Query 027214
Match_columns 226
No_of_seqs 201 out of 719
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 10:36:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027214.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027214hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2cri_A Vesicle-associated memb 100.0 7.1E-36 2.4E-40 240.4 16.8 127 6-136 11-138 (147)
2 1z9l_A Vesicle-associated memb 100.0 2.2E-35 7.6E-40 232.1 15.7 123 3-129 4-127 (128)
3 1wic_A Hypothetical protein ri 100.0 4.7E-36 1.6E-40 242.8 9.5 124 6-134 15-141 (152)
4 1msp_A MSP, major sperm protei 100.0 5.5E-33 1.9E-37 218.2 16.7 122 4-129 3-125 (126)
5 1row_A SSP-19, MSP-domain prot 100.0 1.3E-28 4.6E-33 188.7 12.0 104 10-127 3-106 (109)
6 1m1s_A WR4; structural genomic 100.0 4.6E-28 1.6E-32 187.3 14.9 107 7-127 8-114 (116)
7 2ys4_A Hydrocephalus-inducing 98.5 7E-07 2.4E-11 68.4 8.8 83 5-94 21-104 (122)
8 2e6j_A Hydin protein; PAPD, st 98.2 8.2E-06 2.8E-10 60.8 9.2 74 4-77 4-81 (112)
9 3qbt_B Inositol polyphosphate 98.1 2.1E-05 7.2E-10 61.9 10.9 71 6-76 23-100 (140)
10 3qis_A Inositol polyphosphate 97.6 0.00031 1.1E-08 63.3 10.9 72 6-77 26-104 (366)
11 2qsv_A Uncharacterized protein 96.5 0.013 4.3E-07 48.8 9.1 67 10-77 3-70 (220)
12 2qsv_A Uncharacterized protein 96.3 0.022 7.6E-07 47.3 9.4 69 7-77 117-186 (220)
13 3q48_A Chaperone CUPB2; IG fol 94.4 0.67 2.3E-05 39.6 12.5 111 8-132 28-148 (257)
14 2xg5_A PAPD, chaperone protein 93.0 1.3 4.6E-05 36.7 11.6 109 10-132 2-119 (218)
15 2co7_B SAFB chaperone, putativ 92.9 0.73 2.5E-05 38.4 9.9 86 8-99 12-102 (221)
16 1klf_A FIMC chaperone, chapero 92.0 1.9 6.4E-05 35.4 11.1 112 10-133 2-120 (205)
17 4djm_A DRAB; chaperone, PILI; 91.7 1.2 4E-05 37.7 9.7 86 8-99 22-112 (239)
18 1l4i_A SFAE protein; periplasm 90.4 2.6 8.7E-05 34.6 10.4 112 10-133 2-120 (206)
19 4ay0_A Chaperone protein CAF1M 89.3 7.4 0.00025 32.2 12.5 112 8-133 12-130 (218)
20 3gfu_C Chaperone protein FAEE; 88.4 3.9 0.00013 34.1 10.2 84 10-99 2-92 (224)
21 1yew_A Particulate methane mon 87.8 3.4 0.00012 37.0 9.8 67 9-77 249-337 (382)
22 2r39_A FIXG-related protein; s 86.9 4 0.00014 30.1 8.5 51 27-77 33-84 (118)
23 3rfr_A PMOB; membrane, oxidore 86.7 3.4 0.00012 37.5 9.2 68 7-77 281-369 (419)
24 3c3g_A Alpha/beta peptide with 86.6 1.6 5.3E-05 25.5 4.6 28 156-183 2-29 (33)
25 3m48_A General control protein 86.5 1.1 3.7E-05 26.3 3.9 28 157-184 3-30 (33)
26 3c3f_A Alpha/beta peptide with 85.2 2 6.8E-05 25.2 4.6 28 156-183 3-30 (34)
27 1uo4_A General control protein 84.6 1.6 5.6E-05 25.6 4.1 29 156-184 3-31 (34)
28 2oxj_A Hybrid alpha/beta pepti 84.0 2.2 7.5E-05 25.0 4.4 29 156-184 3-31 (34)
29 2bni_A General control protein 82.2 2.3 8E-05 25.0 4.1 29 156-184 3-31 (34)
30 1kd8_B GABH BLL, GCN4 acid bas 81.6 3.3 0.00011 24.6 4.6 29 156-184 3-31 (36)
31 2wq1_A General control protein 80.6 3.9 0.00013 23.8 4.6 28 156-183 2-29 (33)
32 1kd8_A GABH AIV, GCN4 acid bas 80.0 3 0.0001 24.8 4.1 28 156-183 3-30 (36)
33 2akf_A Coronin-1A; coiled coil 78.7 2.6 9E-05 23.9 3.4 28 156-183 1-28 (32)
34 2hy6_A General control protein 77.9 3.9 0.00013 23.9 4.1 28 156-183 3-30 (34)
35 2r2v_A GCN4 leucine zipper; co 76.7 5.9 0.0002 23.2 4.6 28 156-183 3-30 (34)
36 2wuj_A Septum site-determining 76.4 3.4 0.00012 27.0 4.1 33 150-182 23-55 (57)
37 2dgc_A Protein (GCN4); basic d 74.3 6.3 0.00022 26.2 5.0 30 155-184 31-60 (63)
38 1nlw_A MAD protein, MAX dimeri 73.6 6.9 0.00023 27.3 5.3 33 151-183 44-76 (80)
39 1scf_A Stem cell factor; steel 73.5 0.69 2.3E-05 39.3 0.0 25 191-215 212-236 (273)
40 1dh3_A Transcription factor CR 73.4 6.6 0.00022 25.4 4.8 29 155-183 23-51 (55)
41 4dzn_A Coiled-coil peptide CC- 73.3 9.7 0.00033 21.5 4.7 25 157-181 5-29 (33)
42 1hjb_A Ccaat/enhancer binding 72.4 7.6 0.00026 27.7 5.3 29 156-184 45-73 (87)
43 1nkp_B MAX protein, MYC proto- 72.0 7.9 0.00027 26.8 5.4 34 151-184 44-77 (83)
44 2yy0_A C-MYC-binding protein; 71.2 8.7 0.0003 24.7 5.0 29 155-183 20-48 (53)
45 1a93_B MAX protein, coiled coi 70.3 8.1 0.00028 22.7 4.1 26 152-177 5-30 (34)
46 1fmh_A General control protein 68.7 12 0.0004 21.2 4.4 27 156-182 3-29 (33)
47 2wg5_A General control protein 68.4 5.2 0.00018 29.5 3.9 28 156-183 9-36 (109)
48 1t2k_D Cyclic-AMP-dependent tr 67.6 13 0.00044 24.3 5.4 29 155-183 23-51 (61)
49 3s9g_A Protein hexim1; cyclin 67.6 9.2 0.00031 27.9 4.9 30 155-184 66-95 (104)
50 1gu4_A CAAT/enhancer binding p 67.2 11 0.00037 26.3 5.1 27 157-183 46-72 (78)
51 2wt7_A Proto-oncogene protein 66.6 12 0.00042 24.6 5.1 29 155-183 24-52 (63)
52 1ci6_A Transcription factor AT 64.5 16 0.00053 24.2 5.3 27 156-182 25-51 (63)
53 1jnm_A Proto-oncogene C-JUN; B 63.5 15 0.00052 24.0 5.1 29 155-183 23-51 (62)
54 1t2k_D Cyclic-AMP-dependent tr 62.7 16 0.00055 23.8 5.1 32 152-183 27-58 (61)
55 3ra3_B P2F; coiled coil domain 62.6 9.9 0.00034 20.7 3.2 16 165-180 4-19 (28)
56 3m91_A Proteasome-associated A 60.6 13 0.00044 23.8 4.1 23 158-180 27-49 (51)
57 2jee_A YIIU; FTSZ, septum, coi 59.6 19 0.00064 25.3 5.2 28 151-178 17-44 (81)
58 1jnm_A Proto-oncogene C-JUN; B 58.7 10 0.00036 24.8 3.6 33 151-183 26-58 (62)
59 3w03_C DNA repair protein XRCC 58.7 14 0.00047 30.0 5.0 26 156-181 154-179 (184)
60 1t6f_A Geminin; coiled-coil, c 58.5 14 0.00047 21.9 3.6 20 155-174 15-34 (37)
61 3v86_A De novo design helix; c 58.5 16 0.00056 19.7 3.6 23 158-180 4-26 (27)
62 2wt7_B Transcription factor MA 58.4 21 0.00071 25.6 5.4 27 157-183 58-84 (90)
63 3hn9_A Lamin-B1; structural ge 58.0 15 0.00052 27.5 4.9 42 29-71 25-72 (123)
64 2wt7_A Proto-oncogene protein 57.5 25 0.00085 23.1 5.4 32 152-183 28-59 (63)
65 3idu_A Uncharacterized protein 57.4 36 0.0012 25.6 6.9 68 24-100 32-100 (127)
66 1am9_A Srebp-1A, protein (ster 57.4 21 0.0007 24.8 5.2 31 151-181 47-77 (82)
67 1nkp_A C-MYC, MYC proto-oncoge 55.6 17 0.0006 25.6 4.6 31 151-181 49-79 (88)
68 2ww9_B Protein transport prote 55.5 13 0.00043 26.1 3.7 11 205-215 62-72 (80)
69 1ci6_A Transcription factor AT 55.4 25 0.00085 23.2 5.1 31 152-182 28-58 (63)
70 1go4_E MAD1 (mitotic arrest de 54.8 24 0.00082 25.7 5.2 27 155-181 13-39 (100)
71 1rh5_B Preprotein translocase 53.9 9.3 0.00032 26.4 2.8 15 202-216 46-60 (74)
72 3kin_B Kinesin heavy chain; mo 52.6 21 0.00071 26.5 4.8 31 151-181 86-116 (117)
73 2xzz_A Protein-glutamine gamma 52.3 60 0.0021 23.3 7.2 53 24-77 19-74 (102)
74 3mq7_A Bone marrow stromal ant 52.1 24 0.00082 26.5 4.9 29 156-184 73-101 (121)
75 3hd7_B Syntaxin-1A; membrane p 51.9 65 0.0022 23.3 7.5 22 194-215 87-108 (109)
76 1nkp_A C-MYC, MYC proto-oncoge 51.1 32 0.0011 24.2 5.4 27 155-181 60-86 (88)
77 2l5g_B Putative uncharacterize 48.8 44 0.0015 20.4 5.1 34 151-184 6-39 (42)
78 2jee_A YIIU; FTSZ, septum, coi 48.8 37 0.0013 23.8 5.2 20 163-182 50-69 (81)
79 2yy0_A C-MYC-binding protein; 47.8 23 0.0008 22.7 3.8 27 152-178 24-50 (53)
80 1hlo_A Protein (transcription 47.7 20 0.00068 24.6 3.7 23 153-175 56-78 (80)
81 3vta_A Cucumisin; subtilisin-l 47.6 77 0.0026 29.8 9.0 51 26-76 538-591 (621)
82 3m9b_A Proteasome-associated A 46.9 17 0.00057 30.9 3.8 27 157-183 71-97 (251)
83 3mp7_B Preprotein translocase 46.1 18 0.0006 24.0 3.1 33 183-215 21-55 (61)
84 3hd7_A Vesicle-associated memb 46.0 74 0.0025 22.3 6.8 17 165-181 37-53 (91)
85 1nkp_B MAX protein, MYC proto- 45.7 21 0.00073 24.5 3.7 24 160-183 46-69 (83)
86 2huh_A Putative DNA mismatch r 45.5 41 0.0014 26.2 5.6 66 28-100 29-94 (147)
87 1nlw_A MAD protein, MAX dimeri 45.4 25 0.00087 24.3 4.0 29 155-183 41-69 (80)
88 1gu4_A CAAT/enhancer binding p 45.3 31 0.0011 23.9 4.4 28 157-184 39-66 (78)
89 3jt0_A Lamin-B1; structural ge 45.2 31 0.0011 26.6 4.9 42 29-71 38-85 (144)
90 3nmd_A CGMP dependent protein 44.8 29 0.001 23.8 4.1 25 157-181 43-67 (72)
91 1hjb_A Ccaat/enhancer binding 44.5 32 0.0011 24.3 4.5 28 157-184 39-66 (87)
92 1uii_A Geminin; human, DNA rep 43.2 49 0.0017 23.2 5.2 26 157-182 49-74 (83)
93 1go4_E MAD1 (mitotic arrest de 41.2 17 0.00059 26.5 2.6 30 150-179 15-44 (100)
94 3e38_A Two-domain protein cont 40.7 58 0.002 28.5 6.5 65 29-100 270-334 (343)
95 1a93_A Coiled coil, LZ, MYC pr 40.5 52 0.0018 19.2 4.1 26 155-180 8-33 (34)
96 3ra3_A P1C; coiled coil domain 39.7 34 0.0012 18.5 3.0 22 160-181 6-27 (28)
97 3s4r_A Vimentin; alpha-helix, 39.1 62 0.0021 22.9 5.4 27 156-182 65-91 (93)
98 1yyc_A LEA protein, putative l 39.0 1E+02 0.0034 24.4 7.2 51 26-76 63-119 (174)
99 3zy7_A AP-1 complex subunit ga 38.9 61 0.0021 23.9 5.6 68 27-98 31-104 (122)
100 1zxa_A CGMP-dependent protein 38.9 38 0.0013 22.8 3.9 30 155-184 26-55 (67)
101 1gd2_E Transcription factor PA 37.9 46 0.0016 22.5 4.3 26 155-180 30-55 (70)
102 1p9i_A Cortexillin I/GCN4 hybr 37.4 48 0.0016 18.4 3.4 23 158-180 3-25 (31)
103 2w6b_A RHO guanine nucleotide 37.0 66 0.0023 20.8 4.6 25 154-178 10-34 (56)
104 3q4f_C DNA repair protein XRCC 37.0 33 0.0011 27.6 3.9 20 157-176 164-183 (186)
105 3hnw_A Uncharacterized protein 36.5 39 0.0013 25.8 4.2 15 167-181 109-123 (138)
106 2w6a_A ARF GTPase-activating p 36.5 77 0.0026 20.8 4.9 21 161-181 27-47 (63)
107 1gd2_E Transcription factor PA 36.4 31 0.0011 23.4 3.2 30 153-182 35-64 (70)
108 2zxx_A Geminin; coiled-coil, c 36.1 50 0.0017 23.0 4.2 18 158-175 45-62 (79)
109 3efg_A Protein SLYX homolog; x 35.8 68 0.0023 22.0 5.0 31 155-185 29-59 (78)
110 1dip_A Delta-sleep-inducing pe 35.6 67 0.0023 22.1 4.7 31 155-185 16-46 (78)
111 2jwa_A Receptor tyrosine-prote 35.5 30 0.001 21.4 2.7 16 197-212 21-36 (44)
112 2ls4_A High affinity copper up 41.5 8 0.00027 21.4 0.0 16 197-212 5-20 (26)
113 3trt_A Vimentin; cytoskeleton, 34.1 74 0.0025 21.2 4.9 25 157-181 52-76 (77)
114 3twe_A Alpha4H; unknown functi 33.3 59 0.002 17.4 3.3 18 166-183 6-23 (27)
115 2wt7_B Transcription factor MA 33.3 75 0.0026 22.6 4.9 28 156-183 50-77 (90)
116 3bo0_B Preprotein translocase 33.1 99 0.0034 20.0 5.6 21 195-215 37-57 (65)
117 3a2a_A Voltage-gated hydrogen 33.0 72 0.0024 20.7 4.3 27 158-184 22-48 (58)
118 1deb_A APC protein, adenomatou 33.0 58 0.002 20.7 3.8 16 162-177 11-26 (54)
119 2ks1_B Epidermal growth factor 33.0 34 0.0012 21.1 2.7 16 197-212 21-36 (44)
120 2dgc_A Protein (GCN4); basic d 32.4 48 0.0016 21.8 3.5 22 155-176 38-59 (63)
121 1use_A VAsp, vasodilator-stimu 31.8 67 0.0023 19.9 3.8 22 156-177 9-31 (45)
122 2zvf_A Alanyl-tRNA synthetase; 31.2 91 0.0031 23.8 5.7 31 151-181 29-59 (171)
123 1wm3_A Ubiquitin-like protein 30.8 38 0.0013 22.3 2.9 21 30-50 3-23 (72)
124 2v66_B Nuclear distribution pr 30.6 93 0.0032 23.0 5.2 27 151-177 32-58 (111)
125 1dip_A Delta-sleep-inducing pe 30.5 73 0.0025 21.9 4.2 27 150-176 18-44 (78)
126 4hci_A Cupredoxin 1; structura 30.2 1.1E+02 0.0039 20.9 5.6 49 13-73 26-74 (100)
127 1jcd_A Major outer membrane li 30.2 1.1E+02 0.0036 19.5 4.8 23 158-180 8-30 (52)
128 1ifr_A Lamin A/C; immunoglobul 29.7 1.1E+02 0.0037 22.7 5.6 42 29-71 19-67 (121)
129 3w03_C DNA repair protein XRCC 29.3 86 0.0029 25.2 5.2 31 154-184 145-175 (184)
130 2l2t_A Receptor tyrosine-prote 28.8 45 0.0015 20.6 2.7 15 198-212 21-35 (44)
131 1rtm_1 Mannose-binding protein 28.6 61 0.0021 23.9 4.1 25 159-183 2-26 (149)
132 2oa5_A Hypothetical protein BQ 28.5 34 0.0012 25.3 2.5 22 156-177 10-31 (110)
133 2xdj_A Uncharacterized protein 28.4 1.2E+02 0.0042 21.0 5.3 26 156-181 29-54 (83)
134 3i6s_A Subtilisin-like proteas 28.2 2.7E+02 0.0092 26.4 9.4 51 27-77 560-613 (649)
135 2io0_B Small ubiquitin-related 27.5 53 0.0018 23.0 3.3 22 29-50 6-27 (91)
136 4gio_A Putative lipoprotein; u 27.5 1.4E+02 0.0046 21.6 5.7 50 24-73 35-90 (107)
137 2w6a_A ARF GTPase-activating p 27.4 81 0.0028 20.7 3.9 24 158-181 38-61 (63)
138 1c7s_A Beta-N-acetylhexosamini 27.3 99 0.0034 30.7 6.3 32 43-74 76-109 (858)
139 3viq_B Mating-type switching p 27.3 93 0.0032 21.9 4.5 26 158-183 5-30 (85)
140 3ndz_E Endoglucanase D; cellot 27.2 1.4E+02 0.0049 21.4 5.8 52 24-75 14-86 (107)
141 1gmj_A ATPase inhibitor; coile 26.8 97 0.0033 21.8 4.5 24 160-183 50-73 (84)
142 1hlo_A Protein (transcription 26.1 1.1E+02 0.0036 20.7 4.6 29 155-183 51-79 (80)
143 2q6q_A Spindle POLE BODY compo 25.9 1.4E+02 0.0049 20.1 5.0 31 153-183 23-53 (74)
144 4emc_A Monopolin complex subun 25.8 1.2E+02 0.0039 24.6 5.4 27 157-183 30-56 (190)
145 1xo8_A AT1G01470; structural g 25.2 1.3E+02 0.0045 22.9 5.5 50 26-75 40-95 (151)
146 3mtu_E Head morphogenesis prot 24.9 1.1E+02 0.0038 21.1 4.4 26 154-179 44-69 (77)
147 2l5g_A GPS2 protein, G protein 24.7 1.2E+02 0.004 18.1 5.2 21 156-176 10-30 (38)
148 3viq_A SWI5-dependent recombin 24.3 98 0.0034 23.1 4.5 26 158-183 4-29 (122)
149 3q48_A Chaperone CUPB2; IG fol 24.3 83 0.0028 26.4 4.5 43 28-72 172-216 (257)
150 2iaa_C Azurin; quinoprotein, t 23.7 61 0.0021 24.2 3.2 62 10-74 12-98 (128)
151 1iby_A Nitrosocyanin; RED copp 23.7 1.9E+02 0.0064 20.1 7.0 50 13-74 36-85 (112)
152 4emc_A Monopolin complex subun 23.7 1.1E+02 0.0037 24.8 4.8 32 154-185 20-51 (190)
153 2z5i_A TM, general control pro 23.4 1.4E+02 0.0048 18.8 4.4 25 155-179 20-44 (52)
154 1klf_A FIMC chaperone, chapero 23.2 1.3E+02 0.0044 24.1 5.4 39 30-72 139-177 (205)
155 2lll_A Lamin-B2; immunoglobuli 23.0 1.3E+02 0.0045 22.9 5.1 42 29-71 34-82 (139)
156 1uii_A Geminin; human, DNA rep 22.8 1.9E+02 0.0066 20.2 5.4 20 164-183 49-68 (83)
157 4ani_A Protein GRPE; chaperone 22.7 1.3E+02 0.0045 24.6 5.3 33 153-185 65-97 (213)
158 2io1_B Small ubiquitin-related 22.7 74 0.0025 22.3 3.3 23 28-50 7-29 (94)
159 3vmx_A Voltage-gated hydrogen 22.3 1.5E+02 0.0052 18.5 5.3 27 158-184 15-41 (48)
160 1qhq_A Protein (auracyanin); e 22.3 66 0.0023 23.6 3.2 18 57-74 95-112 (140)
161 1wlq_A Geminin; coiled-coil; 2 22.0 1.4E+02 0.0049 20.8 4.6 9 170-178 54-62 (83)
162 3o0l_A Uncharacterized protein 21.8 1.8E+02 0.0061 21.1 5.4 50 23-72 36-92 (112)
163 3tnu_B Keratin, type II cytosk 21.8 1.6E+02 0.0056 21.6 5.4 31 150-180 39-69 (129)
164 2eqb_B RAB guanine nucleotide 21.4 1.5E+02 0.005 21.4 4.7 28 151-178 66-93 (97)
165 2d07_B Ubiquitin-like protein 21.4 82 0.0028 21.9 3.3 24 27-50 16-39 (93)
166 4ay0_A Chaperone protein CAF1M 21.3 1.2E+02 0.0042 24.6 4.9 39 30-72 149-187 (218)
167 2wvr_A Geminin; DNA replicatio 21.3 1.5E+02 0.0052 24.2 5.3 24 158-181 119-142 (209)
168 2yf2_A C4B binding protein; im 21.1 1.1E+02 0.0039 19.7 3.6 21 162-182 35-55 (65)
169 4e61_A Protein BIM1; EB1-like 20.8 1.8E+02 0.0061 21.3 5.1 22 155-176 19-40 (106)
170 2wwb_B SEC61gamma, protein tra 20.5 1E+02 0.0035 20.7 3.5 11 206-216 49-59 (68)
171 3kyd_D Small ubiquitin-related 20.2 85 0.0029 23.2 3.3 24 27-50 39-62 (115)
No 1
>2cri_A Vesicle-associated membrane protein-associated protein A; VAP-A, VAP-33, beta sandwitch fold, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=100.00 E-value=7.1e-36 Score=240.37 Aligned_cols=127 Identities=31% Similarity=0.557 Sum_probs=113.9
Q ss_pred CCccEEEecC-eeEEeeecCceeEeEEEEEcCCCCeEEEEEEeCCCCcEEEeCCeeeeCCCCeEEEEEEeccccCCCCCC
Q 027214 6 GNQLISVHPE-ELKFIFELEKQGFCDLKVINNTEHHVAFKVKTTSPKKYFVRPNTGVVQPWDSCIIRVTLQAQRESPPDM 84 (226)
Q Consensus 6 ~~~lL~i~P~-eL~F~~~~~~~~~~~l~L~N~s~~~vaFKVKTT~p~~Y~VrP~~G~I~P~~s~~I~V~l~~~~~~p~~~ 84 (226)
..++|.|+|. +|.|.+++++.+++.|+|+|+++++||||||||+|++|||||+.|+|+||++++|.|+|+++. .++++
T Consensus 11 ~~~~L~i~P~~~L~F~~p~~~~~~~~l~L~N~s~~~VaFKVKTT~p~~y~VrP~~GiI~P~~s~~v~V~l~~~~-~~p~~ 89 (147)
T 2cri_A 11 HEQILVLDPPSDLKFKGPFTDVVTTNLKLQNPSDRKVCFKVKTTAPRRYCVRPNSGIIDPGSIVTVSVMLQPFD-YDPNE 89 (147)
T ss_dssp CCCCSEEESSSEEEEECCSSSCCCEEEEEECCSSSCEEEEEEESCTTSEEEESSEEECCTTCEEEEEEEECCCC-CCTTC
T ss_pred CCCeEEECCCCeEEEeCCCCceEEEEEEEECCCCCcEEEEEECCCCccEEEcCCCcEECCCCeEEEEEEECCCc-CCccc
Confidence 4579999997 999999999999999999999999999999999999999999999999999999999999974 45567
Q ss_pred CCCCeEEEEEEecCCCCCCCCCCCCcccccCCCcceEEEeEEEEeCCCCCCC
Q 027214 85 QCKDKFLLQSTIVPSNTDVDDLPPDTFNKDSGKTIEECKLRVVYVSPSSAQG 136 (226)
Q Consensus 85 ~~~dKFlVqs~~~~~~~~~~d~~~~~f~k~~~~~i~~~kL~v~~~~p~~~~~ 136 (226)
+|+|||+||++.++++. .++ .++|++..+..++++||||+|+.|.+++.
