDLGLTPNNDGKVIRLNIPPLTAERRKELVKVAGKLAEEGKVA 124
Query: 219 M 219
+
Sbjct: 125 I 125
>sp|A2C0Y0|RRF_PROM1 Ribosome-recycling factor OS=Prochlorococcus marinus (strain
NATL1A) GN=frr PE=3 SV=1
Length = 182
Score = 150 bits (380), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 67/122 (54%), Positives = 94/122 (77%)
Query: 98 KDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLL 157
+++K M ++++ + NFN++RTGR+N ++LD+I VEYYG+ LKS+A I TPDS ++
Sbjct: 4 QELKNTMSKSVEAAQRNFNTIRTGRANTSLLDRISVEYYGAETPLKSLATITTPDSQTIA 63
Query: 158 IQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKV 217
IQP+D SL SIEKAI +SDLG TPNNDG++IR+ +P LT ERRKE K+ +K AEEGKV
Sbjct: 64 IQPFDLGSLASIEKAIATSDLGFTPNNDGKIIRINVPPLTEERRKEFCKLASKYAEEGKV 123
Query: 218 VM 219
+
Sbjct: 124 AL 125
>sp|Q7V6C1|RRF_PROMM Ribosome-recycling factor OS=Prochlorococcus marinus (strain MIT
9313) GN=frr PE=3 SV=1
Length = 182
Score = 150 bits (379), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 65/122 (53%), Positives = 95/122 (77%)
Query: 98 KDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLL 157
+++K M ++++ + NF ++RTGR+NP++LD+I VEYYG+ LKS+A I+TPDS ++
Sbjct: 4 QELKDNMHKSVEATQRNFATIRTGRANPSLLDRINVEYYGTETPLKSLATISTPDSQTIA 63
Query: 158 IQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKV 217
IQP+D S+ IEKAI +SDLG+TPNNDG++IR+ +P LT ERRKE K+ A+ AEEGKV
Sbjct: 64 IQPFDNGSMGLIEKAIATSDLGLTPNNDGKIIRINVPPLTEERRKEFCKLAARYAEEGKV 123
Query: 218 VM 219
+
Sbjct: 124 AL 125
>sp|Q3ALP8|RRF_SYNSC Ribosome-recycling factor OS=Synechococcus sp. (strain CC9605)
GN=frr PE=3 SV=1
Length = 182
Score = 150 bits (378), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 66/122 (54%), Positives = 96/122 (78%)
Query: 98 KDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLL 157
+D++A M ++++ + NFN++RTGR+N ++LD+I VEYYG+ LKS+A ++TPDS ++
Sbjct: 4 QDLEASMRKSVEATQRNFNTIRTGRANSSLLDRISVEYYGAETPLKSLATLSTPDSQTIQ 63
Query: 158 IQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKV 217
IQP+D S+L SIEKAI S+LG TPNNDG++IR+ +P LT ERRKE K+ +K AEEGKV
Sbjct: 64 IQPFDISALASIEKAIAMSELGFTPNNDGKIIRINVPPLTEERRKEFCKLASKYAEEGKV 123
Query: 218 VM 219
+
Sbjct: 124 AL 125
>sp|Q7U5F4|RRF_SYNPX Ribosome-recycling factor OS=Synechococcus sp. (strain WH8102)
GN=frr PE=3 SV=1
Length = 182
Score = 149 bits (377), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 66/122 (54%), Positives = 96/122 (78%)
Query: 98 KDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLL 157
+D++A M ++++ + NFN++RTGR+N ++LD+I VEYYG+ LKS+A ++TPDS ++
Sbjct: 4 QDLEASMRKSVEATQRNFNTIRTGRANSSLLDRISVEYYGAETPLKSLATLSTPDSQTIQ 63
Query: 158 IQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKV 217
IQP+D S+L SIEKAI S+LG TPNNDG++IR+ +P LT ERRKE K+ +K AEEGKV
Sbjct: 64 IQPFDISALASIEKAIAMSELGFTPNNDGKIIRINVPPLTEERRKEFCKLASKYAEEGKV 123
Query: 218 VM 219
+
Sbjct: 124 AL 125
>sp|B7K7R4|RRF_CYAP7 Ribosome-recycling factor OS=Cyanothece sp. (strain PCC 7424)
GN=frr PE=3 SV=1
Length = 182
Score = 149 bits (377), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 66/121 (54%), Positives = 96/121 (79%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
