Query 027215
Match_columns 226
No_of_seqs 130 out of 184
Neff 3.0
Searched_HMMs 29240
Date Mon Mar 25 10:38:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027215.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027215hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1hme_A High mobility group pro 97.8 3.5E-05 1.2E-09 54.1 5.3 46 135-180 3-48 (77)
2 1wz6_A HMG-box transcription f 97.7 4.4E-05 1.5E-09 54.5 5.1 46 135-180 4-49 (82)
3 3nm9_A HMG-D, high mobility gr 97.6 8.2E-05 2.8E-09 52.2 5.2 42 140-181 5-46 (73)
4 2cs1_A PMS1 protein homolog 1; 97.6 0.0001 3.4E-09 54.1 5.7 45 136-180 5-49 (92)
5 2e6o_A HMG box-containing prot 97.6 8E-05 2.7E-09 54.1 5.1 48 134-181 13-60 (87)
6 1hry_A Human SRY; DNA, DNA-bin 97.6 6.6E-05 2.3E-09 52.6 4.5 45 136-180 2-46 (76)
7 2crj_A SWI/SNF-related matrix- 97.6 0.00012 4.1E-09 53.6 5.8 47 134-180 3-49 (92)
8 1wgf_A Upstream binding factor 97.6 8.9E-05 3E-09 54.3 5.0 47 134-180 16-62 (90)
9 2co9_A Thymus high mobility gr 97.5 0.00012 4E-09 54.8 5.5 48 134-181 13-60 (102)
10 1j46_A SRY, sex-determining re 97.5 0.00014 4.9E-09 52.4 5.4 46 136-181 2-47 (85)
11 1wxl_A Single-strand recogniti 97.5 0.00014 4.8E-09 50.9 5.2 44 137-180 2-45 (73)
12 1k99_A Upstream binding factor 97.5 0.00015 5E-09 54.3 5.2 47 134-180 6-52 (99)
13 4euw_A Transcription factor SO 97.4 0.00019 6.6E-09 54.2 5.4 48 134-181 25-72 (106)
14 2eqz_A High mobility group pro 97.4 0.00021 7E-09 51.7 5.3 47 135-181 12-60 (86)
15 3f27_D Transcription factor SO 97.4 0.00018 6.1E-09 51.2 4.8 44 138-181 6-49 (83)
16 1i11_A Transcription factor SO 97.4 0.00027 9.3E-09 50.3 5.7 41 140-180 6-46 (81)
17 4a3n_A Transcription factor SO 97.4 0.00021 7.1E-09 49.0 4.8 41 140-180 4-44 (71)
18 1gt0_D Transcription factor SO 97.3 0.00035 1.2E-08 49.5 5.5 41 140-180 4-44 (80)
19 1ckt_A High mobility group 1 p 97.3 0.0003 1E-08 48.5 4.9 41 140-180 3-45 (71)
20 3u2b_C Transcription factor SO 97.3 0.00031 1.1E-08 49.4 4.8 42 140-181 4-45 (79)
21 2gzk_A Sex-determining region 97.2 0.00041 1.4E-08 54.6 5.6 48 134-181 84-131 (159)
22 1cg7_A Protein (NON histone pr 97.2 0.00013 4.4E-09 53.7 1.8 47 134-180 16-62 (93)
23 1aab_A High mobility group pro 97.1 0.00028 9.7E-09 50.4 3.4 46 135-180 4-51 (83)
24 2yrq_A High mobility group pro 97.1 0.00053 1.8E-08 54.9 5.4 47 135-181 98-144 (173)
25 2lhj_A High mobility group pro 97.1 0.0002 6.8E-09 52.9 2.5 48 134-181 18-67 (97)
26 2lef_A LEF-1 HMG, protein (lym 97.1 0.00067 2.3E-08 48.8 4.9 42 140-181 4-45 (86)
27 2d7l_A WD repeat and HMG-box D 97.0 0.0012 4.2E-08 48.2 5.6 41 140-180 7-48 (81)
28 2yrq_A High mobility group pro 96.9 0.0011 3.8E-08 53.0 5.5 48 134-181 11-60 (173)
29 3tq6_A Transcription factor A, 96.6 0.0016 5.4E-08 54.7 4.1 46 136-181 7-52 (214)
30 3tmm_A Transcription factor A, 96.6 0.0017 5.8E-08 55.3 4.1 47 135-181 38-84 (238)
31 2gzk_A Sex-determining region 96.4 0.0044 1.5E-07 48.7 5.1 46 136-181 2-47 (159)
32 3fgh_A Transcription factor A, 96.0 0.0055 1.9E-07 42.0 3.6 38 140-181 4-41 (67)
33 1l8y_A Upstream binding factor 95.8 0.011 3.7E-07 45.0 4.9 40 140-180 6-45 (91)
34 1v63_A Nucleolar transcription 94.6 0.048 1.7E-06 40.8 5.1 37 142-180 12-48 (101)
35 1v64_A Nucleolar transcription 94.6 0.039 1.3E-06 41.9 4.4 38 140-181 19-56 (108)
36 3tmm_A Transcription factor A, 93.6 0.019 6.6E-07 48.8 1.2 42 136-181 144-185 (238)
37 3tq6_A Transcription factor A, 93.6 0.02 6.9E-07 47.9 1.2 42 136-181 112-153 (214)
38 2yuk_A Myeloid/lymphoid or mix 92.7 0.017 5.7E-07 43.7 -0.5 41 138-180 22-62 (90)
39 2cto_A Novel protein; high mob 87.5 0.23 7.9E-06 37.3 1.8 39 140-180 12-53 (93)
40 1wii_A Hypothetical UPF0222 pr 62.5 4.1 0.00014 30.6 2.3 44 23-74 24-67 (85)
41 2k3r_A Ribonuclease P protein 55.5 7.2 0.00024 30.5 2.7 40 24-66 62-101 (123)
42 1x0t_A Ribonuclease P protein 51.7 10 0.00035 29.4 3.0 39 24-65 67-105 (120)
43 2ysl_A Tripartite motif-contai 45.7 15 0.00053 24.1 2.8 12 22-33 20-31 (73)
44 2k2d_A Ring finger and CHY zin 43.3 8.4 0.00029 28.2 1.2 33 18-64 33-65 (79)
45 3uky_C Nuclear CAP-binding pro 35.6 9.8 0.00034 24.4 0.5 7 137-143 26-32 (32)
46 2ysj_A Tripartite motif-contai 35.2 27 0.00092 22.4 2.6 11 23-33 21-31 (63)
47 2fiy_A Protein FDHE homolog; F 33.6 8.3 0.00028 34.4 -0.2 28 18-63 204-231 (309)
48 2e2z_A TIM15; protein import, 24.6 28 0.00095 27.1 1.4 13 51-63 35-47 (100)
49 2d74_B Translation initiation 24.1 22 0.00077 28.9 0.8 36 21-70 103-141 (148)
50 3he5_B Synzip2; heterodimeric 23.0 29 0.001 24.0 1.1 21 144-164 2-22 (52)
No 1
>1hme_A High mobility group protein fragment-B; DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1hmf_A 1nhm_A 1nhn_A 1hsm_A 1hsn_A 1j3c_A 1j3d_A 2yqi_A
Probab=97.78 E-value=3.5e-05 Score=54.14 Aligned_cols=46 Identities=24% Similarity=0.421 Sum_probs=41.7
Q ss_pred CCccCCCCchhhhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccC
Q 027215 135 PPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHF 180 (226)
Q Consensus 135 PPEKRQRvPSaYN~FmK~ei~riK~~nP~i~HkEaFs~aAknWa~~ 180 (226)
-|.+-.|-+|||..|+++.-..|++++|+++..|.-+.++..|+..