T Consensus 90 ~~kDKFlVqs~~~~~~~--~d~-~~~wk~~~~~~i~e~kLrv~f~~p~~~~~ 138 (147)
T 2cri_A 90 KSKHKFMVQTIFAPPNI--SDM-EAVWKEAKPDELMDSKLRCVFEMPNENDK 138 (147)
T ss_dssp CSCCCEEEEEEECCTTC--CCH-HHHHHHSCTTTCEEEEEEEEEECSCCSSC
T ss_pred cCCCEEEEEEEEcCCCc--ccH-HHHhhcCCCCceEEEEEEEEEecCCCCcc
Confidence 89999999999999864 345 47787777889999999999999887643
No 2
>1z9l_A Vesicle-associated membrane protein-associated protein A; VAP-A, cytoplasmic domain, protein binding; HET: MSE; 1.70A {Rattus norvegicus} PDB: 1z9o_A 2rr3_A 3ikk_A
Probab=100.00 E-value=2.2e-35 Score=232.07 Aligned_cols=123 Identities=32% Similarity=0.552 Sum_probs=110.5
Q ss_pred CCCCCccEEEecC-eeEEeeecCceeEeEEEEEcCCCCeEEEEEEeCCCCcEEEeCCeeeeCCCCeEEEEEEeccccCCC
Q 027214 3 ADGGNQLISVHPE-ELKFIFELEKQGFCDLKVINNTEHHVAFKVKTTSPKKYFVRPNTGVVQPWDSCIIRVTLQAQRESP 81 (226)
Q Consensus 3 ~~~~~~lL~i~P~-eL~F~~~~~~~~~~~l~L~N~s~~~vaFKVKTT~p~~Y~VrP~~G~I~P~~s~~I~V~l~~~~~~p 81 (226)
.+...++|.|+|. +|.|.+|+++.+++.|+|+|+++++||||||||+|++|+|||+.|+|+||++++|.|+++++. .+
T Consensus 4 m~~~~~~L~i~P~~~l~F~~p~~~~~~~~l~L~N~s~~~vaFKVKTT~p~~y~VrP~~G~i~P~~s~~v~V~~~~~~-~~ 82 (128)
T 1z9l_A 4 MAKHEQILVLDPPSDLKFKGPFTDVVTTNLKLQNPSDRKVCFKVKTTAPRRYCVRPNSGVIDPGSIVTVSVMLQPFD-YD 82 (128)
T ss_dssp CCSCCCCSEEESSSEEEEESCCSSCEEEEEEEECCSSSCEEEEEEESCGGGEEEESCEEEECTTCEEEEEEEECCCC-CC
T ss_pred CCCCCCeEEECCCCeEEEcCCCCceEEEEEEEECCCCCeEEEEEECCCCCceEEeCCCcEECCCCeEEEEEEECcCc-CC
Confidence 3455689999997 999999999999999999999999999999999999999999999999999999999999974 44
Q ss_pred CCCCCCCeEEEEEEecCCCCCCCCCCCCcccccCCCcceEEEeEEEEe
Q 027214 82 PDMQCKDKFLLQSTIVPSNTDVDDLPPDTFNKDSGKTIEECKLRVVYV 129 (226)
Q Consensus 82 ~~~~~~dKFlVqs~~~~~~~~~~d~~~~~f~k~~~~~i~~~kL~v~~~ 129 (226)
++.+++|||+||++.++++. .|+ .++|++..+..++++||||+|.
T Consensus 83 p~~~~~dkF~V~s~~~~~~~--~~~-~~~w~~~~~~~i~e~kLrv~f~ 127 (128)
T 1z9l_A 83 PNEKSKHKFMVQTIFAPPNI--SDM-EAVWKEAKPDELMDSKLRCVFE 127 (128)
T ss_dssp TTCCCCCEEEEEEEECCTTC--SCH-HHHHHSCCGGGCEEEEEEEEEE
T ss_pred cccccCCEEEEEEEECCCCc--chH-HHHhhcCCCCceEEEEEEEEEe
Confidence 56689999999999999864 345 4788887788999999999996
No 3
>1wic_A Hypothetical protein riken cDNA 6030424E15; beta sandwich fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.1.11.2
Probab=100.00 E-value=4.7e-36 Score=242.75 Aligned_cols=124 Identities=27% Similarity=0.354 Sum_probs=111.8
Q ss_pred CCccEEEecC-eeEEeeecCceeEeEEEEEcCCCCeEEEEEEeCCCCcEEEeCCeeeeCCCCeEEEEEEeccccCCCCCC
Q 027214 6 GNQLISVHPE-ELKFIFELEKQGFCDLKVINNTEHHVAFKVKTTSPKKYFVRPNTGVVQPWDSCIIRVTLQAQRESPPDM 84 (226)
Q Consensus 6 ~~~lL~i~P~-eL~F~~~~~~~~~~~l~L~N~s~~~vaFKVKTT~p~~Y~VrP~~G~I~P~~s~~I~V~l~~~~~~p~~~ 84 (226)
+.++|.|+|. +|.|.++++++++|.|+|+|+++++||||||||+|++|||||+.|+|+||++++|.|+||++.+ .
T Consensus 15 ~~~~L~i~P~~~L~F~~~~~~~~~~~l~L~N~s~~~VaFKVKTT~p~~y~VrP~~GiI~P~~s~~V~V~lq~~~~----~ 90 (152)
T 1wic_A 15 KGPLLHISPAEELYFGSIESGEKKTLIVLTNVTKNIVAFKVRTTAPEKYRVKPSNSSCDPGASIDIIVSPHGGLT----V 90 (152)
T ss_dssp CCSSBCBBSSSCBCCCCSSSSCCCEEEEEEBCSSSCEEEEEEESCTTTEEEESSEEEECTTCEEEEEEEECSSSC----C
T ss_pred CCCeEEECCCCeEEEeCCCCceEEEEEEEEcCCCCeEEEEEECCCCCceeecCCCcEECCCCeEEEEEEecCccc----C
Confidence 4689999998 9999999999999999999999999999999999999999999999999999999999999743 2
Q ss_pred CCCCeEEEEEEecC--CCCCCCCCCCCcccccCCCcceEEEeEEEEeCCCCC
Q 027214 85 QCKDKFLLQSTIVP--SNTDVDDLPPDTFNKDSGKTIEECKLRVVYVSPSSA 134 (226)
Q Consensus 85 ~~~dKFlVqs~~~~--~~~~~~d~~~~~f~k~~~~~i~~~kL~v~~~~p~~~ 134 (226)
+++|||+||++.++ ++.+.+|+. ++|++..+..++++||||+|+.+.+|
T Consensus 91 ~~kDKFlVqs~~v~~~~~~~~~d~~-~~wk~~~~~~i~e~kLrv~f~~~~~p 141 (152)
T 1wic_A 91 SAQDRFLIMAAEMEQSSGTGPAELS-QFWKEVPRNKVMEHRLRCHTVESSKP 141 (152)
T ss_dssp CSSCCEEEEEEECCSSCCCSHHHHH-HHHHHSCTTTCEEEEECBCCCCSCSS
T ss_pred CCCCEEEEEEEEcCCcCCCChhhHH-HHHhccCCCceEEEEEEEEECCCCCC
Confidence 68999999999999 555555664 78887778899999999999988776
No 4
>1msp_A MSP, major sperm protein; cytoskeletal protein, cell motility protein; 2.50A {Ascaris suum} SCOP: b.1.11.2 PDB: 3msp_A 2bvu_A 2msp_A 1grw_A
Probab=100.00 E-value=5.5e-33 Score=218.20 Aligned_cols=122 Identities=18% Similarity=0.333 Sum_probs=107.6
Q ss_pred CCCCccEEEecC-eeEEeeecCceeEeEEEEEcCCCCeEEEEEEeCCCCcEEEeCCeeeeCCCCeEEEEEEeccccCCCC
Q 027214 4 DGGNQLISVHPE-ELKFIFELEKQGFCDLKVINNTEHHVAFKVKTTSPKKYFVRPNTGVVQPWDSCIIRVTLQAQRESPP 82 (226)
Q Consensus 4 ~~~~~lL~i~P~-eL~F~~~~~~~~~~~l~L~N~s~~~vaFKVKTT~p~~Y~VrP~~G~I~P~~s~~I~V~l~~~~~~p~ 82 (226)
+-....|.++|. +|.|++|+++.++|.|+|+|+|+++||||||||+|++|||||++|+|+||+++.|.|+||++.+.|+
T Consensus 3 s~~~~~l~i~P~~~l~F~~p~~~~~~~~l~l~N~s~~~vaFKVKTT~p~~y~VrP~~Gii~P~~s~~v~V~~q~~~~~~~ 82 (126)
T 1msp_A 3 SVPPGDINTQPSQKIVFNAPYDDKHTYHIKITNAGGRRIGWAIKTTNMRRLSVDPPCGVLDPKEKVLMAVSCDTFNAATE 82 (126)
T ss_dssp CCCCCCEEEESSSCEEEESCCSSCCCEEEEEEECSSSCEEEEEEESCTTTEEEESCEEEECTTCEEEEEEEECCCCGGGS
T ss_pred CCCCCeEEEcCCCeEEEcCcCCcceEEEEEEECCCCCeEEEEEEcCCCCcEEEECCCeEECCCCEEEEEEEecCCCCCCC
Confidence 345678999998 9999999999999999999999999999999999999999999999999999999999999876665
Q ss_pred CCCCCCeEEEEEEecCCCCCCCCCCCCcccccCCCcceEEEeEEEEe
Q 027214 83 DMQCKDKFLLQSTIVPSNTDVDDLPPDTFNKDSGKTIEECKLRVVYV 129 (226)
Q Consensus 83 ~~~~~dKFlVqs~~~~~~~~~~d~~~~~f~k~~~~~i~~~kL~v~~~ 129 (226)
+. .+|||+|||+.++++.+ +|+..+||.++ ..+..++|+|.|.
T Consensus 83 ~~-~kDKf~Vq~~~~p~~~~-~~~~~~wf~~d--~~~~~k~L~V~Yn 125 (126)
T 1msp_A 83 DL-NNDRITIEWTNTPDGAA-KQFRREWFQGD--GMVRRKNLPIEYN 125 (126)
T ss_dssp CC-SSCEEEEEEEECCTTCC-SSCCTHHHHSS--SCCEEEEEEEEEE
T ss_pred cc-CCCEEEEEEEECCCCcc-hhhhHHhhcCC--CceEEEEEEEEec
Confidence 53 49999999999998864 57876666443 4689999999996
No 5
>1row_A SSP-19, MSP-domain protein like family member; beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Caenorhabditis elegans} SCOP: b.1.11.2
Probab=99.96 E-value=1.3e-28 Score=188.70 Aligned_cols=104 Identities=18% Similarity=0.281 Sum_probs=87.9
Q ss_pred EEEecCeeEEeeecCceeEeEEEEEcCCCCeEEEEEEeCCCCcEEEeCCeeeeCCCCeEEEEEEeccccCCCCCCCCCCe
Q 027214 10 ISVHPEELKFIFELEKQGFCDLKVINNTEHHVAFKVKTTSPKKYFVRPNTGVVQPWDSCIIRVTLQAQRESPPDMQCKDK 89 (226)
Q Consensus 10 L~i~P~eL~F~~~~~~~~~~~l~L~N~s~~~vaFKVKTT~p~~Y~VrP~~G~I~P~~s~~I~V~l~~~~~~p~~~~~~dK 89 (226)
|.|+|.+|.|.++ ..++.|+|+|+++++||||||||+|++|||||++|+|+||++++|.|++|++ + .++||
T Consensus 3 L~i~P~~l~F~~~---~~~~~l~L~N~t~~~vaFKVKtT~p~~y~VrP~~G~I~P~~~~~i~I~~q~~---~---~~~dK 73 (109)
T 1row_A 3 LTADPPACTVPAA---GVSSTHKLVNGGAEKIVFKIKSSNNNEYRIAPVFGFVDPSGSKDVVITRTAG---A---PKEDK 73 (109)
T ss_dssp CEEESSSEEEETT---CEEEEEEEEECSSSCEEEEEEESCSSSEEEECSEEEECTTEEEEEEEEECSC---C---CEEEE
T ss_pred EEEECCEeEEeCC---CCeEEEEEEcCCCCeEEEEEEeCCCCceEEcCCceEECCCCeEEEEEEeCCC---C---CCCCE
Confidence 8899999999987 3479999999999999999999999999999999999999999999999985 2 36999
Q ss_pred EEEEEEecCCCCCCCCCCCCcccccCCCcceEEEeEEE
Q 027214 90 FLLQSTIVPSNTDVDDLPPDTFNKDSGKTIEECKLRVV 127 (226)
Q Consensus 90 FlVqs~~~~~~~~~~d~~~~~f~k~~~~~i~~~kL~v~ 127 (226)
|+||++.++++. .|. .++|++..+ ..+.+|+++
T Consensus 74 flvq~~~~~~~~--~d~-~~~fk~~~~--~g~~~i~l~ 106 (109)
T 1row_A 74 LVVHFASAPADA--TDA-QAAFVAVAP--AGTVTIPMS 106 (109)
T ss_dssp EEEEEEECCTTC--SCH-HHHHTTCCC--CEEEEEEEE
T ss_pred EEEEEEECCCCC--CCH-HHHhhcCCC--CceEEEEEE
Confidence 999999998763 233 467777543 445566553
No 6
>1m1s_A WR4; structural genomics, major sperm protein, bioinformatics, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: b.1.11.2
Probab=99.96 E-value=4.6e-28 Score=187.28 Aligned_cols=107 Identities=22% Similarity=0.381 Sum_probs=91.7
Q ss_pred CccEEEecCeeEEeeecCceeEeEEEEEcCCCCeEEEEEEeCCCCcEEEeCCeeeeCCCCeEEEEEEeccccCCCCCCCC
Q 027214 7 NQLISVHPEELKFIFELEKQGFCDLKVINNTEHHVAFKVKTTSPKKYFVRPNTGVVQPWDSCIIRVTLQAQRESPPDMQC 86 (226)
Q Consensus 7 ~~lL~i~P~eL~F~~~~~~~~~~~l~L~N~s~~~vaFKVKTT~p~~Y~VrP~~G~I~P~~s~~I~V~l~~~~~~p~~~~~ 86 (226)
..++.++|.+|.|+++ +.++.|+|+|+++++||||||||+|++|||||++|+|+||++++|.|++|++ + .+
T Consensus 8 ~~~~~~~p~~l~F~~~---gg~~~l~L~N~t~~~vAFKVKtT~p~~YrVrP~~G~I~Pg~~~~I~I~~q~~---~---~k 78 (116)
T 1m1s_A 8 HSMINVDPPTGNYPAT---GGNSTHNITSESDSRLAFKVKSSNNEHYRVRPVYGFVDAKGKSKLDINRLPG---P---PK 78 (116)
T ss_dssp CCSEEEESSEEEECTT---CEEEEEEEEECSSSEEEEEEEESCTTTEEEECSEEEECTTCEEEEEEEECSC---C---SC
T ss_pred ceeeecCCCeEEEecC---CCEEEEEEECCCCCeEEEEEEecCCCceEEcCCceEECCCCeEEEEEEeCCC---C---CC
Confidence 4689999999999875 4689999999999999999999999999999999999999999999999996 2 35
Q ss_pred CCeEEEEEEecCCCCCCCCCCCCcccccCCCcceEEEeEEE
Q 027214 87 KDKFLLQSTIVPSNTDVDDLPPDTFNKDSGKTIEECKLRVV 127 (226)
Q Consensus 87 ~dKFlVqs~~~~~~~~~~d~~~~~f~k~~~~~i~~~kL~v~ 127 (226)
+|||+||++.++++. .|. .++|++..+ ..+.+|++.
T Consensus 79 ~DKflVq~~~~~~d~--~d~-~~~fk~~~~--~g~~~i~l~ 114 (116)
T 1m1s_A 79 EDKIVIQYAEVPAEE--TDP-MAPFKAGAQ--QGEIIVKLI 114 (116)
T ss_dssp EEEEEEEEEEECTTC--CCT-THHHHTTCC--CEEEEEEEE
T ss_pred CCEEEEEEEECCCCC--CCH-HHHHhcCCC--CceEEEEEE
Confidence 899999999999753 233 467877544 577777764
No 7
>2ys4_A Hydrocephalus-inducing protein homolog; hydin, PAPD-like, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.46 E-value=7e-07 Score=68.37 Aligned_cols=83 Identities=18% Similarity=0.301 Sum_probs=63.5
Q ss_pred CCCccEEEecCeeEEeee-cCceeEeEEEEEcCCCCeEEEEEEeCCCCcEEEeCCeeeeCCCCeEEEEEEeccccCCCCC
Q 027214 5 GGNQLISVHPEELKFIFE-LEKQGFCDLKVINNTEHHVAFKVKTTSPKKYFVRPNTGVVQPWDSCIIRVTLQAQRESPPD 83 (226)
Q Consensus 5 ~~~~lL~i~P~eL~F~~~-~~~~~~~~l~L~N~s~~~vaFKVKTT~p~~Y~VrP~~G~I~P~~s~~I~V~l~~~~~~p~~ 83 (226)
.....|.+ |..|.|..- .+...+..+.|+|.++.++.|++++. .-|.|.|+.|.|.||+++.|.|+..|...
T Consensus 21 ~~~~~l~~-p~~l~fg~~~v~~~~~~~~~l~N~g~~~~~f~~~~~--~~F~i~P~~g~L~pg~~~~i~V~F~P~~~---- 93 (122)
T 2ys4_A 21 GARAILDF-PDKLNFSTCPVKYSTQKILLVRNIGNKNAVFHIKTC--RPFSIEPAIGTLNVGESMQLEVEFEPQSV---- 93 (122)
T ss_dssp SCCCCCCC-CSEECCCSEESSSCEEEEEEEECCSSSCEEEEEECC--TTEEEESSEEEECTTCEEEEEEEECCSSS----
T ss_pred cCCcEECC-CCeeecCCeecCCeEEEEEEEEECCCCCEEEEEecC--CCeEEECCcCEECCCCEEEEEEEEEcCCC----
Confidence 33444555 667888653 45677889999999999999999975 46999999999999999999999998521
Q ss_pred CCCCCeEEEEE
Q 027214 84 MQCKDKFLLQS 94 (226)
Q Consensus 84 ~~~~dKFlVqs 94 (226)
......+.|..
T Consensus 94 g~~~~~l~v~~ 104 (122)
T 2ys4_A 94 GDHSGRLIVCY 104 (122)
T ss_dssp BCCCCBCEEEE
T ss_pred ccEEEEEEEEE
Confidence 12345555554
No 8
>2e6j_A Hydin protein; PAPD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.20 E-value=8.2e-06 Score=60.83 Aligned_cols=74 Identities=12% Similarity=0.188 Sum_probs=62.2
Q ss_pred CCCCccEEEecCeeEEeee-cCceeEeEEEEEcCCCCeEEEEEEeCCC---CcEEEeCCeeeeCCCCeEEEEEEeccc
Q 027214 4 DGGNQLISVHPEELKFIFE-LEKQGFCDLKVINNTEHHVAFKVKTTSP---KKYFVRPNTGVVQPWDSCIIRVTLQAQ 77 (226)
Q Consensus 4 ~~~~~lL~i~P~eL~F~~~-~~~~~~~~l~L~N~s~~~vaFKVKTT~p---~~Y~VrP~~G~I~P~~s~~I~V~l~~~ 77 (226)
.+-...+.+++..|.|-.- .+...+..++|+|+++.++.|++..... ..|.+.|+.|.|.||++..|.|++.+.
T Consensus 4 ~~~~P~i~~~~~~ldFG~v~~g~~~~~~~~l~N~g~~p~~~~~~~~~~~~~~~f~v~p~~g~i~pg~~~~i~V~f~~~ 81 (112)
T 2e6j_A 4 GSSGPKIHFNFELLDIGKVFTGSAHCYEAILYNKGSIDALFNMTPPTSALGACFVFSPKEGIIEPSGVQAIQISFSSI 81 (112)
T ss_dssp SCCCCSEEESCSEEEEEEEESSCCEEEEEEEEECCSSCEEEEECCCSSHHHHHCEEESSEEEECTTBCCEEEEEECCC
T ss_pred ccCCCEEEECcccEecEeEEECCEEEEEEEEEECCcceEEEEEecCCccccCcEEEECCcCEECCCCEEEEEEEEECC
Confidence 4456788999999988653 4667888999999999999999964222 469999999999999999999999984
No 9
>3qbt_B Inositol polyphosphate 5-phosphatase OCRL-1; protein transport, vesicular trafficking, GTPase, LOWE syndr immunoglobulin fold, RAB8A, endocytosis; HET: GNP; 2.00A {Homo sapiens}
Probab=98.15 E-value=2.1e-05 Score=61.90 Aligned_cols=71 Identities=13% Similarity=0.125 Sum_probs=60.7
Q ss_pred CCccEEEecCeeEEee-ecCceeEeEEEEEcCCCCeEEEEEEeC------CCCcEEEeCCeeeeCCCCeEEEEEEecc
Q 027214 6 GNQLISVHPEELKFIF-ELEKQGFCDLKVINNTEHHVAFKVKTT------SPKKYFVRPNTGVVQPWDSCIIRVTLQA 76 (226)
Q Consensus 6 ~~~lL~i~P~eL~F~~-~~~~~~~~~l~L~N~s~~~vaFKVKTT------~p~~Y~VrP~~G~I~P~~s~~I~V~l~~ 76 (226)
.-+.+.+++.+|.|-. .+....++.|+|+|++.-+..|++.-. .+..+.|.|..|.|.||+++.|.|++.-
T Consensus 23 ~~P~i~v~~~~ldFG~v~~~~~~~~~l~I~Ntg~vpa~F~f~~~~~~~~~~~~wl~v~P~~G~L~Pge~~~I~v~~~v 100 (140)
T 3qbt_B 23 FLPSLELSRREFVFENVKFRQLQKEKFQISNNGQVPCHFSFIPKLNDSQYCKPWLRAEPFEGYLEPNETVDISLDVYV 100 (140)
T ss_dssp TSCCEEESCCEEEEEEECBTCCEEEEEEEEECSSSCEEEEEECCTTCSSSSCTTEEEESCEEEECTTCEEEEEEEECB
T ss_pred cCCceEeeeeeEEeeeceeeeeeeeEEEEEcCCccceEEEEecCCCchhhhhHhhhcCCcccccCCCCeeEEEEEEEE
Confidence 3467889999999975 356778999999999999999999853 3457999999999999999999999874
No 10
>3qis_A Inositol polyphosphate 5-phosphatase OCRL-1; DENT disease, RAC1, RAB gtpases, APPL1, endocytic PATH golgi complex, hydrolase-protein binding complex; 2.30A {Homo sapiens} PDB: 2qv2_A
Probab=97.64 E-value=0.00031 Score=63.31 Aligned_cols=72 Identities=13% Similarity=0.114 Sum_probs=59.9
Q ss_pred CCccEEEecCeeEEee-ecCceeEeEEEEEcCCCCeEEEEEEeCC------CCcEEEeCCeeeeCCCCeEEEEEEeccc
Q 027214 6 GNQLISVHPEELKFIF-ELEKQGFCDLKVINNTEHHVAFKVKTTS------PKKYFVRPNTGVVQPWDSCIIRVTLQAQ 77 (226)
Q Consensus 6 ~~~lL~i~P~eL~F~~-~~~~~~~~~l~L~N~s~~~vaFKVKTT~------p~~Y~VrP~~G~I~P~~s~~I~V~l~~~ 77 (226)
.-+.+.|++.++.|.. .+....+..|+|+|++.-+..|++.... +..+.|.|..|.|.||+++.|.|++...