+V+ M++TI+ + +FN++RTGR+N A+LD++ V+YYG+ LKS+A I TPD++++ I
Sbjct: 5 EVQDNMQKTIESTQRSFNTIRTGRANSALLDRVMVDYYGTETPLKSLANITTPDATTIAI 64
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVV 218
QPYD+ S+ IEKAI SD+G+TPNNDG++IRL +P LT+ERRKEL K+ K AEEGKV
Sbjct: 65 QPYDRGSMGQIEKAIQLSDIGLTPNNDGQMIRLNIPPLTTERRKELVKLAGKLAEEGKVA 124
Query: 219 M 219
+
Sbjct: 125 I 125
>sp|B8HL79|RRF_CYAP4 Ribosome-recycling factor OS=Cyanothece sp. (strain PCC 7425 / ATCC
29141) GN=frr PE=3 SV=1
Length = 182
Score = 149 bits (377), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 68/119 (57%), Positives = 95/119 (79%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
DV+ M+++++ + FN++RTGR+N ++LD++ VEYYG+ L+S+A I+TPDSS++ I
Sbjct: 5 DVEDHMQKSVEATQRAFNTIRTGRANTSLLDRVTVEYYGAETPLRSLANISTPDSSTIAI 64
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKV 217
QP+D++SL IEKAI SDLG+TPNNDG VIRL +P LTS+RRKEL K +K AEEGKV
Sbjct: 65 QPFDRNSLNLIEKAISMSDLGLTPNNDGTVIRLNIPPLTSDRRKELVKTASKLAEEGKV 123
>sp|Q3AV97|RRF_SYNS9 Ribosome-recycling factor OS=Synechococcus sp. (strain CC9902)
GN=frr PE=3 SV=1
Length = 182
Score = 149 bits (376), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 67/122 (54%), Positives = 95/122 (77%)
Query: 98 KDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLL 157
KD++A M ++++ + NFN++RTGR+N ++LD+I VEYYG+ LKS+A ++TPDS ++
Sbjct: 4 KDLEASMRKSLEATQRNFNTIRTGRANSSLLDRISVEYYGADTPLKSLATLSTPDSQTIQ 63
Query: 158 IQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKV 217
IQP+D S L +IEKAI S+LG TPNNDG+VIR+ +P LT ERRKE K+ +K AEEGKV
Sbjct: 64 IQPFDISGLAAIEKAIAMSELGFTPNNDGKVIRINVPPLTEERRKEFCKMASKYAEEGKV 123
Query: 218 VM 219
+
Sbjct: 124 AL 125
>sp|B2IVW4|RRF_NOSP7 Ribosome-recycling factor OS=Nostoc punctiforme (strain ATCC 29133
/ PCC 73102) GN=frr PE=3 SV=1
Length = 182
Score = 149 bits (375), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 66/121 (54%), Positives = 97/121 (80%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
D K++M+ +++ + FN++RTGR+N ++LDK+ V+YYGSP LKS+A I+TPD+S++LI
Sbjct: 5 DAKSKMQSSVESTQRAFNTIRTGRANASLLDKVLVDYYGSPTPLKSLANISTPDASTILI 64
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVV 218
QPY++++L IEKAI SD+G+TP+NDG VIRL +P LTS+RRKE K+ K AEEG+V
Sbjct: 65 QPYERNTLNIIEKAISLSDVGLTPSNDGSVIRLNIPPLTSDRRKEFVKMATKYAEEGRVA 124
Query: 219 M 219
+
Sbjct: 125 I 125
>sp|B1X0Q1|RRF_CYAA5 Ribosome-recycling factor OS=Cyanothece sp. (strain ATCC 51142)
GN=frr PE=3 SV=1
Length = 182
Score = 148 bits (374), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 64/121 (52%), Positives = 96/121 (79%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
D+K M+++++ + +FN++RTGR+N ++LD++ VEYYG+ L +A I+TPD+++++I
Sbjct: 5 DLKENMQKSVEATQRSFNTIRTGRANASILDRVTVEYYGTETPLYQLANISTPDATTIMI 64
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVV 218
QPYDK S+ IEKAI SD+G+TPNNDG+VIRL +P LT ERRK+L K+ +K AEEGKV
Sbjct: 65 QPYDKGSMGQIEKAIQMSDVGLTPNNDGQVIRLNIPPLTEERRKDLVKLASKMAEEGKVA 124
Query: 219 M 219
+
Sbjct: 125 I 125
>sp|Q7V2F9|RRF_PROMP Ribosome-recycling factor OS=Prochlorococcus marinus subsp.