T Consensus 3 dp~~pKrP~saf~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~l 48 (77)
T 1hme_A 3 DPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNT 48 (77)
T ss_dssp CSSCCCCCCCTTHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhC
Confidence 4555667899999999999999999999999999999999999964
No 2
>1wz6_A HMG-box transcription factor BBX; bobby SOX homolog, HMG_BOX domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative; NMR {Mus musculus}
Probab=97.71 E-value=4.4e-05 Score=54.52 Aligned_cols=46 Identities=22% Similarity=0.314 Sum_probs=42.0
Q ss_pred CCccCCCCchhhhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccC
Q 027215 135 PPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHF 180 (226)
Q Consensus 135 PPEKRQRvPSaYN~FmK~ei~riK~~nP~i~HkEaFs~aAknWa~~ 180 (226)
+|.+-.|-+|||..|+++.-++|++++|+++..|.-+.++..|+..
T Consensus 4 ~~~~pkrP~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~l 49 (82)
T 1wz6_A 4 GSSGARRPMNAFLLFCKRHRSLVRQEHPRLDNRGATKILADWWAVL 49 (82)
T ss_dssp SCCCSCCCCCHHHHHHHHHHHHHHHHCSSSCTTHHHHHHHHHHHTC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhhC
Confidence 5566667899999999999999999999999999999999999964
No 3
>3nm9_A HMG-D, high mobility group protein D; DNA bending, non-sequence-specific, HMG chromosomal protein; HET: DNA; 2.85A {Drosophila melanogaster} SCOP: a.21.1.1 PDB: 1e7j_A* 1hma_A 1qrv_A*
Probab=97.61 E-value=8.2e-05 Score=52.15 Aligned_cols=42 Identities=26% Similarity=0.413 Sum_probs=39.4
Q ss_pred CCCchhhhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCC
Q 027215 140 QRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFP 181 (226)
Q Consensus 140 QRvPSaYN~FmK~ei~riK~~nP~i~HkEaFs~aAknWa~~P 181 (226)
.|-+|||..|+++.-.+|++++|+++..|.-+.++..|+..+
T Consensus 5 KrP~say~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls 46 (73)
T 3nm9_A 5 KRPLSAYALWLNSARESIKRENPGIKVTEVAKRGGELWRAMK 46 (73)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHHCS
T ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHcCC
Confidence 567899999999999999999999999999999999999764
No 4
>2cs1_A PMS1 protein homolog 1; DNA mismatch repair protein PMS1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.60 E-value=0.0001 Score=54.06 Aligned_cols=45 Identities=20% Similarity=0.266 Sum_probs=40.3
Q ss_pred CccCCCCchhhhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccC
Q 027215 136 PEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHF 180 (226)
Q Consensus 136 PEKRQRvPSaYN~FmK~ei~riK~~nP~i~HkEaFs~aAknWa~~ 180 (226)
|.+-.|-+|||..|+++.-++||++||+++..|.-+.++..|+..
T Consensus 5 p~~pKrP~say~lF~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~l 49 (92)
T 2cs1_A 5 SSGIKKPMSASALFVQDHRPQFLIENPKTSLEDATLQIEELWKTL 49 (92)
T ss_dssp CSSSCCCCCHHHHHHHHHHHHHHHHCCSSCHHHHHHHHHHHHHSS
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhcC
Confidence 444456799999999999999999999999999999999999964
No 5
>2e6o_A HMG box-containing protein 1; HMG-box domain, HMG-box transcription factor 1, high mobility group box transcription factor 1, structural genomics; NMR {Homo sapiens}
Probab=97.60 E-value=8e-05 Score=54.08 Aligned_cols=48 Identities=19% Similarity=0.250 Sum_probs=43.2
Q ss_pred CCCccCCCCchhhhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCC
Q 027215 134 RPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFP 181 (226)
Q Consensus 134 kPPEKRQRvPSaYN~FmK~ei~riK~~nP~i~HkEaFs~aAknWa~~P 181 (226)
+-|.+-.|-++||..|+++.-++|++++|+++..|.-+.++..|+..+
T Consensus 13 kdp~~pKrP~~af~lf~~~~r~~~~~~~P~~~~~eisk~lg~~Wk~ls 60 (87)
T 2e6o_A 13 TSPNKCKRPMNAFMLFAKKYRVEYTQMYPGKDNRAISVILGDRWKKMK 60 (87)
T ss_dssp CCCSSCCCCCCHHHHHHHHTHHHHHHHCTTSCHHHHHHHHHHHHHHSC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhhCC
Confidence 456666788999999999999999999999999999999999999743
No 6
>1hry_A Human SRY; DNA, DNA-binding protein, DNA binding protein/DNA complex; HET: DNA; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1hrz_A*
Probab=97.59 E-value=6.6e-05 Score=52.62 Aligned_cols=45 Identities=16% Similarity=0.359 Sum_probs=40.3
Q ss_pred CccCCCCchhhhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccC
Q 027215 136 PEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHF 180 (226)
Q Consensus 136 PEKRQRvPSaYN~FmK~ei~riK~~nP~i~HkEaFs~aAknWa~~ 180 (226)
|.+-.|-+|||..|+++.-++|++++|+++..|.-+.++..|+..
T Consensus 2 p~~pkrP~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~l 46 (76)
T 1hry_A 2 QDRVKRPMNAFIVWSRDQRRKMALENPRMRNSEISKQLGYQWKML 46 (76)
T ss_dssp -CCCCCCCCHHHHHHHHHHHHHHHHCSCCSSSHHHHHHHHHHHTC
T ss_pred cCCCCCCCCHHHHHHHHHHHHHHHHCcCCCHHHHHHHHHhHHHhC
Confidence 344567799999999999999999999999999999999999974
No 7
>2crj_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; structural DNA-binding protein BRAF35, DNA-bending; NMR {Mus musculus}
Probab=97.57 E-value=0.00012 Score=53.62 Aligned_cols=47 Identities=17% Similarity=0.431 Sum_probs=42.0
Q ss_pred CCCccCCCCchhhhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccC
Q 027215 134 RPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHF 180 (226)
Q Consensus 134 kPPEKRQRvPSaYN~FmK~ei~riK~~nP~i~HkEaFs~aAknWa~~ 180 (226)
|-|.+-.|-+|||..|+++.-.+|++++|+++..|.-+.++..|+..
T Consensus 3 kdp~~pKrP~~af~lF~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~l 49 (92)
T 2crj_A 3 SGSSGPKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKL 49 (92)
T ss_dssp CCCSSSCCCCCHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHcC
Confidence 34555567899999999999999999999999999999999999974
No 8
>1wgf_A Upstream binding factor 1; transcription factor, DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=97.57 E-value=8.9e-05 Score=54.26 Aligned_cols=47 Identities=23% Similarity=0.372 Sum_probs=42.7
Q ss_pred CCCccCCCCchhhhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccC
Q 027215 134 RPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHF 180 (226)
Q Consensus 134 kPPEKRQRvPSaYN~FmK~ei~riK~~nP~i~HkEaFs~aAknWa~~ 180 (226)
+.|.+-.|-+|||..|+++.-++|++++|+++..|.-+.++..|+..
