Query 027212
Match_columns 226
No_of_seqs 150 out of 1101
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 10:35:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027212.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027212hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1dd5_A Ribosome recycling fact 100.0 3.1E-47 1.1E-51 324.4 15.1 131 94-224 3-133 (185)
2 1ise_A Ribosome recycling fact 100.0 3.1E-47 1.1E-51 324.4 14.7 131 94-224 3-133 (185)
3 1wqg_A Ribosome recycling fact 100.0 3.3E-47 1.1E-51 324.2 14.8 131 94-224 3-133 (185)
4 1is1_A Ribosome recycling fact 100.0 3.2E-47 1.1E-51 324.3 14.6 131 94-224 3-133 (185)
5 4gfq_A Ribosome-recycling fact 100.0 3.7E-47 1.3E-51 329.0 13.7 131 94-224 27-157 (209)
6 1eh1_A Ribosome recycling fact 100.0 3.2E-47 1.1E-51 324.3 12.7 131 94-224 4-134 (185)
7 1ge9_A Ribosome recycling fact 100.0 2.1E-46 7.1E-51 319.1 13.6 130 94-224 6-135 (184)
8 1wih_A Mitochondrial ribosome 100.0 1.6E-34 5.4E-39 218.5 3.4 82 121-202 1-83 (84)
9 3lf9_A 4E10_D0_1IS1A_001_C (T1 99.1 2.3E-10 7.8E-15 91.2 8.1 59 94-224 3-61 (121)
10 3lhp_S 4E10_D0_1ISEA_004_N (T9 98.8 1.1E-09 3.7E-14 87.7 0.4 38 185-224 34-71 (123)
11 4hhu_A OR280; engineered prote 87.6 3.3 0.00011 33.3 8.7 93 99-217 53-152 (170)
12 2fqm_A Phosphoprotein, P prote 72.1 5.2 0.00018 28.9 4.3 32 185-216 16-48 (75)
13 2kl8_A OR15; structural genomi 67.4 5.6 0.00019 28.7 3.7 55 163-217 9-70 (85)
14 4hhu_A OR280; engineered prote 59.4 8.3 0.00028 31.0 3.7 61 157-217 4-71 (170)
15 1l6x_B Minimized B-domain of p 54.8 6.9 0.00024 24.5 2.0 20 191-210 13-32 (34)
16 3t98_A Nuclear pore complex pr 45.2 44 0.0015 22.5 4.9 39 81-119 11-49 (51)
17 3m20_A 4-oxalocrotonate tautom 44.8 39 0.0013 22.1 4.8 27 188-214 2-28 (62)
18 2jhe_A Transcription regulator 38.4 73 0.0025 23.8 6.1 58 155-213 2-63 (190)
19 1use_A VAsp, vasodilator-stimu 36.5 81 0.0028 20.7 5.1 33 85-117 5-41 (45)
20 1usp_A Organic hydroperoxide r 35.0 37 0.0012 25.8 3.8 28 188-215 97-124 (139)
21 1zda_A Mini protein A domain, 32.8 9.9 0.00034 24.3 0.1 19 191-209 18-36 (38)
22 1in0_A YAJQ protein, HI1034; a 32.6 12 0.00041 30.9 0.7 93 101-209 55-148 (163)
23 2bjo_A Organic hydroperoxide r 31.3 45 0.0015 25.2 3.8 26 188-213 95-120 (136)
24 1qwi_A OSMC, osmotically induc 31.2 47 0.0016 25.4 3.9 26 188-213 101-126 (143)
25 1n2f_A Organic hydroperoxide r 30.8 46 0.0016 25.4 3.8 28 188-215 100-127 (142)
26 2ql8_A Putative redox protein; 29.7 40 0.0014 25.9 3.3 28 188-215 97-124 (143)
27 1zb9_A OHR, organic hydroperox 27.4 58 0.002 24.9 3.8 28 188-215 101-128 (143)
28 3m21_A Probable tautomerase HP 25.9 96 0.0033 20.3 4.3 27 188-214 2-32 (67)
29 1nye_A Osmotically inducible p 25.1 67 0.0023 25.4 3.9 26 188-213 120-145 (162)
30 3t7z_A Nucleolar protein NOP 5 24.9 43 0.0015 26.2 2.6 42 90-143 34-76 (119)
31 3ez1_A Aminotransferase MOCR f 24.8 3.2E+02 0.011 23.2 12.9 53 165-217 356-417 (423)
32 1ukk_A Osmotically inducible p 21.8 45 0.0015 25.6 2.1 25 188-212 99-123 (142)
33 3lb5_A HIT-like protein involv 20.9 2.1E+02 0.0073 22.3 6.1 41 178-218 55-101 (161)
34 3p0t_A Uncharacterized protein 20.8 1.6E+02 0.0054 22.0 5.1 41 178-218 32-78 (138)
35 3axj_B TRAX, translin associat 20.6 78 0.0027 27.9 3.7 28 198-225 45-72 (298)
36 2hbp_A Cytoskeleton assembly c 20.5 38 0.0013 24.1 1.4 33 184-216 34-66 (68)
37 3onj_A T-snare VTI1; helix, HA 20.1 89 0.003 22.9 3.4 30 193-222 24-53 (97)
No 1
>1dd5_A Ribosome recycling factor; three-helix bundle, beta-alpha-beta sandwich; 2.55A {Thermotoga maritima} SCOP: d.67.3.1 PDB: 1t1m_C
Probab=100.00 E-value=3.1e-47 Score=324.40 Aligned_cols=131 Identities=40% Similarity=0.712 Sum_probs=128.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhccCCCCcCCCceeEEEECCccccccceEEEecCCCcEEEEeecCcccHHHHHHHH
Q 027212 94 SSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAI 173 (226)
Q Consensus 94 d~il~~~~~kM~kaie~lk~el~kiRtGRa~P~lLd~I~Ve~yG~~~pL~~LAqIsvkd~rtLvI~pyD~s~ik~IekAI 173 (226)
++++++++++|++++++|+++|++||+||+||++||+|+|+|||+++||+|||+|+++++|+|+|+|||++++++|++||
T Consensus 3 ~~~~~~~~~~M~k~ie~lk~~l~~iRtGRa~p~lld~I~V~yyG~~~pL~qvA~Isv~~~r~l~I~p~D~~~i~~IekAI 82 (185)
T 1dd5_A 3 NPFIKEAKEKMKRTLEKIEDELRKMRTGKPSPAILEEIKVDYYGVPTPVNQLATISISEERTLVIKPWDKSVLSLIEKAI 82 (185)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHSCCSSCCGGGGTTCEEEETTEEEEGGGSEEEEECSTTEEEEEESSTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHhCCeEEEECCCcccHHHceeeecCCCCEEEEEecCHhHHHHHHHHH
Confidence 34689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCCCCccCCCCeEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 027212 174 VSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVVMLLLFT 224 (226)
Q Consensus 174 ~~SnLglnPq~DG~~IrV~IP~lT~E~RkeLvK~aKk~~E~aKv~IR~~~~ 224 (226)
++|||||||++||+.|||+||+||+|+|++|+|.||+++|+||++||++|.
