BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027215
(226 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O22152|YAB1_ARATH Axial regulator YABBY 1 OS=Arabidopsis thaliana GN=YAB1 PE=1 SV=1
Length = 229
Score = 279 bits (713), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 152/227 (66%), Positives = 176/227 (77%), Gaps = 16/227 (7%)
Query: 7 AALSPDHLSSSEQLCYVHCTFCDTVLAVPYHFIFSVSVPCTSLFKTVTVRCGHCTNLLSV 66
A SPDH S S+ LCYV C FC T+LAV +VP TSLFKTVTVRCG CTNLLSV
Sbjct: 12 AVCSPDHFSPSDHLCYVQCNFCQTILAV--------NVPYTSLFKTVTVRCGCCTNLLSV 63
Query: 67 NMRGLLLPAANQLHLG---HPFFTPQNLLEEIRNVPANMLMINPPNPADQSVMPVRVVDH 123
NMR +LPA+NQL L H +F PQ++LEE+R+ P+NM M+ + +P + H
Sbjct: 64 NMRSYVLPASNQLQLQLGPHSYFNPQDILEELRDAPSNMNMMMMNQHPTMNDIPSFMDLH 123
Query: 124 Q--EIPKSPVVNRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFP 181
Q EIPK+P VNRPPEKRQRVPSAYNRFIK+EIQRIKAGNPDISHREAFSAAAKNWAHFP
Sbjct: 124 QQHEIPKAPPVNRPPEKRQRVPSAYNRFIKEEIQRIKAGNPDISHREAFSAAAKNWAHFP 183
Query: 182 HIHFGLMPSDQPVKKTSVRQQQEGEDAMI-KDGFFAP-AANVGVTPY 226
HIHFGL+P +QPVKKT++ QQEGED M+ K+GF+AP AANVGVTPY
Sbjct: 184 HIHFGLVPDNQPVKKTNM-PQQEGEDNMVMKEGFYAPAAANVGVTPY 229
>sp|Q9XFB1|YAB3_ARATH Axial regulator YABBY 3 OS=Arabidopsis thaliana GN=YAB3 PE=1 SV=1
Length = 240
Score = 250 bits (638), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 149/237 (62%), Positives = 171/237 (72%), Gaps = 31/237 (13%)
Query: 8 ALSPDHLSSSEQLCYVHCTFCDTVLAVPYHFIFSVSVPCTSLFKTVTVRCGHCTNLLSV- 66
A PDH SS++QLCYVHC+FCDTVLAV SVP +SLFKTVTVRCGHC+NLLSV
Sbjct: 13 AFPPDHFSSTDQLCYVHCSFCDTVLAV--------SVPPSSLFKTVTVRCGHCSNLLSVT 64
Query: 67 -NMRGLLLPAANQLHLGHPFFTPQ------NLLEEIR----NVPANMLM---INPPNPAD 112
+MR LLLP+ + L GH F P NLLEE+R N+ NM+M + +P +
Sbjct: 65 VSMRALLLPSVSNL--GHSFLPPPPPPPPPNLLEEMRSGGQNINMNMMMSHHASAHHPNE 122
Query: 113 QSVMPVR---VVDH-QEIPKSPVVNRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHRE 168
VM R VDH QE+P+ P NRPPEKRQRVPSAYNRFIK+EIQRIKAGNPDISHRE
Sbjct: 123 HLVMATRNGRSVDHLQEMPRPPPANRPPEKRQRVPSAYNRFIKEEIQRIKAGNPDISHRE 182
Query: 169 AFSAAAKNWAHFPHIHFGLMPSDQPVKKTSVRQQQEGEDAMI-KDGFFAPAANVGVT 224
AFSAAAKNWAHFPHIHFGLM P KK +VR QQEGED M+ ++GF+ AANVGV
Sbjct: 183 AFSAAAKNWAHFPHIHFGLMADHPPTKKANVR-QQEGEDGMMGREGFYGSAANVGVA 238
>sp|Q0JBF0|YAB5_ORYSJ Protein YABBY 5 OS=Oryza sativa subsp. japonica GN=YAB5 PE=2 SV=1
Length = 266
Score = 231 bits (588), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 139/275 (50%), Positives = 162/275 (58%), Gaps = 58/275 (21%)