T Consensus 16 kdp~~pKrP~say~lF~~~~r~~~k~~~P~~~~~eisk~lg~~Wk~l 62 (90)
T 1wgf_A 16 GGSEKPKRPVSAMFIFSEEKRRQLQEERPELSESELTRLLARMWNDL 62 (90)
T ss_dssp SCCCCCCCCCCHHHHHHHHTHHHHHHHCTTSCHHHHHHHHHHHHHHS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhC
Confidence 45666678899999999999999999999999999999999999974
No 9
>2co9_A Thymus high mobility group box protein TOX; TOX protein, HMG box domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=97.54 E-value=0.00012 Score=54.84 Aligned_cols=48 Identities=29% Similarity=0.477 Sum_probs=43.0
Q ss_pred CCCccCCCCchhhhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCC
Q 027215 134 RPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFP 181 (226)
Q Consensus 134 kPPEKRQRvPSaYN~FmK~ei~riK~~nP~i~HkEaFs~aAknWa~~P 181 (226)
+.|.+-.|-++||..|+++.-.+|++++|+++..|.-+.++..|+..+
T Consensus 13 kdp~~pKrP~say~lF~~~~r~~i~~~~P~~~~~eisk~lg~~Wk~ls 60 (102)
T 2co9_A 13 KDPNEPQKPVSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMWDGLG 60 (102)
T ss_dssp CCCCSCCCCCCHHHHTHHHHHHHHHHHCTTSCHHHHHHHHHHHHTTCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHccCC
Confidence 456666778999999999999999999999999999999999999753
No 10
>1j46_A SRY, sex-determining region Y protein; MALE sex determining factor, SRY, sex-reversal mutation; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1j47_A
Probab=97.51 E-value=0.00014 Score=52.38 Aligned_cols=46 Identities=15% Similarity=0.352 Sum_probs=40.8
Q ss_pred CccCCCCchhhhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCC
Q 027215 136 PEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFP 181 (226)
Q Consensus 136 PEKRQRvPSaYN~FmK~ei~riK~~nP~i~HkEaFs~aAknWa~~P 181 (226)
|.+-.|-+|||..|+++.-+.|++++|+++..|.-+.++..|+..+
T Consensus 2 p~~pKRP~~af~lf~~~~r~~~~~~~P~~~~~eisk~lg~~Wk~ls 47 (85)
T 1j46_A 2 QDRVKRPMNAFIVWSRDQRRKMALENPRMRNSEISKQLGYQWKMLT 47 (85)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHTTSC
T ss_pred cCcCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCC
Confidence 3444567899999999999999999999999999999999999743
No 11
>1wxl_A Single-strand recognition protein; FACT, SSRP1, HMG, DNA binding protein; NMR {Drosophila melanogaster}
Probab=97.51 E-value=0.00014 Score=50.94 Aligned_cols=44 Identities=23% Similarity=0.422 Sum_probs=40.0
Q ss_pred ccCCCCchhhhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccC
Q 027215 137 EKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHF 180 (226)
Q Consensus 137 EKRQRvPSaYN~FmK~ei~riK~~nP~i~HkEaFs~aAknWa~~ 180 (226)
.+-.|-+|||..|+++.-.+|+++||+++..|.-+.++..|+..
T Consensus 2 ~~pKrP~say~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~l 45 (73)
T 1wxl_A 2 HMPKRATTAFMLWLNDTRESIKRENPGIKVTEIAKKGGEMWKEL 45 (73)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTC
T ss_pred ccCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhh
Confidence 34456789999999999999999999999999999999999974
No 12
>1k99_A Upstream binding factor 1; alpha-helix, L-shape, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1
Probab=97.47 E-value=0.00015 Score=54.31 Aligned_cols=47 Identities=15% Similarity=0.338 Sum_probs=42.2
Q ss_pred CCCccCCCCchhhhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccC
Q 027215 134 RPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHF 180 (226)
Q Consensus 134 kPPEKRQRvPSaYN~FmK~ei~riK~~nP~i~HkEaFs~aAknWa~~ 180 (226)
+.|.+-.|-+|||..|+++.-..|++++|+++..|.-+.++..|+..
T Consensus 6 kdp~~PKRP~saf~lF~~~~r~~ik~~~P~~~~~eisk~lg~~Wk~l 52 (99)
T 1k99_A 6 KHPDFPKKPLTPYFRFFMEKRAKYAKLHPEMSNLDLTKILSKKYKEL 52 (99)
T ss_dssp SSSSSCCCSCCHHHHHHHHHHHHHHTTCTTSCSHHHHHHHHHHHHHS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhC
Confidence 44555667899999999999999999999999999999999999963
No 13
>4euw_A Transcription factor SOX-9; protein-DNA complex, HMG domain, activator, DNA-binding, NUC transcription; HET: DNA; 2.77A {Homo sapiens}
Probab=97.42 E-value=0.00019 Score=54.23 Aligned_cols=48 Identities=13% Similarity=0.243 Sum_probs=41.7
Q ss_pred CCCccCCCCchhhhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCC
Q 027215 134 RPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFP 181 (226)
Q Consensus 134 kPPEKRQRvPSaYN~FmK~ei~riK~~nP~i~HkEaFs~aAknWa~~P 181 (226)
+.|.+-.|-++||..|+++.-.+|++++|+++..|.-+.++..|+..+
T Consensus 25 k~~~~pKRP~naf~lF~~~~r~~~k~~~P~~~~~eisk~lg~~Wk~ls 72 (106)
T 4euw_A 25 KNKPHVKRPMNAFMVWAQAARRKLADQYPHLHNAELSKTLGKLWRLLN 72 (106)
T ss_dssp ---CCCCCCCCHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHTTCC
T ss_pred CCCCcCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHcCC
Confidence 566667788999999999999999999999999999999999998754
No 14
>2eqz_A High mobility group protein B3; HMG-box domain, mobility group protein 2A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.42 E-value=0.00021 Score=51.67 Aligned_cols=47 Identities=23% Similarity=0.393 Sum_probs=40.4
Q ss_pred CCccCCCCchhhhHHHHHHHHHHHhcCCCCCH--HHHHHHHHHhhccCC
Q 027215 135 PPEKRQRVPSAYNRFIKDEIQRIKAGNPDISH--REAFSAAAKNWAHFP 181 (226)
Q Consensus 135 PPEKRQRvPSaYN~FmK~ei~riK~~nP~i~H--kEaFs~aAknWa~~P 181 (226)
-|.+-.|-+|||..|+++.-++|++++|+++. .|.-+.++..|+..+
T Consensus 12 dp~~PKrP~say~lF~~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~ls 60 (86)
T 2eqz_A 12 DPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMS 60 (86)
T ss_dssp CSSSCCCCCCHHHHHHHHHHHHHHHHCTTSCCCHHHHHHHHHHHHHSSC
T ss_pred CCCCCCCCCcHHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHhCC
Confidence 34444667899999999999999999999974 999999999998643
No 15
>3f27_D Transcription factor SOX-17; protein-DNA complex, HMG domain, endodermal, activator, DNA- nucleus, transcription regulation, transcrip complex; HET: DNA; 2.75A {Mus musculus} SCOP: a.21.1.1 PDB: 2yul_A
Probab=97.41 E-value=0.00018 Score=51.16 Aligned_cols=44 Identities=27% Similarity=0.475 Sum_probs=39.4
Q ss_pred cCCCCchhhhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCC
Q 027215 138 KRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFP 181 (226)
Q Consensus 138 KRQRvPSaYN~FmK~ei~riK~~nP~i~HkEaFs~aAknWa~~P 181 (226)
|-.|-+|||..|+++.-..|++++|++++.|.-+.++..|+..+
T Consensus 6 ~pKrP~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls 49 (83)
T 3f27_D 6 RIRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKALT 49 (83)
T ss_dssp -CCCCCCHHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHSC
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhcCC
Confidence 34577899999999999999999999999999999999998743
No 16
>1i11_A Transcription factor SOX-5; HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein, DNA sequence specific, testis determining.; NMR {Mus musculus} SCOP: a.21.1.1
Probab=97.41 E-value=0.00027 Score=50.25 Aligned_cols=41 Identities=22% Similarity=0.391 Sum_probs=38.4
Q ss_pred CCCchhhhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccC
Q 027215 140 QRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHF 180 (226)
Q Consensus 140 QRvPSaYN~FmK~ei~riK~~nP~i~HkEaFs~aAknWa~~ 180 (226)
.|-+|||..|+++.-+.|++++|++++.|.-+.++..|+..
