BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>027216
MGAEAKATHLMMSKVFSTCNLPISISKSKSFKLVPHHNSKIYAASFKKNIDSSQPQIVKK
SSKIPRPLITVSPSDGRWHGNWNSEYVVSLKQLRLADLIEDDDHLHQHKNKDAQVSINLS
IQKHASFGFSVDGRIITSFSRKCSYCSSPYCKKIDTTFNVWVLLSSRENRNVQLPDIGGD
PSVIYVKPGYQADLDSLVQDTIRLTTAVKVLNIKSLLSAVTFILFF

High Scoring Gene Products

Symbol, full name Information P value
AT3G19800 protein from Arabidopsis thaliana 8.1e-44

Back to top

Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  027216
        (226 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2092256 - symbol:AT3G19800 "AT3G19800" species...   462  8.1e-44   1


>TAIR|locus:2092256 [details] [associations]
            symbol:AT3G19800 "AT3G19800" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
            "nucleus" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] EMBL:CP002686 GenomeReviews:BA000014_GR
            InterPro:IPR003772 Pfam:PF02620 EMBL:AF360150 EMBL:AY056306
            EMBL:AY088088 IPI:IPI00520022 RefSeq:NP_566648.1 UniGene:At.19008
            UniGene:At.66494 STRING:Q9C5M1 PRIDE:Q9C5M1
            EnsemblPlants:AT3G19800.1 GeneID:821517 KEGG:ath:AT3G19800
            TAIR:At3g19800 HOGENOM:HOG000240921 InParanoid:Q9C5M1 OMA:RIMTSIA
            PhylomeDB:Q9C5M1 ProtClustDB:CLSN2688575 ArrayExpress:Q9C5M1
            Genevestigator:Q9C5M1 Uniprot:Q9C5M1
        Length = 229

 Score = 462 (167.7 bits), Expect = 8.1e-44, P = 8.1e-44
 Identities = 92/150 (61%), Positives = 118/150 (78%)

Query:    61 SSKIPRPLITVSPSDGRWHGNWNSEYVVSLKQLRLADLIEDDDHLHQHKNKDAQVSINLS 120
             SSK  + LIT+SPS+G+W+GNW ++Y VSL+ L+L DL+ED          +++VS++LS
Sbjct:    49 SSKTVKRLITLSPSEGKWNGNWKTQYDVSLRDLQLQDLVEDGP-------PNSRVSVDLS 101

Query:   121 IQKHASFGFSVDGRIITSFSRKCSYCSSPYCKKIDTTFNVWVLLSSRENRNVQLPDIGGD 180
             +Q+HAS G SVDGRI+TS +RKCS CSS Y + IDT+F VW+L SSRENR   LP+IGGD
Sbjct:   102 VQRHASMGLSVDGRIMTSIARKCSICSSLYPRLIDTSFTVWILPSSRENRASTLPEIGGD 161

Query:   181 -PSVIYVKPGYQADLDSLVQDTIRLTTAVK 209
              PSVIYV+PGY+A+LDSLVQDTIRLTT  K
Sbjct:   162 DPSVIYVRPGYEANLDSLVQDTIRLTTYAK 191


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.132   0.387    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      226       226   0.00078  113 3  11 22  0.39    33
                                                     32  0.41    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  600 (64 KB)
  Total size of DFA:  183 KB (2106 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  19.93u 0.09s 20.02t   Elapsed:  00:00:01
  Total cpu time:  19.93u 0.09s 20.02t   Elapsed:  00:00:01
  Start:  Fri May 10 05:03:16 2013   End:  Fri May 10 05:03:17 2013

Back to top