Query: 1 MSSSTPAALSPDHLS-----------SSEQLCYVHCTFCDTVLAVPYHFIFSVSVPCTSL 49
M SS P S DHLS EQLCYVHC FCDT+LAV VPC+SL
Sbjct: 1 MMSSAPETFSLDHLSQHQQQQPPPLAEQEQLCYVHCNFCDTILAV--------GVPCSSL 52
Query: 50 FKTVTVRCGHCTNLLSVNMRGLLLPAA----NQLHLGHPFFTP---QNLLEEIRN--VPA 100
FKTVTVRCGHC NLLSVN+RGLLLPAA NQL G +P LL+E+ + PA
Sbjct: 53 FKTVTVRCGHCANLLSVNLRGLLLPAAASTANQLPFGQALLSPTSPHGLLDEVPSFQAPA 112
Query: 101 NMLMI------------------NPPNPADQSVMPVRVVDHQEIPK-SPVVNRPPEKRQR 141
+++ N P + S + PK +P NR EKRQR
Sbjct: 113 SLMTEQASPNVSSITSSNSSCANNAPATSMASAANKATQREPQQPKNAPSANRTSEKRQR 172
Query: 142 VPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGLMPSDQPVKKTSVRQ 201
VPSAYNRFIKDEIQRIKA NPDI+HREAFSAAAKNWAHFPHIHFGLMP DQ +KKT ++
Sbjct: 173 VPSAYNRFIKDEIQRIKASNPDITHREAFSAAAKNWAHFPHIHFGLMP-DQGLKKTGIQS 231
Query: 202 QQ-EGEDAMIKDGFF---------APAANVGVTPY 226
Q GE + KDG + A+++GVTP+
Sbjct: 232 QDGAGECMLFKDGLYAAAAAAAAATAASSMGVTPF 266
>sp|Q01JG2|YAB5_ORYSI Protein YABBY 5 OS=Oryza sativa subsp. indica GN=YAB5 PE=2 SV=2
Length = 266
Score = 231 bits (588), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 139/275 (50%), Positives = 162/275 (58%), Gaps = 58/275 (21%)
Query: 1 MSSSTPAALSPDHLS-----------SSEQLCYVHCTFCDTVLAVPYHFIFSVSVPCTSL 49
M SS P S DHLS EQLCYVHC FCDT+LAV VPC+SL
Sbjct: 1 MMSSAPETFSLDHLSQHQQQQPPPLAEQEQLCYVHCNFCDTILAV--------GVPCSSL 52
Query: 50 FKTVTVRCGHCTNLLSVNMRGLLLPAA----NQLHLGHPFFTP---QNLLEEIRN--VPA 100
FKTVTVRCGHC NLLSVN+RGLLLPAA NQL G +P LL+E+ + PA
Sbjct: 53 FKTVTVRCGHCANLLSVNLRGLLLPAAASTANQLPFGQALLSPTSPHGLLDEVPSFQAPA 112
Query: 101 NMLMI------------------NPPNPADQSVMPVRVVDHQEIPK-SPVVNRPPEKRQR 141
+++ N P + S + PK +P NR EKRQR
Sbjct: 113 SLMTEQASPNVSSITSSNSSCANNAPATSMASAANKATQREPQQPKNAPSANRTSEKRQR 172
Query: 142 VPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGLMPSDQPVKKTSVRQ 201
VPSAYNRFIKDEIQRIKA NPDI+HREAFSAAAKNWAHFPHIHFGLMP DQ +KKT ++
Sbjct: 173 VPSAYNRFIKDEIQRIKASNPDITHREAFSAAAKNWAHFPHIHFGLMP-DQGLKKTGIQS 231
Query: 202 QQ-EGEDAMIKDGFF---------APAANVGVTPY 226
Q GE + KDG + A+++GVTP+
Sbjct: 232 QDGAGECMLFKDGLYAAAAAAAAATAASSMGVTPF 266
>sp|Q6H668|YAB4_ORYSJ Protein YABBY 4 OS=Oryza sativa subsp. japonica GN=YAB4 PE=2 SV=1
Length = 256
Score = 218 bits (554), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 140/254 (55%), Positives = 163/254 (64%), Gaps = 50/254 (19%)
Query: 12 DHLSS---SEQLCYVHCTFCDTVLAVPYHFIFSVSVPCTSLFKTVTVRCGHCTNLLSVNM 68
DHL++ +EQLCYVHC CDT+LAV VPC+SLFKTVTVRCGHC NLLSVN+
