Query 027216
Match_columns 226
No_of_seqs 80 out of 82
Neff 3.9
Searched_HMMs 46136
Date Fri Mar 29 06:41:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027216.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027216hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11193 hypothetical protein; 99.8 7E-19 1.5E-23 147.0 9.6 101 112-217 42-143 (172)
2 PF02620 DUF177: Uncharacteriz 99.8 5E-19 1.1E-23 136.2 8.0 86 131-219 1-86 (119)
3 COG1399 Predicted metal-bindin 99.6 1.1E-15 2.4E-20 129.9 10.0 87 128-219 57-143 (176)
4 PF01267 F-actin_cap_A: F-acti 41.5 27 0.00058 32.0 3.1 46 77-145 158-203 (271)
5 COG5375 Uncharacterized protei 27.1 1.6E+02 0.0034 26.9 5.5 66 68-141 147-213 (216)
6 PF12151 MVL: Mannan-binding p 26.8 15 0.00032 24.6 -0.7 15 74-88 15-29 (37)
7 PF15594 Imm30: Immunity prote 19.6 2.6E+02 0.0057 22.1 5.0 59 75-143 50-111 (124)
8 PF13243 Prenyltrans_1: Prenyl 19.1 37 0.00081 25.1 0.0 27 63-89 3-29 (109)
9 PF07353 Uroplakin_II: Uroplak 18.2 1.7E+02 0.0036 26.0 3.8 60 19-89 48-107 (184)
10 KOG0836 F-actin capping protei 16.9 67 0.0014 30.2 1.1 16 77-92 165-180 (282)
No 1
>PRK11193 hypothetical protein; Provisional
Probab=99.78 E-value=7e-19 Score=146.97 Aligned_cols=101 Identities=17% Similarity=0.279 Sum_probs=81.3
Q ss_pred CcceEEEEEEEEecCCeEEEEEEEEEEEeeecccccccccccccccEEEEEEecccccccCCCCCCCCCCeeEEecCCce
Q 027216 112 DAQVSINLSIQKHASFGFSVDGRIITSFSRKCSYCSSPYCKKIDTTFNVWVLLSSRENRNVQLPDIGGDPSVIYVKPGYQ 191 (226)
Q Consensus 112 ~aPV~V~l~V~k~~g~~l~VdG~I~tsv~~~CsRCLkpF~~~Id~~F~e~~v~s~~ed~~~~e~ELgdDd~iiy~~eGDe 191 (226)
.+||+|++.+.+.+++++.|+|++++.+.+.|+|||+||.++++.+|...++.+..+. .++.++...++.++|++
T Consensus 42 ~~~v~v~~~~~~~~~~~~~v~g~v~~~v~l~C~RCL~~~~~~l~~~~~~~~~~~e~~~-----~~~~~~~e~~~~~~~~~ 116 (172)
T PRK11193 42 DSDVEVSLSFGIDNQRLVVLKGKAVVEVTLECQRCNEPFTHQVEVEFCFSPVRNDEQA-----EELPEAYEPIEVNEFGE 116 (172)
T ss_pred CCceEEEEEEEEcCCCeEEEEEEEEEEEEEECCCCCccCceEEEEEEEEEEecChhhh-----hhCcccccceeeCCcCc
Confidence 4789999999999446899999999999999999999999999999998886432111 11122211222368899
Q ss_pred eeCcHHHHHHhhhhCCccccCccC-Cc
Q 027216 192 ADLDSLVQDTIRLTTAVKVLNIKS-LL 217 (226)
Q Consensus 192 IDLdelI~EqIiLalPmK~LCsED-CK 217 (226)
|||+++|+|+|+|++|++++|+++ |.
T Consensus 117 iDl~~lv~dellLaLP~~plc~~~~C~ 143 (172)
T PRK11193 117 VDLLQLVEDELILALPIVPMHDSEHCE 143 (172)
T ss_pred ccHHHHHHHHHHHcCCCcCcCCcccCC
Confidence 999999999999999999999975 74
No 2
>PF02620 DUF177: Uncharacterized ACR, COG1399; InterPro: IPR003772 This entry describes proteins of unknown function.