T Consensus 6 kRP~naf~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~l 46 (81)
T 1i11_A 6 KRPMNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKAM 46 (81)
T ss_dssp CCSCCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHTTS
T ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhhhhC
Confidence 46789999999999999999999999999999999999964
No 17
>4a3n_A Transcription factor SOX-17; 2.40A {Homo sapiens} SCOP: a.21.1.0
Probab=97.39 E-value=0.00021 Score=49.04 Aligned_cols=41 Identities=29% Similarity=0.507 Sum_probs=38.0
Q ss_pred CCCchhhhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccC
Q 027215 140 QRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHF 180 (226)
Q Consensus 140 QRvPSaYN~FmK~ei~riK~~nP~i~HkEaFs~aAknWa~~ 180 (226)
.|-+|||..|+++.-+.|++++|++++.|.-+.++..|+..
T Consensus 4 krP~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~l 44 (71)
T 4a3n_A 4 RRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKAL 44 (71)
T ss_dssp -CCCCHHHHHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhcC
Confidence 46789999999999999999999999999999999999864
No 18
>1gt0_D Transcription factor SOX-2; POU factors, SOX proteins; 2.6A {Mus musculus} SCOP: a.21.1.1 PDB: 2le4_A 1o4x_B
Probab=97.33 E-value=0.00035 Score=49.47 Aligned_cols=41 Identities=15% Similarity=0.357 Sum_probs=38.4
Q ss_pred CCCchhhhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccC
Q 027215 140 QRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHF 180 (226)
Q Consensus 140 QRvPSaYN~FmK~ei~riK~~nP~i~HkEaFs~aAknWa~~ 180 (226)
.|-+|||..|+++.-..|++++|+++..|.-+.++..|+..
T Consensus 4 krP~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~l 44 (80)
T 1gt0_D 4 KRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLL 44 (80)
T ss_dssp CCCCCHHHHHHHHHHHHHHTTSTTSCHHHHHHHHHHHHTTS
T ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhC
Confidence 46789999999999999999999999999999999999864
No 19
>1ckt_A High mobility group 1 protein; high-mobility group domain, BENT DNA, protein-drug-DNA compl regulation-DNA complex; HET: DNA 5IU; 2.50A {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1j3x_A
Probab=97.31 E-value=0.0003 Score=48.51 Aligned_cols=41 Identities=22% Similarity=0.334 Sum_probs=37.6
Q ss_pred CCCchhhhHHHHHHHHHHHhcCCCCCH--HHHHHHHHHhhccC
Q 027215 140 QRVPSAYNRFIKDEIQRIKAGNPDISH--REAFSAAAKNWAHF 180 (226)
Q Consensus 140 QRvPSaYN~FmK~ei~riK~~nP~i~H--kEaFs~aAknWa~~ 180 (226)
.|-+|||..|+++.-+.||++||+++. .|.-+.++..|+..
T Consensus 3 KrP~say~~F~~~~r~~~~~~~p~~~~~~~eisk~lg~~Wk~l 45 (71)
T 1ckt_A 3 RGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTM 45 (71)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHhhC
Confidence 467899999999999999999999976 99999999999863
No 20
>3u2b_C Transcription factor SOX-4; HMG domain, transcriptional regulation, transcription-DNA CO; HET: DNA; 2.40A {Mus musculus} SCOP: a.21.1.1
Probab=97.29 E-value=0.00031 Score=49.37 Aligned_cols=42 Identities=21% Similarity=0.354 Sum_probs=38.6
Q ss_pred CCCchhhhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCC
Q 027215 140 QRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFP 181 (226)
Q Consensus 140 QRvPSaYN~FmK~ei~riK~~nP~i~HkEaFs~aAknWa~~P 181 (226)
.|-+|||..|+++.-..|++++|++++.|.-+.++..|+..+
T Consensus 4 KRP~naf~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls 45 (79)
T 3u2b_C 4 KRPMNAFMVWSQIERRKIMEQSPDMHNAEISKRLGKRWKLLK 45 (79)
T ss_dssp CCCCCHHHHHHHHHHHHHHTTSTTSCHHHHHHHHHHHHHHSC
T ss_pred CCCCCHHHHHHHHHHHHHHHHCcCCCHHHHHHHHHHHHHhCC
Confidence 467899999999999999999999999999999999998643
No 21
>2gzk_A Sex-determining region on Y / HMGB1; protein-DNA complex, HMG BOX, amphoterin, DNA/structural protein complex; NMR {Homo sapiens} SCOP: a.21.1.1 a.21.1.1
Probab=97.25 E-value=0.00041 Score=54.59 Aligned_cols=48 Identities=23% Similarity=0.425 Sum_probs=42.4
Q ss_pred CCCccCCCCchhhhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCC
Q 027215 134 RPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFP 181 (226)
Q Consensus 134 kPPEKRQRvPSaYN~FmK~ei~riK~~nP~i~HkEaFs~aAknWa~~P 181 (226)
+-|.+-.|-+|||..|+++.-.+|++++|+++..|.-+.++..|+..+
T Consensus 84 kdp~~pKrp~say~lf~~~~r~~~~~~~p~~~~~ei~k~lg~~Wk~ls 131 (159)
T 2gzk_A 84 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTA 131 (159)
T ss_dssp CCTTCCCCCCCHHHHHHHHHHHHHHHHCSCCCHHHHHHHHHHHHHHSC
T ss_pred cccccccccccccchhhHhhHHHHHHhCCCCCHHHHHHHHHHHHHhCC
Confidence 345555678999999999999999999999999999999999999743
No 22
>1cg7_A Protein (NON histone protein 6 A); HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.21.1.1 PDB: 1j5n_A 1lwm_A
Probab=97.16 E-value=0.00013 Score=53.71 Aligned_cols=47 Identities=23% Similarity=0.470 Sum_probs=42.6
Q ss_pred CCCccCCCCchhhhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccC
Q 027215 134 RPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHF 180 (226)
Q Consensus 134 kPPEKRQRvPSaYN~FmK~ei~riK~~nP~i~HkEaFs~aAknWa~~ 180 (226)
+.|.+-.|-+|||..|+++.-..|+++||+++..|.-+.++..|+..