T Consensus 83 ~~SdLglnP~~dG~~Iri~iP~lTeErRkelvK~~k~~~E~aKvaiRniRr 133 (185)
T 1dd5_A 83 NASDLGLNPINDGNVIRLVFPSPTTEQREKWVKKAKEIVEEGKIAIRNIRR 133 (185)
T ss_dssp HHSSSCCCCEECSSCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCCCCcccCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999874
No 2
>1ise_A Ribosome recycling factor; translation; 2.20A {Escherichia coli} SCOP: d.67.3.1 PDB: 1ek8_A* 1zn0_A 1zn1_A 2rdo_8
Probab=100.00 E-value=3.1e-47 Score=324.36 Aligned_cols=131 Identities=43% Similarity=0.745 Sum_probs=128.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhccCCCCcCCCceeEEEECCccccccceEEEecCCCcEEEEeecCcccHHHHHHHH
Q 027212 94 SSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAI 173 (226)
Q Consensus 94 d~il~~~~~kM~kaie~lk~el~kiRtGRa~P~lLd~I~Ve~yG~~~pL~~LAqIsvkd~rtLvI~pyD~s~ik~IekAI 173 (226)
++++.+++++|++++++|+++|++||+||+||++||+|+|+|||+++||+|||+|+++++|+|+|+|||++++++|++||
T Consensus 3 ~~~~~~~~~~M~k~ie~lk~~l~~iRtGRa~p~lld~I~V~yyG~~~pL~qvA~Isv~~~r~l~I~p~D~~~i~~IekAI 82 (185)
T 1ise_A 3 SDIRKDAEVRMDKCVEAFKTQISKIRTGRASPSLLDGIVVEYYGTPTPLRQLASVTVEDSRTLKINVFDRSMSPAVEKAI 82 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSCCSSCCGGGGTTCEEEETTEEEEGGGTEEEEEEETTEEEEEESSGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHhCCeEEEeCCCcccHHHceeeecCCCCEEEEeccCHhHHHHHHHHH
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCCCCccCCCCeEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 027212 174 VSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVVMLLLFT 224 (226)
Q Consensus 174 ~~SnLglnPq~DG~~IrV~IP~lT~E~RkeLvK~aKk~~E~aKv~IR~~~~ 224 (226)
++|||||||++||+.|||+||+||+|+|++|+|.||+++|+||++||++|.
T Consensus 83 ~~SdLglnP~~dG~~Iri~iP~lTeErRkelvK~~k~~~E~aKvaiRniRr 133 (185)
T 1ise_A 83 MASDLGLNPNSAGSDIRVPLPPLTEERRKDLTKIVRGEAEQARVAVRNVGR 133 (185)
T ss_dssp HTTCTTCCCEESSSEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCCCCcccCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999874
No 3
>1wqg_A Ribosome recycling factor; translation factor, triple-helix bundle, protein synthesis, translation; 2.15A {Mycobacterium tuberculosis} SCOP: d.67.3.1 PDB: 1wqf_A 1wqh_A
Probab=100.00 E-value=3.3e-47 Score=324.22 Aligned_cols=131 Identities=39% Similarity=0.741 Sum_probs=128.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhccCCCCcCCCceeEEEECCccccccceEEEecCCCcEEEEeecCcccHHHHHHHH
Q 027212 94 SSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAI 173 (226)
Q Consensus 94 d~il~~~~~kM~kaie~lk~el~kiRtGRa~P~lLd~I~Ve~yG~~~pL~~LAqIsvkd~rtLvI~pyD~s~ik~IekAI 173 (226)
++++.+++++|++++++|+++|++||+||+||++||+|+|+|||+++||+|||+|+++++|+|+|+|||++++++|++||
T Consensus 3 ~~~~~~~~~~M~kai~~lk~~l~~iRtGRa~p~lld~I~V~yyG~~~pL~qvA~Isv~~~r~l~I~p~D~~~i~~IekAI 82 (185)
T 1wqg_A 3 DEALFDAEEKMEKAVAVARDDLSTIRTGRANPGMFSRITIDYYGAATPITQLASINVPEARLVVIKPYEANQLRAIETAI 82 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSCCSSCCGGGGTTCEEEETTEEEEGGGSEEEEEEETTEEEEEESSGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHhCCeEEEeCCCcccHHHceeeecCCCCEEEEEeCCHhHHHHHHHHH
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCCCCccCCCCeEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 027212 174 VSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVVMLLLFT 224 (226)
Q Consensus 174 ~~SnLglnPq~DG~~IrV~IP~lT~E~RkeLvK~aKk~~E~aKv~IR~~~~ 224 (226)
++|||||||++||+.|||+||+||+|+|++|+|.||+++|+||++||++|.
T Consensus 83 ~~SdLglnP~~dG~~Iri~iP~lTeErRkelvK~~k~~~E~aKvaiRniRr 133 (185)
T 1wqg_A 83 RNSDLGVNPTNDGALIRVAVPQLTEERRRELVKQAKHKGEEAKVSVRNIRR 133 (185)
T ss_dssp HHSTTCCCCEECSSCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCCCCcccCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999874
No 4
>1is1_A Ribosome recycling factor; translation; 2.20A {Vibrio parahaemolyticus} SCOP: d.67.3.1 PDB: 3r8n_Y
Probab=100.00 E-value=3.2e-47 Score=324.27 Aligned_cols=131 Identities=40% Similarity=0.727 Sum_probs=128.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhccCCCCcCCCceeEEEECCccccccceEEEecCCCcEEEEeecCcccHHHHHHHH
Q 027212 94 SSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAI 173 (226)
Q Consensus 94 d~il~~~~~kM~kaie~lk~el~kiRtGRa~P~lLd~I~Ve~yG~~~pL~~LAqIsvkd~rtLvI~pyD~s~ik~IekAI 173 (226)
++++.+++++|++++++|+++|++||+||+||++||+|+|+|||+++||+|||+|+++++|+|+|+|||++++++|++||
T Consensus 3 ~~~~~~~~~~M~kaie~lk~~l~~iRtGRa~p~lld~I~V~yyG~~~pL~qvA~Isv~~~r~l~I~p~D~~~i~~IekAI 82 (185)
T 1is1_A 3 NEIKKDAQERMDKSVEALKNNLSKVRTGRAHPSLLSGISVEYYGAATPLNQVANVVAEDARTLAITVFDKELTQKVEKAI 82 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSCCSSCCGGGGTTCEEEETTEEEEGGGTEEEEEEETTEEEEEESSTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHhCCeEEEeCCCCccHHHceeeecCCCCEEEEEecCHhHHHHHHHHH
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCCCCccCCCCeEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 027212 174 VSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVVMLLLFT 224 (226)
Q Consensus 174 ~~SnLglnPq~DG~~IrV~IP~lT~E~RkeLvK~aKk~~E~aKv~IR~~~~ 224 (226)
++|||||||++||+.|||+||+||+|+|++|+|.||+++|+||++||++|.