T Consensus 26 ~~P~v~v~~~~idFg~v~~~~~~~~~l~i~N~g~~pa~f~f~~~~~~~~~~~~wl~v~p~~g~l~Pge~~~i~l~~~v~ 104 (366)
T 3qis_A 26 FLPSLELSRREFVFENVKFRQLQKEKFQISNNGQVPCHFSFIPKLNDSQYCKPWLRAEPFEGYLEPNETVDISLDVYVS 104 (366)
T ss_dssp --CCEEESCSEEEEEEECBTCCEEEEEEEEECSSSCEEEEEECCTTCSSSSCTTEEEESCEEEECTTCEEEEEEEECBC
T ss_pred cCCeEEEecCeEEeeeeeeCCeEEEEEEEEecCCceEEEEEEeCCCCCCCCCCcEEEeCCccEECCCCEEEEEEEEEEC
Confidence 3467899999999964 4677889999999999999999998642 3347799999999999999999998753
No 11
>2qsv_A Uncharacterized protein; MCSG, structural genomics, porphyromonas gingivalis W83, PSI protein structure initiative; 2.10A {Porphyromonas gingivalis}
Probab=96.49 E-value=0.013 Score=48.85 Aligned_cols=67 Identities=19% Similarity=0.220 Sum_probs=57.7
Q ss_pred EEEecCeeEEeee-cCceeEeEEEEEcCCCCeEEEEEEeCCCCcEEEeCCeeeeCCCCeEEEEEEeccc
Q 027214 10 ISVHPEELKFIFE-LEKQGFCDLKVINNTEHHVAFKVKTTSPKKYFVRPNTGVVQPWDSCIIRVTLQAQ 77 (226)
Q Consensus 10 L~i~P~eL~F~~~-~~~~~~~~l~L~N~s~~~vaFKVKTT~p~~Y~VrP~~G~I~P~~s~~I~V~l~~~ 77 (226)
|.++|.++.|.-- .++.....++++|.++.++-++.-.. |..+..++..+.|.||++..|.|++.+.
T Consensus 3 i~~~~~~idFg~v~~g~~~~~~~~i~N~g~~pl~i~~~~~-p~~~~~~~~~~~I~PG~~g~I~vt~~~~ 70 (220)
T 2qsv_A 3 LQVSNARLLFPISMPEDEGVVRLVVNNTDESDLQVAVVSL-PSFVSLDDRAFRLQAREPRELNLSLAVP 70 (220)
T ss_dssp EEESCSEEECCSBCTTCCCEEEEEEEECSSSCEEEEEEEC-CTTEECSCCEEEECSSSCEEEEEEECCC
T ss_pred eEEecCeeEcccccCCCcceEEEEEEeCCCCceEEEeccC-CCceEeeeCcceeCCCCceEEEEEEcch
Confidence 8899999999763 34456779999999999999997644 8888999999999999999999999874
No 12
>2qsv_A Uncharacterized protein; MCSG, structural genomics, porphyromonas gingivalis W83, PSI protein structure initiative; 2.10A {Porphyromonas gingivalis}
Probab=96.27 E-value=0.022 Score=47.31 Aligned_cols=69 Identities=13% Similarity=0.172 Sum_probs=57.7
Q ss_pred CccEEEecCeeEEeeecCceeEeEEEEEcCCCCeEEE-EEEeCCCCcEEEeCCeeeeCCCCeEEEEEEeccc
Q 027214 7 NQLISVHPEELKFIFELEKQGFCDLKVINNTEHHVAF-KVKTTSPKKYFVRPNTGVVQPWDSCIIRVTLQAQ 77 (226)
Q Consensus 7 ~~lL~i~P~eL~F~~~~~~~~~~~l~L~N~s~~~vaF-KVKTT~p~~Y~VrP~~G~I~P~~s~~I~V~l~~~ 77 (226)
...+.++ ..+.|-.-.+...++.++|+|.++.++.+ +|+|++ +...+.++.+.|.||++..|.|++.+.
T Consensus 117 ~~~i~~~-~~~dfG~i~g~~~~~~f~i~N~G~~pL~I~~v~~sc-gct~~~~~~~~i~PGe~~~i~v~~~~~ 186 (220)
T 2qsv_A 117 TGVMELS-TYLDMGQLDGETTKAAIEIRNVGAGPLRLHSVTTRN-PALTAVPDRTEIKPGGSTLLRIAVDPQ 186 (220)
T ss_dssp CCCEECC-CEEEEEECTTSCEEEEEEEEECSSSCEEEEEEEECS-TTEEEEESCSEECTTCEEEEEEEECHH
T ss_pred CCEEEEE-eEEeeeccCCCeEEEEEEEEECCCCCEEEEEEEeCC-CCEeeecCCccCCCCCEEEEEEEEecC
Confidence 3457778 88888632256778899999999999998 888765 799999999999999999999999874
No 13
>3q48_A Chaperone CUPB2; IG fold, periplasmic chaperone; 2.50A {Pseudomonas aeruginosa}
Probab=94.42 E-value=0.67 Score=39.59 Aligned_cols=111 Identities=14% Similarity=0.205 Sum_probs=70.9
Q ss_pred ccEEEecCeeEEeeecCceeEeEEEEEcCCCCeEEEEEEeCCC----------CcEEEeCCeeeeCCCCeEEEEEEeccc
Q 027214 8 QLISVHPEELKFIFELEKQGFCDLKVINNTEHHVAFKVKTTSP----------KKYFVRPNTGVVQPWDSCIIRVTLQAQ 77 (226)
Q Consensus 8 ~lL~i~P~eL~F~~~~~~~~~~~l~L~N~s~~~vaFKVKTT~p----------~~Y~VrP~~G~I~P~~s~~I~V~l~~~ 77 (226)
.-|.|.|..+.|+.. .....|+|+|.++.++.-.+...+. .-|.|.|+.--|+||+...|.|.....
T Consensus 28 A~v~i~~TRvIy~~~---~k~~sl~l~N~~~~P~LvQsWid~~~~~~~p~~~~~pfivtPPl~rl~pg~~q~lRI~~~~~ 104 (257)
T 3q48_A 28 AGLIAQGTRVVFPAS---EREVTLRVSNTSGTPVLAQAWIDDGRQDVPPEELQVPFSVTPAVTRVEPNGGAVLRIAYLKA 104 (257)
T ss_dssp ---CCSCSEEEEETT---CSEEEEEEEECSSSCEEEEEEEESSCCSSCGGGGCCSEEEESSEEEECTTEEEEEEEEECCC
T ss_pred eeEEEcceEEEEeCC---CcEEEEEEEeCCCCeEEEEEEEEcCCCccCcccccCCEEEcCCEEEECCCCceEEEEEECCC
Confidence 347778888888753 3457999999999887777665431 139999999999999999999987764
Q ss_pred cCCCCCCCCCCeEEEEEEecCCCCCCCCCCCCcccccCCCcceEEEeEEEEeCCC
Q 027214 78 RESPPDMQCKDKFLLQSTIVPSNTDVDDLPPDTFNKDSGKTIEECKLRVVYVSPS 132 (226)
Q Consensus 78 ~~~p~~~~~~dKFlVqs~~~~~~~~~~d~~~~~f~k~~~~~i~~~kL~v~~~~p~ 132 (226)
..|.|. ..-|-+..-.+|+.... + ...=......+|++-|-+..
T Consensus 105 -~LP~Dr--ESlf~lnv~eIPp~~~~-~-------~n~Lqiair~rIKLFyRP~~ 148 (257)
T 3q48_A 105 -PLPTDR--ESLFWLNILEVPPRDED-E-------NNALQFSFRSRFKLFFRPSQ 148 (257)
T ss_dssp -CCCSSS--CEEEEEEEEEECCC-----------------CCEEEEEEEEEECTT
T ss_pred -CCCCCc--eeEEEEEeeecCCCCCC-C-------CceEEEEEEEEEEEEEeccc
Confidence 355553 24466666666653211 0 00011235677777776543
No 14
>2xg5_A PAPD, chaperone protein PAPD; chaperone, chaperone-surface active protein complex; HET: EC2 EC5; 2.00A {Escherichia coli} PDB: 1pdk_A 2uy6_A 2uy7_A 2j2z_A 2xg4_A* 2w07_A* 3me0_A* 1n0l_A 2wmp_A 3dpa_A 2j7l_A 1qpp_A 1qpx_A
Probab=92.97 E-value=1.3 Score=36.66 Aligned_cols=109 Identities=12% Similarity=0.221 Sum_probs=72.7
Q ss_pred EEEecCeeEEeeecCceeEeEEEEEcCCCC-eEEEEEEeCC-------CCcEEEeCCeeeeCCCCeEEEEEEeccc-cCC
Q 027214 10 ISVHPEELKFIFELEKQGFCDLKVINNTEH-HVAFKVKTTS-------PKKYFVRPNTGVVQPWDSCIIRVTLQAQ-RES 80 (226)
Q Consensus 10 L~i~P~eL~F~~~~~~~~~~~l~L~N~s~~-~vaFKVKTT~-------p~~Y~VrP~~G~I~P~~s~~I~V~l~~~-~~~ 80 (226)
|.|++..+.|+.. .....|+|+|.++. ++.-.+...+ ..-|.|-|+.--|+||+...|.|...+. ...
T Consensus 2 v~l~~TRvIy~~~---~k~~sl~l~N~~~~~p~LvQsWi~~~~~~~~~~~pfivtPPl~rl~p~~~q~lRI~~~~~~~~l 78 (218)
T 2xg5_A 2 VSLDRTRAVFDGS---EKSMTLDISNDNKQLPYLAQAWIENENQEKIITGPVIATPPVQRLEPGAKSMVRLSTTPDISKL 78 (218)
T ss_dssp EEESCSEEEEETT---SSEEEEEEEECCSSSCEEEEEEEECTTSCEECSSSEEEECSEEEECTTCEEEEEEEECGGGGGS
T ss_pred cEeCceEEEEeCC---CCEEEEEEEcCCCCCcEEEEEEEecCCCCccccCCEEEcCCeEEECCCCceEEEEEecCCCCCC
Confidence 5677888888764 34679999999988 7776665543 2249999999999999999999998762 245
Q ss_pred CCCCCCCCeEEEEEEecCCCCCCCCCCCCcccccCCCcceEEEeEEEEeCCC
Q 027214 81 PPDMQCKDKFLLQSTIVPSNTDVDDLPPDTFNKDSGKTIEECKLRVVYVSPS 132 (226)
Q Consensus 81 p~~~~~~dKFlVqs~~~~~~~~~~d~~~~~f~k~~~~~i~~~kL~v~~~~p~ 132 (226)
|.|. ..-|-+..-.+|+..+ + +..=......+|++-|-+..
T Consensus 79 P~Dr--ESlf~lnv~eIPp~~~--~-------~n~lqia~r~rIKlFyRP~~ 119 (218)
T 2xg5_A 79 PQDR--ESLFYFNLREIPPRSE--K-------ANVLQIALQTKIKLFYRPAA 119 (218)
T ss_dssp CSSS--CEEEEEEEEEECCCCC--C-------TTEEEEEEEEEEEEEEECGG
T ss_pred CCCc--eEEEEEEeecCCCCCC--C-------CceEEEEehheeeEEEcCcc
Confidence 6653 3455555566664311 1 00011235677888776543
No 15
>2co7_B SAFB chaperone, putative fimbriae assembly chaperone; pilus subunit, adhesion, strand complementation, pathogenesis, fibril protein; 1.8A {Salmonella typhimurium} SCOP: b.1.11.1 b.7.2.1 PDB: 2co6_B
Probab=92.95 E-value=0.73 Score=38.38 Aligned_cols=86 Identities=13% Similarity=0.164 Sum_probs=63.8
Q ss_pred ccEEEecCeeEEeeecCceeEeEEEEEcCCCCeEEEEEEeCC-----CCcEEEeCCeeeeCCCCeEEEEEEeccccCCCC
Q 027214 8 QLISVHPEELKFIFELEKQGFCDLKVINNTEHHVAFKVKTTS-----PKKYFVRPNTGVVQPWDSCIIRVTLQAQRESPP 82 (226)
Q Consensus 8 ~lL~i~P~eL~F~~~~~~~~~~~l~L~N~s~~~vaFKVKTT~-----p~~Y~VrP~~G~I~P~~s~~I~V~l~~~~~~p~ 82 (226)
.-|.|++..+.|+.. .....|+|+|.++.++.-.+...+ ..-|.|-|+.--|+||+...|.|..... ..|.
T Consensus 12 A~v~i~~TRvIy~~~---~k~~sl~l~N~~~~p~LvQsWv~~~~~~~~~pfivtPPl~rl~p~~~q~lRI~~~~~-~lP~ 87 (221)
T 2co7_B 12 FSVKLGATRVIYHAG---TAGATLSVSNPQNYPILVQSSVKAADKSSPAPFLVMPPLFRLEANQQSQLRIVRTGG-DMPT 87 (221)
T ss_dssp EECEESCSEEEEETT---SSCEEEEEECCSSSCEEEEEEEEETTSSSBCSEEEESSEEEECTTCEEEEEEEECCC-CCCS
T ss_pred EEEEEcceEEEEcCC---CCEEEEEEEcCCCCcEEEEEEEecCCCCccCCEEEeCCEEEECCCCceEEEEEECCC-CCCC
Confidence 457888989999864 345789999999988776665532 1259999999999999999999998763 4565
Q ss_pred CCCCCCeEEEEEEecCC
Q 027214 83 DMQCKDKFLLQSTIVPS 99 (226)
Q Consensus 83 ~~~~~dKFlVqs~~~~~ 99 (226)
|. ..-|-+..-.+|+
T Consensus 88 Dr--Eslf~lnv~eIPp 102 (221)
T 2co7_B 88 DR--ETLQWVCIKAVPP 102 (221)
T ss_dssp SS--CEEEEEEEEEECC
T ss_pred Cc--eEEEEEEeecCCC
Confidence 53 3456666566664
No 16
>1klf_A FIMC chaperone, chaperone protein FIMC; adhesin-chaperone complex, mannose-bound, chaperone/adhesin complex complex; HET: MAN; 2.79A {Escherichia coli} SCOP: b.1.11.1 b.7.2.1 PDB: 1kiu_A* 3rfz_C 1qun_A 1bf8_A 1ze3_C 3bwu_C 3jwn_C
Probab=91.98 E-value=1.9 Score=35.44 Aligned_cols=112 Identities=13% Similarity=0.192 Sum_probs=72.4
Q ss_pred EEEecCeeEEeeecCceeEeEEEEEcCCCC-eEEEEEEeCC-----CCcEEEeCCeeeeCCCCeEEEEEEe-ccccCCCC
Q 027214 10 ISVHPEELKFIFELEKQGFCDLKVINNTEH-HVAFKVKTTS-----PKKYFVRPNTGVVQPWDSCIIRVTL-QAQRESPP 82 (226)
Q Consensus 10 L~i~P~eL~F~~~~~~~~~~~l~L~N~s~~-~vaFKVKTT~-----p~~Y~VrP~~G~I~P~~s~~I~V~l-~~~~~~p~ 82 (226)
+.|++..+.|+.. .....|+|+|.++. ++.-.+...+ ..-|.|-|+.--|+||+...|.|.. .+ ...|.
T Consensus 2 v~l~~TRvIy~~~---~k~~sl~l~N~~~~~p~LvQsWi~~~~~~~~~pfivtPPl~rl~p~~~q~lRI~~~~~-~~lP~ 77 (205)
T 1klf_A 2 VALGATRVIYPAG---QKQVQLAVTNNDENSTYLIQSWVENADGVKDGRFIVTPPLFAMKGKKENTLRILDATN-NQLPQ 77 (205)
T ss_dssp EEESCSEEEEETT---CSEEEEEEEECCSSCCEEEEEEEEETTSCCCSSEEEESSEEEECSSEEEEEEEEECSC-SCSCS
T ss_pred eEecceEEEEeCC---CcEEEEEEEcCCCCCcEEEEEEEecCCCCccCCEEEcCCeEEECCCCceEEEEEecCC-CCCCC
Confidence 5677888888764 34679999999987 7766655432 2359999999999999999999998 65 24565
Q ss_pred CCCCCCeEEEEEEecCCCCCCCCCCCCcccccCCCcceEEEeEEEEeCCCC
Q 027214 83 DMQCKDKFLLQSTIVPSNTDVDDLPPDTFNKDSGKTIEECKLRVVYVSPSS 133 (226)
Q Consensus 83 ~~~~~dKFlVqs~~~~~~~~~~d~~~~~f~k~~~~~i~~~kL~v~~~~p~~ 133 (226)
|. ..-|-+..-.+|+.....+ + +..=......+|++-|-+..-
T Consensus 78 Dr--Eslf~lnv~eIPp~~~~~~---~---~n~lqia~r~riKlFyRP~~l 120 (205)
T 1klf_A 78 DR--ESLFWMNVKAIPSMDKSKL---T---ENTLQLAIISRIKLYYRPAKL 120 (205)
T ss_dssp SS--CEEEEEEEEEECCCCTTST---T---SCEEEEEEEEEEEEEEECTTC
T ss_pred Cc--eEEEEEEeEecCCCCcccc---C---CceEEEEeeeeeeEEEccccc
Confidence 53 3355555566664321100 0 000012256777777765443
No 17
>4djm_A DRAB; chaperone, PILI; 2.52A {Escherichia coli}
Probab=91.69 E-value=1.2 Score=37.66 Aligned_cols=86 Identities=17% Similarity=0.202 Sum_probs=61.6
Q ss_pred ccEEEecCeeEEeeecCceeEeEEEEEcCCCCeEEEEEEeCC-----CCcEEEeCCeeeeCCCCeEEEEEEeccccCCCC
Q 027214 8 QLISVHPEELKFIFELEKQGFCDLKVINNTEHHVAFKVKTTS-----PKKYFVRPNTGVVQPWDSCIIRVTLQAQRESPP 82 (226)
Q Consensus 8 ~lL~i~P~eL~F~~~~~~~~~~~l~L~N~s~~~vaFKVKTT~-----p~~Y~VrP~~G~I~P~~s~~I~V~l~~~~~~p~ 82 (226)
.-|.|.+..+.|+.. .....|+|+|.++.++.-.+...+ ..-|.|.|+.--|+||+...|.|..... ..|.
T Consensus 22 a~v~l~~TRvIy~~~---~k~~sl~l~N~~~~P~LvQsWv~~~~~~~~~pfivtPPlfRlep~~~q~lRIi~~~~-~LP~ 97 (239)
T 4djm_A 22 FSLHLGATRVVYNPA---SSGETLTVINDQDYPMLVQSEVLSEDQKSPAPFVVTPPLFRLDGQQSSRLRIVRTGG-EFPP 97 (239)
T ss_dssp ECCEESCSEEEECTT---SSCEEEEEEECSSSCEEEEEEEECTTSSSBCSEEEESSEEEECTTEEEEEEEEECSC-CCCS
T ss_pred EeEEEcceEEEEeCC---CCEEEEEEEeCCCCcEEEEEEEEcCCCCccCCEEEcCCeEEECCCCceEEEEEECCC-CCCC
Confidence 457788888998764 345789999999888665554321 2249999999999999999999987753 3565
Q ss_pred CCCCCCeEEEEEEecCC
Q 027214 83 DMQCKDKFLLQSTIVPS 99 (226)
Q Consensus 83 ~~~~~dKFlVqs~~~~~ 99 (226)
|. ..-|-+....+|+
T Consensus 98 DR--ESlf~lnv~eIPp 112 (239)
T 4djm_A 98 DR--ESLQWICVKGIPP 112 (239)
T ss_dssp SS--CEEEEEEEEEECC
T ss_pred Cc--eEEEEEEEEecCC
Confidence 53 3445555555554
No 18
>1l4i_A SFAE protein; periplasmic chaperone, immunoglobulin fold; 2.20A {Escherichia coli} SCOP: b.1.11.1 b.7.2.1
Probab=90.36 E-value=2.6 Score=34.60 Aligned_cols=112 Identities=12% Similarity=0.193 Sum_probs=70.9
Q ss_pred EEEecCeeEEeeecCceeEeEEEEEcCCC-CeEEEEEEeCC-----CCcEEEeCCeeeeCCCCeEEEEEE-eccccCCCC
Q 027214 10 ISVHPEELKFIFELEKQGFCDLKVINNTE-HHVAFKVKTTS-----PKKYFVRPNTGVVQPWDSCIIRVT-LQAQRESPP 82 (226)
Q Consensus 10 L~i~P~eL~F~~~~~~~~~~~l~L~N~s~-~~vaFKVKTT~-----p~~Y~VrP~~G~I~P~~s~~I~V~-l~~~~~~p~ 82 (226)
+.+++..+.|+.. .....|+|+|.++ .++.-.+...+ ..-|.|-|+.--|+||+...|.|. ... ...|.
T Consensus 2 v~l~~TRvIy~~~---~k~~sl~l~N~~~~~p~LvQsWv~~~~~~~~~pfivtPPl~rl~p~~~q~lRI~~~~~-~~lP~ 77 (206)
T 1l4i_A 2 VALGATRVIYPEG---QKQVQLAVTNNDDKSSYLIQSWIENAEGKKDARFVITPPLFSMQGKKENTLRIIDATN-GQMPE 77 (206)
T ss_dssp EEESCSEEEEETT---CSEEEEEEEECCTTCEEEEEEEEEETTSCBCSSEEEESSEEEEESSEEEEEEEEECCT-TCSCS
T ss_pred eEeCceEEEEeCC---CcEEEEEEEeCCCCccEEEEEEEecCCCCccCCEEEcCCeEEECCCCceEEEEEecCC-CCCCC
Confidence 5677888888764 3467999999986 77766665432 235999999999999999999998 654 34566
Q ss_pred CCCCCCeEEEEEEecCCCCCCCCCCCCcccccCCCcceEEEeEEEEeCCCC
Q 027214 83 DMQCKDKFLLQSTIVPSNTDVDDLPPDTFNKDSGKTIEECKLRVVYVSPSS 133 (226)
Q Consensus 83 ~~~~~dKFlVqs~~~~~~~~~~d~~~~~f~k~~~~~i~~~kL~v~~~~p~~ 133 (226)
|.. .-|-+..-.+|+.....+ + +..=......+|++-|-+..-
T Consensus 78 DrE--slf~lnv~eIPp~~~~~~---~---~n~lqia~r~riKlFyRP~~l 120 (206)
T 1l4i_A 78 DRE--SLFWVNVKAIPAMDKAKT---G---ENYLQFAIVSRIKLLYRPQGL 120 (206)
T ss_dssp SSC--EEEEEEEEEEECCC--------------CCCEEEEEEEEEEECTTC
T ss_pred Cce--EEEEEEeecCCCCccccc---C---CceEEEEhhheeeEEEecccc
Confidence 532 345555555554211000 0 000122357788888875543
No 19
>4ay0_A Chaperone protein CAF1M; amino acid motifs, bacterial capsules, bacterial proteins, gene expression regulation, molecular chaperones, binding; 1.52A {Yersinia pestis} PDB: 1p5v_A 1p5u_A 1z9s_A 2os7_A 3dos_A 3dpb_A 3dsn_A 4b0m_M 4az8_A 4ayf_A
Probab=89.28 E-value=7.4 Score=32.15 Aligned_cols=112 Identities=9% Similarity=0.070 Sum_probs=69.8
Q ss_pred ccEEEecCeeEEeeecCceeEeEEEEEcCCCCeEEEEEEeCC-------CCcEEEeCCeeeeCCCCeEEEEEEeccccCC
Q 027214 8 QLISVHPEELKFIFELEKQGFCDLKVINNTEHHVAFKVKTTS-------PKKYFVRPNTGVVQPWDSCIIRVTLQAQRES 80 (226)
Q Consensus 8 ~lL~i~P~eL~F~~~~~~~~~~~l~L~N~s~~~vaFKVKTT~-------p~~Y~VrP~~G~I~P~~s~~I~V~l~~~~~~ 80 (226)
.-+.|.-.-+.|+.. .....|+|+|.++.++.-.....+ ..-|.|.|+.--|+||+...|.|..... ..
