BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027217
(226 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9CR50|ZN363_MOUSE RING finger and CHY zinc finger domain-containing protein 1 OS=Mus
musculus GN=Rchy1 PE=1 SV=1
Length = 261
Score = 172 bits (435), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 88/210 (41%), Positives = 127/210 (60%), Gaps = 14/210 (6%)
Query: 17 GCKHYRRRCRIRAPCCNEIFDCRHCHNEAASMLRNPYDRHELVRQDVKQVICSVCDTEQP 76
GC+HY R C ++APCC++++ CR CH+ + H+L R VK+V C C+ Q
Sbjct: 19 GCEHYDRACLLKAPCCDKLYTCRLCHDTN--------EDHQLDRFKVKEVQCINCEKLQH 70
Query: 77 VAQVCTNCGVNMGEYFCDICKFYDDDIEKGQFHCDDCGICRIGGRENYFHCKRCGSCYST 136
Q C +C GEY+C IC +D D K Q+HC+ CGICRIG +E++FHC +C C +T
Sbjct: 71 AQQTCEDCSTLFGEYYCSICHLFDKD--KRQYHCESCGICRIGPKEDFFHCLKCNLCLTT 128
Query: 137 SLRNNHLCIENSMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICS 196
+LR H CIEN +CPIC E + S V+ CGH +H CY EM+K + Y CP+C
Sbjct: 129 NLRGKHKCIENVSRQNCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLK-EGYRCPLCM 187
Query: 197 KSVIDMSRTWKRIDEELQMNSSIFFPSFFR 226
S +DM+R W+++D E+ + PS ++
Sbjct: 188 HSALDMTRYWRQLDTEV---AQTPMPSEYQ 214
>sp|Q96PM5|ZN363_HUMAN RING finger and CHY zinc finger domain-containing protein 1 OS=Homo
sapiens GN=RCHY1 PE=1 SV=1
Length = 261
Score = 171 bits (433), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 91/228 (39%), Positives = 134/228 (58%), Gaps = 16/228 (7%)
Query: 1 MEGSANERITFG--KMGYGCKHYRRRCRIRAPCCNEIFDCRHCHNEAASMLRNPYDRHEL 58
M +A E G + GC+HY R C ++APCC++++ CR CH+ + H+L
Sbjct: 1 MAATAREDGASGQERGQRGCEHYDRGCLLKAPCCDKLYTCRLCHDNN--------EDHQL 52
Query: 59 VRQDVKQVICSVCDTEQPVAQVCTNCGVNMGEYFCDICKFYDDDIEKGQFHCDDCGICRI 118
R VK+V C C+ Q Q C C GEY+CDIC +D D K Q+HC++CGICRI
Sbjct: 53 DRFKVKEVQCINCEKIQHAQQTCEECSTLFGEYYCDICHLFDKD--KKQYHCENCGICRI 110
Query: 119 GGRENYFHCKRCGSCYSTSLRNNHLCIENSMHHHCPICYEYLFDSLRNTTVMKCGHTMHC 178
G +E++FHC +C C + +L+ H CIEN +CPIC E + S V+ CGH +H
Sbjct: 111 GPKEDFFHCLKCNLCLAMNLQGRHKCIENVSRQNCPICLEDIHTSRVVAHVLPCGHLLHR 170
Query: 179 ECYHEMIKRDKYCCPICSKSVIDMSRTWKRIDEELQMNSSIFFPSFFR 226
CY EM+K + Y CP+C S +DM+R W+++D+E+ + PS ++
Sbjct: 171 TCYEEMLK-EGYRCPLCMHSALDMTRYWRQLDDEV---AQTPMPSEYQ 214
>sp|O14099|YERG_SCHPO Uncharacterized RING finger protein C2F3.16 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPAC2F3.16 PE=4 SV=1
Length = 425
Score = 164 bits (416), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 86/200 (43%), Positives = 119/200 (59%), Gaps = 11/200 (5%)
Query: 17 GCKHYRRRCRIRAPCCNEIFDCRHCHNEAASMLRNPYDRHELVRQDVKQVICSVCDTEQP 76
GC HY R C+++ C+E + CRHCHN+A H L R V+ ++C +C QP
Sbjct: 141 GCSHYMRNCKVQCFDCHEWYTCRHCHNDACD--------HVLERPAVENMLCMICSKVQP 192
Query: 77 VAQVCTNCGVNMGEYFCDICKFYDDDIEKGQFHCDDCGICRIGG--RENYFHCKRCGSCY 134
AQ C C MG Y+C+ CK +DDD K +HCDDCGICRIG ++YFHCK CG C
Sbjct: 193 AAQYCKYCKNCMGRYYCNKCKLWDDDPNKSSYHCDDCGICRIGRGLGDDYFHCKTCGLCL 252
Query: 135 STSLRNNHLCIENSMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPI 194
S+ N H CIE S +CPIC EY+F+S + C H +H C+ E I R Y CP
Sbjct: 253 PISVFNTHRCIERSTDCNCPICGEYMFNSRERVIFLSCSHPLHQRCHEEYI-RTNYRCPT 311
Query: 195 CSKSVIDMSRTWKRIDEELQ 214
C K++I+++ ++ +D E++
Sbjct: 312 CYKTIINVNSLFRILDMEIE 331
>sp|Q2TL32|UBR4_RAT E3 ubiquitin-protein ligase UBR4 OS=Rattus norvegicus GN=Ubr4 PE=2
SV=2
Length = 5194
Score = 40.8 bits (94), Expect = 0.007, Method: Composition-based stats.
Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 4/87 (4%)
Query: 45 AASMLRNPYDRHELVRQDVKQVICSVCDTEQPV-AQVCTNCGVNMGEYFCDICKFYDDDI 103
A++++ D +E + + + C C P VC NCG N+ Y C C+ + D
Sbjct: 3648 ASNLMIEFADFYENYQASTETLQCPRCSASVPANPGVCGNCGENV--YQCHKCRSINYD- 3704
Query: 104 EKGQFHCDDCGICRIGGRENYFHCKRC 130
EK F C+ CG C+ + + K C
Sbjct: 3705 EKDPFLCNACGFCKYARFDFMLYAKPC 3731
>sp|A2AN08|UBR4_MOUSE E3 ubiquitin-protein ligase UBR4 OS=Mus musculus GN=Ubr4 PE=1 SV=1
Length = 5180
Score = 40.8 bits (94), Expect = 0.007, Method: Composition-based stats.
Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 4/87 (4%)
Query: 45 AASMLRNPYDRHELVRQDVKQVICSVCDTEQPV-AQVCTNCGVNMGEYFCDICKFYDDDI 103
A++++ D +E + + + C C P VC NCG N+ Y C C+ + D
Sbjct: 3634 ASNLMIEFADFYENYQASTETLQCPRCSASVPANPGVCGNCGENV--YQCHKCRSINYD- 3690
Query: 104 EKGQFHCDDCGICRIGGRENYFHCKRC 130
EK F C+ CG C+ + + K C
Sbjct: 3691 EKDPFLCNACGFCKYARFDFMLYAKPC 3717
>sp|Q5T4S7|UBR4_HUMAN E3 ubiquitin-protein ligase UBR4 OS=Homo sapiens GN=UBR4 PE=1 SV=1
Length = 5183
Score = 40.8 bits (94), Expect = 0.007, Method: Composition-based stats.
Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 4/87 (4%)
Query: 45 AASMLRNPYDRHELVRQDVKQVICSVCDTEQPV-AQVCTNCGVNMGEYFCDICKFYDDDI 103
A++++ D +E + + + C C P VC NCG N+ Y C C+ + D
Sbjct: 3637 ASNLMIEFADFYENYQASTETLQCPRCSASVPANPGVCGNCGENV--YQCHKCRSINYD- 3693
Query: 104 EKGQFHCDDCGICRIGGRENYFHCKRC 130
EK F C+ CG C+ + + K C
Sbjct: 3694 EKDPFLCNACGFCKYARFDFMLYAKPC 3720
>sp|Q8NEZ4|MLL3_HUMAN Histone-lysine N-methyltransferase MLL3 OS=Homo sapiens GN=MLL3
PE=1 SV=3
Length = 4911
Score = 40.8 bits (94), Expect = 0.009, Method: Composition-based stats.
Identities = 37/159 (23%), Positives = 60/159 (37%), Gaps = 37/159 (23%)
Query: 68 CSVCDTEQPVAQ--VCTNCGVNMGEYFCDICKFYDDDIEKGQFHCDDCGICR----IGGR 121
C+VCD+ + CT CG + DI +++ + C +C +C+ G
Sbjct: 344 CAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAV---TPLKRAGWQCPECKVCQNCKQSGED 400
Query: 122 ENYFHCKRCGSCYST---------------SLRNNHLCIE------NSMHHHCPICYEYL 160
C C Y T +N +CIE + HH+C IC +
Sbjct: 401 SKMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNCRICIECGTRSSSQWHHNCLIC-DNC 459
Query: 161 FDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSV 199
+ N CG +CYH +++D C +C + V
Sbjct: 460 YQQQDNLCPF-CG-----KCYHPELQKDMLHCNMCKRWV 492
>sp|Q8BRH4|MLL3_MOUSE Histone-lysine N-methyltransferase MLL3 OS=Mus musculus GN=Mll3
PE=2 SV=2
Length = 4903
Score = 40.4 bits (93), Expect = 0.011, Method: Composition-based stats.