T Consensus 83 ~~SdLglnP~~dG~~Iri~iP~lTeErRkelvK~~k~~~E~aKvaiRniRr 133 (185)
T 1is1_A 83 MMSDLGLNPMSAGTIIRVPLPPLTEERRKDLVKIVRGEAEGGRVAVRNIRR 133 (185)
T ss_dssp HHTTSSCCCEEETTEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCCCCcccCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999874
No 5
>4gfq_A Ribosome-recycling factor; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.65A {Bacillus anthracis}
Probab=100.00 E-value=3.7e-47 Score=328.98 Aligned_cols=131 Identities=44% Similarity=0.754 Sum_probs=128.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhccCCCCcCCCceeEEEECCccccccceEEEecCCCcEEEEeecCcccHHHHHHHH
Q 027212 94 SSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAI 173 (226)
Q Consensus 94 d~il~~~~~kM~kaie~lk~el~kiRtGRa~P~lLd~I~Ve~yG~~~pL~~LAqIsvkd~rtLvI~pyD~s~ik~IekAI 173 (226)
.+++++++++|++++++|+++|++||+|||||++||+|+|+|||+++||+|||+|+++++++|+|+|||++++++|++||
T Consensus 27 ~~il~~a~ekM~kaie~lk~el~~iRtGRA~p~lLd~I~VdyYG~~tPL~qvA~Isvpe~rtl~I~p~D~s~i~~IekAI 106 (209)
T 4gfq_A 27 QQVLKFSNEKMEKAVAAYSRELATVRAGRASASVLDKVQVDYYGAPTPVVQLANITVPEARLLVIQPYDKTSIGDIEKAI 106 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCCSBSCCGGGGTTCEEESSSCEEEGGGGEEEEEEETTEEEEEESSGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHhCCeEEeeCCCccchhhhheeecCCCCEEEEecCcHhhHHHHHHHH
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCCCCccCCCCeEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 027212 174 VSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVVMLLLFT 224 (226)
Q Consensus 174 ~~SnLglnPq~DG~~IrV~IP~lT~E~RkeLvK~aKk~~E~aKv~IR~~~~ 224 (226)
++|||||||++||+.|||+||+||+|+|++|+|.||+++|+||++||++|.
T Consensus 107 ~~S~LglnP~~dG~~Iri~iP~LTeErRkelvK~ak~~~E~aKvaIRniRr 157 (209)
T 4gfq_A 107 LKADLGLNPSNDGTVIRIAFPALTEERRRDLVKVVKKYAEEAKVAVRNVRR 157 (209)
T ss_dssp HHHTSSCCCEECSSCEEEECCBCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCCCCCCcCCCceeeeCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999874
No 6
>1eh1_A Ribosome recycling factor; translation, hinge variability; 2.60A {Thermus thermophilus} SCOP: d.67.3.1 PDB: 2qbe_6 2qbg_6 2qbi_6* 2qbk_6* 2v46_Y* 2v48_Y* 2z4l_6* 2z4n_6* 3j0d_J 3j0e_G
Probab=100.00 E-value=3.2e-47 Score=324.28 Aligned_cols=131 Identities=40% Similarity=0.754 Sum_probs=128.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhccCCCCcCCCceeEEEECCccccccceEEEecCCCcEEEEeecCcccHHHHHHHH
Q 027212 94 SSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAI 173 (226)
Q Consensus 94 d~il~~~~~kM~kaie~lk~el~kiRtGRa~P~lLd~I~Ve~yG~~~pL~~LAqIsvkd~rtLvI~pyD~s~ik~IekAI 173 (226)
++++++++++|++++++|+++|++||+||+||++||+|+|+|||+++||+|||+|+++++|+|+|+|||++++++|++||
T Consensus 4 ~~~~~~~~~~M~kaie~lk~~l~~iRtGRa~p~lld~I~V~yyG~~~pL~qvA~Isv~~~r~l~I~p~D~~~i~~IekAI 83 (185)
T 1eh1_A 4 KELYAETRSHMQKSLEVLEHNLAGLRTGRANPALLLHLKVEYYGAHVPLNQIATVTAPDPRTLVVQSWDQNALKAIEKAI 83 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSCCSSCCSGGGTSCEEEETTEEEEGGGTCEEECSSTTEEEEECSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHhCCeEEEeCCCCccHHHceeeecCCCCEEEEecCCHhHHHHHHHHH
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCCCCccCCCCeEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 027212 174 VSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVVMLLLFT 224 (226)
Q Consensus 174 ~~SnLglnPq~DG~~IrV~IP~lT~E~RkeLvK~aKk~~E~aKv~IR~~~~ 224 (226)
++|||||||++||+.|||+||+||+|+|++|+|.||+++|+||++||++|.
T Consensus 84 ~~SdLglnP~~dG~~Iri~iP~lTeErRkelvK~~k~~~E~aKvaiRniRr 134 (185)
T 1eh1_A 84 RDSDLGLNPSNKGDALYINIPPLTEERRKDLVRAVRQYAEEGRVAIRNIRR 134 (185)
T ss_dssp SSSTTCCCEEEETTEEEEECCCCCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCCCCcccCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999974
No 7
>1ge9_A Ribosome recycling factor; three-helix bundle; NMR {Aquifex aeolicus} SCOP: d.67.3.1
Probab=100.00 E-value=2.1e-46 Score=319.06 Aligned_cols=130 Identities=35% Similarity=0.650 Sum_probs=127.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhccCCCCcCCCceeEEEECCccccccceEEEecCCCcEEEEeecCcccHHHHHHHH
Q 027212 94 SSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAI 173 (226)
Q Consensus 94 d~il~~~~~kM~kaie~lk~el~kiRtGRa~P~lLd~I~Ve~yG~~~pL~~LAqIsvkd~rtLvI~pyD~s~ik~IekAI 173 (226)
++++++++++|++++++|+++|+++|+||+||++||+|+|+|||+++||+|||+|+++|+|+|+|+|||++++++|++||
T Consensus 6 ~~~~~~~~~~M~kaie~lk~~l~~iRtGRa~p~lld~I~V~yyG~~tpL~qvA~Isv~~~r~l~I~p~D~~~i~~IekAI 85 (184)
T 1ge9_A 6 EDIFKEAEKDMKKAVEYYKNEIAGLRTSRASTALVEEIKVEYYGSKVPIKQLGTISVPEHNQIVIQVWDQNAVPAIEKAI 85 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCCSSCCTTTCSCCCEESSSCEECTTTTCEEECSSSSEEEEECSSSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHhCCeEEEECCCCccHHHceeeecCCCCEEEEEecCHHHHHHHHHHH
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCCCCccCCCCeEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 027212 174 VSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVVMLLLFT 224 (226)
Q Consensus 174 ~~SnLglnPq~DG~~IrV~IP~lT~E~RkeLvK~aKk~~E~aKv~IR~~~~ 224 (226)
++ ||||||++||+.|||+||+||+|+|++|+|.||+++|+||++||++|.