T Consensus 12 agv~l~~TRvIy~~~---~k~~sl~l~N~~~~p~LvQswv~~~~~~~~~~~pFivtPPl~Rl~p~~~q~lRI~~~~~-~L 87 (218)
T 4ay0_A 12 YGVTIGESRIIYPLD---AAGVMVSVKNTQDYPVLIQSRIYDENKEKESEDPFVVTPPLFRLDAKQQNSLRIAQAGG-VF 87 (218)
T ss_dssp -CEEESCCEEEEETT---CSCEEEEEECCSSSCEEEEEEEECTTSCCCSSCSEEEESSEEEECTTCEEEEEEEECSC-CC
T ss_pred eeEEECceEEEECCC---CcEEEEEEEcCCCCCEEEEEEEecCCCCccccCCEEECCCeEEeCCCCceEEEEEecCC-CC
Confidence 457788888888753 345789999999988766655421 1249999999999999999999998763 45
Q ss_pred CCCCCCCCeEEEEEEecCCCCCCCCCCCCcccccCCCcceEEEeEEEEeCCCC
Q 027214 81 PPDMQCKDKFLLQSTIVPSNTDVDDLPPDTFNKDSGKTIEECKLRVVYVSPSS 133 (226)
Q Consensus 81 p~~~~~~dKFlVqs~~~~~~~~~~d~~~~~f~k~~~~~i~~~kL~v~~~~p~~ 133 (226)
|.|. ..-|-+....+|+..... ... =......+|++-|-+..-
T Consensus 88 P~DR--ESlf~lnv~eIPp~~~~~------~n~--lqia~r~rIKlFyRP~~L 130 (218)
T 4ay0_A 88 PRDK--ESLKWLCVKGIPPKDEDI------WVD--VQFAINNCIKLLVRPNEL 130 (218)
T ss_dssp CSSS--CEEEEEEEEEECC----------------------CEEEEEEECTTC
T ss_pred CcCc--EEEEEEEEEecCCCCccc------cce--eEEEEEEEEEEEEcCccc
Confidence 6552 234666666666532110 000 112245677777765443
No 20
>3gfu_C Chaperone protein FAEE; immunoglobulin like fold, chaperone, fimbrium, immunoglobulin domain, periplasm, plasmid, cell adhesion; 1.99A {Escherichia coli} PDB: 3gew_B 3f65_A 3f6i_A 3f6l_A
Probab=88.42 E-value=3.9 Score=34.12 Aligned_cols=84 Identities=17% Similarity=0.251 Sum_probs=56.1
Q ss_pred EEEecCeeEEeeecCceeEeEEEEEcCCCC-eEEEEEEeC--C----CCcEEEeCCeeeeCCCCeEEEEEEeccccCCCC
Q 027214 10 ISVHPEELKFIFELEKQGFCDLKVINNTEH-HVAFKVKTT--S----PKKYFVRPNTGVVQPWDSCIIRVTLQAQRESPP 82 (226)
Q Consensus 10 L~i~P~eL~F~~~~~~~~~~~l~L~N~s~~-~vaFKVKTT--~----p~~Y~VrP~~G~I~P~~s~~I~V~l~~~~~~p~ 82 (226)
+.++...+.|+.. .....|+|+|.++. ++.-.+... . ..-|.|.|+.--|+||+...|.|..... ..|.
T Consensus 2 ~~l~~TRvIy~~~---~k~~sl~l~N~~~~~p~LvQsWid~~~~~~~~~pfivtPPlfRlep~~~q~lRIi~~~~-~LP~ 77 (224)
T 3gfu_C 2 LAVDQTRYIFRGD---KDALTITVTNNDKERTFGGQAWVDNIVEKDTRPTFVVTPSFFKVKPNGQQTLRIIMASD-HLPK 77 (224)
T ss_dssp EECSCSEEEEETT---SSCEEEEEEECCSSCCEEEEEEEEESSCCSCSCSEEEESSEEEECTTCEEEEEEEECSC-CCCS
T ss_pred ccccceEEEEeCC---CceEEEEEEeCCCCccEEEEEEEecCCCCcccCCEEEcCCeEEECCCCceEEEEEECCC-CCCC
Confidence 4556667888753 34578999999875 543333322 1 1249999999999999999999987753 3555
Q ss_pred CCCCCCeEEEEEEecCC
Q 027214 83 DMQCKDKFLLQSTIVPS 99 (226)
Q Consensus 83 ~~~~~dKFlVqs~~~~~ 99 (226)
|. ..-|-+..-.+|+
T Consensus 78 DR--ESlf~lnv~eIPp 92 (224)
T 3gfu_C 78 DK--ESVYWLNLQDIPP 92 (224)
T ss_dssp SS--CEEEEEEEEEECC
T ss_pred Cc--eEEEEEEeecCCC
Confidence 53 3445555555554
No 21
>1yew_A Particulate methane monooxygenase, B subunit; membrane protein, beta barrel, oxidoreductase; 2.80A {Methylococcus capsulatus} PDB: 3rgb_A
Probab=87.75 E-value=3.4 Score=37.03 Aligned_cols=67 Identities=15% Similarity=0.188 Sum_probs=50.7
Q ss_pred cEEEecCeeEEeeecCceeEeEEEEEcCCCCeEEEEEEeCCCCcEEE----------------------eCCeeeeCCCC
Q 027214 9 LISVHPEELKFIFELEKQGFCDLKVINNTEHHVAFKVKTTSPKKYFV----------------------RPNTGVVQPWD 66 (226)
Q Consensus 9 lL~i~P~eL~F~~~~~~~~~~~l~L~N~s~~~vaFKVKTT~p~~Y~V----------------------rP~~G~I~P~~ 66 (226)
.+.++...-.|.- .++..+-+++++|.++.+|-..==+|+.-+|.- .|+ .=|.||+
T Consensus 249 ~V~~~v~~A~Y~v-pgR~l~~~~~VtN~g~~pvrlgeF~tA~vrFln~~~~~~~~~~P~~lla~~gL~vsd~-~pI~PGE 326 (382)
T 1yew_A 249 TVSVKVEDATYRV-PGRAMRMKLTITNHGNSPIRLGEFYTASVRFLDSDVYKDTTGYPEDLLAEDGLSVSDN-SPLAPGE 326 (382)
T ss_dssp SEEEEEEEEEEES-SCSEEEEEEEEEECSSSCEEEEEEECSSCEEECTTTCCCCSCCCGGGEETTCEEESCC-SCBCTTC
T ss_pred ceEEEeeccEEec-CCcEEEEEEEEEcCCCCceEeeeEEeccEEEeCCcccccCCCChHHhhccCCceeCCC-CCcCCCc
Confidence 3455555556665 477889999999999999999977888777743 232 2389999
Q ss_pred eEEEEEEeccc
Q 027214 67 SCIIRVTLQAQ 77 (226)
Q Consensus 67 s~~I~V~l~~~ 77 (226)
+.+|.|+.+..
T Consensus 327 Tr~~~v~a~da 337 (382)
T 1yew_A 327 TRTVDVTASDA 337 (382)
T ss_dssp EEEEEEEEECH
T ss_pred eeEEEEEeehH
Confidence 99999998863
No 22
>2r39_A FIXG-related protein; structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG, iron, iron-sulfur; 2.02A {Vibrio parahaemolyticus}
Probab=86.85 E-value=4 Score=30.14 Aligned_cols=51 Identities=22% Similarity=0.217 Sum_probs=39.8
Q ss_pred eEeEEEEEcCCCCeEEEEEEeCCCCcEEE-eCCeeeeCCCCeEEEEEEeccc
Q 027214 27 GFCDLKVINNTEHHVAFKVKTTSPKKYFV-RPNTGVVQPWDSCIIRVTLQAQ 77 (226)
Q Consensus 27 ~~~~l~L~N~s~~~vaFKVKTT~p~~Y~V-rP~~G~I~P~~s~~I~V~l~~~ 77 (226)
-...|+|.|.+.++..|.++.....-+.+ .|..=.|+||+...+.|.+...
T Consensus 33 N~Ytlki~Nkt~~~~~~~l~v~g~~~l~~~g~~~i~v~~g~~~~~~v~v~~~ 84 (118)
T 2r39_A 33 NTYTLKVINKTQQVQEYNLDVKGLNDVSWYGKQTIQVEPGEVLNLPMSLGAD 84 (118)
T ss_dssp EEEEEEEEECSSSCEEEEEEEESCSSCEEESCCEEEECTTCEEEEEEEEEEC
T ss_pred EEEEEEEEECCCCCEEEEEEEeCCcccEEeCCCcEEECCCCEEEEEEEEEEC
Confidence 36799999999999999999887544554 4665688899988887777653
No 23
>3rfr_A PMOB; membrane, oxidoreductase; 2.68A {Methylocystis SP} PDB: 3chx_A
Probab=86.71 E-value=3.4 Score=37.45 Aligned_cols=68 Identities=18% Similarity=0.194 Sum_probs=52.8
Q ss_pred CccEEEecCeeEEeeecCceeEeEEEEEcCCCCeEEEEEEeCCCCcEEE---------------------eCCeeeeCCC
Q 027214 7 NQLISVHPEELKFIFELEKQGFCDLKVINNTEHHVAFKVKTTSPKKYFV---------------------RPNTGVVQPW 65 (226)
Q Consensus 7 ~~lL~i~P~eL~F~~~~~~~~~~~l~L~N~s~~~vaFKVKTT~p~~Y~V---------------------rP~~G~I~P~ 65 (226)
...+.++-..-.|.- .++..+-.++++|+++.+|-+.==+|+.-+|.= .|+ =|.||
T Consensus 281 ~~~V~~~v~~A~Y~v-pgR~l~~~~~VtN~g~~pvrlgeF~tA~vrFlnp~v~~~~~~~p~~l~a~~GL~s~~--pI~PG 357 (419)
T 3rfr_A 281 KEQVTTELNGGVYKV-PGRELTINVKVKNGTSQPVRLGEYTAAGLRFLNPTVFTQKPDFPDYLLADRGLSNDD--VIAPG 357 (419)
T ss_dssp SCCCEEEEEEEEEES-SSSEEEEEEEEECCSSSCBEEEEEECSSCEEECTTTCSSCCCCCTTTEESCCCCCCC--CBCTT
T ss_pred CCceEEEEeceEEec-CCcEEEEEEEEecCCCCceEEeeEEEccEEEeCcccccCCCCCchhhhhccCCCCCC--CcCCC
Confidence 345666666667775 477889999999999999999877787777751 133 59999
Q ss_pred CeEEEEEEeccc
Q 027214 66 DSCIIRVTLQAQ 77 (226)
Q Consensus 66 ~s~~I~V~l~~~ 77 (226)
++.+|.|+.+..
T Consensus 358 ETrt~~V~a~da 369 (419)
T 3rfr_A 358 ESKEIVVKIQDA 369 (419)
T ss_dssp CEEEEEEEEECH
T ss_pred cceEEEEEeehH
Confidence 999999998863
No 24
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=86.57 E-value=1.6 Score=25.51 Aligned_cols=28 Identities=7% Similarity=0.116 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027214 156 LQRLKDERDAAVRQTQLLQQDLDMLKRR 183 (226)
Q Consensus 156 i~~L~eE~~~~~~en~~L~~el~~lr~~ 183 (226)
++.|.+....+..+|..|++|+.+||..
T Consensus 2 MnQLEdKvEeLl~~~~~Le~EV~RLk~l 29 (33)
T 3c3g_A 2 MKXIEXKLXEIXSKXYHXENXLARIKXL 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3567888888999999999999999864
No 25
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=86.54 E-value=1.1 Score=26.25 Aligned_cols=28 Identities=14% Similarity=0.217 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027214 157 QRLKDERDAAVRQTQLLQQDLDMLKRRG 184 (226)
Q Consensus 157 ~~L~eE~~~~~~en~~L~~el~~lr~~~ 184 (226)
..|.+....+..+|..|++|..+||...
T Consensus 3 ~QLE~kVEeLl~~n~~Le~EV~RLk~Ll 30 (33)
T 3m48_A 3 AQLEAKVEELLSKNWNLENEVARLKKLV 30 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 4677888899999999999999998653
No 26
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=85.16 E-value=2 Score=25.19 Aligned_cols=28 Identities=0% Similarity=0.130 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027214 156 LQRLKDERDAAVRQTQLLQQDLDMLKRR 183 (226)
Q Consensus 156 i~~L~eE~~~~~~en~~L~~el~~lr~~ 183 (226)
+..|.+....+..+|..|++|..+||..
T Consensus 3 MnQLEdKVEeLl~~~~~Le~EV~RLk~l 30 (34)
T 3c3f_A 3 MXQIEXKLEXILSXLYHXENEXARIXKL 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 4567888888999999999999999865
No 27
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=84.59 E-value=1.6 Score=25.61 Aligned_cols=29 Identities=10% Similarity=0.310 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027214 156 LQRLKDERDAAVRQTQLLQQDLDMLKRRG 184 (226)
Q Consensus 156 i~~L~eE~~~~~~en~~L~~el~~lr~~~ 184 (226)
++.|.++...+..+|..|++|+.+||...
T Consensus 3 M~QLEdKVEeLl~~n~~Le~EV~RLk~LL 31 (34)
T 1uo4_A 3 MKQIEDKGEEILSKLYHIENELARIKKLL 31 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 35678888899999999999999998653
No 28
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=84.01 E-value=2.2 Score=25.03 Aligned_cols=29 Identities=14% Similarity=0.237 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027214 156 LQRLKDERDAAVRQTQLLQQDLDMLKRRG 184 (226)
Q Consensus 156 i~~L~eE~~~~~~en~~L~~el~~lr~~~ 184 (226)
+..|.+....+..+|..|++|..+||...
T Consensus 3 MnQLE~kVEeLl~~n~~Le~eV~rLk~ll 31 (34)
T 2oxj_A 3 MXQLEXKVXELLXKNXHLEXEVXRLKXLV 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 45677888889999999999999988643
No 29
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=82.23 E-value=2.3 Score=24.96 Aligned_cols=29 Identities=10% Similarity=0.284 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027214 156 LQRLKDERDAAVRQTQLLQQDLDMLKRRG 184 (226)
Q Consensus 156 i~~L~eE~~~~~~en~~L~~el~~lr~~~ 184 (226)
++.|.+....+..++..|++|+.+||...
T Consensus 3 MnQLEdKvEeLl~~~~~L~~EV~RLk~lL 31 (34)
T 2bni_A 3 MKQIEDKLEEILSKGHHICNELARIKKLL 31 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHccHHHHHHHHHHHHHh
Confidence 35678888889999999999999998653
No 30
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=81.62 E-value=3.3 Score=24.60 Aligned_cols=29 Identities=17% Similarity=0.296 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027214 156 LQRLKDERDAAVRQTQLLQQDLDMLKRRG 184 (226)
Q Consensus 156 i~~L~eE~~~~~~en~~L~~el~~lr~~~ 184 (226)
+..|.+....+..++..|++|..+||...
T Consensus 3 MnQLE~KVEeLl~~~~~Le~eV~RLk~ll 31 (36)
T 1kd8_B 3 VKQLKAKVEELKSKLWHLKNKVARLKKKN 31 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 45678888889999999999999998653
No 31
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=80.65 E-value=3.9 Score=23.82 Aligned_cols=28 Identities=7% Similarity=0.154 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027214 156 LQRLKDERDAAVRQTQLLQQDLDMLKRR 183 (226)
Q Consensus 156 i~~L~eE~~~~~~en~~L~~el~~lr~~ 183 (226)
+..|.+....+..++..|++|..+||..
T Consensus 2 MnQLEdKVEell~~~~~le~EV~Rl~~l 29 (33)
T 2wq1_A 2 MKQLEDKIEENTSKIYHNTNEIARNTKL 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3567788888999999999999998865
No 32
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=80.04 E-value=3 Score=24.75 Aligned_cols=28 Identities=14% Similarity=0.304 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027214 156 LQRLKDERDAAVRQTQLLQQDLDMLKRR 183 (226)
Q Consensus 156 i~~L~eE~~~~~~en~~L~~el~~lr~~ 183 (226)
+..|.++...+..++..|++|..+||..
T Consensus 3 MnQLE~kVEeLl~~~~~Le~EV~RL~~l 30 (36)
T 1kd8_A 3 VKQLEAEVEEIESEVWHLENEVARLEKE 30 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3567788888999999999999998865
No 33
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=78.73 E-value=2.6 Score=23.93 Aligned_cols=28 Identities=29% Similarity=0.357 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027214 156 LQRLKDERDAAVRQTQLLQQDLDMLKRR 183 (226)
Q Consensus 156 i~~L~eE~~~~~~en~~L~~el~~lr~~ 183 (226)
+++|.|++..+..-.++||+.+++|...
T Consensus 1 isrlee~~r~l~~ivq~lq~r~drle~t 28 (32)
T 2akf_A 1 VSRLEEDVRNLNAIVQKLQERLDRLEET 28 (32)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578899988888888999998888654
No 34
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=77.89 E-value=3.9 Score=23.94 Aligned_cols=28 Identities=14% Similarity=0.227 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027214 156 LQRLKDERDAAVRQTQLLQQDLDMLKRR 183 (226)
Q Consensus 156 i~~L~eE~~~~~~en~~L~~el~~lr~~ 183 (226)
+..|.+....+..+|..|++|..+||..
T Consensus 3 MnQLEdkVEeLl~~~~~Le~eV~RL~~l 30 (34)
T 2hy6_A 3 VKQLADAVEELASANYHLANAVARLAKA 30 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3567788888999999999999999864
No 35
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=76.72 E-value=5.9 Score=23.23 Aligned_cols=28 Identities=11% Similarity=0.186 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027214 156 LQRLKDERDAAVRQTQLLQQDLDMLKRR 183 (226)
Q Consensus 156 i~~L~eE~~~~~~en~~L~~el~~lr~~ 183 (226)
+..|.++...+..++..|++|+.+||..
T Consensus 3 MnQledKvEel~~~~~~l~nEv~Rl~~l 30 (34)
T 2r2v_A 3 LKQVADKLEEVASKLYHNANELARVAKL 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3567778888889999999999998864
No 36
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=76.42 E-value=3.4 Score=26.96 Aligned_cols=33 Identities=15% Similarity=0.357 Sum_probs=26.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027214 150 PDANSALQRLKDERDAAVRQTQLLQQDLDMLKR 182 (226)
Q Consensus 150 ~e~~~~i~~L~eE~~~~~~en~~L~~el~~lr~ 182 (226)
.+....+..+.++...+.+||..|++++..++.
T Consensus 23 ~EVD~FLd~v~~~~~~l~~e~~~L~~~~~~l~~ 55 (57)
T 2wuj_A 23 DEVNEFLAQVRKDYEIVLRKKTELEAKVNELDE 55 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356678889999999999999999999887764
No 37
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=74.31 E-value=6.3 Score=26.23 Aligned_cols=30 Identities=17% Similarity=0.325 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027214 155 ALQRLKDERDAAVRQTQLLQQDLDMLKRRG 184 (226)
Q Consensus 155 ~i~~L~eE~~~~~~en~~L~~el~~lr~~~ 184 (226)
.+..|..+...|..+|..|..++..|+...
T Consensus 31 ~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l 60 (63)
T 2dgc_A 31 RMKQLEDKVEELLSKNYHLENEVARLKKLV 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567889999999999999999999998754
No 38
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=73.62 E-value=6.9 Score=27.28 Aligned_cols=33 Identities=33% Similarity=0.464 Sum_probs=26.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027214 151 DANSALQRLKDERDAAVRQTQLLQQDLDMLKRR 183 (226)
Q Consensus 151 e~~~~i~~L~eE~~~~~~en~~L~~el~~lr~~ 183 (226)
.|...|..|+++...+.+++++|+.+...|+++
T Consensus 44 kA~~yI~~L~~~~~~l~~e~~~L~~e~~~L~~~ 76 (80)
T 1nlw_A 44 KAKLHIKKLEDSDRKAVHQIDQLQREQRHLKRQ 76 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456678888888888888888888888777765
No 39
>1scf_A Stem cell factor; steel factor, KIT ligand, MAST cell growth factor, hormone/growth factor complex; HET: 1PE; 2.20A {Homo sapiens} SCOP: a.26.1.2 PDB: 1exz_A 2e9w_C* 2o27_A 2o26_A
Probab=73.49 E-value=0.69 Score=39.33 Aligned_cols=25 Identities=16% Similarity=0.371 Sum_probs=0.0
Q ss_pred CchHHHHHHHHHHHHHHHHHHhhhc
Q 027214 191 GFSLMFAAFVGLIGIMVGLILNLLL 215 (226)
Q Consensus 191 g~s~~~v~lv~lla~~lG~~l~~~~ 215 (226)
+..+..++|.+|++++|||++|.+.
T Consensus 212 slq~~~~~l~al~slvigf~~ga~~ 236 (273)
T 1scf_A 212 SLHWAAMALPALFSLIIGFAFGALY 236 (273)
T ss_dssp -------------------------
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHh
Confidence 3445667899999999999999885
No 40
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=73.41 E-value=6.6 Score=25.43 Aligned_cols=29 Identities=21% Similarity=0.256 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027214 155 ALQRLKDERDAAVRQTQLLQQDLDMLKRR 183 (226)
Q Consensus 155 ~i~~L~eE~~~~~~en~~L~~el~~lr~~ 183 (226)
.+..|..+...|..||..|.+++..|+..
T Consensus 23 ~~~~LE~~v~~L~~eN~~L~~~~~~L~~~ 51 (55)
T 1dh3_A 23 YVKSLENRVAVLENQNKTLIEELKALKDL 51 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57889999999999999999999888764
No 41
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=73.28 E-value=9.7 Score=21.50 Aligned_cols=25 Identities=28% Similarity=0.331 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 027214 157 QRLKDERDAAVRQTQLLQQDLDMLK 181 (226)
Q Consensus 157 ~~L~eE~~~~~~en~~L~~el~~lr 181 (226)
..|..|+..+++|+..|+=|+..|+
T Consensus 5 aalkqeiaalkkeiaalkfeiaalk 29 (33)
T 4dzn_A 5 AALKQEIAALKKEIAALKFEIAALK 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555444
No 42
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=72.37 E-value=7.6 Score=27.68 Aligned_cols=29 Identities=17% Similarity=0.276 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027214 156 LQRLKDERDAAVRQTQLLQQDLDMLKRRG 184 (226)
Q Consensus 156 i~~L~eE~~~~~~en~~L~~el~~lr~~~ 184 (226)
+..|..|...|+.+++.|++|+..||...
T Consensus 45 ~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll 73 (87)
T 1hjb_A 45 VLELTAENERLQKKVEQLSRELSTLRNLF 73 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666667777777777777666543
No 43
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=72.01 E-value=7.9 Score=26.82 Aligned_cols=34 Identities=12% Similarity=0.213 Sum_probs=26.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027214 151 DANSALQRLKDERDAAVRQTQLLQQDLDMLKRRG 184 (226)
Q Consensus 151 e~~~~i~~L~eE~~~~~~en~~L~~el~~lr~~~ 184 (226)
.|...|..|+++...+.++.+.|+++...|+++.
T Consensus 44 ~Ai~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l 77 (83)
T 1nkp_B 44 KATEYIQYMRRKNHTHQQDIDDLKRQNALLEQQV 77 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566788888888888888888888887777654
No 44
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=71.18 E-value=8.7 Score=24.73 Aligned_cols=29 Identities=14% Similarity=0.178 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027214 155 ALQRLKDERDAAVRQTQLLQQDLDMLKRR 183 (226)
Q Consensus 155 ~i~~L~eE~~~~~~en~~L~~el~~lr~~ 183 (226)
.+..|+.|+..+++++..|+++.+.++++
T Consensus 20 d~eaLk~E~~eLk~k~~~L~~~~~el~~~ 48 (53)
T 2yy0_A 20 EIELLRLELAEMKEKYEAIVEENKKLKAK 48 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44577777777777777777777777655
No 45
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=70.25 E-value=8.1 Score=22.73 Aligned_cols=26 Identities=23% Similarity=0.281 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027214 152 ANSALQRLKDERDAAVRQTQLLQQDL 177 (226)
Q Consensus 152 ~~~~i~~L~eE~~~~~~en~~L~~el 177 (226)
++......+.+++.++.||..|++++
T Consensus 5 mRrKn~a~qqDIddlkrQN~~Le~Qi 30 (34)
T 1a93_B 5 MRRKNDTHQQDIDDLKRQNALLEQQV 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhHhhHhhHHHHHHHHHHHHHHH
Confidence 34445677888899999999999886
No 46
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=68.73 E-value=12 Score=21.16 Aligned_cols=27 Identities=22% Similarity=0.324 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027214 156 LQRLKDERDAAVRQTQLLQQDLDMLKR 182 (226)
Q Consensus 156 i~~L~eE~~~~~~en~~L~~el~~lr~ 182 (226)
+..|..|..++..+|-+|+||...|..
T Consensus 3 vaqlekevaqaeaenyqleqevaqleh 29 (33)
T 1fmh_A 3 VAQLEKEVAQAEAENYQLEQEVAQLEH 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 346778888889999999999887754
No 47
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=68.39 E-value=5.2 Score=29.49 Aligned_cols=28 Identities=14% Similarity=0.369 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027214 156 LQRLKDERDAAVRQTQLLQQDLDMLKRR 183 (226)
Q Consensus 156 i~~L~eE~~~~~~en~~L~~el~~lr~~ 183 (226)
++.|++++..+++|+.++++|++.|+..