pastoris (strain CCMP1986 / MED4) GN=frr PE=3 SV=1
Length = 182
Score = 147 bits (371), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 66/123 (53%), Positives = 98/123 (79%)
Query: 97 EKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSL 156
E+++++ M ++++ + NFN++RTGR+N ++LD+I VEYYG+ +KS+A I+T DS ++
Sbjct: 3 EQEIQSSMNKSVEATQRNFNTIRTGRANASLLDRISVEYYGAETPIKSLASISTIDSQTI 62
Query: 157 LIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGK 216
IQP+D SSL++IEKAI SDLG+TPNNDG+VIR+ +P LT ERRKE K+ +K AEEGK
Sbjct: 63 SIQPFDISSLQTIEKAISVSDLGITPNNDGKVIRINVPPLTEERRKEFCKLASKYAEEGK 122
Query: 217 VVM 219
V +
Sbjct: 123 VAL 125
>sp|A8MHH2|RRF_ALKOO Ribosome-recycling factor OS=Alkaliphilus oremlandii (strain
OhILAs) GN=frr PE=3 SV=1
Length = 185
Score = 147 bits (371), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 69/127 (54%), Positives = 95/127 (74%)
Query: 93 KSSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPD 152
K I K+++ +M +TI+ ++ S+R GR+NPAMLD+I VEYYGSP +K IA I P+
Sbjct: 2 KMEIHKNLEEKMNKTINALKDELASIRAGRANPAMLDRIVVEYYGSPTPIKQIAAITAPE 61
Query: 153 SSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQA 212
+ IQPYD S+L SIEKAI+ SDLG+ P+NDG++IR+ +PQLT ERRKEL+KV K +
Sbjct: 62 PRIISIQPYDGSALSSIEKAILQSDLGVNPSNDGKLIRIIVPQLTEERRKELTKVAKKTS 121
Query: 213 EEGKVVM 219
E+ KVV+
Sbjct: 122 EDAKVVL 128
>sp|A5GJE9|RRF_SYNPW Ribosome-recycling factor OS=Synechococcus sp. (strain WH7803)
GN=frr PE=3 SV=1
Length = 182
Score = 146 bits (368), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 65/121 (53%), Positives = 94/121 (77%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
D+++ M ++++ + NFN++RTGR+N ++LD+I VEYYG+ LKS+A ++TPDS ++ I
Sbjct: 5 DLESSMRKSVEATQRNFNTIRTGRANSSLLDRISVEYYGAETPLKSLATLSTPDSQTIQI 64
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVV 218
QP+D S+L IEKAI S+LG TPNNDG+VIR+ +P LT ERRKE K+ +K AEEGKV
Sbjct: 65 QPFDISALALIEKAIAMSELGFTPNNDGKVIRINVPPLTEERRKEFCKLASKYAEEGKVA 124
Query: 219 M 219
+
Sbjct: 125 L 125
>sp|B0JKT7|RRF_MICAN Ribosome-recycling factor OS=Microcystis aeruginosa (strain
NIES-843) GN=frr PE=3 SV=1
Length = 182
Score = 145 bits (367), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 65/121 (53%), Positives = 98/121 (80%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
+V+ +M++T++ + FN++RTGR+N ++LD+I VEYYG LKS+A I+TPD++++ I
Sbjct: 5 EVQDQMQKTVESTQRAFNTIRTGRANASLLDRIVVEYYGMETPLKSLATISTPDATTIAI 64
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVV 218
QP+D++S+ +IEKAI SD+G+TP+NDG+ IRL +P LTS+RRKEL K+ AK AEEGKV
Sbjct: 65 QPFDRTSMGAIEKAISLSDVGLTPSNDGQTIRLNIPPLTSDRRKELVKLAAKLAEEGKVA 124
Query: 219 M 219
+
Sbjct: 125 I 125
>sp|A9BEE4|RRF_PROM4 Ribosome-recycling factor OS=Prochlorococcus marinus (strain MIT
9211) GN=frr PE=3 SV=1
Length = 182
Score = 145 bits (367), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 66/124 (53%), Positives = 95/124 (76%)
Query: 96 IEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSS 155
I K+++ M ++++ + NFN++RTGR+N ++LD++ VEYYG+ LKS+A I+TPDS +
Sbjct: 2 ITKELEQNMRKSVEAAQRNFNTIRTGRANTSLLDRLTVEYYGADTPLKSLATISTPDSQT 61
Query: 156 LLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEG 215
+ IQP+D SSL IEK+I SDLG TPNNDG++IR+ +P LT ERRKE K+ +K AEEG
Sbjct: 62 ISIQPFDLSSLVLIEKSIAMSDLGFTPNNDGKIIRINIPPLTEERRKEFCKLASKYAEEG 121
