Query 027214
Match_columns 226
No_of_seqs 201 out of 719
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 06:39:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027214.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027214hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5066 SCS2 VAMP-associated p 100.0 3.2E-28 7E-33 203.3 9.8 119 10-130 3-122 (242)
2 KOG0439 VAMP-associated protei 99.9 7.7E-27 1.7E-31 199.0 14.4 128 5-134 4-134 (218)
3 PF00635 Motile_Sperm: MSP (Ma 99.9 1.5E-23 3.3E-28 159.5 10.2 91 10-101 2-93 (109)
4 PF14874 PapD-like: Flagellar- 98.6 7.9E-07 1.7E-11 66.7 11.5 70 8-77 2-74 (102)
5 PF00345 PapD_N: Pili and flag 97.2 0.0048 1E-07 47.7 10.3 83 10-99 2-93 (122)
6 PRK10884 SH3 domain-containing 95.4 0.04 8.7E-07 47.1 6.0 59 156-214 134-194 (206)
7 PRK09918 putative fimbrial cha 94.9 0.37 8.1E-06 41.7 10.7 85 8-99 24-113 (230)
8 PRK09926 putative chaperone pr 94.2 0.45 9.8E-06 41.6 9.7 88 7-99 24-121 (246)
9 PF14646 MYCBPAP: MYCBP-associ 94.2 0.3 6.6E-06 45.9 9.2 97 16-132 238-347 (426)
10 PRK15249 fimbrial chaperone pr 93.9 0.64 1.4E-05 40.8 10.1 88 7-99 27-125 (253)
11 PF07610 DUF1573: Protein of u 92.9 0.65 1.4E-05 29.8 6.4 43 31-74 2-45 (45)
12 PRK15295 fimbrial assembly cha 92.7 1.5 3.3E-05 37.8 10.4 86 8-99 19-111 (226)
13 PRK15246 fimbrial assembly cha 92.6 2.4 5.3E-05 36.8 11.5 87 8-99 10-106 (233)
14 PRK11385 putativi pili assembl 92.6 2.1 4.6E-05 37.2 11.1 88 7-99 25-124 (236)
15 PRK15299 fimbrial chaperone pr 92.5 1.7 3.6E-05 37.6 10.3 86 8-99 22-115 (227)
16 PRK15211 fimbrial chaperone pr 92.3 1.2 2.5E-05 38.7 9.2 86 8-99 22-113 (229)
17 PF11614 FixG_C: IG-like fold 91.7 0.97 2.1E-05 34.5 7.2 50 28-77 34-85 (118)
18 PRK15192 fimbrial chaperone Bc 90.9 4.3 9.4E-05 35.3 11.2 84 8-99 22-119 (234)
19 PRK15208 long polar fimbrial c 90.7 3 6.5E-05 36.0 10.0 86 8-99 21-112 (228)
20 PRK15290 lfpB fimbrial chapero 90.4 5.9 0.00013 34.7 11.7 113 8-132 37-157 (243)
21 PRK10884 SH3 domain-containing 89.5 0.92 2E-05 38.8 5.7 60 158-217 129-193 (206)
22 COG3121 FimC P pilus assembly 89.4 6.9 0.00015 33.9 11.3 87 8-100 27-120 (235)
23 PRK15188 fimbrial chaperone pr 88.6 9.6 0.00021 33.0 11.6 86 8-99 27-118 (228)
24 PRK15195 fimbrial chaperone pr 88.2 6.8 0.00015 33.9 10.4 86 8-99 25-116 (229)
25 PRK15254 fimbrial chaperone pr 87.5 13 0.00028 32.5 11.7 87 8-99 16-110 (239)
26 PF06280 DUF1034: Fn3-like dom 87.2 2.2 4.8E-05 32.2 6.1 54 24-77 7-81 (112)
27 PRK15218 fimbrial chaperone pr 86.5 15 0.00032 31.8 11.5 113 9-133 19-141 (226)
28 PRK15224 pili assembly chapero 86.5 13 0.00029 32.4 11.2 82 10-99 30-118 (237)
29 PF15188 CCDC-167: Coiled-coil 84.0 3 6.5E-05 30.8 5.1 28 158-185 40-67 (85)
30 PF05957 DUF883: Bacterial pro 83.9 11 0.00023 27.8 8.2 21 192-212 72-92 (94)
31 PRK15274 putative periplasmic 82.8 27 0.00059 30.8 11.6 85 10-99 28-120 (257)
32 PRK15253 putative fimbrial ass 82.7 27 0.00059 30.5 11.5 85 9-99 34-128 (242)
33 PF10633 NPCBM_assoc: NPCBM-as 80.9 3.9 8.5E-05 28.8 4.7 56 24-79 4-63 (78)
34 PRK15233 putative fimbrial cha 80.6 38 0.00082 29.7 11.6 82 10-99 42-130 (246)
35 TIGR03079 CH4_NH3mon_ox_B meth 80.1 4.5 9.7E-05 37.6 5.8 55 23-77 280-355 (399)
36 smart00340 HALZ homeobox assoc 79.8 4.1 9E-05 26.1 3.9 27 158-184 9-35 (44)
37 PF07334 IFP_35_N: Interferon- 79.5 4 8.7E-05 29.5 4.3 28 156-183 2-29 (76)
38 PF10779 XhlA: Haemolysin XhlA 78.4 8.9 0.00019 26.9 5.8 16 197-212 56-71 (71)
39 PRK01844 hypothetical protein; 77.8 2.6 5.6E-05 30.1 2.8 16 196-211 9-24 (72)
40 PRK15285 putative fimbrial cha 77.6 49 0.0011 29.1 11.8 86 9-99 26-119 (250)
41 smart00809 Alpha_adaptinC2 Ada 77.6 17 0.00037 26.6 7.5 53 24-76 17-73 (104)
42 PF02344 Myc-LZ: Myc leucine z 77.1 9.4 0.0002 22.9 4.6 26 157-182 4-29 (32)
43 COG3763 Uncharacterized protei 75.9 3.1 6.7E-05 29.5 2.8 18 196-213 5-22 (71)
44 PRK00888 ftsB cell division pr 75.2 6.9 0.00015 29.8 4.8 31 152-182 32-62 (105)
45 PF02183 HALZ: Homeobox associ 75.0 10 0.00022 24.5 4.9 31 153-183 11-41 (45)
46 PRK00523 hypothetical protein; 75.0 3.7 8E-05 29.3 3.0 18 194-211 8-25 (72)
47 PF04977 DivIC: Septum formati 74.8 7.6 0.00016 27.1 4.7 30 152-181 22-51 (80)
48 PRK10404 hypothetical protein; 74.1 15 0.00032 27.8 6.4 21 192-212 79-99 (101)
49 PF00927 Transglut_C: Transglu 73.9 18 0.00039 26.8 6.9 55 23-77 13-77 (107)
50 PF05506 DUF756: Domain of unk 72.4 16 0.00034 26.5 6.0 46 27-75 20-66 (89)
51 PRK01844 hypothetical protein; 71.4 4.3 9.2E-05 29.0 2.6 23 194-216 3-25 (72)
52 PRK10132 hypothetical protein; 71.1 18 0.00039 27.7 6.3 21 192-212 85-105 (108)
53 PF06305 DUF1049: Protein of u 70.9 2.7 5.9E-05 28.8 1.6 23 195-217 18-40 (68)
54 PRK00523 hypothetical protein; 70.9 4.6 0.0001 28.8 2.7 24 193-216 3-26 (72)
55 PF03672 UPF0154: Uncharacteri 70.8 3.7 7.9E-05 28.7 2.1 17 196-212 2-18 (64)
56 PF07716 bZIP_2: Basic region 70.5 15 0.00032 24.2 5.1 28 155-182 26-53 (54)
57 PRK09400 secE preprotein trans 69.6 16 0.00035 25.1 5.2 17 200-216 42-58 (61)
58 PF02753 PapD_C: Pili assembly 69.1 5.2 0.00011 27.4 2.7 44 31-74 1-45 (68)
59 PF02404 SCF: Stem cell factor 68.8 1.6 3.5E-05 38.6 0.0 25 191-215 212-236 (273)
60 COG3763 Uncharacterized protei 67.5 6.9 0.00015 27.8 3.0 20 193-212 6-25 (71)
61 PF06156 DUF972: Protein of un 67.1 15 0.00033 28.1 5.1 25 156-180 31-55 (107)
62 PF07790 DUF1628: Protein of u 66.6 7.3 0.00016 27.7 3.1 29 194-224 11-39 (80)
63 PF02883 Alpha_adaptinC2: Adap 66.6 28 0.00061 26.0 6.6 81 17-97 13-101 (115)
64 PF04744 Monooxygenase_B: Mono 66.3 29 0.00063 32.4 7.6 65 10-76 249-335 (381)
65 PF04420 CHD5: CHD5-like prote 66.2 11 0.00024 30.7 4.5 19 166-184 71-89 (161)
66 COG4575 ElaB Uncharacterized c 66.1 25 0.00055 26.9 6.0 21 192-212 82-102 (104)
67 TIGR02745 ccoG_rdxA_fixG cytoc 66.0 93 0.002 29.6 11.2 72 6-77 324-400 (434)
68 PF11611 DUF4352: Domain of un 64.7 35 0.00077 25.4 6.8 52 25-76 36-101 (123)
69 PF05753 TRAP_beta: Translocon 64.3 75 0.0016 26.5 9.2 53 23-76 36-97 (181)
70 smart00338 BRLZ basic region l 63.5 22 0.00047 24.2 4.9 29 155-183 27-55 (65)
71 PRK15308 putative fimbrial pro 63.4 1E+02 0.0022 26.9 11.8 87 6-100 14-118 (234)
72 PF06005 DUF904: Protein of un 62.9 26 0.00057 24.9 5.3 19 152-170 16-34 (72)
73 PF11120 DUF2636: Protein of u 62.3 10 0.00022 26.3 3.0 21 194-214 7-27 (62)
74 TIGR02209 ftsL_broad cell divi 61.7 21 0.00045 25.4 4.8 28 153-180 30-57 (85)
75 PRK13169 DNA replication intia 61.5 19 0.00042 27.8 4.8 28 153-180 28-55 (110)
76 PF10482 CtIP_N: Tumour-suppre 61.0 12 0.00027 29.0 3.6 24 154-177 96-119 (120)
77 PRK13169 DNA replication intia 60.6 24 0.00052 27.2 5.2 34 152-185 20-53 (110)
78 PF06156 DUF972: Protein of un 60.5 21 0.00045 27.3 4.8 33 152-184 20-52 (107)
79 KOG4343 bZIP transcription fac 60.3 23 0.00049 34.6 5.9 27 156-182 311-337 (655)
80 PF00170 bZIP_1: bZIP transcri 59.8 30 0.00065 23.4 5.1 29 155-183 27-55 (64)
81 PF14197 Cep57_CLD_2: Centroso 59.1 27 0.00058 24.6 4.8 15 168-182 47-61 (69)
82 PF05377 FlaC_arch: Flagella a 58.7 35 0.00076 23.1 5.0 30 153-182 6-35 (55)
83 PF13600 DUF4140: N-terminal d 58.2 73 0.0016 23.5 7.9 29 155-183 71-99 (104)
84 PF04678 DUF607: Protein of un 58.1 46 0.001 27.5 6.9 30 155-184 58-87 (180)
85 PF13807 GNVR: G-rich domain o 57.3 67 0.0014 22.8 8.8 19 158-176 8-26 (82)
86 PF13473 Cupredoxin_1: Cupredo 57.2 50 0.0011 24.3 6.4 51 11-73 31-81 (104)
87 PF03173 CHB_HEX: Putative car 57.2 12 0.00025 30.9 3.1 35 42-76 68-104 (164)
88 PRK14127 cell division protein 56.2 32 0.0007 26.5 5.2 30 155-184 38-67 (109)
89 KOG0709 CREB/ATF family transc 56.0 29 0.00064 33.2 5.8 24 158-181 290-313 (472)
90 PF00553 CBM_2: Cellulose bind 55.9 34 0.00074 25.4 5.3 52 25-76 13-84 (101)
91 PF06305 DUF1049: Protein of u 55.5 15 0.00033 25.0 3.0 25 157-181 44-68 (68)
92 PF14257 DUF4349: Domain of un 55.1 88 0.0019 27.1 8.5 26 158-183 166-191 (262)
93 PRK14750 kdpF potassium-transp 55.0 26 0.00055 20.5 3.3 24 194-217 3-26 (29)
94 PF06005 DUF904: Protein of un 54.4 35 0.00075 24.3 4.7 27 155-181 26-52 (72)
95 COG4499 Predicted membrane pro 54.3 21 0.00046 33.5 4.6 57 157-218 188-246 (434)
96 COG3074 Uncharacterized protei 54.1 34 0.00074 24.4 4.5 27 152-178 16-42 (79)
97 PF06612 DUF1146: Protein of u 53.5 15 0.00033 24.0 2.6 20 194-213 26-45 (48)
98 PRK02898 cobalt transport prot 53.0 6.8 0.00015 29.7 1.0 24 191-214 66-89 (100)
99 PF00170 bZIP_1: bZIP transcri 52.5 44 0.00096 22.6 5.0 32 152-183 31-62 (64)
100 PF00672 HAMP: HAMP domain; I 52.4 22 0.00049 23.7 3.5 24 195-218 3-26 (70)
101 PF03980 Nnf1: Nnf1 ; InterPr 51.7 31 0.00067 25.9 4.5 29 154-182 80-108 (109)
102 TIGR03752 conj_TIGR03752 integ 51.7 28 0.00061 33.4 5.1 31 154-184 66-96 (472)
103 PF01166 TSC22: TSC-22/dip/bun 51.5 41 0.00089 23.1 4.4 32 154-185 14-45 (59)
104 PF01166 TSC22: TSC-22/dip/bun 51.1 32 0.0007 23.6 3.9 26 151-176 18-43 (59)
105 PF03907 Spo7: Spo7-like prote 50.8 38 0.00083 29.0 5.2 26 196-221 31-56 (207)
106 PRK09413 IS2 repressor TnpA; R 50.8 31 0.00067 26.5 4.4 27 157-183 74-100 (121)
107 PRK14127 cell division protein 50.7 45 0.00098 25.7 5.2 34 151-184 27-60 (109)
108 TIGR03142 cytochro_ccmI cytoch 50.5 1E+02 0.0022 23.6 7.2 24 155-178 44-70 (117)
109 PF12690 BsuPI: Intracellular 50.4 72 0.0016 23.0 6.0 18 28-45 3-20 (82)
110 PF07798 DUF1640: Protein of u 50.1 85 0.0019 25.8 7.2 18 194-211 157-174 (177)
111 smart00338 BRLZ basic region l 49.7 57 0.0012 22.0 5.2 32 152-183 31-62 (65)
112 KOG4196 bZIP transcription fac 49.1 32 0.00069 27.4 4.2 26 158-183 78-103 (135)
113 PRK15422 septal ring assembly 48.9 47 0.001 24.2 4.7 28 151-178 15-42 (79)
114 PF05957 DUF883: Bacterial pro 48.8 75 0.0016 23.1 6.1 20 197-216 73-92 (94)
115 PF12709 Kinetocho_Slk19: Cent 48.6 46 0.001 24.6 4.7 29 155-183 50-78 (87)
116 PF06645 SPC12: Microsomal sig 48.3 23 0.00049 25.4 3.1 20 195-214 15-34 (76)
117 smart00637 CBD_II CBD_II domai 48.2 98 0.0021 22.2 6.6 24 51-74 50-75 (92)
118 PF12808 Mto2_bdg: Micro-tubul 48.0 42 0.0009 22.4 4.0 24 159-182 27-50 (52)
119 PF10458 Val_tRNA-synt_C: Valy 47.3 43 0.00094 23.0 4.3 26 159-184 2-27 (66)
120 PF07716 bZIP_2: Basic region 47.1 47 0.001 21.8 4.3 23 154-176 32-54 (54)
121 PF06716 DUF1201: Protein of u 46.5 25 0.00055 23.0 2.7 26 191-216 12-37 (54)
122 KOG3119 Basic region leucine z 46.5 42 0.00091 29.7 5.1 29 155-183 223-251 (269)
123 PF09608 Alph_Pro_TM: Putative 45.5 21 0.00045 31.2 3.0 25 192-216 210-234 (236)
124 PF06072 Herpes_US9: Alphaherp 45.0 30 0.00065 23.8 3.0 18 196-213 41-58 (60)
125 PF07407 Seadorna_VP6: Seadorn 44.5 33 0.00071 31.6 4.1 25 157-181 35-59 (420)
126 KOG4196 bZIP transcription fac 44.5 64 0.0014 25.7 5.2 27 157-183 84-110 (135)
127 PF05781 MRVI1: MRVI1 protein; 44.0 24 0.00051 34.4 3.3 31 192-222 479-509 (538)
128 PRK14748 kdpF potassium-transp 43.9 43 0.00093 19.6 3.1 22 195-216 4-25 (29)
129 PRK04081 hypothetical protein; 43.3 27 0.00058 29.8 3.2 25 188-212 117-141 (207)
130 PF07106 TBPIP: Tat binding pr 43.3 46 0.001 27.0 4.6 32 151-182 76-107 (169)
131 PF09877 DUF2104: Predicted me 43.2 17 0.00037 27.5 1.8 21 196-216 3-23 (99)
132 PF04728 LPP: Lipoprotein leuc 43.0 83 0.0018 21.4 4.9 23 158-180 7-29 (56)
133 COG4640 Predicted membrane pro 42.2 33 0.00071 32.4 3.8 29 194-222 54-82 (465)
134 PHA02414 hypothetical protein 41.7 1.5E+02 0.0034 22.4 6.8 50 163-212 59-108 (111)
135 PRK00888 ftsB cell division pr 40.6 64 0.0014 24.4 4.7 27 157-183 30-56 (105)
136 PHA00094 VI minor coat protein 40.5 39 0.00085 26.1 3.4 22 191-212 6-27 (112)
137 TIGR02894 DNA_bind_RsfA transc 40.4 68 0.0015 26.5 5.0 29 155-183 105-133 (161)
138 PRK15249 fimbrial chaperone pr 40.3 79 0.0017 27.7 5.8 43 30-73 177-220 (253)
139 PF06030 DUF916: Bacterial pro 40.3 74 0.0016 24.7 5.1 30 17-46 19-48 (121)
140 PF07705 CARDB: CARDB; InterP 39.3 1.2E+02 0.0026 21.2 5.9 54 24-77 18-72 (101)
141 PF04102 SlyX: SlyX; InterPro 38.8 1E+02 0.0022 21.4 5.1 32 154-185 18-49 (69)
142 PF11772 EpuA: DNA-directed RN 38.8 18 0.00039 23.7 1.1 19 196-214 3-21 (47)
143 PF03904 DUF334: Domain of unk 38.8 85 0.0018 27.3 5.6 7 172-178 124-130 (230)
144 PRK00295 hypothetical protein; 38.7 90 0.0019 21.7 4.8 30 154-183 19-48 (68)
145 PF04977 DivIC: Septum formati 38.5 80 0.0017 21.7 4.7 28 156-183 19-46 (80)
146 PF09489 CbtB: Probable cobalt 38.4 47 0.001 22.4 3.2 22 193-214 12-33 (54)
147 COG4467 Regulator of replicati 38.3 81 0.0018 24.3 4.8 27 156-182 24-50 (114)
148 PF08172 CASP_C: CASP C termin 38.3 63 0.0014 28.4 4.9 25 157-181 96-120 (248)
149 PRK04406 hypothetical protein; 38.2 89 0.0019 22.3 4.8 30 155-184 26-55 (75)
150 COG5415 Predicted integral mem 38.1 85 0.0018 27.2 5.4 58 155-212 16-87 (251)
151 COG3771 Predicted membrane pro 38.1 38 0.00083 25.2 2.9 20 196-215 44-63 (97)
152 PF02687 FtsX: FtsX-like perme 38.1 1.1E+02 0.0025 21.9 5.7 44 172-215 25-69 (121)
153 PF05308 Mito_fiss_reg: Mitoch 37.9 1E+02 0.0022 27.2 6.1 23 151-173 119-141 (253)
154 PRK02793 phi X174 lysis protei 37.9 92 0.002 21.9 4.8 29 155-183 23-51 (72)
155 PF00957 Synaptobrevin: Synapt 37.8 55 0.0012 23.5 3.8 17 166-182 36-52 (89)
156 COG1470 Predicted membrane pro 37.7 3.9E+02 0.0085 26.0 10.9 89 6-98 378-470 (513)
157 PRK15422 septal ring assembly 37.4 95 0.0021 22.6 4.8 19 163-181 48-66 (79)
158 PF11859 DUF3379: Protein of u 37.4 1.3E+02 0.0028 26.3 6.6 29 190-218 75-103 (232)
159 TIGR02327 int_mem_ywzB conserv 36.8 34 0.00074 24.1 2.4 20 194-213 33-52 (68)
160 PF05812 Herpes_BLRF2: Herpesv 36.8 68 0.0015 25.1 4.3 23 155-177 4-26 (118)
161 PF04999 FtsL: Cell division p 36.6 85 0.0018 22.9 4.7 26 155-180 43-68 (97)
162 PHA03155 hypothetical protein; 36.6 53 0.0011 25.6 3.6 23 155-177 9-31 (115)
163 PF04880 NUDE_C: NUDE protein, 36.5 30 0.00066 28.6 2.5 21 161-181 24-44 (166)
164 PF13314 DUF4083: Domain of un 36.4 54 0.0012 22.4 3.2 25 196-220 12-36 (58)
165 PRK13922 rod shape-determining 36.0 77 0.0017 27.7 5.1 27 157-183 79-108 (276)
166 PF01105 EMP24_GP25L: emp24/gp 35.9 13 0.00029 29.4 0.2 26 190-215 157-182 (183)
167 PF13544 N_methyl_2: Type IV p 35.8 43 0.00093 19.7 2.4 16 188-203 12-27 (31)
168 PRK02119 hypothetical protein; 35.6 1E+02 0.0023 21.8 4.8 29 155-183 24-52 (73)
169 PF13334 DUF4094: Domain of un 35.4 36 0.00078 25.5 2.5 24 196-219 4-28 (95)
170 PF09640 DUF2027: Domain of un 35.4 77 0.0017 26.2 4.6 67 27-100 18-84 (162)
171 PF10883 DUF2681: Protein of u 35.2 89 0.0019 23.1 4.5 23 157-179 26-48 (87)
172 PF02183 HALZ: Homeobox associ 35.1 88 0.0019 20.1 4.0 28 157-184 8-35 (45)
173 PF05103 DivIVA: DivIVA protei 35.0 39 0.00085 25.8 2.8 33 150-182 21-53 (131)
174 KOG3287 Membrane trafficking p 34.8 1.8E+02 0.0039 25.3 6.9 30 192-221 200-229 (236)
175 PHA03162 hypothetical protein; 34.7 57 0.0012 26.0 3.6 23 155-177 14-36 (135)
176 PRK00736 hypothetical protein; 34.5 1.1E+02 0.0025 21.2 4.8 30 154-183 19-48 (68)
177 TIGR03592 yidC_oxa1_cterm memb 34.5 2E+02 0.0043 23.6 7.1 17 168-184 47-63 (181)
178 PF10342 GPI-anchored: Ser-Thr 34.2 1.6E+02 0.0036 20.5 6.8 59 14-73 14-77 (93)
179 COG1963 Uncharacterized protei 34.0 1.1E+02 0.0023 25.0 5.1 27 190-216 126-152 (153)
180 COG3121 FimC P pilus assembly 33.7 82 0.0018 27.2 4.8 43 29-73 165-209 (235)
181 PF14235 DUF4337: Domain of un 33.5 2.6E+02 0.0056 22.8 7.5 22 155-176 74-95 (157)
182 PRK04325 hypothetical protein; 33.5 1.2E+02 0.0026 21.5 4.8 29 155-183 24-52 (74)
183 COG1930 CbiN ABC-type cobalt t 33.4 8.4 0.00018 28.8 -1.2 22 192-213 65-86 (97)
184 COG3074 Uncharacterized protei 32.9 1.2E+02 0.0026 21.7 4.6 22 157-178 42-63 (79)
185 PF06483 ChiC: Chitinase C; I 32.8 50 0.0011 27.7 3.1 26 39-75 116-141 (180)
186 TIGR02230 ATPase_gene1 F0F1-AT 32.7 92 0.002 23.6 4.3 18 198-215 53-70 (100)
187 PF09813 Coiled-coil_56: Coile 32.7 1E+02 0.0022 23.4 4.5 19 196-214 52-70 (100)
188 cd06409 PB1_MUG70 The MUG70 pr 32.6 27 0.0006 25.7 1.4 22 42-63 2-25 (86)
189 TIGR01165 cbiN cobalt transpor 32.5 9 0.0002 28.6 -1.1 25 190-214 65-89 (91)
190 COG4467 Regulator of replicati 32.5 79 0.0017 24.4 3.9 30 150-179 25-54 (114)
191 KOG4343 bZIP transcription fac 32.5 1E+02 0.0022 30.3 5.5 31 155-185 303-333 (655)
192 KOG4005 Transcription factor X 32.0 87 0.0019 27.6 4.6 19 153-171 96-114 (292)
193 PF13314 DUF4083: Domain of un 31.6 70 0.0015 21.9 3.1 23 193-215 5-27 (58)
194 PF15058 Speriolin_N: Sperioli 31.6 63 0.0014 27.5 3.6 25 153-177 11-35 (200)
195 KOG4253 Tryptophan-rich basic 31.3 83 0.0018 26.0 4.1 16 150-165 47-62 (175)
196 PF11166 DUF2951: Protein of u 31.1 2.3E+02 0.005 21.3 6.5 20 196-215 73-92 (98)
197 PRK00753 psbL photosystem II r 31.0 34 0.00074 21.3 1.4 9 209-217 27-35 (39)
198 PF07664 FeoB_C: Ferrous iron 31.0 99 0.0021 20.3 3.9 22 196-217 5-27 (54)
199 PRK00720 tatA twin arginine tr 30.9 51 0.0011 23.9 2.6 17 190-206 2-18 (78)
200 TIGR03493 cellullose_BcsF cell 30.8 67 0.0015 22.2 3.0 21 194-214 7-27 (62)
201 KOG4797 Transcriptional regula 30.6 1.5E+02 0.0032 23.0 5.1 30 155-184 68-97 (123)
202 PF11668 Gp_UL130: HCMV glycop 30.5 1.4E+02 0.0031 24.3 5.3 43 17-59 102-154 (156)
203 PF04420 CHD5: CHD5-like prote 30.4 41 0.00089 27.4 2.3 25 157-181 69-93 (161)
204 KOG1692 Putative cargo transpo 30.1 2E+02 0.0043 24.5 6.3 59 158-216 129-196 (201)
205 PRK13922 rod shape-determining 30.1 1.1E+02 0.0024 26.7 5.1 25 156-180 71-95 (276)
206 PF12751 Vac7: Vacuolar segreg 29.9 33 0.00072 32.1 1.8 18 195-212 308-325 (387)
207 PF13815 Dzip-like_N: Iguana/D 29.9 1.5E+02 0.0032 22.7 5.3 25 158-182 91-115 (118)
208 PF11853 DUF3373: Protein of u 29.8 49 0.0011 32.0 3.0 26 156-182 27-52 (489)
209 PRK13743 conjugal transfer pro 29.8 65 0.0014 25.7 3.1 51 160-216 13-63 (141)
210 PRK09039 hypothetical protein; 29.8 98 0.0021 28.4 4.9 32 150-181 133-164 (343)
211 PF02419 PsbL: PsbL protein; 29.7 27 0.00059 21.6 0.8 7 198-204 22-28 (37)
212 PF08606 Prp19: Prp19/Pso4-lik 29.6 1.6E+02 0.0035 20.9 4.8 31 154-184 8-38 (70)
213 PRK04561 tatA twin arginine tr 29.6 57 0.0012 23.5 2.6 17 190-206 2-18 (75)
214 PF13205 Big_5: Bacterial Ig-l 29.5 2.1E+02 0.0046 20.4 8.1 56 16-74 26-84 (107)
215 PF08402 TOBE_2: TOBE domain; 29.5 1.7E+02 0.0036 19.2 7.2 65 10-74 1-69 (75)
216 PF11382 DUF3186: Protein of u 29.3 86 0.0019 28.3 4.4 27 156-182 34-60 (308)
217 PRK00846 hypothetical protein; 29.3 1.6E+02 0.0036 21.2 5.0 29 155-183 28-56 (77)
218 PF03302 VSP: Giardia variant- 29.2 29 0.00063 32.5 1.4 22 190-211 370-392 (397)
219 KOG4112 Signal peptidase subun 28.7 74 0.0016 24.0 3.1 23 191-213 26-48 (101)
220 PF04201 TPD52: Tumour protein 28.7 86 0.0019 25.9 3.8 20 158-177 33-52 (162)
221 PF04880 NUDE_C: NUDE protein, 28.4 27 0.00059 28.9 0.9 25 157-182 27-51 (166)
222 PF08277 PAN_3: PAN-like domai 28.2 1E+02 0.0022 20.7 3.7 19 27-45 53-71 (71)
223 PF08078 PsaX: PsaX family; I 28.0 98 0.0021 19.0 3.0 20 195-214 18-37 (37)
224 TIGR03096 nitroso_cyanin nitro 27.7 2.1E+02 0.0045 22.9 5.8 50 12-73 58-107 (135)
225 PRK15295 fimbrial assembly cha 27.3 1.3E+02 0.0028 25.9 5.0 40 30-73 158-198 (226)
226 COG5547 Small integral membran 27.1 90 0.0019 21.4 3.1 19 194-212 32-50 (62)
227 PRK09413 IS2 repressor TnpA; R 27.1 1.4E+02 0.003 22.8 4.7 32 152-183 76-107 (121)
228 PRK10803 tol-pal system protei 26.8 1.3E+02 0.0028 26.5 4.9 29 152-180 59-87 (263)
229 PRK15192 fimbrial chaperone Bc 26.8 1.7E+02 0.0036 25.4 5.6 40 30-73 163-203 (234)
230 PTZ00478 Sec superfamily; Prov 26.8 2E+02 0.0044 21.0 5.1 17 198-215 54-70 (81)
231 PHA03029 hypothetical protein; 26.7 89 0.0019 22.6 3.2 16 197-212 18-33 (92)
232 TIGR02459 CbtB cobalt transpor 26.7 89 0.0019 21.5 3.0 20 194-213 19-38 (60)
233 PRK02201 putative inner membra 26.5 2.2E+02 0.0048 26.4 6.6 16 170-185 186-201 (357)
234 PRK14139 heat shock protein Gr 26.4 2.5E+02 0.0053 23.6 6.3 32 154-185 39-70 (185)
235 PF07963 N_methyl: Prokaryotic 26.4 90 0.0019 16.7 2.4 17 190-206 1-18 (20)
236 PRK09926 putative chaperone pr 26.3 2.2E+02 0.0047 24.7 6.3 43 29-73 173-217 (246)
237 TIGR03510 XapX XapX domain. Th 26.3 97 0.0021 20.4 3.0 13 201-213 6-18 (49)
238 PRK00442 tatA twin arginine tr 26.2 66 0.0014 24.1 2.5 17 190-206 2-18 (92)
239 PF11544 Spc42p: Spindle pole 26.1 2.2E+02 0.0048 20.6 5.1 29 154-182 26-54 (76)
240 PF12325 TMF_TATA_bd: TATA ele 26.0 1.7E+02 0.0038 22.7 5.0 19 155-173 24-42 (120)
241 COG3937 Uncharacterized conser 25.9 76 0.0017 24.4 2.9 22 156-177 85-106 (108)
242 TIGR02449 conserved hypothetic 25.7 1.8E+02 0.0038 20.3 4.4 23 158-180 18-40 (65)
243 TIGR02209 ftsL_broad cell divi 25.7 2E+02 0.0042 20.2 5.0 29 156-184 26-54 (85)
244 KOG1690 emp24/gp25L/p24 family 25.7 4.3E+02 0.0094 22.7 8.0 28 154-181 139-166 (215)
245 PRK02958 tatA twin arginine tr 25.6 72 0.0016 22.8 2.5 16 191-206 3-18 (73)
246 COG1422 Predicted membrane pro 25.5 1.9E+02 0.0042 24.7 5.5 26 152-177 77-107 (201)
247 COG2991 Uncharacterized protei 25.4 64 0.0014 23.1 2.2 16 197-212 10-25 (77)
248 PF06522 B12D: NADH-ubiquinone 25.4 95 0.0021 21.8 3.2 25 196-220 10-34 (73)
249 smart00605 CW CW domain. 25.3 88 0.0019 22.6 3.1 22 30-51 58-80 (94)
250 PRK10265 chaperone-modulator p 25.1 1.8E+02 0.0038 21.7 4.8 26 152-177 69-94 (101)
251 PF03823 Neurokinin_B: Neuroki 25.1 80 0.0017 21.5 2.5 21 196-216 4-24 (59)
252 PTZ00443 Thioredoxin domain-co 25.1 2.6E+02 0.0057 24.0 6.4 15 200-214 182-196 (224)
253 KOG1769 Ubiquitin-like protein 25.0 92 0.002 23.6 3.1 25 27-51 19-43 (99)
254 PF15168 TRIQK: Triple QxxK/R 24.8 1.5E+02 0.0032 21.5 4.0 20 190-209 46-65 (79)
255 PF04340 DUF484: Protein of un 24.7 88 0.0019 26.5 3.5 30 155-184 41-70 (225)
256 cd07429 Cby_like Chibby, a nuc 24.7 1.8E+02 0.0039 22.4 4.7 29 154-182 72-100 (108)
257 TIGR03752 conj_TIGR03752 integ 24.5 1.3E+02 0.0028 29.1 4.7 28 150-177 69-96 (472)
258 PF05529 Bap31: B-cell recepto 24.3 1.2E+02 0.0027 24.9 4.2 28 157-184 157-184 (192)
259 PF10031 DUF2273: Small integr 24.3 98 0.0021 20.4 2.8 15 196-210 34-48 (51)
260 PF14775 NYD-SP28_assoc: Sperm 24.1 1.4E+02 0.0031 20.3 3.7 18 158-175 37-54 (60)
261 PF11833 DUF3353: Protein of u 24.1 74 0.0016 26.9 2.8 24 194-217 139-162 (194)
262 PF08826 DMPK_coil: DMPK coile 23.9 2.5E+02 0.0054 19.3 5.1 15 168-182 39-53 (61)
263 PRK14147 heat shock protein Gr 23.9 2.5E+02 0.0055 23.2 5.9 34 152-185 23-56 (172)
264 PHA00024 IX minor coat protein 23.7 1E+02 0.0023 18.6 2.6 16 197-212 4-19 (33)
265 TIGR00327 secE_euk_arch protei 23.5 1.6E+02 0.0035 20.2 3.9 12 205-216 43-54 (61)
266 PRK01622 OxaA-like protein pre 23.5 2.5E+02 0.0054 24.6 6.1 14 172-185 118-131 (256)
267 PF15018 InaF-motif: TRP-inter 23.0 1.6E+02 0.0036 18.3 3.5 25 194-218 11-35 (38)
268 PF09006 Surfac_D-trimer: Lung 22.9 2.3E+02 0.0049 18.5 4.6 26 158-183 3-28 (46)
269 PF10473 CENP-F_leu_zip: Leuci 22.8 2.1E+02 0.0046 23.0 5.0 28 154-181 52-79 (140)
270 KOG0977 Nuclear envelope prote 22.8 1.4E+02 0.0031 29.3 4.8 31 154-184 162-192 (546)
271 PRK10722 hypothetical protein; 22.8 2E+02 0.0042 25.4 5.1 22 160-181 175-196 (247)
272 TIGR02736 cbb3_Q_epsi cytochro 22.4 1.1E+02 0.0024 20.7 2.8 21 196-216 5-25 (56)
273 PF00631 G-gamma: GGL domain; 22.3 58 0.0013 22.4 1.5 18 162-179 3-20 (68)
274 PRK14155 heat shock protein Gr 22.3 2E+02 0.0043 24.6 5.1 34 152-185 18-51 (208)
275 KOG1962 B-cell receptor-associ 22.2 1.1E+02 0.0023 26.6 3.4 25 157-181 175-199 (216)
276 PF11808 DUF3329: Domain of un 22.2 1.1E+02 0.0023 22.4 3.0 13 198-210 17-29 (90)
277 TIGR03007 pepcterm_ChnLen poly 22.2 4.9E+02 0.011 24.5 8.3 20 195-214 415-434 (498)
278 PF14197 Cep57_CLD_2: Centroso 22.2 2.7E+02 0.0059 19.4 5.0 25 157-181 43-67 (69)
279 PF09527 ATPase_gene1: Putativ 22.0 1.4E+02 0.0031 19.4 3.3 21 197-217 10-30 (55)
280 PRK15246 fimbrial assembly cha 22.0 2.4E+02 0.0052 24.4 5.6 39 30-72 154-192 (233)
281 COG4317 Uncharacterized protei 21.9 81 0.0018 23.2 2.2 16 196-211 30-45 (93)
282 PF11027 DUF2615: Protein of u 21.8 1.3E+02 0.0027 23.0 3.4 23 190-212 51-73 (103)
283 PF03168 LEA_2: Late embryogen 21.8 2.9E+02 0.0062 19.3 6.6 46 30-75 1-52 (101)
284 PRK01614 tatE twin arginine tr 21.7 95 0.002 22.9 2.5 16 191-206 3-18 (85)
285 PRK01203 prefoldin subunit alp 21.7 1.6E+02 0.0035 23.4 4.1 25 158-182 4-28 (130)
286 PF12097 DUF3573: Protein of u 21.6 1.4E+02 0.003 27.7 4.2 26 158-183 39-64 (383)
287 PF07798 DUF1640: Protein of u 21.5 2.2E+02 0.0047 23.3 5.1 13 201-213 160-172 (177)
288 TIGR02186 alph_Pro_TM conserve 21.5 77 0.0017 28.2 2.5 25 192-216 235-259 (261)
289 PHA02657 hypothetical protein; 21.5 1.2E+02 0.0026 22.4 3.1 21 194-214 31-51 (95)
290 PF11446 DUF2897: Protein of u 21.5 1E+02 0.0022 20.8 2.5 23 196-218 6-28 (55)
291 PF13829 DUF4191: Domain of un 21.4 1.8E+02 0.0038 25.3 4.6 21 196-216 30-50 (224)
292 COG4836 Predicted membrane pro 21.3 1.4E+02 0.0031 21.3 3.3 23 190-212 37-59 (77)
293 PRK14872 rod shape-determining 21.2 1.4E+02 0.003 27.6 4.1 24 156-179 59-82 (337)
294 KOG2678 Predicted membrane pro 21.0 3.2E+02 0.0068 23.9 6.0 6 178-183 204-209 (244)
295 PF07233 DUF1425: Protein of u 21.0 3.4E+02 0.0073 19.8 8.5 48 24-71 23-77 (94)
296 PRK14141 heat shock protein Gr 21.0 2.5E+02 0.0054 24.1 5.4 33 153-185 37-69 (209)
297 PF03904 DUF334: Domain of unk 21.0 3.8E+02 0.0082 23.4 6.5 16 161-176 120-135 (230)
298 PF13373 DUF2407_C: DUF2407 C- 20.9 71 0.0015 25.6 2.0 20 195-214 86-105 (140)
299 PF04678 DUF607: Protein of un 20.9 2E+02 0.0044 23.7 4.8 20 155-174 65-84 (180)
300 PRK14011 prefoldin subunit alp 20.9 1.9E+02 0.0041 23.3 4.4 30 154-183 3-32 (144)
301 PF13974 YebO: YebO-like prote 20.9 72 0.0016 23.2 1.8 17 196-212 3-19 (80)
302 PF06657 Cep57_MT_bd: Centroso 20.8 3.1E+02 0.0068 19.6 5.2 29 152-180 15-43 (79)
303 PRK03625 tatE twin arginine tr 20.8 1E+02 0.0022 21.6 2.5 16 191-206 3-18 (67)
304 PF08041 PetM: PetM family of 20.7 1.6E+02 0.0034 17.6 2.9 15 197-211 10-24 (31)
305 KOG3498 Preprotein translocase 20.7 3E+02 0.0066 19.3 4.7 20 195-215 39-58 (67)
306 PF13805 Pil1: Eisosome compon 20.6 3.6E+02 0.0077 24.2 6.4 26 190-215 198-225 (271)
307 PRK04598 tatA twin arginine tr 20.5 1E+02 0.0022 22.5 2.5 16 191-206 3-18 (81)
308 TIGR01005 eps_transp_fam exopo 20.5 5.8E+02 0.013 25.6 8.8 21 194-214 431-451 (754)
309 PRK02944 OxaA-like protein pre 20.5 5E+02 0.011 22.7 7.4 16 170-185 110-125 (255)
310 KOG3156 Uncharacterized membra 20.4 2.2E+02 0.0047 24.7 4.8 22 161-182 116-137 (220)
311 KOG4010 Coiled-coil protein TP 20.4 1.5E+02 0.0033 25.2 3.8 18 158-175 48-65 (208)
312 PRK09918 putative fimbrial cha 20.4 2.1E+02 0.0045 24.6 4.9 42 30-73 156-200 (230)
313 PF10226 DUF2216: Uncharacteri 20.4 2.3E+02 0.005 24.1 4.9 24 158-181 52-75 (195)
314 COG3354 FlaG Putative archaeal 20.3 3.1E+02 0.0067 22.4 5.4 56 13-69 57-124 (154)
315 PF07407 Seadorna_VP6: Seadorn 20.3 1.1E+02 0.0023 28.4 3.1 23 155-177 40-62 (420)
316 PF02096 60KD_IMP: 60Kd inner 20.3 3.6E+02 0.0079 22.0 6.3 16 170-185 50-65 (198)
317 PF05552 TM_helix: Conserved T 20.3 1E+02 0.0023 20.0 2.4 18 195-212 19-36 (53)
318 PRK01833 tatA twin arginine tr 20.2 1.1E+02 0.0023 22.0 2.5 16 191-206 3-18 (74)
319 PRK01470 tatA twin arginine tr 20.1 1.1E+02 0.0024 20.3 2.4 16 191-206 2-17 (51)
320 PRK14161 heat shock protein Gr 20.0 2.4E+02 0.0051 23.5 5.0 31 155-185 27-57 (178)
321 TIGR03017 EpsF chain length de 20.0 6.8E+02 0.015 23.1 8.7 22 194-215 397-418 (444)
No 1
>COG5066 SCS2 VAMP-associated protein involved in inositol metabolism [Intracellular trafficking and secretion]
Probab=99.95 E-value=3.2e-28 Score=203.26 Aligned_cols=119 Identities=38% Similarity=0.614 Sum_probs=106.5
Q ss_pred EEEecCeeEEeeecCceeEeEEEEEcCCCCeEEEEEEeCCCCcEEEeCCeeeeCCCCeEEEEEEeccccCCC-CCCCCCC
Q 027214 10 ISVHPEELKFIFELEKQGFCDLKVINNTEHHVAFKVKTTSPKKYFVRPNTGVVQPWDSCIIRVTLQAQRESP-PDMQCKD 88 (226)
Q Consensus 10 L~i~P~eL~F~~~~~~~~~~~l~L~N~s~~~vaFKVKTT~p~~Y~VrP~~G~I~P~~s~~I~V~l~~~~~~p-~~~~~~d 88 (226)
+.|+|. +.|..|+++..++.+.|.|++..+|+||||||+|+.||||||.|+|+|++++.|.|++|+..+.| +|++|+|
T Consensus 3 veisp~-~~fy~Plt~~ske~~sv~NnspepvgfKVKTTaPK~YcVRPN~g~Iep~stv~VeVilq~l~eEpapdfKCrd 81 (242)
T COG5066 3 VEISPQ-TTFYVPLTNKSKEMFSVQNNSPEPVGFKVKTTAPKDYCVRPNMGLIEPMSTVEVEVILQGLTEEPAPDFKCRD 81 (242)
T ss_pred eEecCc-eEEecccccccceeeEeecCCCCceeEEeeccCCcceeEcCCCceeccCCeeEEEEEeeccccCCCCCccccc
Confidence 567775 45666899999999999999999999999999999999999999999999999999999998777 7999999
Q ss_pred eEEEEEEecCCCCCCCCCCCCcccccCCCcceEEEeEEEEeC
Q 027214 89 KFLLQSTIVPSNTDVDDLPPDTFNKDSGKTIEECKLRVVYVS 130 (226)
Q Consensus 89 KFlVqs~~~~~~~~~~d~~~~~f~k~~~~~i~~~kL~v~~~~ 130 (226)
|||||+...+...+..|+ .+.|....+.-+.+.||||+|..