T Consensus 16 kdp~~pKrP~saf~lF~~~~r~~~~~~~P~~~~~eisk~lg~~Wk~l 62 (93)
T 1cg7_A 16 KDPNAPKRALSAYMFFANENRDIVRSENPDITFGQVGKKLGEKWKAL 62 (93)
T ss_dssp CCSSCCCSCCCHHHHHHHHHTSTTTTTCTTSCHHHHTTTHHHHHHTT
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhC
Confidence 45666678899999999999999999999999999999999999974
No 23
>1aab_A High mobility group protein; HMG-BOX, DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1
Probab=97.15 E-value=0.00028 Score=50.36 Aligned_cols=46 Identities=24% Similarity=0.396 Sum_probs=40.0
Q ss_pred CCccCCCCchhhhHHHHHHHHHHHhcCCCCCH--HHHHHHHHHhhccC
Q 027215 135 PPEKRQRVPSAYNRFIKDEIQRIKAGNPDISH--REAFSAAAKNWAHF 180 (226)
Q Consensus 135 PPEKRQRvPSaYN~FmK~ei~riK~~nP~i~H--kEaFs~aAknWa~~ 180 (226)
-|.+-.|-+|||..|+++.-..|++++|+++. .|.-+.++..|+..
T Consensus 4 dp~~PKrP~say~lF~~~~r~~~~~~~p~~~~~~~eisk~lg~~Wk~l 51 (83)
T 1aab_A 4 DPKKPRGKMSSYAFFVQTSREEHKKKHPDASVNFSEFSKKCSERWKTM 51 (83)
T ss_dssp CTTCCCCCCCHHHHHHHHHHHHHTTSCTTTCCCSSSSHHHHHHHHTTS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHhC
Confidence 34555678899999999999999999999875 99999999999863
No 24
>2yrq_A High mobility group protein B1; HMG box domain, DNA binding, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.15 E-value=0.00053 Score=54.89 Aligned_cols=47 Identities=23% Similarity=0.415 Sum_probs=42.0
Q ss_pred CCccCCCCchhhhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCC
Q 027215 135 PPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFP 181 (226)
Q Consensus 135 PPEKRQRvPSaYN~FmK~ei~riK~~nP~i~HkEaFs~aAknWa~~P 181 (226)
-|.+-.|-+|||..|+++...+|++++|+++..|.-+.++..|+..+
T Consensus 98 dp~~pKrP~saf~lf~~~~r~~~~~~~p~~~~~ei~k~lg~~Wk~ls 144 (173)
T 2yrq_A 98 DPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTA 144 (173)
T ss_dssp CSSSCCCCCCHHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHSC
T ss_pred CCccccCcccHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCC
Confidence 45555677899999999999999999999999999999999999743
No 25
>2lhj_A High mobility group protein homolog NHP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid; NMR {Babesia bovis}
Probab=97.13 E-value=0.0002 Score=52.93 Aligned_cols=48 Identities=25% Similarity=0.395 Sum_probs=43.6
Q ss_pred CCCccCCCCchhhhHHHHHHHHHHHhcCCCCC--HHHHHHHHHHhhccCC
Q 027215 134 RPPEKRQRVPSAYNRFIKDEIQRIKAGNPDIS--HREAFSAAAKNWAHFP 181 (226)
Q Consensus 134 kPPEKRQRvPSaYN~FmK~ei~riK~~nP~i~--HkEaFs~aAknWa~~P 181 (226)
+.|.+-.|-+|||..|+++.-.+|++++|+++ ..|.-+.++..|+..+
T Consensus 18 kdp~~pKrP~say~lF~~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~ls 67 (97)
T 2lhj_A 18 KDPNAPKRALSSYMFFAKEKRVEIIAENPEIAKDVAAIGKMIGAAWNALS 67 (97)
T ss_dssp SCCCCCCCCCCSSTHHHHGGGGGHHHHCTTSTTCSSHHHHHHHHTSSSSC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCccHHHHHHHHHHHHHhCC
Confidence 56677778899999999999999999999999 9999999999999743
No 26
>2lef_A LEF-1 HMG, protein (lymphoid enhancer-binding factor); LEF1, HMG, TCR-A, transcription factor; HET: DNA; NMR {Mus musculus} SCOP: a.21.1.1
Probab=97.09 E-value=0.00067 Score=48.82 Aligned_cols=42 Identities=10% Similarity=0.188 Sum_probs=38.6
Q ss_pred CCCchhhhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCC
Q 027215 140 QRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFP 181 (226)
Q Consensus 140 QRvPSaYN~FmK~ei~riK~~nP~i~HkEaFs~aAknWa~~P 181 (226)
-|-+|||..|+++.-+.|++++|+++..|.-+.++..|+..+
T Consensus 4 KRP~naf~lf~~~~r~~~~~~~P~~~~~eisk~lg~~Wk~ls 45 (86)
T 2lef_A 4 KKPLNAFMLYMKEMRANVVAESTLKESAAINQILGRRWHALS 45 (86)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHTTSC
T ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhcCC
Confidence 467899999999999999999999999999999999999643
No 27
>2d7l_A WD repeat and HMG-box DNA binding protein 1; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.98 E-value=0.0012 Score=48.22 Aligned_cols=41 Identities=15% Similarity=0.350 Sum_probs=38.0
Q ss_pred CCCchhhhHHHHHHHHHHHhcCCCCC-HHHHHHHHHHhhccC
Q 027215 140 QRVPSAYNRFIKDEIQRIKAGNPDIS-HREAFSAAAKNWAHF 180 (226)
Q Consensus 140 QRvPSaYN~FmK~ei~riK~~nP~i~-HkEaFs~aAknWa~~ 180 (226)
.|-+|||..|+++.-.+||++||+++ ..|.-+.++..|+..