Query: 216 KVVM 219
KV +
Sbjct: 122 KVAL 125
>sp|A2BVI3|RRF_PROM5 Ribosome-recycling factor OS=Prochlorococcus marinus (strain MIT
9515) GN=frr PE=3 SV=1
Length = 182
Score = 145 bits (365), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 65/123 (52%), Positives = 96/123 (78%)
Query: 97 EKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSL 156
E+++++ M ++++ + NFN++RTGR+N ++LD+I VEYYG+ +KS+A I T DS ++
Sbjct: 3 EQEIQSSMNKSVEATQRNFNTIRTGRANASLLDRISVEYYGAETPIKSLASIATVDSQTI 62
Query: 157 LIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGK 216
IQP+D S L++IEKAI SDLG+TPNNDG+VIR+ +P LT ERRKE K+ +K AEEGK
Sbjct: 63 SIQPFDISCLQAIEKAISMSDLGITPNNDGKVIRINVPPLTEERRKEFCKLASKYAEEGK 122
Query: 217 VVM 219
V +
Sbjct: 123 VAL 125
>sp|A2BQ02|RRF_PROMS Ribosome-recycling factor OS=Prochlorococcus marinus (strain
AS9601) GN=frr PE=3 SV=1
Length = 182
Score = 144 bits (364), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 65/123 (52%), Positives = 96/123 (78%)
Query: 97 EKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSL 156
EK+++ M ++I+ + NFN++RTGR+N ++LD++ VEYYG+ +KS+A I+T DS ++
Sbjct: 3 EKEIQENMNKSIEATQRNFNTIRTGRANASLLDRVSVEYYGAETPIKSLATISTVDSQTI 62
Query: 157 LIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGK 216
IQP+D S L++IEK+I SDLG+TPNNDG+VIR+ +P LT ERRKE K+ +K AEEGK
Sbjct: 63 SIQPFDISCLQAIEKSISMSDLGITPNNDGKVIRINVPPLTEERRKEFCKLASKYAEEGK 122
Query: 217 VVM 219
V +
Sbjct: 123 VAL 125
>sp|B1XJ13|RRF_SYNP2 Ribosome-recycling factor OS=Synechococcus sp. (strain ATCC 27264 /
PCC 7002 / PR-6) GN=frr PE=3 SV=1
Length = 182
Score = 144 bits (364), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 65/121 (53%), Positives = 94/121 (77%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
+++ M++TI+ + +FN++RTGR++ ++LD+I VEYYG+ LKS+A I+TPDSS+++I
Sbjct: 5 ELRENMQKTIEATQRSFNTLRTGRASASLLDRITVEYYGAETPLKSLASISTPDSSTIMI 64
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVV 218
QP+D+ SL +E+AI SDLG+TPNNDG IRL +P LT ERR+EL K K AEEGKV
Sbjct: 65 QPFDRGSLSDVERAISMSDLGLTPNNDGTNIRLNIPPLTKERRQELVKTAGKLAEEGKVA 124
Query: 219 M 219
+
Sbjct: 125 L 125
>sp|A6TRM0|RRF_ALKMQ Ribosome-recycling factor OS=Alkaliphilus metalliredigens (strain
QYMF) GN=frr PE=3 SV=1
Length = 185
Score = 144 bits (364), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 63/125 (50%), Positives = 96/125 (76%)
Query: 95 SIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSS 154
+ K ++ +M +T+ +++ +FNS+R G++NP+MLD+I V+YYGS LK +A ++ P+
Sbjct: 4 EVHKRLEEKMTKTLGVLKDDFNSIRAGKANPSMLDRITVDYYGSITPLKQVASVSAPEPR 63
Query: 155 SLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEE 214
L+IQPYD S + IEKA++ SDLG+ P+NDG++IRL +PQLT ERRKEL+KVV + AEE
Sbjct: 64 LLIIQPYDPSVINGIEKALMMSDLGLNPSNDGKIIRLNIPQLTEERRKELTKVVKRVAEE 123
Query: 215 GKVVM 219
G+V +
Sbjct: 124 GRVAL 128
>sp|Q31C13|RRF_PROM9 Ribosome-recycling factor OS=Prochlorococcus marinus (strain MIT
9312) GN=frr PE=3 SV=1
Length = 182
Score = 144 bits (363), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 65/123 (52%), Positives = 96/123 (78%)
Query: 97 EKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSL 156
E++++ M ++I+ + NFN++RTGR+N ++LD+I VEYYG+ +KS+A I+T DS ++
Sbjct: 3 EQEIQENMNKSIEATQRNFNTIRTGRANASLLDRISVEYYGAETPIKSLATISTVDSQTI 62