T Consensus 82 KFLiqs~~~~~~l~g~d~-ad~wt~~sk~~i~~rkIrcvyse 122 (242)
T COG5066 82 KFLIQSYRFDWRLSGSDF-ADHWTSSSKKPIWTRKIRCVYSE 122 (242)
T ss_pred eeEEEEeccChhhccchH-HHHHHhhccccchhhheeEEeec
Confidence 999999999987766677 47777766777999999999984
No 2
>KOG0439 consensus VAMP-associated protein involved in inositol metabolism [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=7.7e-27 Score=199.05 Aligned_cols=128 Identities=42% Similarity=0.635 Sum_probs=113.5
Q ss_pred CCCccEEEecC-eeEEeeecCceeEeEEEEEcCCCCeEEEEEEeCCCCcEEEeCCeeeeCCCCeEEEEEEeccccCCCCC
Q 027214 5 GGNQLISVHPE-ELKFIFELEKQGFCDLKVINNTEHHVAFKVKTTSPKKYFVRPNTGVVQPWDSCIIRVTLQAQRESPPD 83 (226)
Q Consensus 5 ~~~~lL~i~P~-eL~F~~~~~~~~~~~l~L~N~s~~~vaFKVKTT~p~~Y~VrP~~G~I~P~~s~~I~V~l~~~~~~p~~ 83 (226)
.....|.|+|. +|.|.+++++++++.|+|+|+++.++|||||||+|++||||||.|+|.||++++|.|.+|++...|.|
T Consensus 4 ~~~~~l~i~P~~~l~F~~~~~~~~~~~l~l~N~t~~~vaFKvktT~p~~y~VrP~~G~i~p~~t~~i~v~~q~~~~~P~d 83 (218)
T KOG0439|consen 4 ETESLLEIEPSDELVFPLPLNEQVKCSLTLKNPTKLRVAFKVKTTAPKLYCVRPNGGVIDPGSTVEIEVTHQPFEKSPPD 83 (218)
T ss_pred cccCccccCCCceEEeccCCCceEEEEEEEecCCCCceEEEEEcCCCCeEEEcCCcceECCCCcEEEEEEeccCccCchh
Confidence 34588999995 99999999988999999999999999999999999999999999999999999999999997677889
Q ss_pred CCCCCeEEEEEEecCCCCCCCCCCCCcccccC--CCcceEEEeEEEEeCCCCC
Q 027214 84 MQCKDKFLLQSTIVPSNTDVDDLPPDTFNKDS--GKTIEECKLRVVYVSPSSA 134 (226)
Q Consensus 84 ~~~~dKFlVqs~~~~~~~~~~d~~~~~f~k~~--~~~i~~~kL~v~~~~p~~~ 134 (226)
++|+|||+||++.++.+ +..++ .+.|.... +....+.+++|.|..|..+
T Consensus 84 ~~~r~kF~v~~~~~~~~-~~~~~-~~~~~~~k~~~~~~~~~k~~~~~~~~~~~ 134 (218)
T KOG0439|consen 84 FKSRHKFLIQSLKAPPP-TTRDV-VDLWKFQKETPKESFETKLRVVFVAPTET 134 (218)
T ss_pred hcccceEEEEEEecCCc-cccch-hhhccccccccccccceeeEEEeeCCCCC
Confidence 89999999999999987 33333 35565544 7889999999999998876
No 3
>PF00635 Motile_Sperm: MSP (Major sperm protein) domain; InterPro: IPR000535 Major sperm proteins (MSP) are central components in molecular interactions underlying sperm motility in Caenorhabditis elegans, whose sperm employ an amoebae-like crawling motion using a MSP-containing lamellipod, rather than the flagellar-based swimming motion associated with other sperm. These proteins oligomerise to form an extensive filament system that extends from sperm villipoda, along the leading edge of the pseudopod. About 30 MSP isoforms may exist in C. elegans. MSPs form a fibrous network, whereby MSP dimers form helical subfilaments that coil around one another to produce filaments, which in turn form supercoils to produce bundles. The crystal structure of MSP from C. elegans reveals an immunoglobulin (Ig)-like seven-stranded beta sandwich fold []. ; GO: 0005198 structural molecule activity; PDB: 1MSP_A 3MSP_B 2BVU_B 2MSP_C 1Z9O_F 1Z9L_A 3IKK_A 1WIC_A 2CRI_A 2RR3_A ....
Probab=99.90 E-value=1.5e-23 Score=159.51 Aligned_cols=91 Identities=40% Similarity=0.686 Sum_probs=76.8
Q ss_pred EEEecC-eeEEeeecCceeEeEEEEEcCCCCeEEEEEEeCCCCcEEEeCCeeeeCCCCeEEEEEEeccccCCCCCCCCCC
Q 027214 10 ISVHPE-ELKFIFELEKQGFCDLKVINNTEHHVAFKVKTTSPKKYFVRPNTGVVQPWDSCIIRVTLQAQRESPPDMQCKD 88 (226)
Q Consensus 10 L~i~P~-eL~F~~~~~~~~~~~l~L~N~s~~~vaFKVKTT~p~~Y~VrP~~G~I~P~~s~~I~V~l~~~~~~p~~~~~~d 88 (226)
|.|+|. .|.|++++++...+.|+|+|+++++||||||||+|.+|+|+|+.|+|+||+++.|.|++++....+.. ..+|
T Consensus 2 l~v~P~~~i~F~~~~~~~~~~~l~l~N~s~~~i~fKiktt~~~~y~v~P~~G~i~p~~~~~i~I~~~~~~~~~~~-~~~d 80 (109)
T PF00635_consen 2 LSVEPSELIFFNAPFNKQQSCELTLTNPSDKPIAFKIKTTNPNRYRVKPSYGIIEPGESVEITITFQPFDFEPSN-KKKD 80 (109)
T ss_dssp CEEESSSEEEEESSTSS-EEEEEEEEE-SSSEEEEEEEES-TTTEEEESSEEEE-TTEEEEEEEEE-SSSTTTTS-TSSE
T ss_pred eEEeCCcceEEcCCCCceEEEEEEEECCCCCcEEEEEEcCCCceEEecCCCEEECCCCEEEEEEEEEecccCCCC-CCCC
Confidence 689998 89999999889999999999999999999999999999999999999999999999999997554433 2399
Q ss_pred eEEEEEEecCCCC
Q 027214 89 KFLLQSTIVPSNT 101 (226)
Q Consensus 89 KFlVqs~~~~~~~ 101 (226)
||+|+++.++++.
T Consensus 81 kf~I~~~~~~~~~ 93 (109)
T PF00635_consen 81 KFLIQSIVVPDNA 93 (109)
T ss_dssp EEEEEEEEE-TT-
T ss_pred EEEEEEEEcCCCc
Confidence 9999999998775
No 4
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=98.62 E-value=7.9e-07 Score=66.71 Aligned_cols=70 Identities=21% Similarity=0.340 Sum_probs=61.3
Q ss_pred ccEEEecCeeEEeee-cCceeEeEEEEEcCCCCeEEEEEEeCC--CCcEEEeCCeeeeCCCCeEEEEEEeccc
Q 027214 8 QLISVHPEELKFIFE-LEKQGFCDLKVINNTEHHVAFKVKTTS--PKKYFVRPNTGVVQPWDSCIIRVTLQAQ 77 (226)
Q Consensus 8 ~lL~i~P~eL~F~~~-~~~~~~~~l~L~N~s~~~vaFKVKTT~--p~~Y~VrP~~G~I~P~~s~~I~V~l~~~ 77 (226)
+.|.++|.+|.|-.= .+......++|+|.+..+..|+|+.-. ...|.|.|..|.|.||+++++.|++.+.
T Consensus 2 P~l~v~P~~ldFG~v~~g~~~~~~v~l~N~s~~p~~f~v~~~~~~~~~~~v~~~~g~l~PG~~~~~~V~~~~~ 74 (102)
T PF14874_consen 2 PTLEVSPKELDFGNVFVGQTYSRTVTLTNTSSIPARFRVRQPESLSSFFSVEPPSGFLAPGESVELEVTFSPT 74 (102)
T ss_pred CEEEEeCCEEEeeEEccCCEEEEEEEEEECCCCCEEEEEEeCCcCCCCEEEECCCCEECCCCEEEEEEEEEeC
Confidence 468999999999764 456778899999999999999998654 4689999999999999999999999953
No 5
>PF00345 PapD_N: Pili and flagellar-assembly chaperone, PapD N-terminal domain; InterPro: IPR016147 Most Gram-negative bacteria possess a supramolecular structure - the pili - on their surface, which mediates attachment to specific receptors. Many interactive subunits are required to assemble pili, but their assembly only takes place after translocation across the cytoplasmic membrane. Periplasmic chaperones assist pili assembly by binding to the subunits, thereby preventing premature aggregation [, ]. Pili chaperones are structurally, and possibly evolutionarily, related to the immunoglobulin superfamily [, ]: they contain two globular domains, with a topology identical to an immunoglobulin fold. This entry represents the N-terminal domain of pili assembly chaperone, and has a beta-sandwich fold consisting of seven strands in two sheets with a Greek key topology.; GO: 0007047 cellular cell wall organization, 0030288 outer membrane-bounded periplasmic space; PDB: 2CO6_B 2CO7_B 1L4I_B 3GFU_A 3F65_F 3F6L_A 3F6I_A 3GEW_B 3DSN_D 2OS7_B ....
Probab=97.23 E-value=0.0048 Score=47.66 Aligned_cols=83 Identities=22% Similarity=0.326 Sum_probs=61.4
Q ss_pred EEEecCeeEEeeecCceeEeEEEEEcCCCCeEEEEEEeCC---C------CcEEEeCCeeeeCCCCeEEEEEEeccccCC
Q 027214 10 ISVHPEELKFIFELEKQGFCDLKVINNTEHHVAFKVKTTS---P------KKYFVRPNTGVVQPWDSCIIRVTLQAQRES 80 (226)
Q Consensus 10 L~i~P~eL~F~~~~~~~~~~~l~L~N~s~~~vaFKVKTT~---p------~~Y~VrP~~G~I~P~~s~~I~V~l~~~~~~ 80 (226)
|.|+|..+.|... .....++|+|.++.++.+.+.... . ..|.|-|+.-.|+||++..|.| +... ..
T Consensus 2 i~i~~trii~~~~---~~~~~i~v~N~~~~~~~vq~~v~~~~~~~~~~~~~~~~vsPp~~~L~pg~~q~vRv-~~~~-~~ 76 (122)
T PF00345_consen 2 IQISPTRIIFNES---QRSASITVTNNSDQPYLVQVWVYDQDDEDEDEPTDPFIVSPPIFRLEPGESQTVRV-YRGS-KL 76 (122)
T ss_dssp EEESSSEEEEETT---SSEEEEEEEESSSSEEEEEEEEEETTSTTSSSSSSSEEEESSEEEEETTEEEEEEE-EECS-GS
T ss_pred EEEccEEEEEeCC---CCEEEEEEEcCCCCcEEEEEEEEcCCCcccccccccEEEeCCceEeCCCCcEEEEE-EecC-CC
Confidence 6788998888752 457899999999999999988775 1 2799999999999999999999 4432 33
Q ss_pred CCCCCCCCeEEEEEEecCC
Q 027214 81 PPDMQCKDKFLLQSTIVPS 99 (226)
Q Consensus 81 p~~~~~~dKFlVqs~~~~~ 99 (226)
+.+. ...|.+....+|.
T Consensus 77 ~~~~--E~~yrl~~~~iP~ 93 (122)
T PF00345_consen 77 PIDR--ESLYRLSFREIPP 93 (122)
T ss_dssp -SSS---EEEEEEEEEEES
T ss_pred CCCc--eEEEEEEEEEEec
Confidence 4432 3344555555554
No 6
>PRK10884 SH3 domain-containing protein; Provisional
Probab=95.37 E-value=0.04 Score=47.08 Aligned_cols=59 Identities=22% Similarity=0.267 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cCCCCchHHHH-HHHHHHHHHHHHHHhhh
Q 027214 156 LQRLKDERDAAVRQTQLLQQDLDMLKRRGQR-KGVRGFSLMFA-AFVGLIGIMVGLILNLL 214 (226)
Q Consensus 156 i~~L~eE~~~~~~en~~L~~el~~lr~~~~~-~~~~g~s~~~v-~lv~lla~~lG~~l~~~ 214 (226)
+.+|.+|.+++.+|+..+++|.+.++..... ....-+.+|+. -+|+++|+|||.++..|
T Consensus 134 ~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~~~~wf~~Gg~v~~~GlllGlilp~l 194 (206)
T PRK10884 134 INGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTIIMQWFMYGGGVAGIGLLLGLLLPHL 194 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccc
Confidence 3445555555555555555555444433221 11112234433 77888888888887665
No 7
>PRK09918 putative fimbrial chaperone protein; Provisional
Probab=94.91 E-value=0.37 Score=41.66 Aligned_cols=85 Identities=18% Similarity=0.175 Sum_probs=62.4
Q ss_pred ccEEEecCeeEEeeecCceeEeEEEEEcCCCCeEEEEEEeCCC-----CcEEEeCCeeeeCCCCeEEEEEEeccccCCCC
Q 027214 8 QLISVHPEELKFIFELEKQGFCDLKVINNTEHHVAFKVKTTSP-----KKYFVRPNTGVVQPWDSCIIRVTLQAQRESPP 82 (226)
Q Consensus 8 ~lL~i~P~eL~F~~~~~~~~~~~l~L~N~s~~~vaFKVKTT~p-----~~Y~VrP~~G~I~P~~s~~I~V~l~~~~~~p~ 82 (226)
.-|.+.|..+.|... .....++|.|.++.++......... .-|.|.|+.-.|+||+...|.|.... ..|.
T Consensus 24 a~v~l~~tRvi~~~~---~~~~si~v~N~~~~p~lvQ~wv~~~~~~~~~~fivtPPl~rl~pg~~q~vRii~~~--~lp~ 98 (230)
T PRK09918 24 AGMVPETSVVIVEES---DGEGSINVKNTDSNPILLYTTLVDLPEDKSKLLLVTPPVARVEPGQSQQVRFILKS--GSPL 98 (230)
T ss_pred eeEEEccEEEEEECC---CCeEEEEEEcCCCCcEEEEEEEecCCCCCCCCEEEcCCeEEECCCCceEEEEEECC--CCCC
Confidence 457788888888753 4567999999999887766655332 25999999999999999999999774 2444
Q ss_pred CCCCCCeEEEEEEecCC
Q 027214 83 DMQCKDKFLLQSTIVPS 99 (226)
Q Consensus 83 ~~~~~dKFlVqs~~~~~ 99 (226)
|. ..-|.+....+|+
T Consensus 99 dr--Es~f~l~v~~IP~ 113 (230)
T PRK09918 99 NT--EHLLRVSFEGVPP 113 (230)
T ss_pred Ce--eEEEEEEEEEcCC
Confidence 42 2336666666664
No 8
>PRK09926 putative chaperone protein EcpD; Provisional
Probab=94.24 E-value=0.45 Score=41.59 Aligned_cols=88 Identities=14% Similarity=0.197 Sum_probs=64.8
Q ss_pred CccEEEecCeeEEeeecCceeEeEEEEEcCCCCeEEEEEEeCCCC----------cEEEeCCeeeeCCCCeEEEEEEecc
Q 027214 7 NQLISVHPEELKFIFELEKQGFCDLKVINNTEHHVAFKVKTTSPK----------KYFVRPNTGVVQPWDSCIIRVTLQA 76 (226)
Q Consensus 7 ~~lL~i~P~eL~F~~~~~~~~~~~l~L~N~s~~~vaFKVKTT~p~----------~Y~VrP~~G~I~P~~s~~I~V~l~~ 76 (226)
..-|.|+|..+.|+.. .....++|.|.++.++.-.......+ -|.|-|+.--|+||+...|.|....
T Consensus 24 ~A~i~l~~TRvI~~~~---~~~~sv~l~N~~~~p~LvQ~Wvd~~~~~~~p~~~~~pfivtPPl~rl~p~~~q~lRIi~~~ 100 (246)
T PRK09926 24 IADIVISGTRIIYKSD---QKDVNVRLENKGNNPLLVQSWLDTGDDNAEPGSIKVPFTATPPVSRIDPKRGQTIKLMYTA 100 (246)
T ss_pred eeeEEeCceEEEEeCC---CceEEEEEEeCCCCcEEEEEEecCCCCccCccccCCCEEEcCCeEEECCCCccEEEEEeCC
Confidence 3558889988999863 45679999999998887776664322 3999999999999999999999875
Q ss_pred ccCCCCCCCCCCeEEEEEEecCC
Q 027214 77 QRESPPDMQCKDKFLLQSTIVPS 99 (226)
Q Consensus 77 ~~~~p~~~~~~dKFlVqs~~~~~ 99 (226)
....|.|. .--|.+..-.+|+
T Consensus 101 ~~~lP~Dr--ESlf~lnv~eIP~ 121 (246)
T PRK09926 101 STALPKDR--ESVFWFNVLEVPP 121 (246)
T ss_pred CCCCCCCc--eEEEEEEeeecCC
Confidence 31355542 2336666666665
No 9
>PF14646 MYCBPAP: MYCBP-associated protein family
Probab=94.20 E-value=0.3 Score=45.90 Aligned_cols=97 Identities=13% Similarity=0.244 Sum_probs=70.4
Q ss_pred eeEEeeecCceeEeEEE-EEcCCCCeEEEEEEeCC------------CCcEEEeCCeeeeCCCCeEEEEEEeccccCCCC
Q 027214 16 ELKFIFELEKQGFCDLK-VINNTEHHVAFKVKTTS------------PKKYFVRPNTGVVQPWDSCIIRVTLQAQRESPP 82 (226)
Q Consensus 16 eL~F~~~~~~~~~~~l~-L~N~s~~~vaFKVKTT~------------p~~Y~VrP~~G~I~P~~s~~I~V~l~~~~~~p~ 82 (226)
.|.|....+......|. |.|.+..-|-|..+--. ...|......|+|.||++..|.|+.++.. +
T Consensus 238 ~l~Fe~~p~e~~~~~v~~l~N~Gt~~I~y~W~~~~~~~~~~~~~~~~~~~F~Fd~~~gvilPGe~~~~~~~F~s~~--~- 314 (426)
T PF14646_consen 238 RLTFECHPGERVSKEVVRLENNGTTAIYYSWRRVPFFKNFGSLFRAQDQRFYFDTSSGVILPGETRNFPFMFKSRK--V- 314 (426)
T ss_pred EEEEEcccCceeeEEEEEEecCCceEEEEEEEecccccccchhccccCCeEEEeCCCCEECCCceEEEEEEEeCCC--c-
Confidence 68898877766666777 99999999999876543 35789999999999999999999999852 1
Q ss_pred CCCCCCeEEEEEEecCCCCCCCCCCCCcccccCCCcceEEEeEEEEeCCC
Q 027214 83 DMQCKDKFLLQSTIVPSNTDVDDLPPDTFNKDSGKTIEECKLRVVYVSPS 132 (226)
Q Consensus 83 ~~~~~dKFlVqs~~~~~~~~~~d~~~~~f~k~~~~~i~~~kL~v~~~~p~ 132 (226)
...+....+.+.+ .+|.. .....+|+.+...|.
T Consensus 315 -Gif~E~W~L~t~P------------~l~~~----~~l~v~L~G~~~~~~ 347 (426)
T PF14646_consen 315 -GIFKERWELRTFP------------PLFGG----ASLTVRLHGVCTPPD 347 (426)
T ss_pred -eEEEEEEEEEEec------------cccCC----CceEEEEEEEEcCch
Confidence 1345556555522 12331 225678888877664
No 10
>PRK15249 fimbrial chaperone protein StbB; Provisional
Probab=93.90 E-value=0.64 Score=40.84 Aligned_cols=88 Identities=15% Similarity=0.218 Sum_probs=62.2
Q ss_pred CccEEEecCeeEEeeecCceeEeEEEEEcCCCCeEEEEEEeCCCC-----------cEEEeCCeeeeCCCCeEEEEEEec
Q 027214 7 NQLISVHPEELKFIFELEKQGFCDLKVINNTEHHVAFKVKTTSPK-----------KYFVRPNTGVVQPWDSCIIRVTLQ 75 (226)
Q Consensus 7 ~~lL~i~P~eL~F~~~~~~~~~~~l~L~N~s~~~vaFKVKTT~p~-----------~Y~VrP~~G~I~P~~s~~I~V~l~ 75 (226)
..-|.|.|..+.|+.. .....++|.|.++.++.-...+.+.+ -|.|.|+.--|+||+...|.|...
T Consensus 27 ~A~l~l~~TRviy~~~---~~~~sl~l~N~~~~p~LvQsWv~~~~~~~~p~~~~~~pFivtPPlfrl~p~~~q~lRI~~~ 103 (253)
T PRK15249 27 WASVTILGSRIIYPST---ASSVDVQLKNNDAIPYIVQTWFDDGDMNTSPENSSAMPFIATPPVFRIQPKAGQVVRVIYN 103 (253)
T ss_pred eeEEEeCceEEEEeCC---CcceeEEEEcCCCCcEEEEEEEeCCCCCCCccccccCcEEEcCCeEEecCCCceEEEEEEc
Confidence 3558899999999753 35678999999988776665543211 399999999999999999999987
Q ss_pred cccCCCCCCCCCCeEEEEEEecCC
Q 027214 76 AQRESPPDMQCKDKFLLQSTIVPS 99 (226)
Q Consensus 76 ~~~~~p~~~~~~dKFlVqs~~~~~ 99 (226)
.....|.|. .--|.+..-.+|+
T Consensus 104 ~~~~lP~DR--ESlf~lnv~eIP~ 125 (253)
T PRK15249 104 NTKKLPQDR--ESVFWFNVLQVPP 125 (253)
T ss_pred CCCCCCCCc--eEEEEEEeeecCC
Confidence 522455552 2335555555554
No 11
>PF07610 DUF1573: Protein of unknown function (DUF1573); InterPro: IPR011467 These hypothetical proteins from bacteria, such as Rhodopirellula baltica, Bacteroides thetaiotaomicron and Porphyromonas gingivalis, share a region of conserved sequence towards their N termini.
Probab=92.90 E-value=0.65 Score=29.77 Aligned_cols=43 Identities=21% Similarity=0.168 Sum_probs=34.9
Q ss_pred EEEEcCCCCeEE-EEEEeCCCCcEEEeCCeeeeCCCCeEEEEEEe
Q 027214 31 LKVINNTEHHVA-FKVKTTSPKKYFVRPNTGVVQPWDSCIIRVTL 74 (226)
Q Consensus 31 l~L~N~s~~~va-FKVKTT~p~~Y~VrP~~G~I~P~~s~~I~V~l 74 (226)
.+++|.++.++. .+|+ |+=+...+......|.||++..|.|+.
T Consensus 2 F~~~N~g~~~L~I~~v~-tsCgCt~~~~~~~~i~PGes~~i~v~y 45 (45)
T PF07610_consen 2 FEFTNTGDSPLVITDVQ-TSCGCTTAEYSKKPIAPGESGKIKVTY 45 (45)
T ss_pred EEEEECCCCcEEEEEee-EccCCEEeeCCcceECCCCEEEEEEEC
Confidence 578999987765 4565 457888899999999999999999873
No 12
>PRK15295 fimbrial assembly chaperone SthB; Provisional
Probab=92.71 E-value=1.5 Score=37.85 Aligned_cols=86 Identities=17% Similarity=0.158 Sum_probs=60.6
Q ss_pred ccEEEecCeeEEeeecCceeEeEEEEEcCCCCeEEEEEEeCC-------CCcEEEeCCeeeeCCCCeEEEEEEeccccCC
Q 027214 8 QLISVHPEELKFIFELEKQGFCDLKVINNTEHHVAFKVKTTS-------PKKYFVRPNTGVVQPWDSCIIRVTLQAQRES 80 (226)
Q Consensus 8 ~lL~i~P~eL~F~~~~~~~~~~~l~L~N~s~~~vaFKVKTT~-------p~~Y~VrP~~G~I~P~~s~~I~V~l~~~~~~ 80 (226)
.-|.+++..+.|+.. .....++|.|.++.++.=...... ..-|.|.|+.--|+||+...|.|..... ..
T Consensus 19 A~i~l~~TRvI~~~~---~~~~si~i~N~~~~p~LvQsWv~~~~~~~~~~~pFivtPPl~rl~p~~~q~lRI~~~~~-~L 94 (226)
T PRK15295 19 ASIVVGGTRLVFDGN---NDESSINVENKDSKANLVQSWLSVVDPQVTNKQAFIITPPLFRLDAGQKNSIRVIRSGA-PL 94 (226)
T ss_pred ccEEeCceEEEEeCC---CceeEEEEEeCCCCcEEEEEEEeCCCCCCCCCCCEEEcCCeEEECCCCceEEEEEECCC-CC
Confidence 457888888888763 346799999999886543333321 1259999999999999999999998752 34
Q ss_pred CCCCCCCCeEEEEEEecCC
Q 027214 81 PPDMQCKDKFLLQSTIVPS 99 (226)
Q Consensus 81 p~~~~~~dKFlVqs~~~~~ 99 (226)
|.|. ..-|.+....+|+
T Consensus 95 P~Dr--Eslf~lnv~~IP~ 111 (226)
T PRK15295 95 PADR--ESMYWLNIKGIPS 111 (226)
T ss_pred CCCc--eEEEEEEEEEcCC
Confidence 5542 2336666666665
No 13
>PRK15246 fimbrial assembly chaperone StbE; Provisional
Probab=92.59 E-value=2.4 Score=36.79 Aligned_cols=87 Identities=16% Similarity=0.229 Sum_probs=62.5
Q ss_pred ccEEEecCeeEEeeecCceeEeEEEEEcCCCCeEEEEEEeCCC------C----cEEEeCCeeeeCCCCeEEEEEEeccc
Q 027214 8 QLISVHPEELKFIFELEKQGFCDLKVINNTEHHVAFKVKTTSP------K----KYFVRPNTGVVQPWDSCIIRVTLQAQ 77 (226)
Q Consensus 8 ~lL~i~P~eL~F~~~~~~~~~~~l~L~N~s~~~vaFKVKTT~p------~----~Y~VrP~~G~I~P~~s~~I~V~l~~~ 77 (226)
.-|.|++..+.|+.. .....++|.|.++.++.=....... . -|.|-|+.--|+||+...|.|.....
T Consensus 10 A~v~l~~TRvI~~~~---~~~~sv~l~N~~~~p~LvQsWvd~~~~~~~p~~~~~pFivtPPlfrl~~~~~~~lRI~~~~~ 86 (233)
T PRK15246 10 AAVNIDRTRIIFASD---DVAQSLTLSNDNTTPMLLQVWTDAGNIDASPDNSKTPLVALPPVFKMQPGELRTLRLLLSSR 86 (233)
T ss_pred EEEEECceEEEEcCC---CceEEEEEEeCCCCcEEEEEEEeCCCCccCcccccCcEEECCcceEECCCCceEEEEEECCC
Confidence 458888888999863 4567999999998875544433221 1 49999999999999999999998753
Q ss_pred cCCCCCCCCCCeEEEEEEecCC
Q 027214 78 RESPPDMQCKDKFLLQSTIVPS 99 (226)
Q Consensus 78 ~~~p~~~~~~dKFlVqs~~~~~ 99 (226)
...|.|. .--|-+....+|+
T Consensus 87 ~~LP~DR--ESlf~lnv~~IP~ 106 (233)
T PRK15246 87 QQLATDR--ESLFWLNIYQIPP 106 (233)
T ss_pred CCCCCCc--eEEEEEEEEEcCC
Confidence 3455542 2346666666665
No 14
>PRK11385 putativi pili assembly chaperone; Provisional
Probab=92.56 E-value=2.1 Score=37.25 Aligned_cols=88 Identities=17% Similarity=0.205 Sum_probs=62.1
Q ss_pred CccEEEecCeeEEeeecCceeEeEEEEEcCCCCeEEEEEEeC------------CCCcEEEeCCeeeeCCCCeEEEEEEe
Q 027214 7 NQLISVHPEELKFIFELEKQGFCDLKVINNTEHHVAFKVKTT------------SPKKYFVRPNTGVVQPWDSCIIRVTL 74 (226)
Q Consensus 7 ~~lL~i~P~eL~F~~~~~~~~~~~l~L~N~s~~~vaFKVKTT------------~p~~Y~VrP~~G~I~P~~s~~I~V~l 74 (226)
..-+.+++..+.|+.. .....++|.|.++++..=..... ...-|.|-|+.--|+||+...+.|..
T Consensus 25 ~A~v~l~~TRvIy~~~---~~~~sv~l~N~~~~p~LvQswv~~~~~~~~~~~~~~~~pFivtPPlfrl~p~~~q~lRIi~ 101 (236)
T PRK11385 25 QAGVVVGGTRFIFPAD---RESISILLTNTSQESWLINSKINRPTRWAGGEASTVPAPLLAAPPLILLKPGTTGTLRLLR 101 (236)
T ss_pred eeeEEeCceEEEEcCC---CceEEEEEEeCCCCcEEEEEEcccCccccCcccccccCCEEEcCCeEEECCCCceEEEEEE
Confidence 3567888888888753 45679999999988744333211 11249999999999999999999998
Q ss_pred ccccCCCCCCCCCCeEEEEEEecCC
Q 027214 75 QAQRESPPDMQCKDKFLLQSTIVPS 99 (226)
Q Consensus 75 ~~~~~~p~~~~~~dKFlVqs~~~~~ 99 (226)
......|.|. ..-|-+....+|+
T Consensus 102 ~~~~~LP~DR--ESlf~lnv~~IPp 124 (236)
T PRK11385 102 TESDILPVDR--ETLFELSIASVPS 124 (236)
T ss_pred CCCCCCCCCc--eEEEEEEEEecCC
Confidence 7532456552 3456666666665
No 15
>PRK15299 fimbrial chaperone protein StiB; Provisional
Probab=92.48 E-value=1.7 Score=37.55 Aligned_cols=86 Identities=14% Similarity=0.176 Sum_probs=62.5
Q ss_pred ccEEEecCeeEEeeecCceeEeEEEEEcCCCCeEEEEEEeCC--------CCcEEEeCCeeeeCCCCeEEEEEEeccccC
Q 027214 8 QLISVHPEELKFIFELEKQGFCDLKVINNTEHHVAFKVKTTS--------PKKYFVRPNTGVVQPWDSCIIRVTLQAQRE 79 (226)
Q Consensus 8 ~lL~i~P~eL~F~~~~~~~~~~~l~L~N~s~~~vaFKVKTT~--------p~~Y~VrP~~G~I~P~~s~~I~V~l~~~~~ 79 (226)
.-|.++|..+.|... .....++|.|.++.++.-...+.. ..-|.|.|+.--|+||+...|.|..... .
T Consensus 22 a~i~l~~TRvi~~~~---~~~~sl~l~N~~~~p~lvQsWv~~~~~~~~~~~~pfivtPPl~rl~p~~~q~lRI~~~~~-~ 97 (227)
T PRK15299 22 AGINIGTTRVIFHGD---AKDASISISNSDNVPYLIQSWAQSISETGASGDAPFMVTPPLFRLNGGQKNVLRIIRTGG-N 97 (227)
T ss_pred eeEEECceEEEEeCC---CcEEEEEEEeCCCCcEEEEEEeecCCCCCCcCCCCEEEcCCeEEECCCCccEEEEEECCC-C
Confidence 458888888888764 456799999998887666554322 1249999999999999999999997752 3
Q ss_pred CCCCCCCCCeEEEEEEecCC
Q 027214 80 SPPDMQCKDKFLLQSTIVPS 99 (226)
Q Consensus 80 ~p~~~~~~dKFlVqs~~~~~ 99 (226)
.|.|. ..-|.+....+|+
T Consensus 98 lP~Dr--Eslf~lnv~eIP~ 115 (227)
T PRK15299 98 LPEDR--ESLYWLDIKSIPS 115 (227)
T ss_pred CCCcc--eEEEEEEeEecCC
Confidence 55552 3346666666665
No 16
>PRK15211 fimbrial chaperone protein PefD; Provisional
Probab=92.34 E-value=1.2 Score=38.74 Aligned_cols=86 Identities=16% Similarity=0.172 Sum_probs=61.4
Q ss_pred ccEEEecCeeEEeeecCceeEeEEEEEcCCCCeEEEEEEeCC------CCcEEEeCCeeeeCCCCeEEEEEEeccccCCC
Q 027214 8 QLISVHPEELKFIFELEKQGFCDLKVINNTEHHVAFKVKTTS------PKKYFVRPNTGVVQPWDSCIIRVTLQAQRESP 81 (226)
Q Consensus 8 ~lL~i~P~eL~F~~~~~~~~~~~l~L~N~s~~~vaFKVKTT~------p~~Y~VrP~~G~I~P~~s~~I~V~l~~~~~~p 81 (226)
.-+.+++..+.|+.. .....++|.|.++.++.-...... ..-|.|.|+.--|+||+...|.|..... ..|
T Consensus 22 A~v~l~~TRvIy~~~---~~~~si~i~N~~~~p~LvQswv~~~~~~~~~~pFivtPPlfrl~p~~~q~lRI~~~~~-~LP 97 (229)
T PRK15211 22 AAFVLNGTRFIYDEG---RKNISFEVTNQADQTYGGQVWIDNTTQGSSTVYMVPAPPFFKVRPKEKQIIRIMKTDS-ALP 97 (229)
T ss_pred EEEEECceEEEEcCC---CceEEEEEEeCCCCcEEEEEEEecCCCCCccCCEEEcCCeEEECCCCceEEEEEECCC-CCC
Confidence 447788888888753 456799999999887554443321 1249999999999999999999998753 455
Q ss_pred CCCCCCCeEEEEEEecCC
Q 027214 82 PDMQCKDKFLLQSTIVPS 99 (226)
Q Consensus 82 ~~~~~~dKFlVqs~~~~~ 99 (226)
.|. ..-|-+....+|+
T Consensus 98 ~DR--ESlf~lnv~~IP~ 113 (229)
T PRK15211 98 KDR--ESLFWLNVQEIPP 113 (229)
T ss_pred CCc--eEEEEEEEEEcCC
Confidence 552 3446666666665
No 17
>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A.
Probab=91.72 E-value=0.97 Score=34.55 Aligned_cols=50 Identities=18% Similarity=0.220 Sum_probs=36.0
Q ss_pred EeEEEEEcCCCCeEEEEEEeCCCCcEEE-eCCee-eeCCCCeEEEEEEeccc
Q 027214 28 FCDLKVINNTEHHVAFKVKTTSPKKYFV-RPNTG-VVQPWDSCIIRVTLQAQ 77 (226)
Q Consensus 28 ~~~l~L~N~s~~~vaFKVKTT~p~~Y~V-rP~~G-~I~P~~s~~I~V~l~~~ 77 (226)
...++|.|.++++.-|.|+...+..+.+ .|... .|.||++..+.|.+...
T Consensus 34 ~Y~lkl~Nkt~~~~~~~i~~~g~~~~~l~~~~~~i~v~~g~~~~~~v~v~~p 85 (118)
T PF11614_consen 34 QYTLKLTNKTNQPRTYTISVEGLPGAELQGPENTITVPPGETREVPVFVTAP 85 (118)
T ss_dssp EEEEEEEE-SSS-EEEEEEEES-SS-EE-ES--EEEE-TT-EEEEEEEEEE-
T ss_pred EEEEEEEECCCCCEEEEEEEecCCCeEEECCCcceEECCCCEEEEEEEEEEC
Confidence 6799999999999999999998888888 66444 59999999998887764
No 18
>PRK15192 fimbrial chaperone BcfG; Provisional
Probab=90.90 E-value=4.3 Score=35.33 Aligned_cols=84 Identities=17% Similarity=0.227 Sum_probs=60.9
Q ss_pred ccEEEecCeeEEeeecCceeEeEEEEEcCCCCeEEEEEEeC----------C----CCcEEEeCCeeeeCCCCeEEEEEE
Q 027214 8 QLISVHPEELKFIFELEKQGFCDLKVINNTEHHVAFKVKTT----------S----PKKYFVRPNTGVVQPWDSCIIRVT 73 (226)
Q Consensus 8 ~lL~i~P~eL~F~~~~~~~~~~~l~L~N~s~~~vaFKVKTT----------~----p~~Y~VrP~~G~I~P~~s~~I~V~ 73 (226)
.-|.++...+.|+.. .....++|.|.++.+ |=|++. . ..-|.|-|+.--|+||+...+.|.
T Consensus 22 Agi~l~~TRvIy~~~---~k~~sv~l~N~~~~p--~LvQswv~~~~~w~~~~~~~~~~PFivtPPlfrl~p~~~~~lRI~ 96 (234)
T PRK15192 22 AGVVIGGTRFIYHAG---APALSVPVSNHSEAS--WLIDTHILPGGRWPGTKNEGNITPFVVTPPLFMLSARQENSMRVV 96 (234)
T ss_pred eeEEeCceEEEEcCC---CceEEEEEEeCCCCc--EEEEEEeccCccccccCCccccCCEEEcCCeEEECCCCceEEEEE
Confidence 447778888888763 456799999999886 555552 1 113999999999999999999999
Q ss_pred eccccCCCCCCCCCCeEEEEEEecCC
Q 027214 74 LQAQRESPPDMQCKDKFLLQSTIVPS 99 (226)
Q Consensus 74 l~~~~~~p~~~~~~dKFlVqs~~~~~ 99 (226)
.... ..|.|. .--|-+....+|+
T Consensus 97 ~~~~-~LP~DR--ESlf~lnv~~IPp 119 (234)
T PRK15192 97 YTGA-PLPADR--ESLFTLSIAAIPS 119 (234)
T ss_pred ECCC-CCCCcc--eEEEEEEEEecCC
Confidence 8753 456552 3446666666665
No 19
>PRK15208 long polar fimbrial chaperone LpfB; Provisional
Probab=90.69 E-value=3 Score=36.01 Aligned_cols=86 Identities=10% Similarity=0.209 Sum_probs=58.8
Q ss_pred ccEEEecCeeEEeeecCceeEeEEEEEcCCCC-eEEEEEEeCCC-----CcEEEeCCeeeeCCCCeEEEEEEeccccCCC
Q 027214 8 QLISVHPEELKFIFELEKQGFCDLKVINNTEH-HVAFKVKTTSP-----KKYFVRPNTGVVQPWDSCIIRVTLQAQRESP 81 (226)
Q Consensus 8 ~lL~i~P~eL~F~~~~~~~~~~~l~L~N~s~~-~vaFKVKTT~p-----~~Y~VrP~~G~I~P~~s~~I~V~l~~~~~~p 81 (226)
.-|.+.|..+.|... .....++|.|.+++ ++......... .-|.|-|+.--|+||+...|.|..... ..|
T Consensus 21 agv~l~~TRvI~~~~---~~~~si~i~N~~~~~~~LvQsWv~~~~~~~~~pfivtPPl~rl~p~~~q~lRIi~~~~-~lP 96 (228)
T PRK15208 21 GGVALSSTRVIYDGS---KKEASLTVNNKSKTEEFLIQSWIDDANGNKKTPFIITPPLFKLDPTKNNVLRIVNITN-TLP 96 (228)
T ss_pred ccEEeCceEEEEeCC---CceEEEEEEeCCCCCcEEEEEEEECCCCCccCCEEECCCeEEECCCCccEEEEEECCC-CCC
Confidence 458888988999763 45679999999863 33333222211 139999999999999999999997652 345
Q ss_pred CCCCCCCeEEEEEEecCC
Q 027214 82 PDMQCKDKFLLQSTIVPS 99 (226)
Q Consensus 82 ~~~~~~dKFlVqs~~~~~ 99 (226)
.|. .--|.+..-.+|+
T Consensus 97 ~Dr--ESlf~lnv~eIP~ 112 (228)
T PRK15208 97 QDR--ESVYWINVKAIPA 112 (228)
T ss_pred CCe--eEEEEEEEEEcCC
Confidence 542 2335555556664
No 20
>PRK15290 lfpB fimbrial chaperone protein; Provisional
Probab=90.42 E-value=5.9 Score=34.68 Aligned_cols=113 Identities=12% Similarity=0.186 Sum_probs=72.9
Q ss_pred ccEEEecCeeEEeeecCceeEeEEEEEcCCC-CeEEEEEEeCC---C----CcEEEeCCeeeeCCCCeEEEEEEeccccC
Q 027214 8 QLISVHPEELKFIFELEKQGFCDLKVINNTE-HHVAFKVKTTS---P----KKYFVRPNTGVVQPWDSCIIRVTLQAQRE 79 (226)
Q Consensus 8 ~lL~i~P~eL~F~~~~~~~~~~~l~L~N~s~-~~vaFKVKTT~---p----~~Y~VrP~~G~I~P~~s~~I~V~l~~~~~ 79 (226)
.-|.+++..+.|+.. .....++|.|.++ .++.-.....+ . .-|.|-|+.--|+||+...|.|.......
T Consensus 37 Agv~l~~TRvIy~~~---~~~~sl~v~N~~~~~p~LvQsWvd~~~~~~~~~~pFivtPPlfrl~p~~~q~lRIi~~~~~~ 113 (243)
T PRK15290 37 AGVVIGGTRVVYLSN---NPDKSISVFSKEEKIPYLIQAWVDPFNKEDKSKAPFTVIPPVSRLEPSQEKVLRIIHTKGVS 113 (243)
T ss_pred EeEEECceEEEEeCC---CceEEEEEEeCCCCCcEEEEEEEecCCCCCcccCCEEEcCCeEEECCCCceEEEEEEcCCCC
Confidence 347788888888753 4567999999986 56666665541 1 14999999999999999999999875323
Q ss_pred CCCCCCCCCeEEEEEEecCCCCCCCCCCCCcccccCCCcceEEEeEEEEeCCC
Q 027214 80 SPPDMQCKDKFLLQSTIVPSNTDVDDLPPDTFNKDSGKTIEECKLRVVYVSPS 132 (226)
Q Consensus 80 ~p~~~~~~dKFlVqs~~~~~~~~~~d~~~~~f~k~~~~~i~~~kL~v~~~~p~ 132 (226)
.|.|. ..-|.+....+|+....++ .. .=......++++-|.+..
T Consensus 114 LP~DR--ESlf~lnv~eIPp~~~~~~------~n-~L~iair~rIKlFyRP~~ 157 (243)
T PRK15290 114 LPDDR--ESVFWLNIKNIPPSASNKA------TN-SLEIAVKTRIKLFWRPAS 157 (243)
T ss_pred CCCCe--eEEEEEEEEEcCCCCcccc------cc-eEEEEEEEeeeEEEeccc
Confidence 55552 3446666666665311100 00 012235667777776544
No 21
>PRK10884 SH3 domain-containing protein; Provisional
Probab=89.47 E-value=0.92 Score=38.78 Aligned_cols=60 Identities=18% Similarity=0.176 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccCC-----CCchHHHHHHHHHHHHHHHHHHhhhccC
Q 027214 158 RLKDERDAAVRQTQLLQQDLDMLKRRGQRKGV-----RGFSLMFAAFVGLIGIMVGLILNLLLSS 217 (226)
Q Consensus 158 ~L~eE~~~~~~en~~L~~el~~lr~~~~~~~~-----~g~s~~~v~lv~lla~~lG~~l~~~~~~ 217 (226)
....+.+.+.+||++|++|+..++.....-.. ..-..+-.++.+-.-+++|.|+|+++.-
T Consensus 129 ~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~~~~wf~~Gg~v~~~GlllGlilp~ 193 (206)
T PRK10884 129 QSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTIIMQWFMYGGGVAGIGLLLGLLLPH 193 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc
Confidence 34444555778888888888877766432111 1223456799999999999999999865
No 22
>COG3121 FimC P pilus assembly protein, chaperone PapD [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=89.40 E-value=6.9 Score=33.92 Aligned_cols=87 Identities=13% Similarity=0.173 Sum_probs=67.9
Q ss_pred ccEEEecCeeEEeeecCceeEeEEEEEcCCCCeEEEEEEeCC-------CCcEEEeCCeeeeCCCCeEEEEEEeccccCC
Q 027214 8 QLISVHPEELKFIFELEKQGFCDLKVINNTEHHVAFKVKTTS-------PKKYFVRPNTGVVQPWDSCIIRVTLQAQRES 80 (226)
Q Consensus 8 ~lL~i~P~eL~F~~~~~~~~~~~l~L~N~s~~~vaFKVKTT~-------p~~Y~VrP~~G~I~P~~s~~I~V~l~~~~~~ 80 (226)
.-+.|.+..+.|+.. .....++|.|.++.++.-.+..-+ ..-|.|-|+.-.|+||+...|.|...+. ..
T Consensus 27 A~v~i~~TRiI~~~~---~k~~sl~l~N~~~~p~LvQ~wvd~~~~~~~~~~pfvvtPPv~rl~p~~~q~vRi~~~~~-~l 102 (235)
T COG3121 27 AGVVLGGTRIIYPAG---DKETSLTLRNDGNQPYLVQSWVDDGLEPEKSTVPFVVTPPVFRLEPGQEQQLRILYTGN-KL 102 (235)
T ss_pred eeEEecceEEEEeCC---CceeEEEEEcCCCCCEEEEEEEcCCCCCccccCCEEecCCeEEECCCCccEEEEEecCC-CC
Confidence 457778888888764 456799999988999998876652 3479999999999999999999999985 45
Q ss_pred CCCCCCCCeEEEEEEecCCC
Q 027214 81 PPDMQCKDKFLLQSTIVPSN 100 (226)
Q Consensus 81 p~~~~~~dKFlVqs~~~~~~ 100 (226)
|.|. ..-|.+.--.+|+.