T Consensus 7 KRP~say~lF~~e~R~~ik~~~P~~~~~~eisK~lge~Wk~l 48 (81)
T 2d7l_A 7 GRPKTGFQMWLEENRSNILSDNPDFSDEADIIKEGMIRFRVL 48 (81)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHCTTCCSHHHHHHHHHHHHSSS
T ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHcC
Confidence 45699999999999999999999998 999999999999864
No 28
>2yrq_A High mobility group protein B1; HMG box domain, DNA binding, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.94 E-value=0.0011 Score=53.00 Aligned_cols=48 Identities=21% Similarity=0.385 Sum_probs=42.1
Q ss_pred CCCccCCCCchhhhHHHHHHHHHHHhcCCC--CCHHHHHHHHHHhhccCC
Q 027215 134 RPPEKRQRVPSAYNRFIKDEIQRIKAGNPD--ISHREAFSAAAKNWAHFP 181 (226)
Q Consensus 134 kPPEKRQRvPSaYN~FmK~ei~riK~~nP~--i~HkEaFs~aAknWa~~P 181 (226)
+-|.+-.|-+|||..|+++.-..|+++||+ ++-.|..+.++..|+..+
T Consensus 11 ~dp~~PKrp~say~lF~~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~ls 60 (173)
T 2yrq_A 11 GDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMS 60 (173)
T ss_dssp CCSSSCCCCCCHHHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHSC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHhCC
Confidence 445566788999999999999999999999 689999999999998753
No 29
>3tq6_A Transcription factor A, mitochondrial; transcription, transcription regulation, mitochondrion; HET: DNA BRU 1PE; 2.45A {Homo sapiens}
Probab=96.60 E-value=0.0016 Score=54.70 Aligned_cols=46 Identities=30% Similarity=0.532 Sum_probs=40.8
Q ss_pred CccCCCCchhhhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCC
Q 027215 136 PEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFP 181 (226)
Q Consensus 136 PEKRQRvPSaYN~FmK~ei~riK~~nP~i~HkEaFs~aAknWa~~P 181 (226)
|.+-.|-+|||..|+++....|+++||+++..|..+.++..|+..+
T Consensus 7 p~~PKrP~say~lF~~~~r~~~k~~~P~~~~~eisk~lge~Wk~Ls 52 (214)
T 3tq6_A 7 ASCPKKPVSSYLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELP 52 (214)
T ss_dssp HHSCCCCCCHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHSC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHccC
Confidence 3344567899999999999999999999999999999999999754
No 30
>3tmm_A Transcription factor A, mitochondrial; HMG, high mobility group, transcription, LSP1, mitochon transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens}
Probab=96.55 E-value=0.0017 Score=55.29 Aligned_cols=47 Identities=30% Similarity=0.504 Sum_probs=42.3
Q ss_pred CCccCCCCchhhhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCC
Q 027215 135 PPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFP 181 (226)
Q Consensus 135 PPEKRQRvPSaYN~FmK~ei~riK~~nP~i~HkEaFs~aAknWa~~P 181 (226)
-|.+-.|-+|||..|+++....||++||+++..|..+.++..|+..+
T Consensus 38 ~p~~PKrP~say~lF~~e~r~~~k~~~P~~~~~eisk~lge~Wk~Ls 84 (238)
T 3tmm_A 38 LASCPKKPVSSYLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELP 84 (238)
T ss_dssp HHHSCCCCCCHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCC
Confidence 45666788999999999999999999999999999999999998743
No 31
>2gzk_A Sex-determining region on Y / HMGB1; protein-DNA complex, HMG BOX, amphoterin, DNA/structural protein complex; NMR {Homo sapiens} SCOP: a.21.1.1 a.21.1.1
Probab=96.37 E-value=0.0044 Score=48.66 Aligned_cols=46 Identities=15% Similarity=0.352 Sum_probs=41.4
Q ss_pred CccCCCCchhhhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCC
Q 027215 136 PEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFP 181 (226)
Q Consensus 136 PEKRQRvPSaYN~FmK~ei~riK~~nP~i~HkEaFs~aAknWa~~P 181 (226)
|++..|-++||-.|++++-.+|++++|+++..|.-+.++..|+..+
T Consensus 2 ~~~~Krp~~af~~~~~~~~~ki~~~~P~~~~~eisk~lg~~Wk~ls 47 (159)
T 2gzk_A 2 QDRVKRPMNAFIVWSRDQRRKMALENPRMRNSEISKQLGYQWKMLT 47 (159)
T ss_dssp TTCCCCCCCHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHSC
T ss_pred cCCCCCCCcHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhh
Confidence 4556677899999999999999999999999999999999998654
No 32
>3fgh_A Transcription factor A, mitochondrial; HMG domain, mitochondrial transcription, activator, DNA- binding, mitochondrion, phosphoprotein; 1.35A {Homo sapiens}
Probab=96.01 E-value=0.0055 Score=41.97 Aligned_cols=38 Identities=29% Similarity=0.647 Sum_probs=33.7
Q ss_pred CCCchhhhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCC
Q 027215 140 QRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFP 181 (226)
Q Consensus 140 QRvPSaYN~FmK~ei~riK~~nP~i~HkEaFs~aAknWa~~P 181 (226)
.|-+|||..|+++.-..+|..+| .|..+.++..|+..+
T Consensus 4 KrP~say~~F~~~~r~~~k~~~p----~ei~k~lg~~Wk~ls 41 (67)
T 3fgh_A 4 KRPRSAYNVYVAERFQEAKGDSP----QEKLKTVKENWKNLS 41 (67)
T ss_dssp CCCCCHHHHHHHHHHHHHCSSSH----HHHHHHHHHHHHTCC
T ss_pred CCCCCHHHHHHHHHHHHHHhcCH----HHHHHHHHHHHhhCC
Confidence 46779999999999999999987 599999999999754
No 33
>1l8y_A Upstream binding factor 1; HUBF, HMG box 5, DNA binding domain, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1l8z_A 2hdz_A
Probab=95.85 E-value=0.011 Score=44.98 Aligned_cols=40 Identities=15% Similarity=0.177 Sum_probs=36.8
Q ss_pred CCCchhhhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccC
Q 027215 140 QRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHF 180 (226)
Q Consensus 140 QRvPSaYN~FmK~ei~riK~~nP~i~HkEaFs~aAknWa~~ 180 (226)
-|-+|||+.|+.+...++++++|+ ...|.=+.+...|+..
T Consensus 6 KrP~SAy~lf~~~~r~~~k~~~p~-~~~evsK~lGe~Wk~l 45 (91)
T 1l8y_A 6 ESPKRAEEIWQQSVIGDYLARFKN-DRVKALKAMEMTWNNM 45 (91)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHTTS-THHHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHhcC
Confidence 457999999999999999999999 9999999999999873
No 34
>1v63_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: a.21.1.1
Probab=94.64 E-value=0.048 Score=40.83 Aligned_cols=37 Identities=11% Similarity=0.346 Sum_probs=30.6
Q ss_pred CchhhhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccC
Q 027215 142 VPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHF 180 (226)
Q Consensus 142 vPSaYN~FmK~ei~riK~~nP~i~HkEaFs~aAknWa~~ 180 (226)
-+|||..|+++.++ +.++++++..|.-+.++..|+..
T Consensus 12 P~say~lF~~e~~~--~p~~~~~~~~eisK~lge~Wk~l 48 (101)
T 1v63_A 12 PMNGYQKFSQELLS--NGELNHLPLKERMVEIGSRWQRI 48 (101)
T ss_dssp CSSSHHHHHHHHHH--HCTTTTSCHHHHHHHHHHHHTTS
T ss_pred CCCHHHHHHHHHHh--CCCCCCCCHHHHHHHHHHHHHhC
Confidence 58999999999964 44556688899999999999964
No 35
>1v64_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=94.56 E-value=0.039 Score=41.91 Aligned_cols=38 Identities=16% Similarity=0.483 Sum_probs=34.3
Q ss_pred CCCchhhhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCC
Q 027215 140 QRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFP 181 (226)
Q Consensus 140 QRvPSaYN~FmK~ei~riK~~nP~i~HkEaFs~aAknWa~~P 181 (226)
.|-+|||..|+++.-++|| +++..|.-+.++..|+..+
T Consensus 19 KrP~say~lF~~e~r~~~k----~~~~~eisk~lg~~Wk~Ls 56 (108)
T 1v64_A 19 KPPPNSYSLYCAELMANMK----DVPSTERMVLCSQQWKLLS 56 (108)
T ss_dssp CCCSSHHHHHHHHHHHHCT----TSCHHHHHHHHHHHHHHSC
T ss_pred CCCCCHHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHhCC
Confidence 4568999999999999998 8999999999999999754
No 36
>3tmm_A Transcription factor A, mitochondrial; HMG, high mobility group, transcription, LSP1, mitochon transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens}
Probab=93.61 E-value=0.019 Score=48.76 Aligned_cols=42 Identities=29% Similarity=0.574 Sum_probs=36.3
Q ss_pred CccCCCCchhhhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCC
Q 027215 136 PEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFP 181 (226)
Q Consensus 136 PEKRQRvPSaYN~FmK~ei~riK~~nP~i~HkEaFs~aAknWa~~P 181 (226)
|.+-.|-+|||+.|+++...+||.++|+ |..+.++..|+..+
T Consensus 144 p~~PKrP~say~lF~~e~r~~~k~~~p~----ei~k~lg~~Wk~ls 185 (238)
T 3tmm_A 144 LGKPKRPRSAYNVYVAERFQEAKGDSPQ----EKLKTVKENWKNLS 185 (238)
T ss_dssp TTCCCCCCCHHHHHHHHHTTTSCCSSHH----HHHHHHHHHHHTCC
T ss_pred cCCCCCCCcHHHHHHHHHHHHHhccCHH----HHHHHHHHHHHhCC
Confidence 4455678999999999999999998886 89999999999753
No 37
>3tq6_A Transcription factor A, mitochondrial; transcription, transcription regulation, mitochondrion; HET: DNA BRU 1PE; 2.45A {Homo sapiens}
Probab=93.58 E-value=0.02 Score=47.93 Aligned_cols=42 Identities=29% Similarity=0.574 Sum_probs=36.0
Q ss_pred CccCCCCchhhhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCC
Q 027215 136 PEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFP 181 (226)
Q Consensus 136 PEKRQRvPSaYN~FmK~ei~riK~~nP~i~HkEaFs~aAknWa~~P 181 (226)
|.+-.|-+|||+.|+++...+||.++|+ |..+.++..|+..+
T Consensus 112 p~~PKrP~say~lF~~e~r~~~k~~~p~----ei~k~lg~~Wk~ls 153 (214)
T 3tq6_A 112 LGKPKRPRSAYNVYVAERFQEAKGDSPQ----EKLKTVKENWKNLS 153 (214)
T ss_dssp TTCCCCCCCHHHHHHHHHTTTSSCSSHH----HHHHHHHHHHHTCC
T ss_pred ccCcccccchhhhhHHHHHHhhccCCHH----HHHHHHHHHHHcCC
Confidence 4444678999999999999999998886 89999999999754
No 38
>2yuk_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=92.67 E-value=0.017 Score=43.69 Aligned_cols=41 Identities=17% Similarity=0.178 Sum_probs=33.6
Q ss_pred cCCCCchhhhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccC
Q 027215 138 KRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHF 180 (226)
Q Consensus 138 KRQRvPSaYN~FmK~ei~riK~~nP~i~HkEaFs~aAknWa~~ 180 (226)
+-.|-||||-.|+.++-.+||++||+++ +.|..+|+.|+..