Query: 157 LIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGK 216
IQP+D S L++IEK+I SDLG+TPNNDG+VIR+ +P LT ERRKE K+ +K AEEGK
Sbjct: 63 SIQPFDISCLQAIEKSISMSDLGITPNNDGKVIRINVPPLTEERRKEFCKLASKYAEEGK 122
Query: 217 VVM 219
V +
Sbjct: 123 VAL 125
>sp|Q0AYK1|RRF_SYNWW Ribosome-recycling factor OS=Syntrophomonas wolfei subsp. wolfei
(strain Goettingen) GN=frr PE=3 SV=1
Length = 185
Score = 144 bits (362), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 66/121 (54%), Positives = 92/121 (76%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
D + RM++TI+ +R + S+R GR+NPAML+KI V+YYG P + +A I P++ L+I
Sbjct: 8 DTEERMKKTIEHLRKDLASLRAGRANPAMLEKIMVDYYGQPTPINQLANITVPEARLLVI 67
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVV 218
QP+DK+ + SIEKAI+ SDLG+ P+NDG VIRL +PQLT ERRKEL KV+ K+AEE +V
Sbjct: 68 QPWDKTIIASIEKAIMKSDLGINPSNDGNVIRLVIPQLTEERRKELVKVLRKRAEEARVA 127
Query: 219 M 219
+
Sbjct: 128 V 128
>sp|A8G3N6|RRF_PROM2 Ribosome-recycling factor OS=Prochlorococcus marinus (strain MIT
9215) GN=frr PE=3 SV=1
Length = 182
Score = 143 bits (361), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 64/123 (52%), Positives = 96/123 (78%)
Query: 97 EKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSL 156
EK+++ M ++I+ + NFN++RTGR+N ++LD++ V+YYG+ +KS+A I+T DS ++
Sbjct: 3 EKEIQENMNKSIEATQRNFNTIRTGRANASLLDRVSVDYYGAETPIKSLATISTIDSQTI 62
Query: 157 LIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGK 216
IQP+D S L++IEK+I SDLG+TPNNDG+VIR+ +P LT ERRKE K+ +K AEEGK
Sbjct: 63 SIQPFDISCLQAIEKSISMSDLGITPNNDGKVIRINVPPLTEERRKEFCKLASKYAEEGK 122
Query: 217 VVM 219
V +
Sbjct: 123 VAL 125
>sp|B0THE0|RRF_HELMI Ribosome-recycling factor OS=Heliobacterium modesticaldum (strain
ATCC 51547 / Ice1) GN=frr PE=3 SV=1
Length = 185
Score = 143 bits (360), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 62/126 (49%), Positives = 96/126 (76%)
Query: 94 SSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDS 153
+ I+K+ + +M++T++ +R + +R GR+NPA+L+K+ VEYYG+P + +A I+ P++
Sbjct: 3 NEIKKETEDKMKKTVEALRKEYQHIRAGRANPALLEKVTVEYYGAPTPVNQLANISAPEA 62
Query: 154 SSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAE 213
L+IQP+DKS L ++EKAI+ SDLG+TP +DG VIRL +PQLT ERR EL K V K+AE
Sbjct: 63 RLLVIQPWDKSVLPALEKAILKSDLGLTPTSDGAVIRLVIPQLTQERRSELVKTVKKRAE 122
Query: 214 EGKVVM 219
E +V++
Sbjct: 123 EHRVIL 128
>sp|Q7VD62|RRF_PROMA Ribosome-recycling factor OS=Prochlorococcus marinus (strain SARG /
CCMP1375 / SS120) GN=frr PE=3 SV=1
Length = 182
Score = 141 bits (355), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 63/122 (51%), Positives = 93/122 (76%)
Query: 98 KDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLL 157
++V+ M+++++ + NFN++RTGR+N ++LD++ VEYYG+ LKS+A I+TPDS +L
Sbjct: 4 QEVELNMQKSVEACQRNFNTIRTGRANTSLLDRLTVEYYGADTPLKSLATISTPDSQTLA 63
Query: 158 IQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKV 217
IQP+D SL IEKAI SDLG TPNNDG++IR+ +P LT ERRK+ K+ +K AEE K+
Sbjct: 64 IQPFDLGSLGLIEKAISISDLGFTPNNDGKIIRINIPPLTEERRKQFCKLASKYAEEAKI 123
Query: 218 VM 219
+
Sbjct: 124 SL 125
>sp|Q5WFT1|RRF_BACSK Ribosome-recycling factor OS=Bacillus clausii (strain KSM-K16)
GN=frr PE=3 SV=1
Length = 185
Score = 140 bits (354), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 63/124 (50%), Positives = 92/124 (74%)