T Consensus 103 P~dr--Eslf~lnv~eIPp~ 120 (235)
T COG3121 103 PADR--ESLFRLNVDEIPPK 120 (235)
T ss_pred CCCc--eeEEEEEeeecCCC
Confidence 6653 45666666667654
No 23
>PRK15188 fimbrial chaperone protein BcfB; Provisional
Probab=88.65 E-value=9.6 Score=33.05 Aligned_cols=86 Identities=20% Similarity=0.300 Sum_probs=59.7
Q ss_pred ccEEEecCeeEEeeecCceeEeEEEEEcCCCC-eEEEEEEeCC--C---CcEEEeCCeeeeCCCCeEEEEEEeccccCCC
Q 027214 8 QLISVHPEELKFIFELEKQGFCDLKVINNTEH-HVAFKVKTTS--P---KKYFVRPNTGVVQPWDSCIIRVTLQAQRESP 81 (226)
Q Consensus 8 ~lL~i~P~eL~F~~~~~~~~~~~l~L~N~s~~-~vaFKVKTT~--p---~~Y~VrP~~G~I~P~~s~~I~V~l~~~~~~p 81 (226)
.-+.+++..+.|+.. .....++|+|.+++ +..-...... . .-|.|.|+.--|+||+...+.|..... ..|
T Consensus 27 Agi~l~~TRvIy~~~---~~~~sv~i~N~~~~~p~LvQsWv~~~~~~~~~pFivtPPlfrl~~~~~~~lRI~~~~~-~lP 102 (228)
T PRK15188 27 GGIALGATRVIYPQG---SKQTSLPIINSSASNVFLIQSWVANADGSRSTDFIITPPLFVIQPKKENILRIMYVGP-SLP 102 (228)
T ss_pred ceEEECcEEEEEcCC---CceEEEEEEeCCCCccEEEEEEEecCCCCccCCEEEcCCeEEECCCCceEEEEEECCC-CCC
Confidence 457888888888763 45679999999854 3332222211 1 249999999999999999999998753 455
Q ss_pred CCCCCCCeEEEEEEecCC
Q 027214 82 PDMQCKDKFLLQSTIVPS 99 (226)
Q Consensus 82 ~~~~~~dKFlVqs~~~~~ 99 (226)
.|. ..-|-+....+|+
T Consensus 103 ~DR--ESlf~lnv~~IP~ 118 (228)
T PRK15188 103 TDR--ESVFYLNSKAIPS 118 (228)
T ss_pred CCc--eEEEEEEEEecCC
Confidence 552 3446666666665
No 24
>PRK15195 fimbrial chaperone protein FimC; Provisional
Probab=88.16 E-value=6.8 Score=33.88 Aligned_cols=86 Identities=16% Similarity=0.207 Sum_probs=57.3
Q ss_pred ccEEEecCeeEEeeecCceeEeEEEEEcCCCC-eEE-EEEEeCC----CCcEEEeCCeeeeCCCCeEEEEEEeccccCCC
Q 027214 8 QLISVHPEELKFIFELEKQGFCDLKVINNTEH-HVA-FKVKTTS----PKKYFVRPNTGVVQPWDSCIIRVTLQAQRESP 81 (226)
Q Consensus 8 ~lL~i~P~eL~F~~~~~~~~~~~l~L~N~s~~-~va-FKVKTT~----p~~Y~VrP~~G~I~P~~s~~I~V~l~~~~~~p 81 (226)
.-+.+++..+.|+.. .....++|.|.+++ +.. ...-.+. ..-|.|.|+.--|+||+...|.|..... ..|
T Consensus 25 Agi~i~~TRvIy~~~---~~~~si~l~N~~~~~~~LvQsWv~~~~~~~~~pfivtPPlfrl~p~~~q~lRIi~~~~-~LP 100 (229)
T PRK15195 25 GGIALGATRVIYPAD---AKQTSLAIRNSHTNERYLVNSWIENSSGVKEKSFIVTPPLFVSEPKSENTLRIIYAGP-PLA 100 (229)
T ss_pred eeEEECCeEEEEeCC---CceEEEEEEeCCCCccEEEEEEecCCCCCccCCEEEcCCeEEECCCCceEEEEEECCC-CCC
Confidence 457888888888753 33589999999854 333 3211111 1259999999999999999999998752 345
Q ss_pred CCCCCCCeEEEEEEecCC
Q 027214 82 PDMQCKDKFLLQSTIVPS 99 (226)
Q Consensus 82 ~~~~~~dKFlVqs~~~~~ 99 (226)
.|. ..-|.+....+|+
T Consensus 101 ~Dr--ESlf~Lnv~eIP~ 116 (229)
T PRK15195 101 ADR--ESLFWMNVKAIPS 116 (229)
T ss_pred CCe--eEEEEEEeeecCC
Confidence 542 2335555555554
No 25
>PRK15254 fimbrial chaperone protein StdC; Provisional
Probab=87.47 E-value=13 Score=32.45 Aligned_cols=87 Identities=14% Similarity=0.148 Sum_probs=60.1
Q ss_pred ccEEEecCeeEEeeecCceeEeEEEEEcCCC-CeEEEEEEeCC----C-CcEEEeCCeeeeCCCCeEEEEEEecc--ccC
Q 027214 8 QLISVHPEELKFIFELEKQGFCDLKVINNTE-HHVAFKVKTTS----P-KKYFVRPNTGVVQPWDSCIIRVTLQA--QRE 79 (226)
Q Consensus 8 ~lL~i~P~eL~F~~~~~~~~~~~l~L~N~s~-~~vaFKVKTT~----p-~~Y~VrP~~G~I~P~~s~~I~V~l~~--~~~ 79 (226)
.-+.+++..+.|+.. .....++|.|.++ .++.=...... + .-|.|.|+.--|+||+...|.|.... ...
T Consensus 16 A~v~l~~TRvIy~~~---~~~~sv~v~N~~~~~p~LvQsWv~d~~~~~~~pFivtPPlfrl~p~~~~~lRI~~~~~~~~~ 92 (239)
T PRK15254 16 AAVNVDRTRIIMDAP---QKTVAITLNNDDKTTPFLAQSWVTDADGVRTDALMALPPLQRIDAGQKSQVRITQVRGLTDK 92 (239)
T ss_pred EeEEECceEEEEeCC---CceEEEEEEeCCCCCcEEEEEEEecCCCCCcCCEEEcCCeEEECCCCceEEEEEEcccCCCC
Confidence 457788888888753 4567999999875 45544433321 1 24999999999999999999999763 234
Q ss_pred CCCCCCCCCeEEEEEEecCC
Q 027214 80 SPPDMQCKDKFLLQSTIVPS 99 (226)
Q Consensus 80 ~p~~~~~~dKFlVqs~~~~~ 99 (226)
.|.|. ..-|-+....+|+
T Consensus 93 lP~DR--ESlf~lnv~~IP~ 110 (239)
T PRK15254 93 LPQDR--ETLFWFNVRGVPP 110 (239)
T ss_pred CCCCc--eEEEEEEEEEcCC
Confidence 55552 3446666666665
No 26
>PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain of unknown function is present in bacterial and plant peptidases belonging to MEROPS peptidase family S8 (subfamily S8A subtilisin, clan SB). It is C-terminal to and adjacent to the S8 peptidase domain and can be found in conjunction with the PA (Protease associated) domain (IPR003137 from INTERPRO) and additionally in Gram-positive bacteria with the surface protein anchor domain (IPR001899 from INTERPRO).; GO: 0004252 serine-type endopeptidase activity, 0005618 cell wall, 0016020 membrane; PDB: 3EIF_A 1XF1_B.
Probab=87.18 E-value=2.2 Score=32.25 Aligned_cols=54 Identities=17% Similarity=0.219 Sum_probs=33.7
Q ss_pred CceeEeEEEEEcCCCCeEEEEEEeC-----C---CCcEEE-e------------CCeeeeCCCCeEEEEEEeccc
Q 027214 24 EKQGFCDLKVINNTEHHVAFKVKTT-----S---PKKYFV-R------------PNTGVVQPWDSCIIRVTLQAQ 77 (226)
Q Consensus 24 ~~~~~~~l~L~N~s~~~vaFKVKTT-----~---p~~Y~V-r------------P~~G~I~P~~s~~I~V~l~~~ 77 (226)
++..+..|+|+|.+++.+.|++.-. . .+.|.. . |..=.|+||++.+|.|++.+.
T Consensus 7 ~~~~~~~itl~N~~~~~~ty~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~vTV~ag~s~~v~vti~~p 81 (112)
T PF06280_consen 7 GNKFSFTITLHNYGDKPVTYTLSHVPVLTDKTDTEEGYSILVPPVPSISTVSFSPDTVTVPAGQSKTVTVTITPP 81 (112)
T ss_dssp -SEEEEEEEEEE-SSS-EEEEEEEE-EEEEEE--ETTEEEEEEEE----EEE---EEEEE-TTEEEEEEEEEE--
T ss_pred CCceEEEEEEEECCCCCEEEEEeeEEEEeeEeeccCCcccccccccceeeEEeCCCeEEECCCCEEEEEEEEEeh
Confidence 3446789999999999999997665 1 122221 1 223368999999999998874
No 27
>PRK15218 fimbrial chaperone protein PegB; Provisional
Probab=86.54 E-value=15 Score=31.77 Aligned_cols=113 Identities=14% Similarity=0.220 Sum_probs=69.8
Q ss_pred cEEEecCeeEEeeecCceeEeEEEEEcCCCCeEEEEEEeCCC----------CcEEEeCCeeeeCCCCeEEEEEEecccc
Q 027214 9 LISVHPEELKFIFELEKQGFCDLKVINNTEHHVAFKVKTTSP----------KKYFVRPNTGVVQPWDSCIIRVTLQAQR 78 (226)
Q Consensus 9 lL~i~P~eL~F~~~~~~~~~~~l~L~N~s~~~vaFKVKTT~p----------~~Y~VrP~~G~I~P~~s~~I~V~l~~~~ 78 (226)
-|.++-..+.|+.. .....++|.|.++.+..=....... .-|-|.|+.--|+||+...+.|.... .
T Consensus 19 gi~l~~TRvIy~~~---~~~~si~i~N~~~~pyLvQsWvd~~~~~~~~~~~~~pFivtPPlfRl~p~~~~~lRI~~~~-~ 94 (226)
T PRK15218 19 GIYIYGTRIIYPAQ---KKDITVQLMNDGKRSSLIQAWIDNGDTSLPPEKLQVPFIMTPPVIRVAANSGQQLKIKKLA-N 94 (226)
T ss_pred eEEeCceEEEEcCC---CcEEEEEEEcCCCCcEEEEEEEeCCCCCCCcccccCCEEECCCeEEECCCCceEEEEEECC-C
Confidence 35555557777752 4467899999998764333322221 14999999999999999999999875 3
Q ss_pred CCCCCCCCCCeEEEEEEecCCCCCCCCCCCCcccccCCCcceEEEeEEEEeCCCC
Q 027214 79 ESPPDMQCKDKFLLQSTIVPSNTDVDDLPPDTFNKDSGKTIEECKLRVVYVSPSS 133 (226)
Q Consensus 79 ~~p~~~~~~dKFlVqs~~~~~~~~~~d~~~~~f~k~~~~~i~~~kL~v~~~~p~~ 133 (226)
..|.|. .--|-+....+|+..+.. + .+..=......++++-|.+..-
T Consensus 95 ~LP~DR--ESlfwlnv~~IPp~~~~~----~--~~n~L~iairtrIKLfYRP~~L 141 (226)
T PRK15218 95 NLPGDR--ESLFYLNVLDIPPNSDEN----K--DKNIIKFALQNRIKLIYRPPGV 141 (226)
T ss_pred CCCcce--eEEEEEEEEEcCCCCCCc----C--cCcEEEEEeeeEEEEEEccccc
Confidence 456552 344666666677632110 0 0000122356677777775443
No 28
>PRK15224 pili assembly chaperone protein SafB; Provisional
Probab=86.52 E-value=13 Score=32.39 Aligned_cols=82 Identities=15% Similarity=0.202 Sum_probs=57.2
Q ss_pred EEEecCeeEEeeecCceeEeEEEEEcCCCCeEEEEEEe----CC---CCcEEEeCCeeeeCCCCeEEEEEEeccccCCCC
Q 027214 10 ISVHPEELKFIFELEKQGFCDLKVINNTEHHVAFKVKT----TS---PKKYFVRPNTGVVQPWDSCIIRVTLQAQRESPP 82 (226)
Q Consensus 10 L~i~P~eL~F~~~~~~~~~~~l~L~N~s~~~vaFKVKT----T~---p~~Y~VrP~~G~I~P~~s~~I~V~l~~~~~~p~ 82 (226)
|.++-..+.|+.. .....++|.|.++.+ |-|++ .. ..-|.|.|+.--|+|++...|.|.... ...|.
T Consensus 30 v~l~~TRvIy~~~---~k~~sl~v~N~~~~p--yLvQsWvd~~~~~~~~pFivtPPlfRlep~~~~~lRI~~~~-~~LP~ 103 (237)
T PRK15224 30 VKLGATRVIYHAG---TAGATLSVSNPQNYP--ILVQSSVKAADKSSPAPFLVMPPLFRLEANQQSQLRIVRTG-GDMPT 103 (237)
T ss_pred EEeCceEEEEeCC---CcEEEEEEEcCCCCc--EEEEEEEeCCCCCccCCEEECCCeEEECCCCceEEEEEECC-CCCCC
Confidence 4444456777652 456789999998876 55555 11 124999999999999999999999874 35666
Q ss_pred CCCCCCeEEEEEEecCC
Q 027214 83 DMQCKDKFLLQSTIVPS 99 (226)
Q Consensus 83 ~~~~~dKFlVqs~~~~~ 99 (226)
|. .--|-+....+|+
T Consensus 104 DR--ESlFwlnv~~IPp 118 (237)
T PRK15224 104 DR--ETLQWVCIKAVPP 118 (237)
T ss_pred ce--eEEEEEEEEEcCC
Confidence 52 3446666666665
No 29
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=84.03 E-value=3 Score=30.76 Aligned_cols=28 Identities=14% Similarity=0.328 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 027214 158 RLKDERDAAVRQTQLLQQDLDMLKRRGQ 185 (226)
Q Consensus 158 ~L~eE~~~~~~en~~L~~el~~lr~~~~ 185 (226)
.+.+|...+.......++||..||+.+.
T Consensus 40 ~lE~E~~~l~~~l~~~E~eL~~LrkENr 67 (85)
T PF15188_consen 40 SLEKELNELKEKLENNEKELKLLRKENR 67 (85)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHhhh
Confidence 4557777788888888889999998754
No 30
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=83.88 E-value=11 Score=27.77 Aligned_cols=21 Identities=19% Similarity=0.376 Sum_probs=16.6
Q ss_pred chHHHHHHHHHHHHHHHHHHh
Q 027214 192 FSLMFAAFVGLIGIMVGLILN 212 (226)
Q Consensus 192 ~s~~~v~lv~lla~~lG~~l~ 212 (226)
.|+..+.+.+.+||+||++++
T Consensus 72 ~P~~svgiAagvG~llG~Ll~ 92 (94)
T PF05957_consen 72 NPWQSVGIAAGVGFLLGLLLR 92 (94)
T ss_pred ChHHHHHHHHHHHHHHHHHHh
Confidence 367788888888888888874
No 31
>PRK15274 putative periplasmic fimbrial chaperone protein SteC; Provisional
Probab=82.84 E-value=27 Score=30.85 Aligned_cols=85 Identities=12% Similarity=0.140 Sum_probs=56.8
Q ss_pred EEEecCeeEEeeecCceeEeEEEEEcCCCC-eEEEEEEeCCC------CcEEEeCCeeeeCCCCeEEEEEEecc-ccCCC
Q 027214 10 ISVHPEELKFIFELEKQGFCDLKVINNTEH-HVAFKVKTTSP------KKYFVRPNTGVVQPWDSCIIRVTLQA-QRESP 81 (226)
Q Consensus 10 L~i~P~eL~F~~~~~~~~~~~l~L~N~s~~-~vaFKVKTT~p------~~Y~VrP~~G~I~P~~s~~I~V~l~~-~~~~p 81 (226)
+.++-..+.|+.. .....++|.|.++. ++.-....... .-|.|.|+.--|+||+...|.|...+ ....|
T Consensus 28 i~l~~TRvIy~e~---~~~~sv~v~N~~~~~p~LVQsWvdd~~~~~~~~pFivtPPLfRlep~~~q~lRI~~~~~~~~LP 104 (257)
T PRK15274 28 IVPDRTRVIFNGN---ENSITVTLKNGNATLPYLAQAWLEDDKFAKDTRYFTALPPLQRIEPKSDGQVKVQPLPAAASLP 104 (257)
T ss_pred EEeCceEEEEeCC---CceEEEEEEeCCCCCcEEEEEEccCCCCCcccCCEEEcCCeEEECCCCceEEEEEECCCCCCCC
Confidence 4555556778752 44678999999865 54433322211 14999999999999999999999875 23455
Q ss_pred CCCCCCCeEEEEEEecCC
Q 027214 82 PDMQCKDKFLLQSTIVPS 99 (226)
Q Consensus 82 ~~~~~~dKFlVqs~~~~~ 99 (226)
.|. .--|-+....+|+
T Consensus 105 ~DR--ESlFwlNv~eIPp 120 (257)
T PRK15274 105 QDR--ESLFYFNVREIPP 120 (257)
T ss_pred Cce--eEEEEEEEEEcCC
Confidence 552 3346666666665
No 32
>PRK15253 putative fimbrial assembly chaperone protein StcB; Provisional
Probab=82.68 E-value=27 Score=30.51 Aligned_cols=85 Identities=13% Similarity=0.161 Sum_probs=57.9
Q ss_pred cEEEecCeeEEeeecCceeEeEEEEEcCCCCeEEEEEEeCCC----------CcEEEeCCeeeeCCCCeEEEEEEecccc
Q 027214 9 LISVHPEELKFIFELEKQGFCDLKVINNTEHHVAFKVKTTSP----------KKYFVRPNTGVVQPWDSCIIRVTLQAQR 78 (226)
Q Consensus 9 lL~i~P~eL~F~~~~~~~~~~~l~L~N~s~~~vaFKVKTT~p----------~~Y~VrP~~G~I~P~~s~~I~V~l~~~~ 78 (226)
-+.++-.-+.|+.. .....++|.|.++.+..=.....+. .-|.|.|+.--|+|++...|.|.... .
T Consensus 34 gv~l~~TRvIy~~~---~k~~sv~i~N~~~~pyLvQsWvd~~~~~~~~~~~~~pFivtPPlfRl~p~~~~~lRI~~~~-~ 109 (242)
T PRK15253 34 GIVIYGTRVIYPAE---KKEVVVQLVNQGEQASLVQSWIDDGNTSLPPEKIQVPFMLTPPVARVAAESGQQIKIKKMP-N 109 (242)
T ss_pred eEEeCceEEEEeCC---CceEEEEEEcCCCCcEEEEEEEECCCCCCCcccccCCEEECCCeEEECCCCceEEEEEECC-C
Confidence 34555556777652 4567899999998764433322221 14999999999999999999999775 3
Q ss_pred CCCCCCCCCCeEEEEEEecCC
Q 027214 79 ESPPDMQCKDKFLLQSTIVPS 99 (226)
Q Consensus 79 ~~p~~~~~~dKFlVqs~~~~~ 99 (226)
..|.|. .--|-+....+|+
T Consensus 110 ~LP~DR--ESlfwlnv~~IPp 128 (242)
T PRK15253 110 SLPDNK--ESLFYLNVLDIPP 128 (242)
T ss_pred CCCcce--eEEEEEEEEEcCC
Confidence 456552 3446666666776
No 33
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=80.90 E-value=3.9 Score=28.81 Aligned_cols=56 Identities=14% Similarity=0.225 Sum_probs=33.0
Q ss_pred CceeEeEEEEEcCCCCeE-EEEEEeCCCCcEE--EeCCee-eeCCCCeEEEEEEeccccC
Q 027214 24 EKQGFCDLKVINNTEHHV-AFKVKTTSPKKYF--VRPNTG-VVQPWDSCIIRVTLQAQRE 79 (226)
Q Consensus 24 ~~~~~~~l~L~N~s~~~v-aFKVKTT~p~~Y~--VrP~~G-~I~P~~s~~I~V~l~~~~~ 79 (226)
++..+-.++++|.++.++ ..++.-..|.-+. +.|... -|.||++..+.+.+.+..+
T Consensus 4 G~~~~~~~tv~N~g~~~~~~v~~~l~~P~GW~~~~~~~~~~~l~pG~s~~~~~~V~vp~~ 63 (78)
T PF10633_consen 4 GETVTVTLTVTNTGTAPLTNVSLSLSLPEGWTVSASPASVPSLPPGESVTVTFTVTVPAD 63 (78)
T ss_dssp TEEEEEEEEEE--SSS-BSS-EEEEE--TTSE---EEEEE--B-TTSEEEEEEEEEE-TT
T ss_pred CCEEEEEEEEEECCCCceeeEEEEEeCCCCccccCCccccccCCCCCEEEEEEEEECCCC
Confidence 345677899999986543 3555555688766 555543 6999999999999987533
No 34
>PRK15233 putative fimbrial chaperone protein SefB; Provisional
Probab=80.55 E-value=38 Score=29.75 Aligned_cols=82 Identities=13% Similarity=0.138 Sum_probs=55.1
Q ss_pred EEEecCeeEEeeecCceeEeEEEEEcCCCCeEEEEEEe--CC-----CCcEEEeCCeeeeCCCCeEEEEEEeccccCCCC
Q 027214 10 ISVHPEELKFIFELEKQGFCDLKVINNTEHHVAFKVKT--TS-----PKKYFVRPNTGVVQPWDSCIIRVTLQAQRESPP 82 (226)
Q Consensus 10 L~i~P~eL~F~~~~~~~~~~~l~L~N~s~~~vaFKVKT--T~-----p~~Y~VrP~~G~I~P~~s~~I~V~l~~~~~~p~ 82 (226)
+.++-..+.|+.. .....++|.|.++.+ |-|++ .+ ..-|.|.|+.--|+|++...+.|..... ..|.
T Consensus 42 i~l~~TRvIy~~~---~~~~sl~i~N~~~~p--~LvQsWvd~~~~~~~~pFiVtPPLfRLep~~~~~lRIi~~~~-~LP~ 115 (246)
T PRK15233 42 LRLGTTRVIYKED---APSTSFWIMNEKEYP--ILVQTQVYNDDKSSKAPFIVTPPILKVESNARTRLKVIPTSN-LFNK 115 (246)
T ss_pred EEeCceEEEEeCC---CcEEEEEEEcCCCCc--EEEEEEEecCCCCccCCEEECCCeEEECCCCceEEEEEECCC-CCCc
Confidence 3444445666542 356789999988776 44444 11 1149999999999999999999998753 4555
Q ss_pred CCCCCCeEEEEEEecCC
Q 027214 83 DMQCKDKFLLQSTIVPS 99 (226)
Q Consensus 83 ~~~~~dKFlVqs~~~~~ 99 (226)
|. .--|-+....+|+
T Consensus 116 DR--ESlfwlnv~~IPp 130 (246)
T PRK15233 116 NE--ESLYWLCVKGVPP 130 (246)
T ss_pred Cc--eEEEEEEEEEcCC
Confidence 52 2336666666665
No 35
>TIGR03079 CH4_NH3mon_ox_B methane monooxygenase/ammonia monooxygenase, subunit B. Both ammonia oxidizers such as Nitrosomonas europaea and methanotrophs (obligate methane oxidizers) such as Methylococcus capsulatus each can grow only on their own characteristic substrate. However, both groups have the ability to oxidize both substrates, and so the relevant enzymes must be named here according to their ability to oxidze both. The protein family represented here reflects subunit B of both the particulate methane monooxygenase of methylotrophs and the ammonia monooxygenase of nitrifying bacteria.
Probab=80.09 E-value=4.5 Score=37.57 Aligned_cols=55 Identities=11% Similarity=0.196 Sum_probs=40.7
Q ss_pred cCceeEeEEEEEcCCCCeEEEEEEeCCCCc-------EEEeCCee--------------eeCCCCeEEEEEEeccc
Q 027214 23 LEKQGFCDLKVINNTEHHVAFKVKTTSPKK-------YFVRPNTG--------------VVQPWDSCIIRVTLQAQ 77 (226)
Q Consensus 23 ~~~~~~~~l~L~N~s~~~vaFKVKTT~p~~-------Y~VrP~~G--------------~I~P~~s~~I~V~l~~~ 77 (226)
.++..+-+++++|.++++|-.+==+|+.-| |...|+.. =|.|||+.+|.|..|..
T Consensus 280 PGR~l~~~~~VTN~g~~~vrlgEF~TA~vRFlN~~~v~~~~~~yP~~lla~GL~v~d~~pI~PGETr~v~v~aqdA 355 (399)
T TIGR03079 280 PGRALRVTMEITNNGDQVISIGEFTTAGIRFMNANGVRVLDPDYPRELLAEGLEVDDQSAIAPGETVEVKMEAKDA 355 (399)
T ss_pred CCcEEEEEEEEEcCCCCceEEEeEeecceEeeCcccccccCCCChHHHhhccceeCCCCCcCCCcceEEEEEEehh
Confidence 356778899999999999988855555443 33444432 28999999999998853
No 36
>smart00340 HALZ homeobox associated leucin zipper.
Probab=79.83 E-value=4.1 Score=26.07 Aligned_cols=27 Identities=19% Similarity=0.229 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027214 158 RLKDERDAAVRQTQLLQQDLDMLKRRG 184 (226)
Q Consensus 158 ~L~eE~~~~~~en~~L~~el~~lr~~~ 184 (226)
-|+.=...+.+||++|+.|++.||...
T Consensus 9 ~LKrcce~LteeNrRL~ke~~eLralk 35 (44)
T smart00340 9 LLKRCCESLTEENRRLQKEVQELRALK 35 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 445555678899999999999999764
No 37
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=79.54 E-value=4 Score=29.46 Aligned_cols=28 Identities=21% Similarity=0.370 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027214 156 LQRLKDERDAAVRQTQLLQQDLDMLKRR 183 (226)
Q Consensus 156 i~~L~eE~~~~~~en~~L~~el~~lr~~ 183 (226)
|..+++|..+|++++++|+.||..+++.
T Consensus 2 i~ei~eEn~~Lk~eiqkle~ELq~~~~~ 29 (76)
T PF07334_consen 2 IHEIQEENARLKEEIQKLEAELQQNKRE 29 (76)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5688999999999999999998887754
No 38
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=78.40 E-value=8.9 Score=26.90 Aligned_cols=16 Identities=19% Similarity=0.337 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHh
Q 027214 197 AAFVGLIGIMVGLILN 212 (226)
Q Consensus 197 v~lv~lla~~lG~~l~ 212 (226)
.++=+++++++|++++
T Consensus 56 ~iiGaiI~~i~~~i~K 71 (71)
T PF10779_consen 56 TIIGAIITAIIYLIIK 71 (71)
T ss_pred HHHHHHHHHHHHHHhC
Confidence 4555566666666553
No 39
>PRK01844 hypothetical protein; Provisional
Probab=77.85 E-value=2.6 Score=30.11 Aligned_cols=16 Identities=13% Similarity=0.432 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 027214 196 FAAFVGLIGIMVGLIL 211 (226)
Q Consensus 196 ~v~lv~lla~~lG~~l 211 (226)
.+++.+|+|+++|||+
T Consensus 9 l~I~~li~G~~~Gff~ 24 (72)
T PRK01844 9 VGVVALVAGVALGFFI 24 (72)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444555555544
No 40
>PRK15285 putative fimbrial chaperone protein StfD; Provisional
Probab=77.65 E-value=49 Score=29.07 Aligned_cols=86 Identities=14% Similarity=0.123 Sum_probs=56.3
Q ss_pred cEEEecCeeEEeeecCceeEeEEEEEcCCCC-eEEEEEEeC--CCC----cEEEeCCeeeeCCCCeEEEEEEecc-ccCC
Q 027214 9 LISVHPEELKFIFELEKQGFCDLKVINNTEH-HVAFKVKTT--SPK----KYFVRPNTGVVQPWDSCIIRVTLQA-QRES 80 (226)
Q Consensus 9 lL~i~P~eL~F~~~~~~~~~~~l~L~N~s~~-~vaFKVKTT--~p~----~Y~VrP~~G~I~P~~s~~I~V~l~~-~~~~ 80 (226)
-+.++-..+.|+.. .....++|.|.++. ++.-..... ..+ -|.|.|+.--|+||+...|.|...+ ....
T Consensus 26 gv~l~~TRVIy~~~---~~~~sv~i~N~~~~~p~LvQsWvd~~~~~~~~~pFiVtPPlfRl~p~~~~~lRI~~~~~~~~L 102 (250)
T PRK15285 26 AIAPDRTRLVFRGE---DKSISVDLKNANSKLPYLAQSWVEDEKGVKITSPLIVVPPVQRIEPSAIGQVKIQGMPALASL 102 (250)
T ss_pred eEEeCccEEEEcCC---CceEEEEEEeCCCCCcEEEEEEeeCCCCCcccCCEEEcCCeEEECCCCceEEEEEECCCCCCC
Confidence 34555557788752 44678999999865 443332221 211 3999999999999999999999775 2345
Q ss_pred CCCCCCCCeEEEEEEecCC
Q 027214 81 PPDMQCKDKFLLQSTIVPS 99 (226)
Q Consensus 81 p~~~~~~dKFlVqs~~~~~ 99 (226)
|.|. .--|-+....+|+
T Consensus 103 P~DR--ESlfwlnv~~IPp 119 (250)
T PRK15285 103 PQDR--ETLFYYNVREIPP 119 (250)
T ss_pred CCCc--eEEEEEEEEEcCC
Confidence 5552 3445566666665
No 41
>smart00809 Alpha_adaptinC2 Adaptin C-terminal domain. Adaptins are components of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. Gamma-adaptin is a subunit of the golgi adaptor. Alpha adaptin is a heterotetramer that regulates clathrin-bud formation. The carboxyl-terminal appendage of the alpha subunit regulates translocation of endocytic accessory proteins to the bud site. This Ig-fold domain is found in alpha, beta and gamma adaptins and consists of a beta-sandwich containing 7 strands in 2 beta-sheets in a greek-key topology PUBMED:10430869, PUBMED:12176391. The adaptor appendage contains an additional N-terminal strand.
Probab=77.56 E-value=17 Score=26.58 Aligned_cols=53 Identities=13% Similarity=0.209 Sum_probs=39.5
Q ss_pred CceeEeEEEEEcCCCCeEE-EEEEeCCCCcEEEe--CCee-eeCCCCeEEEEEEecc
Q 027214 24 EKQGFCDLKVINNTEHHVA-FKVKTTSPKKYFVR--PNTG-VVQPWDSCIIRVTLQA 76 (226)
Q Consensus 24 ~~~~~~~l~L~N~s~~~va-FKVKTT~p~~Y~Vr--P~~G-~I~P~~s~~I~V~l~~ 76 (226)
+....-.+...|.+..++. |.+.-..|+-+.++ |..| .|+||+.+.-.+.+..
T Consensus 17 ~~~~~i~~~~~N~s~~~it~f~~~~avpk~~~l~l~~~s~~~l~p~~~i~q~~~i~~ 73 (104)
T smart00809 17 PGLIRITLTFTNKSPSPITNFSFQAAVPKSLKLQLQPPSSPTLPPGGQITQVLKVEN 73 (104)
T ss_pred CCeEEEEEEEEeCCCCeeeeEEEEEEcccceEEEEcCCCCCccCCCCCEEEEEEEEC
Confidence 3467788999999987776 88888888866665 5544 7899987666666554
No 42
>PF02344 Myc-LZ: Myc leucine zipper domain; InterPro: IPR003327 This family consists of the leucine zipper dimerisation domain found in both cellular c-Myc proto-oncogenes and viral v-Myc oncogenes. Dimerisation via the leucine zipper motif with other basic helix-loop-helix-leucine zipper (b/HLH/lz) proteins is required for efficient DNA binding []. The Myc-Max dimer is a transactivating complex activating expression of growth related genes promoting cell proliferation. The dimerisation is facilitated via interdigitating leucine residues every 7th position of the alpha helix. Like charge repulsion of adjacent residues in this region preturbs the formation of homodimers with heterodimers being promoted by opposing charge attractions. It has been demonstrated that in transgenic mice the balance between oncogene-induced proliferation and apoptosis in a given tissue can be a critical determinant in the initiation and maintenance of the tumor [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1NKP_D 1A93_A 2A93_A.
Probab=77.09 E-value=9.4 Score=22.86 Aligned_cols=26 Identities=27% Similarity=0.506 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027214 157 QRLKDERDAAVRQTQLLQQDLDMLKR 182 (226)
Q Consensus 157 ~~L~eE~~~~~~en~~L~~el~~lr~ 182 (226)
.+|..|.+.++...++|+..++.||.
T Consensus 4 qkL~sekeqLrrr~eqLK~kLeqlrn 29 (32)
T PF02344_consen 4 QKLISEKEQLRRRREQLKHKLEQLRN 29 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 57888999999999999999988874
No 43
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=75.89 E-value=3.1 Score=29.54 Aligned_cols=18 Identities=22% Similarity=0.488 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 027214 196 FAAFVGLIGIMVGLILNL 213 (226)
Q Consensus 196 ~v~lv~lla~~lG~~l~~ 213 (226)
.++++..+++++|.++|.
T Consensus 5 lail~ivl~ll~G~~~G~ 22 (71)
T COG3763 5 LAILLIVLALLAGLIGGF 22 (71)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444443
No 44
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=75.23 E-value=6.9 Score=29.78 Aligned_cols=31 Identities=16% Similarity=0.194 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027214 152 ANSALQRLKDERDAAVRQTQLLQQDLDMLKR 182 (226)
Q Consensus 152 ~~~~i~~L~eE~~~~~~en~~L~~el~~lr~ 182 (226)
..+.+..+++|+.+++++|+.|+.|+..|+.
T Consensus 32 l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 32 VNDQVAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 3455667777777777777777777776653
No 45
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=75.05 E-value=10 Score=24.48 Aligned_cols=31 Identities=23% Similarity=0.418 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027214 153 NSALQRLKDERDAAVRQTQLLQQDLDMLKRR 183 (226)
Q Consensus 153 ~~~i~~L~eE~~~~~~en~~L~~el~~lr~~ 183 (226)
++....|.++.+++.+||+.|+.|+..|+..
T Consensus 11 K~~yd~Lk~~~~~L~~E~~~L~aev~~L~~k 41 (45)
T PF02183_consen 11 KASYDSLKAEYDSLKKENEKLRAEVQELKEK 41 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3345688888888888888888888877654
No 46
>PRK00523 hypothetical protein; Provisional
Probab=74.98 E-value=3.7 Score=29.31 Aligned_cols=18 Identities=17% Similarity=0.349 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 027214 194 LMFAAFVGLIGIMVGLIL 211 (226)
Q Consensus 194 ~~~v~lv~lla~~lG~~l 211 (226)
++.+++.+|+|+++|||+
T Consensus 8 I~l~i~~li~G~~~Gffi 25 (72)
T PRK00523 8 LGLGIPLLIVGGIIGYFV 25 (72)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444455555555554
No 47
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=74.75 E-value=7.6 Score=27.06 Aligned_cols=30 Identities=20% Similarity=0.418 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027214 152 ANSALQRLKDERDAAVRQTQLLQQDLDMLK 181 (226)
Q Consensus 152 ~~~~i~~L~eE~~~~~~en~~L~~el~~lr 181 (226)
....+..++.+++.++++|+.|+++++.|+
T Consensus 22 ~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~ 51 (80)
T PF04977_consen 22 LNQEIAELQKEIEELKKENEELKEEIERLK 51 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345677888888888888888888887773
No 48
>PRK10404 hypothetical protein; Provisional
Probab=74.08 E-value=15 Score=27.83 Aligned_cols=21 Identities=19% Similarity=0.303 Sum_probs=15.6
Q ss_pred chHHHHHHHHHHHHHHHHHHh
Q 027214 192 FSLMFAAFVGLIGIMVGLILN 212 (226)
Q Consensus 192 ~s~~~v~lv~lla~~lG~~l~ 212 (226)
-|+..+-+.+.+||+||++++
T Consensus 79 ~Pw~avGiaagvGlllG~Ll~ 99 (101)
T PRK10404 79 KPWQGIGVGAAVGLVLGLLLA 99 (101)
T ss_pred CcHHHHHHHHHHHHHHHHHHh
Confidence 367777777778888888764
No 49
>PF00927 Transglut_C: Transglutaminase family, C-terminal ig like domain; InterPro: IPR008958 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Transglutaminases catalyse the post-translational modification of proteins at glutamine residues, with formation of isopeptide bonds. Members of the transglutaminase family usually have three domains: N-terminal (IPR001102 from INTERPRO), middle (IPR013808 from INTERPRO) and C-terminal. The middle domain is usually well conserved, but family members can display major differences in their N- and C-terminal domains, although their overall structure is conserved []. This entry represents the C-terminal domain found in transglutaminases, which consists of an immunoglobulin-like beta-sandwich consisting of seven strands in two sheets with a Greek key topology. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. Protein-glutamine gamma-glutamyltransferases (2.3.2.13 from EC) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ].; GO: 0003810 protein-glutamine gamma-glutamyltransferase activity, 0018149 peptide cross-linking; PDB: 2XZZ_A 1GGY_B 1FIE_B 1GGU_B 1GGT_B 1F13_A 1QRK_B 1EVU_A 1EX0_B 1L9N_B ....
Probab=73.88 E-value=18 Score=26.83 Aligned_cols=55 Identities=15% Similarity=0.176 Sum_probs=39.1
Q ss_pred cCceeEeEEEEEcCCCCe--------EEEEEEeCCCC--cEEEeCCeeeeCCCCeEEEEEEeccc
Q 027214 23 LEKQGFCDLKVINNTEHH--------VAFKVKTTSPK--KYFVRPNTGVVQPWDSCIIRVTLQAQ 77 (226)
Q Consensus 23 ~~~~~~~~l~L~N~s~~~--------vaFKVKTT~p~--~Y~VrP~~G~I~P~~s~~I~V~l~~~ 77 (226)
.++.....++++|+++.+ .++-|-=|.-. ....+-..+-|.||++..+.+.+.+.
T Consensus 13 vG~d~~v~v~~~N~~~~~l~~v~~~l~~~~v~ytG~~~~~~~~~~~~~~l~p~~~~~~~~~i~p~ 77 (107)
T PF00927_consen 13 VGQDFTVSVSFTNPSSEPLRNVSLNLCAFTVEYTGLTRDQFKKEKFEVTLKPGETKSVEVTITPS 77 (107)
T ss_dssp TTSEEEEEEEEEE-SSS-EECEEEEEEEEEEECTTTEEEEEEEEEEEEEE-TTEEEEEEEEE-HH
T ss_pred CCCCEEEEEEEEeCCcCccccceeEEEEEEEEECCcccccEeEEEcceeeCCCCEEEEEEEEEce
Confidence 467889999999999877 55555444322 24677889999999999999999874
No 50
>PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins.; GO: 0004629 phospholipase C activity, 0016042 lipid catabolic process
Probab=72.35 E-value=16 Score=26.46 Aligned_cols=46 Identities=24% Similarity=0.172 Sum_probs=32.7
Q ss_pred eEeEEEEEcCCCCeEEEEEEeCCCCcEE-EeCCeeeeCCCCeEEEEEEec
Q 027214 27 GFCDLKVINNTEHHVAFKVKTTSPKKYF-VRPNTGVVQPWDSCIIRVTLQ 75 (226)
Q Consensus 27 ~~~~l~L~N~s~~~vaFKVKTT~p~~Y~-VrP~~G~I~P~~s~~I~V~l~ 75 (226)
..-.|+|.|.+...+.|.|... .|. -.|-.=.|.||++..+..-+.
T Consensus 20 g~l~l~l~N~g~~~~~~~v~~~---~y~~~~~~~~~v~ag~~~~~~w~l~ 66 (89)
T PF05506_consen 20 GNLRLTLSNPGSAAVTFTVYDN---AYGGGGPWTYTVAAGQTVSLTWPLA 66 (89)
T ss_pred CEEEEEEEeCCCCcEEEEEEeC---CcCCCCCEEEEECCCCEEEEEEeec
Confidence 3668999999999999999872 122 233444556688888887763
No 51
>PRK01844 hypothetical protein; Provisional
Probab=71.37 E-value=4.3 Score=29.01 Aligned_cols=23 Identities=17% Similarity=0.657 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcc
Q 027214 194 LMFAAFVGLIGIMVGLILNLLLS 216 (226)
Q Consensus 194 ~~~v~lv~lla~~lG~~l~~~~~ 216 (226)
+...+++.++++++|.++|+.++
T Consensus 3 ~~~~I~l~I~~li~G~~~Gff~a 25 (72)
T PRK01844 3 IWLGILVGVVALVAGVALGFFIA 25 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778999999999999998763
No 52
>PRK10132 hypothetical protein; Provisional
Probab=71.06 E-value=18 Score=27.74 Aligned_cols=21 Identities=19% Similarity=0.352 Sum_probs=15.9
Q ss_pred chHHHHHHHHHHHHHHHHHHh
Q 027214 192 FSLMFAAFVGLIGIMVGLILN 212 (226)
Q Consensus 192 ~s~~~v~lv~lla~~lG~~l~ 212 (226)
-|+..+-+.+.+||+||++++
T Consensus 85 ~Pw~svgiaagvG~llG~Ll~ 105 (108)
T PRK10132 85 RPWCSVGTAAAVGIFIGALLS 105 (108)
T ss_pred CcHHHHHHHHHHHHHHHHHHh
Confidence 467777777888888888764
No 53
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=70.94 E-value=2.7 Score=28.78 Aligned_cols=23 Identities=30% Similarity=0.460 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhccC
Q 027214 195 MFAAFVGLIGIMVGLILNLLLSS 217 (226)
Q Consensus 195 ~~v~lv~lla~~lG~~l~~~~~~ 217 (226)
+...++.++++++|.+++.+++.
T Consensus 18 ~pl~l~il~~f~~G~llg~l~~~ 40 (68)
T PF06305_consen 18 LPLGLLILIAFLLGALLGWLLSL 40 (68)
T ss_pred chHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666667766666654
No 54
>PRK00523 hypothetical protein; Provisional
Probab=70.86 E-value=4.6 Score=28.82 Aligned_cols=24 Identities=25% Similarity=0.372 Sum_probs=20.3
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhcc
Q 027214 193 SLMFAAFVGLIGIMVGLILNLLLS 216 (226)
Q Consensus 193 s~~~v~lv~lla~~lG~~l~~~~~ 216 (226)
-+..+++++++++++|.+.|+.++
T Consensus 3 ~~~l~I~l~i~~li~G~~~Gffia 26 (72)
T PRK00523 3 AIGLALGLGIPLLIVGGIIGYFVS 26 (72)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456789999999999999998764
No 55
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=70.84 E-value=3.7 Score=28.71 Aligned_cols=17 Identities=12% Similarity=0.522 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHh
Q 027214 196 FAAFVGLIGIMVGLILN 212 (226)
Q Consensus 196 ~v~lv~lla~~lG~~l~ 212 (226)
.+++.+|+|+++|||+.
T Consensus 2 ~iilali~G~~~Gff~a 18 (64)
T PF03672_consen 2 LIILALIVGAVIGFFIA 18 (64)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 45677778888888763
No 56
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=70.52 E-value=15 Score=24.21 Aligned_cols=28 Identities=21% Similarity=0.349 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027214 155 ALQRLKDERDAAVRQTQLLQQDLDMLKR 182 (226)
Q Consensus 155 ~i~~L~eE~~~~~~en~~L~~el~~lr~ 182 (226)
.+..|..++..|..+|..|++++..|++
T Consensus 26 ~~~~le~~~~~L~~en~~L~~~i~~L~~ 53 (54)
T PF07716_consen 26 REEELEQEVQELEEENEQLRQEIAQLER 53 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4567788888888888888888887764
No 57
>PRK09400 secE preprotein translocase subunit SecE; Reviewed
Probab=69.58 E-value=16 Score=25.15 Aligned_cols=17 Identities=24% Similarity=0.413 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHhhhcc
Q 027214 200 VGLIGIMVGLILNLLLS 216 (226)
Q Consensus 200 v~lla~~lG~~l~~~~~ 216 (226)
-.++--+|||+++++.+
T Consensus 42 G~~i~G~iGf~Ikli~~ 58 (61)
T PRK09400 42 GILLIGLIGFIIYLIMT 58 (61)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344467888887754
No 58
>PF02753 PapD_C: Pili assembly chaperone PapD, C-terminal domain; InterPro: IPR016148 Most Gram-negative bacteria possess a supramolecular structure - the pili - on their surface, which mediates attachment to specific receptors. Many interactive subunits are required to assemble pili, but their assembly only takes place after translocation across the cytoplasmic membrane. Periplasmic chaperones assist pili assembly by binding to the subunits, thereby preventing premature aggregation [, ]. Pili chaperones are structurally, and possibly evolutionarily, related to the immunoglobulin superfamily [, ]: they contain two globular domains, with a topology identical to an immunoglobulin fold. This entry represents the C-terminal domain of pili assembly chaperone, and has a beta-sandwich fold consisting of eight strands in two sheets with a Greek key topology.; GO: 0007047 cellular cell wall organization, 0030288 outer membrane-bounded periplasmic space; PDB: 2UY7_C 2UY6_A 2W07_A 3GFU_A 3F65_F 3F6L_A 3F6I_A 3GEW_B 1PDK_A 2XG4_A ....