T Consensus 86 ~~-dLglnP~~dG~~Iri~iP~lTeErRkelvK~~k~~~E~aKvaiRniRr 135 (184)
T 1ge9_A 86 RE-ELNLNPTVQGNVIRVTLPPLTEERRRELVRLLHKITEEARVRVRNVRR 135 (184)
T ss_dssp HH-HHCSCCEEETTEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred Hh-CCCCCcccCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99 999999999999999999999999999999999999999999999874
No 8
>1wih_A Mitochondrial ribosome recycling factor; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.67.3.1
Probab=100.00 E-value=1.6e-34 Score=218.53 Aligned_cols=82 Identities=28% Similarity=0.413 Sum_probs=80.9
Q ss_pred CCCCcCCCceeEEEECCccccccceEEEecCCCcEEEEeecC-cccHHHHHHHHHhCCCCCCccCCCCeEEEeCCCCCHH
Q 027212 121 GRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYD-KSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSE 199 (226)
Q Consensus 121 GRa~P~lLd~I~Ve~yG~~~pL~~LAqIsvkd~rtLvI~pyD-~s~ik~IekAI~~SnLglnPq~DG~~IrV~IP~lT~E 199 (226)
|||||++||+|+|+|||+++||+|||+|+++|+|+|+|+||| ++++++|+|||++|||||||++||+.|||+||+||+|
T Consensus 1 GRa~p~lld~I~V~yyG~~~pL~qvA~isv~~~r~l~I~p~D~~~~~~~IekAI~~S~LglnP~~dG~~Iri~iP~lTeE 80 (84)
T 1wih_A 1 GSSGSSGLDHITVVTADGKVALNQIGQISMKSPQVILVNMASFPECTAAAIKAIRESGMNLNPEVEGTLIRVPIPKVTSG 80 (84)
T ss_dssp CCSSSCTTSSCEEEETTEEEEHHHHSEEEEEETTEEEEECTTCTTSHHHHHHHHHTTTCCCCCEEETTEEEEECCCSSCS
T ss_pred CCCChHHhCCEEEEECCCCccHHHceEEEcCCCCEEEEEecccHHHHHHHHHHHHHCCCCCCcccCCCEEEEeCCCCChh
Confidence 899999999999999999999999999999999999999988 8999999999999999999999999999999999999
Q ss_pred HHH
Q 027212 200 RRK 202 (226)
Q Consensus 200 ~Rk 202 (226)
+|+
T Consensus 81 rR~ 83 (84)
T 1wih_A 81 PSS 83 (84)
T ss_dssp SCC
T ss_pred ccC
Confidence 996
No 9
>3lf9_A 4E10_D0_1IS1A_001_C (T161); epitope-scaffold, immune system; 2.00A {Artificial gene}
Probab=99.09 E-value=2.3e-10 Score=91.24 Aligned_cols=59 Identities=37% Similarity=0.613 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhccCCCCcCCCceeEEEECCccccccceEEEecCCCcEEEEeecCcccHHHHHHHH
Q 027212 94 SSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAI 173 (226)
Q Consensus 94 d~il~~~~~kM~kaie~lk~el~kiRtGRa~P~lLd~I~Ve~yG~~~pL~~LAqIsvkd~rtLvI~pyD~s~ik~IekAI 173 (226)
++|-++++.+|+++++.|+.+++++|+||
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------------------------- 31 (121)
T 3lf9_A 3 NEIKKDAQERMDKSVEALKNNLSKVRTGG--------------------------------------------------- 31 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCCSS---------------------------------------------------
T ss_pred hHHHhhHHHHHHHHHHHHHHhhHhhcCCC---------------------------------------------------
Confidence 56778999999999999999999999986
Q ss_pred HhCCCCCCccCCCCeEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 027212 174 VSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVVMLLLFT 224 (226)
Q Consensus 174 ~~SnLglnPq~DG~~IrV~IP~lT~E~RkeLvK~aKk~~E~aKv~IR~~~~ 224 (226)
+||+|+|++|+|+|++++|+||++||++|.
T Consensus 32 ---------------------plTEERRKeLVK~akk~aEeaKVAIRNIRR 61 (121)
T 3lf9_A 32 ---------------------GGTEERRKDLVKIVRGEAEGGRVAVRNIAR 61 (121)
T ss_dssp ---------------------BCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---------------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 689999999999999999999999999874
No 10
>3lhp_S 4E10_D0_1ISEA_004_N (T93); epitope-scaffold, immune system; 2.70A {Artificial gene} PDB: 1y69_8
Probab=98.75 E-value=1.1e-09 Score=87.71 Aligned_cols=38 Identities=29% Similarity=0.338 Sum_probs=35.5
Q ss_pred CCCeEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 027212 185 DGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVVMLLLFT 224 (226)
Q Consensus 185 DG~~IrV~IP~lT~E~RkeLvK~aKk~~E~aKv~IR~~~~ 224 (226)
++++|||+|| |+|+|++|+|+|++++|+||++||++|.
T Consensus 34 ~~~~IRl~iP--TEERRkeLvK~akk~aEeaKVaIRNIRR 71 (123)
T 3lhp_S 34 FKAAVRKVFP--TEERIKDWLKIVRGEAEQARVAVRNVGR 71 (123)
T ss_dssp HHHHHTTSCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCeEEeeCC--CHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 4568999999 9999999999999999999999999874
No 11
>4hhu_A OR280; engineered protein, PSI-biology, structural genomi unknown function; HET: AE4 PG4; 2.00A {Synthetic construct}
Probab=87.60 E-value=3.3 Score=33.31 Aligned_cols=93 Identities=22% Similarity=0.407 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhccCCCCcCCCceeEEEECCccccccceEEEecCCCcEEEEeecCcccHHHHHHHHHhC--
Q 027212 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSS-- 176 (226)
Q Consensus 99 ~~~~kM~kaie~lk~el~kiRtGRa~P~lLd~I~Ve~yG~~~pL~~LAqIsvkd~rtLvI~pyD~s~ik~IekAI~~S-- 176 (226)
+++.++.+--++|+.+|+ |.|.|. |- .++.-+.+-.|.-+.+.+.+||+..-
T Consensus 53 qvrkelakeaerl~~efn--------------i~v~y~-----------im-gsgsgvm~i~f~gddlea~ekalkemir 106 (170)
T 4hhu_A 53 QVRKELAKEAERLKAEFN--------------INVQYQ-----------IM-GSGSGVMVIVFEGDDLEALEKALKEMIR 106 (170)
T ss_dssp HHHHHHHHHHHHHHHHHT--------------CEEEEE-----------EE-CTTCCEEEEEEECSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcc--------------eEEEEE-----------EE-eCCceEEEEEEecCcHHHHHHHHHHHHH
Confidence 455667777788888884 566652 21 22334566678888899999988651
Q ss_pred ---CC--CCCccCCCCeEEEeCCCCCHHHHHHHHHHHHHHHHHHHH
Q 027212 177 ---DL--GMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKV 217 (226)
Q Consensus 177 ---nL--glnPq~DG~~IrV~IP~lT~E~RkeLvK~aKk~~E~aKv 217 (226)
.+ .++-..||+.+-|.|--+.+..|++|+|.|..+..+.-+
T Consensus 107 qarkfagtvtytl~gn~l~i~itgvpeqvrkelakeaerl~~efni 152 (170)