T Consensus 22 aPKRp~sAf~lf~~e~R~kik~enP~~s--~~~~eIse~Wk~l 62 (90)
T 2yuk_A 22 LGEMATVAPVLYTNINFPNLKEEFPDWT--TRVKQIAKLWRKA 62 (90)
T ss_dssp HGGGCSSSHHHHHHHHCTTHHHHCCSHH--HHHHHHHHHHHHS
T ss_pred CCCCCccHHHHHHHHhHHHHHHHCcCcc--chHHHHHHHHHcC
Confidence 3467899999999999999999999985 3355566999864
No 39
>2cto_A Novel protein; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=87.51 E-value=0.23 Score=37.33 Aligned_cols=39 Identities=18% Similarity=0.430 Sum_probs=33.4
Q ss_pred CCCchhhhHHHHHHHHHHHhcCCCCCHHHHHHHH---HHhhccC
Q 027215 140 QRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAA---AKNWAHF 180 (226)
Q Consensus 140 QRvPSaYN~FmK~ei~riK~~nP~i~HkEaFs~a---AknWa~~ 180 (226)
.|-+|||..|+++.-.+||.+ +++-.|.=+.. ...|+..
T Consensus 12 KRP~sAf~lF~~e~R~~ik~e--~~~~~eisK~l~~cGe~Wk~l 53 (93)
T 2cto_A 12 KASRNAYYFFVQEKIPELRRR--GLPVARVADAIPYCSSDWALL 53 (93)
T ss_dssp CSSCCHHHHHHHTTHHHHHHH--TCCCSSHHHHTGGGHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHHHcC
Confidence 467899999999999999998 78888877777 9999873
No 40
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} SCOP: g.41.3.4
Probab=62.48 E-value=4.1 Score=30.56 Aligned_cols=44 Identities=20% Similarity=0.400 Sum_probs=35.4
Q ss_pred eeCCchhhhhcCCCcccceeeecCCCCcceeeeecCCcCCcccccccccCCc
Q 027215 23 VHCTFCDTVLAVPYHFIFSVSVPCTSLFKTVTVRCGHCTNLLSVNMRGLLLP 74 (226)
Q Consensus 23 V~CnFCnTILa~~~~~~~~VsVPcssL~~~VTVRCGHCtnLlSVNmr~ll~p 74 (226)
-.|-|||..=+ |+|=...--.+-++.|+-|.---..++..|-.|
T Consensus 24 F~CPfCnh~~s--------V~vkidk~~~~g~l~C~~Cg~~~~~~i~~L~ep 67 (85)
T 1wii_A 24 FTCPFCNHEKS--------CDVKMDRARNTGVISCTVCLEEFQTPITYLSEP 67 (85)
T ss_dssp CCCTTTCCSSC--------EEEEEETTTTEEEEEESSSCCEEEEECCSSCCT
T ss_pred EcCCCCCCCCe--------EEEEEEccCCEEEEEcccCCCeEEeccCccCcc
Confidence 37999999988 899888888899999999987666666554444
No 41
>2k3r_A Ribonuclease P protein component 4; PFU RPP21, RNAse P, hydrolase, tRNA processing; NMR {Pyrococcus furiosus} PDB: 2ki7_B
Probab=55.48 E-value=7.2 Score=30.49 Aligned_cols=40 Identities=20% Similarity=0.507 Sum_probs=26.5
Q ss_pred eCCchhhhhcCCCcccceeeecCCCCcceeeeecCCcCCcccc
Q 027215 24 HCTFCDTVLAVPYHFIFSVSVPCTSLFKTVTVRCGHCTNLLSV 66 (226)
Q Consensus 24 ~CnFCnTILa~~~~~~~~VsVPcssL~~~VTVRCGHCtnLlSV 66 (226)
-|.-|+++|. | .....|.|=-.+- ..|.++|+.|.+.--.
T Consensus 62 ~Ck~C~s~LI-P-G~t~~vri~~~~k-~~vv~tCl~Cg~~kR~ 101 (123)
T 2k3r_A 62 YCKKCHAFLV-P-GINARVRLRQKRM-PHIVVKCLECGHIMRY 101 (123)
T ss_dssp BCTTTCCBCC-B-TTTEEEEEECSSS-CEEEEEETTTTEEEEE
T ss_pred hccCCCCEeE-C-CCceEEEEecCCc-cEEEEECCCCCCEEEE
Confidence 6999999998 3 2333444433332 4699999999976443
No 42
>1x0t_A Ribonuclease P protein component 4; pyrococcus horikoshii OT3, hydrolase; 1.60A {Pyrococcus horikoshii} PDB: 2zae_B
Probab=51.65 E-value=10 Score=29.38 Aligned_cols=39 Identities=23% Similarity=0.479 Sum_probs=25.3
Q ss_pred eCCchhhhhcCCCcccceeeecCCCCcceeeeecCCcCCccc
Q 027215 24 HCTFCDTVLAVPYHFIFSVSVPCTSLFKTVTVRCGHCTNLLS 65 (226)
Q Consensus 24 ~CnFCnTILa~~~~~~~~VsVPcssL~~~VTVRCGHCtnLlS 65 (226)
-|.-|+|+|. |. ....|.|=-.+. ..|.++|+.|.+.--
T Consensus 67 ~Ck~C~s~Li-PG-~t~~vri~~~~~-~~vv~tCl~Cg~~kR 105 (120)
T 1x0t_A 67 YCKRCHTFLI-PG-VNARVRLRTKRM-PHVVITCLECGYIMR 105 (120)
T ss_dssp BCTTTCCBCC-BT-TTEEEEEECSSS-CEEEEEETTTCCEEE
T ss_pred hccCCCCEeE-CC-CceEEEEecCCc-cEEEEECCCCCCEEE
Confidence 6999999998 32 233343332221 469999999987643
No 43
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=45.75 E-value=15 Score=24.07 Aligned_cols=12 Identities=33% Similarity=0.708 Sum_probs=7.9
Q ss_pred eeeCCchhhhhc
Q 027215 22 YVHCTFCDTVLA 33 (226)
Q Consensus 22 YV~CnFCnTILa 33 (226)
...|..|-..+.