T Consensus 9 ~~~l~~~~~~l~~~i~~lkeel~~L~~~ 36 (109)
T 2wg5_A 9 MKQLEDKVEELLSKNYHLENEVARLRSP 36 (109)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 5689999999999999999999999864
No 48
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=67.62 E-value=13 Score=24.28 Aligned_cols=29 Identities=17% Similarity=0.288 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027214 155 ALQRLKDERDAAVRQTQLLQQDLDMLKRR 183 (226)
Q Consensus 155 ~i~~L~eE~~~~~~en~~L~~el~~lr~~ 183 (226)
.+..|..+...+..+|..|+.++..|+..
T Consensus 23 ~~~~Le~~~~~L~~~n~~L~~~i~~L~~e 51 (61)
T 1t2k_D 23 WVQSLEKKAEDLSSLNGQLQSEVTLLRNE 51 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666666665555543
No 49
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=67.58 E-value=9.2 Score=27.91 Aligned_cols=30 Identities=13% Similarity=0.175 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027214 155 ALQRLKDERDAAVRQTQLLQQDLDMLKRRG 184 (226)
Q Consensus 155 ~i~~L~eE~~~~~~en~~L~~el~~lr~~~ 184 (226)
.|..|.+|+.+++.||+.|.+|-...|+..
T Consensus 66 ~v~eLe~everL~~ENq~L~~e~~~~~~~~ 95 (104)
T 3s9g_A 66 RVRELELELDRLRAENLQLLTENELHRQQE 95 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 456777888888888888888887777663
No 50
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=67.20 E-value=11 Score=26.28 Aligned_cols=27 Identities=19% Similarity=0.338 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027214 157 QRLKDERDAAVRQTQLLQQDLDMLKRR 183 (226)
Q Consensus 157 ~~L~eE~~~~~~en~~L~~el~~lr~~ 183 (226)
..|..|...|..++..|++|+..||..
T Consensus 46 ~~L~~eN~~L~~~v~~L~~E~~~Lr~l 72 (78)
T 1gu4_A 46 LELTAENERLQKKVEQLSRELSTLRNL 72 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666666666666666666643
No 51
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=66.55 E-value=12 Score=24.64 Aligned_cols=29 Identities=21% Similarity=0.271 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027214 155 ALQRLKDERDAAVRQTQLLQQDLDMLKRR 183 (226)
Q Consensus 155 ~i~~L~eE~~~~~~en~~L~~el~~lr~~ 183 (226)
.+..|..+...+..+|..|+.++..|+..
T Consensus 24 ~~~~Le~~v~~L~~~n~~L~~ei~~L~~e 52 (63)
T 2wt7_A 24 LTDTLQAETDQLEDEKSALQTEIANLLKE 52 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777777777777776654
No 52
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=64.54 E-value=16 Score=24.20 Aligned_cols=27 Identities=19% Similarity=0.286 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027214 156 LQRLKDERDAAVRQTQLLQQDLDMLKR 182 (226)
Q Consensus 156 i~~L~eE~~~~~~en~~L~~el~~lr~ 182 (226)
+..|..+...+.++|..|+.++..|+.
T Consensus 25 ~~~le~~~~~L~~~N~~L~~~i~~L~~ 51 (63)
T 1ci6_A 25 QEALTGECKELEKKNEALKERADSLAK 51 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555555543
No 53
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=63.47 E-value=15 Score=24.01 Aligned_cols=29 Identities=21% Similarity=0.345 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027214 155 ALQRLKDERDAAVRQTQLLQQDLDMLKRR 183 (226)
Q Consensus 155 ~i~~L~eE~~~~~~en~~L~~el~~lr~~ 183 (226)
.+..|..+...+..+|..|+.++..|+..
T Consensus 23 ~~~~Le~~v~~L~~~n~~L~~~v~~L~~e 51 (62)
T 1jnm_A 23 RIARLEEKVKTLKAQNSELASTANMLREQ 51 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777777777777777654
No 54
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=62.68 E-value=16 Score=23.76 Aligned_cols=32 Identities=16% Similarity=0.213 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027214 152 ANSALQRLKDERDAAVRQTQLLQQDLDMLKRR 183 (226)
Q Consensus 152 ~~~~i~~L~eE~~~~~~en~~L~~el~~lr~~ 183 (226)
....+..|..+...+..++..|++|+..|+..
T Consensus 27 Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~ 58 (61)
T 1t2k_D 27 LEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556788888888999999999998888754
No 55
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=62.62 E-value=9.9 Score=20.70 Aligned_cols=16 Identities=19% Similarity=0.299 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 027214 165 AAVRQTQLLQQDLDML 180 (226)
Q Consensus 165 ~~~~en~~L~~el~~l 180 (226)
++++.|.+|+||+..|
T Consensus 4 rlkqknarlkqeiaal 19 (28)
T 3ra3_B 4 RLKQKNARLKQEIAAL 19 (28)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHH
Confidence 3445555555555443
No 56
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=60.61 E-value=13 Score=23.83 Aligned_cols=23 Identities=26% Similarity=0.369 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 027214 158 RLKDERDAAVRQTQLLQQDLDML 180 (226)
Q Consensus 158 ~L~eE~~~~~~en~~L~~el~~l 180 (226)
+|.+.+.++++|+.+|+++++.|
T Consensus 27 rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 27 KLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 45555566666666666666554
No 57
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=59.64 E-value=19 Score=25.33 Aligned_cols=28 Identities=18% Similarity=0.228 Sum_probs=15.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027214 151 DANSALQRLKDERDAAVRQTQLLQQDLD 178 (226)
Q Consensus 151 e~~~~i~~L~eE~~~~~~en~~L~~el~ 178 (226)
.|...|..|+-|+..++++|..|.++..
T Consensus 17 ~avdtI~lLqmEieELKekN~~L~~e~~ 44 (81)
T 2jee_A 17 QAIDTITLLQMEIEELKEKNNSLSQEVQ 44 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666666666655544443
No 58
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=58.73 E-value=10 Score=24.84 Aligned_cols=33 Identities=15% Similarity=0.350 Sum_probs=25.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027214 151 DANSALQRLKDERDAAVRQTQLLQQDLDMLKRR 183 (226)
Q Consensus 151 e~~~~i~~L~eE~~~~~~en~~L~~el~~lr~~ 183 (226)
+....+..|..+...+..++..|++|+..|+..
T Consensus 26 ~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~~ 58 (62)
T 1jnm_A 26 RLEEKVKTLKAQNSELASTANMLREQVAQLKQK 58 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567788999999999999999998887754
No 59
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=58.65 E-value=14 Score=29.98 Aligned_cols=26 Identities=8% Similarity=0.216 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027214 156 LQRLKDERDAAVRQTQLLQQDLDMLK 181 (226)
Q Consensus 156 i~~L~eE~~~~~~en~~L~~el~~lr 181 (226)
+.+|+++..++++||++|++|-+...
T Consensus 154 ~~~L~~~n~~LqkeNeRL~~E~n~~l 179 (184)
T 3w03_C 154 IAENQAKNEHLQKENERLLRDWNDVQ 179 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777777777665443
No 60
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=58.46 E-value=14 Score=21.94 Aligned_cols=20 Identities=10% Similarity=0.192 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 027214 155 ALQRLKDERDAAVRQTQLLQ 174 (226)
Q Consensus 155 ~i~~L~eE~~~~~~en~~L~ 174 (226)
.|...++|+.+++++|..|+
T Consensus 15 ~ie~KdeeIa~Lk~eN~eL~ 34 (37)
T 1t6f_A 15 EIEQKDNEIARLKKENKELA 34 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHH
Confidence 44555566666666666654
No 61
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=58.45 E-value=16 Score=19.68 Aligned_cols=23 Identities=26% Similarity=0.372 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 027214 158 RLKDERDAAVRQTQLLQQDLDML 180 (226)
Q Consensus 158 ~L~eE~~~~~~en~~L~~el~~l 180 (226)
.|.+|.-+++-|.+.|++|...|
T Consensus 4 qlkdevgelkgevralkdevkdl 26 (27)
T 3v86_A 4 QLKDEVGELKGEVRALKDEVKDL 26 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHhHHHHHHHHHhcc
Confidence 46667777777777777776544
No 62
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=58.44 E-value=21 Score=25.56 Aligned_cols=27 Identities=15% Similarity=0.230 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027214 157 QRLKDERDAAVRQTQLLQQDLDMLKRR 183 (226)
Q Consensus 157 ~~L~eE~~~~~~en~~L~~el~~lr~~ 183 (226)
..|..|+..+.+|+..+..|++.++++
T Consensus 58 ~~L~~e~~~L~~e~~~~~~e~d~~k~k 84 (90)
T 2wt7_B 58 TQLIQQVEQLKQEVSRLARERDAYKVK 84 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555566666666666665544
No 63
>3hn9_A Lamin-B1; structural genomics, structural genomics consortium, SGC, acetylation, chromosomal rearrangement, coiled coil, intermediate filament; 2.00A {Homo sapiens} PDB: 3umn_A 2kpw_A
Probab=57.98 E-value=15 Score=27.54 Aligned_cols=42 Identities=12% Similarity=0.133 Sum_probs=30.4
Q ss_pred eEEEEEcCCCCeEE---EEEEeCCCC---cEEEeCCeeeeCCCCeEEEE
Q 027214 29 CDLKVINNTEHHVA---FKVKTTSPK---KYFVRPNTGVVQPWDSCIIR 71 (226)
Q Consensus 29 ~~l~L~N~s~~~va---FKVKTT~p~---~Y~VrP~~G~I~P~~s~~I~ 71 (226)
..++|.|.+++.+. |+++-...+ .|.. |..=+|+||++++|-
T Consensus 25 ~fV~L~N~s~~~~~L~gW~l~r~v~~~~~~y~F-p~~~~L~pg~~vtVw 72 (123)
T 3hn9_A 25 KFIRLKNTSEQDQPMGGWEMIRKIGDTSVSYKY-TSRYVLKAGQTVTIW 72 (123)
T ss_dssp SEEEEEECSSSCEECTTCEEEEEETTEEEEEEC-CTTCEECTTCEEEEE
T ss_pred CEEEEEECCCCceecCCcEEEEEeCCCceEEEc-CCCcEECCCCEEEEE
Confidence 47999999887775 778765443 4554 555589999997764
No 64
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=57.48 E-value=25 Score=23.07 Aligned_cols=32 Identities=19% Similarity=0.223 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027214 152 ANSALQRLKDERDAAVRQTQLLQQDLDMLKRR 183 (226)
Q Consensus 152 ~~~~i~~L~eE~~~~~~en~~L~~el~~lr~~ 183 (226)
....+..|..+...|..++..|++|+..|+..
T Consensus 28 Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~ 59 (63)
T 2wt7_A 28 LQAETDQLEDEKSALQTEIANLLKEKEKLEFI 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556788888888888888888888877754
No 65
>3idu_A Uncharacterized protein; all beta-protein, structural genomics, PSI-2, protein structure initiative; 1.70A {Pyrococcus furiosus} PDB: 2kl6_A
Probab=57.44 E-value=36 Score=25.56 Aligned_cols=68 Identities=12% Similarity=0.127 Sum_probs=50.3
Q ss_pred CceeEeEEEEEcCCCC-eEEEEEEeCCCCcEEEeCCeeeeCCCCeEEEEEEeccccCCCCCCCCCCeEEEEEEecCCC
Q 027214 24 EKQGFCDLKVINNTEH-HVAFKVKTTSPKKYFVRPNTGVVQPWDSCIIRVTLQAQRESPPDMQCKDKFLLQSTIVPSN 100 (226)
Q Consensus 24 ~~~~~~~l~L~N~s~~-~vaFKVKTT~p~~Y~VrP~~G~I~P~~s~~I~V~l~~~~~~p~~~~~~dKFlVqs~~~~~~ 100 (226)
++.++..++++|.+.. -=+|+|+-...+...-.-..+ |.||++..|.+...+. . ...+-|...+-+.+
T Consensus 32 G~~~ti~vtV~N~G~~~a~~~~V~lyvng~~v~t~~v~-La~G~s~tv~f~~~~~-----~---~G~~~v~AvVD~~n 100 (127)
T 3idu_A 32 NKLAEYEVHVKNLGGIGVPSTKVRVYINGTLYKNWTVS-LGPKEEKVLTFNWTPT-----Q---EGMYRINATVDEEN 100 (127)
T ss_dssp TCCEEEEEEEEECSSSCEEEEEEEEEETTEEEEEEEEE-ECTTCEEEEEEEECCS-----S---CEEEEEEEEESTTC
T ss_pred CCEEEEEEEEEECCCCccCCcEEEEEECCEEEeeEEec-cCCCCeEEEEEEEEcC-----C---CcEEEEEEEEcCCC
Confidence 6678999999999864 468999887777765554444 9999999999997652 1 34567777776665
No 66
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=57.43 E-value=21 Score=24.75 Aligned_cols=31 Identities=13% Similarity=0.116 Sum_probs=23.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027214 151 DANSALQRLKDERDAAVRQTQLLQQDLDMLK 181 (226)
Q Consensus 151 e~~~~i~~L~eE~~~~~~en~~L~~el~~lr 181 (226)
+|...|..|+.+...+.+++..|++++....
T Consensus 47 ~Ai~YI~~Lq~~~~~L~~e~~~L~~~~~~~~ 77 (82)
T 1am9_A 47 KAIDYIRFLQHSNQKLKQENLSLRTAVHKSK 77 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4556778888888888888888888765543
No 67
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=55.59 E-value=17 Score=25.56 Aligned_cols=31 Identities=19% Similarity=0.350 Sum_probs=16.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027214 151 DANSALQRLKDERDAAVRQTQLLQQDLDMLK 181 (226)
Q Consensus 151 e~~~~i~~L~eE~~~~~~en~~L~~el~~lr 181 (226)
.|...|..|+++...+..+...|+++-..|+
T Consensus 49 ~A~~YI~~L~~~~~~l~~~~~~L~~~n~~L~ 79 (88)
T 1nkp_A 49 KATAYILSVQAEEQKLISEEDLLRKRREQLK 79 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666555544444444444443
No 68
>2ww9_B Protein transport protein SSS1; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_B
Probab=55.47 E-value=13 Score=26.15 Aligned_cols=11 Identities=18% Similarity=0.467 Sum_probs=8.4
Q ss_pred HHHHHHHhhhc
Q 027214 205 IMVGLILNLLL 215 (226)
Q Consensus 205 ~~lG~~l~~~~ 215 (226)
-+|||++++++
T Consensus 62 G~IGfiIkLI~ 72 (80)
T 2ww9_B 62 GIIGYAIKLIH 72 (80)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 36789988875
No 69
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=55.44 E-value=25 Score=23.16 Aligned_cols=31 Identities=16% Similarity=0.315 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027214 152 ANSALQRLKDERDAAVRQTQLLQQDLDMLKR 182 (226)
Q Consensus 152 ~~~~i~~L~eE~~~~~~en~~L~~el~~lr~ 182 (226)
....+..|..+...|..++..|+.|...|+.
T Consensus 28 le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ 58 (63)
T 1ci6_A 28 LTGECKELEKKNEALKERADSLAKEIQYLKD 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456678888888899999999998888775
No 70
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=54.76 E-value=24 Score=25.74 Aligned_cols=27 Identities=15% Similarity=0.208 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027214 155 ALQRLKDERDAAVRQTQLLQQDLDMLK 181 (226)
Q Consensus 155 ~i~~L~eE~~~~~~en~~L~~el~~lr 181 (226)
.+..|+.+++.|..|+.+|+++.+.|.
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE 39 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLE 39 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777777777777777777766554
No 71
>1rh5_B Preprotein translocase SECE subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.28.1 PDB: 1rhz_B 2yxq_B 2yxr_B 3dkn_B
Probab=53.89 E-value=9.3 Score=26.40 Aligned_cols=15 Identities=13% Similarity=0.264 Sum_probs=9.5
Q ss_pred HHHHHHHHHHhhhcc
Q 027214 202 LIGIMVGLILNLLLS 216 (226)
Q Consensus 202 lla~~lG~~l~~~~~ 216 (226)
++.-+|||++++++.
T Consensus 46 ~imG~IGfiIkli~i 60 (74)
T 1rh5_B 46 SLLGIIGYIIHVPAT 60 (74)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333467888887753
No 72
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=52.55 E-value=21 Score=26.52 Aligned_cols=31 Identities=16% Similarity=0.222 Sum_probs=24.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027214 151 DANSALQRLKDERDAAVRQTQLLQQDLDMLK 181 (226)
Q Consensus 151 e~~~~i~~L~eE~~~~~~en~~L~~el~~lr 181 (226)
+....+.+..++...++++++.|+.|+.++|
T Consensus 86 ~l~~~~~~e~~~~~~L~~~i~~Le~el~~~R 116 (117)
T 3kin_B 86 EWKKKYEKEKEKNKALKSVIQHLEVELNRWR 116 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3445566777788888889999999988877
No 73
>2xzz_A Protein-glutamine gamma-glutamyltransferase K; 2.30A {Homo sapiens}
Probab=52.27 E-value=60 Score=23.31 Aligned_cols=53 Identities=11% Similarity=0.170 Sum_probs=38.5
Q ss_pred CceeEeEEEEEcCCC---CeEEEEEEeCCCCcEEEeCCeeeeCCCCeEEEEEEeccc
Q 027214 24 EKQGFCDLKVINNTE---HHVAFKVKTTSPKKYFVRPNTGVVQPWDSCIIRVTLQAQ 77 (226)
Q Consensus 24 ~~~~~~~l~L~N~s~---~~vaFKVKTT~p~~Y~VrP~~G~I~P~~s~~I~V~l~~~ 77 (226)
++...+.++++|+-+ ....|-|--..-.+=... ..|-|.||+++.+.+.+.|.
T Consensus 19 ~~~l~v~vsf~NPL~~~L~~c~~~vEG~GL~~~~~~-~~~~v~pg~~~~~~~~~~P~ 74 (102)
T 2xzz_A 19 GQECEVQIVFKNPLPVTLTNVVFRLEGSGLQRPKIL-NVGDIGGNETVTLRQSFVPV 74 (102)
T ss_dssp SSCEEEEEEEECCSSSCBCSEEEEEEETTTEEEEEE-EECCBCTTCEEEEEEEECCC
T ss_pred CCeEEEEEEEECCCCCcccCEEEEEECCCCCcceEE-EcCcCCCCCEEEEEEEEecC
Confidence 567899999999865 566787765443222111 24779999999999999885
No 74
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=52.10 E-value=24 Score=26.47 Aligned_cols=29 Identities=17% Similarity=0.273 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027214 156 LQRLKDERDAAVRQTQLLQQDLDMLKRRG 184 (226)
Q Consensus 156 i~~L~eE~~~~~~en~~L~~el~~lr~~~ 184 (226)
+++|++|+..+.++.+....|+++||+..
T Consensus 73 vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~ 101 (121)
T 3mq7_A 73 VEELEGEITTLNHKLQDASAEVERLRREN 101 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 56666666666666666666777777654
No 75
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=51.90 E-value=65 Score=23.32 Aligned_cols=22 Identities=14% Similarity=0.389 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhc
Q 027214 194 LMFAAFVGLIGIMVGLILNLLL 215 (226)
Q Consensus 194 ~~~v~lv~lla~~lG~~l~~~~ 215 (226)
+..++++++++++++.++++.+
T Consensus 87 ~i~l~~~~i~~~i~~~~~~~~~ 108 (109)
T 3hd7_B 87 IMIIICCVILGIIIASTIGGIF 108 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHTTC-
T ss_pred eehHHHHHHHHHHHHHHhcccc
Confidence 3334445555666666666543
No 76
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=51.05 E-value=32 Score=24.16 Aligned_cols=27 Identities=26% Similarity=0.362 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027214 155 ALQRLKDERDAAVRQTQLLQQDLDMLK 181 (226)
Q Consensus 155 ~i~~L~eE~~~~~~en~~L~~el~~lr 181 (226)
....+.++++.+.++|+.|++++..|+
T Consensus 60 ~~~~l~~~~~~L~~~n~~L~~rl~~L~ 86 (88)
T 1nkp_A 60 EEQKLISEEDLLRKRREQLKHKLEQLG 86 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344555555666666666666655543
No 77
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=48.79 E-value=44 Score=20.45 Aligned_cols=34 Identities=15% Similarity=0.215 Sum_probs=26.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027214 151 DANSALQRLKDERDAAVRQTQLLQQDLDMLKRRG 184 (226)
Q Consensus 151 e~~~~i~~L~eE~~~~~~en~~L~~el~~lr~~~ 184 (226)
+.-.-|.+...|+.+..+++..||..+..|...+
T Consensus 6 ~l~qkI~kVdrEI~Kte~kI~~lqkKlkeLee~a 39 (42)
T 2l5g_B 6 ELIQNMDRVDREITMVEQQISKLKKKQQQLEEEA 39 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4455678899999999999999998887776543
No 78
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=48.78 E-value=37 Score=23.76 Aligned_cols=20 Identities=15% Similarity=0.275 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 027214 163 RDAAVRQTQLLQQDLDMLKR 182 (226)
Q Consensus 163 ~~~~~~en~~L~~el~~lr~ 182 (226)
+..+.++|++|++|...++.
T Consensus 50 ~~~L~~en~qLk~E~~~wq~ 69 (81)
T 2jee_A 50 REELERENNHLKEQQNGWQE 69 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 33356666677776655443
No 79
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=47.83 E-value=23 Score=22.65 Aligned_cols=27 Identities=22% Similarity=0.353 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027214 152 ANSALQRLKDERDAAVRQTQLLQQDLD 178 (226)
Q Consensus 152 ~~~~i~~L~eE~~~~~~en~~L~~el~ 178 (226)
.......|+.+...+.++++.|+.++.
T Consensus 24 Lk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 24 LRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 355667888888888888888887654
No 80
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=47.73 E-value=20 Score=24.58 Aligned_cols=23 Identities=9% Similarity=0.195 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 027214 153 NSALQRLKDERDAAVRQTQLLQQ 175 (226)
Q Consensus 153 ~~~i~~L~eE~~~~~~en~~L~~ 175 (226)
...|..|+++...+.++++.|++
T Consensus 56 i~YI~~L~~~~~~L~~e~~~L~~ 78 (80)
T 1hlo_A 56 TEYIQYMRRKNHTHQQDIDDLKR 78 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455555555555555554444
No 81
>3vta_A Cucumisin; subtilisin-like fold, serine protease, hydrolase; HET: DFP NAG FUC BMA MAN; 2.75A {Cucumis melo}
Probab=47.60 E-value=77 Score=29.80 Aligned_cols=51 Identities=12% Similarity=0.195 Sum_probs=39.7
Q ss_pred eeEeEEEEEcCCCCeEEEEEEeCCCC--cEEEeCCeeee-CCCCeEEEEEEecc
Q 027214 26 QGFCDLKVINNTEHHVAFKVKTTSPK--KYFVRPNTGVV-QPWDSCIIRVTLQA 76 (226)
Q Consensus 26 ~~~~~l~L~N~s~~~vaFKVKTT~p~--~Y~VrP~~G~I-~P~~s~~I~V~l~~ 76 (226)
..+-.-+++|.....-.|+++.+.|. .-.|.|..=.+ ..|++..+.|++..
T Consensus 538 ~~t~~rtvtnvg~~~~ty~~~v~~p~gv~v~V~P~~l~f~~~~~~~~~~vt~~~ 591 (621)
T 3vta_A 538 NQYFNRTLTSVAPQASTYRAMISAPQGLTISVNPNVLSFNGLGDRKSFTLTVRG 591 (621)
T ss_dssp EEEEEEEEEECSSSCEEEEEEEECCSSEEEEEESSEEEECSTTCEEEEEEEEEE
T ss_pred EEEEEEEEEccCCCCeEEEEEEECCCCcEEEEecCEEEEcCCCcEEEEEEEEEe
Confidence 34456689999999999999999987 45677888766 46888888888764
No 82
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=46.89 E-value=17 Score=30.90 Aligned_cols=27 Identities=22% Similarity=0.311 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027214 157 QRLKDERDAAVRQTQLLQQDLDMLKRR 183 (226)
Q Consensus 157 ~~L~eE~~~~~~en~~L~~el~~lr~~ 183 (226)
.+|.+++..+++|+.+|++|++.|++.