Probab=69.12 E-value=5.2 Score=27.38 Aligned_cols=44 Identities=25% Similarity=0.255 Sum_probs=28.4
Q ss_pred EEEEcCCCCeEEEE-EEeCCCCcEEEeCCeeeeCCCCeEEEEEEe
Q 027214 31 LKVINNTEHHVAFK-VKTTSPKKYFVRPNTGVVQPWDSCIIRVTL 74 (226)
Q Consensus 31 l~L~N~s~~~vaFK-VKTT~p~~Y~VrP~~G~I~P~~s~~I~V~l 74 (226)
|++.|+|..+|.|- ++....++=..-...++|.|+++..+.+.-
T Consensus 1 L~v~NpTPy~vtl~~~~~~~~~~~~~~~~~~mi~P~s~~~~~~~~ 45 (68)
T PF02753_consen 1 LTVKNPTPYYVTLSSLKLNGGGKKKKIDNSGMIAPFSSKSFPLPA 45 (68)
T ss_dssp EEEEE-SSS-EEEEEEEETHHHCCEECCCETEE-TTEEEEEETST
T ss_pred CEEECCCCcEEEEEeeeecccccccccCCceEECCCCceEEeccC
Confidence 68999999999986 444434433333445599999999887663
No 59
>PF02404 SCF: Stem cell factor; InterPro: IPR003452 Stem cell factor (SCF) is a homodimer involved in hematopoiesis. SCF binds to and activates the SCF receptor (SCFR), a receptor tyrosine kinase. SCF stimulates the proliferation of mast cells and is able to augment the proliferation of both myeloid and lymphoid hematopoietic progenitors in bone marrow culture. It also mediates cell-cell adhesion and acts synergistically with other cytokines. SCF is a type I membrane protein, but is also found in a secretable, soluble form. The crystal structure of human SCF has been resolved and a potential receptor-binding site identified [].; GO: 0005173 stem cell factor receptor binding, 0007155 cell adhesion, 0016020 membrane; PDB: 1EXZ_A 1SCF_D 2E9W_C 2O26_A 2O27_A.
Probab=68.78 E-value=1.6 Score=38.56 Aligned_cols=25 Identities=20% Similarity=0.417 Sum_probs=0.0
Q ss_pred CchHHHHHHHHHHHHHHHHHHhhhc
Q 027214 191 GFSLMFAAFVGLIGIMVGLILNLLL 215 (226)
Q Consensus 191 g~s~~~v~lv~lla~~lG~~l~~~~ 215 (226)
+..+..++|.+|++++||+++|.++
T Consensus 212 slq~~~iAL~sl~SLVIGFvlG~l~ 236 (273)
T PF02404_consen 212 SLQWPAIALPSLFSLVIGFVLGALY 236 (273)
T ss_dssp -------------------------
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHH
Confidence 4446667899999999999999985
No 60
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=67.50 E-value=6.9 Score=27.79 Aligned_cols=20 Identities=15% Similarity=0.494 Sum_probs=15.7
Q ss_pred hHHHHHHHHHHHHHHHHHHh
Q 027214 193 SLMFAAFVGLIGIMVGLILN 212 (226)
Q Consensus 193 s~~~v~lv~lla~~lG~~l~ 212 (226)
-++.+++..|+|+++|||+-
T Consensus 6 ail~ivl~ll~G~~~G~fia 25 (71)
T COG3763 6 AILLIVLALLAGLIGGFFIA 25 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 35677888888999999873
No 61
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=67.15 E-value=15 Score=28.10 Aligned_cols=25 Identities=28% Similarity=0.357 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 027214 156 LQRLKDERDAAVRQTQLLQQDLDML 180 (226)
Q Consensus 156 i~~L~eE~~~~~~en~~L~~el~~l 180 (226)
+..|.+|..+|+-||.+|++.+..+
T Consensus 31 ~~~l~EEN~~L~~EN~~Lr~~l~~~ 55 (107)
T PF06156_consen 31 LQELLEENARLRIENEHLRERLEEL 55 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444555555444443
No 62
>PF07790 DUF1628: Protein of unknown function (DUF1628); InterPro: IPR012859 The sequences making up this family are derived from hypothetical proteins of unknown function expressed by various archaeal species. The region in question is approximately 160 residues long.
Probab=66.59 E-value=7.3 Score=27.70 Aligned_cols=29 Identities=31% Similarity=0.500 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCCCCCCCC
Q 027214 194 LMFAAFVGLIGIMVGLILNLLLSSPPPTVPQ 224 (226)
Q Consensus 194 ~~~v~lv~lla~~lG~~l~~~~~~~~~~~~~ 224 (226)
++.++.|+++|++..|+++. ..++...|+
T Consensus 11 LliaitVilaavv~~~~~~~--~~~~~~~P~ 39 (80)
T PF07790_consen 11 LLIAITVILAAVVGAFVFGL--DSSPESPPQ 39 (80)
T ss_pred HHHHHHHHHHHHHHHHHhcc--cCCCCCCCE
Confidence 44556666666666666665 444444443
No 63
>PF02883 Alpha_adaptinC2: Adaptin C-terminal domain; InterPro: IPR008152 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. AP (adaptor protein) complexes are found in coated vesicles and clathrin-coated pits. AP complexes connect cargo proteins and lipids to clathrin at vesicle budding sites, as well as binding accessory proteins that regulate coat assembly and disassembly (such as AP180, epsins and auxilin). There are different AP complexes in mammals. AP1 is responsible for the transport of lysosomal hydrolases between the TGN and endosomes []. AP2 associates with the plasma membrane and is responsible for endocytosis []. AP3 is responsible for protein trafficking to lysosomes and other related organelles []. AP4 is less well characterised. AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). For example, in AP1 these subunits are gamma-1-adaptin, beta-1-adaptin, mu-1 and sigma-1, while in AP2 they are alpha-adaptin, beta-2-adaptin, mu-2 and sigma-2. Each subunit has a specific function. Adaptins recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal ear (appendage) domains. Mu recognises tyrosine-based sorting signals within the cytoplasmic domains of transmembrane cargo proteins []. One function of clathrin and AP2 complex-mediated endocytosis is to regulate the number of GABA(A) receptors available at the cell surface []. GGAs (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) are a family of monomeric clathrin adaptor proteins that are conserved from yeasts to humans. GGAs regulate clathrin-mediated the transport of proteins (such as mannose 6-phosphate receptors) from the TGN to endosomes and lysosomes through interactions with TGN-sorting receptors, sometimes in conjunction with AP-1 [, ]. GGAs bind cargo, membranes, clathrin and accessory factors. GGA1, GGA2 and GGA3 all contain a domain homologous to the ear domain of gamma-adaptin. GGAs are composed of a single polypeptide with four domains: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The VHS domain is responsible for endocytosis and signal transduction, recognising transmembrane cargo through the ACLL sequence in the cytoplasmic domains of sorting receptors []. The GAT domain (also found in Tom1 proteins) interacts with ARF (ADP-ribosylation factor) to regulate membrane trafficking [], and with ubiquitin for receptor sorting []. The hinge region contains a clathrin box for recognition and binding to clathrin, similar to that found in AP adaptins. The GAE domain is similar to the AP gamma-adaptin ear domain, and is responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. This entry represents a beta-sandwich structural motif found in the appendage (ear) domain of alpha-, beta- and gamma-adaptin from AP clathrin adaptor complexes, and the GAE (gamma-adaptin ear) domain of GGA adaptor proteins. These domains have an immunoglobulin-like beta-sandwich fold containing 7 or 8 strands in 2 beta-sheets in a Greek key topology [, ]. Although these domains share a similar fold, there is little sequence identity between the alpha/beta-adaptins and gamma-adaptin/GAE. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030131 clathrin adaptor complex; PDB: 3MNM_B 3ZY7_B 1GYU_A 1GYW_B 2A7B_A 1GYV_A 2E9G_A 1E42_B 2G30_A 2IV9_B ....
Probab=66.57 E-value=28 Score=26.01 Aligned_cols=81 Identities=16% Similarity=0.268 Sum_probs=46.1
Q ss_pred eEEeeec---CceeEeEEEEEcCCCCeEE-EEEEeCCCCc--EEEeCC-eeeeCCCCeEEEEEEecc-ccCCCCCCCCCC
Q 027214 17 LKFIFEL---EKQGFCDLKVINNTEHHVA-FKVKTTSPKK--YFVRPN-TGVVQPWDSCIIRVTLQA-QRESPPDMQCKD 88 (226)
Q Consensus 17 L~F~~~~---~~~~~~~l~L~N~s~~~va-FKVKTT~p~~--Y~VrP~-~G~I~P~~s~~I~V~l~~-~~~~p~~~~~~d 88 (226)
+.|.... .....-.++..|.+..++. |.+.-..|+. ..+.|. ...|+|+..+.-.+.+.. ....+.....+=
T Consensus 13 I~~~~~~~~~~~~~~i~~~f~N~s~~~it~f~~q~avpk~~~l~l~~~s~~~i~p~~~i~Q~~~v~~~~~~~~~~~~l~~ 92 (115)
T PF02883_consen 13 IGFKSEKSPNPNQGRIKLTFGNKSSQPITNFSFQAAVPKSFKLQLQPPSSSTIPPGQQITQVIKVENSPFSEPTPKPLKP 92 (115)
T ss_dssp EEEEEEECCETTEEEEEEEEEE-SSS-BEEEEEEEEEBTTSEEEEEESS-SSB-TTTEEEEEEEEEESS-BSTTSSTTEE
T ss_pred EEEEEEecCCCCEEEEEEEEEECCCCCcceEEEEEEeccccEEEEeCCCCCeeCCCCeEEEEEEEEEeecccCCCCCcCe
Confidence 4444443 4577889999999987776 7777666664 455566 459999887765555444 111122223345
Q ss_pred eEEEEEEec
Q 027214 89 KFLLQSTIV 97 (226)
Q Consensus 89 KFlVqs~~~ 97 (226)
|+.|.+..-
T Consensus 93 ~~~vsy~~~ 101 (115)
T PF02883_consen 93 RLRVSYNVG 101 (115)
T ss_dssp EEEEEEEET
T ss_pred EEEEEEEEC
Confidence 566665553
No 64
>PF04744 Monooxygenase_B: Monooxygenase subunit B protein; InterPro: IPR006833 Ammonia monooxygenase and the particulate methane monooxygenase are both integral membrane proteins, occurring in ammonia oxidisers and methanotrophs respectively, which are thought to be evolutionarily related []. These enzymes have a relatively wide substrate specificity and can catalyse the oxidation of a range of substrates including ammonia, methane, halogenated hydrocarbons and aromatic molecules []. These enzymes are composed of 3 subunits - A (IPR003393 from INTERPRO), B (IPR006833 from INTERPRO) and C (IPR006980 from INTERPRO) - and contain various metal centres, including copper. Particulate methane monooxygenase from Methylococcus capsulatus str. Bath is an ABC homotrimer, which contains mononuclear and dinuclear copper metal centres, and a third metal centre containing a metal ion whose identity in vivo is not certain[]. The soluble regions of these enzymes derive primarily from the B subunit. This subunit forms two antiparallel beta-barrel-like structures and contains the mono- and di- nuclear copper metal centres [].; PDB: 3CHX_E 3RFR_A 3RGB_A 1YEW_A.
Probab=66.32 E-value=29 Score=32.35 Aligned_cols=65 Identities=18% Similarity=0.239 Sum_probs=43.2
Q ss_pred EEEecCeeEEeeecCceeEeEEEEEcCCCCeEEEEEEeCCCCcEE----------------------EeCCeeeeCCCCe
Q 027214 10 ISVHPEELKFIFELEKQGFCDLKVINNTEHHVAFKVKTTSPKKYF----------------------VRPNTGVVQPWDS 67 (226)
Q Consensus 10 L~i~P~eL~F~~~~~~~~~~~l~L~N~s~~~vaFKVKTT~p~~Y~----------------------VrP~~G~I~P~~s 67 (226)
+.++-..-.|.- .++..+-.++++|+++++|-..==+|+.-+|. |.|+ +=|.||++
T Consensus 249 V~~~v~~A~Y~v-pgR~l~~~l~VtN~g~~pv~LgeF~tA~vrFln~~v~~~~~~~P~~l~A~~gL~vs~~-~pI~PGET 326 (381)
T PF04744_consen 249 VKVKVTDATYRV-PGRTLTMTLTVTNNGDSPVRLGEFNTANVRFLNPDVPTDDPDYPDELLAERGLSVSDN-SPIAPGET 326 (381)
T ss_dssp EEEEEEEEEEES-SSSEEEEEEEEEEESSS-BEEEEEESSS-EEE-TTT-SS-S---TTTEETT-EEES---S-B-TT-E
T ss_pred eEEEEeccEEec-CCcEEEEEEEEEcCCCCceEeeeEEeccEEEeCcccccCCCCCchhhhccCcceeCCC-CCcCCCce
Confidence 555555566665 47788999999999999999886666555543 3333 35899999
Q ss_pred EEEEEEecc
Q 027214 68 CIIRVTLQA 76 (226)
Q Consensus 68 ~~I~V~l~~ 76 (226)
.++.|..+.
T Consensus 327 rtl~V~a~d 335 (381)
T PF04744_consen 327 RTLTVEAQD 335 (381)
T ss_dssp EEEEEEEE-
T ss_pred EEEEEEeeh
Confidence 999999875
No 65
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=66.16 E-value=11 Score=30.75 Aligned_cols=19 Identities=21% Similarity=0.328 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHhc
Q 027214 166 AVRQTQLLQQDLDMLKRRG 184 (226)
Q Consensus 166 ~~~en~~L~~el~~lr~~~ 184 (226)
++++.++|.+|++.+.+..
T Consensus 71 l~Rk~~kl~~el~~~~~~~ 89 (161)
T PF04420_consen 71 LNRKLDKLEEELEKLNKSL 89 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4445555666665555443
No 66
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=66.14 E-value=25 Score=26.86 Aligned_cols=21 Identities=19% Similarity=0.412 Sum_probs=15.4
Q ss_pred chHHHHHHHHHHHHHHHHHHh
Q 027214 192 FSLMFAAFVGLIGIMVGLILN 212 (226)
Q Consensus 192 ~s~~~v~lv~lla~~lG~~l~ 212 (226)
-|+.-|-+.+-+||+||.+|.
T Consensus 82 ~PWq~VGvaAaVGlllGlLls 102 (104)
T COG4575 82 NPWQGVGVAAAVGLLLGLLLS 102 (104)
T ss_pred CCchHHHHHHHHHHHHHHHHh
Confidence 367777777778888887764
No 67
>TIGR02745 ccoG_rdxA_fixG cytochrome c oxidase accessory protein FixG. Member of this ferredoxin-like protein family are found exclusively in species with an operon encoding the cbb3 type of cytochrome c oxidase (cco-cbb3), and near the cco-cbb3 operon in about half the cases. The cco-cbb3 is found in a variety of proteobacteria and almost nowhere else, and is associated with oxygen use under microaerobic conditions. Some (but not all) of these proteobacteria are also nitrogen-fixing, hence the gene symbol fixG. FixG was shown essential for functional cco-cbb3 expression in Bradyrhizobium japonicum.
Probab=65.97 E-value=93 Score=29.62 Aligned_cols=72 Identities=15% Similarity=0.192 Sum_probs=46.6
Q ss_pred CCccEEEecC-eeEEeeecCc--eeEeEEEEEcCCCCeEEEEEEeCCCCcEEEe-C-CeeeeCCCCeEEEEEEeccc
Q 027214 6 GNQLISVHPE-ELKFIFELEK--QGFCDLKVINNTEHHVAFKVKTTSPKKYFVR-P-NTGVVQPWDSCIIRVTLQAQ 77 (226)
Q Consensus 6 ~~~lL~i~P~-eL~F~~~~~~--~~~~~l~L~N~s~~~vaFKVKTT~p~~Y~Vr-P-~~G~I~P~~s~~I~V~l~~~ 77 (226)
+.-.+.|... ..-|..-.++ .-...++|.|.+.++..|.++........+. + +.=.|+||+..++.|++...
T Consensus 324 ~~~~~~v~r~r~~l~~~~~~g~i~N~Y~~~i~Nk~~~~~~~~l~v~g~~~~~~~~~~~~i~v~~g~~~~~~v~v~~~ 400 (434)
T TIGR02745 324 EPMDLNVLRDRNLLYVRNSDGVVENTYTLKILNKTEQPHEYYLSVLGLPGIKIEGPGAPIHVKAGEKVKLPVFLRTP 400 (434)
T ss_pred CceEEEEEecCCcceEECCCCcEEEEEEEEEEECCCCCEEEEEEEecCCCcEEEcCCceEEECCCCEEEEEEEEEec
Confidence 3444555554 3223322222 3467999999999988888887764433332 2 34589999999888887664
No 68
>PF11611 DUF4352: Domain of unknown function (DUF4352); InterPro: IPR021652 This entry is represented by Bacteriophage A118, Gp32. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry represents a group of putative lipoproteins of unknown function.; PDB: 3CFU_A.
Probab=64.70 E-value=35 Score=25.38 Aligned_cols=52 Identities=21% Similarity=0.264 Sum_probs=33.5
Q ss_pred ceeEeEEEEEcCCCCeEE-----EEEEeCCCCcEEEeC---------CeeeeCCCCeEEEEEEecc
Q 027214 25 KQGFCDLKVINNTEHHVA-----FKVKTTSPKKYFVRP---------NTGVVQPWDSCIIRVTLQA 76 (226)
Q Consensus 25 ~~~~~~l~L~N~s~~~va-----FKVKTT~p~~Y~VrP---------~~G~I~P~~s~~I~V~l~~ 76 (226)
+-+.-.++++|.++.++. |++.+.+-+.|.... ..+-|.||+++.-.+....
T Consensus 36 ~fv~v~v~v~N~~~~~~~~~~~~f~l~d~~g~~~~~~~~~~~~~~~~~~~~i~pG~~~~g~l~F~v 101 (123)
T PF11611_consen 36 KFVVVDVTVKNNGDEPLDFSPSDFKLYDSDGNKYDPDFSASSNDNDLFSETIKPGESVTGKLVFEV 101 (123)
T ss_dssp EEEEEEEEEEE-SSS-EEEEGGGEEEE-TT--B--EEE-CCCTTTB--EEEE-TT-EEEEEEEEEE
T ss_pred EEEEEEEEEEECCCCcEEecccceEEEeCCCCEEcccccchhccccccccEECCCCEEEEEEEEEE
Confidence 346778999999998776 788877777777554 4589999999999998765
No 69
>PF05753 TRAP_beta: Translocon-associated protein beta (TRAPB); InterPro: IPR008856 This family consists of several eukaryotic translocon-associated protein beta (TRAPB) or signal sequence receptor beta subunit (SSR-beta) proteins. The normal translocation of nascent polypeptides into the lumen of the endoplasmic reticulum (ER) is thought to be aided in part by a translocon-associated protein (TRAP) complex consisting of 4 protein subunits. The association of mature proteins with the ER and Golgi, or other intracellular locales, such as lysosomes, depends on the initial targeting of the nascent polypeptide to the ER membrane. A similar scenario must also exist for proteins destined for secretion [].; GO: 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=64.25 E-value=75 Score=26.51 Aligned_cols=53 Identities=11% Similarity=0.114 Sum_probs=36.6
Q ss_pred cCceeEeEEEEEcCCCCeEEEEEEeCCC----CcEEEeC-----CeeeeCCCCeEEEEEEecc
Q 027214 23 LEKQGFCDLKVINNTEHHVAFKVKTTSP----KKYFVRP-----NTGVVQPWDSCIIRVTLQA 76 (226)
Q Consensus 23 ~~~~~~~~l~L~N~s~~~vaFKVKTT~p----~~Y~VrP-----~~G~I~P~~s~~I~V~l~~ 76 (226)
.++..+..++|+|.++. -||.|+-++. +.|-+-- ....|+||+++.-.+++.|
T Consensus 36 ~g~~v~V~~~iyN~G~~-~A~dV~l~D~~fp~~~F~lvsG~~s~~~~~i~pg~~vsh~~vv~p 97 (181)
T PF05753_consen 36 EGEDVTVTYTIYNVGSS-AAYDVKLTDDSFPPEDFELVSGSLSASWERIPPGENVSHSYVVRP 97 (181)
T ss_pred CCcEEEEEEEEEECCCC-eEEEEEEECCCCCccccEeccCceEEEEEEECCCCeEEEEEEEee
Confidence 46788999999999877 7999999882 3444321 2355666666666666665
No 70
>smart00338 BRLZ basic region leucin zipper.
Probab=63.52 E-value=22 Score=24.20 Aligned_cols=29 Identities=14% Similarity=0.401 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027214 155 ALQRLKDERDAAVRQTQLLQQDLDMLKRR 183 (226)
Q Consensus 155 ~i~~L~eE~~~~~~en~~L~~el~~lr~~ 183 (226)
.+..|..+...+..+|..|+.++..|+..
T Consensus 27 ~~~~Le~~~~~L~~en~~L~~~~~~l~~e 55 (65)
T smart00338 27 EIEELERKVEQLEAENERLKKEIERLRRE 55 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777777777777666644
No 71
>PRK15308 putative fimbrial protein TcfA; Provisional
Probab=63.36 E-value=1e+02 Score=26.86 Aligned_cols=87 Identities=14% Similarity=0.157 Sum_probs=62.2
Q ss_pred CCccEEEecCeeEEeeecCceeEeEEEEEcCCCCeEEEEEEe---CCC---------------CcEEEeCCeeeeCCCCe
Q 027214 6 GNQLISVHPEELKFIFELEKQGFCDLKVINNTEHHVAFKVKT---TSP---------------KKYFVRPNTGVVQPWDS 67 (226)
Q Consensus 6 ~~~lL~i~P~eL~F~~~~~~~~~~~l~L~N~s~~~vaFKVKT---T~p---------------~~Y~VrP~~G~I~P~~s 67 (226)
...-|.|.|-.+.+... .+..+.++|+|.++.+..++|.. ++| ..-.+-|..-.|.||++
T Consensus 14 aaa~l~V~Pi~~~i~a~--~~~~~~v~V~N~g~~~~~vqV~v~r~~~PG~~~e~~~~~~~~~~~eLiaSP~~l~L~pg~~ 91 (234)
T PRK15308 14 ARANMLVYPMAAEIGAG--REEATSLFVYSKSDHTQYVRTRIKRIEHPATPQEKEVPAGNDIETGLVVSPEKFALPAGTT 91 (234)
T ss_pred hhceEEEEEeEEEecCC--CcceEEEEEEeCCCCcEEEEEEEEEEcCCCCCCCcccccccCCCCcEEEcCceeEECCCCe
Confidence 34568899987777542 24567999999999888777642 222 24678899999999999
Q ss_pred EEEEEEeccccCCCCCCCCCCeEEEEEEecCCC
Q 027214 68 CIIRVTLQAQRESPPDMQCKDKFLLQSTIVPSN 100 (226)
Q Consensus 68 ~~I~V~l~~~~~~p~~~~~~dKFlVqs~~~~~~ 100 (226)
..|.+..... ++ ...-|.|...+++..
T Consensus 92 q~IRli~lg~----~~--kE~~YRl~~~pvp~~ 118 (234)
T PRK15308 92 RTVRVISLQA----PE--REEAWRVYFEPVAEL 118 (234)
T ss_pred EEEEEEEcCC----CC--cEEEEEEEEEecCCc
Confidence 9999887652 12 234577777777653
No 72
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=62.89 E-value=26 Score=24.89 Aligned_cols=19 Identities=16% Similarity=0.177 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 027214 152 ANSALQRLKDERDAAVRQT 170 (226)
Q Consensus 152 ~~~~i~~L~eE~~~~~~en 170 (226)
+...|..|+.|+..++++|
T Consensus 16 aveti~~Lq~e~eeLke~n 34 (72)
T PF06005_consen 16 AVETIALLQMENEELKEKN 34 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555443
No 73
>PF11120 DUF2636: Protein of unknown function (DUF2636); InterPro: IPR019995 Members of this protein family are found invariably together with genes of bacterial cellulose biosynthesis, and are presumed to be involved in the process []. Members average about 63 amino acids in length and are not uncharacterised. The gene has been designated both YhjT and BcsF (bacterial cellulose synthesis F).
Probab=62.34 E-value=10 Score=26.29 Aligned_cols=21 Identities=14% Similarity=0.200 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q 027214 194 LMFAAFVGLIGIMVGLILNLL 214 (226)
Q Consensus 194 ~~~v~lv~lla~~lG~~l~~~ 214 (226)
+..+++.|++.|.+||++.-.
T Consensus 7 iQii~l~AlI~~pLGyl~~~~ 27 (62)
T PF11120_consen 7 IQIIILCALIFFPLGYLARRW 27 (62)
T ss_pred HHHHHHHHHHHHhHHHHHHHH
Confidence 446789999999999998643
No 74
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=61.67 E-value=21 Score=25.37 Aligned_cols=28 Identities=32% Similarity=0.336 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027214 153 NSALQRLKDERDAAVRQTQLLQQDLDML 180 (226)
Q Consensus 153 ~~~i~~L~eE~~~~~~en~~L~~el~~l 180 (226)
...+..++.++..+..+|.+|+.|...|
T Consensus 30 ~~~~~~~~~~~~~l~~en~~L~~ei~~l 57 (85)
T TIGR02209 30 NNELQKLQLEIDKLQKEWRDLQLEVAEL 57 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456677777777777777777776554
No 75
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=61.54 E-value=19 Score=27.75 Aligned_cols=28 Identities=25% Similarity=0.323 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027214 153 NSALQRLKDERDAAVRQTQLLQQDLDML 180 (226)
Q Consensus 153 ~~~i~~L~eE~~~~~~en~~L~~el~~l 180 (226)
++.+..|.||..+|+-||++|++.+..+
T Consensus 28 K~~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 28 KKQLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445566666666666666666666554
No 76
>PF10482 CtIP_N: Tumour-suppressor protein CtIP N-terminal domain; InterPro: IPR019518 CtIP is predominantly a nuclear protein that complexes with both BRCA1 and the BRCA1-associated RING domain protein (BARD1). At the protein level, CtIP expression varies with cell cycle progression in a pattern identical to that of BRCA1. Thus, the steady-state levels of CtIP polypeptides, which remain low in resting cells and G1 cycling cells, increase dramatically as Dividing cells traverse the G1/S boundary. CtIP can potentially modulate the functions ascribed to BRCA1 in transcriptional regulation, DNA repair, and/or cell cycle checkpoint control []. This N-terminal domain carries a coiled-coil region and is essential for homodimerisation of the protein []. The C-terminal domain is family CtIP_C and carries functionally important CxxC and RHR motifs, absence of which lead cells to grow slowly and show hypersensitivity to genotoxins [].
Probab=60.97 E-value=12 Score=29.03 Aligned_cols=24 Identities=17% Similarity=0.335 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 027214 154 SALQRLKDERDAAVRQTQLLQQDL 177 (226)
Q Consensus 154 ~~i~~L~eE~~~~~~en~~L~~el 177 (226)
..|..|+.|++.+.+||.+|++|+
T Consensus 96 q~i~~L~nE~n~L~eEN~~L~eEl 119 (120)
T PF10482_consen 96 QHIFELTNEMNTLKEENKKLKEEL 119 (120)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHh
Confidence 457899999999999999999986
No 77
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=60.59 E-value=24 Score=27.20 Aligned_cols=34 Identities=21% Similarity=0.229 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 027214 152 ANSALQRLKDERDAAVRQTQLLQQDLDMLKRRGQ 185 (226)
Q Consensus 152 ~~~~i~~L~eE~~~~~~en~~L~~el~~lr~~~~ 185 (226)
+.+.+..|+..+..+.+||..|+-|-+.||++..
T Consensus 20 l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~ 53 (110)
T PRK13169 20 LLKELGALKKQLAELLEENTALRLENDKLRERLE 53 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456678888889999999999999999987754
No 78
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=60.50 E-value=21 Score=27.34 Aligned_cols=33 Identities=18% Similarity=0.235 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027214 152 ANSALQRLKDERDAAVRQTQLLQQDLDMLKRRG 184 (226)
Q Consensus 152 ~~~~i~~L~eE~~~~~~en~~L~~el~~lr~~~ 184 (226)
+.+.+..|+..+..+.+||..|+-|-..||.+.
T Consensus 20 l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l 52 (107)
T PF06156_consen 20 LLEELEELKKQLQELLEENARLRIENEHLRERL 52 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678888888999999999999999999874
No 79
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=60.34 E-value=23 Score=34.63 Aligned_cols=27 Identities=30% Similarity=0.398 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027214 156 LQRLKDERDAAVRQTQLLQQDLDMLKR 182 (226)
Q Consensus 156 i~~L~eE~~~~~~en~~L~~el~~lr~ 182 (226)
+++|-.|.+.|+.||..|+++++.+-.
T Consensus 311 Lq~ll~Ene~Lk~ENatLk~qL~~l~~ 337 (655)
T KOG4343|consen 311 LQALLSENEQLKKENATLKRQLDELVS 337 (655)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHhh
Confidence 345555666666666667766666543
No 80
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=59.83 E-value=30 Score=23.43 Aligned_cols=29 Identities=17% Similarity=0.415 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027214 155 ALQRLKDERDAAVRQTQLLQQDLDMLKRR 183 (226)
Q Consensus 155 ~i~~L~eE~~~~~~en~~L~~el~~lr~~ 183 (226)
.+..|.++...+..+|..|+.++..|+..
T Consensus 27 ~~~~Le~~~~~L~~en~~L~~~~~~L~~~ 55 (64)
T PF00170_consen 27 YIEELEEKVEELESENEELKKELEQLKKE 55 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777777776666665543
No 81
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=59.11 E-value=27 Score=24.59 Aligned_cols=15 Identities=13% Similarity=0.434 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHH
Q 027214 168 RQTQLLQQDLDMLKR 182 (226)
Q Consensus 168 ~en~~L~~el~~lr~ 182 (226)
.++.+|++|++.|++
T Consensus 47 ~e~~~Lk~E~e~L~~ 61 (69)
T PF14197_consen 47 EENNKLKEENEALRK 61 (69)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334445555444443
No 82
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=58.74 E-value=35 Score=23.10 Aligned_cols=30 Identities=7% Similarity=0.338 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027214 153 NSALQRLKDERDAAVRQTQLLQQDLDMLKR 182 (226)
Q Consensus 153 ~~~i~~L~eE~~~~~~en~~L~~el~~lr~ 182 (226)
...+.++...++.++.||+.|+++++.+.+
T Consensus 6 En~~~~~~~~i~tvk~en~~i~~~ve~i~e 35 (55)
T PF05377_consen 6 ENELPRIESSINTVKKENEEISESVEKIEE 35 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666777777777777777766554
No 83
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=58.23 E-value=73 Score=23.49 Aligned_cols=29 Identities=24% Similarity=0.407 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027214 155 ALQRLKDERDAAVRQTQLLQQDLDMLKRR 183 (226)
Q Consensus 155 ~i~~L~eE~~~~~~en~~L~~el~~lr~~ 183 (226)
.+..|++++..+.++.+.++.++..++++
T Consensus 71 ~~~~l~~~l~~l~~~~~~~~~~~~~~~~~ 99 (104)
T PF13600_consen 71 ELKELEEELEALEDELAALQDEIQALEAQ 99 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55677777777777777777777766654
No 84
>PF04678 DUF607: Protein of unknown function, DUF607; InterPro: IPR006769 This entry represents the C-terminal domain of coiled-coil domain containing protein 109.
Probab=58.15 E-value=46 Score=27.52 Aligned_cols=30 Identities=7% Similarity=0.124 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027214 155 ALQRLKDERDAAVRQTQLLQQDLDMLKRRG 184 (226)
Q Consensus 155 ~i~~L~eE~~~~~~en~~L~~el~~lr~~~ 184 (226)
....|++.++.+++|.+.|+++...+.+.+
T Consensus 58 ~~~~l~~~l~~~~~el~~le~~k~~id~~A 87 (180)
T PF04678_consen 58 RERQLRKRLEELRQELAPLEKIKQEIDEKA 87 (180)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334566666677777776666655554443
No 85
>PF13807 GNVR: G-rich domain on putative tyrosine kinase
Probab=57.27 E-value=67 Score=22.77 Aligned_cols=19 Identities=21% Similarity=0.216 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 027214 158 RLKDERDAAVRQTQLLQQD 176 (226)
Q Consensus 158 ~L~eE~~~~~~en~~L~~e 176 (226)
+|+.|.+..++-...|.+.
T Consensus 8 ~L~R~~~~~~~~Y~~Ll~r 26 (82)
T PF13807_consen 8 RLQRDVEIKRELYETLLQR 26 (82)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6666666555555555433
No 86
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=57.22 E-value=50 Score=24.29 Aligned_cols=51 Identities=16% Similarity=0.187 Sum_probs=31.4
Q ss_pred EEecCeeEEeeecCceeEeEEEEEcCCCCeEEEEEEeCCCCcEEEeCCeeeeCCCCeEEEEEE
Q 027214 11 SVHPEELKFIFELEKQGFCDLKVINNTEHHVAFKVKTTSPKKYFVRPNTGVVQPWDSCIIRVT 73 (226)
Q Consensus 11 ~i~P~eL~F~~~~~~~~~~~l~L~N~s~~~vaFKVKTT~p~~Y~VrP~~G~I~P~~s~~I~V~ 73 (226)
..+|+++..+. + ....|+++|.++....|-+.. +. -...|.||++..+.++
T Consensus 31 ~f~P~~i~v~~--G--~~v~l~~~N~~~~~h~~~i~~-----~~---~~~~l~~g~~~~~~f~ 81 (104)
T PF13473_consen 31 GFSPSTITVKA--G--QPVTLTFTNNDSRPHEFVIPD-----LG---ISKVLPPGETATVTFT 81 (104)
T ss_dssp EEES-EEEEET--T--CEEEEEEEE-SSS-EEEEEGG-----GT---EEEEE-TT-EEEEEEE
T ss_pred eEecCEEEEcC--C--CeEEEEEEECCCCcEEEEECC-----Cc---eEEEECCCCEEEEEEc
Confidence 45677666543 2 234699999998888887765 11 1268999999999985
No 87
>PF03173 CHB_HEX: Putative carbohydrate binding domain; InterPro: IPR004866 This domain represents the N-terminal domain in chitobiases and beta-hexosaminidases 3.2.1.52 from EC. Chitobiases degrade chitin, which forms the exoskeleton in insects and crustaceans, and which is one of the most abundant polysaccharides on earth []. Beta-hexosaminidases are composed of either a HexA/HexB heterodimer or a HexB homodimer, and can hydrolyse diverse substrates, including GM(2)-gangliosides; mutations in this enzyme are associated with Tay-Sachs disease []. HexB is structurally similar to chitobiase, consisting of a beta sandwich structure; this structure is similar to that found in the cellulose-binding domain of cellulase from Cellulomonas fimi (IPR001919 from INTERPRO), suggesting that it may function as a carbohydrate-binding domain.; GO: 0030246 carbohydrate binding; PDB: 1C7T_A 1QBA_A 1QBB_A 1C7S_A.
Probab=57.19 E-value=12 Score=30.90 Aligned_cols=35 Identities=20% Similarity=0.246 Sum_probs=27.0
Q ss_pred EEEEEeCCCCcEEEeCCeee--eCCCCeEEEEEEecc
Q 027214 42 AFKVKTTSPKKYFVRPNTGV--VQPWDSCIIRVTLQA 76 (226)
Q Consensus 42 aFKVKTT~p~~Y~VrP~~G~--I~P~~s~~I~V~l~~ 76 (226)
.|+|.-=+-+.|++.|.-|+ |.||+++.|.+.-..
T Consensus 68 ~f~i~hinGDl~kl~Pt~~F~gl~~Ges~~I~~~~~~ 104 (164)
T PF03173_consen 68 QFKITHINGDLHKLTPTAGFKGLAPGESLEIPFVGEY 104 (164)
T ss_dssp TEEEEE-STTEEEEEE-TT---B-TTEEEEEEEEEES
T ss_pred CeEEEEEcCeEEEEeECCCCCccCCCCEEEEEEEccc
Confidence 38888888999999999998 899999999998543
No 88
>PRK14127 cell division protein GpsB; Provisional
Probab=56.20 E-value=32 Score=26.47 Aligned_cols=30 Identities=13% Similarity=0.257 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027214 155 ALQRLKDERDAAVRQTQLLQQDLDMLKRRG 184 (226)
Q Consensus 155 ~i~~L~eE~~~~~~en~~L~~el~~lr~~~ 184 (226)
.+..+.+|+..|++++..|++++..++.+.
T Consensus 38 dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~ 67 (109)
T PRK14127 38 DYEAFQKEIEELQQENARLKAQVDELTKQV 67 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345666777777777777777777766543
No 89
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=55.99 E-value=29 Score=33.19 Aligned_cols=24 Identities=17% Similarity=0.207 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 027214 158 RLKDERDAAVRQTQLLQQDLDMLK 181 (226)
Q Consensus 158 ~L~eE~~~~~~en~~L~~el~~lr 181 (226)
+|+.+..++..+|+.|-++|..|.
T Consensus 290 eL~kkV~~Le~~N~sLl~qL~klQ 313 (472)
T KOG0709|consen 290 ELQKKVEELELSNRSLLAQLKKLQ 313 (472)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHH
Confidence 344444444444555555544444
No 90
>PF00553 CBM_2: Cellulose binding domain; InterPro: IPR001919 The microbial degradation of cellulose and xylans requires several types of enzyme such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) []. Structurally, cellulases and xylanases generally consist of a catalytic domain joined to a cellulose-binding domain (CBD) by a short linker sequence rich in proline and/or hydroxy-amino acids. The CBD domain is found either at the N-terminal or at the C-terminal extremity of these enzymes. As it is shown in the following schematic representation, there are two conserved cysteines in this CBD domain - one at each extremity of the domain - which have been shown [] to be involved in a disulphide bond. There are also four conserved tryptophan, two are involved in cellulose binding. The CBD of a number of bacterial cellulases has been shown to consist of about 105 amino acid residues [, ]. +-------------------------------------------------+ | | xCxxxxWxxxxxNxxxWxxxxxxxWxxxxxxxxWNxxxxxGxxxxxxxxxxCx 'C': conserved cysteine involved in a disulphide bond. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process; PDB: 2CZN_A 2CWR_A 1HEH_C 1HEJ_C 3NDZ_E 3NDY_E 2XBD_A 1E5C_A 1XBD_A 1E5B_A ....
Probab=55.90 E-value=34 Score=25.35 Aligned_cols=52 Identities=17% Similarity=0.141 Sum_probs=34.1
Q ss_pred ceeEeEEEEEcCCCCeEE-EEEEeCC-----------------CCcEEEeCCe--eeeCCCCeEEEEEEecc
Q 027214 25 KQGFCDLKVINNTEHHVA-FKVKTTS-----------------PKKYFVRPNT--GVVQPWDSCIIRVTLQA 76 (226)
Q Consensus 25 ~~~~~~l~L~N~s~~~va-FKVKTT~-----------------p~~Y~VrP~~--G~I~P~~s~~I~V~l~~ 76 (226)
..-...|+|+|.++.++. ++|.=+- -..|.|+|.. +.|+||+++.+-+....
T Consensus 13 ~Gf~~~v~v~N~~~~~i~~W~v~~~~~~~~~i~~~Wna~~s~~g~~~~v~~~~wn~~i~~G~s~~~Gf~~~~ 84 (101)
T PF00553_consen 13 GGFQGEVTVTNNGSSPINGWTVTFTFPSGQTITSSWNATVSQSGNTVTVTNPSWNGTIAPGGSVTFGFQASG 84 (101)
T ss_dssp SEEEEEEEEEESSSSTEESEEEEEEESTTEEEEEEESCEEEEETTEEEEEESSTCSEEEESEEEEEEEEEEE
T ss_pred CCeEEEEEEEECCCCccCCEEEEEEeCCCCEEeeeeccEEEecCCEEEEEcCCcCcccCCCCeEEEEEEEeC
Confidence 345567888888776652 4433222 2578888764 69999999877666544
No 91
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=55.46 E-value=15 Score=24.95 Aligned_cols=25 Identities=20% Similarity=0.377 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 027214 157 QRLKDERDAAVRQTQLLQQDLDMLK 181 (226)
Q Consensus 157 ~~L~eE~~~~~~en~~L~~el~~lr 181 (226)
-+++.+..+++++++++++|++.+|
T Consensus 44 ~~~r~~~~~~~k~l~~le~e~~~lr 68 (68)
T PF06305_consen 44 LRLRRRIRRLRKELKKLEKELEQLR 68 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3666677777777777777776654
No 92
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=55.14 E-value=88 Score=27.14 Aligned_cols=26 Identities=19% Similarity=0.300 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027214 158 RLKDERDAAVRQTQLLQQDLDMLKRR 183 (226)
Q Consensus 158 ~L~eE~~~~~~en~~L~~el~~lr~~ 183 (226)
+++.|+.+.+.|+++++.++..|..+
T Consensus 166 ~ie~~L~~v~~eIe~~~~~~~~l~~~ 191 (262)
T PF14257_consen 166 EIERELSRVRSEIEQLEGQLKYLDDR 191 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44445555555555555555555544
No 93
>PRK14750 kdpF potassium-transporting ATPase subunit F; Provisional
Probab=54.98 E-value=26 Score=20.54 Aligned_cols=24 Identities=13% Similarity=0.271 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccC
Q 027214 194 LMFAAFVGLIGIMVGLILNLLLSS 217 (226)
Q Consensus 194 ~~~v~lv~lla~~lG~~l~~~~~~ 217 (226)
+..+.-+.++.+++||+.-.||..
T Consensus 3 ~~vi~g~llv~lLl~YLvYAL~na 26 (29)
T PRK14750 3 FSIVCGALLVLLLLGYLVYALFNA 26 (29)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCc
Confidence 345666778888999999888753
No 94
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=54.42 E-value=35 Score=24.26 Aligned_cols=27 Identities=19% Similarity=0.336 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027214 155 ALQRLKDERDAAVRQTQLLQQDLDMLK 181 (226)
Q Consensus 155 ~i~~L~eE~~~~~~en~~L~~el~~lr 181 (226)
.+.+|+++...+.++|..|++|-..|+
T Consensus 26 e~eeLke~n~~L~~e~~~L~~en~~L~ 52 (72)
T PF06005_consen 26 ENEELKEKNNELKEENEELKEENEQLK 52 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 345556655555444444444444444
No 95
>COG4499 Predicted membrane protein [Function unknown]
Probab=54.31 E-value=21 Score=33.47 Aligned_cols=57 Identities=9% Similarity=0.141 Sum_probs=31.5
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHhccccCCCCch-HHHHHHHHHHHHHHHHHHhhhccCC
Q 027214 157 QRLKDERDA-AVRQTQLLQQDLDMLKRRGQRKGVRGFS-LMFAAFVGLIGIMVGLILNLLLSSP 218 (226)
Q Consensus 157 ~~L~eE~~~-~~~en~~L~~el~~lr~~~~~~~~~g~s-~~~v~lv~lla~~lG~~l~~~~~~~ 218 (226)
..|.|=++. +++|+++..+.+.-.++.. -++. ++-+=+++++.++|+|+.-.+||--
T Consensus 188 d~l~e~i~e~~~kE~e~~~kn~a~VpK~k-----~~ifk~~giGliillvl~li~~~Y~~f~~~ 246 (434)
T COG4499 188 DDLAEFIDEEYQKETEKINKNYAFVPKKK-----YTIFKYFGIGLIILLVLLLIYFTYYYFSNQ 246 (434)
T ss_pred HHHHHHHHHHHHHHHHHHhcceeeccccc-----ceehhhHHHhHHHHHHHHHHHHHHHHHHcC
Confidence 444444444 5555655555554444332 1222 2223366777778888888888743
No 96
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=54.14 E-value=34 Score=24.38 Aligned_cols=27 Identities=19% Similarity=0.225 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027214 152 ANSALQRLKDERDAAVRQTQLLQQDLD 178 (226)
Q Consensus 152 ~~~~i~~L~eE~~~~~~en~~L~~el~ 178 (226)
|...|.-|+=|+..+++.|+.|.+|..
T Consensus 16 AvdTI~LLQmEieELKEknn~l~~e~q 42 (79)
T COG3074 16 AIDTITLLQMEIEELKEKNNSLSQEVQ 42 (79)
T ss_pred HHHHHHHHHHHHHHHHHHhhHhHHHHH
Confidence 445555666666666666666655544
No 97
>PF06612 DUF1146: Protein of unknown function (DUF1146); InterPro: IPR009526 Members of this protein family are small, typically about 80 residues in length, and are highly hydrophobic. The gene is found so far only in a subset of the firmicutes in association with genes of the ATP synthase F1 complex or NADH-quinone oxidoreductase. This family includes YwzB from Bacillus subtilis.
