BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 027216
         (226 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3K5K|A Chain A, Discovery Of A 2,4-Diamino-7-Aminoalkoxy-Quinazoline As A
           Potent Inhibitor Of Histone Lysine Methyltransferase,
           G9a
 pdb|3K5K|B Chain B, Discovery Of A 2,4-Diamino-7-Aminoalkoxy-Quinazoline As A
           Potent Inhibitor Of Histone Lysine Methyltransferase,
           G9a
 pdb|3RJW|A Chain A, Crystal Structure Of Histone Lysine Methyltransferase G9a
           With An Inhibitor
 pdb|3RJW|B Chain B, Crystal Structure Of Histone Lysine Methyltransferase G9a
           With An Inhibitor
          Length = 283

 Score = 28.1 bits (61), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 19/63 (30%), Positives = 26/63 (41%), Gaps = 13/63 (20%)

Query: 79  HGNWNSEYVVSLKQLRLADLIEDDDHLHQHKNKDAQVSINLSIQKHASFGFSVDGRIITS 138
            G +  EYV  L     AD+ EDD +L    NKD +V             + +D R   +
Sbjct: 150 QGTFICEYVGELISDAEADVREDDSYLFDLDNKDGEV-------------YCIDARYYGN 196

Query: 139 FSR 141
            SR
Sbjct: 197 ISR 199


>pdb|2O8J|A Chain A, Human Euchromatic Histone Methyltransferase 2
 pdb|2O8J|B Chain B, Human Euchromatic Histone Methyltransferase 2
 pdb|2O8J|C Chain C, Human Euchromatic Histone Methyltransferase 2
 pdb|2O8J|D Chain D, Human Euchromatic Histone Methyltransferase 2
          Length = 281

 Score = 28.1 bits (61), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 19/63 (30%), Positives = 26/63 (41%), Gaps = 13/63 (20%)

Query: 79  HGNWNSEYVVSLKQLRLADLIEDDDHLHQHKNKDAQVSINLSIQKHASFGFSVDGRIITS 138
            G +  EYV  L     AD+ EDD +L    NKD +V             + +D R   +
Sbjct: 148 QGTFICEYVGELISDAEADVREDDSYLFDLDNKDGEV-------------YCIDARYYGN 194

Query: 139 FSR 141
            SR
Sbjct: 195 ISR 197


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.132    0.387 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,366,821
Number of Sequences: 62578
Number of extensions: 242154
Number of successful extensions: 622
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 620
Number of HSP's gapped (non-prelim): 14
length of query: 226
length of database: 14,973,337
effective HSP length: 95
effective length of query: 131
effective length of database: 9,028,427
effective search space: 1182723937
effective search space used: 1182723937
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)