T Consensus 71 e~L~~~Lk~ar~El~~LkeElerL~sP 97 (251)
T 3m9b_A 71 SKLMETLKEARQQLLALREEVDRLGQP 97 (251)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 457888888889999999998888753
No 83
>3mp7_B Preprotein translocase subunit SECE; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus}
Probab=46.06 E-value=18 Score=23.99 Aligned_cols=33 Identities=3% Similarity=0.135 Sum_probs=16.3
Q ss_pred hccccCCCCchHH--HHHHHHHHHHHHHHHHhhhc
Q 027214 183 RGQRKGVRGFSLM--FAAFVGLIGIMVGLILNLLL 215 (226)
Q Consensus 183 ~~~~~~~~g~s~~--~v~lv~lla~~lG~~l~~~~ 215 (226)
+..++...-|... .+.+-.++--+|||++++++
T Consensus 21 ~~~KPd~~Ef~~iak~~~iG~~i~G~iGf~Ikli~ 55 (61)
T 3mp7_B 21 VTKKPNWATYKRAAKITGLGIILIGLIGMLIRIVG 55 (61)
T ss_dssp HSCCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334333445532 23333333445788888775
No 84
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=46.02 E-value=74 Score=22.29 Aligned_cols=17 Identities=12% Similarity=0.110 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 027214 165 AAVRQTQLLQQDLDMLK 181 (226)
Q Consensus 165 ~~~~en~~L~~el~~lr 181 (226)
.+.+..+.|+++-...+
T Consensus 37 ~L~~kt~~L~~~s~~F~ 53 (91)
T 3hd7_A 37 ELDDRADALQAGASQFE 53 (91)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444444433333
No 85
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=45.71 E-value=21 Score=24.53 Aligned_cols=24 Identities=33% Similarity=0.368 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 027214 160 KDERDAAVRQTQLLQQDLDMLKRR 183 (226)
Q Consensus 160 ~eE~~~~~~en~~L~~el~~lr~~ 183 (226)
.+=+..+.++++.|++|.+.|++.
T Consensus 46 i~YI~~L~~~~~~l~~e~~~L~~~ 69 (83)
T 1nkp_B 46 TEYIQYMRRKNHTHQQDIDDLKRQ 69 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444455555555555555443
No 86
>2huh_A Putative DNA mismatch repair protein; structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.54A {Bacteroides thetaiotaomicron} SCOP: b.7.5.1
Probab=45.46 E-value=41 Score=26.18 Aligned_cols=66 Identities=11% Similarity=0.167 Sum_probs=50.5
Q ss_pred EeEEEEEcCCCCeEEEEEEeCCCCcEEEeCCeeeeCCCCeEEEEEEeccccCCCCCCCCCCeEEEEEEecCCC
Q 027214 28 FCDLKVINNTEHHVAFKVKTTSPKKYFVRPNTGVVQPWDSCIIRVTLQAQRESPPDMQCKDKFLLQSTIVPSN 100 (226)
Q Consensus 28 ~~~l~L~N~s~~~vaFKVKTT~p~~Y~VrP~~G~I~P~~s~~I~V~l~~~~~~p~~~~~~dKFlVqs~~~~~~ 100 (226)
.-..-|.|.|+..+.|-.-+...+.+..| ..|.|+|+.+.-|.=.-.. +...--++.||.+.-..+
T Consensus 29 ~fe~YlVNdSNy~l~f~y~~~~~~~w~l~-~~G~iePntk~~ieef~~~------eln~~~~~~vQ~layK~~ 94 (147)
T 2huh_A 29 PFEAYLVNDSNYYLYYTYLSAEGKAWNNR-SHGLVEPNTKLLLEEFTKD------VLNEMERVAVQLIAFKDG 94 (147)
T ss_dssp CEEEEEEECSSSEEEEEEEEEETTEEEEE-EEEEECTTEEEEEEEECGG------GGGGCSSEEEEEEEECSS
T ss_pred ceEEEEEeCCCcEEEEEEEEeeCCeEEEE-EeeEECCCcEEEEEeeChh------HhcCCceEEEEEEEEcCC
Confidence 44778999999999999988888888877 7899999999887544222 112246689998887663
No 87
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=45.45 E-value=25 Score=24.27 Aligned_cols=29 Identities=17% Similarity=0.166 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027214 155 ALQRLKDERDAAVRQTQLLQQDLDMLKRR 183 (226)
Q Consensus 155 ~i~~L~eE~~~~~~en~~L~~el~~lr~~ 183 (226)
.+.+..+=+..+.+++.+|++|.+.|++.
T Consensus 41 iL~kA~~yI~~L~~~~~~l~~e~~~L~~e 69 (80)
T 1nlw_A 41 LLTKAKLHIKKLEDSDRKAVHQIDQLQRE 69 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555666666677777776666654
No 88
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=45.26 E-value=31 Score=23.87 Aligned_cols=28 Identities=14% Similarity=0.139 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027214 157 QRLKDERDAAVRQTQLLQQDLDMLKRRG 184 (226)
Q Consensus 157 ~~L~eE~~~~~~en~~L~~el~~lr~~~ 184 (226)
..+..+...|.+||..|+.++..|++..
T Consensus 39 ~e~~~r~~~L~~eN~~L~~~v~~L~~E~ 66 (78)
T 1gu4_A 39 LETQHKVLELTAENERLQKKVEQLSREL 66 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666677788999999999999888764
No 89
>3jt0_A Lamin-B1; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, HR5546A, LMNB1_human; 2.39A {Homo sapiens}
Probab=45.17 E-value=31 Score=26.64 Aligned_cols=42 Identities=12% Similarity=0.127 Sum_probs=28.6
Q ss_pred eEEEEEcCCCCeEE---EEEEeCCCC---cEEEeCCeeeeCCCCeEEEE
Q 027214 29 CDLKVINNTEHHVA---FKVKTTSPK---KYFVRPNTGVVQPWDSCIIR 71 (226)
Q Consensus 29 ~~l~L~N~s~~~va---FKVKTT~p~---~Y~VrP~~G~I~P~~s~~I~ 71 (226)
..++|.|.+++.+. |+++=...+ .|. -|..=+|+||++++|-
T Consensus 38 kfV~L~N~s~~~~~LgGW~L~r~v~g~~~~y~-FP~~~~L~pg~~VtVw 85 (144)
T 3jt0_A 38 KFIRLKNTSEQDQPMGGWEMIRKIGDTSVSYK-YTSRYVLKAGQTVTIW 85 (144)
T ss_dssp SEEEEEECSSSCEECTTCEEEEEETTEEEEEE-CCTTCEECTTCEEEEE
T ss_pred CEEEEEECCCCceecCCcEEEEEeCCCceEEE-cCCCcEECCCCEEEEE
Confidence 48899999887774 566544333 343 4555589999997764
No 90
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=44.80 E-value=29 Score=23.78 Aligned_cols=25 Identities=32% Similarity=0.387 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 027214 157 QRLKDERDAAVRQTQLLQQDLDMLK 181 (226)
Q Consensus 157 ~~L~eE~~~~~~en~~L~~el~~lr 181 (226)
..|..+++....+++.|+.+++.+|
T Consensus 43 ~eLEk~L~ekd~eI~~LqseLDKfr 67 (72)
T 3nmd_A 43 DELELELDQKDELIQMLQNELDKYR 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444444444455555555555544
No 91
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=44.50 E-value=32 Score=24.34 Aligned_cols=28 Identities=14% Similarity=0.139 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027214 157 QRLKDERDAAVRQTQLLQQDLDMLKRRG 184 (226)
Q Consensus 157 ~~L~eE~~~~~~en~~L~~el~~lr~~~ 184 (226)
..+..+...|.+||..|+.+++.|++..
T Consensus 39 ~e~~~r~~~Le~EN~~Lr~~v~~L~~E~ 66 (87)
T 1hjb_A 39 LETQHKVLELTAENERLQKKVEQLSREL 66 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677788999999999999988764
No 92
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=43.24 E-value=49 Score=23.24 Aligned_cols=26 Identities=15% Similarity=0.234 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027214 157 QRLKDERDAAVRQTQLLQQDLDMLKR 182 (226)
Q Consensus 157 ~~L~eE~~~~~~en~~L~~el~~lr~ 182 (226)
.+|.+++..+..++..|+++...||.
T Consensus 49 ~~Lh~~ie~l~eEi~~lk~en~eL~e 74 (83)
T 1uii_A 49 EKLHKEIEQKDNEIARLKKENKELAE 74 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555555555543
No 93
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=41.15 E-value=17 Score=26.52 Aligned_cols=30 Identities=17% Similarity=0.314 Sum_probs=25.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027214 150 PDANSALQRLKDERDAAVRQTQLLQQDLDM 179 (226)
Q Consensus 150 ~e~~~~i~~L~eE~~~~~~en~~L~~el~~ 179 (226)
......|..|..|+++++++++.|+-++..
T Consensus 15 ~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~ 44 (100)
T 1go4_E 15 DTLRLKVEELEGERSRLEEEKRMLEAQLER 44 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667899999999999999999988755
No 94
>3e38_A Two-domain protein containing predicted PHP-like dependent phosphoesterase; structural genomics; 2.20A {Bacteroides vulgatus atcc 8482}
Probab=40.69 E-value=58 Score=28.52 Aligned_cols=65 Identities=18% Similarity=0.253 Sum_probs=50.0
Q ss_pred eEEEEEcCCCCeEEEEEEeCCCCcEEEeCCeeeeCCCCeEEEEEEeccccCCCCCCCCCCeEEEEEEecCCC
Q 027214 29 CDLKVINNTEHHVAFKVKTTSPKKYFVRPNTGVVQPWDSCIIRVTLQAQRESPPDMQCKDKFLLQSTIVPSN 100 (226)
Q Consensus 29 ~~l~L~N~s~~~vaFKVKTT~p~~Y~VrP~~G~I~P~~s~~I~V~l~~~~~~p~~~~~~dKFlVqs~~~~~~ 100 (226)
-++.|+|.++- -|.++-+.+..|.+.++.--|+|+++..+.|.+.-.. ....=+|-|.-+.+.++
T Consensus 270 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ 334 (343)
T 3e38_A 270 VTLSITNVTDL--VLKLKKTAHDTLLVYFRDMTLKPHTRYTVRIGFKQGI-----KGGDVNFEVTNFIVAPD 334 (343)
T ss_dssp EEEEEEECSSS--CEEEEECSCCTTEECCSEEEECTTEEEEEEEEECTTC-----CCCEEEEEEEEEEEETT
T ss_pred eEEEeecCCCc--ceeeeccccccccccCceEEecCCCeEEEEEeccccc-----cceEEEEEeeeeeecCC
Confidence 58899998876 5677789999999999999999999999999876421 12345677766665443
No 95
>1a93_A Coiled coil, LZ, MYC proto-oncogene protein; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Homo sapiens} SCOP: h.1.3.1 PDB: 2a93_A
Probab=40.51 E-value=52 Score=19.22 Aligned_cols=26 Identities=27% Similarity=0.390 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027214 155 ALQRLKDERDAAVRQTQLLQQDLDML 180 (226)
Q Consensus 155 ~i~~L~eE~~~~~~en~~L~~el~~l 180 (226)
...+|-.|...++..+++|.+.++.+
T Consensus 8 dE~kLl~ekE~l~~r~eqL~~kLe~L 33 (34)
T 1a93_A 8 EEQKLISEEDLLRKRREQLKHKLEQL 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34566677777777777777766654
No 96
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=39.69 E-value=34 Score=18.53 Aligned_cols=22 Identities=32% Similarity=0.344 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 027214 160 KDERDAAVRQTQLLQQDLDMLK 181 (226)
Q Consensus 160 ~eE~~~~~~en~~L~~el~~lr 181 (226)
.=|.+.+.+.+..|+|.+..|+
T Consensus 6 efendaleqkiaalkqkiaslk 27 (28)
T 3ra3_A 6 EFENDALEQKIAALKQKIASLK 27 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHHHHhc
Confidence 3344445555555555554443
No 97
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=39.14 E-value=62 Score=22.94 Aligned_cols=27 Identities=15% Similarity=0.323 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027214 156 LQRLKDERDAAVRQTQLLQQDLDMLKR 182 (226)
Q Consensus 156 i~~L~eE~~~~~~en~~L~~el~~lr~ 182 (226)
|..+..|+.++.-|...|+.++..+|.
T Consensus 65 i~~~~~ek~~l~~e~dnl~~~~~~~k~ 91 (93)
T 3s4r_A 65 VDQLTNDKARVEVERDNLAEDIMRLRE 91 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444444444445555555543
No 98
>1yyc_A LEA protein, putative late embryogenesis abundant protein; structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana}
Probab=39.03 E-value=1e+02 Score=24.40 Aligned_cols=51 Identities=12% Similarity=0.209 Sum_probs=39.9
Q ss_pred eeEeEEEEEcCCC-----CeEEEEEEeCCCC-cEEEeCCeeeeCCCCeEEEEEEecc
Q 027214 26 QGFCDLKVINNTE-----HHVAFKVKTTSPK-KYFVRPNTGVVQPWDSCIIRVTLQA 76 (226)
Q Consensus 26 ~~~~~l~L~N~s~-----~~vaFKVKTT~p~-~Y~VrP~~G~I~P~~s~~I~V~l~~ 76 (226)
.....|+++|+.+ .-++|.++...-. ---+-|..|.|.++++..|.|-..-
T Consensus 63 ~~~l~LrV~NPN~~pLpi~gi~Y~L~vnG~~lasG~s~~~~tIpa~g~~~v~Vpv~v 119 (174)
T 1yyc_A 63 DYHAKVSVKNPYSQSIPICQISYILKSATRTIASGTIPDPGSLVGSGTTVLDVPVKV 119 (174)
T ss_dssp EEEEEEEEEECSSSCCBCCSEEEEEEESSSCEEEEEESCCCBCCSSEEEEEEEEEEE
T ss_pred EEEEEEEEECCCCCCccccceEEEEEECCEEEEEEecCCCceECCCCcEEEEEEEEE
Confidence 3567999999976 5689999987654 3356799999999999877777554
No 99
>3zy7_A AP-1 complex subunit gamma-1; endocytosis, protein design, computational design; 1.09A {Mus musculus} PDB: 2a7b_A 1gyv_A 1gyw_A
Probab=38.92 E-value=61 Score=23.95 Aligned_cols=68 Identities=16% Similarity=0.219 Sum_probs=42.7
Q ss_pred eEeEEEEEcCCCCeE-EEEEEeCCCCcEEEe--CCee-eeCC--CCeEEEEEEeccccCCCCCCCCCCeEEEEEEecC
Q 027214 27 GFCDLKVINNTEHHV-AFKVKTTSPKKYFVR--PNTG-VVQP--WDSCIIRVTLQAQRESPPDMQCKDKFLLQSTIVP 98 (226)
Q Consensus 27 ~~~~l~L~N~s~~~v-aFKVKTT~p~~Y~Vr--P~~G-~I~P--~~s~~I~V~l~~~~~~p~~~~~~dKFlVqs~~~~ 98 (226)
..-.++.+|.+..+| -|.+..-.|+-|.++ |.+| .|.| +..++=.+.+.. +.....+=|+.|.+..-.
T Consensus 31 ~~i~~~~~N~s~~~it~f~fqaAVPKs~kL~L~p~Sg~~l~p~~~~~itQ~l~i~n----~~~~~lklR~klsY~~~g 104 (122)
T 3zy7_A 31 TVITIQASNSTELDMTDFVFQAAVPKTFQLQLLSPSSSVVPAFNTGTITQVIKVLN----PQKQQLRMRIKLTFNWNG 104 (122)
T ss_dssp EEEEEEEEECSSSCBEEEEEEEECCTTSEEEECCCSCSCBCGGGSCCEEEEEEEEC----TTCCCCCEEEEEEEEETT
T ss_pred EEEEEEEEECCCCccccEEEEEEcCcccEEEecCCCCCccCCCCCCCEEEEEEEEC----CCCCCEEEEEEEEEEECC
Confidence 566778889886544 588888889977665 7777 6888 554432333222 112245667777776543
No 100
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=38.88 E-value=38 Score=22.84 Aligned_cols=30 Identities=13% Similarity=0.130 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027214 155 ALQRLKDERDAAVRQTQLLQQDLDMLKRRG 184 (226)
Q Consensus 155 ~i~~L~eE~~~~~~en~~L~~el~~lr~~~ 184 (226)
.|..|+.+++....++++|+.+++.++...
T Consensus 26 ~I~eLE~~L~~kd~eI~eLr~~LdK~qsVl 55 (67)
T 1zxa_A 26 RIKELEKRLSEKEEEIQELKRKLHKCQSVL 55 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456777777778888899999888877553
No 101
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=37.87 E-value=46 Score=22.50 Aligned_cols=26 Identities=15% Similarity=0.065 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027214 155 ALQRLKDERDAAVRQTQLLQQDLDML 180 (226)
Q Consensus 155 ~i~~L~eE~~~~~~en~~L~~el~~l 180 (226)
.|..|..++..+...+..|..|...|
T Consensus 30 ~i~~LE~~v~~le~~~~~l~~en~~L 55 (70)
T 1gd2_E 30 HLKALETQVVTLKELHSSTTLENDQL 55 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555544444444443333333
No 102
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=37.40 E-value=48 Score=18.36 Aligned_cols=23 Identities=13% Similarity=0.183 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 027214 158 RLKDERDAAVRQTQLLQQDLDML 180 (226)
Q Consensus 158 ~L~eE~~~~~~en~~L~~el~~l 180 (226)
.|.+-+..+..||.+|+...+.|
T Consensus 3 qlnallasleaenkqlkakveel 25 (31)
T 1p9i_A 3 QLNALLASLEAENKQLKAKVEEL 25 (31)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566667777888887766544
No 103
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=37.02 E-value=66 Score=20.80 Aligned_cols=25 Identities=20% Similarity=0.363 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 027214 154 SALQRLKDERDAAVRQTQLLQQDLD 178 (226)
Q Consensus 154 ~~i~~L~eE~~~~~~en~~L~~el~ 178 (226)
+.+=.|.+|.+.+++++.+|++-++
T Consensus 10 DtVYaLkDqV~eL~qe~k~m~k~lE 34 (56)
T 2w6b_A 10 DTVYALKDEVQELRQDNKKMKKSLE 34 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455788888888888888887664
No 104
>3q4f_C DNA repair protein XRCC4; DSB repair, nuclear, recombination-recombination complex, DN protein-protein binding complex; HET: DNA; 5.50A {Homo sapiens}
Probab=37.00 E-value=33 Score=27.65 Aligned_cols=20 Identities=10% Similarity=0.204 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 027214 157 QRLKDERDAAVRQTQLLQQD 176 (226)
Q Consensus 157 ~~L~eE~~~~~~en~~L~~e 176 (226)
.+|+++..++++||++|++|
T Consensus 164 ~~L~a~N~hLqkENeRL~~e 183 (186)
T 3q4f_C 164 AENQAKNEHLQKENERLLRD 183 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 45555555555555555544
No 105
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=36.50 E-value=39 Score=25.82 Aligned_cols=15 Identities=7% Similarity=0.359 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHH
Q 027214 167 VRQTQLLQQDLDMLK 181 (226)
Q Consensus 167 ~~en~~L~~el~~lr 181 (226)
.+++..|+++...|+
T Consensus 109 ~~e~~~l~~~~~~l~ 123 (138)
T 3hnw_A 109 AKEIKELKSEINKYQ 123 (138)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444444444333
No 106
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=36.47 E-value=77 Score=20.85 Aligned_cols=21 Identities=14% Similarity=0.246 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 027214 161 DERDAAVRQTQLLQQDLDMLK 181 (226)
Q Consensus 161 eE~~~~~~en~~L~~el~~lr 181 (226)
+.+.++.+=|..|.+|+-.|.
T Consensus 27 AkiQQLmkVN~~ls~Elr~mQ 47 (63)
T 2w6a_A 27 AKVQQLMKVNSSLSDELRKLQ 47 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHhhhHHHHHHH
Confidence 344444444444444444433
No 107
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=36.39 E-value=31 Score=23.38 Aligned_cols=30 Identities=17% Similarity=0.294 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027214 153 NSALQRLKDERDAAVRQTQLLQQDLDMLKR 182 (226)
Q Consensus 153 ~~~i~~L~eE~~~~~~en~~L~~el~~lr~ 182 (226)
...+..|..+...+..+|..|++++..|+.
T Consensus 35 E~~v~~le~~~~~l~~en~~Lr~~i~~L~~ 64 (70)
T 1gd2_E 35 ETQVVTLKELHSSTTLENDQLRQKVRQLEE 64 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555655555666666666666655543
No 108
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=36.05 E-value=50 Score=23.00 Aligned_cols=18 Identities=11% Similarity=0.102 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 027214 158 RLKDERDAAVRQTQLLQQ 175 (226)
Q Consensus 158 ~L~eE~~~~~~en~~L~~ 175 (226)
.+++|++.++++|..|+.
T Consensus 45 ~~~eEi~~LkeEN~~L~e 62 (79)
T 2zxx_A 45 QKDSEIARLRKENKDLAE 62 (79)
T ss_dssp HHHHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444433
No 109
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=35.81 E-value=68 Score=22.02 Aligned_cols=31 Identities=16% Similarity=-0.021 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 027214 155 ALQRLKDERDAAVRQTQLLQQDLDMLKRRGQ 185 (226)
Q Consensus 155 ~i~~L~eE~~~~~~en~~L~~el~~lr~~~~ 185 (226)
.|..|.+.+.+..+++.+|+.++..|+.+..
T Consensus 29 tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~ 59 (78)
T 3efg_A 29 ALTELSEALADARLTGARNAELIRHLLEDLG 59 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777777888888888888877654
No 110
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=35.62 E-value=67 Score=22.09 Aligned_cols=31 Identities=19% Similarity=0.307 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 027214 155 ALQRLKDERDAAVRQTQLLQQDLDMLKRRGQ 185 (226)
Q Consensus 155 ~i~~L~eE~~~~~~en~~L~~el~~lr~~~~ 185 (226)
++.-|++.+..+.+.|.+|+.|=..||....
T Consensus 16 EVevLKe~I~EL~e~~~qLE~EN~~Lk~~as 46 (78)
T 1dip_A 16 EVEILKEQIRELVEKNSQLERENTLLKTLAS 46 (78)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 4457777777888888888888777776554
No 111
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=35.54 E-value=30 Score=21.45 Aligned_cols=16 Identities=19% Similarity=0.665 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHh
Q 027214 197 AAFVGLIGIMVGLILN 212 (226)
Q Consensus 197 v~lv~lla~~lG~~l~ 212 (226)
++++.++++.++.|++
T Consensus 21 vll~vi~~l~~~~~~R 36 (44)
T 2jwa_A 21 ILLVVVLGVVFGILIK 36 (44)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhee
Confidence 3455555555555554
No 112
>2ls4_A High affinity copper uptake protein 1; HCTR1 TMDS, oligomerization, metal transport; NMR {Homo sapiens}
Probab=41.52 E-value=8 Score=21.37 Aligned_cols=16 Identities=19% Similarity=0.125 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHh
Q 027214 197 AAFVGLIGIMVGLILN 212 (226)
Q Consensus 197 v~lv~lla~~lG~~l~ 212 (226)
+++.+++|..+||++-
T Consensus 5 l~iavvlGa~~Gyf~F 20 (26)
T 2ls4_A 5 LCIAVAAGAGTGYFLF 20 (26)
Confidence 4556667777777763
No 113
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=34.09 E-value=74 Score=21.25 Aligned_cols=25 Identities=36% Similarity=0.425 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 027214 157 QRLKDERDAAVRQTQLLQQDLDMLK 181 (226)
Q Consensus 157 ~~L~eE~~~~~~en~~L~~el~~lr 181 (226)
...++|+..++..++.|+-|++.+|
T Consensus 52 ~~~k~Ei~elrr~iq~L~~el~slk 76 (77)
T 3trt_A 52 RQAKQESTEYRRQVQSLTMEVDALK 76 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3344555555555555665555544
No 114
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=33.32 E-value=59 Score=17.45 Aligned_cols=18 Identities=22% Similarity=0.390 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 027214 166 AVRQTQLLQQDLDMLKRR 183 (226)
Q Consensus 166 ~~~en~~L~~el~~lr~~ 183 (226)
+.+|.+.||+.+-.||++
T Consensus 6 lykeledlqerlrklrkk 23 (27)
T 3twe_A 6 LYKELEDLQERLRKLRKK 23 (27)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444555555555555543
No 115
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=33.29 E-value=75 Score=22.59 Aligned_cols=28 Identities=25% Similarity=0.472 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027214 156 LQRLKDERDAAVRQTQLLQQDLDMLKRR 183 (226)
Q Consensus 156 i~~L~eE~~~~~~en~~L~~el~~lr~~ 183 (226)
+..|..+...+..|.++|++|...+.+.