Identities = 37/159 (23%), Positives = 59/159 (37%), Gaps = 37/159 (23%)
Query: 68 CSVCDTEQPVAQ--VCTNCGVNMGEYFCDICKFYDDDIEKGQFHCDDCGICR----IGGR 121
C+VCD+ + CT CG + DI +++ + C +C +C+ G
Sbjct: 343 CAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAV---TPLKRAGWQCPECKVCQNCKQSGED 399
Query: 122 ENYFHCKRCGSCYST---------------SLRNNHLCIE------NSMHHHCPICYEYL 160
C C Y T +N +CIE HH+C IC +
Sbjct: 400 SKMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNCRICIECGTRSSTQWHHNCLIC-DTC 458
Query: 161 FDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSV 199
+ N CG +CYH +++D C +C + V
Sbjct: 459 YQQQDNLCPF-CG-----KCYHPELQKDMLHCNMCKRWV 491
>sp|E7FAP1|RN169_DANRE E3 ubiquitin-protein ligase RNF169 OS=Danio rerio GN=rnf169 PE=3
SV=1
Length = 630
Score = 38.9 bits (89), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 41/95 (43%), Gaps = 7/95 (7%)
Query: 127 CKRCGSCYSTSLRNNHLCIENSMHH-HCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMI 185
K G + R L S+ CP+C E L + + M CGH++ C+ +
Sbjct: 9 AKSTGPGQRSKSRPGALSAPLSLEEARCPVCSEILLEPV----TMPCGHSVCLHCFQRTV 64
Query: 186 KRDKYCCPICSKSVIDMSRTWKRIDEELQMNSSIF 220
K CCP+C V +R R E+ +N+ ++
Sbjct: 65 KLISLCCPLCRLRVSSWARKQSR--EKSLVNAELW 97
>sp|Q6INS5|RN168_XENLA E3 ubiquitin-protein ligase RNF168 OS=Xenopus laevis GN=rnf168 PE=2
SV=1
Length = 557
Score = 38.9 bits (89), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 8/57 (14%)
Query: 153 CPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVIDMSRTWKRI 209
CPIC E L + + + C HT+ C+ +++ CCP C K V TW R+
Sbjct: 16 CPICQEILLEPV----TLPCKHTLCNPCFQMTVEKASLCCPFCRKRV----STWARL 64
>sp|O88196|TTC3_MOUSE E3 ubiquitin-protein ligase TTC3 OS=Mus musculus GN=Ttc3 PE=2 SV=2
Length = 1979
Score = 38.9 bits (89), Expect = 0.029, Method: Composition-based stats.
Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
Query: 153 CPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKS 198
C IC+E +F S +N V+KCGH H C+ + +K + CP C S
Sbjct: 1931 CEICHE-IFKS-KNMRVLKCGHKFHKGCFKQWLK-GQSTCPTCGSS 1973
>sp|P53804|TTC3_HUMAN E3 ubiquitin-protein ligase TTC3 OS=Homo sapiens GN=TTC3 PE=1 SV=2
Length = 2025
Score = 37.7 bits (86), Expect = 0.060, Method: Composition-based stats.
Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 8/71 (11%)
Query: 153 CPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVI-----DMSRTWK 207
C IC+E +F S +N V+KCGH H C+ + +K + CP C + R W
Sbjct: 1957 CEICHE-VFKS-KNVRVLKCGHKYHKGCFKQWLK-GQSACPACQGRDLLTEESPSGRGWP 2013
Query: 208 RIDEELQMNSS 218
++EL SS
Sbjct: 2014 SQNQELPSCSS 2024
>sp|B0BLU1|RN168_XENTR E3 ubiquitin-protein ligase RNF168 OS=Xenopus tropicalis GN=rnf168
PE=2 SV=1
Length = 535
Score = 37.7 bits (86), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 8/56 (14%)
Query: 153 CPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVIDMSRTWKR 208
CPIC E L + + + C HT+ C+ +++ CCP C K V TW R
Sbjct: 16 CPICQEILLEPV----TLPCKHTLCNPCFQMTVEKASLCCPFCRKRV----STWAR 63
>sp|Q7T308|RN168_DANRE E3 ubiquitin-protein ligase RNF168 OS=Danio rerio GN=rnf168 PE=2
SV=1
Length = 474
Score = 37.7 bits (86), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 8/58 (13%)
Query: 153 CPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVIDMSRTWKRID 210
CP+C E + + + C HT C+ E + + CCP+C K V TW R++
Sbjct: 26 CPVCLEIFLEPV----TLPCMHTFCKPCFLETVDKSNMCCPLCRKRV----STWARLN 75
>sp|Q29L39|POE_DROPS Protein purity of essence OS=Drosophila pseudoobscura pseudoobscura
GN=poe PE=3 SV=1
Length = 5381
Score = 37.0 bits (84), Expect = 0.11, Method: Composition-based stats.