Sbjct: 14 DHLAAPSPTEQLCYVHCNCCDTILAV--------GVPCSSLFKTVTVRCGHCANLLSVNL 65
Query: 69 RGLLLPAA-----NQLHLGHPFFTP---QNLLEEIRNVPANMLMINPPN----------- 109
RGLLLPA NQLH G +P LL+E+ ++LM +
Sbjct: 66 RGLLLPAPAPAPANQLHFGPSLLSPTSPHGLLDEVAFQTPSLLMEQAASASLSSITGRSS 125
Query: 110 -------PADQSVMPVRVVDHQ-EIPKSP--VVNRPPEKRQRVPSAYNRFIKDEIQRIKA 159
PA Q + P + V + E+PK+ NRPPEKRQRVPSAYNRFIKDEIQRIKA
Sbjct: 126 SSCASNAPAMQ-MPPAKPVQQEPELPKNAPASANRPPEKRQRVPSAYNRFIKDEIQRIKA 184
Query: 160 GNPDISHREAFSAAAKNWAHFPHIHFGLMPSDQPVKKTSVRQQQEGEDAMIKDGFF---- 215
GNPDISHREAFSAAAKNWAHFPHIHFGLMP DQ KKT + Q ED ++KD +
Sbjct: 185 GNPDISHREAFSAAAKNWAHFPHIHFGLMP-DQGFKKT-FKPQDGSEDILLKDSLYAAAA 242
Query: 216 ---APAANVGVTPY 226
A AAN+GVTP+
Sbjct: 243 AAAAAAANMGVTPF 256
>sp|A2X7Q3|YAB4_ORYSI Protein YABBY 4 OS=Oryza sativa subsp. indica GN=YAB4 PE=2 SV=1
Length = 256
Score = 218 bits (554), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 140/254 (55%), Positives = 163/254 (64%), Gaps = 50/254 (19%)
Query: 12 DHLSS---SEQLCYVHCTFCDTVLAVPYHFIFSVSVPCTSLFKTVTVRCGHCTNLLSVNM 68
DHL++ +EQLCYVHC CDT+LAV VPC+SLFKTVTVRCGHC NLLSVN+
Sbjct: 14 DHLAAPSPTEQLCYVHCNCCDTILAV--------GVPCSSLFKTVTVRCGHCANLLSVNL 65
Query: 69 RGLLLPAA-----NQLHLGHPFFTP---QNLLEEIRNVPANMLMINPPN----------- 109
RGLLLPA NQLH G +P LL+E+ ++LM +
Sbjct: 66 RGLLLPAPAPAPANQLHFGPSLLSPTSPHGLLDEVAFQTPSLLMEQAASASLSSITGRSS 125
Query: 110 -------PADQSVMPVRVVDHQ-EIPKSP--VVNRPPEKRQRVPSAYNRFIKDEIQRIKA 159
PA Q + P + V + E+PK+ NRPPEKRQRVPSAYNRFIKDEIQRIKA
Sbjct: 126 SSCASNAPAMQ-MPPAKPVQQEPELPKNAPASANRPPEKRQRVPSAYNRFIKDEIQRIKA 184
Query: 160 GNPDISHREAFSAAAKNWAHFPHIHFGLMPSDQPVKKTSVRQQQEGEDAMIKDGFF---- 215
GNPDISHREAFSAAAKNWAHFPHIHFGLMP DQ KKT + Q ED ++KD +
Sbjct: 185 GNPDISHREAFSAAAKNWAHFPHIHFGLMP-DQGFKKT-FKPQDGSEDILLKDSLYAAAA 242
Query: 216 ---APAANVGVTPY 226
A AAN+GVTP+
Sbjct: 243 AAAAAAANMGVTPF 256
>sp|Q8GW46|YAB5_ARATH Axial regulator YABBY 5 OS=Arabidopsis thaliana GN=YAB5 PE=2 SV=1
Length = 164
Score = 176 bits (446), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 96/177 (54%), Positives = 114/177 (64%), Gaps = 25/177 (14%)
Query: 12 DHLSSSEQLCYVHCTFCDTVLAVPYHFIFSVSVPCTSLFKTVTVRCGHCTNLLSVNMRGL 71
+ + ++EQLCY+ C FC+ +LAV +VPC+SLF VTVRCGHCTNL SVNM
Sbjct: 3 NSVMATEQLCYIPCNFCNIILAV--------NVPCSSLFDIVTVRCGHCTNLWSVNM--- 51
Query: 72 LLPAANQLHLGHPFFTPQNLLEEIRNVPANMLMINPPNPADQSVMPVRVVDHQEIPKSPV 131
AA L P F N VP + + +P R+ + I + +
Sbjct: 52 ---AAALQSLSRPNFQATNYA-----VPEY-----GSSSRSHTKIPSRI-STRTITEQRI 97