Probab=53.47 E-value=15 Score=24.03 Aligned_cols=20 Identities=15% Similarity=0.281 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 027214 194 LMFAAFVGLIGIMVGLILNL 213 (226)
Q Consensus 194 ~~~v~lv~lla~~lG~~l~~ 213 (226)
...-++..++|+.|||....
T Consensus 26 ~q~~ll~vllsIalGylvs~ 45 (48)
T PF06612_consen 26 RQARLLIVLLSIALGYLVSS 45 (48)
T ss_pred hHHHHHHHHHHHHHHHHHHh
Confidence 34557788899999998764
No 98
>PRK02898 cobalt transport protein CbiN; Provisional
Probab=52.99 E-value=6.8 Score=29.75 Aligned_cols=24 Identities=33% Similarity=0.319 Sum_probs=20.0
Q ss_pred CchHHHHHHHHHHHHHHHHHHhhh
Q 027214 191 GFSLMFAAFVGLIGIMVGLILNLL 214 (226)
Q Consensus 191 g~s~~~v~lv~lla~~lG~~l~~~ 214 (226)
-=|++|++=.+|=|.+|||++|..
T Consensus 66 iESLLFaLQAAiGAgiIgY~lG~~ 89 (100)
T PRK02898 66 IESLLFALQAALGAGIIGYILGYY 89 (100)
T ss_pred HHHHHHHHHHHHhhhhhheeeeeh
Confidence 346889999999999999998864
No 99
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=52.47 E-value=44 Score=22.59 Aligned_cols=32 Identities=16% Similarity=0.370 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027214 152 ANSALQRLKDERDAAVRQTQLLQQDLDMLKRR 183 (226)
Q Consensus 152 ~~~~i~~L~eE~~~~~~en~~L~~el~~lr~~ 183 (226)
....+..|..+...|..++..|+++...|+..
T Consensus 31 Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e 62 (64)
T PF00170_consen 31 LEEKVEELESENEELKKELEQLKKEIQSLKSE 62 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34456778888888888888888888777654
No 100
>PF00672 HAMP: HAMP domain; InterPro: IPR003660 The HAMP linker domain (present in Histidine kinases, Adenyl cyclases, Methyl-accepting proteins and Phosphatases) is an approximately 50-amino acid alpha-helical region. It is found in bacterial sensor and chemotaxis proteins and in eukaryotic histidine kinases. The bacterial proteins are usually integral membrane proteins and part of a two-component signal transduction pathway. One or several copies of the HAMP domain can be found in association with other domains, such as the histidine kinase domain, the bacterial chemotaxis sensory transducer domain, the PAS repeat, the EAL domain, the GGDEF domain, the protein phosphatase 2C-like domain, the guanylate cyclase domain, or the response regulatory domain. It has been suggested that the HAMP domain possesses a role of regulating the phosphorylation or methylation of homodimeric receptors by transmitting the conformational changes in periplasmic ligand-binding domains to cytoplasmic signalling kinase and methyl-acceptor domains.; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0016021 integral to membrane; PDB: 3PJX_A 3PJW_A 3ZX6_B 2Y20_B 2Y0Q_D 2Y21_H 3ZRW_C 2L7H_B 2LFS_B 2L7I_B ....
Probab=52.43 E-value=22 Score=23.67 Aligned_cols=24 Identities=13% Similarity=0.390 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCC
Q 027214 195 MFAAFVGLIGIMVGLILNLLLSSP 218 (226)
Q Consensus 195 ~~v~lv~lla~~lG~~l~~~~~~~ 218 (226)
..++++++++++++|++.--+..|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~i~~p 26 (70)
T PF00672_consen 3 VLFLIILLLSLLLAWLLARRITRP 26 (70)
T ss_dssp HHHHHHHHHHHHHHHH--HTTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777888888888887777665
No 101
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=51.73 E-value=31 Score=25.92 Aligned_cols=29 Identities=7% Similarity=0.213 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027214 154 SALQRLKDERDAAVRQTQLLQQDLDMLKR 182 (226)
Q Consensus 154 ~~i~~L~eE~~~~~~en~~L~~el~~lr~ 182 (226)
..+..|.+.++.+..+|..|.+++..+|+
T Consensus 80 ~~~~~L~~~l~~l~~eN~~L~~~i~~~r~ 108 (109)
T PF03980_consen 80 KEREQLNARLQELEEENEALAEEIQEQRK 108 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 35678999999999999999999988774
No 102
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=51.67 E-value=28 Score=33.43 Aligned_cols=31 Identities=13% Similarity=0.345 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027214 154 SALQRLKDERDAAVRQTQLLQQDLDMLKRRG 184 (226)
Q Consensus 154 ~~i~~L~eE~~~~~~en~~L~~el~~lr~~~ 184 (226)
..++.++.++..+.+||++|++|-++||++.
T Consensus 66 a~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~ 96 (472)
T TIGR03752 66 AEVKELRKRLAKLISENEALKAENERLQKRE 96 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3456777888888888888888888887653
No 103
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=51.48 E-value=41 Score=23.06 Aligned_cols=32 Identities=16% Similarity=0.317 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 027214 154 SALQRLKDERDAAVRQTQLLQQDLDMLKRRGQ 185 (226)
Q Consensus 154 ~~i~~L~eE~~~~~~en~~L~~el~~lr~~~~ 185 (226)
.++.-|++.+..+..+|.+|+.|=..||+...
T Consensus 14 EEVevLK~~I~eL~~~n~~Le~EN~~Lk~~~~ 45 (59)
T PF01166_consen 14 EEVEVLKEQIAELEERNSQLEEENNLLKQNAS 45 (59)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 35667888888888888888888888887654
No 104
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=51.05 E-value=32 Score=23.55 Aligned_cols=26 Identities=15% Similarity=0.299 Sum_probs=22.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027214 151 DANSALQRLKDERDAAVRQTQLLQQD 176 (226)
Q Consensus 151 e~~~~i~~L~eE~~~~~~en~~L~~e 176 (226)
..+..|.+|.+..+.+..||.-|++-
T Consensus 18 vLK~~I~eL~~~n~~Le~EN~~Lk~~ 43 (59)
T PF01166_consen 18 VLKEQIAELEERNSQLEEENNLLKQN 43 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 35778999999999999999999874
No 105
>PF03907 Spo7: Spo7-like protein; InterPro: IPR005605 Saccharomyces cerevisiae (Baker's yeast) Spo7 P18410 from SWISSPROT is an integral nuclear/ER membrane protein of unknown function, required for normal nuclear envelope morphology and sporulation [].
Probab=50.82 E-value=38 Score=29.02 Aligned_cols=26 Identities=15% Similarity=0.442 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHhhhccCCCCC
Q 027214 196 FAAFVGLIGIMVGLILNLLLSSPPPT 221 (226)
Q Consensus 196 ~v~lv~lla~~lG~~l~~~~~~~~~~ 221 (226)
+.++.++++.++||++..+|=+|+..
T Consensus 31 yt~FL~~L~~~i~~~~y~lf~~~~~~ 56 (207)
T PF03907_consen 31 YTFFLSLLCLWIAFFFYALFFRPRED 56 (207)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCChhh
Confidence 44455556666677777777776543
No 106
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=50.81 E-value=31 Score=26.47 Aligned_cols=27 Identities=11% Similarity=0.027 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027214 157 QRLKDERDAAVRQTQLLQQDLDMLKRR 183 (226)
Q Consensus 157 ~~L~eE~~~~~~en~~L~~el~~lr~~ 183 (226)
..+.+|+.+|.+++.+|+.|.+.|++.
T Consensus 74 ~~~~~ei~~L~~el~~L~~E~diLKKa 100 (121)
T PRK09413 74 AAAMKQIKELQRLLGKKTMENELLKEA 100 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666666667777777666666654
No 107
>PRK14127 cell division protein GpsB; Provisional
Probab=50.72 E-value=45 Score=25.67 Aligned_cols=34 Identities=21% Similarity=0.241 Sum_probs=22.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027214 151 DANSALQRLKDERDAAVRQTQLLQQDLDMLKRRG 184 (226)
Q Consensus 151 e~~~~i~~L~eE~~~~~~en~~L~~el~~lr~~~ 184 (226)
|....+..+.++...+.+||..|++++.+|+.+.
T Consensus 27 EVD~FLd~V~~dye~l~~e~~~Lk~e~~~l~~~l 60 (109)
T PRK14127 27 EVDKFLDDVIKDYEAFQKEIEELQQENARLKAQV 60 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666677777777777776666553
No 108
>TIGR03142 cytochro_ccmI cytochrome c-type biogenesis protein CcmI. This TPR repeat-containing protein is the CcmI protein (also called CycH) of c-type cytochrome biogenesis. CcmI is thought to act as an apo-cytochrome c chaperone. This model describes the N-terminal region of the protein, Members of this protein family
Probab=50.49 E-value=1e+02 Score=23.57 Aligned_cols=24 Identities=13% Similarity=0.241 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHH---HHHHHHHHHHHH
Q 027214 155 ALQRLKDERDAA---VRQTQLLQQDLD 178 (226)
Q Consensus 155 ~i~~L~eE~~~~---~~en~~L~~el~ 178 (226)
.+.+|.+|..+- .+|-+++++|++
T Consensus 44 qL~ELe~d~~~G~l~~~e~~~~~~El~ 70 (117)
T TIGR03142 44 RLAELERDLAEGLLDEAEAEAARAELQ 70 (117)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 455666665541 245566777764
No 109
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=50.37 E-value=72 Score=22.96 Aligned_cols=18 Identities=28% Similarity=0.388 Sum_probs=9.9
Q ss_pred EeEEEEEcCCCCeEEEEE
Q 027214 28 FCDLKVINNTEHHVAFKV 45 (226)
Q Consensus 28 ~~~l~L~N~s~~~vaFKV 45 (226)
.-.|+|+|+++++|-+..
T Consensus 3 ~~~l~v~N~s~~~v~l~f 20 (82)
T PF12690_consen 3 EFTLTVTNNSDEPVTLQF 20 (82)
T ss_dssp EEEEEEEE-SSS-EEEEE
T ss_pred EEEEEEEeCCCCeEEEEe
Confidence 345666776666666655
No 110
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=50.07 E-value=85 Score=25.76 Aligned_cols=18 Identities=6% Similarity=0.421 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 027214 194 LMFAAFVGLIGIMVGLIL 211 (226)
Q Consensus 194 ~~~v~lv~lla~~lG~~l 211 (226)
+++-++++++|+++||+-
T Consensus 157 ~~~g~i~~~~a~~la~~r 174 (177)
T PF07798_consen 157 WLVGVIFGCVALVLAILR 174 (177)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334466777788888763
No 111
>smart00338 BRLZ basic region leucin zipper.
Probab=49.68 E-value=57 Score=22.05 Aligned_cols=32 Identities=19% Similarity=0.395 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027214 152 ANSALQRLKDERDAAVRQTQLLQQDLDMLKRR 183 (226)
Q Consensus 152 ~~~~i~~L~eE~~~~~~en~~L~~el~~lr~~ 183 (226)
....+..|..+...|..++..|+.|...|+..
T Consensus 31 Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~ 62 (65)
T smart00338 31 LERKVEQLEAENERLKKEIERLRRELEKLKSE 62 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566788888888888888888888777754
No 112
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=49.10 E-value=32 Score=27.40 Aligned_cols=26 Identities=23% Similarity=0.395 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027214 158 RLKDERDAAVRQTQLLQQDLDMLKRR 183 (226)
Q Consensus 158 ~L~eE~~~~~~en~~L~~el~~lr~~ 183 (226)
.|..+++.+.+|..+|++|..++++.
T Consensus 78 eLE~~k~~L~qqv~~L~~e~s~~~~E 103 (135)
T KOG4196|consen 78 ELEKEKAELQQQVEKLKEENSRLRRE 103 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566666666666666666666554
No 113
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=48.86 E-value=47 Score=24.15 Aligned_cols=28 Identities=18% Similarity=0.228 Sum_probs=15.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027214 151 DANSALQRLKDERDAAVRQTQLLQQDLD 178 (226)
Q Consensus 151 e~~~~i~~L~eE~~~~~~en~~L~~el~ 178 (226)
.|..+|.-|+=|+..++++|..|.+|.+
T Consensus 15 qAvdtI~LLqmEieELKekn~~L~~e~~ 42 (79)
T PRK15422 15 QAIDTITLLQMEIEELKEKNNSLSQEVQ 42 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555543
No 114
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=48.82 E-value=75 Score=23.13 Aligned_cols=20 Identities=35% Similarity=0.278 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHhhhcc
Q 027214 197 AAFVGLIGIMVGLILNLLLS 216 (226)
Q Consensus 197 v~lv~lla~~lG~~l~~~~~ 216 (226)
-+-.+.+|+.+|+++|+|++
T Consensus 73 P~~svgiAagvG~llG~Ll~ 92 (94)
T PF05957_consen 73 PWQSVGIAAGVGFLLGLLLR 92 (94)
T ss_pred hHHHHHHHHHHHHHHHHHHh
Confidence 47778888899999999985
No 115
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=48.56 E-value=46 Score=24.65 Aligned_cols=29 Identities=24% Similarity=0.430 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027214 155 ALQRLKDERDAAVRQTQLLQQDLDMLKRR 183 (226)
Q Consensus 155 ~i~~L~eE~~~~~~en~~L~~el~~lr~~ 183 (226)
.+.+|..++..+.+||.+|+.+++..|..
T Consensus 50 ~v~~L~~e~~~l~~E~e~L~~~l~~e~~E 78 (87)
T PF12709_consen 50 KVDELENENKALKRENEQLKKKLDTEREE 78 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666677777777777777776655543
No 116
>PF06645 SPC12: Microsomal signal peptidase 12 kDa subunit (SPC12); InterPro: IPR009542 This family consists of several microsomal signal peptidase 12 kDa subunit proteins. Translocation of polypeptide chains across the endoplasmic reticulum (ER) membrane is triggered by signal sequences. Subsequently, signal recognition particle interacts with its membrane receptor and the ribosome-bound nascent chain is targeted to the ER where it is transferred into a protein-conducting channel. At some point, a second signal sequence recognition event takes place in the membrane and translocation of the nascent chain through the membrane occurs. The signal sequence of most secretory and membrane proteins is cleaved off at this stage. Cleavage occurs by the signal peptidase complex (SPC) as soon as the lumenal domain of the translocating polypeptide is large enough to expose its cleavage site to the enzyme. The signal peptidase complex is possibly also involved in proteolytic events in the ER membrane other than the processing of the signal sequence, for example the further digestion of the cleaved signal peptide or the degradation of membrane proteins. Mammalian signal peptidase is as a complex of five different polypeptide chains. This family represents the 12 kDa subunit (SPC12).; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=48.33 E-value=23 Score=25.36 Aligned_cols=20 Identities=20% Similarity=0.389 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q 027214 195 MFAAFVGLIGIMVGLILNLL 214 (226)
Q Consensus 195 ~~v~lv~lla~~lG~~l~~~ 214 (226)
..+++.+++|+++||+.+-+
T Consensus 15 ~il~~~~iisfi~Gy~~q~~ 34 (76)
T PF06645_consen 15 YILIISAIISFIVGYITQSF 34 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34567788888888887643
No 117
>smart00637 CBD_II CBD_II domain.
Probab=48.19 E-value=98 Score=22.21 Aligned_cols=24 Identities=13% Similarity=0.081 Sum_probs=18.1
Q ss_pred CcEEEeCCe--eeeCCCCeEEEEEEe
Q 027214 51 KKYFVRPNT--GVVQPWDSCIIRVTL 74 (226)
Q Consensus 51 ~~Y~VrP~~--G~I~P~~s~~I~V~l 74 (226)
..|.++|.. +.|.||+++.+-+..
T Consensus 50 ~~~~~~~~~wn~~i~~G~s~~~gf~~ 75 (92)
T smart00637 50 GHVTATNASWNGTIAPGGSVSFGFQG 75 (92)
T ss_pred CEEEEecCccccccCCCCEEEEEEEe
Confidence 368888644 799999988776655
No 118
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=47.97 E-value=42 Score=22.45 Aligned_cols=24 Identities=17% Similarity=0.326 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 027214 159 LKDERDAAVRQTQLLQQDLDMLKR 182 (226)
Q Consensus 159 L~eE~~~~~~en~~L~~el~~lr~ 182 (226)
...++..+..||..|+.++..+|.
T Consensus 27 a~~rl~~l~~EN~~Lr~eL~~~r~ 50 (52)
T PF12808_consen 27 ARKRLSKLEGENRLLRAELERLRS 50 (52)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445666777778888888777653
No 119
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=47.30 E-value=43 Score=22.95 Aligned_cols=26 Identities=12% Similarity=0.328 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027214 159 LKDERDAAVRQTQLLQQDLDMLKRRG 184 (226)
Q Consensus 159 L~eE~~~~~~en~~L~~el~~lr~~~ 184 (226)
+.+|+.++..+..+++.++..+.++.
T Consensus 2 ~~~E~~rL~Kel~kl~~~i~~~~~kL 27 (66)
T PF10458_consen 2 VEAEIERLEKELEKLEKEIERLEKKL 27 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777777777776654
No 120
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=47.07 E-value=47 Score=21.78 Aligned_cols=23 Identities=17% Similarity=0.391 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 027214 154 SALQRLKDERDAAVRQTQLLQQD 176 (226)
Q Consensus 154 ~~i~~L~eE~~~~~~en~~L~~e 176 (226)
..+..|.++...|.+++..|++|
T Consensus 32 ~~~~~L~~en~~L~~~i~~L~~E 54 (54)
T PF07716_consen 32 QEVQELEEENEQLRQEIAQLERE 54 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc
Confidence 34445555555555555555443
No 121
>PF06716 DUF1201: Protein of unknown function (DUF1201); InterPro: IPR009591 This entry consists of several Beet yellows virus (BYV) putative membrane-binding proteins of around 54 residues in length. The function of this currently unknown.
Probab=46.53 E-value=25 Score=23.04 Aligned_cols=26 Identities=12% Similarity=0.343 Sum_probs=18.5
Q ss_pred CchHHHHHHHHHHHHHHHHHHhhhcc
Q 027214 191 GFSLMFAAFVGLIGIMVGLILNLLLS 216 (226)
Q Consensus 191 g~s~~~v~lv~lla~~lG~~l~~~~~ 216 (226)
||-++..++++.++.++.++.++++-
T Consensus 12 ~F~~lIC~Fl~~~~~F~~F~~Kqilf 37 (54)
T PF06716_consen 12 AFGFLICLFLFCLVVFIWFVYKQILF 37 (54)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666777788888888887763
No 122
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=46.52 E-value=42 Score=29.72 Aligned_cols=29 Identities=28% Similarity=0.432 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027214 155 ALQRLKDERDAAVRQTQLLQQDLDMLKRR 183 (226)
Q Consensus 155 ~i~~L~eE~~~~~~en~~L~~el~~lr~~ 183 (226)
-+..|..|.+.++.++.+|++|+..+|+.
T Consensus 223 r~~~leken~~lr~~v~~l~~el~~~~~~ 251 (269)
T KOG3119|consen 223 RVAELEKENEALRTQVEQLKKELATLRRL 251 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677778888888888888888877764
No 123
>PF09608 Alph_Pro_TM: Putative transmembrane protein (Alph_Pro_TM); InterPro: IPR019088 This entry consists of predicted transmembrane proteins of about 270 amino acids. They are found predominantly, though not exclusively, in alphaproteobacteria, generally only once in each genome.
Probab=45.51 E-value=21 Score=31.15 Aligned_cols=25 Identities=20% Similarity=0.452 Sum_probs=22.5
Q ss_pred chHHHHHHHHHHHHHHHHHHhhhcc
Q 027214 192 FSLMFAAFVGLIGIMVGLILNLLLS 216 (226)
Q Consensus 192 ~s~~~v~lv~lla~~lG~~l~~~~~ 216 (226)
.++++-++..++|++.||+.+.+|.
T Consensus 210 ~~~lYGl~av~iAi~~Gw~a~~iFr 234 (236)
T PF09608_consen 210 QPLLYGLLAVLIAIFAGWLASAIFR 234 (236)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHcc
Confidence 4588899999999999999999986
No 124
>PF06072 Herpes_US9: Alphaherpesvirus tegument protein US9; InterPro: IPR009278 This family consists of several US9 and related proteins from the Alphaherpesviruses. The function of the US9 protein is unknown although in Bovine herpesvirus 5 Us9 is essential for the anterograde spread of the virus from the olfactory mucosa to the bulb [].; GO: 0019033 viral tegument
Probab=44.95 E-value=30 Score=23.81 Aligned_cols=18 Identities=6% Similarity=0.062 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 027214 196 FAAFVGLIGIMVGLILNL 213 (226)
Q Consensus 196 ~v~lv~lla~~lG~~l~~ 213 (226)
.+++++++|.++|+|+-.
T Consensus 41 ~~~~~c~~S~~lG~~~~~ 58 (60)
T PF06072_consen 41 AVVALCVLSGGLGALVAW 58 (60)
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 345778888888888754
No 125
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=44.50 E-value=33 Score=31.61 Aligned_cols=25 Identities=16% Similarity=0.254 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 027214 157 QRLKDERDAAVRQTQLLQQDLDMLK 181 (226)
Q Consensus 157 ~~L~eE~~~~~~en~~L~~el~~lr 181 (226)
.-|++|..+|++||+.|+.|+.+|.
T Consensus 35 ~aLr~EN~~LKkEN~~Lk~eVerLE 59 (420)
T PF07407_consen 35 FALRMENHSLKKENNDLKIEVERLE 59 (420)
T ss_pred hhHHHHhHHHHHHHHHHHHHHHHHH
Confidence 4667777777777777777766654
No 126
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=44.48 E-value=64 Score=25.73 Aligned_cols=27 Identities=19% Similarity=0.368 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027214 157 QRLKDERDAAVRQTQLLQQDLDMLKRR 183 (226)
Q Consensus 157 ~~L~eE~~~~~~en~~L~~el~~lr~~ 183 (226)
..|..|+.++.+||.+++.|++.++.+
T Consensus 84 ~~L~qqv~~L~~e~s~~~~E~da~k~k 110 (135)
T KOG4196|consen 84 AELQQQVEKLKEENSRLRRELDAYKSK 110 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777777888888888888777644
No 127
>PF05781 MRVI1: MRVI1 protein; InterPro: IPR008677 This family consists of mammalian MRVI1 proteins which are related to the lymphoid-restricted membrane protein (JAW1) and the IP3 receptor associated cGMP kinase substrates A and B (IRAGA and IRAGB). The function of MRVI1 is unknown although mutations in the Mrvi1 gene induces myeloid leukaemia by altering the expression of a gene important for myeloid cell growth and/or differentiation so it has been speculated that Mrvi1 is a tumour suppressor gene []. IRAG is very similar in sequence to MRVI1 and is an essential NO/cGKI-dependent regulator of IP3-induced calcium release. Activation of cGKI decreases IP3-stimulated elevations in intracellular calcium, induces smooth muscle relaxation and contributes to the antiproliferative and pro-apoptotic effects of NO/cGMP []. Jaw1 is a member of a class of proteins with COOH-terminal hydrophobic membrane anchors and is structurally similar to proteins involved in vesicle targeting and fusion. This suggests that the function and/or the structure of the ER in lymphocytes may be modified by lymphoid-restricted resident ER proteins [].
Probab=43.99 E-value=24 Score=34.43 Aligned_cols=31 Identities=10% Similarity=0.215 Sum_probs=25.1
Q ss_pred chHHHHHHHHHHHHHHHHHHhhhccCCCCCC
Q 027214 192 FSLMFAAFVGLIGIMVGLILNLLLSSPPPTV 222 (226)
Q Consensus 192 ~s~~~v~lv~lla~~lG~~l~~~~~~~~~~~ 222 (226)
.-++.+++++|+|+|+++|-++.|.+|.-..
T Consensus 479 ~LWIsvAliVLLAaLlSfLtg~~fq~~vdaA 509 (538)
T PF05781_consen 479 VLWISVALIVLLAALLSFLTGLFFQRCVDAA 509 (538)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccchhccC
Confidence 4567778889999999999999998875433
No 128
>PRK14748 kdpF potassium-transporting ATPase subunit F; Provisional
Probab=43.92 E-value=43 Score=19.62 Aligned_cols=22 Identities=18% Similarity=0.241 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhcc
Q 027214 195 MFAAFVGLIGIMVGLILNLLLS 216 (226)
Q Consensus 195 ~~v~lv~lla~~lG~~l~~~~~ 216 (226)
-.+.-+.++.+++||+.-.|+.
T Consensus 4 ~vi~G~ilv~lLlgYLvyALi~ 25 (29)
T PRK14748 4 GVITGVLLVFLLLGYLVYALIN 25 (29)
T ss_pred HHHHHHHHHHHHHHHHHHHHhC
Confidence 3455666777889999888874
No 129
>PRK04081 hypothetical protein; Provisional
Probab=43.34 E-value=27 Score=29.78 Aligned_cols=25 Identities=16% Similarity=0.250 Sum_probs=20.3
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHh
Q 027214 188 GVRGFSLMFAAFVGLIGIMVGLILN 212 (226)
Q Consensus 188 ~~~g~s~~~v~lv~lla~~lG~~l~ 212 (226)
+.+|..|.-+||...+|-+||-.++
T Consensus 117 ss~G~gLg~~lLasaAGaiLGswIG 141 (207)
T PRK04081 117 SSGGMGLGGTILASAAGAILGSWIG 141 (207)
T ss_pred ccccccHHHHHHHHHHHHHHhhhhh
Confidence 4578899999999999888886655
No 130
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=43.27 E-value=46 Score=26.98 Aligned_cols=32 Identities=16% Similarity=0.369 Sum_probs=19.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027214 151 DANSALQRLKDERDAAVRQTQLLQQDLDMLKR 182 (226)
Q Consensus 151 e~~~~i~~L~eE~~~~~~en~~L~~el~~lr~ 182 (226)
++...|..|++++..+..++..|+.|+..|+.
T Consensus 76 ~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~ 107 (169)
T PF07106_consen 76 ELDAEIKELREELAELKKEVKSLEAELASLSS 107 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34445666666666666666666666655543
No 131
>PF09877 DUF2104: Predicted membrane protein (DUF2104); InterPro: IPR019211 This entry is found in various hypothetical archaeal proteins, has no known function.
Probab=43.17 E-value=17 Score=27.48 Aligned_cols=21 Identities=29% Similarity=0.452 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHhhhcc
Q 027214 196 FAAFVGLIGIMVGLILNLLLS 216 (226)
Q Consensus 196 ~v~lv~lla~~lG~~l~~~~~ 216 (226)
+.+++.++++++|-++|+.+|
T Consensus 3 ~~~li~~i~fiiGs~~GL~yS 23 (99)
T PF09877_consen 3 FILLIYIILFIIGSFLGLEYS 23 (99)
T ss_pred chHHHHHHHHHHHHHHHHHHH
Confidence 457788888888888888876
No 132
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=43.02 E-value=83 Score=21.38 Aligned_cols=23 Identities=17% Similarity=0.319 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 027214 158 RLKDERDAAVRQTQLLQQDLDML 180 (226)
Q Consensus 158 ~L~eE~~~~~~en~~L~~el~~l 180 (226)
+|..++..|..+..+|.++...+
T Consensus 7 ~Ls~dVq~L~~kvdqLs~dv~~l 29 (56)
T PF04728_consen 7 QLSSDVQTLNSKVDQLSSDVNAL 29 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444443333
No 133
>COG4640 Predicted membrane protein [Function unknown]
Probab=42.16 E-value=33 Score=32.39 Aligned_cols=29 Identities=24% Similarity=0.181 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCCCCCC
Q 027214 194 LMFAAFVGLIGIMVGLILNLLLSSPPPTV 222 (226)
Q Consensus 194 ~~~v~lv~lla~~lG~~l~~~~~~~~~~~ 222 (226)
++..+++++|-|++-|+++..||||.+.|
T Consensus 54 ~was~a~~lIlii~~~~fgk~fssp~~~v 82 (465)
T COG4640 54 PWASGAFILILIIILFFFGKNFSSPEAQV 82 (465)
T ss_pred hhHHHHHHHHHHHHHHHHhhccCCHHHHH
Confidence 45556777777888899999999998754
No 134
>PHA02414 hypothetical protein
Probab=41.70 E-value=1.5e+02 Score=22.44 Aligned_cols=50 Identities=12% Similarity=0.244 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHHHHHHHHh
Q 027214 163 RDAAVRQTQLLQQDLDMLKRRGQRKGVRGFSLMFAAFVGLIGIMVGLILN 212 (226)
Q Consensus 163 ~~~~~~en~~L~~el~~lr~~~~~~~~~g~s~~~v~lv~lla~~lG~~l~ 212 (226)
.+++.=|+.+|.+....|+...++...+---+.-=+++.+||-++-|.|.
T Consensus 59 qshi~yQi~~Lee~i~aL~~~n~ked~~KkD~vEkVfmivLGAvvtyVFs 108 (111)
T PHA02414 59 QSHIYYQIERLEEKISALAESNKKEDTEKKDTVEKVFMIVLGAVVTYVFS 108 (111)
T ss_pred hhHHHHHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHHHH
Confidence 34556778889998888887665422111122222333444555555543
No 135
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=40.62 E-value=64 Score=24.45 Aligned_cols=27 Identities=22% Similarity=0.191 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027214 157 QRLKDERDAAVRQTQLLQQDLDMLKRR 183 (226)
Q Consensus 157 ~~L~eE~~~~~~en~~L~~el~~lr~~ 183 (226)
.++++++..++++|++|+++-+.|+..
T Consensus 30 ~~l~~q~~~~~~e~~~l~~~n~~L~~e 56 (105)
T PRK00888 30 WRVNDQVAAQQQTNAKLKARNDQLFAE 56 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555554443
No 136
>PHA00094 VI minor coat protein
Probab=40.47 E-value=39 Score=26.11 Aligned_cols=22 Identities=14% Similarity=0.244 Sum_probs=11.0
Q ss_pred CchHHHHHHHHHHHHHHHHHHh
Q 027214 191 GFSLMFAAFVGLIGIMVGLILN 212 (226)
Q Consensus 191 g~s~~~v~lv~lla~~lG~~l~ 212 (226)
|.+.+.-.+.+|+..++|||..
T Consensus 6 GIPaL~rfi~~la~~~~gyfa~ 27 (112)
T PHA00094 6 GIPALARFLGTLAANLIGYFAK 27 (112)
T ss_pred CcHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555544
No 137
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=40.44 E-value=68 Score=26.47 Aligned_cols=29 Identities=24% Similarity=0.548 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027214 155 ALQRLKDERDAAVRQTQLLQQDLDMLKRR 183 (226)
Q Consensus 155 ~i~~L~eE~~~~~~en~~L~~el~~lr~~ 183 (226)
.-++|.+|+..++++|..|+.|+..|.+.
T Consensus 105 e~~~l~~e~~~l~~~~e~Le~e~~~L~~~ 133 (161)
T TIGR02894 105 ENERLKNQNESLQKRNEELEKELEKLRQR 133 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677777777777777777766654
No 138
>PRK15249 fimbrial chaperone protein StbB; Provisional
Probab=40.30 E-value=79 Score=27.67 Aligned_cols=43 Identities=7% Similarity=0.162 Sum_probs=29.8
Q ss_pred EEEEEcCCCCeEEEE-EEeCCCCcEEEeCCeeeeCCCCeEEEEEE
Q 027214 30 DLKVINNTEHHVAFK-VKTTSPKKYFVRPNTGVVQPWDSCIIRVT 73 (226)
Q Consensus 30 ~l~L~N~s~~~vaFK-VKTT~p~~Y~VrP~~G~I~P~~s~~I~V~ 73 (226)
.|+++|+|..++.|. ++....+ -.+....|+|.|+++..+.+-
T Consensus 177 ~l~v~Nptpyyitl~~l~~~~~~-~~~~~~~~mv~P~s~~~~~l~ 220 (253)
T PRK15249 177 GIVIVNPQPWFASLSNLNVKVNG-ASYNLDADMIAPFSSQTWWLP 220 (253)
T ss_pred EEEEECCCceEEEeeeeeeccCC-eecCCCCceECCCCccEEEcc
Confidence 599999999999886 4322222 123234589999999988753
No 139
>PF06030 DUF916: Bacterial protein of unknown function (DUF916); InterPro: IPR010317 This family consists of putative cell surface proteins, from Firmicutes, of unknown function.
Probab=40.29 E-value=74 Score=24.66 Aligned_cols=30 Identities=13% Similarity=0.356 Sum_probs=23.6
Q ss_pred eEEeeecCceeEeEEEEEcCCCCeEEEEEE
Q 027214 17 LKFIFELEKQGFCDLKVINNTEHHVAFKVK 46 (226)
Q Consensus 17 L~F~~~~~~~~~~~l~L~N~s~~~vaFKVK 46 (226)
..+...++...+-.++|+|.+++.+.|+|.
T Consensus 19 FdL~~~P~q~~~l~v~i~N~s~~~~tv~v~ 48 (121)
T PF06030_consen 19 FDLKVKPGQKQTLEVRITNNSDKEITVKVS 48 (121)
T ss_pred EEEEeCCCCEEEEEEEEEeCCCCCEEEEEE
Confidence 344455666778899999999999999985
No 140
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=39.34 E-value=1.2e+02 Score=21.23 Aligned_cols=54 Identities=13% Similarity=0.023 Sum_probs=36.0
Q ss_pred CceeEeEEEEEcCCCC-eEEEEEEeCCCCcEEEeCCeeeeCCCCeEEEEEEeccc
Q 027214 24 EKQGFCDLKVINNTEH-HVAFKVKTTSPKKYFVRPNTGVVQPWDSCIIRVTLQAQ 77 (226)
Q Consensus 24 ~~~~~~~l~L~N~s~~-~vaFKVKTT~p~~Y~VrP~~G~I~P~~s~~I~V~l~~~ 77 (226)
++..+-.++|+|.+.. .=.|+|+-...+...-.-..+-|.||++..+.++..+.
T Consensus 18 g~~~~i~~~V~N~G~~~~~~~~v~~~~~~~~~~~~~i~~L~~g~~~~v~~~~~~~ 72 (101)
T PF07705_consen 18 GEPVTITVTVKNNGTADAENVTVRLYLDGNSVSTVTIPSLAPGESETVTFTWTPP 72 (101)
T ss_dssp TSEEEEEEEEEE-SSS-BEEEEEEEEETTEEEEEEEESEB-TTEEEEEEEEEE-S
T ss_pred CCEEEEEEEEEECCCCCCCCEEEEEEECCceeccEEECCcCCCcEEEEEEEEEeC
Confidence 5577889999999764 34567665444444433444788999999999998874
No 141
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=38.85 E-value=1e+02 Score=21.41 Aligned_cols=32 Identities=28% Similarity=0.417 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 027214 154 SALQRLKDERDAAVRQTQLLQQDLDMLKRRGQ 185 (226)
Q Consensus 154 ~~i~~L~eE~~~~~~en~~L~~el~~lr~~~~ 185 (226)
..|..|.+.+.+..+++.+|+.++..|+.+..
T Consensus 18 ~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~ 49 (69)
T PF04102_consen 18 DTIEELNDVVTEQQRQIDRLQRQLRLLRERLR 49 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677777777777888888888888876654
No 142
>PF11772 EpuA: DNA-directed RNA polymerase subunit beta; InterPro: IPR024596 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. This entry represents the short 60-residue long bacterial family that is the beta subunit of the DNA-directed RNA polymerase, likely to be 2.7.7.6 from EC It is membrane-bound and is referred to by the name EpuA.
Probab=38.84 E-value=18 Score=23.68 Aligned_cols=19 Identities=11% Similarity=0.499 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q 027214 196 FAAFVGLIGIMVGLILNLL 214 (226)
Q Consensus 196 ~v~lv~lla~~lG~~l~~~ 214 (226)
.+++++++++++|.++|..
T Consensus 3 ~V~lL~~~~l~iGlmIGY~ 21 (47)
T PF11772_consen 3 LVLLLAILALAIGLMIGYG 21 (47)
T ss_pred eHHHHHHHHHHHHHHeeee
Confidence 3555566666666666543
No 143
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=38.82 E-value=85 Score=27.33 Aligned_cols=7 Identities=0% Similarity=0.150 Sum_probs=2.8
Q ss_pred HHHHHHH
Q 027214 172 LLQQDLD 178 (226)
Q Consensus 172 ~L~~el~ 178 (226)
++++|.+
T Consensus 124 k~r~e~~ 130 (230)
T PF03904_consen 124 KVREENK 130 (230)
T ss_pred HHHHHHH
Confidence 3344433
No 144
>PRK00295 hypothetical protein; Provisional
Probab=38.68 E-value=90 Score=21.75 Aligned_cols=30 Identities=27% Similarity=0.290 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027214 154 SALQRLKDERDAAVRQTQLLQQDLDMLKRR 183 (226)
Q Consensus 154 ~~i~~L~eE~~~~~~en~~L~~el~~lr~~ 183 (226)
..|..|.+.+.+..+++..|+.++..|+.+
T Consensus 19 ~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~r 48 (68)
T PRK00295 19 DTIQALNDVLVEQQRVIERLQLQMAALIKR 48 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677777777777778888777766544
No 145
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=38.49 E-value=80 Score=21.69 Aligned_cols=28 Identities=18% Similarity=0.261 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027214 156 LQRLKDERDAAVRQTQLLQQDLDMLKRR 183 (226)
Q Consensus 156 i~~L~eE~~~~~~en~~L~~el~~lr~~ 183 (226)
+..+..++..+..++++++++.+.|++.
T Consensus 19 ~~~~~~ei~~l~~~i~~l~~e~~~L~~e 46 (80)
T PF04977_consen 19 YYQLNQEIAELQKEIEELKKENEELKEE 46 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666666666655544
No 146
>PF09489 CbtB: Probable cobalt transporter subunit (CbtB); InterPro: IPR012667 This entry represents a family of proteins which have been proposed to act as cobalt transporters acting in concert with vitamin B12 biosynthesis systems []. Evidence for this assignment includes 1) prediction of a single transmembrane segment and a C-terminal histidine-rich motif likely to be a metal-binding site, 2) positional gene linkage with known B12 biosynthesis genes, 3) upstream proximity of B12 transcriptional regulatory sites, 4) the absence of other known cobalt import systems and 5) the obligate co-localization with a protein (CbtA) predicted to have five additional transmembrane segments.
Probab=38.39 E-value=47 Score=22.38 Aligned_cols=22 Identities=23% Similarity=0.386 Sum_probs=17.7
Q ss_pred hHHHHHHHHHHHHHHHHHHhhh
Q 027214 193 SLMFAAFVGLIGIMVGLILNLL 214 (226)
Q Consensus 193 s~~~v~lv~lla~~lG~~l~~~ 214 (226)
.+..+++.+++|++++|+.++.
T Consensus 12 ~~~~~~~a~~lg~~l~~~~gf~ 33 (54)
T PF09489_consen 12 RLVQAAAAALLGLLLLYFVGFS 33 (54)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 4677888888999999988853
No 147
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=38.27 E-value=81 Score=24.35 Aligned_cols=27 Identities=22% Similarity=0.311 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027214 156 LQRLKDERDAAVRQTQLLQQDLDMLKR 182 (226)
Q Consensus 156 i~~L~eE~~~~~~en~~L~~el~~lr~ 182 (226)
++.|+.-+.++.+||..|+=|.+.||+
T Consensus 24 l~~lK~~l~~lvEEN~~L~lENe~LR~ 50 (114)
T COG4467 24 LGGLKQHLGSLVEENTALRLENEKLRE 50 (114)
T ss_pred HHHHHHHHHHHHHhhHHHHhhHHHHHH
Confidence 334444444444444444444444443
No 148
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=38.26 E-value=63 Score=28.37 Aligned_cols=25 Identities=16% Similarity=0.343 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 027214 157 QRLKDERDAAVRQTQLLQQDLDMLK 181 (226)
Q Consensus 157 ~~L~eE~~~~~~en~~L~~el~~lr 181 (226)
.+|.+|+.+..+++..|++|++.||
T Consensus 96 ~ELE~elr~~~~~~~~L~~Ev~~L~ 120 (248)
T PF08172_consen 96 AELEEELRKQQQTISSLRREVESLR 120 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666666655554
No 149
>PRK04406 hypothetical protein; Provisional
Probab=38.20 E-value=89 Score=22.27 Aligned_cols=30 Identities=10% Similarity=0.155 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027214 155 ALQRLKDERDAAVRQTQLLQQDLDMLKRRG 184 (226)
Q Consensus 155 ~i~~L~eE~~~~~~en~~L~~el~~lr~~~ 184 (226)
.|..|.+.+.+..+++..|+.++..|+.+.
T Consensus 26 tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl 55 (75)
T PRK04406 26 TIEELNDALSQQQLLITKMQDQMKYVVGKV 55 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777777777888888887775543
No 150
>COG5415 Predicted integral membrane metal-binding protein [General function prediction only]
Probab=38.13 E-value=85 Score=27.19 Aligned_cols=58 Identities=16% Similarity=0.068 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--------------cCCCCchHHHHHHHHHHHHHHHHHHh
Q 027214 155 ALQRLKDERDAAVRQTQLLQQDLDMLKRRGQR--------------KGVRGFSLMFAAFVGLIGIMVGLILN 212 (226)
Q Consensus 155 ~i~~L~eE~~~~~~en~~L~~el~~lr~~~~~--------------~~~~g~s~~~v~lv~lla~~lG~~l~ 212 (226)
.+++|++++.++.--..++|..+..++-+-.. .+-.||.-.+++.+.|+|.+--|.++
T Consensus 16 ~L~rle~qi~q~~~~~~~~qs~l~~~~~r~tv~slAl~~l~~S~iy~~~~~y~~~~~It~~llgs~slymfr 87 (251)
T COG5415 16 DLSRLESQIHQLDVALKKSQSILSQWQSRLTVYSLALTVLALSYIYWEYHGYRPYLVITALLLGSGSLYMFR 87 (251)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccccchhHHHHHHHHhhhHHHHHH
Confidence 44555555555555555555555544433110 12356666666666666644334444
No 151
>COG3771 Predicted membrane protein [Function unknown]
Probab=38.10 E-value=38 Score=25.19 Aligned_cols=20 Identities=20% Similarity=0.262 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHhhhc
Q 027214 196 FAAFVGLIGIMVGLILNLLL 215 (226)
Q Consensus 196 ~v~lv~lla~~lG~~l~~~~ 215 (226)
.+..++.+|+++||++-.+|
T Consensus 44 Lla~lF~~G~~lgwli~g~f 63 (97)
T COG3771 44 LLATLFAAGFALGWLICGLF 63 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45677788999999987765
No 152
>PF02687 FtsX: FtsX-like permease family; InterPro: IPR003838 This domain is found in predicted permeases and hypothetical transmembrane proteins. P57382 from SWISSPROT has been shown to transport lipids targeted to the outer membrane across the inner membrane. Both P57382 and O54500 from SWISSPROT have been shown to require ATP. This domain contains three transmembrane helices.; GO: 0016020 membrane
Probab=38.07 E-value=1.1e+02 Score=21.89 Aligned_cols=44 Identities=32% Similarity=0.588 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHhccccCC-CCchHHHHHHHHHHHHHHHHHHhhhc
Q 027214 172 LLQQDLDMLKRRGQRKGV-RGFSLMFAAFVGLIGIMVGLILNLLL 215 (226)
Q Consensus 172 ~L~~el~~lr~~~~~~~~-~g~s~~~v~lv~lla~~lG~~l~~~~ 215 (226)
+-++|...+|.-.-++++ ....+...++++++|+++|++++.++
T Consensus 25 ~~~~~~~il~~lG~s~~~i~~~~~~e~~~~~~~~~~~g~~~~~~~ 69 (121)
T PF02687_consen 25 ERRREIAILRALGASKRQIRKMFLYEALLIALIGILIGILLGILL 69 (121)
T ss_pred HHHHHHHHHHHcCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555566644322111 12234445666666666666655543
No 153
>PF05308 Mito_fiss_reg: Mitochondrial fission regulator; InterPro: IPR007972 This family consists of several uncharacterised eukaryotic proteins of unknown function.