Identities = 23/78 (29%), Positives = 33/78 (42%), Gaps = 4/78 (5%)
Query: 54 DRHELVRQDVKQVICSVCDTEQPV-AQVCTNCGVNMGEYFCDICKFYDDDIEKGQFHCDD 112
D E V + + C C P VC NCG N+ + C C+ + D EK F C
Sbjct: 3832 DFFETVSGSSENLQCPRCSAAVPAYPGVCGNCGENV--FQCHKCRAINYD-EKDPFLCHS 3888
Query: 113 CGICRIGGRENYFHCKRC 130
CG C+ + + + C
Sbjct: 3889 CGFCKYAKFDFSMYARVC 3906
>sp|Q9VLT5|POE_DROME Protein purity of essence OS=Drosophila melanogaster GN=poe PE=1 SV=1
Length = 5322
Score = 37.0 bits (84), Expect = 0.11, Method: Composition-based stats.
Identities = 23/78 (29%), Positives = 33/78 (42%), Gaps = 4/78 (5%)
Query: 54 DRHELVRQDVKQVICSVCDTEQPV-AQVCTNCGVNMGEYFCDICKFYDDDIEKGQFHCDD 112
D E V + + C C P VC NCG N+ + C C+ + D EK F C
Sbjct: 3779 DFFETVSGSSENLQCPRCSAAVPAYPGVCGNCGENV--FQCHKCRAINYD-EKDPFLCHS 3835
Query: 113 CGICRIGGRENYFHCKRC 130
CG C+ + + + C
Sbjct: 3836 CGFCKYAKFDFSMYARVC 3853
>sp|Q9Y7K6|YGI4_SCHPO Uncharacterized RING finger protein C2A9.04c OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPBC2A9.04c PE=4 SV=1
Length = 741
Score = 35.8 bits (81), Expect = 0.23, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Query: 153 CPICYEYLFDS-LRNTTVMKCGHTMHCECYHEMIKRDKYC-CPICSKSV 199
CPICY+ + ++ + T M CGH C + + + +C CP+C K V
Sbjct: 107 CPICYDDMNENDEKQATKMPCGHIFGKNCLQKWL--ENHCTCPLCRKEV 153
>sp|P38748|ETP1_YEAST RING finger protein ETP1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=ETP1 PE=1 SV=1
Length = 585
Score = 35.0 bits (79), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Query: 153 CPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVIDMSR 204
CP+C E + + C HT HC+C + K CP+C S + +SR
Sbjct: 240 CPVCLERMDSETTGLVTIPCQHTFHCQCLN---KWKNSRCPVCRHSSLRLSR 288
>sp|Q8NHY2|RFWD2_HUMAN E3 ubiquitin-protein ligase RFWD2 OS=Homo sapiens GN=RFWD2 PE=1
SV=1
Length = 731
Score = 35.0 bits (79), Expect = 0.42, Method: Composition-based stats.
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 5/47 (10%)
Query: 153 CPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSV 199
CPIC FD + + KCGH+ +C H+ ++ D CP C+ V
Sbjct: 136 CPIC----FDMIEEAYMTKCGHSFCYKCIHQSLE-DNNRCPKCNYVV 177
>sp|Q0IIM1|RN168_BOVIN E3 ubiquitin-protein ligase RNF168 OS=Bos taurus GN=RNF168 PE=2
SV=2
Length = 573
Score = 34.7 bits (78), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
Query: 152 HCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVIDMSRTWKRIDE 211
C IC E LF+ + + C HT+ C+ +++ CCP C + V +R R +
Sbjct: 15 QCQICVEILFEPV----TLPCNHTLCKPCFESTVEKASLCCPFCRRRVSSWARYRSRTNS 70
Query: 212 ELQM 215
+ M
Sbjct: 71 LVNM 74
>sp|Q9R1A8|RFWD2_MOUSE E3 ubiquitin-protein ligase RFWD2 OS=Mus musculus GN=Rfwd2 PE=1
SV=2
Length = 733
Score = 34.7 bits (78), Expect = 0.57, Method: Composition-based stats.
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 5/47 (10%)
Query: 153 CPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSV 199
CPIC FD + + KCGH+ +C H+ ++ D CP C+ V
Sbjct: 138 CPIC----FDMIEEAYMTKCGHSFCYKCIHQSLE-DNNRCPKCNYVV 179
>sp|D2HWM5|RFWD3_AILME E3 ubiquitin-protein ligase RFWD3 OS=Ailuropoda melanoleuca
GN=RFWD3 PE=3 SV=1
Length = 773
Score = 34.7 bits (78), Expect = 0.58, Method: Composition-based stats.
Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 9/83 (10%)
Query: 153 CPICYEYLFDSL-RNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKS------VIDMSRT 205
C IC+E+ ++ + ++CGH +C + +K CP C+K V+ +RT
Sbjct: 287 CTICFEHWTNAGDHRLSALRCGHLFGYKCISKWLKGQARKCPQCNKKAKHSDIVVLYART 346
Query: 206 WKRID--EELQMNSSIFFPSFFR 226
+ +D E +M SS+ R
Sbjct: 347 LRALDTSEHERMKSSLLKEQMLR 369
>sp|Q923S6|NEU1A_MOUSE Neuralized-like protein 1A OS=Mus musculus GN=Neurl PE=1 SV=1
Length = 574
Score = 34.7 bits (78), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 5/56 (8%)
Query: 153 CPICYEYLFDSLRNTTVMKCGHTMHC-ECYHEMIKRDKYCCPICSKSVIDMSRTWK 207
C ICYE+ D T + CGH C C + K CCPIC + + D+ +T++
Sbjct: 521 CTICYEHAVD----TVIYTCGHMCLCYSCGLRLKKALHACCPICRRPIKDIIKTYR 572
>sp|O76050|NEU1A_HUMAN Neuralized-like protein 1A OS=Homo sapiens GN=NEURL PE=2 SV=1
Length = 574
Score = 34.3 bits (77), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 5/56 (8%)
Query: 153 CPICYEYLFDSLRNTTVMKCGHTMHC-ECYHEMIKRDKYCCPICSKSVIDMSRTWK 207
C ICYE+ D T + CGH C C + K CCPIC + + D+ +T++
Sbjct: 521 CTICYEHAVD----TVIYTCGHMCLCYACGLRLKKALHACCPICRRPIKDIIKTYR 572
>sp|Q23985|DTX_DROME Protein deltex OS=Drosophila melanogaster GN=dx PE=1 SV=2
Length = 738
Score = 33.9 bits (76), Expect = 0.83, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 10/53 (18%)
Query: 153 CPICYEYLFDSLRN--TTVMKCGHTMHCECYHEMI--------KRDKYCCPIC 195
CP+C E L S +N ++ +C H MH +C + MI K CP+C
Sbjct: 548 CPMCMEELVHSAQNPAISLSRCQHLMHLQCLNGMIIAQQNEMNKNLFIECPVC 600
>sp|Q90972|RNF13_CHICK E3 ubiquitin-protein ligase RNF13 OS=Gallus gallus GN=RNF13 PE=1
SV=1
Length = 381
Score = 33.1 bits (74), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Query: 162 DSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVI 200
D LR ++ C H HC+C + + K CP+C + V+
Sbjct: 251 DKLR---ILPCSHAYHCKCVDPWLTKTKKTCPVCKQKVV 286
>sp|O54965|RNF13_MOUSE E3 ubiquitin-protein ligase RNF13 OS=Mus musculus GN=Rnf13 PE=1
SV=2
Length = 381
Score = 33.1 bits (74), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 153 CPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVI 200
C IC E D + ++ C H HC+C + + K CP+C + V+
Sbjct: 240 CAICLEEYEDGDK-LRILPCSHAYHCKCVDPWLTKTKKTCPVCKQKVV 286
>sp|Q5RCV8|RNF13_PONAB E3 ubiquitin-protein ligase RNF13 OS=Pongo abelii GN=RNF13 PE=2
SV=1
Length = 381
Score = 33.1 bits (74), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Query: 162 DSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVI 200
D LR ++ C H HC+C + + K CP+C + V+
Sbjct: 251 DKLR---ILPCSHAYHCKCVDPWLTKTKKTCPVCKQKVV 286
>sp|O43567|RNF13_HUMAN E3 ubiquitin-protein ligase RNF13 OS=Homo sapiens GN=RNF13 PE=1
SV=1
Length = 381
Score = 33.1 bits (74), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Query: 162 DSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVI 200
D LR ++ C H HC+C + + K CP+C + V+
Sbjct: 251 DKLR---ILPCSHAYHCKCVDPWLTKTKKTCPVCKQKVV 286
>sp|Q0VD51|RNF13_BOVIN E3 ubiquitin-protein ligase RNF13 OS=Bos taurus GN=RNF13 PE=2 SV=1
Length = 380
Score = 33.1 bits (74), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Query: 162 DSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVI 200
D LR ++ C H HC+C + + K CP+C + V+
Sbjct: 251 DKLR---ILPCSHAYHCKCVDPWLTKTKKTCPVCKQKVV 286
>sp|Q66HG0|RNF13_RAT E3 ubiquitin-protein ligase RNF13 OS=Rattus norvegicus GN=Rnf13
PE=2 SV=1
Length = 380