Query: 96 IEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSS 155
I+ D K RM++ ID++ +R GR+NPA+LD++ VEYYG+ L +A + P++
Sbjct: 5 IKADAKTRMDKAIDVLSRELAKLRAGRANPALLDRVTVEYYGAQTPLNQLASVTVPEARL 64
Query: 156 LLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEG 215
LLI PYDK+++ SIEKAI+ SDLG+TP+NDG+VIR+ +P LT ERRK+L ++V+K AEE
Sbjct: 65 LLITPYDKTAVASIEKAILKSDLGLTPSNDGQVIRIAIPPLTEERRKDLVRLVSKTAEES 124
Query: 216 KVVM 219
KV +
Sbjct: 125 KVAV 128
>sp|Q7NNX0|RRF_GLOVI Ribosome-recycling factor OS=Gloeobacter violaceus (strain PCC
7421) GN=frr PE=3 SV=1
Length = 182
Score = 140 bits (353), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 64/116 (55%), Positives = 89/116 (76%)
Query: 104 MERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDK 163
M + I+ NF ++RTGR++ ++LD+I VEYYG P LK++A I TPD+S++LIQPYD
Sbjct: 10 MRKAIEATAGNFATIRTGRASTSLLDRINVEYYGQPTPLKTLATITTPDASTVLIQPYDP 69
Query: 164 SSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVVM 219
SSL+ IEK I+ SDLG+ P+NDG+ IRL +P LT+ERRK+L KV+ AEEG+V +
Sbjct: 70 SSLRLIEKTILESDLGLPPSNDGKTIRLNIPPLTAERRKDLVKVLRNLAEEGRVAV 125
>sp|A5D2T8|RRF_PELTS Ribosome-recycling factor OS=Pelotomaculum thermopropionicum
(strain DSM 13744 / JCM 10971 / SI) GN=frr PE=3 SV=1
Length = 185
Score = 140 bits (352), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 62/122 (50%), Positives = 93/122 (76%)
Query: 98 KDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLL 157
K+ ++ M++TI++V+ F S+R GR+ PA+LDK+ V YYG+P + +A I+ P++ L+
Sbjct: 7 KEAESNMKKTIEVVKKEFASLRAGRATPALLDKVMVNYYGTPTPVNQLANISVPEARLLV 66
Query: 158 IQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKV 217
+QP+DK+ L IE+AI+ SDLG+TP +DG VIRL +PQLT ERR EL KV+ K+AEEG+V
Sbjct: 67 VQPWDKTVLPEIERAILKSDLGITPASDGNVIRLAIPQLTQERRAELMKVIKKKAEEGRV 126
Query: 218 VM 219
+
Sbjct: 127 AI 128
>sp|A4J5Z0|RRF_DESRM Ribosome-recycling factor OS=Desulfotomaculum reducens (strain
MI-1) GN=frr PE=3 SV=1
Length = 184
Score = 139 bits (349), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 61/116 (52%), Positives = 90/116 (77%)
Query: 104 MERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDK 163
M++++D+VR F S+R GR+ P++LDK+ V YYG+P L +A I+ P++ L+IQP+DK
Sbjct: 13 MKKSVDVVRREFASLRAGRATPSILDKVTVSYYGTPTPLNQLANISVPEARVLVIQPWDK 72
Query: 164 SSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVVM 219
S + +EKAI+ SD+G+TP++DG VIRL +PQLT ERR EL KV+ K+AEEG+V +
Sbjct: 73 SVIPEVEKAILKSDVGITPSSDGTVIRLIIPQLTQERRTELVKVIKKKAEEGRVAV 128
>sp|Q185S5|RRF_CLOD6 Ribosome-recycling factor OS=Clostridium difficile (strain 630)
GN=frr PE=3 SV=1
Length = 185
Score = 138 bits (348), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 65/125 (52%), Positives = 89/125 (71%)
Query: 93 KSSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPD 152
K I K ++ +M TID ++ F ++R GR+N MLDKI V+YYG+P + I I+ P+
Sbjct: 2 KLEIHKQLEEKMNGTIDALKFEFGTIRAGRANAQMLDKIRVDYYGTPTPINQIGAISVPE 61
Query: 153 SSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQA 212
L+I P+DKS++ IEKAI +SDLG+ P+NDGEVIRL++P LT ERRKEL+K +K A
Sbjct: 62 PRILMISPWDKSAMHEIEKAIANSDLGLNPSNDGEVIRLSVPALTEERRKELAKKASKAA 121
Query: 213 EEGKV 217
EE KV
Sbjct: 122 EEFKV 126
>sp|A5CQS7|RRF_CLAM3 Ribosome-recycling factor OS=Clavibacter michiganensis subsp.