Probab=37.87 E-value=1e+02 Score=27.25 Aligned_cols=23 Identities=22% Similarity=0.166 Sum_probs=13.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 027214 151 DANSALQRLKDERDAAVRQTQLL 173 (226)
Q Consensus 151 e~~~~i~~L~eE~~~~~~en~~L 173 (226)
+|-+-|..|++|+.+|+.|++++
T Consensus 119 ~AlqKIsALEdELs~LRaQIA~I 141 (253)
T PF05308_consen 119 AALQKISALEDELSRLRAQIAKI 141 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566666776666666653
No 154
>PRK02793 phi X174 lysis protein; Provisional
Probab=37.85 E-value=92 Score=21.95 Aligned_cols=29 Identities=17% Similarity=0.261 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027214 155 ALQRLKDERDAAVRQTQLLQQDLDMLKRR 183 (226)
Q Consensus 155 ~i~~L~eE~~~~~~en~~L~~el~~lr~~ 183 (226)
.|..|.+.+.+..+++..|+.++..|+.+
T Consensus 23 tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~r 51 (72)
T PRK02793 23 TIEELNVTVTAHEMEMAKLRDHLRLLTEK 51 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55677777777777788888887777554
No 155
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=37.81 E-value=55 Score=23.48 Aligned_cols=17 Identities=18% Similarity=0.257 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 027214 166 AVRQTQLLQQDLDMLKR 182 (226)
Q Consensus 166 ~~~en~~L~~el~~lr~ 182 (226)
+.++-+.|+++-..+++
T Consensus 36 L~~kt~~L~~~a~~F~k 52 (89)
T PF00957_consen 36 LEDKTEELSDNAKQFKK 52 (89)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHH
Confidence 33444445444444443
No 156
>COG1470 Predicted membrane protein [Function unknown]
Probab=37.72 E-value=3.9e+02 Score=25.97 Aligned_cols=89 Identities=15% Similarity=0.235 Sum_probs=54.4
Q ss_pred CCccEEEecCeeEEeeecCceeEeEEEEEcCCCCeEE-EEEEeCCCCcEE--EeCCe-eeeCCCCeEEEEEEeccccCCC
Q 027214 6 GNQLISVHPEELKFIFELEKQGFCDLKVINNTEHHVA-FKVKTTSPKKYF--VRPNT-GVVQPWDSCIIRVTLQAQRESP 81 (226)
Q Consensus 6 ~~~lL~i~P~eL~F~~~~~~~~~~~l~L~N~s~~~va-FKVKTT~p~~Y~--VrP~~-G~I~P~~s~~I~V~l~~~~~~p 81 (226)
....+.++-.-++-....+......+.|.|.++-++- -|++-..|.-+- |.|+. --|+||++.+|.++... |
T Consensus 378 ~~~~v~l~~g~~~lt~taGee~~i~i~I~NsGna~LtdIkl~v~~PqgWei~Vd~~~I~sL~pge~~tV~ltI~v----P 453 (513)
T COG1470 378 YNELVKLDNGPYRLTITAGEEKTIRISIENSGNAPLTDIKLTVNGPQGWEIEVDESTIPSLEPGESKTVSLTITV----P 453 (513)
T ss_pred cceeEEccCCcEEEEecCCccceEEEEEEecCCCccceeeEEecCCccceEEECcccccccCCCCcceEEEEEEc----C
Confidence 4445555544333334445667788999998874432 344445565554 44553 35789999999999876 4
Q ss_pred CCCCCCCeEEEEEEecC
Q 027214 82 PDMQCKDKFLLQSTIVP 98 (226)
Q Consensus 82 ~~~~~~dKFlVqs~~~~ 98 (226)
++....|++.--.+.++
T Consensus 454 ~~a~aGdY~i~i~~ksD 470 (513)
T COG1470 454 EDAGAGDYRITITAKSD 470 (513)
T ss_pred CCCCCCcEEEEEEEeec
Confidence 45555787765555543
No 157
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=37.40 E-value=95 Score=22.58 Aligned_cols=19 Identities=16% Similarity=0.282 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 027214 163 RDAAVRQTQLLQQDLDMLK 181 (226)
Q Consensus 163 ~~~~~~en~~L~~el~~lr 181 (226)
+..+.++|++|++|...+.
T Consensus 48 r~~L~~en~qLk~E~~~Wq 66 (79)
T PRK15422 48 REELERENNHLKEQQNGWQ 66 (79)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4456667777777765444
No 158
>PF11859 DUF3379: Protein of unknown function (DUF3379); InterPro: IPR021806 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 234 to 251 amino acids in length.
Probab=37.38 E-value=1.3e+02 Score=26.30 Aligned_cols=29 Identities=24% Similarity=0.340 Sum_probs=24.3
Q ss_pred CCchHHHHHHHHHHHHHHHHHHhhhccCC
Q 027214 190 RGFSLMFAAFVGLIGIMVGLILNLLLSSP 218 (226)
Q Consensus 190 ~g~s~~~v~lv~lla~~lG~~l~~~~~~~ 218 (226)
..|.-.++.++|=+||++|..++++--.|
T Consensus 75 ~~f~r~~lAlAASVAFv~Gl~~~~~~~~~ 103 (232)
T PF11859_consen 75 PRFARWHLALAASVAFVVGLSFGQLNWGP 103 (232)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 45677888999999999999999887666
No 159
>TIGR02327 int_mem_ywzB conserved hypothetical integral membrane protein. Members of this protein family are small, typically about 80 residues in length, and are highly hydrophobic. The gene is found so far only in a subset of the Firmicutes in association with genes of the ATP synthase F1 complex or NADH-quinone oxidoreductase. This family includes ywzB from Bacillus subtilis; Pfam model pfam06612 describes the same family as Protein of unknown function DUF1146.
Probab=36.83 E-value=34 Score=24.08 Aligned_cols=20 Identities=25% Similarity=0.311 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 027214 194 LMFAAFVGLIGIMVGLILNL 213 (226)
Q Consensus 194 ~~~v~lv~lla~~lG~~l~~ 213 (226)
...=+++.++|+.+||....
T Consensus 33 ~q~~ll~vllaIalGylvs~ 52 (68)
T TIGR02327 33 GQLRVLVVLIAIALGYTVSH 52 (68)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 33447777888888887654
No 160
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=36.77 E-value=68 Score=25.12 Aligned_cols=23 Identities=17% Similarity=0.296 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 027214 155 ALQRLKDERDAAVRQTQLLQQDL 177 (226)
Q Consensus 155 ~i~~L~eE~~~~~~en~~L~~el 177 (226)
.+.+|.+|+.+|+-||..|++.+
T Consensus 4 t~EeLaaeL~kLqmENk~LKkkl 26 (118)
T PF05812_consen 4 TMEELAAELQKLQMENKALKKKL 26 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHH
Confidence 45689999999999999999874
No 161
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=36.63 E-value=85 Score=22.86 Aligned_cols=26 Identities=27% Similarity=0.405 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027214 155 ALQRLKDERDAAVRQTQLLQQDLDML 180 (226)
Q Consensus 155 ~i~~L~eE~~~~~~en~~L~~el~~l 180 (226)
.+.+++.|..++..||.+|+-|...+
T Consensus 43 ~l~~l~~~~~~l~~e~~~L~lE~~~l 68 (97)
T PF04999_consen 43 ELQQLEKEIDQLQEENERLRLEIATL 68 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45666777777777777777666544
No 162
>PHA03155 hypothetical protein; Provisional
Probab=36.58 E-value=53 Score=25.55 Aligned_cols=23 Identities=17% Similarity=0.290 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 027214 155 ALQRLKDERDAAVRQTQLLQQDL 177 (226)
Q Consensus 155 ~i~~L~eE~~~~~~en~~L~~el 177 (226)
.+.+|.+|+.+|+-||..|++.+
T Consensus 9 tvEeLaaeL~kL~~ENK~LKkkl 31 (115)
T PHA03155 9 DVEELEKELQKLKIENKALKKKL 31 (115)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHH
Confidence 34589999999999999999875
No 163
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=36.55 E-value=30 Score=28.62 Aligned_cols=21 Identities=33% Similarity=0.474 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 027214 161 DERDAAVRQTQLLQQDLDMLK 181 (226)
Q Consensus 161 eE~~~~~~en~~L~~el~~lr 181 (226)
+|+..|+.++++|++|+-.||
T Consensus 24 dEKE~L~~~~QRLkDE~RDLK 44 (166)
T PF04880_consen 24 DEKENLREEVQRLKDELRDLK 44 (166)
T ss_dssp HHHHHHHHCH-----------
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555554443
No 164
>PF13314 DUF4083: Domain of unknown function (DUF4083)
Probab=36.36 E-value=54 Score=22.41 Aligned_cols=25 Identities=16% Similarity=0.272 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHhhhccCCCC
Q 027214 196 FAAFVGLIGIMVGLILNLLLSSPPP 220 (226)
Q Consensus 196 ~v~lv~lla~~lG~~l~~~~~~~~~ 220 (226)
.+.++.|+++..|.|++.++++-.+
T Consensus 12 Vi~l~vl~~~~Ftl~IRri~~~s~~ 36 (58)
T PF13314_consen 12 VIILIVLFGASFTLFIRRILINSNA 36 (58)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3456666677777777777766444
No 165
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=35.98 E-value=77 Score=27.70 Aligned_cols=27 Identities=22% Similarity=0.166 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHh
Q 027214 157 QRLKDERDAAVRQTQ---LLQQDLDMLKRR 183 (226)
Q Consensus 157 ~~L~eE~~~~~~en~---~L~~el~~lr~~ 183 (226)
.+|++|..+++.++. .|++|.++||+.
T Consensus 79 ~~L~~e~~~l~~~~~~~~~l~~en~~L~~l 108 (276)
T PRK13922 79 EELKKELLELESRLQELEQLEAENARLREL 108 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444433333 334444555543
No 166
>PF01105 EMP24_GP25L: emp24/gp25L/p24 family/GOLD; InterPro: IPR009038 The GOLD (for Golgi dynamics) domain is a protein module found in several eukaryotic Golgi and lipid-traffic proteins. It is typically between 90 and 150 amino acids long. Most of the size difference observed in the GOLD-domain superfamily is traceable to a single large low-complexity insert that is seen in some versions of the domain. With the exception of the p24 proteins, which have a simple architecture with the GOLD domain as their only globular domain, all other GOLD-domain proteins contain additional conserved globular domains. In these proteins, the GOLD domain co-occurs with lipid-, sterol- or fatty acid-binding domains such as PH, CRAL-TRIO, FYVE oxysterol binding- and acyl CoA-binding domains, suggesting that these proteins may interact with membranes. The GOLD domain can also be found associated with a RUN domain, which may have a role in the interaction of various proteins with cytoskeletal filaments. The GOLD domain is predicted to mediate diverse protein-protein interactions []. A secondary structure prediction for the GOLD domain reveals that it is likely to adopt a compact all-beta-fold structure with six to seven strands. Most of the sequence conservation is centred on the hydrophobic cores that support these predicted strands. The predicted secondary-structure elements and the size of the conserved core of the domain suggests that it may form a beta- sandwich fold with the strands arranged in two beta sheets stacked on each other []. Some proteins known to contain a GOLD domain are listed below: Eukaryotic proteins of the p24 family. Animal Sec14-like proteins. They are involved in secretion. Human Golgi resident protein GCP60. It interacts with the Golgi integral membrane protein Giantin. Yeast oxysterol-binding protein homologue 3 (OSH3). ; GO: 0006810 transport, 0016021 integral to membrane; PDB: 1P23_A 1M23_A.
Probab=35.94 E-value=13 Score=29.41 Aligned_cols=26 Identities=12% Similarity=0.134 Sum_probs=3.0
Q ss_pred CCchHHHHHHHHHHHHHHHHHHhhhc
Q 027214 190 RGFSLMFAAFVGLIGIMVGLILNLLL 215 (226)
Q Consensus 190 ~g~s~~~v~lv~lla~~lG~~l~~~~ 215 (226)
.-++++.++++++++++=-|+|+-+|
T Consensus 157 ~~~si~~~~vli~~~~~Qv~~lk~~f 182 (183)
T PF01105_consen 157 MWWSIIQIVVLILVSVWQVYYLKKFF 182 (183)
T ss_dssp ---------------------HHHHH
T ss_pred EhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34566667777777777677776554
No 167
>PF13544 N_methyl_2: Type IV pilin N-term methylation site GFxxxE; PDB: 3SOK_A 2HIL_L 1AY2_A 2PIL_A 2HI2_A 1OQW_A.
Probab=35.80 E-value=43 Score=19.66 Aligned_cols=16 Identities=31% Similarity=0.355 Sum_probs=5.3
Q ss_pred CCCCchHHHHHHHHHH
Q 027214 188 GVRGFSLMFAAFVGLI 203 (226)
Q Consensus 188 ~~~g~s~~~v~lv~ll 203 (226)
+..||++.=++++..|
T Consensus 12 ~~~GFTLiEllVa~~I 27 (31)
T PF13544_consen 12 RQRGFTLIELLVAMAI 27 (31)
T ss_dssp ------HHHHHHHHHH
T ss_pred ccCCccHHHHHHHHHH
Confidence 4589998765444433
No 168
>PRK02119 hypothetical protein; Provisional
Probab=35.64 E-value=1e+02 Score=21.75 Aligned_cols=29 Identities=14% Similarity=0.119 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027214 155 ALQRLKDERDAAVRQTQLLQQDLDMLKRR 183 (226)
Q Consensus 155 ~i~~L~eE~~~~~~en~~L~~el~~lr~~ 183 (226)
.|..|.+.+.+..+++..|+.++..|+.+
T Consensus 24 tie~LN~~v~~Qq~~id~L~~ql~~L~~r 52 (73)
T PRK02119 24 LLEELNQALIEQQFVIDKMQVQLRYMANK 52 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666677778888887777554
No 169
>PF13334 DUF4094: Domain of unknown function (DUF4094)
Probab=35.43 E-value=36 Score=25.47 Aligned_cols=24 Identities=8% Similarity=0.394 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHhh-hccCCC
Q 027214 196 FAAFVGLIGIMVGLILNL-LLSSPP 219 (226)
Q Consensus 196 ~v~lv~lla~~lG~~l~~-~~~~~~ 219 (226)
.++++|+.+|++|.++-. +...|.
T Consensus 4 w~l~Lc~~SF~~G~lft~R~W~~pe 28 (95)
T PF13334_consen 4 WVLLLCIASFCAGMLFTNRMWTVPE 28 (95)
T ss_pred HHHHHHHHHHHHHHHHhcccccCCc
Confidence 478999999999988866 555553
No 170
>PF09640 DUF2027: Domain of unknown function (DUF2027); InterPro: IPR018598 This protein domain is of unknown function. though putatively involved in DNA mismatch repair. It is associated with IPR002625 from INTERPRO. ; PDB: 2HUH_A.
Probab=35.36 E-value=77 Score=26.16 Aligned_cols=67 Identities=12% Similarity=0.171 Sum_probs=47.5
Q ss_pred eEeEEEEEcCCCCeEEEEEEeCCCCcEEEeCCeeeeCCCCeEEEEEEeccccCCCCCCCCCCeEEEEEEecCCC
Q 027214 27 GFCDLKVINNTEHHVAFKVKTTSPKKYFVRPNTGVVQPWDSCIIRVTLQAQRESPPDMQCKDKFLLQSTIVPSN 100 (226)
Q Consensus 27 ~~~~l~L~N~s~~~vaFKVKTT~p~~Y~VrP~~G~I~P~~s~~I~V~l~~~~~~p~~~~~~dKFlVqs~~~~~~ 100 (226)
.+-..-|.|-|+..+-|-.-+...+.|.+| +.|.|+|+..+-|.-.-.. +. ..-.+..||.+.--.+
T Consensus 18 T~fE~YlVNDSNYy~~y~y~~~~g~~w~lr-s~G~iEPNtKl~ieef~~~--eL----N~~~~v~vQ~iAyK~~ 84 (162)
T PF09640_consen 18 TRFECYLVNDSNYYLHYTYLTAEGNSWTLR-SAGEIEPNTKLFIEEFSKE--EL----NDLERVAVQLIAYKKD 84 (162)
T ss_dssp --EEEEEEE-SSSEEEEEEEEEETTEEEEE-EEEEE-TTEEEEEEEE-GG--GG----GG-SSEEEEEEEE-SS
T ss_pred CceEEEEEecCccEEEEEEEeccCCeEEEE-ecceECCCceeehhhcCHH--Hh----hccceeEEEEEEEcCC
Confidence 355778999999999999999989899998 7899999999888655333 11 1245688888876654
No 171
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=35.16 E-value=89 Score=23.11 Aligned_cols=23 Identities=9% Similarity=0.258 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 027214 157 QRLKDERDAAVRQTQLLQQDLDM 179 (226)
Q Consensus 157 ~~L~eE~~~~~~en~~L~~el~~ 179 (226)
.+++.+.++|.+||++|+.|...
T Consensus 26 ~ka~~~~~kL~~en~qlk~Ek~~ 48 (87)
T PF10883_consen 26 KKAKKQNAKLQKENEQLKTEKAV 48 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 56667777777777777777543
No 172
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=35.13 E-value=88 Score=20.09 Aligned_cols=28 Identities=18% Similarity=0.213 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027214 157 QRLKDERDAAVRQTQLLQQDLDMLKRRG 184 (226)
Q Consensus 157 ~~L~eE~~~~~~en~~L~~el~~lr~~~ 184 (226)
..|+...+.+..++..|++|.+.|+...
T Consensus 8 ~~LK~~yd~Lk~~~~~L~~E~~~L~aev 35 (45)
T PF02183_consen 8 DALKASYDSLKAEYDSLKKENEKLRAEV 35 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677778888888888888888877653
No 173
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=34.97 E-value=39 Score=25.79 Aligned_cols=33 Identities=18% Similarity=0.376 Sum_probs=24.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027214 150 PDANSALQRLKDERDAAVRQTQLLQQDLDMLKR 182 (226)
Q Consensus 150 ~e~~~~i~~L~eE~~~~~~en~~L~~el~~lr~ 182 (226)
.+....|..+.+++..+.++|..|++++..|+.
T Consensus 21 ~eVD~fl~~l~~~~~~l~~e~~~L~~~~~~l~~ 53 (131)
T PF05103_consen 21 DEVDDFLDELAEELERLQRENAELKEEIEELQA 53 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356667788888888888888888887765543
No 174
>KOG3287 consensus Membrane trafficking protein, emp24/gp25L/p24 family [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.82 E-value=1.8e+02 Score=25.30 Aligned_cols=30 Identities=20% Similarity=0.359 Sum_probs=25.4
Q ss_pred chHHHHHHHHHHHHHHHHHHhhhccCCCCC
Q 027214 192 FSLMFAAFVGLIGIMVGLILNLLLSSPPPT 221 (226)
Q Consensus 192 ~s~~~v~lv~lla~~lG~~l~~~~~~~~~~ 221 (226)
.|....+.+.++|+|--|+++-||.-++++
T Consensus 200 WS~vq~~vmi~v~~iQVf~lrslFe~~~~~ 229 (236)
T KOG3287|consen 200 WSMVQTLVMILVGIIQVFMLRSLFEVKSKS 229 (236)
T ss_pred HHHHHHHHHHHHhhhhhhhhHHHhcCCCCc
Confidence 456777888899999999999999877765
No 175
>PHA03162 hypothetical protein; Provisional
Probab=34.71 E-value=57 Score=26.03 Aligned_cols=23 Identities=13% Similarity=0.241 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 027214 155 ALQRLKDERDAAVRQTQLLQQDL 177 (226)
Q Consensus 155 ~i~~L~eE~~~~~~en~~L~~el 177 (226)
.+.+|.+|+.+|+-||..|++.+
T Consensus 14 tmEeLaaeL~kLqmENK~LKkkl 36 (135)
T PHA03162 14 TMEDLAAEIAKLQLENKALKKKI 36 (135)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHH
Confidence 35689999999999999999875
No 176
>PRK00736 hypothetical protein; Provisional
Probab=34.54 E-value=1.1e+02 Score=21.21 Aligned_cols=30 Identities=20% Similarity=0.413 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027214 154 SALQRLKDERDAAVRQTQLLQQDLDMLKRR 183 (226)
Q Consensus 154 ~~i~~L~eE~~~~~~en~~L~~el~~lr~~ 183 (226)
..|..|.+.+.+-.+++..|+.++..|+.+
T Consensus 19 ~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~r 48 (68)
T PRK00736 19 KTIEELSDQLAEQWKTVEQMRKKLDALTER 48 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677777777777788888887777544
No 177
>TIGR03592 yidC_oxa1_cterm membrane protein insertase, YidC/Oxa1 family, C-terminal domain. This model describes full-length from some species, and the C-terminal region only from other species, of the YidC/Oxa1 family of proteins. This domain appears to be univeral among bacteria (although absent from Archaea). The well-characterized YidC protein from Escherichia coli and its close homologs contain a large N-terminal periplasmic domain in addition to the region modeled here.
Probab=34.48 E-value=2e+02 Score=23.59 Aligned_cols=17 Identities=29% Similarity=0.315 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHhc
Q 027214 168 RQTQLLQQDLDMLKRRG 184 (226)
Q Consensus 168 ~en~~L~~el~~lr~~~ 184 (226)
++-+++++|...+.++.
T Consensus 47 ~~~~~~~~e~~~l~k~~ 63 (181)
T TIGR03592 47 DDPQKLQQEMMKLYKEE 63 (181)
T ss_pred hhHHHHHHHHHHHHHHh
Confidence 34456777776666654
No 178
>PF10342 GPI-anchored: Ser-Thr-rich glycosyl-phosphatidyl-inositol-anchored membrane family; InterPro: IPR018466 This entry represents glycoproteins involved in cell wall (1-->6)-beta-glucan assembly. In yeast a null mutation leads to severe growth defects, aberrant multi-budded morphology, and mating defects [, ]. The entry includes DRMIP and Hesp-379, which are involved in both fruiting body formation and in host attack respectively. Hesp-379 is a haustorially expressed secreted protein; the haustorium being the small sucker that penetrates host tissue [].
Probab=34.17 E-value=1.6e+02 Score=20.54 Aligned_cols=59 Identities=10% Similarity=0.159 Sum_probs=38.2
Q ss_pred cCeeEEeeecCceeEeEEEEEcCCC--CeEEEEEEeC---CCCcEEEeCCeeeeCCCCeEEEEEE
Q 027214 14 PEELKFIFELEKQGFCDLKVINNTE--HHVAFKVKTT---SPKKYFVRPNTGVVQPWDSCIIRVT 73 (226)
Q Consensus 14 P~eL~F~~~~~~~~~~~l~L~N~s~--~~vaFKVKTT---~p~~Y~VrP~~G~I~P~~s~~I~V~ 73 (226)
|..+.+....+......|.|.|..+ -.....|.+. +.+.|.+.++.+ |.++....|.+.
T Consensus 14 ~~~I~W~~~~~~~~~~~I~L~~g~~~~~~~~~~ia~~v~~~~gs~~~~~p~~-l~~~~~Y~i~~~ 77 (93)
T PF10342_consen 14 PITITWTSDGTDPGNVTIYLCNGNNTNLNFVQTIASNVSNSDGSYTWTIPSD-LPSGGDYFIQIV 77 (93)
T ss_pred cEEEEEeCCCCCCcEEEEEEEcCCCCCcceeEEEEecccCCCCEEEEEcCCC-CCCCCcEEEEEE
Confidence 3367777654456788999999765 2222334322 237899988776 566667777777
No 179
>COG1963 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.96 E-value=1.1e+02 Score=25.00 Aligned_cols=27 Identities=19% Similarity=0.240 Sum_probs=23.1
Q ss_pred CCchHHHHHHHHHHHHHHHHHHhhhcc
Q 027214 190 RGFSLMFAAFVGLIGIMVGLILNLLLS 216 (226)
Q Consensus 190 ~g~s~~~v~lv~lla~~lG~~l~~~~~ 216 (226)
-|+...-|+.=.++|++++|++...|.
T Consensus 126 lGH~p~eV~~G~~lGI~i~~i~~~~~~ 152 (153)
T COG1963 126 LGHTPLEVFAGLLLGILIAWIFYAFFM 152 (153)
T ss_pred hCCChHHHHHHHHHHHHHHHHHHHHhc
Confidence 477788899999999999999987764
No 180
>COG3121 FimC P pilus assembly protein, chaperone PapD [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=33.73 E-value=82 Score=27.24 Aligned_cols=43 Identities=21% Similarity=0.205 Sum_probs=33.1
Q ss_pred eEEEEEcCCCCeEEEE--EEeCCCCcEEEeCCeeeeCCCCeEEEEEE
Q 027214 29 CDLKVINNTEHHVAFK--VKTTSPKKYFVRPNTGVVQPWDSCIIRVT 73 (226)
Q Consensus 29 ~~l~L~N~s~~~vaFK--VKTT~p~~Y~VrP~~G~I~P~~s~~I~V~ 73 (226)
..|+++|+|..++.|- .-+. .++-.. -+.+.|.|+++..+.+.
T Consensus 165 ~~l~v~Nptpy~vtl~~~~l~~-~~~~~~-~~~~mv~P~s~~~~~l~ 209 (235)
T COG3121 165 NLLTVKNPTPYYVTLANLTLNV-GGRKLG-LNSGMVAPFSTRQFPLP 209 (235)
T ss_pred CEEEEECCCCcEEEEEEEEEee-CceecC-CCcceECCCccceeecC
Confidence 6899999999999998 4333 444333 78999999999986655
No 181
>PF14235 DUF4337: Domain of unknown function (DUF4337)
Probab=33.51 E-value=2.6e+02 Score=22.76 Aligned_cols=22 Identities=18% Similarity=0.291 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 027214 155 ALQRLKDERDAAVRQTQLLQQD 176 (226)
Q Consensus 155 ~i~~L~eE~~~~~~en~~L~~e 176 (226)
.+.+.++|..+++++.+.|+++
T Consensus 74 ~i~~Y~~~~~~~~~e~~~l~~~ 95 (157)
T PF14235_consen 74 KIARYKKEKARYKSEAEELEAK 95 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444443
No 182
>PRK04325 hypothetical protein; Provisional
Probab=33.47 E-value=1.2e+02 Score=21.51 Aligned_cols=29 Identities=21% Similarity=0.291 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027214 155 ALQRLKDERDAAVRQTQLLQQDLDMLKRR 183 (226)
Q Consensus 155 ~i~~L~eE~~~~~~en~~L~~el~~lr~~ 183 (226)
+|..|.+.+.+..+++..|+.++..|..+
T Consensus 24 tIe~LN~vv~~Qq~~I~~L~~ql~~L~~r 52 (74)
T PRK04325 24 LIDGLNATVARQQQTLDLLQAQLRLLYQQ 52 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666776666777778888877766544
No 183
>COG1930 CbiN ABC-type cobalt transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=33.43 E-value=8.4 Score=28.81 Aligned_cols=22 Identities=23% Similarity=0.333 Sum_probs=18.1
Q ss_pred chHHHHHHHHHHHHHHHHHHhh
Q 027214 192 FSLMFAAFVGLIGIMVGLILNL 213 (226)
Q Consensus 192 ~s~~~v~lv~lla~~lG~~l~~ 213 (226)
=|++|.+=.+|=|.+|||++|.
T Consensus 65 ESLLFslQaaiGa~IIgY~lGy 86 (97)
T COG1930 65 ESLLFSLQAAIGAGIIGYFLGY 86 (97)
T ss_pred HHHHHHHHHHhcceeeeeeeee
Confidence 3688888888889999998874
No 184
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.88 E-value=1.2e+02 Score=21.68 Aligned_cols=22 Identities=23% Similarity=0.450 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 027214 157 QRLKDERDAAVRQTQLLQQDLD 178 (226)
Q Consensus 157 ~~L~eE~~~~~~en~~L~~el~ 178 (226)
+.++..+..+.++|++|++|-.
T Consensus 42 q~~q~~reaL~~eneqlk~e~~ 63 (79)
T COG3074 42 QNAQHQREALERENEQLKEEQN 63 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555666665543
No 185
>PF06483 ChiC: Chitinase C; InterPro: IPR009470 This ~170 aa region is found at the C-terminal to the catalytic domain (IPR001223 from INTERPRO) found in members of glycoside hydrolase family 18.
Probab=32.81 E-value=50 Score=27.71 Aligned_cols=26 Identities=23% Similarity=0.368 Sum_probs=22.2
Q ss_pred CeEEEEEEeCCCCcEEEeCCeeeeCCCCeEEEEEEec
Q 027214 39 HHVAFKVKTTSPKKYFVRPNTGVVQPWDSCIIRVTLQ 75 (226)
Q Consensus 39 ~~vaFKVKTT~p~~Y~VrP~~G~I~P~~s~~I~V~l~ 75 (226)
+||+||+ |.+.-|.||+++++.+...
T Consensus 116 Hrvs~tl-----------p~wqslapG~s~~~~~~Yy 141 (180)
T PF06483_consen 116 HRVSFTL-----------PAWQSLAPGASVELDMVYY 141 (180)
T ss_pred EEEEEEC-----------CCccccCCCCEEEEeEEEE
Confidence 7777777 8899999999999998843
No 186
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=32.73 E-value=92 Score=23.61 Aligned_cols=18 Identities=33% Similarity=0.545 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHhhhc
Q 027214 198 AFVGLIGIMVGLILNLLL 215 (226)
Q Consensus 198 ~lv~lla~~lG~~l~~~~ 215 (226)
++-.++|+++|..|---|
T Consensus 53 v~pil~G~~lG~WLD~~~ 70 (100)
T TIGR02230 53 AIPTLLGVAVGIWLDRHY 70 (100)
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 333444444444443333
No 187
>PF09813 Coiled-coil_56: Coiled-coil domain-containing protein 56; InterPro: IPR018628 Members of this family of proteins have no known function.
Probab=32.71 E-value=1e+02 Score=23.38 Aligned_cols=19 Identities=16% Similarity=0.214 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q 027214 196 FAAFVGLIGIMVGLILNLL 214 (226)
Q Consensus 196 ~v~lv~lla~~lG~~l~~~ 214 (226)
.+..++|.|+++|-+.--+
T Consensus 52 ~~Tgl~L~~~v~gIY~YTi 70 (100)
T PF09813_consen 52 LLTGLALGAFVVGIYAYTI 70 (100)
T ss_pred HHHHHHHHHHHHHHHhhee
Confidence 3444556666666554433
No 188
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is
Probab=32.59 E-value=27 Score=25.70 Aligned_cols=22 Identities=27% Similarity=0.587 Sum_probs=15.8
Q ss_pred EEEEEeCCCC--cEEEeCCeeeeC
Q 027214 42 AFKVKTTSPK--KYFVRPNTGVVQ 63 (226)
Q Consensus 42 aFKVKTT~p~--~Y~VrP~~G~I~ 63 (226)
+||+|+.+.+ ||++.|+.|+-+
T Consensus 2 ~FK~~~~~GrvhRf~~~~s~~~~~ 25 (86)
T cd06409 2 AFKFKDPKGRVHRFRLRPSESLEE 25 (86)
T ss_pred cEEeeCCCCCEEEEEecCCCCHHH
Confidence 6999987666 667777777543
No 189
>TIGR01165 cbiN cobalt transport protein. This model describes the cobalt transporter in bacteria and its equivalents in archaea. It principally functions in the ion uptake mechanism. It is a multisubunit transporter with two integral membrane proteins and two closely associated cytoplasmic subunits. This transporter belongs to the ABC transporter superfamily (ATP stands for ATP Binding Cassette). This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=32.52 E-value=9 Score=28.59 Aligned_cols=25 Identities=24% Similarity=0.369 Sum_probs=20.6
Q ss_pred CCchHHHHHHHHHHHHHHHHHHhhh
Q 027214 190 RGFSLMFAAFVGLIGIMVGLILNLL 214 (226)
Q Consensus 190 ~g~s~~~v~lv~lla~~lG~~l~~~ 214 (226)
..=|++|++=.+|=|.+|||++|..
T Consensus 65 EiESlLFaLQAaiGagiIgY~~G~~ 89 (91)
T TIGR01165 65 EIESLLFALQAALGALVIGYVIGYY 89 (91)
T ss_pred hHHHHHHHHHHHhhheeeeEEEEEe
Confidence 3357899999999999999998753
No 190
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=32.50 E-value=79 Score=24.42 Aligned_cols=30 Identities=20% Similarity=0.191 Sum_probs=25.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027214 150 PDANSALQRLKDERDAAVRQTQLLQQDLDM 179 (226)
Q Consensus 150 ~e~~~~i~~L~eE~~~~~~en~~L~~el~~ 179 (226)
++.++.+..+.+|...++-||.+|++.|..
T Consensus 25 ~~lK~~l~~lvEEN~~L~lENe~LR~RL~~ 54 (114)
T COG4467 25 GGLKQHLGSLVEENTALRLENEKLRERLGE 54 (114)
T ss_pred HHHHHHHHHHHHhhHHHHhhHHHHHHHhCC
Confidence 345778899999999999999999998765
No 191
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=32.50 E-value=1e+02 Score=30.34 Aligned_cols=31 Identities=19% Similarity=0.247 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 027214 155 ALQRLKDERDAAVRQTQLLQQDLDMLKRRGQ 185 (226)
Q Consensus 155 ~i~~L~eE~~~~~~en~~L~~el~~lr~~~~ 185 (226)
.+.-|+.-++++.+||++|+.|=..||++..
T Consensus 303 y~~~Le~rLq~ll~Ene~Lk~ENatLk~qL~ 333 (655)
T KOG4343|consen 303 YMLGLEARLQALLSENEQLKKENATLKRQLD 333 (655)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 3456777778899999999999999998755
No 192
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=31.99 E-value=87 Score=27.64 Aligned_cols=19 Identities=11% Similarity=0.288 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 027214 153 NSALQRLKDERDAAVRQTQ 171 (226)
Q Consensus 153 ~~~i~~L~eE~~~~~~en~ 171 (226)
...|..|.||...|+-||+
T Consensus 96 e~~i~dL~een~~L~~en~ 114 (292)
T KOG4005|consen 96 EYEIKDLTEENEILQNEND 114 (292)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3345555555544444433
No 193
>PF13314 DUF4083: Domain of unknown function (DUF4083)
Probab=31.62 E-value=70 Score=21.88 Aligned_cols=23 Identities=17% Similarity=0.465 Sum_probs=18.3
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhc
Q 027214 193 SLMFAAFVGLIGIMVGLILNLLL 215 (226)
Q Consensus 193 s~~~v~lv~lla~~lG~~l~~~~ 215 (226)
.+.+.++|+++.+++|..|+++.
T Consensus 5 ~~Iy~~~Vi~l~vl~~~~Ftl~I 27 (58)
T PF13314_consen 5 DLIYYILVIILIVLFGASFTLFI 27 (58)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778888899999998888653
No 194
>PF15058 Speriolin_N: Speriolin N terminus
Probab=31.58 E-value=63 Score=27.48 Aligned_cols=25 Identities=16% Similarity=0.371 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 027214 153 NSALQRLKDERDAAVRQTQLLQQDL 177 (226)
Q Consensus 153 ~~~i~~L~eE~~~~~~en~~L~~el 177 (226)
+..|.+|..|..+++++.+-++++.
T Consensus 11 rhqierLv~ENeeLKKlVrLirEN~ 35 (200)
T PF15058_consen 11 RHQIERLVRENEELKKLVRLIRENH 35 (200)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 5667777777777777766666543
No 195
>KOG4253 consensus Tryptophan-rich basic nuclear protein [General function prediction only]
Probab=31.33 E-value=83 Score=25.95 Aligned_cols=16 Identities=25% Similarity=0.374 Sum_probs=9.6
Q ss_pred hhHHHHHHHHHHHHHH
Q 027214 150 PDANSALQRLKDERDA 165 (226)
Q Consensus 150 ~e~~~~i~~L~eE~~~ 165 (226)
++..+++.++++|++.
T Consensus 47 ~q~~~ei~dmKqelna 62 (175)
T KOG4253|consen 47 SQKVAEIQDMKQELNA 62 (175)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 4455566666666654
No 196
>PF11166 DUF2951: Protein of unknown function (DUF2951); InterPro: IPR021337 This family of proteins has no known function. It has a highly conserved sequence.
Probab=31.11 E-value=2.3e+02 Score=21.34 Aligned_cols=20 Identities=30% Similarity=0.527 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHhhhc
Q 027214 196 FAAFVGLIGIMVGLILNLLL 215 (226)
Q Consensus 196 ~v~lv~lla~~lG~~l~~~~ 215 (226)
=+-+.+++|-++|-|+=+++
T Consensus 73 KmwilGlvgTi~gsliia~l 92 (98)
T PF11166_consen 73 KMWILGLVGTIFGSLIIALL 92 (98)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666654443
No 197
>PRK00753 psbL photosystem II reaction center L; Provisional
Probab=31.03 E-value=34 Score=21.32 Aligned_cols=9 Identities=44% Similarity=0.840 Sum_probs=3.7
Q ss_pred HHHhhhccC
Q 027214 209 LILNLLLSS 217 (226)
Q Consensus 209 ~~l~~~~~~ 217 (226)
+.++.||||
T Consensus 27 fvl~vLFss 35 (39)
T PRK00753 27 FVLGILFSS 35 (39)
T ss_pred HHHHHHHHh
Confidence 333444443
No 198
>PF07664 FeoB_C: Ferrous iron transport protein B C terminus; InterPro: IPR011640 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions []. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus has been previously erroneously described as being ATP-binding []. Recent work shows that it is similar to eukaryotic G-proteins and that it is a GTPase [].; GO: 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane
Probab=31.00 E-value=99 Score=20.28 Aligned_cols=22 Identities=32% Similarity=0.528 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHh-hhccC
Q 027214 196 FAAFVGLIGIMVGLILN-LLLSS 217 (226)
Q Consensus 196 ~v~lv~lla~~lG~~l~-~~~~~ 217 (226)
..++-.+++++.|++++ .++..
T Consensus 5 ~y~~~~~~~l~~~~il~~~~~~~ 27 (54)
T PF07664_consen 5 LYLLGILVALLVGLILKKTILKG 27 (54)
T ss_pred HHHHHHHHHHHHHHHHHhhccCC
Confidence 34566777788888888 55543
No 199
>PRK00720 tatA twin arginine translocase protein A; Provisional
Probab=30.92 E-value=51 Score=23.89 Aligned_cols=17 Identities=18% Similarity=0.192 Sum_probs=10.1
Q ss_pred CCchHHHHHHHHHHHHH
Q 027214 190 RGFSLMFAAFVGLIGIM 206 (226)
Q Consensus 190 ~g~s~~~v~lv~lla~~ 206 (226)
+|++...++++++++++
T Consensus 2 gg~g~~ellIIlvIvll 18 (78)
T PRK00720 2 GSFSIWHWLIVLAVVLL 18 (78)
T ss_pred CCCcHHHHHHHHHHHHH
Confidence 35666666666655554
No 200
>TIGR03493 cellullose_BcsF celllulose biosynthesis operon protein BcsF/YhjT. Members of this protein family are found invariably together with genes of bacterial cellulose biosynthesis, and are presumed to be involved in the process. Members average about 63 amino acids in length and are not uncharacterized. The gene has been designated both YhjT and BcsF (bacterial cellulose synthesis F).
Probab=30.77 E-value=67 Score=22.23 Aligned_cols=21 Identities=19% Similarity=0.221 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q 027214 194 LMFAAFVGLIGIMVGLILNLL 214 (226)
Q Consensus 194 ~~~v~lv~lla~~lG~~l~~~ 214 (226)
+..+++-||+.|-+||++.-.
T Consensus 7 lQli~lcALIf~pLgyl~~r~ 27 (62)
T TIGR03493 7 LQLVLLCALIFFPLGYLARRS 27 (62)
T ss_pred HHHHHHHHHHHHhHHHHHHhh
Confidence 345788889999999987644
No 201
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=30.60 E-value=1.5e+02 Score=23.02 Aligned_cols=30 Identities=17% Similarity=0.271 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027214 155 ALQRLKDERDAAVRQTQLLQQDLDMLKRRG 184 (226)
Q Consensus 155 ~i~~L~eE~~~~~~en~~L~~el~~lr~~~ 184 (226)
++.-|++.+..+.+.|.+|++|-..||...
T Consensus 68 EVe~Lk~qI~eL~er~~~Le~EN~lLk~~~ 97 (123)
T KOG4797|consen 68 EVEVLKEQIRELEERNSALERENSLLKTLA 97 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 345566666666666777777766666543
No 202
>PF11668 Gp_UL130: HCMV glycoprotein pUL130; InterPro: IPR021038 This entry represents UL130 from Human cytomegalovirus, a glycoprotein secreted from infected cells that is incorporated into the virion envelope as a Golgi-matured form. The protein promotes endothelial cell infection through a producer cell modification of the virion [].
Probab=30.49 E-value=1.4e+02 Score=24.29 Aligned_cols=43 Identities=21% Similarity=0.405 Sum_probs=29.6
Q ss_pred eEEeeecC-ceeEeEEEEEcC---CCCeEEEEEEeC------CCCcEEEeCCe
Q 027214 17 LKFIFELE-KQGFCDLKVINN---TEHHVAFKVKTT------SPKKYFVRPNT 59 (226)
Q Consensus 17 L~F~~~~~-~~~~~~l~L~N~---s~~~vaFKVKTT------~p~~Y~VrP~~ 59 (226)
|.|....+ +-..|.++|.-- ..+.|+|++|-+ .+.-+|++||.
T Consensus 102 Lry~vkDG~~~~~C~m~v~TwA~~~~~~i~Fq~kiel~~A~~~~stiCthPnl 154 (156)
T PF11668_consen 102 LRYRVKDGTRWEMCIMRVQTWAHTKSNYIQFQVKIELTHAYRQPSTICTHPNL 154 (156)
T ss_pred EEEEeccCCceeeEEEEeeehhhhhcccEEEEEEEEEeeccCCccceeccccc
Confidence 56665433 456889998872 345599999843 36678999874
No 203
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=30.45 E-value=41 Score=27.38 Aligned_cols=25 Identities=20% Similarity=0.239 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 027214 157 QRLKDERDAAVRQTQLLQQDLDMLK 181 (226)
Q Consensus 157 ~~L~eE~~~~~~en~~L~~el~~lr 181 (226)
.+|+.+.+++.+|.++++++...-|
T Consensus 69 aKl~Rk~~kl~~el~~~~~~~~~~~ 93 (161)
T PF04420_consen 69 AKLNRKLDKLEEELEKLNKSLSSEK 93 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777778888887777765443
No 204
>KOG1692 consensus Putative cargo transport protein EMP24 (p24 protein family) [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.13 E-value=2e+02 Score=24.54 Aligned_cols=59 Identities=14% Similarity=0.111 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHhcccc-------CCCCchHHHHHHHHHHHHHHHHHHhhhcc
Q 027214 158 RLKDERDAAVRQTQ--LLQQDLDMLKRRGQRK-------GVRGFSLMFAAFVGLIGIMVGLILNLLLS 216 (226)
Q Consensus 158 ~L~eE~~~~~~en~--~L~~el~~lr~~~~~~-------~~~g~s~~~v~lv~lla~~lG~~l~~~~~ 216 (226)
+|++.+++|..-.. +-+||....|.+.++. +.-=.+++-.++++..+++=-|+|+-+|+
T Consensus 129 ~L~~~I~eL~~al~~Vk~EQeY~~~Rer~Hr~~nEntn~RVv~wsife~~vLi~~s~~QVyYLkRfFE 196 (201)
T KOG1692|consen 129 KLEEMIRELSEALTSVKHEQEYMEARERIHRNTNENTNSRVVLWSIFEALVLIAMSVLQVYYLKRFFE 196 (201)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhcccceeehHHHHHHHHHHHHHHHHHHHHHHhhe
Confidence 34444444443332 3446666666655532 11224566677777788888899998885
No 205
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=30.13 E-value=1.1e+02 Score=26.73 Aligned_cols=25 Identities=24% Similarity=0.340 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 027214 156 LQRLKDERDAAVRQTQLLQQDLDML 180 (226)
Q Consensus 156 i~~L~eE~~~~~~en~~L~~el~~l 180 (226)
..++.+|..+|++|+.+|+.+...+
T Consensus 71 ~~~l~~en~~L~~e~~~l~~~~~~~ 95 (276)
T PRK13922 71 LFDLREENEELKKELLELESRLQEL 95 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666666777776666665544
No 206
>PF12751 Vac7: Vacuolar segregation subunit 7; InterPro: IPR024260 Vac7 is localised at the vacuole membrane, a location which is consistent with its involvement in vacuole morphology and inheritance []. Vac7 has been shown to function as an upstream regulator of the Fab1 lipid kinase pathway []. The Fab1 lipid pathway is important for correct regulation of membrane trafficking events.
Probab=29.95 E-value=33 Score=32.11 Aligned_cols=18 Identities=17% Similarity=0.493 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 027214 195 MFAAFVGLIGIMVGLILN 212 (226)
Q Consensus 195 ~~v~lv~lla~~lG~~l~ 212 (226)
+.++++.++|+++||+|.