Score = 33.1 bits (74), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 153 CPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVI 200
C IC E D ++ C H HC+C + + K CP+C + V+
Sbjct: 240 CAICLEEYEDG-DKLRILPCSHAYHCKCVDPWLTKTKKTCPVCKQKVV 286
>sp|Q80XJ2|RN168_MOUSE E3 ubiquitin-protein ligase RNF168 OS=Mus musculus GN=Rnf168 PE=2
SV=3
Length = 565
Score = 32.7 bits (73), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
Query: 152 HCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVIDMSR 204
C IC E L + + + C HT+ C+ +++ CCP C + V +R
Sbjct: 15 QCGICMEILLEPV----TLPCNHTLCNPCFQSTVEKANLCCPFCRRRVSSWTR 63
>sp|Q9NQX1|PRDM5_HUMAN PR domain zinc finger protein 5 OS=Homo sapiens GN=PRDM5 PE=1 SV=2
Length = 630
Score = 32.3 bits (72), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 74/181 (40%), Gaps = 33/181 (18%)
Query: 33 NEIFDCRHCHNEAASMLRNPYDRHELVRQDVKQVICSVCDTE-QPVAQVCTNCGVNMGE- 90
+EIFDC+ C + S N RH + + + C +C+ + + QV + ++ +
Sbjct: 317 HEIFDCQECMKKFISA--NQLKRHMITHSEKRPYNCEICNKSFKRLDQVGAHKVIHSEDK 374
Query: 91 -YFCDIC--KFYDDDIEKGQFHCDDCGICRIGGRENYFHCKRCGSCYSTSLR-NNHLCIE 146
Y C +C F ++ K + E F C+ C + + T HL I
Sbjct: 375 PYKCKLCGKGFAHRNVYKNH--------KKTHSEERPFQCEECKALFRTPFSLQRHLLIH 426
Query: 147 NSMH----HHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVIDM 202
NS HHC ++ R T+ +H + HE K KY C +C+K+ +
Sbjct: 427 NSERTFKCHHCDATFK------RKDTL-----NVHVQVVHERHK--KYRCELCNKAFVTP 473
Query: 203 S 203
S
Sbjct: 474 S 474
>sp|B2RYR0|RN168_RAT E3 ubiquitin-protein ligase RNF168 OS=Rattus norvegicus GN=Rnf168
PE=2 SV=1
Length = 564
Score = 32.3 bits (72), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
Query: 152 HCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVIDMSR 204
C IC E L + + + C HT+ C+ +++ CCP C + V +R
Sbjct: 15 QCGICMEILVEPV----TLPCNHTLCNPCFQSTVEKANLCCPFCRRRVSSWTR 63
>sp|O74757|HRD1_SCHPO ERAD-associated E3 ubiquitin-protein ligase hrd1
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=hrd1 PE=1 SV=1
Length = 677
Score = 32.3 bits (72), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 170 MKCGHTMHCECYHEMIKRDKYCCPICSKSVI 200
+ CGH +H C ++R + CPIC +SVI
Sbjct: 326 LPCGHILHFHCLRNWLERQQ-TCPICRRSVI 355
>sp|Q2HJ46|RNF8_BOVIN E3 ubiquitin-protein ligase RNF8 OS=Bos taurus GN=RNF8 PE=2 SV=1
Length = 487
Score = 32.3 bits (72), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 7/62 (11%)
Query: 144 CIENSMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVIDMS 203
+EN + C IC EY +++ + C H+ C +E +KR K CPIC K + +
Sbjct: 398 VLENELQ--CIICSEYFVEAV----TLNCAHSFCSYCINEWMKR-KVECPICRKDIKSKT 450
Query: 204 RT 205
R+
Sbjct: 451 RS 452
>sp|Q8IYW5|RN168_HUMAN E3 ubiquitin-protein ligase RNF168 OS=Homo sapiens GN=RNF168 PE=1
SV=1
Length = 571
Score = 32.0 bits (71), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
Query: 152 HCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVIDMSR 204
C IC E L + + + C HT+ C+ +++ CCP C + V +R
Sbjct: 15 QCGICMEILVEPV----TLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSSWTR 63
>sp|P18750|ZO61_XENLA Oocyte zinc finger protein XlCOF6.1 (Fragment) OS=Xenopus laevis
PE=3 SV=1
Length = 224
Score = 32.0 bits (71), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 40/97 (41%), Gaps = 17/97 (17%)
Query: 58 LVRQDVKQVICSVCDTEQPVAQVCTNCGVNMGEYFCDICKFYDDDIEKGQFHCDDCGIC- 116
R+ V + + E+P + C+ CG + CD+ + Y + F C +CG C
Sbjct: 99 FARRSVLEAHQKIHTGERPFS--CSECGKGFIKQ-CDLARHYRTHTGEKPFPCPECGKCF 155