T Consensus 50 ~~~LE~e~~~L~~e~~~L~~e~~~~~~e 77 (90)
T 2wt7_B 50 KHHLENEKTQLIQQVEQLKQEVSRLARE 77 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666777777777777777666543
No 116
>3bo0_B Preprotein translocase SECE subunit; ribosome-SECY complex, protein translocation; 9.60A {Escherichia coli} PDB: 3bo1_B 3kcr_B
Probab=33.10 E-value=99 Score=19.97 Aligned_cols=21 Identities=14% Similarity=0.100 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhc
Q 027214 195 MFAAFVGLIGIMVGLILNLLL 215 (226)
Q Consensus 195 ~~v~lv~lla~~lG~~l~~~~ 215 (226)
...+++.++..++||++.++.
T Consensus 37 ~~t~vv~~~v~~i~~~i~lid 57 (65)
T 3bo0_B 37 KVTALGISLLGIIGYIIHVPA 57 (65)
T ss_dssp HHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHhhhhHHHHHHHHHHHHH
Confidence 455666667777777777654
No 117
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=33.04 E-value=72 Score=20.67 Aligned_cols=27 Identities=11% Similarity=0.054 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027214 158 RLKDERDAAVRQTQLLQQDLDMLKRRG 184 (226)
Q Consensus 158 ~L~eE~~~~~~en~~L~~el~~lr~~~ 184 (226)
.|-++++.+..++.+-+||..+|++..
T Consensus 22 ~L~~kv~~Le~~c~e~eQEieRL~~LL 48 (58)
T 3a2a_A 22 QLAAKIQHLEFSCSEKEQEIERLNKLL 48 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566677778888888888888887654
No 118
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=33.03 E-value=58 Score=20.73 Aligned_cols=16 Identities=25% Similarity=0.304 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 027214 162 ERDAAVRQTQLLQQDL 177 (226)
Q Consensus 162 E~~~~~~en~~L~~el 177 (226)
+...++.||.+|++|+
T Consensus 11 QVe~Lk~ENshLrrEL 26 (54)
T 1deb_A 11 QVEALKMENSNLRQEL 26 (54)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHH
Confidence 3344445555555554
No 119
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=32.97 E-value=34 Score=21.09 Aligned_cols=16 Identities=13% Similarity=0.407 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHh
Q 027214 197 AAFVGLIGIMVGLILN 212 (226)
Q Consensus 197 v~lv~lla~~lG~~l~ 212 (226)
++++++++++++||++
T Consensus 21 v~~~~ii~~~~~~~~R 36 (44)
T 2ks1_B 21 LLLLLVVALGIGLFMR 36 (44)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhh
Confidence 4455566666666664
No 120
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=32.39 E-value=48 Score=21.82 Aligned_cols=22 Identities=9% Similarity=0.052 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 027214 155 ALQRLKDERDAAVRQTQLLQQD 176 (226)
Q Consensus 155 ~i~~L~eE~~~~~~en~~L~~e 176 (226)
.+..|..+...|..++..|+++
T Consensus 38 ~v~~L~~eN~~L~~ev~~Lr~~ 59 (63)
T 2dgc_A 38 KVEELLSKNYHLENEVARLKKL 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555444
No 121
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=31.84 E-value=67 Score=19.93 Aligned_cols=22 Identities=27% Similarity=0.516 Sum_probs=12.5
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHH
Q 027214 156 LQRLKDER-DAAVRQTQLLQQDL 177 (226)
Q Consensus 156 i~~L~eE~-~~~~~en~~L~~el 177 (226)
+.++++|+ ...++|.+++++|+
T Consensus 9 le~~KqEIL~E~RkElqK~K~EI 31 (45)
T 1use_A 9 LQRVKQELLEEVKKELQKVKEEI 31 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444443 45666677777764
No 122
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=31.16 E-value=91 Score=23.75 Aligned_cols=31 Identities=13% Similarity=0.161 Sum_probs=24.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027214 151 DANSALQRLKDERDAAVRQTQLLQQDLDMLK 181 (226)
Q Consensus 151 e~~~~i~~L~eE~~~~~~en~~L~~el~~lr 181 (226)
+....+.+|.+|+..+.+++++|++++...+
T Consensus 29 ~l~~~v~~l~~e~k~l~ke~~~l~~~~a~~~ 59 (171)
T 2zvf_A 29 KLPKTVERFFEEWKDQRKEIERLKSVIADLW 59 (171)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566778899999999999999998876543
No 123
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=30.80 E-value=38 Score=22.33 Aligned_cols=21 Identities=38% Similarity=0.610 Sum_probs=16.9
Q ss_pred EEEEEcCCCCeEEEEEEeCCC
Q 027214 30 DLKVINNTEHHVAFKVKTTSP 50 (226)
Q Consensus 30 ~l~L~N~s~~~vaFKVKTT~p 50 (226)
.|++...+.+.+.|||+.|.+
T Consensus 3 ~lkV~~~~g~~v~~~v~~~t~ 23 (72)
T 1wm3_A 3 NLKVAGQDGSVVQFKIKRHTP 23 (72)
T ss_dssp EEEEECTTSCEEEEEECTTSC
T ss_pred EEEEECCCCCEEEEEECCCCh
Confidence 577777777888999988876
No 124
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=30.59 E-value=93 Score=22.97 Aligned_cols=27 Identities=11% Similarity=0.165 Sum_probs=17.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027214 151 DANSALQRLKDERDAAVRQTQLLQQDL 177 (226)
Q Consensus 151 e~~~~i~~L~eE~~~~~~en~~L~~el 177 (226)
++.+.+..|+.|+..++..+..|+..+
T Consensus 32 e~~~~~~~Lq~El~~lr~~~~~l~~~i 58 (111)
T 2v66_B 32 QSYKQVSVLEDDLSQTRAIKEQLHKYV 58 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566777777777776666555443
No 125
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=30.48 E-value=73 Score=21.89 Aligned_cols=27 Identities=15% Similarity=0.201 Sum_probs=23.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027214 150 PDANSALQRLKDERDAAVRQTQLLQQD 176 (226)
Q Consensus 150 ~e~~~~i~~L~eE~~~~~~en~~L~~e 176 (226)
...+..|.+|.+..+++..||.-|++-
T Consensus 18 evLKe~I~EL~e~~~qLE~EN~~Lk~~ 44 (78)
T 1dip_A 18 EILKEQIRELVEKNSQLERENTLLKTL 44 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345778999999999999999999974
No 126
>4hci_A Cupredoxin 1; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.63A {Bacillus anthracis} PDB: 4hcg_A 4hcf_A
Probab=30.22 E-value=1.1e+02 Score=20.89 Aligned_cols=49 Identities=18% Similarity=0.176 Sum_probs=29.2
Q ss_pred ecCeeEEeeecCceeEeEEEEEcCCCCeEEEEEEeCCCCcEEEeCCeeeeCCCCeEEEEEE
Q 027214 13 HPEELKFIFELEKQGFCDLKVINNTEHHVAFKVKTTSPKKYFVRPNTGVVQPWDSCIIRVT 73 (226)
Q Consensus 13 ~P~eL~F~~~~~~~~~~~l~L~N~s~~~vaFKVKTT~p~~Y~VrP~~G~I~P~~s~~I~V~ 73 (226)
+|.+|..+. ..+-.+.++|.....-.|-+.... ..+.+.||++..+.++
T Consensus 26 ~P~~i~v~~----G~tV~~~~~n~d~~~H~~~~~~~~--------~~~~~~pg~~~~~~~t 74 (100)
T 4hci_A 26 NPNVITIPI----NESTTLLLKNKGKSEHTFTIKKLG--------IDVVVESGKEKNITVK 74 (100)
T ss_dssp ESSEEEECT----TSCEEEEEEECSSSCEEEEEGGGT--------EEEEECTTCEEEEEEC
T ss_pred eCCEEEECC----CCEEEEEEEcCCCceEEEEEecCC--------cceeecCCcceeEEEe
Confidence 455554432 224456778877666666553221 2356889998888776
No 127
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=30.22 E-value=1.1e+02 Score=19.53 Aligned_cols=23 Identities=9% Similarity=0.133 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 027214 158 RLKDERDAAVRQTQLLQQDLDML 180 (226)
Q Consensus 158 ~L~eE~~~~~~en~~L~~el~~l 180 (226)
.|..+.+.|..+..+|+.+...+
T Consensus 8 ~Lss~V~~L~~kVdqLssdV~al 30 (52)
T 1jcd_A 8 QASSDAQTANAKADQASNDANAA 30 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444333
No 128
>1ifr_A Lamin A/C; immunoglobulin, immune system; 1.40A {Homo sapiens} SCOP: b.1.16.1 PDB: 1ivt_A 3gef_A
Probab=29.73 E-value=1.1e+02 Score=22.68 Aligned_cols=42 Identities=12% Similarity=0.135 Sum_probs=28.7
Q ss_pred eEEEEEcCCCCeEE---EEEEeCCC----CcEEEeCCeeeeCCCCeEEEE
Q 027214 29 CDLKVINNTEHHVA---FKVKTTSP----KKYFVRPNTGVVQPWDSCIIR 71 (226)
Q Consensus 29 ~~l~L~N~s~~~va---FKVKTT~p----~~Y~VrP~~G~I~P~~s~~I~ 71 (226)
..++|.|.+++.+. |+++-... -.|. -|..=+|.||++++|-
T Consensus 19 ~fV~l~N~s~~~~~L~gW~l~r~v~~~~~~~y~-Fp~~~~L~pg~~vtIw 67 (121)
T 1ifr_A 19 KFVRLRNKSNEDQSMGNWQIKRQNGDDPLLTYR-FPPKFTLKAGQVVTIW 67 (121)
T ss_dssp SEEEEEECSSSCEECTTCEEEEEETTSCCEEEE-CCSSCEECTTCEEEEE
T ss_pred CEEEEEeCCCCccccCCCEEEEEcCCCccEEEE-eCCCcEECCCCEEEEE
Confidence 47899998887664 67766522 2444 5666789999987644
No 129
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=29.27 E-value=86 Score=25.23 Aligned_cols=31 Identities=16% Similarity=0.072 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027214 154 SALQRLKDERDAAVRQTQLLQQDLDMLKRRG 184 (226)
Q Consensus 154 ~~i~~L~eE~~~~~~en~~L~~el~~lr~~~ 184 (226)
..+.-+.+....|+.+|.+|++|-++|++..
T Consensus 145 elid~~ld~~~~L~~~n~~LqkeNeRL~~E~ 175 (184)
T 3w03_C 145 ELICYCLDTIAENQAKNEHLQKENERLLRDW 175 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678888999999999999999999998764
No 130
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=28.77 E-value=45 Score=20.60 Aligned_cols=15 Identities=7% Similarity=0.350 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHh
Q 027214 198 AFVGLIGIMVGLILN 212 (226)
Q Consensus 198 ~lv~lla~~lG~~l~ 212 (226)
+++++++++++||++
T Consensus 21 ~~v~ii~~~~~~~~R 35 (44)
T 2l2t_A 21 FILVIVGLTFAVYVR 35 (44)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhh
Confidence 444455555556554
No 131
>1rtm_1 Mannose-binding protein-A; lectin; 1.80A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1 PDB: 1kwu_A* 1kwv_A* 1kwt_A* 1kwx_A* 1kwy_A* 1kx1_A* 1kww_A 1kwz_A* 1kx0_A* 3kmb_1* 1kmb_1* 2kmb_1* 4kmb_1* 1afb_1* 1afa_1* 1afd_1 1bch_1* 1bcj_1* 1fif_A 1fih_A*
Probab=28.64 E-value=61 Score=23.85 Aligned_cols=25 Identities=8% Similarity=0.169 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 027214 159 LKDERDAAVRQTQLLQQDLDMLKRR 183 (226)
Q Consensus 159 L~eE~~~~~~en~~L~~el~~lr~~ 183 (226)
|.++++.+..+.++|++++..++..
T Consensus 2 ~~~~l~~l~~~~~~l~~~l~~l~~~ 26 (149)
T 1rtm_1 2 IEVKLANMEAEINTLKSKLELTNKL 26 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4566777777777888877777654
No 132
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=28.49 E-value=34 Score=25.32 Aligned_cols=22 Identities=14% Similarity=0.232 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 027214 156 LQRLKDERDAAVRQTQLLQQDL 177 (226)
Q Consensus 156 i~~L~eE~~~~~~en~~L~~el 177 (226)
+.+|.+|+.+|+-||..|++.+
T Consensus 10 ~EeLaaeL~kLqmENK~LKkkl 31 (110)
T 2oa5_A 10 YEEMVKEVERLKLENKTLKQKV 31 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4588899999999999998875
No 133
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=28.43 E-value=1.2e+02 Score=21.02 Aligned_cols=26 Identities=23% Similarity=0.143 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027214 156 LQRLKDERDAAVRQTQLLQQDLDMLK 181 (226)
Q Consensus 156 i~~L~eE~~~~~~en~~L~~el~~lr 181 (226)
|..|+.|++.++-+++.+.-++..+.
T Consensus 29 l~~Lq~Ev~~LRGqiE~~~~~l~ql~ 54 (83)
T 2xdj_A 29 LSDNQSDIDSLRGQIQENQYQLNQVV 54 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 34555566666555555555555444
No 134
>3i6s_A Subtilisin-like protease; PA-domain, FN3-domain, hydrolase; HET: NAG FUC; 2.50A {Solanum lycopersicum} PDB: 3i74_A*
Probab=28.19 E-value=2.7e+02 Score=26.35 Aligned_cols=51 Identities=20% Similarity=0.164 Sum_probs=39.9
Q ss_pred eEeEEEEEcCCCCeEEEEEEeCCCCcEE--EeCCeeeeC-CCCeEEEEEEeccc
Q 027214 27 GFCDLKVINNTEHHVAFKVKTTSPKKYF--VRPNTGVVQ-PWDSCIIRVTLQAQ 77 (226)
Q Consensus 27 ~~~~l~L~N~s~~~vaFKVKTT~p~~Y~--VrP~~G~I~-P~~s~~I~V~l~~~ 77 (226)
.+-.-+++|.++..-.|+++.++|.-.. |.|..=... .+++....|++.+.
T Consensus 560 ~~~~Rtvtnvg~~~~~y~~~v~~p~g~~v~v~P~~l~f~~~~~~~~f~v~~~~~ 613 (649)
T 3i6s_A 560 QKFKRTVTNVGKGAATYKAKLKAPKNSTISVSPQILVFKNKNEKQSYTLTIRYI 613 (649)
T ss_dssp EEEEEEEEECC--CEEEEEEEECCTTEEEEEESSEEEECC-CCEEEEEEEEEEC
T ss_pred EEEEEEEEEeCCCCcEEEEEEecCCCCEEEEECCEEEEecCCCEEEEEEEEEec
Confidence 5678899999988889999999998655 569998774 89999999998763
No 135
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=27.54 E-value=53 Score=22.97 Aligned_cols=22 Identities=36% Similarity=0.566 Sum_probs=18.4
Q ss_pred eEEEEEcCCCCeEEEEEEeCCC
Q 027214 29 CDLKVINNTEHHVAFKVKTTSP 50 (226)
Q Consensus 29 ~~l~L~N~s~~~vaFKVKTT~p 50 (226)
-.|++...+.+.|.||||.|.+
T Consensus 6 i~ikVk~~~g~~v~~~vk~~t~ 27 (91)
T 2io0_B 6 INLKVAGQDGSVVQFKIKRHTP 27 (91)
T ss_dssp EEEEEECTTSCEEEEEEETTSC
T ss_pred EEEEEECCCCCEEEEEECCCCh
Confidence 4688888888899999998887
No 136
>4gio_A Putative lipoprotein; unknown function; 1.90A {Campylobacter jejuni subsp}
Probab=27.49 E-value=1.4e+02 Score=21.65 Aligned_cols=50 Identities=12% Similarity=0.083 Sum_probs=36.3
Q ss_pred CceeEeEEEEEcCCCCeEEEEEEeCCCCcEEEeCC------eeeeCCCCeEEEEEE
Q 027214 24 EKQGFCDLKVINNTEHHVAFKVKTTSPKKYFVRPN------TGVVQPWDSCIIRVT 73 (226)
Q Consensus 24 ~~~~~~~l~L~N~s~~~vaFKVKTT~p~~Y~VrP~------~G~I~P~~s~~I~V~ 73 (226)
++.....++++|.++..+.||+.==..+-+-|.+. .=.|.+++++.|.-.
T Consensus 35 nG~l~v~v~~~s~~~~~l~Yrf~WyD~~G~~v~~~~~~~W~~~~l~g~~~~~i~~v 90 (107)
T 4gio_A 35 NGYLEFEVILRSTFAKDVIYKVDWLDKDGFVLRDVLNEDYQALRIPAGQEVILRKL 90 (107)
T ss_dssp TSCEEEEEEECCSSCEEEEEEEEEECTTSCBCCSSCCCCCEEEEECTTCCEEEEEE
T ss_pred CCEEEEEEEecCCCceEEEEEEEEECCCCCCcCCCCCCCCEEEEEcCCCeEEEEEE
Confidence 45667889999999999999998777777777653 234666666655433
No 137
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=27.42 E-value=81 Score=20.74 Aligned_cols=24 Identities=29% Similarity=0.271 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 027214 158 RLKDERDAAVRQTQLLQQDLDMLK 181 (226)
Q Consensus 158 ~L~eE~~~~~~en~~L~~el~~lr 181 (226)
.|.+|+..++.+.++|+.|-..||
T Consensus 38 ~ls~Elr~mQ~~lq~LQsen~~Lr 61 (63)
T 2w6a_A 38 SLSDELRKLQREIHKLQAENLQLR 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHhhhhhhc
Confidence 444455555555555555544444
No 138
>1c7s_A Beta-N-acetylhexosaminidase; glycosyl hydrolase, chitinolysis, A/B(TIM)-barrel, site directed mutagenesis; HET: CBS; 1.80A {Serratia marcescens} SCOP: b.1.18.2 b.2.2.3 c.1.8.6 d.92.2.1 PDB: 1c7t_A* 1qba_A 1qbb_A*
Probab=27.33 E-value=99 Score=30.67 Aligned_cols=32 Identities=19% Similarity=0.256 Sum_probs=26.1
Q ss_pred EEEEeCCCCcEEEeCCeee--eCCCCeEEEEEEe
Q 027214 43 FKVKTTSPKKYFVRPNTGV--VQPWDSCIIRVTL 74 (226)
Q Consensus 43 FKVKTT~p~~Y~VrP~~G~--I~P~~s~~I~V~l 74 (226)
|||..-+-+.|.+.|.-++ |.||+++.|.++.
T Consensus 76 ~~i~~~~gd~~~l~P~~~f~~~~~g~~~~~~~~~ 109 (858)
T 1c7s_A 76 FKIAHLTGDLYKLEPTAKFSGFPAGKAVEIPVVA 109 (858)
T ss_dssp EEEEECSTTEEEEEECTTCCCBCTTEEEEEEEEE
T ss_pred eeEEEEeCeEEEEecCCCCCccCCCCEEEEEEEe
Confidence 5665556677888899887 9999999999974
No 139
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=27.32 E-value=93 Score=21.91 Aligned_cols=26 Identities=15% Similarity=0.171 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027214 158 RLKDERDAAVRQTQLLQQDLDMLKRR 183 (226)
Q Consensus 158 ~L~eE~~~~~~en~~L~~el~~lr~~ 183 (226)
+|+.++..+.++..+|++++..++..
T Consensus 5 ~L~~~i~~L~~q~~~L~~ei~~~~a~ 30 (85)
T 3viq_B 5 QLESRVHLLEQQKEQLESSLQDALAK 30 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666666666666666665543
No 140
>3ndz_E Endoglucanase D; cellotriose, xylanase, carbohydrate binding D glucanase, hydrolase; HET: CT3; 2.08A {Clostridium cellulovorans} PDB: 3ndy_E*
Probab=27.16 E-value=1.4e+02 Score=21.43 Aligned_cols=52 Identities=12% Similarity=0.146 Sum_probs=33.9
Q ss_pred CceeEeEEEEEcCCCCeEE-EEEEe-----------------CCCCcEEEeCC--eeeeCC-CCeEEEEEEec
Q 027214 24 EKQGFCDLKVINNTEHHVA-FKVKT-----------------TSPKKYFVRPN--TGVVQP-WDSCIIRVTLQ 75 (226)
Q Consensus 24 ~~~~~~~l~L~N~s~~~va-FKVKT-----------------T~p~~Y~VrP~--~G~I~P-~~s~~I~V~l~ 75 (226)
...-...++|+|.++.+|. ++|.= .+-..|.|+|. -|-|.| |+++.+-+.-.
T Consensus 14 ~~Gf~~~vtVtN~g~~~i~gWtv~~~~p~g~~it~~Wna~~s~sG~~vt~~n~~wN~~la~~G~s~~fGf~g~ 86 (107)
T 3ndz_E 14 GSGASVNVTIKNNGTTPINGWTLKWTMPINQTITNMWSASFVASGTTLSVTNAGYNGTIAANGGTQSFGFNIN 86 (107)
T ss_dssp SSEEEEEEEEEECSSSCEESCEEEEECCTTEEEEEEESEEEEEETTEEEEEECSTTCEECTTTEEEEEEEEEE
T ss_pred CCCEEEEEEEEeCCCCcccCcEEEEEcCCCCEEecccceEEEecCCEEEEEECCcccccCCCCccEEEEEEEe
Confidence 3455678889988765543 33222 23467899864 489999 99877666543
No 141
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=26.76 E-value=97 Score=21.77 Aligned_cols=24 Identities=17% Similarity=0.338 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 027214 160 KDERDAAVRQTQLLQQDLDMLKRR 183 (226)
Q Consensus 160 ~eE~~~~~~en~~L~~el~~lr~~ 183 (226)
.+|+..-.+++..|++++++.+++
T Consensus 50 ~~el~~h~~ei~~le~~i~rhk~~ 73 (84)
T 1gmj_A 50 ENEISHHAKEIERLQKEIERHKQS 73 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666677777777777766554
No 142
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=26.13 E-value=1.1e+02 Score=20.71 Aligned_cols=29 Identities=31% Similarity=0.369 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027214 155 ALQRLKDERDAAVRQTQLLQQDLDMLKRR 183 (226)
Q Consensus 155 ~i~~L~eE~~~~~~en~~L~~el~~lr~~ 183 (226)
.+....+=+..|.++++.|+++...|++.
T Consensus 51 iL~~Ai~YI~~L~~~~~~L~~e~~~L~~~ 79 (80)
T 1hlo_A 51 ILDKATEYIQYMRRKNHTHQQDIDDLKRQ 79 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44566666778889999999999988875
No 143
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=25.94 E-value=1.4e+02 Score=20.12 Aligned_cols=31 Identities=16% Similarity=0.152 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027214 153 NSALQRLKDERDAAVRQTQLLQQDLDMLKRR 183 (226)
Q Consensus 153 ~~~i~~L~eE~~~~~~en~~L~~el~~lr~~ 183 (226)
+..+..|++.+-++.+-|.+|+++...+++.
T Consensus 23 nvlvgslR~KLiKYtelnKKLe~~~~~~q~s 53 (74)
T 2q6q_A 23 KKIAETLRSKLEKYVDITKKLEDQNLNLQIK 53 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 4456777888888888899999988776654
No 144
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=25.83 E-value=1.2e+02 Score=24.61 Aligned_cols=27 Identities=22% Similarity=0.346 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027214 157 QRLKDERDAAVRQTQLLQQDLDMLKRR 183 (226)
Q Consensus 157 ~~L~eE~~~~~~en~~L~~el~~lr~~ 183 (226)
..|.+++....+|+..|+++++.+|..
T Consensus 30 ~~L~~ql~~k~~ei~~L~~ql~sl~~~ 56 (190)
T 4emc_A 30 FVLSEKLDTKATEIKQLQKQIDSLNAQ 56 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344444444445555566665555543
No 145
>1xo8_A AT1G01470; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, unknown function; NMR {Arabidopsis thaliana} SCOP: b.1.25.1
Probab=25.18 E-value=1.3e+02 Score=22.88 Aligned_cols=50 Identities=12% Similarity=0.193 Sum_probs=38.9
Q ss_pred eeEeEEEEEcCCC-----CeEEEEEEeCCCCcE-EEeCCeeeeCCCCeEEEEEEec
Q 027214 26 QGFCDLKVINNTE-----HHVAFKVKTTSPKKY-FVRPNTGVVQPWDSCIIRVTLQ 75 (226)
Q Consensus 26 ~~~~~l~L~N~s~-----~~vaFKVKTT~p~~Y-~VrP~~G~I~P~~s~~I~V~l~ 75 (226)
.....++++|+.+ .-++|.++...-..- -+-|..|.|.++++..+.|-..