Probab=99.78 E-value=5e-19 Score=136.25 Aligned_cols=86 Identities=22% Similarity=0.346 Sum_probs=70.4
Q ss_pred EEEEEEEEEeeecccccccccccccccEEEEEEecccccccCCCCCCCCCCeeEEecCCceeeCcHHHHHHhhhhCCccc
Q 027216 131 VDGRIITSFSRKCSYCSSPYCKKIDTTFNVWVLLSSRENRNVQLPDIGGDPSVIYVKPGYQADLDSLVQDTIRLTTAVKV 210 (226)
Q Consensus 131 VdG~I~tsv~~~CsRCLkpF~~~Id~~F~e~~v~s~~ed~~~~e~ELgdDd~iiy~~eGDeIDLdelI~EqIiLalPmK~ 210 (226)
|+|+|++++...|+|||+||.++++.+|++.|........ ..++.+++..++.+.+++|||.++|+|+|+|++||++
T Consensus 1 v~g~i~~~v~~~C~RCL~~~~~~i~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~iDl~~~i~e~ilL~iP~~~ 77 (119)
T PF02620_consen 1 VDGRIEGTVTLPCDRCLEPFDYPIDEDFEEVFVPEEEEEE---DEELDEEDEEVIPVEDDEIDLAELIEEEILLAIPMKP 77 (119)
T ss_pred CEEEEEEEEEEEEcccCcccCceEEEEEEEEEEcCCcccc---cccCCCCCceEEecCCCEEeHHHHHHHHHHHcCCCcc
Confidence 6899999999999999999999999999999987633321 1111213344444799999999999999999999999
Q ss_pred cCccCCccc
Q 027216 211 LNIKSLLSA 219 (226)
Q Consensus 211 LCsEDCKG~ 219 (226)
+|+++|+|.
T Consensus 78 ~c~~~C~~~ 86 (119)
T PF02620_consen 78 LCSEDCKGE 86 (119)
T ss_pred cCcccCccc
Confidence 999999993
No 3
>COG1399 Predicted metal-binding, possibly nucleic acid-binding protein [General function prediction only]
Probab=99.64 E-value=1.1e-15 Score=129.87 Aligned_cols=87 Identities=18% Similarity=0.175 Sum_probs=71.8
Q ss_pred eEEEEEEEEEEEeeecccccccccccccccEEEEEEecccccccCCCCCCCCCCeeEEecCCceeeCcHHHHHHhhhhCC
Q 027216 128 GFSVDGRIITSFSRKCSYCSSPYCKKIDTTFNVWVLLSSRENRNVQLPDIGGDPSVIYVKPGYQADLDSLVQDTIRLTTA 207 (226)
Q Consensus 128 ~l~VdG~I~tsv~~~CsRCLkpF~~~Id~~F~e~~v~s~~ed~~~~e~ELgdDd~iiy~~eGDeIDLdelI~EqIiLalP 207 (226)
++.++|++.+.+.+.|+|||++|.++++..+++.|+.... +. ++ +..+|+.+.+ +++++|||.+.|.|+|+|++|
T Consensus 57 ~~~~~~~~~~~~~l~C~Rcl~~~~~~~~~~~~~~f~~~~~--~~-~~-~~~~dd~v~v-~~~~~iDL~~~VeDeilLalP 131 (176)
T COG1399 57 LVVLDGQVSAEVTLECQRCLEPVEYPLDVTVTELFVRPDE--QA-DE-EPLEDDEVEV-IEDGEIDLLESVEDEILLALP 131 (176)
T ss_pred eEEEEEEEEEEEEEcccccCCcceeeEEEEEEEEeecCcc--cc-cc-ccCCCceeee-ccCCcccHHHHHHHHHHHhCC
Confidence 5999999999999999999999999999999999987632 11 11 1222334443 667799999999999999999
Q ss_pred ccccCccCCccc
Q 027216 208 VKVLNIKSLLSA 219 (226)
Q Consensus 208 mK~LCsEDCKG~ 219 (226)
|+++|.++|+|.