T Consensus 308 ~~i~~lL~ig~~~gFv~A 325 (387)
T PF12751_consen 308 LSILLLLVIGFAIGFVFA 325 (387)
T ss_pred HHHHHHHHHHHHHHhhhh
Confidence 333444445555555543
No 207
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=29.91 E-value=1.5e+02 Score=22.66 Aligned_cols=25 Identities=16% Similarity=0.329 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 027214 158 RLKDERDAAVRQTQLLQQDLDMLKR 182 (226)
Q Consensus 158 ~L~eE~~~~~~en~~L~~el~~lr~ 182 (226)
.+.++..++++.+.++++++..+|+
T Consensus 91 ~~~~~~~~l~~~~~~~~~~~k~lk~ 115 (118)
T PF13815_consen 91 ELQQEIEKLKQKLKKQKEEIKKLKK 115 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444443
No 208
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=29.85 E-value=49 Score=32.04 Aligned_cols=26 Identities=23% Similarity=0.281 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027214 156 LQRLKDERDAAVRQTQLLQQDLDMLKR 182 (226)
Q Consensus 156 i~~L~eE~~~~~~en~~L~~el~~lr~ 182 (226)
+..++ ++++|++|.++|+++++.+.+
T Consensus 27 ~~~~q-kie~L~kql~~Lk~q~~~l~~ 52 (489)
T PF11853_consen 27 IDLLQ-KIEALKKQLEELKAQQDDLND 52 (489)
T ss_pred hHHHH-HHHHHHHHHHHHHHhhccccc
Confidence 33444 666677777777776655443
No 209
>PRK13743 conjugal transfer protein TrbF; Provisional
Probab=29.78 E-value=65 Score=25.70 Aligned_cols=51 Identities=16% Similarity=0.253 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHHHHHHHHhhhcc
Q 027214 160 KDERDAAVRQTQLLQQDLDMLKRRGQRKGVRGFSLMFAAFVGLIGIMVGLILNLLLS 216 (226)
Q Consensus 160 ~eE~~~~~~en~~L~~el~~lr~~~~~~~~~g~s~~~v~lv~lla~~lG~~l~~~~~ 216 (226)
+|.++.....+++++.|.+.-++.. +..+-..+++.-+|+++=++++.+|+
T Consensus 13 ke~~~~~e~KIrq~~rd~~y~~R~~------~~Y~~LfiVFl~AG~vLw~vM~~iFd 63 (141)
T PRK13743 13 KEKKNDAELKIRQTKRDYDYERRVS------DIYFDLFIVFLTAGIVLWVIMHSIFD 63 (141)
T ss_pred hccCCChhHHHHhhhhhHHHHHHHH------HHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3444445556777777766544442 22333334445578899999999986
No 210
>PRK09039 hypothetical protein; Validated
Probab=29.75 E-value=98 Score=28.38 Aligned_cols=32 Identities=25% Similarity=0.236 Sum_probs=21.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027214 150 PDANSALQRLKDERDAAVRQTQLLQQDLDMLK 181 (226)
Q Consensus 150 ~e~~~~i~~L~eE~~~~~~en~~L~~el~~lr 181 (226)
+++...+..|+.++..++.|...|+.+++...
T Consensus 133 se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae 164 (343)
T PRK09039 133 ARALAQVELLNQQIAALRRQLAALEAALDASE 164 (343)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455667777777777777777777665544
No 211
>PF02419 PsbL: PsbL protein; InterPro: IPR003372 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbL found in PSII. PsbL is located in a gene cluster with PsbE, PsbF and PsbJ (PsbEFJL). Both PsbL and PsbJ (IPR002682 from INTERPRO) are essential for proper assembly of the OEC. Mutations in PsbL prevent the formation of both PSII core dimers and PSII-light harvesting complex []. In addition, both PsbL and PsbJ are involved in the unidirectional flow of electrons, where PsbJ regulates the forward electron flow from D2 (Qa) to the plastoquinone pool, and PsbL prevents the reduction of PSII by back electron flow from plastoquinol protecting PSII from photo-inactivation [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3A0H_L 3A0B_l 3ARC_l 1S5L_l 2AXT_l 3BZ2_L 4FBY_L 3PRQ_L 3PRR_L 3KZI_L ....
Probab=29.67 E-value=27 Score=21.60 Aligned_cols=7 Identities=0% Similarity=0.183 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 027214 198 AFVGLIG 204 (226)
Q Consensus 198 ~lv~lla 204 (226)
++|+++|
T Consensus 22 llifvl~ 28 (37)
T PF02419_consen 22 LLIFVLA 28 (37)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 212
>PF08606 Prp19: Prp19/Pso4-like; InterPro: IPR013915 This region is found specifically in PRP19-like protein. The region represented by this protein covers the sequence implicated in self-interaction and a coiled-coiled motif []. PRP19-like proteins form an oligomer that is necessary for spliceosome assembly [].
Probab=29.60 E-value=1.6e+02 Score=20.91 Aligned_cols=31 Identities=29% Similarity=0.354 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027214 154 SALQRLKDERDAAVRQTQLLQQDLDMLKRRG 184 (226)
Q Consensus 154 ~~i~~L~eE~~~~~~en~~L~~el~~lr~~~ 184 (226)
+.++.++.|-+.+.-|+=.|++.++..|+.-
T Consensus 8 ~lL~~lQnEWDa~mLE~f~LRk~l~~~rqEL 38 (70)
T PF08606_consen 8 SLLSTLQNEWDALMLENFTLRKQLDQTRQEL 38 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888888888888888888887777654
No 213
>PRK04561 tatA twin arginine translocase protein A; Provisional
Probab=29.55 E-value=57 Score=23.49 Aligned_cols=17 Identities=24% Similarity=0.251 Sum_probs=10.5
Q ss_pred CCchHHHHHHHHHHHHH
Q 027214 190 RGFSLMFAAFVGLIGIM 206 (226)
Q Consensus 190 ~g~s~~~v~lv~lla~~ 206 (226)
+|+++...+++++++++
T Consensus 2 gg~s~~ellIIlvIvlL 18 (75)
T PRK04561 2 GSFSIWHWLVVLVIVLL 18 (75)
T ss_pred CCCcHHHHHHHHHHHHH
Confidence 46777766666665554
No 214
>PF13205 Big_5: Bacterial Ig-like domain
Probab=29.50 E-value=2.1e+02 Score=20.39 Aligned_cols=56 Identities=11% Similarity=0.203 Sum_probs=35.7
Q ss_pred eeEEeeecCc-eeEeEEEEE--cCCCCeEEEEEEeCCCCcEEEeCCeeeeCCCCeEEEEEEe
Q 027214 16 ELKFIFELEK-QGFCDLKVI--NNTEHHVAFKVKTTSPKKYFVRPNTGVVQPWDSCIIRVTL 74 (226)
Q Consensus 16 eL~F~~~~~~-~~~~~l~L~--N~s~~~vaFKVKTT~p~~Y~VrP~~G~I~P~~s~~I~V~l 74 (226)
.|.|..+.+. .....+.+. +....+|.+. ....+.+.++|. +-+.||..+.|.|.-
T Consensus 26 ~i~Fs~~v~~~s~~~~~~~~~~~~~~~~v~~~--~~~~~~~~i~p~-~~L~~~t~Y~v~i~~ 84 (107)
T PF13205_consen 26 VITFSEPVDPASVSSAITITDSNGSGVPVSFS--SWDGNTLTITPS-QPLKPGTTYTVTIDS 84 (107)
T ss_pred EEEECCceecCccceEEEEEecCCCcEEEEEE--EccCCEEEEEEC-CcCCCCCEEEEEECC
Confidence 3666665432 334455564 3444555555 444589999998 557889999998853
No 215
>PF08402 TOBE_2: TOBE domain; InterPro: IPR013611 The TOBE domain [] (Transport-associated OB) always occurs as a dimer as the C-terminal strand of each domain is supplied by the partner. Probably involved in the recognition of small ligands such as molybdenum (e.g. P46930 from SWISSPROT) and sulphate (P16676 from SWISSPROT). Found in ABC transporters immediately after the ATPase domain. A strong RPE motif is found at the presumed N terminus of the domain. ; GO: 0005215 transporter activity, 0005524 ATP binding, 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0006810 transport, 0043190 ATP-binding cassette (ABC) transporter complex; PDB: 1Q12_A 1Q1B_C 2AWN_D 3RLF_B 3PUX_B 2R6G_B 3PUV_B 1Q1E_A 3PV0_B 2AWO_A ....
Probab=29.47 E-value=1.7e+02 Score=19.19 Aligned_cols=65 Identities=17% Similarity=0.267 Sum_probs=40.4
Q ss_pred EEEecCeeEEeeecCceeEeEEEEEcCCCCeEEEEEEeCCCCcEEEe-CCee---eeCCCCeEEEEEEe
Q 027214 10 ISVHPEELKFIFELEKQGFCDLKVINNTEHHVAFKVKTTSPKKYFVR-PNTG---VVQPWDSCIIRVTL 74 (226)
Q Consensus 10 L~i~P~eL~F~~~~~~~~~~~l~L~N~s~~~vaFKVKTT~p~~Y~Vr-P~~G---~I~P~~s~~I~V~l 74 (226)
|.|-|..+.+.........+.++-.--.....-+.+.+.......+. ++.. .+.+|+.+.|.+.-
T Consensus 1 l~iRPE~i~l~~~~~~~~~g~V~~~~~~G~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~G~~v~l~~~~ 69 (75)
T PF08402_consen 1 LGIRPEDIRLSPEGENRLPGTVVSVEFLGSETRYTVRLEGGEELVVRVPNSQRDSPLEPGDEVRLSWDP 69 (75)
T ss_dssp EEE-GGGEEEESSTTTEEEEEEEEEEEESSEEEEEEEETTSSEEEEEEESSG-TTT--TTSEEEEEEEG
T ss_pred CEECcceeEEECCCCCeEEEEEEEEEECCCEEEEEEEECCCCEEEEEecCccccCCCCCCCEEEEEECc
Confidence 56788877775222235566555555567777788888887764444 4444 68899988887763
No 216
>PF11382 DUF3186: Protein of unknown function (DUF3186); InterPro: IPR021522 This bacterial family of proteins has no known function.
Probab=29.31 E-value=86 Score=28.28 Aligned_cols=27 Identities=26% Similarity=0.447 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027214 156 LQRLKDERDAAVRQTQLLQQDLDMLKR 182 (226)
Q Consensus 156 i~~L~eE~~~~~~en~~L~~el~~lr~ 182 (226)
+..|+++...+++||+.|++|.+.++.
T Consensus 34 ~~~l~~~~~~lr~e~~~l~~~~~~~~~ 60 (308)
T PF11382_consen 34 IDSLEDQFDSLREENDELRAELDALQA 60 (308)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555555443
No 217
>PRK00846 hypothetical protein; Provisional
Probab=29.28 E-value=1.6e+02 Score=21.17 Aligned_cols=29 Identities=17% Similarity=0.039 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027214 155 ALQRLKDERDAAVRQTQLLQQDLDMLKRR 183 (226)
Q Consensus 155 ~i~~L~eE~~~~~~en~~L~~el~~lr~~ 183 (226)
.|..|.+.+.+..+++.+|+.++..|+.+
T Consensus 28 tIe~LN~~v~~qq~~I~~L~~ql~~L~~r 56 (77)
T PRK00846 28 ALTELSEALADARLTGARNAELIRHLLED 56 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777778888877766544
No 218
>PF03302 VSP: Giardia variant-specific surface protein; InterPro: IPR005127 During infection, the intestinal protozoan parasite Giardia lamblia virus undergoes continuous antigenic variation which is determined by diversification of the parasite's major surface antigen, named VSP (variant surface protein).
Probab=29.23 E-value=29 Score=32.46 Aligned_cols=22 Identities=27% Similarity=0.566 Sum_probs=15.4
Q ss_pred CCchHHHHHHHH-HHHHHHHHHH
Q 027214 190 RGFSLMFAAFVG-LIGIMVGLIL 211 (226)
Q Consensus 190 ~g~s~~~v~lv~-lla~~lG~~l 211 (226)
.|.++..|++|+ |+|||.-|||
T Consensus 370 aGIsvavvvvVgglvGfLcWwf~ 392 (397)
T PF03302_consen 370 AGISVAVVVVVGGLVGFLCWWFI 392 (397)
T ss_pred eeeeehhHHHHHHHHHHHhhhee
Confidence 466676665554 8888888876
No 219
>KOG4112 consensus Signal peptidase subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.70 E-value=74 Score=24.00 Aligned_cols=23 Identities=13% Similarity=0.381 Sum_probs=16.6
Q ss_pred CchHHHHHHHHHHHHHHHHHHhh
Q 027214 191 GFSLMFAAFVGLIGIMVGLILNL 213 (226)
Q Consensus 191 g~s~~~v~lv~lla~~lG~~l~~ 213 (226)
.++-+.+.+.+|+|++.||+-..
T Consensus 26 r~~q~ilti~aiVg~i~Gf~~Qq 48 (101)
T KOG4112|consen 26 RFQQLILTIGAIVGFIYGFAQQQ 48 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556677788889988887544
No 220
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=28.67 E-value=86 Score=25.90 Aligned_cols=20 Identities=30% Similarity=0.313 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 027214 158 RLKDERDAAVRQTQLLQQDL 177 (226)
Q Consensus 158 ~L~eE~~~~~~en~~L~~el 177 (226)
+|+.|+.+..+|+.-|+|-|
T Consensus 33 eLr~EL~KvEeEI~TLrqvL 52 (162)
T PF04201_consen 33 ELRSELAKVEEEIQTLRQVL 52 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555543
No 221
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=28.37 E-value=27 Score=28.89 Aligned_cols=25 Identities=20% Similarity=0.389 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027214 157 QRLKDERDAAVRQTQLLQQDLDMLKR 182 (226)
Q Consensus 157 ~~L~eE~~~~~~en~~L~~el~~lr~ 182 (226)
..|.++.++|++|.+-|++|+ .+|.
T Consensus 27 E~L~~~~QRLkDE~RDLKqEl-~V~e 51 (166)
T PF04880_consen 27 ENLREEVQRLKDELRDLKQEL-IVQE 51 (166)
T ss_dssp HHHHHCH-------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 478899999999999999998 4443
No 222
>PF08277 PAN_3: PAN-like domain; InterPro: IPR006583 PAN domains have significant functional versatility fulfilling diverse biological functions by mediating protein-protein or protein-carbohydrate interactions []. These domains contain a hair-pin loop like structure, similar to knottins, but the pattern of disulphide bonds differs The PAN-3 or CW is a domain associated with a number of Caenorhabditis elegans hypothetical proteins.
Probab=28.16 E-value=1e+02 Score=20.75 Aligned_cols=19 Identities=26% Similarity=0.186 Sum_probs=12.9
Q ss_pred eEeEEEEEcCCCCeEEEEE
Q 027214 27 GFCDLKVINNTEHHVAFKV 45 (226)
Q Consensus 27 ~~~~l~L~N~s~~~vaFKV 45 (226)
+...-++...+++.||||+
T Consensus 53 i~~v~~~~~~~~~~VA~K~ 71 (71)
T PF08277_consen 53 ISTVQKTDSSSGNKVAFKI 71 (71)
T ss_pred EEEEEEeecCCCeEEEEEC
Confidence 4444455556679999996
No 223
>PF08078 PsaX: PsaX family; InterPro: IPR012986 This family consists of the PsaX family of photosystem I (PSI) protein subunits. PSI is a large multi-subunit pigment protein complex embedded in the thylakoid membranes of green plants and cyanobacteria. PsaX is one of the 12 protein subunits found in PSI and these subunits are arranged as monomers or trimers within the membrane as shown by the structure of the trimeric complex from Synechococcus elongatus [].; PDB: 3PCQ_X 1JB0_X.
Probab=28.02 E-value=98 Score=19.00 Aligned_cols=20 Identities=0% Similarity=0.110 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q 027214 195 MFAAFVGLIGIMVGLILNLL 214 (226)
Q Consensus 195 ~~v~lv~lla~~lG~~l~~~ 214 (226)
..+++++|=-++.||++++|
T Consensus 18 Wa~llLaINflVAayYFhii 37 (37)
T PF08078_consen 18 WALLLLAINFLVAAYYFHII 37 (37)
T ss_dssp HHHHHHHHHHHHHHHHHTS-
T ss_pred HHHHHHHHHHHHHHHHheeC
Confidence 45677788788889998865
No 224
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=27.67 E-value=2.1e+02 Score=22.86 Aligned_cols=50 Identities=18% Similarity=0.216 Sum_probs=0.0
Q ss_pred EecCeeEEeeecCceeEeEEEEEcCCCCeEEEEEEeCCCCcEEEeCCeeeeCCCCeEEEEEE
Q 027214 12 VHPEELKFIFELEKQGFCDLKVINNTEHHVAFKVKTTSPKKYFVRPNTGVVQPWDSCIIRVT 73 (226)
Q Consensus 12 i~P~eL~F~~~~~~~~~~~l~L~N~s~~~vaFKVKTT~p~~Y~VrP~~G~I~P~~s~~I~V~ 73 (226)
.+|.+++.+. ..+-.++++|.++-+-.|-+.- |-+ .+.|+||++..|.++
T Consensus 58 ~~P~~I~Vka----GD~Vtl~vtN~d~~~H~f~i~~-----~gi---s~~I~pGet~TitF~ 107 (135)
T TIGR03096 58 NEPEALVVKK----GTPVKVTVENKSPISEGFSIDA-----YGI---SEVIKAGETKTISFK 107 (135)
T ss_pred EcCCEEEECC----CCEEEEEEEeCCCCccceEECC-----CCc---ceEECCCCeEEEEEE
No 225
>PRK15295 fimbrial assembly chaperone SthB; Provisional
Probab=27.35 E-value=1.3e+02 Score=25.85 Aligned_cols=40 Identities=25% Similarity=0.297 Sum_probs=29.5
Q ss_pred EEEEEcCCCCeEEEE-EEeCCCCcEEEeCCeeeeCCCCeEEEEEE
Q 027214 30 DLKVINNTEHHVAFK-VKTTSPKKYFVRPNTGVVQPWDSCIIRVT 73 (226)
Q Consensus 30 ~l~L~N~s~~~vaFK-VKTT~p~~Y~VrP~~G~I~P~~s~~I~V~ 73 (226)
.|++.|+|..++.|- ++... +. +. +.|.|.|+++..+.+.
T Consensus 158 ~l~v~NptPyyitl~~l~~~~-~~--~~-~~~mI~P~s~~~~~~~ 198 (226)
T PRK15295 158 VITVNNPTPYYMNFASVTLNS-HE--VK-SATFVPPKSSASFKLG 198 (226)
T ss_pred EEEEECCCceEEEEEEEEECC-cc--cC-CCceECCCCccEEEcc
Confidence 599999999999875 55432 22 22 3689999999988753
No 226
>COG5547 Small integral membrane protein [Function unknown]
Probab=27.14 E-value=90 Score=21.43 Aligned_cols=19 Identities=21% Similarity=0.506 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 027214 194 LMFAAFVGLIGIMVGLILN 212 (226)
Q Consensus 194 ~~~v~lv~lla~~lG~~l~ 212 (226)
..++++.+++|+-+|++.+
T Consensus 32 tilviil~~lGv~iGl~~~ 50 (62)
T COG5547 32 TILVIILILLGVYIGLYKK 50 (62)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4567777888888888764
No 227
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=27.11 E-value=1.4e+02 Score=22.78 Aligned_cols=32 Identities=13% Similarity=0.232 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027214 152 ANSALQRLKDERDAAVRQTQLLQQDLDMLKRR 183 (226)
Q Consensus 152 ~~~~i~~L~eE~~~~~~en~~L~~el~~lr~~ 183 (226)
....+.+|..++.++..|++-|++.....|++
T Consensus 76 ~~~ei~~L~~el~~L~~E~diLKKa~~~~~~~ 107 (121)
T PRK09413 76 AMKQIKELQRLLGKKTMENELLKEAVEYGRAK 107 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhchh
Confidence 45678899999999999999999988776654
No 228
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=26.84 E-value=1.3e+02 Score=26.48 Aligned_cols=29 Identities=21% Similarity=0.142 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027214 152 ANSALQRLKDERDAAVRQTQLLQQDLDML 180 (226)
Q Consensus 152 ~~~~i~~L~eE~~~~~~en~~L~~el~~l 180 (226)
+...|..|+.|+++|+-+++.++-+++.+
T Consensus 59 l~~ql~~lq~ev~~LrG~~E~~~~~l~~~ 87 (263)
T PRK10803 59 LQQQLSDNQSDIDSLRGQIQENQYQLNQV 87 (263)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 34455666667766666666555555443
No 229
>PRK15192 fimbrial chaperone BcfG; Provisional
Probab=26.81 E-value=1.7e+02 Score=25.44 Aligned_cols=40 Identities=23% Similarity=0.257 Sum_probs=28.6
Q ss_pred EEEEEcCCCCeEEEE-EEeCCCCcEEEeCCeeeeCCCCeEEEEEE
Q 027214 30 DLKVINNTEHHVAFK-VKTTSPKKYFVRPNTGVVQPWDSCIIRVT 73 (226)
Q Consensus 30 ~l~L~N~s~~~vaFK-VKTT~p~~Y~VrP~~G~I~P~~s~~I~V~ 73 (226)
.|++.|+|..+|.|- ++- +.+. + ...++|.|.++..+.+.
T Consensus 163 ~l~v~NpTPyyvtl~~l~v-~~~~--~-~~~~miaPfs~~~~~~~ 203 (234)
T PRK15192 163 GATVRNPTPYYVTLFLLRA-NERA--Q-DNAGVVAPFATRQTDWC 203 (234)
T ss_pred EEEEECCCCcEEEEEeEEE-cCcc--c-CCCceECCCCccEEecc
Confidence 399999999999885 333 2222 2 24578999999888763
No 230
>PTZ00478 Sec superfamily; Provisional
Probab=26.78 E-value=2e+02 Score=21.00 Aligned_cols=17 Identities=18% Similarity=0.444 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHhhhc
Q 027214 198 AFVGLIGIMVGLILNLLL 215 (226)
Q Consensus 198 ~lv~lla~~lG~~l~~~~ 215 (226)
+-++|+| +|||++++++
T Consensus 54 iGf~imG-~IGy~IKLIh 70 (81)
T PTZ00478 54 VGFFIMG-FIGYSIKLVF 70 (81)
T ss_pred HHHHHHH-HHHHhhheeE
Confidence 3334443 5799999876
No 231
>PHA03029 hypothetical protein; Provisional
Probab=26.71 E-value=89 Score=22.60 Aligned_cols=16 Identities=31% Similarity=0.727 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHh
Q 027214 197 AAFVGLIGIMVGLILN 212 (226)
Q Consensus 197 v~lv~lla~~lG~~l~ 212 (226)
+++++++|++-||++.
T Consensus 18 ilila~igiiwg~lls 33 (92)
T PHA03029 18 ILILAIIGIIWGFLLS 33 (92)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3455666666666654
No 232
>TIGR02459 CbtB cobalt transporter subunit CbtB (proposed). This model represents a family of proteins which have been proposed to act as cobalt transporters acting in concert with vitamin B12 biosynthesis systems. Evidence for this assignment includes 1) prediction of a single trans-membrane segment and a C-terminal histidine-rich motif likely to be a metal-binding site, 2) positional gene linkage with known B12 biosynthesis genes, 3) upstream proximity of B12 transcriptional regulatory sites, 4) the absence of other known cobalt import systems and 5) the obligate co-localization with a protein (CbtA) predicted to have five additional trans-membrane segments.
Probab=26.69 E-value=89 Score=21.53 Aligned_cols=20 Identities=20% Similarity=0.408 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 027214 194 LMFAAFVGLIGIMVGLILNL 213 (226)
Q Consensus 194 ~~~v~lv~lla~~lG~~l~~ 213 (226)
+..+++.+++|+++-||.|+
T Consensus 19 ~~~~~~a~~lgl~~ly~vG~ 38 (60)
T TIGR02459 19 LAAALVAALLGLFLVYFVGF 38 (60)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 56778888889999898876
No 233
>PRK02201 putative inner membrane protein translocase component YidC; Provisional
Probab=26.52 E-value=2.2e+02 Score=26.40 Aligned_cols=16 Identities=25% Similarity=0.312 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHhcc
Q 027214 170 TQLLQQDLDMLKRRGQ 185 (226)
Q Consensus 170 n~~L~~el~~lr~~~~ 185 (226)
-+++++|+..|.++..
T Consensus 186 ~~k~q~e~~~Lykk~g 201 (357)
T PRK02201 186 KQRKQQEIQELYKKHN 201 (357)
T ss_pred HHHHHHHHHHHHHHcC
Confidence 3567777777776644
No 234
>PRK14139 heat shock protein GrpE; Provisional
Probab=26.41 E-value=2.5e+02 Score=23.63 Aligned_cols=32 Identities=13% Similarity=0.165 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 027214 154 SALQRLKDERDAAVRQTQLLQQDLDMLKRRGQ 185 (226)
Q Consensus 154 ~~i~~L~eE~~~~~~en~~L~~el~~lr~~~~ 185 (226)
..+.+|.+++..++....+++.|.+.+|++..
T Consensus 39 ~~l~~le~e~~elkd~~lR~~AefeN~rKR~~ 70 (185)
T PRK14139 39 AELAEAEAKAAELQDSFLRAKAETENVRRRAQ 70 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666666677776776644
No 235
>PF07963 N_methyl: Prokaryotic N-terminal methylation motif; InterPro: IPR012902 This short motif directs methylation of the conserved phenylalanine residue. It is most often found at the N terminus of pilins and other proteins involved in secretion, see IPR001082 from INTERPRO, IPR010271 from INTERPRO, IPR003413 from INTERPRO and IPR011453 from INTERPRO. This model describes many (but not all) examples of the N-terminal region of bacterial proteins that resemble type IV pilins at their N terminus []. This domain contains a cleavage site G^FxxxE followed by a hydrophobic stretch. The new N-terminal residue produced after cleavage, usually Phe, is methylated. Separate domains of the prepilin peptidase appear to be responsible for cleavage and methylation. Proteins with this N-terminal region include type IV pilins and other components of pilus biogenesis, competence proteins, and type II secretion proteins. Typically several proteins in a single operon have this region.
Probab=26.36 E-value=90 Score=16.68 Aligned_cols=17 Identities=29% Similarity=0.655 Sum_probs=10.0
Q ss_pred CCchHHHH-HHHHHHHHH
Q 027214 190 RGFSLMFA-AFVGLIGIM 206 (226)
Q Consensus 190 ~g~s~~~v-~lv~lla~~ 206 (226)
.||++.=+ +.++++|++
T Consensus 1 ~GFTLiE~~v~l~i~~i~ 18 (20)
T PF07963_consen 1 KGFTLIELLVALAIIAIL 18 (20)
T ss_pred CceeHHHHHHHHHHHHHH
Confidence 37887643 555566654
No 236
>PRK09926 putative chaperone protein EcpD; Provisional
Probab=26.33 E-value=2.2e+02 Score=24.73 Aligned_cols=43 Identities=26% Similarity=0.423 Sum_probs=29.5
Q ss_pred eEEEEEcCCCCeEEEE-EEeCCC-CcEEEeCCeeeeCCCCeEEEEEE
Q 027214 29 CDLKVINNTEHHVAFK-VKTTSP-KKYFVRPNTGVVQPWDSCIIRVT 73 (226)
Q Consensus 29 ~~l~L~N~s~~~vaFK-VKTT~p-~~Y~VrP~~G~I~P~~s~~I~V~ 73 (226)
..|+++|+|..++.|- ++-... +.+.+ ..+.|.|+++..+.+-
T Consensus 173 ~~L~v~Nptpy~itl~~l~~~~~g~~~~~--~~~mi~P~s~~~~~l~ 217 (246)
T PRK09926 173 ASLRVTNPTPYYVSFSSGDLEAGGKRYPV--DSKMIAPFSDESMKVK 217 (246)
T ss_pred EEEEEECCCceEEEEEeeeeecCCeeccc--CcceECCCCcceEecC
Confidence 4599999999999875 432222 23333 3479999999888754
No 237
>TIGR03510 XapX XapX domain. This model describes an uncharacterized small, hydrophobic protein of about 50 amino acids, found between the xapB and xapR genes of the E. coli xanthosine utilization system, and homologous regions in other small proteins, such as the N-terminal region of DUF1427 (Pfam model pfam07235). We name this domain XapX, as it comprises the full length of the protein encoded between the genes for the well-studied XapB and XapR proteins.
Probab=26.28 E-value=97 Score=20.45 Aligned_cols=13 Identities=31% Similarity=0.491 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHhh
Q 027214 201 GLIGIMVGLILNL 213 (226)
Q Consensus 201 ~lla~~lG~~l~~ 213 (226)
.++|+++|.++++
T Consensus 6 l~~G~~vG~~~~~ 18 (49)
T TIGR03510 6 LGAGLLVGALYSL 18 (49)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444443
No 238
>PRK00442 tatA twin arginine translocase protein A; Provisional
Probab=26.22 E-value=66 Score=24.08 Aligned_cols=17 Identities=6% Similarity=0.036 Sum_probs=10.1
Q ss_pred CCchHHHHHHHHHHHHH
Q 027214 190 RGFSLMFAAFVGLIGIM 206 (226)
Q Consensus 190 ~g~s~~~v~lv~lla~~ 206 (226)
+++++..++++++++++
T Consensus 2 g~~g~~elliIlvIvll 18 (92)
T PRK00442 2 GIFDWKHWIVILVVVVL 18 (92)
T ss_pred CCccHHHHHHHHHHHHH
Confidence 45666666666555554
No 239
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=26.09 E-value=2.2e+02 Score=20.55 Aligned_cols=29 Identities=21% Similarity=0.142 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027214 154 SALQRLKDERDAAVRQTQLLQQDLDMLKR 182 (226)
Q Consensus 154 ~~i~~L~eE~~~~~~en~~L~~el~~lr~ 182 (226)
..+..|+.++-++.+-|.+|+++...++.
T Consensus 26 ~lv~sLR~KLiKYt~LnkkLq~~~~~~~~ 54 (76)
T PF11544_consen 26 ILVGSLRGKLIKYTELNKKLQDQLLNLQR 54 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34567777777788888888888777665
No 240
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=26.01 E-value=1.7e+02 Score=22.74 Aligned_cols=19 Identities=26% Similarity=0.303 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 027214 155 ALQRLKDERDAAVRQTQLL 173 (226)
Q Consensus 155 ~i~~L~eE~~~~~~en~~L 173 (226)
.|..+..|+..+++++.+|
T Consensus 24 ~lr~~E~E~~~l~~el~~l 42 (120)
T PF12325_consen 24 QLRRLEGELASLQEELARL 42 (120)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444433
No 241
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=25.89 E-value=76 Score=24.41 Aligned_cols=22 Identities=32% Similarity=0.416 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 027214 156 LQRLKDERDAAVRQTQLLQQDL 177 (226)
Q Consensus 156 i~~L~eE~~~~~~en~~L~~el 177 (226)
+..++++++.|.+|.++|+.++
T Consensus 85 ~~~l~~rvd~Lerqv~~Lenk~ 106 (108)
T COG3937 85 MDELTERVDALERQVADLENKL 106 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3566677777777777777664
No 242
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=25.72 E-value=1.8e+02 Score=20.34 Aligned_cols=23 Identities=26% Similarity=0.284 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 027214 158 RLKDERDAAVRQTQLLQQDLDML 180 (226)
Q Consensus 158 ~L~eE~~~~~~en~~L~~el~~l 180 (226)
+|.+|...++++...++.|-..|
T Consensus 18 ~L~~EN~~Lr~q~~~~~~ER~~L 40 (65)
T TIGR02449 18 RLKSENRLLRAQEKTWREERAQL 40 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444443333
No 243
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=25.72 E-value=2e+02 Score=20.16 Aligned_cols=29 Identities=17% Similarity=0.150 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027214 156 LQRLKDERDAAVRQTQLLQQDLDMLKRRG 184 (226)
Q Consensus 156 i~~L~eE~~~~~~en~~L~~el~~lr~~~ 184 (226)
+..+..++..+.++++++++|-+.|+...
T Consensus 26 ~~~~~~~~~~~~~~~~~l~~en~~L~~ei 54 (85)
T TIGR02209 26 TRQLNNELQKLQLEIDKLQKEWRDLQLEV 54 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666667777777777777776666543
No 244
>KOG1690 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.71 E-value=4.3e+02 Score=22.71 Aligned_cols=28 Identities=4% Similarity=0.103 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027214 154 SALQRLKDERDAAVRQTQLLQQDLDMLK 181 (226)
Q Consensus 154 ~~i~~L~eE~~~~~~en~~L~~el~~lr 181 (226)
+.++.|......|.++..+++.|-+..|
T Consensus 139 e~~k~l~~Rv~~L~~~~~~IrkEQ~~~R 166 (215)
T KOG1690|consen 139 ETDKLLEGRVRQLNSRLESIRKEQNLQR 166 (215)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555566666666666655444
No 245
>PRK02958 tatA twin arginine translocase protein A; Provisional
Probab=25.63 E-value=72 Score=22.81 Aligned_cols=16 Identities=25% Similarity=0.312 Sum_probs=9.7
Q ss_pred CchHHHHHHHHHHHHH
Q 027214 191 GFSLMFAAFVGLIGIM 206 (226)
Q Consensus 191 g~s~~~v~lv~lla~~ 206 (226)
|++...++++++++++
T Consensus 3 ~~g~~elliIl~Ivll 18 (73)
T PRK02958 3 SFSIWHWLIVLVIVVL 18 (73)
T ss_pred CccHHHHHHHHHHHHH
Confidence 5666666666665554
No 246
>COG1422 Predicted membrane protein [Function unknown]
Probab=25.51 E-value=1.9e+02 Score=24.70 Aligned_cols=26 Identities=15% Similarity=0.189 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHH-----HHHHHHHH
Q 027214 152 ANSALQRLKDERDAAVRQ-----TQLLQQDL 177 (226)
Q Consensus 152 ~~~~i~~L~eE~~~~~~e-----n~~L~~el 177 (226)
..+.++++++|..+++++ .++||++-
T Consensus 77 ~qk~m~efq~e~~eA~~~~d~~~lkkLq~~q 107 (201)
T COG1422 77 LQKMMKEFQKEFREAQESGDMKKLKKLQEKQ 107 (201)
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 344556677777666654 34566553
No 247
>COG2991 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.41 E-value=64 Score=23.13 Aligned_cols=16 Identities=19% Similarity=0.492 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHh
Q 027214 197 AAFVGLIGIMVGLILN 212 (226)
Q Consensus 197 v~lv~lla~~lG~~l~ 212 (226)
+++.++++.-|||+++
T Consensus 10 ~Fllvi~gMsiG~I~k 25 (77)
T COG2991 10 IFLLVIAGMSIGYIFK 25 (77)
T ss_pred HHHHHHHHHhHhhhee
Confidence 3555566666777764
No 248
>PF06522 B12D: NADH-ubiquinone reductase complex 1 MLRQ subunit; InterPro: IPR010530 The MLRQ subunit of mitochondrial NADH-ubiquinone reductase complex I is nuclear [] and is found in plants [], insects, fungi and higher metazoans []. It appears to act within the membrane and, in mammals, is highly expressed in muscle and neural tissue, indicative of a role in ATP generation [].
Probab=25.36 E-value=95 Score=21.85 Aligned_cols=25 Identities=24% Similarity=0.275 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHhhhccCCCC
Q 027214 196 FAAFVGLIGIMVGLILNLLLSSPPP 220 (226)
Q Consensus 196 ~v~lv~lla~~lG~~l~~~~~~~~~ 220 (226)
++++.+-+++..+|.++.++.+|.-
T Consensus 10 ~~~vg~a~~~a~~~~~r~l~~~PdV 34 (73)
T PF06522_consen 10 FVIVGVAVGGATFYLYRLLLTNPDV 34 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCe
Confidence 4445555667778888989888864
No 249
>smart00605 CW CW domain.
Probab=25.35 E-value=88 Score=22.64 Aligned_cols=22 Identities=36% Similarity=0.602 Sum_probs=14.6
Q ss_pred EEEEEcC-CCCeEEEEEEeCCCC
Q 027214 30 DLKVINN-TEHHVAFKVKTTSPK 51 (226)
Q Consensus 30 ~l~L~N~-s~~~vaFKVKTT~p~ 51 (226)
.++-.+. ++..||||+.++.+.
T Consensus 58 ~v~~~~~~~~~~VAfK~~~~~~~ 80 (94)
T smart00605 58 TVKKLSSSSGKKVAFKVSTDQPS 80 (94)
T ss_pred EEEEccCCCCcEEEEEEeCCCCC
Confidence 3444444 568899999876554
No 250
>PRK10265 chaperone-modulator protein CbpM; Provisional
Probab=25.11 E-value=1.8e+02 Score=21.70 Aligned_cols=26 Identities=27% Similarity=0.268 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027214 152 ANSALQRLKDERDAAVRQTQLLQQDL 177 (226)
Q Consensus 152 ~~~~i~~L~eE~~~~~~en~~L~~el 177 (226)
+.+.+-.|-+++..+++|++.|++.+
T Consensus 69 gialvl~LLd~i~~Lr~el~~L~~~l 94 (101)
T PRK10265 69 GIAVALTLLDEIAHLKQENRLLRQRL 94 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566667777777777766644
No 251
>PF03823 Neurokinin_B: Neurokinin B; InterPro: IPR003635 Tachykinins [, , ] are a group of biologically active peptides which excite neurons, evoke behavioral responses, are potent vasodilatators and contract (directly or indirectly) many smooth muscles. This family includes neurokinins, as well as many other peptides. Like other tachykinins, neurokinins are synthesized as larger protein precursors that are enzymatically converted to their mature forms.; GO: 0007217 tachykinin receptor signaling pathway
Probab=25.06 E-value=80 Score=21.50 Aligned_cols=21 Identities=5% Similarity=0.169 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHhhhcc
Q 027214 196 FAAFVGLIGIMVGLILNLLLS 216 (226)
Q Consensus 196 ~v~lv~lla~~lG~~l~~~~~ 216 (226)
..+++||+++-+|+-++..--
T Consensus 4 ~lLf~aiLalsla~s~gavCe 24 (59)
T PF03823_consen 4 TLLFAAILALSLARSFGAVCE 24 (59)
T ss_pred HHHHHHHHHHHHHHHhhhhhh
Confidence 357889999999999887643
No 252
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=25.05 E-value=2.6e+02 Score=23.99 Aligned_cols=15 Identities=13% Similarity=0.645 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHhhh
Q 027214 200 VGLIGIMVGLILNLL 214 (226)
Q Consensus 200 v~lla~~lG~~l~~~ 214 (226)
++.++|++|+++|++
T Consensus 182 ~~~~~~~~g~~~~~~ 196 (224)
T PTZ00443 182 ISSFAFLFGILMGLM 196 (224)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444444444444
No 253
>KOG1769 consensus Ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones]
Probab=25.00 E-value=92 Score=23.64 Aligned_cols=25 Identities=32% Similarity=0.445 Sum_probs=20.2
Q ss_pred eEeEEEEEcCCCCeEEEEEEeCCCC
Q 027214 27 GFCDLKVINNTEHHVAFKVKTTSPK 51 (226)
Q Consensus 27 ~~~~l~L~N~s~~~vaFKVKTT~p~ 51 (226)
..-+|++.+-.+.-+-||||.++|-
T Consensus 19 ~hi~LKV~gqd~~~~~Fkikr~t~L 43 (99)
T KOG1769|consen 19 EHINLKVKGQDGSVVVFKIKRHTPL 43 (99)
T ss_pred ceEEEEEecCCCCEEEEEeecCChH
Confidence 3557888886678889999999985
No 254
>PF15168 TRIQK: Triple QxxK/R motif-containing protein family
Probab=24.84 E-value=1.5e+02 Score=21.48 Aligned_cols=20 Identities=5% Similarity=0.260 Sum_probs=9.8
Q ss_pred CCchHHHHHHHHHHHHHHHH
Q 027214 190 RGFSLMFAAFVGLIGIMVGL 209 (226)
Q Consensus 190 ~g~s~~~v~lv~lla~~lG~ 209 (226)
.|.--...++++|+.+++++
T Consensus 46 ~gikev~l~l~ail~lL~a~ 65 (79)
T PF15168_consen 46 IGIKEVALVLAAILVLLLAF 65 (79)
T ss_pred hhhHHHHHHHHHHHHHHHHH
Confidence 44433333455555555554
No 255
>PF04340 DUF484: Protein of unknown function, DUF484; InterPro: IPR007435 This family consists of several proteins of uncharacterised function.; PDB: 3E98_B.
Probab=24.75 E-value=88 Score=26.52 Aligned_cols=30 Identities=13% Similarity=0.243 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027214 155 ALQRLKDERDAAVRQTQLLQQDLDMLKRRG 184 (226)
Q Consensus 155 ~i~~L~eE~~~~~~en~~L~~el~~lr~~~ 184 (226)
.|+-.......++++|+.|++++..|-..+
T Consensus 41 avSL~erQ~~~LR~~~~~L~~~l~~Li~~A 70 (225)
T PF04340_consen 41 AVSLVERQLERLRERNRQLEEQLEELIENA 70 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556677788888888888887776543
No 256
>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins. Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.
Probab=24.73 E-value=1.8e+02 Score=22.39 Aligned_cols=29 Identities=21% Similarity=0.368 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027214 154 SALQRLKDERDAAVRQTQLLQQDLDMLKR 182 (226)
Q Consensus 154 ~~i~~L~eE~~~~~~en~~L~~el~~lr~ 182 (226)
..+.+|+.+...|.+||+-|+-+++.|..
T Consensus 72 ~e~~rlkkk~~~LeEENNlLklKievLLD 100 (108)
T cd07429 72 REVLRLKKKNQQLEEENNLLKLKIEVLLD 100 (108)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777777888888877766655543
No 257
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=24.53 E-value=1.3e+02 Score=29.06 Aligned_cols=28 Identities=21% Similarity=0.262 Sum_probs=19.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027214 150 PDANSALQRLKDERDAAVRQTQLLQQDL 177 (226)
Q Consensus 150 ~e~~~~i~~L~eE~~~~~~en~~L~~el 177 (226)
.+.++.+..|..+...+++||++|++..
T Consensus 69 k~~r~~~~~l~~~N~~l~~eN~~L~~r~ 96 (472)
T TIGR03752 69 KELRKRLAKLISENEALKAENERLQKRE 96 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4566677777777777888887777643
No 258
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=24.31 E-value=1.2e+02 Score=24.92 Aligned_cols=28 Identities=14% Similarity=0.414 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027214 157 QRLKDERDAAVRQTQLLQQDLDMLKRRG 184 (226)
Q Consensus 157 ~~L~eE~~~~~~en~~L~~el~~lr~~~ 184 (226)
.++.+|+.++++|..+.+.|++.|+++.
T Consensus 157 ~~~~~ei~~lk~el~~~~~~~~~LkkQ~ 184 (192)
T PF05529_consen 157 KKLSEEIEKLKKELEKKEKEIEALKKQS 184 (192)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666666666666666666666654
No 259
>PF10031 DUF2273: Small integral membrane protein (DUF2273); InterPro: IPR018730 Members of this family of hypothetical bacterial proteins have no known function.
Probab=24.30 E-value=98 Score=20.44 Aligned_cols=15 Identities=27% Similarity=0.512 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHH
Q 027214 196 FAAFVGLIGIMVGLI 210 (226)
Q Consensus 196 ~v~lv~lla~~lG~~ 210 (226)
++++.+.+|..+|+.
T Consensus 34 ~i~~~~~iG~~iG~~ 48 (51)
T PF10031_consen 34 FILLFAAIGYYIGKY 48 (51)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444443
No 260
>PF14775 NYD-SP28_assoc: Sperm tail C-terminal domain
Probab=24.14 E-value=1.4e+02 Score=20.27 Aligned_cols=18 Identities=22% Similarity=0.344 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 027214 158 RLKDERDAAVRQTQLLQQ 175 (226)
Q Consensus 158 ~L~eE~~~~~~en~~L~~ 175 (226)
.|..|..++.+||..|+.
T Consensus 37 ~l~~e~~~L~~qN~eLr~ 54 (60)
T PF14775_consen 37 ALIQEKESLEQQNEELRS 54 (60)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444555555555555554
No 261
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=24.11 E-value=74 Score=26.86 Aligned_cols=24 Identities=50% Similarity=0.526 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccC
Q 027214 194 LMFAAFVGLIGIMVGLILNLLLSS 217 (226)
Q Consensus 194 ~~~v~lv~lla~~lG~~l~~~~~~ 217 (226)
+.=+++.++.++++|+++|.++.+
T Consensus 139 ~~rA~~~~~~~L~~G~~lGs~l~~ 162 (194)
T PF11833_consen 139 LGRAFLWTLGGLVVGLILGSLLAS 162 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 555667777777777777776643
No 262
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=23.86 E-value=2.5e+02 Score=19.29 Aligned_cols=15 Identities=27% Similarity=0.627 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHH
Q 027214 168 RQTQLLQQDLDMLKR 182 (226)
Q Consensus 168 ~en~~L~~el~~lr~ 182 (226)
.+|..|.+++..|++
T Consensus 39 ~rn~eL~~ei~~L~~ 53 (61)
T PF08826_consen 39 KRNRELEQEIERLKK 53 (61)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444443
No 263
>PRK14147 heat shock protein GrpE; Provisional
Probab=23.85 E-value=2.5e+02 Score=23.17 Aligned_cols=34 Identities=15% Similarity=0.178 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 027214 152 ANSALQRLKDERDAAVRQTQLLQQDLDMLKRRGQ 185 (226)
Q Consensus 152 ~~~~i~~L~eE~~~~~~en~~L~~el~~lr~~~~ 185 (226)
....+..|++|+..++....+++.|.+.+|++..