Query: 132 VNRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGLM 188
VNRPPEKRQRVPSAYN+FIK+EIQRIKA NPDISHREAFS AAKNWAHFPHIHFGLM
Sbjct: 98 VNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLM 154
>sp|Q2QM17|YAB6_ORYSJ Protein YABBY 6 OS=Oryza sativa subsp. japonica GN=YAB6 PE=2 SV=1
Length = 207
Score = 167 bits (424), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 95/204 (46%), Positives = 118/204 (57%), Gaps = 41/204 (20%)
Query: 13 HLSSSEQLCYVHCTFCDTVLAVPYHFIFSVSVPCTSLFKTVTVRCGHCTNLLSVNMRGLL 72
++ +EQ+CYVHC FC+T+LAV SVP S+ VTVRCGHCTNLLSVN+RGL+
Sbjct: 4 QIAPAEQVCYVHCNFCNTILAV--------SVPGNSMLNIVTVRCGHCTNLLSVNLRGLM 55
Query: 73 ------------------LPAANQLHLGHP--FFTPQNLLEEIRNVPANMLMINPPNPAD 112
L + G+P F+ + ++R PA M++
Sbjct: 56 HSAPALQDHHHHHLQESGLSGCFRDQSGYPEFGFSAASSSSKLRLPPAAAAMVSYSQQNQ 115
Query: 113 QSVMPVRVVDHQEIPKSPVVNRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSA 172
Q + RPPEKRQRVPSAYNRFIK+EI+RIKA NPDISHREAFS
Sbjct: 116 QLEQALHA-------------RPPEKRQRVPSAYNRFIKEEIRRIKANNPDISHREAFST 162
Query: 173 AAKNWAHFPHIHFGLMPSDQPVKK 196
AAKNWAH+P+IHFGL P + KK
Sbjct: 163 AAKNWAHYPNIHFGLSPGHEGGKK 186
>sp|Q9XFB0|YAB2_ARATH Putative axial regulator YABBY 2 OS=Arabidopsis thaliana GN=YAB2
PE=2 SV=1
Length = 184
Score = 164 bits (416), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 99/202 (49%), Positives = 124/202 (61%), Gaps = 25/202 (12%)
Query: 16 SSEQLCYVHCTFCDTVLAVPYHFIFSVSVPCTSLFKTVTVRCGHCTNLLSVNMRGLLLPA 75
SSE++CYVHC+FC T+LAV SVP SLF VTVRCGHCTNLLS+N+ G+ L
Sbjct: 6 SSERVCYVHCSFCTTILAV--------SVPYASLFTLVTVRCGHCTNLLSLNI-GVSL-- 54
Query: 76 ANQLHLGHPFFTP--QNLLEEIRNVPANMLMINPPNPADQSVMPVRVVDHQEIPKSPVVN 133
H P L+ R +++ + +S + +E P+ P +
Sbjct: 55 -------HQTSAPPIHQDLQPHRQHTTSLVTRKDCASSSRSTNNLSENIDREAPRMPPI- 106
Query: 134 RPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGLMPSDQP 193
RPPEKRQRVPSAYNRFIK+EIQRIKA NP+ISHREAFS AAKNWAHFPHIHFGL D
Sbjct: 107 RPPEKRQRVPSAYNRFIKEEIQRIKACNPEISHREAFSTAAKNWAHFPHIHFGLKL-DGN 165
Query: 194 VKKTSVRQQQEGEDAMIKDGFF 215
K + Q G+ + +G++
Sbjct: 166 KKGKQLDQSVAGQKS---NGYY 184
>sp|Q10FZ7|YAB2_ORYSJ Protein YABBY 2 OS=Oryza sativa subsp. japonica GN=YAB2 PE=2 SV=1
Length = 186
Score = 162 bits (411), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 91/172 (52%), Positives = 108/172 (62%), Gaps = 22/172 (12%)
Query: 18 EQLCYVHCTFCDTVLAVPYHFIFSVSVPCTSLFKTVTVRCGHCTNLLSVNMRGLL--LPA 75
E +CYVHC FC+T IF+VSVP S+ VTVRCGHCT+LLSVN+RGL+ LPA
Sbjct: 10 EHVCYVHCNFCNT--------IFAVSVPSNSMLNIVTVRCGHCTSLLSVNLRGLVQALPA 61