T Consensus 132 ~~~l~~~~~~g~ 143 (176)
T COG1399 132 LVPLCEPECCGL 143 (176)
T ss_pred CccccCcccccc
Confidence 999999999994
No 4
>PF01267 F-actin_cap_A: F-actin capping protein alpha subunit; InterPro: IPR002189 This entry represents a component of the WASH complex. The WASH complex is present at the surface of endosomes and recruits and activates the Arp2/3 complex to induce actin polymerisation. The WASH complex plays a key role in the fission of tubules that serve as transport intermediates during endosome sorting []. The WASH complex's subunit structure: F-actin-capping protein subunit alpha (CAPZA1, CAPZA2 or CAPZA3), F-actin-capping protein subunit beta (CAPZB), WASH (WASH1, WASH2P, WASH3P, WASH4P, WASH5P or WASH6P), FAM21 (FAM21A, FAM21B or FAM21C), KIAA1033, KIAA0196 (strumpellin) and CCDC53. The actin filament system, a prominent part of the cytoskeleton in eukaryotic cells, is both a static structure and a dynamic network that can undergo rearrangements: it is thought to be involved in processes such as cell movement and phagocytosis [], as well as muscle contraction. The F-actin capping protein binds in a calcium-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike gelsolin and severin this protein does not sever actin filaments. The F-actin capping protein is a heterodimer composed of two unrelated subunits: alpha and beta (see IPR001698 from INTERPRO). Neither of the subunits shows sequence similarity to other filament-capping proteins []. The alpha subunit is a protein of about 268 to 286 amino acid residues whose sequence is well conserved in eukaryotic species [].; GO: 0003779 actin binding, 0030036 actin cytoskeleton organization, 0008290 F-actin capping protein complex; PDB: 1MQ1_D 1MWN_X 2KBM_Y 2KZ7_A 3AAE_C 3AA6_A 3LK4_G 1IZN_A 3AA7_A 3AAA_A ....
Probab=41.53 E-value=27 Score=31.99 Aligned_cols=46 Identities=24% Similarity=0.499 Sum_probs=28.6
Q ss_pred ccCCccceeeeeeeccccccccccCCcccccCCCCCcceEEEEEEEEecCCeEEEEEEEEEEEeeeccc
Q 027216 77 RWHGNWNSEYVVSLKQLRLADLIEDDDHLHQHKNKDAQVSINLSIQKHASFGFSVDGRIITSFSRKCSY 145 (226)
Q Consensus 77 ~~~~~w~~~~~~sl~~L~l~dl~~d~~~~~~~~~k~aPV~V~l~V~k~~g~~l~VdG~I~tsv~~~CsR 145 (226)
=|+|.|.|+|.+++ ... ..+.|+|.-. -||+=+|.|+-.....+.-
T Consensus 158 fwnG~WrS~w~~~~----------~~~-----------~~l~G~I~V~--vHYyEdGNVqL~~~k~~~~ 203 (271)
T PF01267_consen 158 FWNGRWRSEWTVDF----------SSS-----------GTLSGKIKVQ--VHYYEDGNVQLNSSKEVSE 203 (271)
T ss_dssp TEEEEEEEEEEEEE----------ETT-----------EEEEEEEEEE--EEE-TTEEEEEEEEEEEEE
T ss_pred ccCceeeEEEEEec----------CCC-----------ceEEEEEEee--EEEEeecEEEEEEccccce
Confidence 49999999999987 111 1566666443 2666677776655554443
No 5
>COG5375 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.09 E-value=1.6e+02 Score=26.87 Aligned_cols=66 Identities=12% Similarity=0.277 Sum_probs=53.2
Q ss_pred eEEEcCCCCccCCccceeeeeeeccccccccccCCcccccCCCCCcceEEE-EEEEEecCCeEEEEEEEEEEEee
Q 027216 68 LITVSPSDGRWHGNWNSEYVVSLKQLRLADLIEDDDHLHQHKNKDAQVSIN-LSIQKHASFGFSVDGRIITSFSR 141 (226)
Q Consensus 68 li~~~~~~g~~~~~w~~~~~~sl~~L~l~dl~~d~~~~~~~~~k~aPV~V~-l~V~k~~g~~l~VdG~I~tsv~~ 141 (226)
=++|.+.+|- +.+++..+.||+-.+++.|++. -+.+|.+.+.-+ +.|.-. |+.+..+|.|++.++.