Query: 117 ----------RIGGRENYFHCKRCGSCYSTSLRNNHL 143
R E F C CG C++ +N+HL
Sbjct: 156 TQSMQLIRHRRTHTGEKPFACSECGKCFA---QNSHL 189
>sp|Q0MW30|NEU1B_MOUSE E3 ubiquitin-protein ligase NEURL1B OS=Mus musculus GN=Neurl1b PE=1
SV=1
Length = 546
Score = 32.0 bits (71), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 5/62 (8%)
Query: 147 NSMHHHCPICYEYLFDSLRNTTVMKCGHTMHC-ECYHEMIKRDKYCCPICSKSVIDMSRT 205
S + C +C FDS +T + CGH C C + ++ + CCPIC + + D+ +
Sbjct: 488 GSRNGECTVC----FDSEVDTVIYTCGHMCLCHGCGLRLRRQARACCPICRRPIKDVIKI 543
Query: 206 WK 207
++
Sbjct: 544 YR 545
>sp|Q9CXE0|PRDM5_MOUSE PR domain zinc finger protein 5 OS=Mus musculus GN=Prdm5 PE=2 SV=2
Length = 599
Score = 31.6 bits (70), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 73/181 (40%), Gaps = 33/181 (18%)
Query: 33 NEIFDCRHCHNEAASMLRNPYDRHELVRQDVKQVICSVCDTE-QPVAQVCTNCGVNMGE- 90
+EIFDC+ C + S N RH + + + C +C+ + + QV + ++ +
Sbjct: 286 HEIFDCQECMKKFISA--NQLKRHMITHSEKRPYNCEICNKSFKRLDQVGAHKVIHSEDK 343
Query: 91 -YFCDIC--KFYDDDIEKGQFHCDDCGICRIGGRENYFHCKRCGSCYSTSLR-NNHLCIE 146
Y C +C F ++ K + E F C C + + T HL I
Sbjct: 344 PYQCKLCGKGFAHRNVYKNH--------KKTHSEERPFQCDACKALFRTPFSLQRHLLIH 395
Query: 147 NSMH----HHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVIDM 202
NS HHC ++ R T+ +H + HE K KY C +C+K+ +
Sbjct: 396 NSERTFKCHHCDATFK------RKDTL-----NVHVQVVHERHK--KYRCELCNKAFVTP 442
Query: 203 S 203
S
Sbjct: 443 S 443
>sp|B8D274|SYM_HALOH Methionine--tRNA ligase OS=Halothermothrix orenii (strain H 168 /
OCM 544 / DSM 9562) GN=metG PE=3 SV=1
Length = 540
Score = 31.6 bits (70), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 41/209 (19%), Positives = 80/209 (38%), Gaps = 31/209 (14%)
Query: 10 TFGKMGYGCKHYRRRCRIRAPCCNEIFDCRHCHNEAASMLRNPYDRHELVRQDVKQVICS 69
TF K+G+ +Y + D H S+++ +++ + ++ KQ+ CS
Sbjct: 79 TFTKLGFSYDNYTKT------------DNPFHHQVVQSIIKKLFEKGYIYKKQTKQLYCS 126
Query: 70 VCDTEQP---VAQVCTNCGVNMGEYFCDICKFYDDDIEKGQFHCDDCGICRIGGRENYFH 126
C P V +C CG + CD C + + + C CG + +F+
Sbjct: 127 KCQQFLPDRYVEGICPVCGKVVRGDQCDYCSSLIEPTDLEEKRCKICGSSPVIKNTEHFY 186
Query: 127 CKRCGSCYSTSLR----NNHLCIENSMHHHCPICYEYLFDSLRNTTV---MKCGHTMHCE 179
S +S L+ NN +N++ + Y+ + L++ + + G ++ E
Sbjct: 187 L--ALSEFSDELKRLLDNNRGWRDNAIK----LSTRYIEEGLQDRAITRDLNWGVSIPFE 240
Query: 180 CYHEMIKRDKYCCPICSKSVIDMSRTWKR 208
Y E + Y + S+ W R
Sbjct: 241 GYEE---KRIYVWIDAVLGYLSASKEWSR 266
>sp|Q5F3B2|RN166_CHICK RING finger protein 166 OS=Gallus gallus GN=RNF166 PE=2 SV=1
Length = 244
Score = 31.6 bits (70), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 4/65 (6%)
Query: 153 CPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVIDMSRTWKRIDEE 212
CPIC E R + CGHT EC ++ CP+C + D + K E
Sbjct: 40 CPICLEVFH---RAVGIAGCGHTFCGECLQPCLQVPSPLCPLC-RMPFDPKKVEKASSVE 95
Query: 213 LQMNS 217
Q++S
Sbjct: 96 KQLSS 100
>sp|P36078|HOT13_YEAST Helper of Tim protein 13 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=HOT13 PE=1 SV=1
Length = 116
Score = 31.2 bits (69), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 12/67 (17%)
Query: 27 IRAPCCNEIFDCRHCHNEAASMLRNPYDRHELVRQDVKQ-VICSVCDTEQPVAQ------ 79
IR CC++ + C CH E +S +P ++++L+ K +IC VC E A+
Sbjct: 29 IRFKCCDKYYACFECHQELSS---HPLEKYDLLDDANKHLIICGVCRHEMTFAEYYDYNS 85
Query: 80 --VCTNC 84
+C NC
Sbjct: 86 NLICPNC 92
>sp|Q94AY3|DRIP2_ARATH E3 ubiquitin protein ligase DRIP2 OS=Arabidopsis thaliana GN=DRIP2
PE=1 SV=1
Length = 420