Query: 76 ANQLHLGHPFFTPQNLLEEIRNVPANMLMINPPNPADQSVMPVRVVDHQEIPKSPVVNRP 135
+ L NL + N + + M D + + + RP
Sbjct: 62 EDHLQ--------DNLKMHNMSFRENYSEYGSSSRYGRVPMMFSKNDTEHM----LHVRP 109
Query: 136 PEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGL 187
PEKRQRVPSAYNRFIK+EI+RIKA NPDISHREAFS AAKNWAHFP+IHFGL
Sbjct: 110 PEKRQRVPSAYNRFIKEEIRRIKANNPDISHREAFSTAAKNWAHFPNIHFGL 161
>sp|Q8L556|YAB3_ORYSJ Protein YABBY 3 OS=Oryza sativa subsp. japonica GN=YAB3 PE=2 SV=1
Length = 313
Score = 151 bits (381), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 75/105 (71%), Positives = 86/105 (81%), Gaps = 7/105 (6%)
Query: 129 SPVVNRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGLM 188
+ V+NRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGLM
Sbjct: 209 TAVINRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGLM 268
Query: 189 PSDQPVKKTSVR-QQQEGEDAMIKDGFF------APAANVGVTPY 226
P Q +KKTS+ Q + +D ++K+G + A AAN+GV PY
Sbjct: 269 PDHQGLKKTSLLPQDHQRKDGLLKEGLYAAAAAAAAAANMGVAPY 313
Score = 68.2 bits (165), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 40/59 (67%), Positives = 46/59 (77%), Gaps = 8/59 (13%)
Query: 15 SSSEQLCYVHCTFCDTVLAVPYHFIFSVSVPCTSLFKTVTVRCGHCTNLLSVNMRGLLL 73
S EQLCYVHC +CDTVL VSVP +SLF+TVTVRCGHC++LL+VNMRGLLL
Sbjct: 55 SEQEQLCYVHCHYCDTVL--------VVSVPSSSLFETVTVRCGHCSSLLTVNMRGLLL 105
>sp|Q7XIM7|YAB1_ORYSJ Protein YABBY 1 OS=Oryza sativa subsp. japonica GN=YAB1 PE=2 SV=1
Length = 169
Score = 140 bits (354), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 82/179 (45%), Positives = 104/179 (58%), Gaps = 26/179 (14%)
Query: 16 SSEQLCYVHCTFCDTVLAVPYHFIFSVSVPCTSLFKTVTVRCGHCTNLLSVNMRGLLLPA 75
+SE +CYV+C +C+T+L V +VP + VTVRCGHCT +LS+++
Sbjct: 6 TSEHVCYVNCNYCNTILVV--------NVPNNCSYNIVTVRCGHCTMVLSMDLAPF---- 53
Query: 76 ANQLHLGHPFFTPQNLLEEIRNVPANMLM---INPPNPADQSVMPVRVVDHQEIPKSPVV 132
H T Q+ + R N I N + M Q++ SP+
Sbjct: 54 -------HQARTVQDHQVQNRGFQGNNFGSYDIASRNQRTSTAMYPMPTSQQQV--SPI- 103
Query: 133 NRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGLMPSD 191
RPPEKRQRVPSAYNRFIK+EIQRIK NP+ISHREAFSAAAKNWAH P +HFGL +D
Sbjct: 104 -RPPEKRQRVPSAYNRFIKEEIQRIKTSNPEISHREAFSAAAKNWAHLPRLHFGLSVAD 161
>sp|Q9LDT3|YAB4_ARATH Axial regulator YABBY 4 OS=Arabidopsis thaliana GN=YAB4 PE=1 SV=2
Length = 231
Score = 135 bits (340), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 82/178 (46%), Positives = 103/178 (57%), Gaps = 13/178 (7%)
Query: 19 QLCYVHCTFCDTVLAVPYHFIFSVSVPCTSLFKTVTVRCGHCTNLLSVN-MRGLLLPAAN 77