T Consensus 147 dv~i~~~eGi-----~a~~~sA~vDl~~G~~sg~~pv--~i~~~~gsI~ads~~v~D~-G~iivF~g~Vr~~id~ 213 (216)
T COG5375 147 DVKITTDEGI-----RADFQSAFVDLRTGNMSGDSPV--DISGKGGSITADSYSVTDK-GKIIVFEGNVRTRIDP 213 (216)
T ss_pred CeEEecchhh-----hcccchheeeecccccccCCce--eecCCCCcEEeeeeEeecC-CcEEEEecceEEEecC
Confidence 4788888886 5667778889999999999998 567777776654 566666 9999999999998864
No 6
>PF12151 MVL: Mannan-binding protein; InterPro: IPR021992 This domain family is found in bacteria, and is approximately 40 amino acids in length, There is a single completely conserved residue G that may be functionally important. The domain occurs in two types of proteins. In mannan binding proteins [], it forms a homodimeric molecule which complexes into a homo-octamer. In thiamidases it occurs without repeats but in the presence of other domains. MVL is distinct amongst other oligomannoside binding proteins in that it exhibits specificity for certain tetrasaccharides. Each molecule of MVL has four distinct carbohydrate binding sites. ; PDB: 1ZHQ_D 1ZHS_E.
Probab=26.83 E-value=15 Score=24.57 Aligned_cols=15 Identities=33% Similarity=0.900 Sum_probs=10.1
Q ss_pred CCCccCCccceeeee
Q 027216 74 SDGRWHGNWNSEYVV 88 (226)
Q Consensus 74 ~~g~~~~~w~~~~~~ 88 (226)
..|.|+|||..-.+.
T Consensus 15 ~gg~W~Gqw~~t~~~ 29 (37)
T PF12151_consen 15 LGGEWNGQWCTTVVG 29 (37)
T ss_dssp TTSEEEEEEEEEETT
T ss_pred hCCcccceeEEeccC
Confidence 346689998776543
No 7
>PF15594 Imm30: Immunity protein 30
Probab=19.60 E-value=2.6e+02 Score=22.09 Aligned_cols=59 Identities=25% Similarity=0.415 Sum_probs=35.1
Q ss_pred CCcc-CCccceeeeeeeccccccccccCCcccccCCCCCc-ceEEEEEEEEecCCeEEEEEEEEEEE-eeec
Q 027216 75 DGRW-HGNWNSEYVVSLKQLRLADLIEDDDHLHQHKNKDA-QVSINLSIQKHASFGFSVDGRIITSF-SRKC 143 (226)
Q Consensus 75 ~g~~-~~~w~~~~~~sl~~L~l~dl~~d~~~~~~~~~k~a-PV~V~l~V~k~~g~~l~VdG~I~tsv-~~~C 143 (226)
-.|| .+.||+ +.++|.=++..+|.=++ +.. .+-.++.++.. .++..|+-.....+ .+.|
T Consensus 50 P~kW~~~~~n~-~~v~l~F~~V~~l~i~g--------~~~~n~i~~~~i~~~-~~~~~v~i~~~~~~~~l~C 111 (124)
T PF15594_consen 50 PKKWSPNKFNA-VYVTLSFFDVSDLEISG--------WGTQNIIDDLEISRD-DDGISVDIKCNNGFSSLSC 111 (124)
T ss_pred CceeccCCCeE-EEEEEEEEEeeEEEEEe--------cccCcEEEeEEEEEC-CCCcEEEEEecCCeEEEEe
Confidence 3578 666776 55566555555554322 122 24566777777 66666666666666 7888
No 8
>PF13243 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 3SAE_A 3SDV_A 3SDT_A 3SDQ_A 3SDU_A.