T 4hhu_A 107 QARKFAGTVTYTLSGNRLVIVITGVPEQVRKELAKEAERLKAEFNI 152 (170)
T ss_dssp HHHHTTCEEEEEECSSEEEEEEESCCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHhhcceEEEEEeCCEEEEEEeCCcHHHHHHHHHHHHHHHHhcce
Confidence 22 223346999999999999999999999999988776644
No 12
>2fqm_A Phosphoprotein, P protein; negative strand RNA virus, polymerase, replication, cofactor, viral protein; 2.30A {Vesicular stomatitis indiana virus} SCOP: d.378.1.1
Probab=72.07 E-value=5.2 Score=28.93 Aligned_cols=32 Identities=28% Similarity=0.556 Sum_probs=29.6
Q ss_pred CCCeEEEeCCC-CCHHHHHHHHHHHHHHHHHHH
Q 027212 185 DGEVIRLTLPQ-LTSERRKELSKVVAKQAEEGK 216 (226)
Q Consensus 185 DG~~IrV~IP~-lT~E~RkeLvK~aKk~~E~aK 216 (226)
.|+.+++.+|. +|.|.+.+-.|-++..+|-||
T Consensus 16 ~~KsL~Lf~P~gLt~~Q~~QW~~TIeav~qSak 48 (75)
T 2fqm_A 16 HGKTLRLTLPEGLSGEQKSQWMLTIKAVVQSAK 48 (75)
T ss_dssp TEEEEEEECCSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCceEEEeCCCCccHHHHHHHHHHHHHHHhhhc
Confidence 56799999997 999999999999999999987
No 13
>2kl8_A OR15; structural genomics, PSI-2, protein structure initiative, de novo protein, ferrodoxin fold; NMR {Artificial gene}
Probab=67.45 E-value=5.6 Score=28.72 Aligned_cols=55 Identities=27% Similarity=0.427 Sum_probs=40.1
Q ss_pred cccHHHHHHHHHh----C-CC-C-CCccCCCCeEEEeCCCCCHHHHHHHHHHHHHHHHHHHH
Q 027212 163 KSSLKSIEKAIVS----S-DL-G-MTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKV 217 (226)
Q Consensus 163 ~s~ik~IekAI~~----S-nL-g-lnPq~DG~~IrV~IP~lT~E~RkeLvK~aKk~~E~aKv 217 (226)
-+.+.+.+||+.. + .+ | ++-..||+.+.|.|--+.+..|++|+|.|..++.+.-+
T Consensus 9 gddleafekalkemirqarkfagtvtytldgndleiritgvpeqvrkelakeaerlakefni 70 (85)
T 2kl8_A 9 GDDLEAFEKALKEMIRQARKFAGTVTYTLDGNDLEIRITGVPEQVRKELAKEAERLAKEFNI 70 (85)
T ss_dssp CSSHHHHHHHHHHHHHHHTTTTCEEEEEECSSCEEEEEESCCHHHHHHHHHHHHHHHHHTCC
T ss_pred CCcHHHHHHHHHHHHHHHHhhcceEEEEecCCeeEEEEecChHHHHHHHHHHHHHHHHhcCe
Confidence 3456666666643 2 23 2 23346999999999999999999999999998877644
No 14
>4hhu_A OR280; engineered protein, PSI-biology, structural genomi unknown function; HET: AE4 PG4; 2.00A {Synthetic construct}
Probab=59.37 E-value=8.3 Score=30.97 Aligned_cols=61 Identities=20% Similarity=0.342 Sum_probs=46.0
Q ss_pred EEeecCcccHHHHHHHHHhC-----CC--CCCccCCCCeEEEeCCCCCHHHHHHHHHHHHHHHHHHHH
Q 027212 157 LIQPYDKSSLKSIEKAIVSS-----DL--GMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKV 217 (226)
Q Consensus 157 vI~pyD~s~ik~IekAI~~S-----nL--glnPq~DG~~IrV~IP~lT~E~RkeLvK~aKk~~E~aKv 217 (226)
.+-.|.-+.+.+.+||+..- .+ .++-..||+.+-|.|--+.+..|++|+|.|..+..+.-+
T Consensus 4 m~i~f~gddlea~ekalkemirqarkfagtvtytl~gn~l~i~itgvpeqvrkelakeaerl~~efni 71 (170)
T 4hhu_A 4 MVIVFEGDDLEALEKALKEMIRQARKFAGTVTYTLSGNRLVIVITGVPEQVRKELAKEAERLKAEFNI 71 (170)
T ss_dssp EEEEEECSCHHHHHHHHHHHHHHHHHTTCEEEEEEETTEEEEEEESCCHHHHHHHHHHHHHHHHHHTC
T ss_pred EEEEEecCcHHHHHHHHHHHHHHHHhhcceEEEEEeCCEEEEEEeCCcHHHHHHHHHHHHHHHHhcce
Confidence 34567777888888887651 22 223346899999999999999999999999888766543
No 15
>1l6x_B Minimized B-domain of protein A Z34C; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: k.13.1.1 PDB: 1oqo_C* 1oqx_C* 1zdc_A 1zdd_A
Probab=54.84 E-value=6.9 Score=24.46 Aligned_cols=20 Identities=30% Similarity=0.411 Sum_probs=17.6
Q ss_pred EeCCCCCHHHHHHHHHHHHH
Q 027212 191 LTLPQLTSERRKELSKVVAK 210 (226)
Q Consensus 191 V~IP~lT~E~RkeLvK~aKk 210 (226)
+.+|-+|+|.|..-++.+|.
T Consensus 13 Lh~~nLtEeQrn~yI~slkd 32 (34)
T 1l6x_B 13 LHDPNLNEEQRNAKIKSIRD 32 (34)
T ss_dssp HHCTTCCHHHHHHHHHHHHH
T ss_pred HcCCCCCHHHHHhHHHHHhc
Confidence 45799999999999999886
No 16
>3t98_A Nuclear pore complex protein NUP54; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus}
Probab=45.19 E-value=44 Score=22.48 Aligned_cols=39 Identities=8% Similarity=0.192 Sum_probs=32.3
Q ss_pred cccCchhhhHHhhHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 027212 81 VRCATIEEIEAEKSSIEKDVKARMERTIDMVRTNFNSVR 119 (226)
Q Consensus 81 v~~~~~eei~~e~d~il~~~~~kM~kaie~lk~el~kiR 119 (226)
-+....++..+|+-.++...++.|...++.+++++.-+.
T Consensus 11 ~~y~lD~~~~~eik~~L~~QQ~g~~~Li~ivk~DleDL~ 49 (51)
T 3t98_A 11 EKYYIDADLLREIKQHLKQQQEGLSHLISIIKDDLEDIK 49 (51)
T ss_dssp --CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhh
Confidence 345677888889999999999999999999999987653
No 17
>3m20_A 4-oxalocrotonate tautomerase, putative; DMPI, thermophIle, beta-alpha-beta, catalytic proline, isomerase; 2.37A {Archaeoglobus fulgidus}
Probab=44.83 E-value=39 Score=22.10 Aligned_cols=27 Identities=22% Similarity=0.366 Sum_probs=22.7
Q ss_pred eEEEeCCCCCHHHHHHHHHHHHHHHHH
Q 027212 188 VIRLTLPQLTSERRKELSKVVAKQAEE 214 (226)
Q Consensus 188 ~IrV~IP~lT~E~RkeLvK~aKk~~E~ 214 (226)
.|.|.++..|.|.+++|++.+-+...+
T Consensus 2 ~I~I~~~grt~eqK~~L~~~it~~~~~ 28 (62)
T 3m20_A 2 VLIVYGPKLDVGKKREFVERLTSVAAE 28 (62)
T ss_dssp EEEEECSCCCHHHHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHH
Confidence 467778889999999999998876654
No 18
>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}
Probab=38.38 E-value=73 Score=23.85 Aligned_cols=58 Identities=17% Similarity=0.131 Sum_probs=47.2
Q ss_pred EEEEeecC-cccHHHHHHHHHhCCCCCCcc---CCCCeEEEeCCCCCHHHHHHHHHHHHHHHH
Q 027212 155 SLLIQPYD-KSSLKSIEKAIVSSDLGMTPN---NDGEVIRLTLPQLTSERRKELSKVVAKQAE 213 (226)
Q Consensus 155 tLvI~pyD-~s~ik~IekAI~~SnLglnPq---~DG~~IrV~IP~lT~E~RkeLvK~aKk~~E 213 (226)
.|.|..+| +.++..|...|...+.++.-. .+|. +.+.+|....+.-..|...++.+..