Q+C+V C FC T+L V SVP TSL VTVRCGHCT+LLSVN M+ +P
Sbjct: 20 QICHVQCGFCTTILLV--------SVPFTSLSMVVTVRCGHCTSLLSVNLMKASFIPLHL 71
Query: 78 QLHLGHPFFTPQNLLEEIRNVPANMLMINPPNPADQSVMPVRVVDHQEIPKS---PVVNR 134
L H T + + V +N + + V D+++ S VVN+
Sbjct: 72 LASLSHLDETGKEEVAATDGVEEEAWKVNQEKENSPTTL-VSSSDNEDEDVSRVYQVVNK 130
Query: 135 PPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGLMPSDQ 192
PPEKRQR PSAYN FIK+EI+R+KA NP ++H+EAFS AAKNWAHFP H SDQ
Sbjct: 131 PPEKRQRAPSAYNCFIKEEIRRLKAQNPSMAHKEAFSLAAKNWAHFPPAHNKRAASDQ 188
>sp|Q76EJ0|YABDL_ORYSJ Protein DROOPING LEAF OS=Oryza sativa subsp. japonica GN=DL PE=1
SV=1
Length = 194
Score = 131 bits (330), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 77/168 (45%), Positives = 101/168 (60%), Gaps = 26/168 (15%)
Query: 12 DHLSSSEQLCYVHCTFCDTVLAVPYHFIFSVSVPCTSLFKTVTVRCGHCTNLLSVNMRG- 70
D +S SE LCYV CT+C+TVLAV VPC L TVTV+CGHC NL ++ R
Sbjct: 2 DLVSPSEHLCYVRCTYCNTVLAV--------GVPCKRLMDTVTVKCGHCNNLSFLSPRPP 53
Query: 71 LLLPAANQLHLGHPFFTPQNLLEEIRNVPANMLMINPPNPADQSVMPVRVVDHQEIPKSP 130
++ P + H PF P + RN P + +++P ++ P++P
Sbjct: 54 MVQPLSPTDHPLGPFQGP--CTDCRRNQP--LPLVSP-------------TSNEGSPRAP 96
Query: 131 VVNRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWA 178
V +PPEK+ R+PSAYNRF+++EIQRIKA PDI HREAFS AAKNWA
Sbjct: 97 FVVKPPEKKHRLPSAYNRFMREEIQRIKAAKPDIPHREAFSMAAKNWA 144
>sp|Q8L925|CRC_ARATH Protein CRABS CLAW OS=Arabidopsis thaliana GN=CRC PE=1 SV=2
Length = 181
Score = 103 bits (256), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 65/164 (39%), Positives = 90/164 (54%), Gaps = 25/164 (15%)
Query: 17 SEQLCYVHCTFCDTVLAVPYHFIFSVSVPCTSLFKTVTVRCGHCTNLLSVNMRGLLLPAA 76
+E L YV C+ C+T+LAV +P + TVTV+CGHC N+ L
Sbjct: 18 AEHLYYVRCSICNTILAV--------GIPLKRMLDTVTVKCGHCG-----NLSFLTTTPP 64
Query: 77 NQLHLGHPFFTPQNLLEEIRNVPANMLMINPPNPADQSVMPVRVVDHQEIPKSPVVNRPP 136
Q H+ +L ++++ + + + S D P P V +PP
Sbjct: 65 LQGHV--------SLTLQMQSFGGS----DYKKGSSSSSSSSTSSDQPPSPSPPFVVKPP 112
Query: 137 EKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHF 180
EK+QR+PSAYNRF++DEIQRIK+ NP+I HREAFSAAAKNWA +
Sbjct: 113 EKKQRLPSAYNRFMRDEIQRIKSANPEIPHREAFSAAAKNWAKY 156
>sp|A2PZN8|YAB7_ORYSJ Protein YABBY 7 OS=Oryza sativa subsp. japonica GN=YAB7 PE=2 SV=1
Length = 169
Score = 94.4 bits (233), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 67/168 (39%), Positives = 94/168 (55%), Gaps = 21/168 (12%)
Query: 18 EQLCYVHCTFCDTVLAVPYHFIFSVSVPCTSLFKTVTVRCGHCTNLLS-VNMRGLLLPAA 76