michiganensis (strain NCPPB 382) GN=frr PE=3 SV=1
Length = 185
Score = 137 bits (346), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 62/120 (51%), Positives = 90/120 (75%), Gaps = 1/120 (0%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
D + RM + ++ V+ +F SVRTGR+NPA+ K+ VEYYGSP L +A +N P++ +L++
Sbjct: 9 DARDRMGKAVEAVKEDFGSVRTGRANPALFQKVMVEYYGSPTPLGQLASMNNPEARTLIV 68
Query: 159 QPYDKSSLKSIEKAIVS-SDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKV 217
PYDK++LK IEKA+V+ +L T NDGE++RLTLP+LT +RRKE K+V +AEEG+V
Sbjct: 69 TPYDKTALKEIEKALVNVPNLSATVGNDGEMVRLTLPELTEDRRKEFVKIVRGKAEEGRV 128
>sp|B0REP7|RRF_CLAMS Ribosome-recycling factor OS=Clavibacter michiganensis subsp.
sepedonicus (strain ATCC 33113 / JCM 9667) GN=frr PE=3
SV=1
Length = 185
Score = 136 bits (343), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 61/120 (50%), Positives = 89/120 (74%), Gaps = 1/120 (0%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
D + RM + ++ V+ +F SVRTGR+NPA+ K+ VEYYGSP L +A +N P++ +L++
Sbjct: 9 DARDRMGKAVEAVKEDFGSVRTGRANPALFQKVMVEYYGSPTPLGQLASMNNPEARTLIV 68
Query: 159 QPYDKSSLKSIEKAIVS-SDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKV 217
PYDK++LK IEKA+V+ +L T NDGE++R TLP+LT +RRKE K+V +AEEG+V
Sbjct: 69 TPYDKTALKEIEKALVNVPNLSATVGNDGEMVRFTLPELTEDRRKEFVKIVRGKAEEGRV 128
>sp|Q1AW65|RRF_RUBXD Ribosome-recycling factor OS=Rubrobacter xylanophilus (strain DSM
9941 / NBRC 16129) GN=frr PE=3 SV=1
Length = 186
Score = 135 bits (341), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 62/119 (52%), Positives = 88/119 (73%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
D + RM+ ++ VR F ++RTGR+NPA+LD+IEVE YG+ + +KS+A I P+ L I
Sbjct: 9 DAERRMKGALEAVRHQFATIRTGRANPALLDRIEVEAYGTRMPIKSVASIGAPEPRLLTI 68
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKV 217
PYD + LK+IE+AI SDLG+ P NDG++IRL +P+LT ERR+EL ++V AEEG+V
Sbjct: 69 TPYDPNLLKTIERAIRDSDLGLNPQNDGKIIRLPIPELTEERRRELIRLVRHMAEEGRV 127
>sp|B2A383|RRF_NATTJ Ribosome-recycling factor OS=Natranaerobius thermophilus (strain
ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) GN=frr PE=3
SV=1
Length = 184
Score = 134 bits (338), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 61/126 (48%), Positives = 93/126 (73%)
Query: 94 SSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDS 153
SI KD + +M++ + +++ S+R GR+NP++L+ I V+YYG L +A I+ P+
Sbjct: 2 DSIFKDAEQKMKKALSSLKSELASLRAGRANPSILEGINVDYYGMATPLNQLANISAPEP 61
Query: 154 SSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAE 213
L++QPYDKS+++ IEKAI+ SD+G+TPNNDG+VIRL +PQLT ERR EL K+V ++ E
Sbjct: 62 RLLVVQPYDKSAIEDIEKAILKSDVGLTPNNDGQVIRLAVPQLTEERRNELVKIVRQKGE 121
Query: 214 EGKVVM 219
+ KVV+
Sbjct: 122 DTKVVV 127
>sp|Q97I63|RRF_CLOAB Ribosome-recycling factor OS=Clostridium acetobutylicum (strain
ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787)
GN=frr PE=3 SV=1
Length = 185
Score = 134 bits (337), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 62/126 (49%), Positives = 92/126 (73%)
Query: 94 SSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDS 153
S I K+++ +M ++I ++ S++ GR+NPAMLD+IEV+YYG+ L +A I+ P+S