T Consensus 2 ~~~v~~~dr~g~l~~i~~~l~~~~~ni~~~~~~~~g~-i~~~~~~~~~~~~~~L~~~l~~i~~ 63 (190)
T 2jhe_A 2 RLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPIGR-IYLNFAELEFESFSSLMAEIRRIAG 63 (190)
T ss_dssp EEEEEECSCTTHHHHHHHHHHHTTCCEEEEEEETTTE-EEEEECCCCHHHHHHHHHHHHHSTT
T ss_pred EEEEEEecCCcHHHHHHHHHHHcCCCeEEEEEecCCE-EEEEEEeCCHHHHHHHHHHHHcCCC
Confidence 47788899 999999999999987766543 4554 9999999999998999888887653
No 19
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=36.53 E-value=81 Score=20.73 Aligned_cols=33 Identities=12% Similarity=0.328 Sum_probs=20.5
Q ss_pred chhhhHHhhHHHHHHHHHHHHH----HHHHHHHHhhh
Q 027212 85 TIEEIEAEKSSIEKDVKARMER----TIDMVRTNFNS 117 (226)
Q Consensus 85 ~~eei~~e~d~il~~~~~kM~k----aie~lk~el~k 117 (226)
+.+|.+.=+.+|+.+++.++++ +|+.++.+|++
T Consensus 5 ~~~dle~~KqEIL~E~RkElqK~K~EIIeAi~~El~~ 41 (45)
T 1use_A 5 DYSDLQRVKQELLEEVKKELQKVKEEIIEAFVQELRK 41 (45)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4456666556666666655544 57777777765
No 20
>1usp_A Organic hydroperoxide resistance protein; oxidoreductase, 2-Cys peroxidase; 1.9A {Deinococcus radiodurans} SCOP: d.227.1.1 PDB: 1usp_B
Probab=35.05 E-value=37 Score=25.79 Aligned_cols=28 Identities=14% Similarity=0.185 Sum_probs=22.9
Q ss_pred eEEEeCCCCCHHHHHHHHHHHHHHHHHH
Q 027212 188 VIRLTLPQLTSERRKELSKVVAKQAEEG 215 (226)
Q Consensus 188 ~IrV~IP~lT~E~RkeLvK~aKk~~E~a 215 (226)
.+.|.+|.+++|.++++++.|.+.|==+
T Consensus 97 ~~~v~~~~~~~e~~~~l~~~a~~~Cpvs 124 (139)
T 1usp_A 97 ELEGHFPGLSREQAEGLMHAAHEVCPYS 124 (139)
T ss_dssp EEEEECTTCCHHHHHHHHHHHHHHCHHH
T ss_pred EEEEEECCCCHHHHHHHHHHHHhhCchh
Confidence 4778888899999999999998766433
No 21
>1zda_A Mini protein A domain, Z38; IGG binding domain, protein A mimic; NMR {Synthetic construct} SCOP: k.13.1.1 PDB: 1zdb_A
Probab=32.77 E-value=9.9 Score=24.29 Aligned_cols=19 Identities=32% Similarity=0.424 Sum_probs=16.8
Q ss_pred EeCCCCCHHHHHHHHHHHH
Q 027212 191 LTLPQLTSERRKELSKVVA 209 (226)
Q Consensus 191 V~IP~lT~E~RkeLvK~aK 209 (226)
+.+|-+|+|.|..-++.+|
T Consensus 18 Lh~~nLtEeQrn~yI~slk 36 (38)
T 1zda_A 18 LHDPNLNEEQRNAKIKSIR 36 (38)
T ss_dssp HSCSSSCTTHHHHHHHHHS
T ss_pred HcCCCCCHHHHHhHHHHhh
Confidence 5789999999999998876
No 22
>1in0_A YAJQ protein, HI1034; alpha and beta sandwich, structural genomics, structure 2 function project, S2F, unknown function; 2.14A {Haemophilus influenzae} SCOP: d.58.49.1 d.58.49.1
Probab=32.64 E-value=12 Score=30.92 Aligned_cols=93 Identities=17% Similarity=0.203 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHHHhhhhccCCCCcCCCceeEEE-ECCccccccceEEEecCCCcEEEEeecCcccHHHHHHHHHhCCCC
Q 027212 101 KARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVE-YYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLG 179 (226)
Q Consensus 101 ~~kM~kaie~lk~el~kiRtGRa~P~lLd~I~Ve-~yG~~~pL~~LAqIsvkd~rtLvI~pyD~s~ik~IekAI~~SnLg 179 (226)
+-+++.+++-|...|.+= .+++..||-=.++ ..|..+. + .|.++.| -|....|.|.|.|.++.|-
T Consensus 55 d~kl~qv~DiL~~kl~KR---gid~k~ld~~~~~~~sG~~vr--q--~~~lk~G-------I~~e~AKkIvK~IKdsklK 120 (163)
T 1in0_A 55 DFQLEQLIEILIGSCIKR---GIEHSSLDIPAESEHHGKLYS--K--EIKLKQG-------IETEMAKKITKLVKDSKIK 120 (163)
T ss_dssp HHHHHHHHHHHHHHHHHT---TCCGGGEECCSSCEEETTEEE--E--EEEECCS-------CCHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHHc---CCCchhcccCCCccccCCEEE--E--EEEeecc-------cCHHHHHHHHHHHHhcCCc
Confidence 346667777777776542 1233444310111 1233222 1 1223333 4789999999999999999
Q ss_pred CCccCCCCeEEEeCCCCCHHHHHHHHHHHH
Q 027212 180 MTPNNDGEVIRLTLPQLTSERRKELSKVVA 209 (226)
Q Consensus 180 lnPq~DG~~IrV~IP~lT~E~RkeLvK~aK 209 (226)
++.+..|..|||.=- ..+--++.+..+|
T Consensus 121 Vqa~IQGd~vRVtgK--krDDLQ~viallk 148 (163)
T 1in0_A 121 VQTQIQGEQVRVTGK--SRDDLQAVIQLVK 148 (163)
T ss_dssp EEEEEETTEEEEEES--CHHHHHHHHHHHH
T ss_pred ceeEecCcEEEEecC--CHHHHHHHHHHHH
Confidence 999999999998632 2344444455444
No 23
>2bjo_A Organic hydroperoxide resistance protein OHRB; heat shock protein, oxidor; 2.10A {Bacillus subtilis}
Probab=31.26 E-value=45 Score=25.15 Aligned_cols=26 Identities=15% Similarity=0.239 Sum_probs=21.9
Q ss_pred eEEEeCCCCCHHHHHHHHHHHHHHHH
Q 027212 188 VIRLTLPQLTSERRKELSKVVAKQAE 213 (226)
Q Consensus 188 ~IrV~IP~lT~E~RkeLvK~aKk~~E 213 (226)
.+.|.+|.+++|..+++++.+.+.|=
T Consensus 95 ~~~v~~~~~~~e~~~~l~~~a~~~Cp 120 (136)
T 2bjo_A 95 TLVVNTKDLDREKAQELVNAAHEFCP 120 (136)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHCH
T ss_pred EEEEEeCCCCHHHHHHHHHHHHHhCc
Confidence 46778889999999999999987664
No 24
>1qwi_A OSMC, osmotically inducible protein; hydroperoxide resistance, hydroperoxide reductase; 1.80A {Escherichia coli} SCOP: d.227.1.1
Probab=31.21 E-value=47 Score=25.40 Aligned_cols=26 Identities=4% Similarity=0.095 Sum_probs=21.9
Q ss_pred eEEEeCCCCCHHHHHHHHHHHHHHHH
Q 027212 188 VIRLTLPQLTSERRKELSKVVAKQAE 213 (226)
Q Consensus 188 ~IrV~IP~lT~E~RkeLvK~aKk~~E 213 (226)
.++|.+|.+++|.++++++.+.+.|=
T Consensus 101 ~~~v~~~~~~~e~~~~l~~~a~~~Cp 126 (143)