E+L V C+FC TVL V SVPC+S+ + V V+CGHC+ +LS VN+ + A+
Sbjct: 14 ERLGCVQCSFCATVLLV--------SVPCSSVLRVVAVQCGHCSGILSAVNLPPSPVSAS 65
Query: 77 NQLHLGHPFFTPQNLLEEIRNVPANMLMINPPNPADQSVMPVRVVDHQEIPKSPVVNRPP 136
+L TPQ L + P + + D D + V N+PP
Sbjct: 66 IEL-------TPQEL--DAGPPPGEY---SDESSGDDREGRDAEDDAPAPAAAAVANKPP 113
Query: 137 EKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIH 184
++QR PSAYN F+K+EI+RIK+ P+I+H++AFS AAKNWAH P I
Sbjct: 114 GRKQRTPSAYNCFVKEEIKRIKSMEPNITHKQAFSTAAKNWAHLPRIQ 161
>sp|Q839D5|ECFA1_ENTFA Energy-coupling factor transporter ATP-binding protein EcfA 1
OS=Enterococcus faecalis (strain ATCC 700802 / V583)
GN=ecfA1 PE=3 SV=1
Length = 279
Score = 33.9 bits (76), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 48/106 (45%), Gaps = 7/106 (6%)
Query: 58 GHCTNLLSVNMRGLLLPAANQLHLGHPFFTPQNLLEEIRNVPANMLMINPPNPADQSVMP 117
G + L+ + GLLLPAA + +G N+ + R V M+ NP N S +
Sbjct: 43 GSGKSTLAKTINGLLLPAAGTIKVGGKELNEANVWDIRRMV--GMVFQNPDNQFVGSTVE 100
Query: 118 VRV---VDHQEIPKSPVVNRPPEKRQRVPSAYNRFIKDEIQRIKAG 160
V +++Q IP+ +V R + +RV F K E R+ G
Sbjct: 101 DDVAFGLENQGIPRDEMVERVHDALERVRML--DFAKREPARLSGG 144
>sp|Q03IS1|EFG_STRTD Elongation factor G OS=Streptococcus thermophilus (strain ATCC
BAA-491 / LMD-9) GN=fusA PE=3 SV=1
Length = 693
Score = 33.5 bits (75), Expect = 1.4, Method: Composition-based stats.
Identities = 24/91 (26%), Positives = 35/91 (38%), Gaps = 9/91 (9%)
Query: 99 PANMLMINPPNPADQSVMPVRVVDHQEIPKSPVVNRPPEKRQRVPSAY---------NRF 149
P LM+ P ADQ M + + E + V PE + V S +R
Sbjct: 405 PVIQLMVEPKTKADQDKMAIGLQKLAEEDPTFRVETNPETGETVISGMGELHLDVLVDRL 464
Query: 150 IKDEIQRIKAGNPDISHREAFSAAAKNWAHF 180
++ G P +S+RE F AA + F
Sbjct: 465 KREHKVEANVGAPQVSYRETFRAATQARGFF 495
>sp|Q5M2M6|EFG_STRT2 Elongation factor G OS=Streptococcus thermophilus (strain ATCC
BAA-250 / LMG 18311) GN=fusA PE=3 SV=1
Length = 693
Score = 33.5 bits (75), Expect = 1.4, Method: Composition-based stats.
Identities = 24/91 (26%), Positives = 35/91 (38%), Gaps = 9/91 (9%)
Query: 99 PANMLMINPPNPADQSVMPVRVVDHQEIPKSPVVNRPPEKRQRVPSAY---------NRF 149
P LM+ P ADQ M + + E + V PE + V S +R
Sbjct: 405 PVIQLMVEPKTKADQDKMAIGLQKLAEEDPTFRVETNPETGETVISGMGELHLDVLVDRL 464
Query: 150 IKDEIQRIKAGNPDISHREAFSAAAKNWAHF 180
++ G P +S+RE F AA + F
Sbjct: 465 KREHKVEANVGAPQVSYRETFRAATQARGFF 495
>sp|Q5LY21|EFG_STRT1 Elongation factor G OS=Streptococcus thermophilus (strain CNRZ
1066) GN=fusA PE=3 SV=1
Length = 693
Score = 33.5 bits (75), Expect = 1.4, Method: Composition-based stats.