Sbjct: 3 SDIIKELEEKMTKSISALKKELTSMKAGRANPAMLDRIEVDYYGTMTPLNQLANISVPES 62
Query: 154 SSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAE 213
L+IQP+DKS++KSIEKAI+ SDLG+ P+NDG +RL +P+LT E RK + K V K E
Sbjct: 63 RVLMIQPWDKSAMKSIEKAILISDLGLNPSNDGTTMRLVIPELTEETRKNIVKNVKKAGE 122
Query: 214 EGKVVM 219
+GKV +
Sbjct: 123 DGKVAL 128
>sp|B2GKT3|RRF_KOCRD Ribosome-recycling factor OS=Kocuria rhizophila (strain ATCC 9341 /
DSM 348 / NBRC 103217 / DC2201) GN=frr PE=3 SV=1
Length = 185
Score = 134 bits (336), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 59/124 (47%), Positives = 86/124 (69%)
Query: 94 SSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDS 153
S + D RM + +D +T+F++VRTGR+NPA+ + V YYG+P L+ +A TP++
Sbjct: 3 SDVLSDATTRMGKAVDAAKTDFSTVRTGRANPALFSSLLVAYYGTPTPLQQLASFQTPEA 62
Query: 154 SSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAE 213
+LLI PYD+S+L IEKA+ SD+G P NDG VIR+ +P+LT ERRKE K+V +AE
Sbjct: 63 RTLLITPYDRSALNDIEKALRDSDIGANPANDGNVIRVVMPELTEERRKEYVKIVHGKAE 122
Query: 214 EGKV 217
+ +V
Sbjct: 123 DARV 126
>sp|Q6A7K0|RRF_PROAC Ribosome-recycling factor OS=Propionibacterium acnes (strain
KPA171202 / DSM 16379) GN=frr PE=3 SV=1
Length = 184
Score = 134 bits (336), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 60/126 (47%), Positives = 86/126 (68%)
Query: 94 SSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDS 153
S I KD + +M +D R F ++RTGR+NPAM +K+ VEYYG+P L+ +A P++
Sbjct: 2 SDIIKDAEKKMGSAVDHAREEFAAIRTGRANPAMFNKLMVEYYGTPTPLQQLASFQVPEA 61
Query: 154 SSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAE 213
++LI P+DKS + +EKAI SDLG+ P+NDG V+R LP LT ERRKE K+ +AE
Sbjct: 62 RTVLIAPFDKSCVNDVEKAIRDSDLGVNPSNDGNVVRCVLPALTEERRKEYIKMAKTKAE 121
Query: 214 EGKVVM 219
EG++ +
Sbjct: 122 EGRIAV 127
>sp|Q9KA66|RRF_BACHD Ribosome-recycling factor OS=Bacillus halodurans (strain ATCC
BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125)
GN=frr PE=3 SV=3
Length = 185
Score = 134 bits (336), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 62/121 (51%), Positives = 87/121 (71%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
D + RM + + + +R GR+NPAMLD+I VEYYG+ L +A I+ P++ L+I
Sbjct: 8 DAEQRMTKATEALGRELAKLRAGRANPAMLDRITVEYYGAETPLNQLATISVPEARLLVI 67
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVV 218
QP+DKSS+ IE+AI SDLG+TP+NDG VIR+T+P LT ERR++L+K+V K AEE KV
Sbjct: 68 QPFDKSSISDIERAIQKSDLGLTPSNDGTVIRITIPPLTEERRRDLTKLVKKSAEEAKVA 127
Query: 219 M 219
+
Sbjct: 128 V 128
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.127 0.347
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,643,432
Number of Sequences: 539616
Number of extensions: 2554696
Number of successful extensions: 9655
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 759
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 8860
Number of HSP's gapped (non-prelim): 793
length of query: 226
length of database: 191,569,459
effective HSP length: 113
effective length of query: 113
effective length of database: 130,592,851
effective search space: 14756992163
effective search space used: 14756992163
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.3 bits)