T 1qwi_A 101 KSEVAVPGIDASTFDGIIQKAKAGCP 126 (143)
T ss_dssp EEEEECTTCCHHHHHHHHHHHHHHSH
T ss_pred EEEEEeCCCCHHHHHHHHHHHHccCc
Confidence 46778899999999999999987663
No 25
>1n2f_A Organic hydroperoxide resistance protein; peroxide reductase, oxidoreductase; 2.01A {Pseudomonas aeruginosa} SCOP: d.227.1.1
Probab=30.81 E-value=46 Score=25.42 Aligned_cols=28 Identities=14% Similarity=0.254 Sum_probs=23.0
Q ss_pred eEEEeCCCCCHHHHHHHHHHHHHHHHHH
Q 027212 188 VIRLTLPQLTSERRKELSKVVAKQAEEG 215 (226)
Q Consensus 188 ~IrV~IP~lT~E~RkeLvK~aKk~~E~a 215 (226)
.+.|.+|.+++|.+++++..+.+.|==+
T Consensus 100 ~~~v~~~~~~~e~~~~l~~~a~~~Cpvs 127 (142)
T 1n2f_A 100 ELHINLPGMEREAAEALVAAAHQVCPYS 127 (142)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHCHHH
T ss_pred EEEEEECCCCHHHHHHHHHHHHHhCcHh
Confidence 4778889999999999999998766433
No 26
>2ql8_A Putative redox protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, oxidoreductase; 1.50A {Lactobacillus casei}
Probab=29.71 E-value=40 Score=25.85 Aligned_cols=28 Identities=4% Similarity=0.127 Sum_probs=22.6
Q ss_pred eEEEeCCCCCHHHHHHHHHHHHHHHHHH
Q 027212 188 VIRLTLPQLTSERRKELSKVVAKQAEEG 215 (226)
Q Consensus 188 ~IrV~IP~lT~E~RkeLvK~aKk~~E~a 215 (226)
.+.|.+|.+++|.++++++.|.+.|==+
T Consensus 97 ~~~v~~~g~~~e~~~~l~~~a~~~CpVs 124 (143)
T 2ql8_A 97 HAQVMVKGVDFDTAKAFTNEIENRCPVS 124 (143)
T ss_dssp EEEEEETTSCHHHHHHHHHHHHHHCHHH
T ss_pred EEEEEECCCCHHHHHHHHHHHHhcCcHh
Confidence 4677888899999999999998766433
No 27
>1zb9_A OHR, organic hydroperoxide resistance protein; oxidoreductase; HET: PE4; 1.80A {Xylella fastidiosa} PDB: 1zb8_A*
Probab=27.38 E-value=58 Score=24.90 Aligned_cols=28 Identities=7% Similarity=0.126 Sum_probs=22.9
Q ss_pred eEEEeCCCCCHHHHHHHHHHHHHHHHHH
Q 027212 188 VIRLTLPQLTSERRKELSKVVAKQAEEG 215 (226)
Q Consensus 188 ~IrV~IP~lT~E~RkeLvK~aKk~~E~a 215 (226)
.+.|.+|.+++|..++++..+.+.|==+
T Consensus 101 ~~~v~~~~~~~e~~~~l~~~a~~~Cpvs 128 (143)
T 1zb9_A 101 ELRIAVSGMERSMLQTLVDKAHRVCPYS 128 (143)
T ss_dssp EEEEECTTCCHHHHHHHHHHHHHHCHHH
T ss_pred EEEEEECCCCHHHHHHHHHHHHhhCcHh
Confidence 5778888999999999999998866433
No 28
>3m21_A Probable tautomerase HP_0924; 4-oxalocrotonate tautomerase, catalytic proline, hexamer, BE beta, isomerase; 1.90A {Helicobacter pylori} PDB: 2orm_A
Probab=25.91 E-value=96 Score=20.35 Aligned_cols=27 Identities=22% Similarity=0.292 Sum_probs=21.8
Q ss_pred eEEEeCCC----CCHHHHHHHHHHHHHHHHH
Q 027212 188 VIRLTLPQ----LTSERRKELSKVVAKQAEE 214 (226)
Q Consensus 188 ~IrV~IP~----lT~E~RkeLvK~aKk~~E~ 214 (226)
.|.|.+.+ .|.|.+++|++.+-+...+
T Consensus 2 ~i~I~~~~~~~grs~eqK~~l~~~lt~~l~~ 32 (67)
T 3m21_A 2 FINIKLVPENGGPTNEQKQQLIEGVSDLMVK 32 (67)
T ss_dssp EEEEEECCBTTBSCHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEecCCCCCCHHHHHHHHHHHHHHHHH
Confidence 46777764 8999999999998887654
No 29
>1nye_A Osmotically inducible protein C; OSMC, structural genomics, peroxiredoxin, BSGC structure funded by NIH, protein structure initiative, PSI; 2.40A {Escherichia coli} SCOP: d.227.1.1
Probab=25.12 E-value=67 Score=25.39 Aligned_cols=26 Identities=4% Similarity=0.095 Sum_probs=21.9
Q ss_pred eEEEeCCCCCHHHHHHHHHHHHHHHH
Q 027212 188 VIRLTLPQLTSERRKELSKVVAKQAE 213 (226)
Q Consensus 188 ~IrV~IP~lT~E~RkeLvK~aKk~~E 213 (226)
.+.|.+|.+++|..+++++.|.+.|=
T Consensus 120 ~~~v~~~g~~~e~~~~l~~~A~~~Cp 145 (162)
T 1nye_A 120 KSEVAVPGIDASTFDGIIQKAKAGCP 145 (162)
T ss_dssp EEEEECTTCCHHHHHHHHHHHHHHSH
T ss_pred EEEEEECCCCHHHHHHHHHHHHhcCc
Confidence 46778899999999999999887663
No 30
>3t7z_A Nucleolar protein NOP 56/58; alpha beta fold, RNP assembly and methylation, L7AE, box C/D protein binding; 1.70A {Methanocaldococcus jannaschii}
Probab=24.92 E-value=43 Score=26.20 Aligned_cols=42 Identities=21% Similarity=0.405 Sum_probs=34.2
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCcCCCceeEEEECCc-ccccc
Q 027212 90 EAEKSSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGS-PVSLK 143 (226)
Q Consensus 90 ~~e~d~il~~~~~kM~kaie~lk~el~kiRtGRa~P~lLd~I~Ve~yG~-~~pL~ 143 (226)
++|++.|.-+++..=.++++.||++.. |.|.|++-+. +.|+.
T Consensus 34 eeeIP~Imy~lr~~~~~i~eeLK~eW~------------dev~~E~~~~~p~~~G 76 (119)
T 3t7z_A 34 EEEIPDIMFKLKTQPNKIADELKEEWG------------DEIKLETLSTEPFNIG 76 (119)
T ss_dssp GGGHHHHHHHHHHCHHHHHHHHHHHHT------------SCEEEGGGCSSCCHHH
T ss_pred chhhHHHHHHHhcCcHHHHHHHHHHhc------------chheeeeccCCCchHH
Confidence 367888999999999999999999995 8999998763 34443
No 31
>3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300}
Probab=24.77 E-value=3.2e+02 Score=23.21 Aligned_cols=53 Identities=17% Similarity=0.179 Sum_probs=40.3
Q ss_pred cHHHHHHHHHhCCCCCCc-c--------CCCCeEEEeCCCCCHHHHHHHHHHHHHHHHHHHH
Q 027212 165 SLKSIEKAIVSSDLGMTP-N--------NDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKV 217 (226)
Q Consensus 165 ~ik~IekAI~~SnLglnP-q--------~DG~~IrV~IP~lT~E~RkeLvK~aKk~~E~aKv 217 (226)
....+...+.+.++-+.| . .....|||.++..|+|.-++.++.+++..+++..