Identities = 24/91 (26%), Positives = 35/91 (38%), Gaps = 9/91 (9%)
Query: 99 PANMLMINPPNPADQSVMPVRVVDHQEIPKSPVVNRPPEKRQRVPSAY---------NRF 149
P LM+ P ADQ M + + E + V PE + V S +R
Sbjct: 405 PVIQLMVEPKTKADQDKMAIGLQKLAEEDPTFRVETNPETGETVISGMGELHLDVLVDRL 464
Query: 150 IKDEIQRIKAGNPDISHREAFSAAAKNWAHF 180
++ G P +S+RE F AA + F
Sbjct: 465 KREHKVEANVGAPQVSYRETFRAATQARGFF 495
>sp|Q8RDM3|FMT_FUSNN Methionyl-tRNA formyltransferase OS=Fusobacterium nucleatum subsp.
nucleatum (strain ATCC 25586 / CIP 101130 / JCM 8532 /
LMG 13131) GN=fmt PE=3 SV=2
Length = 310
Score = 32.7 bits (73), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 8/59 (13%)
Query: 76 ANQLHLGHPF-FTPQNLLEEIRNVPANMLMINPPNPADQSVMPVRVVDHQEIPKSPVVN 133
AN L + P F L+EEIRN+ A+++++ A ++P V+D IPK V+N
Sbjct: 53 ANNLKIYQPENFKDNTLIEEIRNMQADLIVV----VAYGKILPKEVID---IPKYGVIN 104
>sp|P41882|YPT4_CAEEL Ankyrin repeat-containing protein F37A4.4 OS=Caenorhabditis elegans
GN=F37A4.4 PE=4 SV=2
Length = 1163
Score = 32.7 bits (73), Expect = 1.9, Method: Composition-based stats.
Identities = 30/111 (27%), Positives = 53/111 (47%), Gaps = 22/111 (19%)
Query: 54 TVRCGHCTNLLSVNMRGLLLPAANQ-----LHL----GHPFFTPQNLLEEIRNVPANMLM 104
+VR + TNLL RG + N+ LH+ G+ QNL+E + A+
Sbjct: 831 SVREINATNLLKAVKRGAYINVCNKYGNTALHVATRRGY-----QNLVEILIKHGADRSF 885
Query: 105 INPPNPADQSVMPVRVVDHQEIPKSPVVNRPPEKRQRVPSAYNRFIKDEIQ 155
+NP N + ++P V++QE K + E+ + + S YN++ K + +
Sbjct: 886 LNPQNKTAEQMIP---VNYQETHKEKI-----ERFKSIESIYNKYRKKKFK 928
>sp|Q9BT81|SOX7_HUMAN Transcription factor SOX-7 OS=Homo sapiens GN=SOX7 PE=1 SV=1
Length = 388
Score = 32.7 bits (73), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 6/54 (11%)
Query: 130 PVVNRPP-----EKRQRVP-SAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNW 177
P V RPP E R R P +A+ + KDE +R+ NPD+ + E K+W
Sbjct: 30 PAVPRPPGDKGSESRIRRPMNAFMVWAKDERKRLAVQNPDLHNAELSKMLGKSW 83
>sp|Q5AD73|SNX41_CANAL Sorting nexin-41 OS=Candida albicans (strain SC5314 / ATCC
MYA-2876) GN=SNX41 PE=3 SV=1
Length = 681
Score = 32.0 bits (71), Expect = 3.8, Method: Composition-based stats.
Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 12/50 (24%)
Query: 81 LGHPFFTPQ------NLLEE--IRNVPANMLMINPPNPADQ----SVMPV 118
L H FF P N L E + +P N+L+ NP NPADQ S++P+
Sbjct: 224 LLHKFFDPNYELCWYNALNEPPVSLIPDNLLLANPINPADQNGLYSLLPI 273
>sp|Q0II87|TFAM_BOVIN Transcription factor A, mitochondrial OS=Bos taurus GN=TFAM PE=2
SV=1
Length = 246
Score = 31.6 bits (70), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 4/65 (6%)
Query: 144 SAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFP----HIHFGLMPSDQPVKKTSV 199
++Y RF K+++ KA NPD + E AK W P I+ +D V K +
Sbjct: 55 TSYVRFSKEQLPIFKAQNPDAKNSELIKKIAKLWRELPDSEKKIYEDAYRADWQVYKEEI 114
Query: 200 RQQQE 204
+ QE
Sbjct: 115 NRIQE 119
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.134 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 88,384,328
Number of Sequences: 539616
Number of extensions: 3722210
Number of successful extensions: 8563
Number of sequences better than 100.0: 39
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 8495
Number of HSP's gapped (non-prelim): 44
length of query: 226
length of database: 191,569,459
effective HSP length: 113
effective length of query: 113
effective length of database: 130,592,851
effective search space: 14756992163
effective search space used: 14756992163
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)