T Consensus 20 ~~~C~IC~~~~~ 31 (73)
T 2ysl_A 20 EVICPICLDILQ 31 (73)
T ss_dssp CCBCTTTCSBCS
T ss_pred CCEeccCCcccC
Confidence 356888866554
No 44
>2k2d_A Ring finger and CHY zinc finger domain- containing protein 1; zinc-binding protein, cytoplasm, metal-binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=43.29 E-value=8.4 Score=28.22 Aligned_cols=33 Identities=18% Similarity=0.530 Sum_probs=24.8
Q ss_pred CceeeeeCCchhhhhcCCCcccceeeecCCCCcceeeeecCCcCCcc
Q 027215 18 EQLCYVHCTFCDTVLAVPYHFIFSVSVPCTSLFKTVTVRCGHCTNLL 64 (226)
Q Consensus 18 EqlCYV~CnFCnTILa~~~~~~~~VsVPcssL~~~VTVRCGHCtnLl 64 (226)
++-.-+.||-|+..--++||++ ..+|++|.+.-
T Consensus 33 ~~~v~I~CnDC~~~s~v~~h~l--------------g~kC~~C~SyN 65 (79)
T 2k2d_A 33 NMTVDILCNDCNGRSTVQFHIL--------------GMKCKICESYN 65 (79)
T ss_dssp CCEEEEEESSSCCEEEEECCTT--------------CCCCTTTSCCC
T ss_pred CCEeEEECCCCCCCccCCceee--------------cccCcCCCCcC
Confidence 4556789999998888777764 34799997653
No 45
>3uky_C Nuclear CAP-binding protein complex subunit 1; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding; 2.35A {Saccharomyces cerevisiae}
Probab=35.57 E-value=9.8 Score=24.37 Aligned_cols=7 Identities=71% Similarity=1.213 Sum_probs=5.9
Q ss_pred ccCCCCc
Q 027215 137 EKRQRVP 143 (226)
Q Consensus 137 EKRQRvP 143 (226)
-||||+|
T Consensus 26 pKRQR~P 32 (32)
T 3uky_C 26 PKRQRIP 32 (32)
T ss_pred cccccCC
Confidence 4899998
No 46
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=35.20 E-value=27 Score=22.42 Aligned_cols=11 Identities=36% Similarity=0.854 Sum_probs=7.1
Q ss_pred eeCCchhhhhc
Q 027215 23 VHCTFCDTVLA 33 (226)
Q Consensus 23 V~CnFCnTILa 33 (226)
..|..|..++.
T Consensus 21 ~~C~IC~~~~~ 31 (63)
T 2ysj_A 21 VICPICLDILQ 31 (63)
T ss_dssp CBCTTTCSBCS
T ss_pred CCCCcCCchhC
Confidence 45888865544
No 47
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=33.60 E-value=8.3 Score=34.42 Aligned_cols=28 Identities=29% Similarity=0.872 Sum_probs=21.4
Q ss_pred CceeeeeCCchhhhhcCCCcccceeeecCCCCcceeeeecCCcCCc
Q 027215 18 EQLCYVHCTFCDTVLAVPYHFIFSVSVPCTSLFKTVTVRCGHCTNL 63 (226)
Q Consensus 18 EqlCYV~CnFCnTILa~~~~~~~~VsVPcssL~~~VTVRCGHCtnL 63 (226)
|..=|.||++|.|- ...|-++|.+|.|-
T Consensus 204 ~G~R~l~Cs~C~t~------------------W~~~R~~C~~Cg~~ 231 (309)
T 2fiy_A 204 TGLRYLSCSLCACE------------------WHYVRIKCSHCEES 231 (309)
T ss_dssp CCEEEEEETTTCCE------------------EECCTTSCSSSCCC
T ss_pred CCcEEEEeCCCCCE------------------EeecCcCCcCCCCC
Confidence 45558999999774 34677899999985
No 48
>2e2z_A TIM15; protein import, zinc finger, protein transport, chaperone regulator; NMR {Saccharomyces cerevisiae}
Probab=24.56 E-value=28 Score=27.13 Aligned_cols=13 Identities=38% Similarity=0.756 Sum_probs=11.5
Q ss_pred ceeeeecCCcCCc
Q 027215 51 KTVTVRCGHCTNL 63 (226)
Q Consensus 51 ~~VTVRCGHCtnL 63 (226)
-+|-|||..|.|.
T Consensus 35 GvViv~C~gC~n~ 47 (100)
T 2e2z_A 35 GTVLISCPHCKVR 47 (100)
T ss_dssp SEEEEECTTTCCE
T ss_pred CEEEEEcCCCccc
Confidence 4799999999985
No 49
>2d74_B Translation initiation factor 2 beta subunit; protein complex; 2.80A {Pyrococcus furiosus} PDB: 2dcu_B*
Probab=24.07 E-value=22 Score=28.91 Aligned_cols=36 Identities=22% Similarity=0.425 Sum_probs=27.2
Q ss_pred eeeeCCch---hhhhcCCCcccceeeecCCCCcceeeeecCCcCCcccccccc
Q 027215 21 CYVHCTFC---DTVLAVPYHFIFSVSVPCTSLFKTVTVRCGHCTNLLSVNMRG 70 (226)
Q Consensus 21 CYV~CnFC---nTILa~~~~~~~~VsVPcssL~~~VTVRCGHCtnLlSVNmr~ 70 (226)
-||.|.-| +|.|. + -+ .+...+|.-|..-.+|.++.
T Consensus 103 ~yVlC~~C~sPdT~L~--------k---~~---r~~~l~C~ACGa~~~V~~~k 141 (148)
T 2d74_B 103 EYVICPVCGSPDTKII--------K---RD---RFHFLKCEACGAETPIQHLL 141 (148)
T ss_dssp HHSSCSSSCCTTCCCC--------B---SS---SSBCCCCSSSCCCCCCCC--
T ss_pred HEEECCCCCCcCcEEE--------E---eC---CEEEEEecCCCCCccccchh
Confidence 48999999 57776 3 12 56778999999999998875
No 50
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=22.97 E-value=29 Score=23.96 Aligned_cols=21 Identities=33% Similarity=0.599 Sum_probs=17.5
Q ss_pred hhhhHHHHHHHHHHHhcCCCC
Q 027215 144 SAYNRFIKDEIQRIKAGNPDI 164 (226)
Q Consensus 144 SaYN~FmK~ei~riK~~nP~i 164 (226)
||-|.|++..|+|+|..|-.+
T Consensus 2 sarnaylrkkiarlkkdnlql 22 (52)
T 3he5_B 2 SARNAYLRKKIARLKKDNLQL 22 (52)
T ss_dssp CSHHHHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHhhhhhhh
Confidence 678999999999999877543
Done!