Score = 31.2 bits (69), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Query: 153 CPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKY-CCPICSKSVIDMSRTWKRIDE 211
CP+C + L D+ TT+ +C HT +C +E I D+ CP+C + R D
Sbjct: 20 CPLCDKLLRDA---TTISECLHTFCRKCIYEKITEDEIESCPVCDIDLGGTPLEKLRPDH 76
Query: 212 ELQMNSSIFFP 222
LQ + FP
Sbjct: 77 ILQDLRAKLFP 87
>sp|Q9SZL4|ATL18_ARATH RING-H2 finger protein ATL18 OS=Arabidopsis thaliana GN=ATL18 PE=2
SV=1
Length = 145
Score = 30.8 bits (68), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 17/73 (23%), Positives = 30/73 (41%), Gaps = 1/73 (1%)
Query: 153 CPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVIDMSRTWKRIDEE 212
CPIC T + +C H H C + R CP+C V+ + + ++
Sbjct: 62 CPICLVEFEAEDAVTHLPRCAHLFHINCIEPWLLRGHLTCPLCRSFVLAPTPPTQNVNNA 121
Query: 213 LQMNSSIFFPSFF 225
+S+++ FF
Sbjct: 122 -HSSSTLYLSIFF 133
>sp|Q5R4I2|RNF8_PONAB E3 ubiquitin-protein ligase RNF8 OS=Pongo abelii GN=RNF8 PE=2 SV=1
Length = 486
Score = 30.8 bits (68), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 7/56 (12%)
Query: 144 CIENSMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSV 199
+EN + C IC EY +++ + C H+ C +E +KR K CPIC K +
Sbjct: 397 VLENELQ--CIICSEYFIEAV----TLNCAHSFCSYCINEWMKR-KIECPICRKDI 445
>sp|Q9XF63|ATL3_ARATH RING-H2 finger protein ATL3 OS=Arabidopsis thaliana GN=ATL3 PE=2
SV=1
Length = 324
Score = 30.8 bits (68), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 152 HCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVI 200
C IC L + + KC H+ H EC +M + CPIC +V+
Sbjct: 126 ECSICLSELVKGDKARLLPKCNHSFHVECI-DMWFQSHSTCPICRNTVL 173
>sp|O76064|RNF8_HUMAN E3 ubiquitin-protein ligase RNF8 OS=Homo sapiens GN=RNF8 PE=1 SV=1
Length = 485
Score = 30.8 bits (68), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 7/56 (12%)
Query: 144 CIENSMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSV 199
+EN + C IC EY +++ + C H+ C +E +KR K CPIC K +
Sbjct: 396 VLENELQ--CIICSEYFIEAV----TLNCAHSFCSYCINEWMKR-KIECPICRKDI 444
>sp|P87119|MU145_SCHPO RING finger protein mug145 OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=mug145 PE=1 SV=1
Length = 309
Score = 30.8 bits (68), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Query: 144 CIENSMHHHCPICY-EYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSK 197
C+ C ICY +Y FD + V+ C H H +C + K CP+C++
Sbjct: 196 CLLEDEEDFCIICYADYAFDDILR--VLPCEHVFHTQCIDTWMTTMKASCPLCNE 248
>sp|Q8LBA0|NIPL2_ARATH NEP1-interacting protein-like 2 OS=Arabidopsis thaliana GN=ATL24
PE=1 SV=2
Length = 223
Score = 30.8 bits (68), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 152 HCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVID 201
HC IC + + ++ KC HT H C + + R CPIC ++V D
Sbjct: 175 HCTICLQDIKTGEITRSLPKCDHTFHLVCVDKWLIRHG-SCPICRQAVKD 223
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.330 0.141 0.499
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 85,540,088
Number of Sequences: 539616
Number of extensions: 3416131
Number of successful extensions: 15294
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 334
Number of HSP's that attempted gapping in prelim test: 14936
Number of HSP's gapped (non-prelim): 655
length of query: 226
length of database: 191,569,459
effective HSP length: 113
effective length of query: 113
effective length of database: 130,592,851
effective search space: 14756992163
effective search space used: 14756992163
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 59 (27.3 bits)