T Consensus 356 ~~~~~~~~l~~~gv~v~~~g~~~~~~~~~~~~~iRis~~~~~~~~i~~~~~~l~~~l~~~~~ 417 (423)
T 3ez1_A 356 VADRVVKLAEAAGVSLTPAGATYPAGQDPHNRNLRLAPTRPPVEEVRTAMQVVAACIRLATE 417 (423)
T ss_dssp CHHHHHHHHHHTTEECCCTTTTSSTTCCSSSCEEEECCSSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHCCcEEecCcccccCCCCCCCCeEEEEcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 356677777877777666 1 2346899999878999999999999888776653
No 32
>1ukk_A Osmotically inducible protein C; peroxidase, cysteinesulfinic acid, riken structural genomics/proteomics initiative, RSGI; HET: MSE; 1.60A {Thermus thermophilus} SCOP: d.227.1.1
Probab=21.79 E-value=45 Score=25.60 Aligned_cols=25 Identities=16% Similarity=0.340 Sum_probs=20.6
Q ss_pred eEEEeCCCCCHHHHHHHHHHHHHHH
Q 027212 188 VIRLTLPQLTSERRKELSKVVAKQA 212 (226)
Q Consensus 188 ~IrV~IP~lT~E~RkeLvK~aKk~~ 212 (226)
.++|.+|.+++|.++++++.+.+.|
T Consensus 99 ~~~v~~~~~~~e~~~~l~~~a~~~C 123 (142)
T 1ukk_A 99 LTEAEVPGISSEKFLEIAEAAKEGC 123 (142)
T ss_dssp EEEEECTTCCHHHHHHHHHHHTTSS
T ss_pred EEEEEeCCCCHHHHHHHHHHHHhcC
Confidence 3677888999999999998887655
No 33
>3lb5_A HIT-like protein involved in cell-cycle regulatio; niaid, seattle structural genomics center for infectious DIS ssgcid, histidine triad; 1.90A {Bartonella henselae}
Probab=20.91 E-value=2.1e+02 Score=22.33 Aligned_cols=41 Identities=22% Similarity=0.268 Sum_probs=32.4
Q ss_pred CCCCccCCCCeEEEe------CCCCCHHHHHHHHHHHHHHHHHHHHH
Q 027212 178 LGMTPNNDGEVIRLT------LPQLTSERRKELSKVVAKQAEEGKVV 218 (226)
Q Consensus 178 LglnPq~DG~~IrV~------IP~lT~E~RkeLvK~aKk~~E~aKv~ 218 (226)
+++.|...|..+-|| +-.++.|.+.+|...+++.++.-+..
T Consensus 55 ~d~~P~~pgH~LViPk~H~~~l~dL~~ee~~~l~~~~~~v~~~l~~~ 101 (161)
T 3lb5_A 55 MDIMPQAPGHTLVIPKKGSRNLLDADTETLFPVIKAVQKIAKAVKKA 101 (161)
T ss_dssp ECSSCSSTTCEEEEESSCCSSTTTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ECCCcCCCcEEEEEEeeccchhhhCCHHHHHHHHHHHHHHHHHHHHh
Confidence 456777889998888 45689999999999999888765543
No 34
>3p0t_A Uncharacterized protein; ssgcid, HIT-like protein, mycobacerium paratuberculosis, STR genomics; 1.90A {Mycobacterium avium subsp}
Probab=20.77 E-value=1.6e+02 Score=22.05 Aligned_cols=41 Identities=12% Similarity=0.122 Sum_probs=32.1
Q ss_pred CCCCccCCCCeEEEe------CCCCCHHHHHHHHHHHHHHHHHHHHH
Q 027212 178 LGMTPNNDGEVIRLT------LPQLTSERRKELSKVVAKQAEEGKVV 218 (226)
Q Consensus 178 LglnPq~DG~~IrV~------IP~lT~E~RkeLvK~aKk~~E~aKv~ 218 (226)
++..|...|..+-|| +-.+|.|.+.+|...+++.+..-+..
T Consensus 32 ~d~~P~~pgH~LViPk~H~~~l~dL~~~e~~~l~~~~~~v~~~l~~~ 78 (138)
T 3p0t_A 32 LTIEPMTQGHTLVVPREEIDNWQDVDSAAFNRVMGVSQLIGKAVCKA 78 (138)
T ss_dssp ECSSCSSTTCEEEEESSCCCCGGGSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecCCCCCCcEEEEEEhHHhCchhhCCHHHHHHHHHHHHHHHHHHHHh
Confidence 366788889988888 34578999999999998888765543
No 35
>3axj_B TRAX, translin associated factor X, isoform B; translin/TRAX heterodimer, passenger RNA cleavage, RNAse, DN protein; 2.10A {Drosophila melanogaster} PDB: 3riu_C
Probab=20.59 E-value=78 Score=27.92 Aligned_cols=28 Identities=25% Similarity=0.445 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 027212 198 SERRKELSKVVAKQAEEGKVVMLLLFTI 225 (226)
Q Consensus 198 ~E~RkeLvK~aKk~~E~aKv~IR~~~~~ 225 (226)
.+.|++++|.++.+.-.+|..|..||.+
T Consensus 45 ~d~RErIikisRdIt~~Sk~~If~Lhr~ 72 (298)
T 3axj_B 45 HDRHERIVKLSRDITIESKRIIFLLHSI 72 (298)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3789999999999999999999999975
No 36
>2hbp_A Cytoskeleton assembly control protein SLA1; SHD1, NPFX(1,2)D, endocytosis, protein binding; NMR {Saccharomyces cerevisiae}
Probab=20.53 E-value=38 Score=24.12 Aligned_cols=33 Identities=21% Similarity=0.224 Sum_probs=26.3
Q ss_pred CCCCeEEEeCCCCCHHHHHHHHHHHHHHHHHHH
Q 027212 184 NDGEVIRLTLPQLTSERRKELSKVVAKQAEEGK 216 (226)
Q Consensus 184 ~DG~~IrV~IP~lT~E~RkeLvK~aKk~~E~aK 216 (226)
.+|..|-||+.+|+.|-++-+-+..+.-.++.|
T Consensus 34 ~nGv~I~VP~~klS~~D~~yve~~~g~sl~~~k 66 (68)
T 2hbp_A 34 ANGVKIAVAADKLSNEDLAYVEKITGFSLEKFK 66 (68)
T ss_dssp TTSCEEEEETTSBCHHHHHHHHHHHSCCCGGGC
T ss_pred cCCcEEEeEhHHcCHHHHHHHHHHhcccccccC
Confidence 578999999999999999888777666555443
No 37
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=20.06 E-value=89 Score=22.88 Aligned_cols=30 Identities=20% Similarity=0.144 Sum_probs=25.2
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHhhc
Q 027212 193 LPQLTSERRKELSKVVAKQAEEGKVVMLLL 222 (226)
Q Consensus 193 IP~lT~E~RkeLvK~aKk~~E~aKv~IR~~ 222 (226)
+|.++.|.|+.+++.+....++|..-|+..
T Consensus 24 ~~~~~ge~Rk~~i~~ie~~ldEA~ell~qM 53 (97)
T 3onj_A 24 APSQPLSQRNTTLKHVEQQQDELFDLLDQM 53 (97)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357778999999999999999998877653
Done!