Probab=19.13 E-value=37 Score=25.09 Aligned_cols=27 Identities=30% Similarity=0.633 Sum_probs=0.0
Q ss_pred CCCCceEEEcCCCCccCCccceeeeee
Q 027216 63 KIPRPLITVSPSDGRWHGNWNSEYVVS 89 (226)
Q Consensus 63 ~~~~~li~~~~~~g~~~~~w~~~~~~s 89 (226)
|+..-|+..-..||.|.+.|..+..+|
T Consensus 3 ~~~~~l~~~Q~~dG~W~~~~~~~~~~t 29 (109)
T PF13243_consen 3 RAAEWLLSQQNPDGSWGYNWGSDVFVT 29 (109)
T ss_dssp ---------------------------
T ss_pred ccccccccccccccccccccccccccc
Confidence 455667777789999999988654444
No 9
>PF07353 Uroplakin_II: Uroplakin II; InterPro: IPR009952 This family contains uroplakin II, which is approximately 180 residues long and seems to be restricted to mammals. Uroplakin II is an integral membrane protein, and is one of the components of the apical plaques of mammalian urothelium formed by the asymmetric unit membrane - this is believed to play a role in strengthening the urothelial apical surface to prevent the cells from rupturing during bladder distension [].; GO: 0016044 cellular membrane organization, 0030176 integral to endoplasmic reticulum membrane
Probab=18.23 E-value=1.7e+02 Score=25.96 Aligned_cols=60 Identities=20% Similarity=0.196 Sum_probs=45.9
Q ss_pred CCCceeeeccccccccCCCCcceeeecccccCCCCCCcccccCCCCCCceEEEcCCCCccCCccceeeeee
Q 027216 19 CNLPISISKSKSFKLVPHHNSKIYAASFKKNIDSSQPQIVKKSSKIPRPLITVSPSDGRWHGNWNSEYVVS 89 (226)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~~w~~~~~~s 89 (226)
.-|||-+...+++..--.|.++...+++.- -| -|--|-||+|-.+.+++.-.-.+.|+++
T Consensus 48 lppchltgg~atl~vrr~n~s~~~~~~f~v-----pp------cr~rrelvsvv~sg~~fT~trlsaYqVt 107 (184)
T PF07353_consen 48 LPPCHLTGGNATLMVRRANDSKVVKSSFVV-----PP------CRGRRELVSVVDSGAGFTVTRLSAYQVT 107 (184)
T ss_pred CCCceecCCceEEEEeecCccceeeeeeEe-----cC------cccceeeEEEeecCCceeeccceeEEee
Confidence 458998888888776666777777777765 22 3667889999999988877777778765
No 10
>KOG0836 consensus F-actin capping protein, alpha subunit [Cytoskeleton]
Probab=16.89 E-value=67 Score=30.22 Aligned_cols=16 Identities=31% Similarity=0.912 Sum_probs=13.4
Q ss_pred ccCCccceeeeeeecc
Q 027216 77 RWHGNWNSEYVVSLKQ 92 (226)
Q Consensus 77 ~~~~~w~~~~~~sl~~ 92 (226)
=|+|.|-|++-.++.+
T Consensus 165 fwNG~WRS~w~~~v~~ 180 (282)
T KOG0836|consen 165 FWNGRWRSEWNYDVQP 180 (282)
T ss_pred ccCCceeeeeeeccCc
Confidence 5899999999888776
Done!