T Consensus 23 l~~~l~~l~~e~~elkd~~lR~~Ad~eN~rkR~~ 56 (172)
T PRK14147 23 LKAEVESLRSEIALVKADALRERADLENQRKRIA 56 (172)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667777777777777777777777776544
No 264
>PHA00024 IX minor coat protein
Probab=23.74 E-value=1e+02 Score=18.63 Aligned_cols=16 Identities=13% Similarity=-0.149 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHh
Q 027214 197 AAFVGLIGIMVGLILN 212 (226)
Q Consensus 197 v~lv~lla~~lG~~l~ 212 (226)
++.-.+-|+++||.++
T Consensus 4 ~l~~ffgA~ilG~~l~ 19 (33)
T PHA00024 4 YLGYFFGAYILGWALF 19 (33)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4445566777777665
No 265
>TIGR00327 secE_euk_arch protein translocase SEC61 complex gamma subunit, archaeal and eukaryotic. This model describes archaeal SEC61-like and eukaryotic SEC61 but not bacterial secE proteins, for which a Pfam pfam00584 (SecE) has been created.
Probab=23.54 E-value=1.6e+02 Score=20.24 Aligned_cols=12 Identities=17% Similarity=0.498 Sum_probs=8.5
Q ss_pred HHHHHHHhhhcc
Q 027214 205 IMVGLILNLLLS 216 (226)
Q Consensus 205 ~~lG~~l~~~~~ 216 (226)
-++||++++++.
T Consensus 43 G~IGf~Ikli~~ 54 (61)
T TIGR00327 43 GIIGYIIKIIAI 54 (61)
T ss_pred HHHHHHHHHHHH
Confidence 357888888753
No 266
>PRK01622 OxaA-like protein precursor; Validated
Probab=23.49 E-value=2.5e+02 Score=24.57 Aligned_cols=14 Identities=21% Similarity=0.325 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHhcc
Q 027214 172 LLQQDLDMLKRRGQ 185 (226)
Q Consensus 172 ~L~~el~~lr~~~~ 185 (226)
++++|+..+.++..
T Consensus 118 ~~~~e~~~Lyk~~g 131 (256)
T PRK01622 118 EYQKEMMELYKSGN 131 (256)
T ss_pred HHHHHHHHHHHHcC
Confidence 47777777766643
No 267
>PF15018 InaF-motif: TRP-interacting helix
Probab=23.04 E-value=1.6e+02 Score=18.34 Aligned_cols=25 Identities=12% Similarity=0.242 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCC
Q 027214 194 LMFAAFVGLIGIMVGLILNLLLSSP 218 (226)
Q Consensus 194 ~~~v~lv~lla~~lG~~l~~~~~~~ 218 (226)
+..++.|.++|++|.-+.-+++.+.
T Consensus 11 ~~Yl~~VSl~Ai~LsiYY~f~W~p~ 35 (38)
T PF15018_consen 11 VAYLFSVSLAAIVLSIYYIFFWDPD 35 (38)
T ss_pred HHHHHHHHHHHHHHHHHHheeeCCC
Confidence 4567889999999998888887543
No 268
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=22.88 E-value=2.3e+02 Score=18.49 Aligned_cols=26 Identities=27% Similarity=0.313 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027214 158 RLKDERDAAVRQTQLLQQDLDMLKRR 183 (226)
Q Consensus 158 ~L~eE~~~~~~en~~L~~el~~lr~~ 183 (226)
.|......+..|.+.||..+...++.
T Consensus 3 aLrqQv~aL~~qv~~Lq~~fs~yKKa 28 (46)
T PF09006_consen 3 ALRQQVEALQGQVQRLQAAFSQYKKA 28 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666666666666666555543
No 269
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=22.81 E-value=2.1e+02 Score=22.96 Aligned_cols=28 Identities=21% Similarity=0.443 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027214 154 SALQRLKDERDAAVRQTQLLQQDLDMLK 181 (226)
Q Consensus 154 ~~i~~L~eE~~~~~~en~~L~~el~~lr 181 (226)
+.+..|.+++..+..+.+.|+.|++.+|
T Consensus 52 ~eie~L~~el~~lt~el~~L~~EL~~l~ 79 (140)
T PF10473_consen 52 AEIETLEEELEELTSELNQLELELDTLR 79 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555555444
No 270
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=22.79 E-value=1.4e+02 Score=29.28 Aligned_cols=31 Identities=16% Similarity=0.260 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027214 154 SALQRLKDERDAAVRQTQLLQQDLDMLKRRG 184 (226)
Q Consensus 154 ~~i~~L~eE~~~~~~en~~L~~el~~lr~~~ 184 (226)
..+..+.+|+..+++||.+|..++..+|+..
T Consensus 162 rr~~~le~e~~~Lk~en~rl~~~l~~~r~~l 192 (546)
T KOG0977|consen 162 RRIKALEDELKRLKAENSRLREELARARKQL 192 (546)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 3457888888999999999999988888643
No 271
>PRK10722 hypothetical protein; Provisional
Probab=22.77 E-value=2e+02 Score=25.43 Aligned_cols=22 Identities=36% Similarity=0.383 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 027214 160 KDERDAAVRQTQLLQQDLDMLK 181 (226)
Q Consensus 160 ~eE~~~~~~en~~L~~el~~lr 181 (226)
.++++++++|+.+|+.+++...
T Consensus 175 D~qlD~lrqq~~~Lq~~L~~t~ 196 (247)
T PRK10722 175 DSELDALRQQQQRLQYQLELTT 196 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 6677778888888888776543
No 272
>TIGR02736 cbb3_Q_epsi cytochrome c oxidase, cbb3-type, CcoQ subunit, epsilon-Proteobacterial. Members of this protein family are restricted to the epsilon branch of the Proteobacteria. All members are found in operons containing the other three structural subunits of the cbb3 type of cytochrome c oxidase. These small proteins show remote sequence similarity to the CcoQ subunit in other cytochrome c oxidase systems, so this family is assumed to represent the epsilonproteobacterial variant of CcoQ.
Probab=22.36 E-value=1.1e+02 Score=20.73 Aligned_cols=21 Identities=29% Similarity=0.276 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHhhhcc
Q 027214 196 FAAFVGLIGIMVGLILNLLLS 216 (226)
Q Consensus 196 ~v~lv~lla~~lG~~l~~~~~ 216 (226)
+++.++|..++-||++.+--|
T Consensus 5 f~~ti~lvv~LYgY~yhLYrs 25 (56)
T TIGR02736 5 FAFTLLLVIFLYAYIYHLYRS 25 (56)
T ss_pred HHHHHHHHHHHHHHHHHhhhh
Confidence 456666777788999886433
No 273
>PF00631 G-gamma: GGL domain; InterPro: IPR015898 This entry represents the G protein gamma subunit and the GGL (G protein gamma-like) domain, which are related in sequence and are comprised of an extended alpha-helical polypeptide. The G protein gamma subunit forms a stable dimer with the beta subunit, but it does not make any contact with the alpha subunit, which contacts the opposite face of the beta subunit. The GGL domain is found in several RGS (regulators of G protein signaling) proteins. GGL domains can interact with beta subunits to form novel dimers that prevent gamma subunit binding, and may prevent heterotrimer formation by inhibiting alpha subunit binding. The interaction between G protein beta-5 neuro-specific isoforms and RGS GGL domains may represent a general mode of binding between beta-propeller proteins and their partners [].; GO: 0004871 signal transducer activity, 0007186 G-protein coupled receptor protein signaling pathway, 0005834 heterotrimeric G-protein complex; PDB: 3PSC_G 3SN6_G 1OMW_G 2BCJ_G 1GG2_G 3PVW_G 3PVU_G 3AH8_G 3CIK_G 1GP2_G ....
Probab=22.32 E-value=58 Score=22.41 Aligned_cols=18 Identities=33% Similarity=0.551 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 027214 162 ERDAAVRQTQLLQQDLDM 179 (226)
Q Consensus 162 E~~~~~~en~~L~~el~~ 179 (226)
+..++++|++.|++|+.+
T Consensus 3 ~~~~l~~ei~~L~~el~~ 20 (68)
T PF00631_consen 3 EKDQLKREIEQLRQELER 20 (68)
T ss_dssp HHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHcc
Confidence 455677777888887765
No 274
>PRK14155 heat shock protein GrpE; Provisional
Probab=22.29 E-value=2e+02 Score=24.64 Aligned_cols=34 Identities=26% Similarity=0.278 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 027214 152 ANSALQRLKDERDAAVRQTQLLQQDLDMLKRRGQ 185 (226)
Q Consensus 152 ~~~~i~~L~eE~~~~~~en~~L~~el~~lr~~~~ 185 (226)
....+.+|++|+..++.+..+++.|.+.+|++..
T Consensus 18 l~~~l~~le~e~~elkd~~lR~~AefeN~RKR~~ 51 (208)
T PRK14155 18 AAQEIEALKAEVAALKDQALRYAAEAENTKRRAE 51 (208)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445677777887777777777777777776644
No 275
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=22.23 E-value=1.1e+02 Score=26.56 Aligned_cols=25 Identities=28% Similarity=0.375 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 027214 157 QRLKDERDAAVRQTQLLQQDLDMLK 181 (226)
Q Consensus 157 ~~L~eE~~~~~~en~~L~~el~~lr 181 (226)
++++++...++.|.+.+++|.++|-
T Consensus 175 e~~~~~~~al~Kq~e~~~~EydrLl 199 (216)
T KOG1962|consen 175 EKAQKKVDALKKQSEGLQDEYDRLL 199 (216)
T ss_pred HHHHHHHHHHHHHHHHcccHHHHHH
Confidence 3444444555555555555555543
No 276
>PF11808 DUF3329: Domain of unknown function (DUF3329); InterPro: IPR021766 This family of proteins are functionally uncharacterised. This family is only found in bacteria. ; GO: 0004673 protein histidine kinase activity
Probab=22.20 E-value=1.1e+02 Score=22.37 Aligned_cols=13 Identities=23% Similarity=0.498 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHH
Q 027214 198 AFVGLIGIMVGLI 210 (226)
Q Consensus 198 ~lv~lla~~lG~~ 210 (226)
++.+++|.++|++
T Consensus 17 l~~~lvG~~~g~~ 29 (90)
T PF11808_consen 17 LAAALVGWLFGHL 29 (90)
T ss_pred HHHHHHHHHHhHH
Confidence 3344444444444
No 277
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=22.17 E-value=4.9e+02 Score=24.54 Aligned_cols=20 Identities=25% Similarity=0.218 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q 027214 195 MFAAFVGLIGIMVGLILNLL 214 (226)
Q Consensus 195 ~~v~lv~lla~~lG~~l~~~ 214 (226)
+++++.+++|+++|..+-++
T Consensus 415 ~~l~~g~~~Gl~lg~~~~~l 434 (498)
T TIGR03007 415 LLMLAGLLGGLGAGIGLAFL 434 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555554443
No 278
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=22.15 E-value=2.7e+02 Score=19.43 Aligned_cols=25 Identities=16% Similarity=0.336 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 027214 157 QRLKDERDAAVRQTQLLQQDLDMLK 181 (226)
Q Consensus 157 ~~L~eE~~~~~~en~~L~~el~~lr 181 (226)
...-++..++++|+..|++|++..|
T Consensus 43 ~~a~~e~~~Lk~E~e~L~~el~~~r 67 (69)
T PF14197_consen 43 GDAYEENNKLKEENEALRKELEELR 67 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444445555555555555555443
No 279
>PF09527 ATPase_gene1: Putative F0F1-ATPase subunit (ATPase_gene1)
Probab=22.04 E-value=1.4e+02 Score=19.39 Aligned_cols=21 Identities=24% Similarity=0.371 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHhhhccC
Q 027214 197 AAFVGLIGIMVGLILNLLLSS 217 (226)
Q Consensus 197 v~lv~lla~~lG~~l~~~~~~ 217 (226)
++...+++.++||++-..|.+
T Consensus 10 ~~~~i~~g~~~G~~lD~~~~t 30 (55)
T PF09527_consen 10 MAAPILVGFFLGYWLDKWFGT 30 (55)
T ss_pred HHHHHHHHHHHHHHHHHHcCC
Confidence 344555677777777777765
No 280
>PRK15246 fimbrial assembly chaperone StbE; Provisional
Probab=22.02 E-value=2.4e+02 Score=24.39 Aligned_cols=39 Identities=13% Similarity=0.273 Sum_probs=27.8
Q ss_pred EEEEEcCCCCeEEEEEEeCCCCcEEEeCCeeeeCCCCeEEEEE
Q 027214 30 DLKVINNTEHHVAFKVKTTSPKKYFVRPNTGVVQPWDSCIIRV 72 (226)
Q Consensus 30 ~l~L~N~s~~~vaFKVKTT~p~~Y~VrP~~G~I~P~~s~~I~V 72 (226)
.|++.|+|..+|.|---.-..+. + ...+|.|+++..+.+
T Consensus 154 ~l~v~NpTPyyvtl~~l~~~~~~--~--~~~mi~P~s~~~~~~ 192 (233)
T PRK15246 154 TIRIVNPTSWYMSLTLTMDNKKS--I--GDIMVAPKTALDVPL 192 (233)
T ss_pred EEEEECCCCcEEEEEeEEECCcc--c--CcceECCCCccEEEc
Confidence 49999999999988632222222 2 246899999988875
No 281
>COG4317 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.86 E-value=81 Score=23.21 Aligned_cols=16 Identities=50% Similarity=0.825 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 027214 196 FAAFVGLIGIMVGLIL 211 (226)
Q Consensus 196 ~v~lv~lla~~lG~~l 211 (226)
.+.+|+|+|+++||=+
T Consensus 30 ~iAlvGllGilvGeq~ 45 (93)
T COG4317 30 AIALVGLLGILVGEQI 45 (93)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3459999999999843
No 282
>PF11027 DUF2615: Protein of unknown function (DUF2615); InterPro: IPR020309 This entry represents a group of uncharacterised protein from the Metazoa, including CD034 (or C4orf34) and YQF4 (or C34C12.4).
Probab=21.82 E-value=1.3e+02 Score=23.02 Aligned_cols=23 Identities=17% Similarity=0.241 Sum_probs=13.7
Q ss_pred CCchHHHHHHHHHHHHHHHHHHh
Q 027214 190 RGFSLMFAAFVGLIGIMVGLILN 212 (226)
Q Consensus 190 ~g~s~~~v~lv~lla~~lG~~l~ 212 (226)
+|.+.++++++.++..++-|+++
T Consensus 51 ~~~~~~~~~~~w~~~A~~ly~~R 73 (103)
T PF11027_consen 51 GGNSMFMMMMLWMVLAMALYLLR 73 (103)
T ss_pred CCccHHHHHHHHHHHHHHHHHcC
Confidence 45566666555555555666665
No 283
>PF03168 LEA_2: Late embryogenesis abundant protein; InterPro: IPR004864 Different types of LEA proteins are expressed at different stages of late embryogenesis in higher plant seed embryos and under conditions of dehydration stress [, ]. The function of these proteins is unknown. ; PDB: 3BUT_A 1XO8_A 1YYC_A.
Probab=21.79 E-value=2.9e+02 Score=19.27 Aligned_cols=46 Identities=13% Similarity=0.061 Sum_probs=26.7
Q ss_pred EEEEEcCCCC-----eEEEEEEeCCCCcE-EEeCCeeeeCCCCeEEEEEEec
Q 027214 30 DLKVINNTEH-----HVAFKVKTTSPKKY-FVRPNTGVVQPWDSCIIRVTLQ 75 (226)
Q Consensus 30 ~l~L~N~s~~-----~vaFKVKTT~p~~Y-~VrP~~G~I~P~~s~~I~V~l~ 75 (226)
+|+++|+... .+.|.|.--.-..- ...+..+.++|+++..+.+.+.
T Consensus 1 ~l~v~NPN~~~i~~~~~~~~v~~~g~~v~~~~~~~~~~i~~~~~~~v~~~v~ 52 (101)
T PF03168_consen 1 TLSVRNPNSFGIRYDSIEYDVYYNGQRVGTGGSLPPFTIPARSSTTVPVPVS 52 (101)
T ss_dssp EEEEEESSSS-EEEEEEEEEEEESSSEEEEEEECE-EEESSSCEEEEEEEEE
T ss_pred CEEEECCCceeEEEeCEEEEEEECCEEEECccccCCeEECCCCcEEEEEEEE
Confidence 3667777653 23334443333333 4567777888888887777544
No 284
>PRK01614 tatE twin arginine translocase protein A; Validated
Probab=21.72 E-value=95 Score=22.88 Aligned_cols=16 Identities=25% Similarity=0.509 Sum_probs=10.1
Q ss_pred CchHHHHHHHHHHHHH
Q 027214 191 GFSLMFAAFVGLIGIM 206 (226)
Q Consensus 191 g~s~~~v~lv~lla~~ 206 (226)
|+++..+++|+++.++
T Consensus 3 GlG~~ELLIIlvIvLL 18 (85)
T PRK01614 3 GLSITKLLVVGILIVL 18 (85)
T ss_pred CccHHHHHHHHHHHHH
Confidence 5666666666666554
No 285
>PRK01203 prefoldin subunit alpha; Provisional
Probab=21.72 E-value=1.6e+02 Score=23.38 Aligned_cols=25 Identities=8% Similarity=0.166 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 027214 158 RLKDERDAAVRQTQLLQQDLDMLKR 182 (226)
Q Consensus 158 ~L~eE~~~~~~en~~L~~el~~lr~ 182 (226)
.+.+|++.+.+|.+.|++++..||.
T Consensus 4 ~~~~~~~~~~~q~e~l~~ql~~L~~ 28 (130)
T PRK01203 4 DVEAQLNYIESLISSVDSQIDSLNK 28 (130)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666655553
No 286
>PF12097 DUF3573: Protein of unknown function (DUF3573); InterPro: IPR021956 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 372 to 530 amino acids in length.
Probab=21.64 E-value=1.4e+02 Score=27.72 Aligned_cols=26 Identities=23% Similarity=0.308 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027214 158 RLKDERDAAVRQTQLLQQDLDMLKRR 183 (226)
Q Consensus 158 ~L~eE~~~~~~en~~L~~el~~lr~~ 183 (226)
..++++.+|++|+++||.|+..|++.
T Consensus 39 ~~~~~i~~Lq~QI~~Lq~ei~~l~~~ 64 (383)
T PF12097_consen 39 NDQQEISELQKQIQQLQAEINQLEEQ 64 (383)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44566667777777777777777665
No 287
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=21.51 E-value=2.2e+02 Score=23.30 Aligned_cols=13 Identities=38% Similarity=0.496 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHhh
Q 027214 201 GLIGIMVGLILNL 213 (226)
Q Consensus 201 ~lla~~lG~~l~~ 213 (226)
+++..+++.++++
T Consensus 160 g~i~~~~a~~la~ 172 (177)
T PF07798_consen 160 GVIFGCVALVLAI 172 (177)
T ss_pred HHHHHHHHHHHHH
Confidence 3333344444443
No 288
>TIGR02186 alph_Pro_TM conserved hypothetical protein. This family consists of predicted transmembrane proteins of about 270 amino acids. Members are found, so far, only among the Alphaproteobacteria and only once in each genome.
Probab=21.51 E-value=77 Score=28.16 Aligned_cols=25 Identities=12% Similarity=0.315 Sum_probs=22.0
Q ss_pred chHHHHHHHHHHHHHHHHHHhhhcc
Q 027214 192 FSLMFAAFVGLIGIMVGLILNLLLS 216 (226)
Q Consensus 192 ~s~~~v~lv~lla~~lG~~l~~~~~ 216 (226)
.++++=++.+++|++.||.-+.+|.
T Consensus 235 ~~~lYGl~av~lAi~aGw~As~iFr 259 (261)
T TIGR02186 235 NPLIYGLLAVALAVVTGWGASILFR 259 (261)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHhc
Confidence 4578889999999999999999885
No 289
>PHA02657 hypothetical protein; Provisional
Probab=21.46 E-value=1.2e+02 Score=22.44 Aligned_cols=21 Identities=10% Similarity=0.178 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q 027214 194 LMFAAFVGLIGIMVGLILNLL 214 (226)
Q Consensus 194 ~~~v~lv~lla~~lG~~l~~~ 214 (226)
..+++.+++++++|=|+.+..
T Consensus 31 tvfv~vI~il~flLLYLvkWS 51 (95)
T PHA02657 31 TIFIFVVCILIYLLIYLVDWS 51 (95)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 346677888888888887754
No 290
>PF11446 DUF2897: Protein of unknown function (DUF2897); InterPro: IPR021550 This is a bacterial family of uncharacterised proteins.
Probab=21.46 E-value=1e+02 Score=20.75 Aligned_cols=23 Identities=26% Similarity=0.466 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHhhhccCC
Q 027214 196 FAAFVGLIGIMVGLILNLLLSSP 218 (226)
Q Consensus 196 ~v~lv~lla~~lG~~l~~~~~~~ 218 (226)
.++++..+|+++|=++-+-.|+.
T Consensus 6 wlIIviVlgvIigNia~LK~sAk 28 (55)
T PF11446_consen 6 WLIIVIVLGVIIGNIAALKYSAK 28 (55)
T ss_pred hHHHHHHHHHHHhHHHHHHHhcc
Confidence 46778888999999888777765
No 291
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=21.37 E-value=1.8e+02 Score=25.35 Aligned_cols=21 Identities=24% Similarity=0.119 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHhhhcc
Q 027214 196 FAAFVGLIGIMVGLILNLLLS 216 (226)
Q Consensus 196 ~v~lv~lla~~lG~~l~~~~~ 216 (226)
.+++++++.+++|.++++++.
T Consensus 30 ~ml~a~l~~~~v~v~ig~l~~ 50 (224)
T PF13829_consen 30 LMLGAFLGPIAVFVLIGLLFG 50 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHc
Confidence 334444444444444444443
No 292
>COG4836 Predicted membrane protein [Function unknown]
Probab=21.27 E-value=1.4e+02 Score=21.29 Aligned_cols=23 Identities=13% Similarity=0.223 Sum_probs=16.2
Q ss_pred CCchHHHHHHHHHHHHHHHHHHh
Q 027214 190 RGFSLMFAAFVGLIGIMVGLILN 212 (226)
Q Consensus 190 ~g~s~~~v~lv~lla~~lG~~l~ 212 (226)
.|.....-++..+++++|||.+.
T Consensus 37 k~~~tQa~llmI~vtI~lg~~vs 59 (77)
T COG4836 37 KGKVTQARLLMIFVTIALGYAVS 59 (77)
T ss_pred cCchhHHHHHHHHHHHHHHHHHH
Confidence 34556667778888888888654
No 293
>PRK14872 rod shape-determining protein MreC; Provisional
Probab=21.22 E-value=1.4e+02 Score=27.56 Aligned_cols=24 Identities=21% Similarity=0.155 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 027214 156 LQRLKDERDAAVRQTQLLQQDLDM 179 (226)
Q Consensus 156 i~~L~eE~~~~~~en~~L~~el~~ 179 (226)
...|.+|..+|++||.+|++++..
T Consensus 59 y~~L~~EN~~Lk~Ena~L~~~l~~ 82 (337)
T PRK14872 59 ALVLETENFLLKERIALLEERLKS 82 (337)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777777777777777666544
No 294
>KOG2678 consensus Predicted membrane protein [Function unknown]
Probab=21.05 E-value=3.2e+02 Score=23.95 Aligned_cols=6 Identities=0% Similarity=0.274 Sum_probs=2.4
Q ss_pred HHHHHh
Q 027214 178 DMLKRR 183 (226)
Q Consensus 178 ~~lr~~ 183 (226)
.++++-
T Consensus 204 erve~y 209 (244)
T KOG2678|consen 204 ERVEKY 209 (244)
T ss_pred HHHHHH
Confidence 344433
No 295
>PF07233 DUF1425: Protein of unknown function (DUF1425); InterPro: IPR010824 This family consists of several hypothetical bacterial proteins of around 125 residues in length. Several members of this family are described as putative lipoproteins and are often known as YcfL. The function of this family is unknown.; PDB: 3O0L_A.
Probab=21.03 E-value=3.4e+02 Score=19.78 Aligned_cols=48 Identities=6% Similarity=0.032 Sum_probs=29.0
Q ss_pred CceeEeEEEEEcCCCCe--EEEEEEeCCCCcEEEeCC-----eeeeCCCCeEEEE
Q 027214 24 EKQGFCDLKVINNTEHH--VAFKVKTTSPKKYFVRPN-----TGVVQPWDSCIIR 71 (226)
Q Consensus 24 ~~~~~~~l~L~N~s~~~--vaFKVKTT~p~~Y~VrP~-----~G~I~P~~s~~I~ 71 (226)
++.....+.|+|.++.+ +.||+-==..+-+-|.|. .=.|.|+++..|.
T Consensus 23 ~g~~~~~~~l~N~~~~~~~l~Yrf~WyD~~G~~v~~~~~~w~~~~l~~~~~~~l~ 77 (94)
T PF07233_consen 23 NGLLRAQATLSNKSSKPLTLQYRFYWYDKQGLEVDPEQSPWQSLTLPGGQTVTLS 77 (94)
T ss_dssp CCEEEEEEEEEE-SSS-EEEEEEEEEE-TTS-EE--TT---EEEEE-TT-EEEEE
T ss_pred CCeEEEEEEEEECCCCcEEEEEEEEEECCCCCCcCCCCCCCEEEEEcCCCEEEEE
Confidence 66788999999998655 888887777777777776 3455555555443
No 296
>PRK14141 heat shock protein GrpE; Provisional
Probab=21.01 E-value=2.5e+02 Score=24.07 Aligned_cols=33 Identities=24% Similarity=0.352 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 027214 153 NSALQRLKDERDAAVRQTQLLQQDLDMLKRRGQ 185 (226)
Q Consensus 153 ~~~i~~L~eE~~~~~~en~~L~~el~~lr~~~~ 185 (226)
...|..|++|+..++....+++.|.+.+|++..
T Consensus 37 ~~~i~~le~e~~elkd~~lR~~Ae~eN~RKR~~ 69 (209)
T PRK14141 37 PDPLEALKAENAELKDRMLRLAAEMENLRKRTQ 69 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346677888888777777777778777776644
No 297
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=21.00 E-value=3.8e+02 Score=23.41 Aligned_cols=16 Identities=13% Similarity=0.214 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 027214 161 DERDAAVRQTQLLQQD 176 (226)
Q Consensus 161 eE~~~~~~en~~L~~e 176 (226)
.|..+++++|.+.-+|
T Consensus 120 ~ei~k~r~e~~~ml~e 135 (230)
T PF03904_consen 120 NEIKKVREENKSMLQE 135 (230)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344445555444443
No 298
>PF13373 DUF2407_C: DUF2407 C-terminal domain
Probab=20.92 E-value=71 Score=25.61 Aligned_cols=20 Identities=20% Similarity=0.268 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q 027214 195 MFAAFVGLIGIMVGLILNLL 214 (226)
Q Consensus 195 ~~v~lv~lla~~lG~~l~~~ 214 (226)
.-..--.|.|+++|+|++++
T Consensus 86 ~~~~~dlL~G~liGff~g~~ 105 (140)
T PF13373_consen 86 SGHNDDLLWGLLIGFFFGLF 105 (140)
T ss_pred cchHHHHHHHHHHHHHHHHH
Confidence 34566677778888877754
No 299
>PF04678 DUF607: Protein of unknown function, DUF607; InterPro: IPR006769 This entry represents the C-terminal domain of coiled-coil domain containing protein 109.
Probab=20.89 E-value=2e+02 Score=23.68 Aligned_cols=20 Identities=20% Similarity=0.267 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 027214 155 ALQRLKDERDAAVRQTQLLQ 174 (226)
Q Consensus 155 ~i~~L~eE~~~~~~en~~L~ 174 (226)
.+..+++|+..+.++...+.
T Consensus 65 ~l~~~~~el~~le~~k~~id 84 (180)
T PF04678_consen 65 RLEELRQELAPLEKIKQEID 84 (180)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444443333333
No 300
>PRK14011 prefoldin subunit alpha; Provisional
Probab=20.89 E-value=1.9e+02 Score=23.26 Aligned_cols=30 Identities=23% Similarity=0.162 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027214 154 SALQRLKDERDAAVRQTQLLQQDLDMLKRR 183 (226)
Q Consensus 154 ~~i~~L~eE~~~~~~en~~L~~el~~lr~~ 183 (226)
..+..+-.+++.+.+|.+.|++++..|+..
T Consensus 3 ~elq~~~~~l~~~~~qie~L~~si~~L~~a 32 (144)
T PRK14011 3 EELQNQFMALEVYNQQVQKLQEELSSIDMM 32 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566667777778888888887777653
No 301
>PF13974 YebO: YebO-like protein
Probab=20.86 E-value=72 Score=23.24 Aligned_cols=17 Identities=29% Similarity=0.575 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHh
Q 027214 196 FAAFVGLIGIMVGLILN 212 (226)
Q Consensus 196 ~v~lv~lla~~lG~~l~ 212 (226)
++++++|+|+++-||+.
T Consensus 3 ~~~~~~lv~livWFFVn 19 (80)
T PF13974_consen 3 VSVLVLLVGLIVWFFVN 19 (80)
T ss_pred ehHHHHHHHHHHHHHHH
Confidence 45677777777777654
No 302
>PF06657 Cep57_MT_bd: Centrosome microtubule-binding domain of Cep57; InterPro: IPR010597 This entry is thought to represent a centrosomal protein of 57 kDa (Cep57-related protein). It is required for spindle microtubule attachment to both kinetochores and centrosomes and functions to tether minus-ends of spindle microtubules to centrosomes. It may act by forming ring-like structures around microtubules, or by serving as a cross-linker or scaffold at the attachment site [].
Probab=20.84 E-value=3.1e+02 Score=19.58 Aligned_cols=29 Identities=24% Similarity=0.284 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027214 152 ANSALQRLKDERDAAVRQTQLLQQDLDML 180 (226)
Q Consensus 152 ~~~~i~~L~eE~~~~~~en~~L~~el~~l 180 (226)
....|..|++|...++-+-+.|++++..+
T Consensus 15 Ls~vl~~LqDE~~hm~~e~~~L~~~~~~~ 43 (79)
T PF06657_consen 15 LSEVLKALQDEFGHMKMEHQELQDEYKQM 43 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45567888999988888888887776543
No 303
>PRK03625 tatE twin arginine translocase protein E; Validated
Probab=20.77 E-value=1e+02 Score=21.62 Aligned_cols=16 Identities=13% Similarity=0.150 Sum_probs=9.6
Q ss_pred CchHHHHHHHHHHHHH
Q 027214 191 GFSLMFAAFVGLIGIM 206 (226)
Q Consensus 191 g~s~~~v~lv~lla~~ 206 (226)
|+++..++++++++++
T Consensus 3 ~ig~~elliIlvI~ll 18 (67)
T PRK03625 3 EISITKLLVVAALVVL 18 (67)
T ss_pred CCcHHHHHHHHHHHHH
Confidence 4556666666666655
No 304
>PF08041 PetM: PetM family of cytochrome b6f complex subunit 7; InterPro: IPR012595 This family consists of the PetM family of cytochrome b6f complex subunit IV. The cytochrome b6f complex consists of 7 subunits and contains 2 beta haem's and 1 chlorophyll alpha per cytochrome f. It is highly active in transferring electrons from decylplastoquinol to oxidised plastocyanin [].; GO: 0009512 cytochrome b6f complex; PDB: 2ZT9_F 1Q90_M 2E76_F 2E75_F 2E74_F 2D2C_S 1VF5_S.
Probab=20.72 E-value=1.6e+02 Score=17.59 Aligned_cols=15 Identities=27% Similarity=0.552 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHH
Q 027214 197 AAFVGLIGIMVGLIL 211 (226)
Q Consensus 197 v~lv~lla~~lG~~l 211 (226)
++.+.++|+.+||.+
T Consensus 10 ~~~lvlvGla~Gf~L 24 (31)
T PF08041_consen 10 CFGLVLVGLALGFVL 24 (31)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 355566777777765
No 305
>KOG3498 consensus Preprotein translocase, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.68 E-value=3e+02 Score=19.27 Aligned_cols=20 Identities=20% Similarity=0.401 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhc
Q 027214 195 MFAAFVGLIGIMVGLILNLLL 215 (226)
Q Consensus 195 ~~v~lv~lla~~lG~~l~~~~ 215 (226)
..++-++++| +|||+++++.
T Consensus 39 ~~aiGf~~mG-~iGf~vKLIh 58 (67)
T KOG3498|consen 39 ATAIGFVIMG-FIGFFVKLIH 58 (67)
T ss_pred HHHHHHHHHH-HHHHHHHHhe
Confidence 3445555555 5799999875
No 306
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=20.56 E-value=3.6e+02 Score=24.16 Aligned_cols=26 Identities=23% Similarity=0.295 Sum_probs=12.4
Q ss_pred CCchHHHHHHHHHH--HHHHHHHHhhhc
Q 027214 190 RGFSLMFAAFVGLI--GIMVGLILNLLL 215 (226)
Q Consensus 190 ~g~s~~~v~lv~ll--a~~lG~~l~~~~ 215 (226)
.+|.+.|-.+.-.. .+|||.+-+.|+
T Consensus 198 Ea~~~~f~Al~E~aEK~~Ila~~gk~Ll 225 (271)
T PF13805_consen 198 EAYSLKFDALIERAEKQAILAEYGKRLL 225 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666665554421 234444444443
No 307
>PRK04598 tatA twin arginine translocase protein A; Provisional
Probab=20.52 E-value=1e+02 Score=22.48 Aligned_cols=16 Identities=19% Similarity=0.410 Sum_probs=8.3
Q ss_pred CchHHHHHHHHHHHHH
Q 027214 191 GFSLMFAAFVGLIGIM 206 (226)
Q Consensus 191 g~s~~~v~lv~lla~~ 206 (226)
|+++..+++++++.++
T Consensus 3 glg~~elliIlvivll 18 (81)
T PRK04598 3 GISIWQLLIIAVIVVL 18 (81)
T ss_pred CccHHHHHHHHHHHHH
Confidence 4555555555444443
No 308
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=20.50 E-value=5.8e+02 Score=25.63 Aligned_cols=21 Identities=24% Similarity=0.558 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q 027214 194 LMFAAFVGLIGIMVGLILNLL 214 (226)
Q Consensus 194 ~~~v~lv~lla~~lG~~l~~~ 214 (226)
.+.+++.+++|+++|..+-++
T Consensus 431 ~~~l~~~~~~gl~lg~~~a~l 451 (754)
T TIGR01005 431 GPIVGLAAVLGLLLGAIFALL 451 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344455555666666555544
No 309
>PRK02944 OxaA-like protein precursor; Validated
Probab=20.48 E-value=5e+02 Score=22.66 Aligned_cols=16 Identities=31% Similarity=0.331 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHhcc
Q 027214 170 TQLLQQDLDMLKRRGQ 185 (226)
Q Consensus 170 n~~L~~el~~lr~~~~ 185 (226)
.+++++|...|.++..
T Consensus 110 ~~k~~~e~~~Lyk~~g 125 (255)
T PRK02944 110 QQKLQQEMMQLFQKNG 125 (255)
T ss_pred HHHHHHHHHHHHHHcC
Confidence 4567778777776644
No 310
>KOG3156 consensus Uncharacterized membrane protein [Function unknown]
Probab=20.41 E-value=2.2e+02 Score=24.67 Aligned_cols=22 Identities=27% Similarity=0.327 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 027214 161 DERDAAVRQTQLLQQDLDMLKR 182 (226)
Q Consensus 161 eE~~~~~~en~~L~~el~~lr~ 182 (226)
.|-..++.||++|+.|++++|.
T Consensus 116 sEF~~lr~e~EklkndlEk~ks 137 (220)
T KOG3156|consen 116 SEFANLRAENEKLKNDLEKLKS 137 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3556678888999988887764
No 311
>KOG4010 consensus Coiled-coil protein TPD52 [General function prediction only]
Probab=20.39 E-value=1.5e+02 Score=25.17 Aligned_cols=18 Identities=22% Similarity=0.241 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 027214 158 RLKDERDAAVRQTQLLQQ 175 (226)
Q Consensus 158 ~L~eE~~~~~~en~~L~~ 175 (226)
+|+.|+.++.+|+.-|+|
T Consensus 48 elr~EL~kvEeEI~TLrq 65 (208)
T KOG4010|consen 48 ELRTELAKVEEEIVTLRQ 65 (208)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444444444444444444
No 312
>PRK09918 putative fimbrial chaperone protein; Provisional
Probab=20.37 E-value=2.1e+02 Score=24.58 Aligned_cols=42 Identities=21% Similarity=0.131 Sum_probs=29.1
Q ss_pred EEEEEcCCCCeEEEE-E-EeC-CCCcEEEeCCeeeeCCCCeEEEEEE
Q 027214 30 DLKVINNTEHHVAFK-V-KTT-SPKKYFVRPNTGVVQPWDSCIIRVT 73 (226)
Q Consensus 30 ~l~L~N~s~~~vaFK-V-KTT-~p~~Y~VrP~~G~I~P~~s~~I~V~ 73 (226)
.|+++|+|..++.|- + +.. ..+.+.+ ..|.|.|+++..+.+-
T Consensus 156 ~l~v~N~~p~~i~l~~l~~~~~~g~~~~~--~~~~v~P~s~~~~~l~ 200 (230)
T PRK09918 156 NLVVSNPSPYVVRLGQQVILLPSGKVVAL--PKPYILPGESLTVAIT 200 (230)
T ss_pred EEEEECCCCEEEEEeccEEEccCCceecc--CCceECCCceEEEEcc
Confidence 599999999998775 2 222 2333333 3489999999988753
No 313
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=20.37 E-value=2.3e+02 Score=24.07 Aligned_cols=24 Identities=25% Similarity=0.195 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 027214 158 RLKDERDAAVRQTQLLQQDLDMLK 181 (226)
Q Consensus 158 ~L~eE~~~~~~en~~L~~el~~lr 181 (226)
..-.|+..+++.|++|++|-..||
T Consensus 52 ~hl~EIR~LKe~NqkLqedNqELR 75 (195)
T PF10226_consen 52 QHLNEIRGLKEVNQKLQEDNQELR 75 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333455556666666666654444
No 314
>COG3354 FlaG Putative archaeal flagellar protein G [Cell motility and secretion]
Probab=20.35 E-value=3.1e+02 Score=22.35 Aligned_cols=56 Identities=11% Similarity=0.193 Sum_probs=40.1
Q ss_pred ecCeeEEeeecCceeEeEEEEEcCCCCeEEEE-----------EEeCCCCcEEEeCCeee-eCCCCeEE
Q 027214 13 HPEELKFIFELEKQGFCDLKVINNTEHHVAFK-----------VKTTSPKKYFVRPNTGV-VQPWDSCI 69 (226)
Q Consensus 13 ~P~eL~F~~~~~~~~~~~l~L~N~s~~~vaFK-----------VKTT~p~~Y~VrP~~G~-I~P~~s~~ 69 (226)
+|..+...+. +..-+..+-++|+++..++|- +-|-+.-.|..-+..|+ |.||+--.
T Consensus 57 dPg~i~~~~~-~g~~t~t~yiKNtG~~~~~fd~~sitVliDG~iv~~a~~~~~~~~gs~i~l~PG~Vg~ 124 (154)
T COG3354 57 DPGQIPYVGT-DGPYTYTFYIKNTGSDSIAFDNTSITVLIDGNIVTPAYVTFTSVNGSSIRLSPGQVGR 124 (154)
T ss_pred CCCCCccccC-CCceEEEEEEecCCCcccccCCCeEEEEEcCcEeccceEEEEecCCCeeEecCCceee
Confidence 4665544431 234577899999999999885 45555667788888888 88998763
No 315
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=20.33 E-value=1.1e+02 Score=28.39 Aligned_cols=23 Identities=17% Similarity=0.281 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 027214 155 ALQRLKDERDAAVRQTQLLQQDL 177 (226)
Q Consensus 155 ~i~~L~eE~~~~~~en~~L~~el 177 (226)
+=.+|+.|.+.|+.+..+|+.|.
T Consensus 40 EN~~LKkEN~~Lk~eVerLE~e~ 62 (420)
T PF07407_consen 40 ENHSLKKENNDLKIEVERLENEM 62 (420)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHh
Confidence 33567777777777777666554
No 316
>PF02096 60KD_IMP: 60Kd inner membrane protein; InterPro: IPR001708 This family of proteins is required for the insertion of integral membrane proteins into cellular membranes. Many of these integral membrane proteins are associated with respiratory chain complexes, for example a large number of members of this family play an essential role in the activity and assembly of cytochrome c oxidase. Stage III sporulation protein J (SP3J) is a probable lipoprotein, rich in basic and hydrophobic amino acids. Mutations in the protein abolish the transcription of prespore-specific genes transcribed by the sigma G form of RNA polymerase []. SP3J could be involved in a signal transduction pathway coupling gene expression in the prespore to events in the mother cell, or it may be necessary for essential metabolic interactions between the two cells []. The protein shows a high degree of similarity to Bacillus subtilis YQJG, to yeast OXA1 and also to bacterial 60 kDa inner-membrane proteins [, , , ]. ; GO: 0051205 protein insertion into membrane, 0016021 integral to membrane
Probab=20.32 E-value=3.6e+02 Score=22.02 Aligned_cols=16 Identities=25% Similarity=0.391 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHhcc
Q 027214 170 TQLLQQDLDMLKRRGQ 185 (226)
Q Consensus 170 n~~L~~el~~lr~~~~ 185 (226)
-+++++|...++++..
T Consensus 50 ~~~~~~~~~~l~k~~~ 65 (198)
T PF02096_consen 50 QQKMQQEMQKLYKKHG 65 (198)
T ss_pred HHHHHHHHHHHHHHcC
Confidence 3457777777776643
No 317
>PF05552 TM_helix: Conserved TM helix; InterPro: IPR008910 This alignment represents a conserved transmembrane helix as well as some flanking sequence. It is often found in association with a Mechanosensitive (MS) channel IPR006685 from INTERPRO.; PDB: 2VV5_F 2OAU_E.
Probab=20.32 E-value=1e+02 Score=19.97 Aligned_cols=18 Identities=17% Similarity=0.248 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 027214 195 MFAAFVGLIGIMVGLILN 212 (226)
Q Consensus 195 ~~v~lv~lla~~lG~~l~ 212 (226)
..++++.++|.+++-+++
T Consensus 19 v~AilIl~vG~~va~~v~ 36 (53)
T PF05552_consen 19 VGAILILIVGWWVAKFVR 36 (53)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444443
No 318
>PRK01833 tatA twin arginine translocase protein A; Provisional
Probab=20.17 E-value=1.1e+02 Score=21.98 Aligned_cols=16 Identities=19% Similarity=0.243 Sum_probs=8.8
Q ss_pred CchHHHHHHHHHHHHH
Q 027214 191 GFSLMFAAFVGLIGIM 206 (226)
Q Consensus 191 g~s~~~v~lv~lla~~ 206 (226)
|+++..++++++++++
T Consensus 3 g~g~~elliIl~i~ll 18 (74)
T PRK01833 3 GISIWQLLIIVAIIVL 18 (74)
T ss_pred CccHHHHHHHHHHHHH
Confidence 5566665555555544
No 319
>PRK01470 tatA twin arginine translocase protein A; Provisional
Probab=20.15 E-value=1.1e+02 Score=20.30 Aligned_cols=16 Identities=31% Similarity=0.306 Sum_probs=9.0
Q ss_pred CchHHHHHHHHHHHHH
Q 027214 191 GFSLMFAAFVGLIGIM 206 (226)
Q Consensus 191 g~s~~~v~lv~lla~~ 206 (226)
|+++..++++++++++
T Consensus 2 gig~~elliI~vi~ll 17 (51)
T PRK01470 2 GMSFSHLLIVLLIIFV 17 (51)
T ss_pred CCCHHHHHHHHHHHHH
Confidence 4455556666555554
No 320
>PRK14161 heat shock protein GrpE; Provisional
Probab=20.04 E-value=2.4e+02 Score=23.51 Aligned_cols=31 Identities=16% Similarity=0.201 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 027214 155 ALQRLKDERDAAVRQTQLLQQDLDMLKRRGQ 185 (226)
Q Consensus 155 ~i~~L~eE~~~~~~en~~L~~el~~lr~~~~ 185 (226)
.+..|++++..++....+++.|.+.+|++..
T Consensus 27 ei~~l~~e~~elkd~~lR~~AefeN~rkR~~ 57 (178)
T PRK14161 27 EITALKAEIEELKDKLIRTTAEIDNTRKRLE 57 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666766666666677777776666544
No 321
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=20.03 E-value=6.8e+02 Score=23.06 Aligned_cols=22 Identities=18% Similarity=0.440 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhc
Q 027214 194 LMFAAFVGLIGIMVGLILNLLL 215 (226)
Q Consensus 194 ~~~v~lv~lla~~lG~~l~~~~ 215 (226)
...+++.+++|+++|..+-+++
T Consensus 397 ~~~l~~~~~~Gl~lg~~~~~l~ 418 (444)
T TIGR03017 397 LLNLVLSIFLGMLLGIGFAFLA 418 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555666677776665554
Done!