T Consensus 40 ~~~~~l~V~NPN~~~lpi~gi~y~l~vng~~lasG~~~~~~~ipa~g~~~v~vpv~ 95 (151)
T 1xo8_A 40 EYLAKVSVTNPYSHSIPICEISFTFHSAGREIGKGKIPDPGSLKAKDMTALDIPVV 95 (151)
T ss_dssp CEEEEEEEECSSSSCCCCEEEEEEEESSSSCEEEEEEEECCCCSSSSEEEEEECCC
T ss_pred EEEEEEEEECCCCCCcccccEEEEEEECCEEEEEEecCCCcEECCCCcEEEEEEEE
Confidence 3467999999976 567999987765533 5668889999999988877654
No 146
>3mtu_E Head morphogenesis protein, tropomyosin alpha-1 C; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Bacillus phage PHI29}
Probab=24.94 E-value=1.1e+02 Score=21.07 Aligned_cols=26 Identities=23% Similarity=0.241 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027214 154 SALQRLKDERDAAVRQTQLLQQDLDM 179 (226)
Q Consensus 154 ~~i~~L~eE~~~~~~en~~L~~el~~ 179 (226)
+.|..|.+++...+.++..++++++.
T Consensus 44 KTIDDLEDkL~~eKEK~k~i~eeLDq 69 (77)
T 3mtu_E 44 SEYNDLEEKVAHAKEENLNMHQMLDQ 69 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 45666777776666777777776653
No 147
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=24.72 E-value=1.2e+02 Score=18.06 Aligned_cols=21 Identities=19% Similarity=0.183 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 027214 156 LQRLKDERDAAVRQTQLLQQD 176 (226)
Q Consensus 156 i~~L~eE~~~~~~en~~L~~e 176 (226)
+.+.++++..+..+.+.|++|
T Consensus 10 LeEtkeQi~~l~~kl~~LkeE 30 (38)
T 2l5g_A 10 LEETKEQILKLEEKLLALQEE 30 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444
No 148
>3viq_A SWI5-dependent recombination DNA repair protein 1; recombination activator; 2.20A {Schizosaccharomyces pombe}
Probab=24.33 E-value=98 Score=23.12 Aligned_cols=26 Identities=19% Similarity=0.162 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027214 158 RLKDERDAAVRQTQLLQQDLDMLKRR 183 (226)
Q Consensus 158 ~L~eE~~~~~~en~~L~~el~~lr~~ 183 (226)
.|..++..|..+++.|+++++.+++.
T Consensus 4 ~L~~~~~~L~~~i~~l~~~L~~lkqa 29 (122)
T 3viq_A 4 QLLSRRLKLEKEVRNLQEQLITAETA 29 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666677777777777777777654
No 149
>3q48_A Chaperone CUPB2; IG fold, periplasmic chaperone; 2.50A {Pseudomonas aeruginosa}
Probab=24.27 E-value=83 Score=26.36 Aligned_cols=43 Identities=23% Similarity=0.219 Sum_probs=28.3
Q ss_pred EeEEEEEcCCCCeEEEE-EEeCC-CCcEEEeCCeeeeCCCCeEEEEE
Q 027214 28 FCDLKVINNTEHHVAFK-VKTTS-PKKYFVRPNTGVVQPWDSCIIRV 72 (226)
Q Consensus 28 ~~~l~L~N~s~~~vaFK-VKTT~-p~~Y~VrP~~G~I~P~~s~~I~V 72 (226)
...|++.|+|..+|.|- ++... ...+.. ..|.|.|+++..+.+
T Consensus 172 ~~~L~v~Nptpyyvtl~~l~~~~~~~~~~~--~~~mV~P~s~~~~~l 216 (257)
T 3q48_A 172 KTVVQVNNPTPYYVSFASVELIVDGRVMSV--GKGMVAPFSTKEFDW 216 (257)
T ss_dssp --CEEEEECSSSCEEEEEEEEEETTEEEEE--EEEEECTTEEEEECC
T ss_pred CcEEEEECCCceEEEEEEEEEccCCeeccc--cceeEcCCceeEEec
Confidence 34699999999999884 33222 222322 358999999988754
No 150
>2iaa_C Azurin; quinoprotein, tryptophan tryptophylquinone, cupredoxin, electron transfer, oxidoreductase/electron transport comple; HET: TRQ; 1.95A {Alcaligenes faecalis} PDB: 2h47_C* 2h3x_C*
Probab=23.73 E-value=61 Score=24.15 Aligned_cols=62 Identities=10% Similarity=0.065 Sum_probs=35.8
Q ss_pred EEEecCeeEEeeecCceeEeEEEEEcCCCCe-----EEEEEEeCC-------------C-CcEE------EeCCeeeeCC
Q 027214 10 ISVHPEELKFIFELEKQGFCDLKVINNTEHH-----VAFKVKTTS-------------P-KKYF------VRPNTGVVQP 64 (226)
Q Consensus 10 L~i~P~eL~F~~~~~~~~~~~l~L~N~s~~~-----vaFKVKTT~-------------p-~~Y~------VrP~~G~I~P 64 (226)
+..+|.+|..+.+ ..+-.++++|...-+ --|-+-+.+ + ..|. +--..++|.|
T Consensus 12 m~F~p~~i~V~k~---G~~vtv~~~N~g~~p~~~m~Hn~vi~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~t~~l~p 88 (128)
T 2iaa_C 12 MQFNTKSIVVDKT---CKEFTINLKHTGKLPKAAMGHNVVVSKKSDESAVATDGMKAGLNNDYVKAGDERVIAHTSVIGG 88 (128)
T ss_dssp SCBSCSEEEECTT---CSEEEEEEEECSCSCHHHHCBCCEEEETTHHHHHHHHHHHHCGGGTTSCTTCTTEEEECCCBCT
T ss_pred ceEecCEEEEecC---CcEEEEEEEECCCCcccCCCceEEEccccchhhHHHhhhhccccccccccccchhhccceeeCC
Confidence 4556766666321 234579999987543 444444432 0 0111 1112467899
Q ss_pred CCeEEEEEEe
Q 027214 65 WDSCIIRVTL 74 (226)
Q Consensus 65 ~~s~~I~V~l 74 (226)
|++..|.++.
T Consensus 89 Ges~~vtf~~ 98 (128)
T 2iaa_C 89 GETDSVTFDV 98 (128)
T ss_dssp TCEEEEEEES
T ss_pred CCEEEEEEec
Confidence 9999999985
No 151
>1iby_A Nitrosocyanin; RED copper, cupredoxin, beta hairpin, metal binding protein; 1.65A {Nitrosomonas europaea} SCOP: b.6.1.4 PDB: 1ibz_A 1ic0_A
Probab=23.72 E-value=1.9e+02 Score=20.09 Aligned_cols=50 Identities=20% Similarity=0.207 Sum_probs=29.9
Q ss_pred ecCeeEEeeecCceeEeEEEEEcCCCCeEEEEEEeCCCCcEEEeCCeeeeCCCCeEEEEEEe
Q 027214 13 HPEELKFIFELEKQGFCDLKVINNTEHHVAFKVKTTSPKKYFVRPNTGVVQPWDSCIIRVTL 74 (226)
Q Consensus 13 ~P~eL~F~~~~~~~~~~~l~L~N~s~~~vaFKVKTT~p~~Y~VrP~~G~I~P~~s~~I~V~l 74 (226)
.|..|+.+. ..+-.+.++|.....-.|-+.... + ...+.||++..+.++.
T Consensus 36 ~p~~i~v~~----G~~V~~~~~n~d~~~H~~~i~~~~-----~---~~~i~pG~~~~~~f~~ 85 (112)
T 1iby_A 36 EPETLVVKK----GDAVKVVVENKSPISEGFSIDAFG-----V---QEVIKAGETKTISFTA 85 (112)
T ss_dssp ESCEEEEET----TCEEEEEEEECSSSCEEEEEGGGT-----E---EEEECTTCEEEEEEEC
T ss_pred cCCEEEEeC----CCEEEEEEEECCCCeEEEEEcCCC-----c---eeEeCCCCEEEEEEEC
Confidence 455554432 234567778887555555553221 1 4568999999888863
No 152
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=23.70 E-value=1.1e+02 Score=24.79 Aligned_cols=32 Identities=9% Similarity=0.100 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 027214 154 SALQRLKDERDAAVRQTQLLQQDLDMLKRRGQ 185 (226)
Q Consensus 154 ~~i~~L~eE~~~~~~en~~L~~el~~lr~~~~ 185 (226)
.+|++|+.|...+.+|++...+|+..|+++..
T Consensus 20 ~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~ 51 (190)
T 4emc_A 20 LLVANLVNENFVLSEKLDTKATEIKQLQKQID 51 (190)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36677777777777777777777777766543
No 153
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=23.38 E-value=1.4e+02 Score=18.77 Aligned_cols=25 Identities=24% Similarity=0.304 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 027214 155 ALQRLKDERDAAVRQTQLLQQDLDM 179 (226)
Q Consensus 155 ~i~~L~eE~~~~~~en~~L~~el~~ 179 (226)
.|.+|.+++...+.++..+.++++.
T Consensus 20 ~ID~LEdeL~~eKek~~~i~~eLD~ 44 (52)
T 2z5i_A 20 LVDDLEDELYAQKLKYKAISEELDH 44 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3444444444445555556666543
No 154
>1klf_A FIMC chaperone, chaperone protein FIMC; adhesin-chaperone complex, mannose-bound, chaperone/adhesin complex complex; HET: MAN; 2.79A {Escherichia coli} SCOP: b.1.11.1 b.7.2.1 PDB: 1kiu_A* 3rfz_C 1qun_A 1bf8_A 1ze3_C 3bwu_C 3jwn_C
Probab=23.25 E-value=1.3e+02 Score=24.15 Aligned_cols=39 Identities=15% Similarity=0.272 Sum_probs=28.4
Q ss_pred EEEEEcCCCCeEEEEEEeCCCCcEEEeCCeeeeCCCCeEEEEE
Q 027214 30 DLKVINNTEHHVAFKVKTTSPKKYFVRPNTGVVQPWDSCIIRV 72 (226)
Q Consensus 30 ~l~L~N~s~~~vaFKVKTT~p~~Y~VrP~~G~I~P~~s~~I~V 72 (226)
.|++.|+|..++.|-=-+-+.+.+ + .+.|.|+++..+.+
T Consensus 139 ~l~v~Nptpy~vtl~~l~~~g~~~---~-~~mv~P~s~~~~~l 177 (205)
T 1klf_A 139 SLTLINPTPYYLTVTELNAGTRVL---E-NALVPPMGESTVKL 177 (205)
T ss_dssp EEEEEECSSSCEEEEEEESSSSBC---C-CEEECTTEEEEEEC
T ss_pred EEEEECCCCCEEEEEEEEeCCccc---c-cceEcCCCcceeec
Confidence 699999999999986323333333 2 37999999988764
No 155
>2lll_A Lamin-B2; immunoglobulin-like fold, structural protein, NESG, northeas structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=23.03 E-value=1.3e+02 Score=22.87 Aligned_cols=42 Identities=10% Similarity=0.143 Sum_probs=29.6
Q ss_pred eEEEEEcCCCCeEE---EEEEeCCCC----cEEEeCCeeeeCCCCeEEEE
Q 027214 29 CDLKVINNTEHHVA---FKVKTTSPK----KYFVRPNTGVVQPWDSCIIR 71 (226)
Q Consensus 29 ~~l~L~N~s~~~va---FKVKTT~p~----~Y~VrP~~G~I~P~~s~~I~ 71 (226)
..|+|.|.+++.+. |+++=...+ .|. -|+.=+|.||++++|-
T Consensus 34 efV~L~N~s~~~~~L~GW~L~r~v~g~~~~~y~-Fp~~~~L~pg~~VtIw 82 (139)
T 2lll_A 34 KFVQLKNNSDKDQSLGNWRIKRQVLEGEEIAYK-FTPKYILRAGQMVTVW 82 (139)
T ss_dssp SEEEEEECSSSCEECSSCEEEEEETTSCEEEEE-CCTTCEECTTCEEEEE
T ss_pred CEEEEEECCCCccccCCCEEEEecCCCccEEEE-ECCCcEECCCCEEEEE
Confidence 48999999887764 677765432 344 4666788999987644
No 156
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=22.77 E-value=1.9e+02 Score=20.18 Aligned_cols=20 Identities=10% Similarity=0.273 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 027214 164 DAAVRQTQLLQQDLDMLKRR 183 (226)
Q Consensus 164 ~~~~~en~~L~~el~~lr~~ 183 (226)
..|.+++..|++|+..+++.
T Consensus 49 ~~Lh~~ie~l~eEi~~lk~e 68 (83)
T 1uii_A 49 EKLHKEIEQKDNEIARLKKE 68 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444443
No 157
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=22.71 E-value=1.3e+02 Score=24.61 Aligned_cols=33 Identities=15% Similarity=0.271 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 027214 153 NSALQRLKDERDAAVRQTQLLQQDLDMLKRRGQ 185 (226)
Q Consensus 153 ~~~i~~L~eE~~~~~~en~~L~~el~~lr~~~~ 185 (226)
...+..|++++..+..+..+++.|.+.+|++..
T Consensus 65 ~~~l~~l~~e~~el~d~~lR~~AEfeN~RkR~~ 97 (213)
T 4ani_A 65 KAQIAELEAKLSEMEHRYLRLYADFENFRRRTR 97 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667777777777777777777777777654
No 158
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=22.67 E-value=74 Score=22.27 Aligned_cols=23 Identities=35% Similarity=0.540 Sum_probs=17.7
Q ss_pred EeEEEEEcCCCCeEEEEEEeCCC
Q 027214 28 FCDLKVINNTEHHVAFKVKTTSP 50 (226)
Q Consensus 28 ~~~l~L~N~s~~~vaFKVKTT~p 50 (226)
.-.|++...+.+.|.|||+.+.+
T Consensus 7 ~i~ikVk~~~g~~i~~~v~~~t~ 29 (94)
T 2io1_B 7 HINLKVAGQDGSVVQFKIKRHTP 29 (94)
T ss_dssp EEEEEEECTTSCEEEEEEETTSC
T ss_pred eEEEEEECCCCCEEEEEECCCCH
Confidence 34677777777888888888876
No 159
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=22.27 E-value=1.5e+02 Score=18.54 Aligned_cols=27 Identities=11% Similarity=0.058 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027214 158 RLKDERDAAVRQTQLLQQDLDMLKRRG 184 (226)
Q Consensus 158 ~L~eE~~~~~~en~~L~~el~~lr~~~ 184 (226)
.|......+......+.||..+|++-.
T Consensus 15 ~L~~kv~~Le~~c~~~eQEieRL~~LL 41 (48)
T 3vmx_A 15 QLATKIQHLEFSCSEKEQEIERLNKLL 41 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHH
Confidence 444445555566667777877777643
No 160
>1qhq_A Protein (auracyanin); electron transfer, cupredoxin, blue copper protein, azurin-L thermophIle; 1.55A {Chloroflexus aurantiacus} SCOP: b.6.1.1 PDB: 1ov8_A
Probab=22.25 E-value=66 Score=23.65 Aligned_cols=18 Identities=11% Similarity=0.052 Sum_probs=14.7
Q ss_pred CCeeeeCCCCeEEEEEEe
Q 027214 57 PNTGVVQPWDSCIIRVTL 74 (226)
Q Consensus 57 P~~G~I~P~~s~~I~V~l 74 (226)
.....|.||++..+.+++
T Consensus 95 ~~t~~l~pG~~~~~~~~~ 112 (140)
T 1qhq_A 95 AWTAMLNAGESGSVTFRT 112 (140)
T ss_dssp EECCCBCTTEEEEEEEEC
T ss_pred ccceeeCCCceeEEEEEe
Confidence 345688999999999986
No 161
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=22.04 E-value=1.4e+02 Score=20.81 Aligned_cols=9 Identities=11% Similarity=0.158 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 027214 170 TQLLQQDLD 178 (226)
Q Consensus 170 n~~L~~el~ 178 (226)
+..|++|..
T Consensus 54 i~~Lk~en~ 62 (83)
T 1wlq_A 54 IARLRKENK 62 (83)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 162
>3o0l_A Uncharacterized protein; PFAM DUF1425 family member, structural genomics, joint cente structural genomics, JCSG, protein structure initiative; HET: MSE; 1.81A {Shewanella loihica}
Probab=21.80 E-value=1.8e+02 Score=21.09 Aligned_cols=50 Identities=6% Similarity=-0.080 Sum_probs=35.2
Q ss_pred cCceeEeEEEEEcCCCCe--EEEEEEeCCCCcEEEeCC-e----eeeCCCCeEEEEE
Q 027214 23 LEKQGFCDLKVINNTEHH--VAFKVKTTSPKKYFVRPN-T----GVVQPWDSCIIRV 72 (226)
Q Consensus 23 ~~~~~~~~l~L~N~s~~~--vaFKVKTT~p~~Y~VrP~-~----G~I~P~~s~~I~V 72 (226)
.++.......|+|.++.+ +.||+-==..+-+-|.|. . =.|.|++++.|.-
T Consensus 36 ~~g~l~~~~~l~N~~~~~~~l~Yrf~WyD~~Gl~v~~~~~~W~~l~l~~~~~~~l~~ 92 (112)
T 3o0l_A 36 EAGFLRARGTIISKSPKDQRLQYKFTWYDINGATVEDEGVSWKSLKLHGKQQMQVTA 92 (112)
T ss_dssp GGGCEEEEEEEEECSSSCEEEEEEEEEECTTSCBCCCTTCCCEEEEECTTCEEEEEE
T ss_pred cCCeEEEEEEEEeCCCCCEEEEEEEEEECCCCCCcCCCCCCcEEEEECCCCeEEEEE
Confidence 355678899999998766 888887777777777764 1 1366666655543
No 163
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=21.80 E-value=1.6e+02 Score=21.63 Aligned_cols=31 Identities=29% Similarity=0.356 Sum_probs=20.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027214 150 PDANSALQRLKDERDAAVRQTQLLQQDLDML 180 (226)
Q Consensus 150 ~e~~~~i~~L~eE~~~~~~en~~L~~el~~l 180 (226)
.+.+..|+.|+.|++.++.++..|+..+..+
T Consensus 39 ~elrr~iq~L~~el~~l~~~~~~LE~~l~e~ 69 (129)
T 3tnu_B 39 SEMNRMIQRLRAEIDNVKKQCANLQNAIADA 69 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3455667777777777777777666655443
No 164
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=21.38 E-value=1.5e+02 Score=21.39 Aligned_cols=28 Identities=21% Similarity=0.260 Sum_probs=15.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027214 151 DANSALQRLKDERDAAVRQTQLLQQDLD 178 (226)
Q Consensus 151 e~~~~i~~L~eE~~~~~~en~~L~~el~ 178 (226)
+|+.++..-..++..+...|.+|+.++.
T Consensus 66 EAN~MVa~ar~e~~~~e~kn~~L~~qL~ 93 (97)
T 2eqb_B 66 EANNMVADARKEKYAIEILNKRLTEQLR 93 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555555555556666666666653
No 165
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=21.38 E-value=82 Score=21.92 Aligned_cols=24 Identities=33% Similarity=0.519 Sum_probs=18.2
Q ss_pred eEeEEEEEcCCCCeEEEEEEeCCC
Q 027214 27 GFCDLKVINNTEHHVAFKVKTTSP 50 (226)
Q Consensus 27 ~~~~l~L~N~s~~~vaFKVKTT~p 50 (226)
..-.|++...+.+.+.|||+.|.+
T Consensus 16 ~~i~ikV~~~~g~~i~~~v~~~t~ 39 (93)
T 2d07_B 16 DHINLKVAGQDGSVVQFKIKRHTP 39 (93)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSC
T ss_pred CeEEEEEECCCCCEEEEEEccCCH
Confidence 345777777777788888888876
No 166
>4ay0_A Chaperone protein CAF1M; amino acid motifs, bacterial capsules, bacterial proteins, gene expression regulation, molecular chaperones, binding; 1.52A {Yersinia pestis} PDB: 1p5v_A 1p5u_A 1z9s_A 2os7_A 3dos_A 3dpb_A 3dsn_A 4b0m_M 4az8_A 4ayf_A
Probab=21.30 E-value=1.2e+02 Score=24.60 Aligned_cols=39 Identities=13% Similarity=0.079 Sum_probs=27.8
Q ss_pred EEEEEcCCCCeEEEEEEeCCCCcEEEeCCeeeeCCCCeEEEEE
Q 027214 30 DLKVINNTEHHVAFKVKTTSPKKYFVRPNTGVVQPWDSCIIRV 72 (226)
Q Consensus 30 ~l~L~N~s~~~vaFKVKTT~p~~Y~VrP~~G~I~P~~s~~I~V 72 (226)
.|+++|+|..+|.|-=-+-+.+ .+. .+.|.|+++..+.+
T Consensus 149 ~l~v~NptPyyvtl~~l~~~g~--~i~--~~mv~P~s~~~~~l 187 (218)
T 4ay0_A 149 KLIAENPSPFYMNIGELTFGGK--SIP--SHYIPPKSTWAFDL 187 (218)
T ss_dssp EEEEEECSSSCEEEEEEEETTE--ECC--CCEECTTEEEEEEC
T ss_pred EEEEECCCCCEEEEEEEEECCE--Ecc--CcEECCCCeeEEEC
Confidence 5999999999999852222222 342 48999999887764
No 167
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=21.28 E-value=1.5e+02 Score=24.18 Aligned_cols=24 Identities=17% Similarity=0.224 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 027214 158 RLKDERDAAVRQTQLLQQDLDMLK 181 (226)
Q Consensus 158 ~L~eE~~~~~~en~~L~~el~~lr 181 (226)
+|.+++..+..|+..|++|...||
T Consensus 119 ~Lh~~ie~l~eEi~~LkeEn~eLk 142 (209)
T 2wvr_A 119 KLHKEIEQKDNEIARLKKENKELA 142 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444
No 168
>2yf2_A C4B binding protein; immune system, complement system; 2.24A {Gallus gallus}
Probab=21.10 E-value=1.1e+02 Score=19.69 Aligned_cols=21 Identities=24% Similarity=0.221 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 027214 162 ERDAAVRQTQLLQQDLDMLKR 182 (226)
Q Consensus 162 E~~~~~~en~~L~~el~~lr~ 182 (226)
|+.++.-|+++|+.|+..|-+
T Consensus 35 Ei~KL~LEIQKL~~EL~glsk 55 (65)
T 2yf2_A 35 EIRKLFLEIQKLKVELQGLSK 55 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcchhH
Confidence 556677778888888766544
No 169
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=20.75 E-value=1.8e+02 Score=21.25 Aligned_cols=22 Identities=14% Similarity=0.212 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 027214 155 ALQRLKDERDAAVRQTQLLQQD 176 (226)
Q Consensus 155 ~i~~L~eE~~~~~~en~~L~~e 176 (226)
.+..|+++++.++...+.|++|
T Consensus 19 ei~~L~~ei~eLk~~ve~lEkE 40 (106)
T 4e61_A 19 TIGSLNEEIEQYKGTVSTLEIE 40 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444
No 170
>2wwb_B SEC61gamma, protein transport protein SEC61 subunit gamma; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris}
Probab=20.46 E-value=1e+02 Score=20.66 Aligned_cols=11 Identities=18% Similarity=0.606 Sum_probs=8.5
Q ss_pred HHHHHHhhhcc
Q 027214 206 MVGLILNLLLS 216 (226)
Q Consensus 206 ~lG~~l~~~~~ 216 (226)
+|||++++++.
T Consensus 49 ~IGf~IklI~i 59 (68)
T 2wwb_B 49 FIGFFVKLIHI 59 (68)
T ss_dssp HHHHHHHHHHG
T ss_pred HHHHHHHHHHH
Confidence 67899888763
No 171
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=20.25 E-value=85 Score=23.18 Aligned_cols=24 Identities=38% Similarity=0.573 Sum_probs=19.2
Q ss_pred eEeEEEEEcCCCCeEEEEEEeCCC
Q 027214 27 GFCDLKVINNTEHHVAFKVKTTSP 50 (226)
Q Consensus 27 ~~~~l~L~N~s~~~vaFKVKTT~p 50 (226)
..-.|++.......|.||||.+.|
T Consensus 39 ~~I~LKV~~qdg~ev~fkIk~tt~ 62 (115)
T 3kyd_D 39 EYIKLKVIGQDSSEIHFKVKMTTH 62 (115)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSC
T ss_pred CeEEEEEEcCCCCEEEEEEccCCh
Confidence 355788888778889999998887
Done!