Query 027217
Match_columns 226
No_of_seqs 224 out of 756
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 10:41:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027217.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027217hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dkt_A Ring finger and CHY zin 100.0 5.7E-57 2E-61 368.4 11.7 139 3-151 4-142 (143)
2 2ecm_A Ring finger and CHY zin 99.5 2.2E-14 7.5E-19 96.3 3.3 52 148-200 3-54 (55)
3 2ep4_A Ring finger protein 24; 99.4 1.9E-13 6.3E-18 97.3 4.3 56 146-203 11-66 (74)
4 1iym_A EL5; ring-H2 finger, ub 99.4 1.6E-13 5.5E-18 92.2 3.4 49 150-200 5-54 (55)
5 1x4j_A Ring finger protein 38; 99.4 1.3E-13 4.5E-18 98.6 2.6 53 148-202 21-73 (75)
6 2ecl_A Ring-box protein 2; RNF 99.4 3.7E-13 1.3E-17 98.5 4.9 49 150-200 26-75 (81)
7 2kiz_A E3 ubiquitin-protein li 99.4 3E-13 1E-17 94.9 4.2 53 147-201 11-63 (69)
8 1v87_A Deltex protein 2; ring- 99.3 7.9E-13 2.7E-17 101.3 4.8 56 147-202 22-95 (114)
9 2l0b_A E3 ubiquitin-protein li 99.3 7.3E-13 2.5E-17 98.7 3.8 52 148-201 38-89 (91)
10 2ect_A Ring finger protein 126 99.3 9.6E-13 3.3E-17 94.4 3.4 52 148-201 13-64 (78)
11 3ng2_A RNF4, snurf, ring finge 99.3 1.4E-12 4.9E-17 91.4 3.1 53 148-201 8-63 (71)
12 2ea6_A Ring finger protein 4; 99.3 1.5E-12 5.2E-17 90.5 2.8 52 148-200 13-67 (69)
13 2xeu_A Ring finger protein 4; 99.3 2.2E-12 7.6E-17 88.4 3.5 51 150-201 3-56 (64)
14 1g25_A CDK-activating kinase a 99.3 4E-12 1.4E-16 88.4 4.5 52 150-201 3-55 (65)
15 1chc_A Equine herpes virus-1 r 99.2 4.1E-12 1.4E-16 88.7 3.3 50 149-202 4-53 (68)
16 1e4u_A Transcriptional repress 99.2 1.2E-12 4E-17 96.1 -0.8 61 149-211 10-72 (78)
17 2ct2_A Tripartite motif protei 99.2 1.2E-11 4.2E-16 89.9 4.3 52 149-200 14-67 (88)
18 3dpl_R Ring-box protein 1; ubi 99.2 1.9E-11 6.7E-16 94.5 4.6 49 150-199 48-99 (106)
19 2ecn_A Ring finger protein 141 99.1 2.4E-12 8.3E-17 90.5 -1.1 50 148-203 13-62 (70)
20 2d8t_A Dactylidin, ring finger 99.1 2.4E-11 8.3E-16 85.9 2.9 49 148-201 13-61 (71)
21 2djb_A Polycomb group ring fin 99.1 3.7E-11 1.3E-15 85.2 3.8 49 149-201 14-62 (72)
22 4ap4_A E3 ubiquitin ligase RNF 99.1 3.9E-11 1.3E-15 92.6 3.3 53 148-201 5-60 (133)
23 2csy_A Zinc finger protein 183 99.1 3.7E-11 1.3E-15 86.9 3.0 48 149-201 14-61 (81)
24 2ecy_A TNF receptor-associated 99.1 5.2E-11 1.8E-15 83.0 3.5 48 150-201 15-62 (66)
25 4ayc_A E3 ubiquitin-protein li 99.1 1.5E-10 5.1E-15 92.1 5.4 47 151-202 54-100 (138)
26 3fl2_A E3 ubiquitin-protein li 99.0 9.5E-11 3.2E-15 91.3 3.8 62 150-215 52-115 (124)
27 1t1h_A Gspef-atpub14, armadill 99.0 3.3E-10 1.1E-14 81.0 6.1 66 149-218 7-77 (78)
28 2yur_A Retinoblastoma-binding 99.0 4.7E-11 1.6E-15 85.3 1.5 50 150-203 15-66 (74)
29 3lrq_A E3 ubiquitin-protein li 99.0 8.8E-11 3E-15 88.7 3.0 48 150-200 22-69 (100)
30 2ysl_A Tripartite motif-contai 99.0 2.1E-10 7.3E-15 80.8 4.3 49 148-200 18-68 (73)
31 2d8s_A Cellular modulator of i 99.0 1.3E-10 4.5E-15 85.6 3.3 51 148-200 13-69 (80)
32 2y43_A E3 ubiquitin-protein li 99.0 1.9E-10 6.4E-15 86.1 3.2 48 150-201 22-69 (99)
33 2ckl_B Ubiquitin ligase protei 99.0 2.6E-10 8.9E-15 92.8 4.1 49 150-201 54-102 (165)
34 4a0k_B E3 ubiquitin-protein li 99.0 8E-11 2.7E-15 92.9 0.5 50 149-199 47-110 (117)
35 2ecj_A Tripartite motif-contai 99.0 3.4E-10 1.2E-14 76.2 3.5 43 149-195 14-58 (58)
36 4ap4_A E3 ubiquitin ligase RNF 98.9 4.3E-10 1.5E-14 86.6 4.1 53 148-201 70-125 (133)
37 1rmd_A RAG1; V(D)J recombinati 98.9 2.5E-10 8.4E-15 87.8 2.7 65 150-218 23-89 (116)
38 2ysj_A Tripartite motif-contai 98.9 5.6E-10 1.9E-14 76.8 4.3 43 149-195 19-63 (63)
39 2ckl_A Polycomb group ring fin 98.9 4.5E-10 1.5E-14 85.4 3.6 49 149-201 14-62 (108)
40 2ecw_A Tripartite motif-contai 98.9 7.3E-10 2.5E-14 79.4 4.2 48 149-200 18-70 (85)
41 3ztg_A E3 ubiquitin-protein li 98.9 4.9E-10 1.7E-14 82.5 3.1 48 149-200 12-61 (92)
42 3hct_A TNF receptor-associated 98.9 3.2E-10 1.1E-14 87.8 2.2 64 150-217 18-82 (118)
43 2egp_A Tripartite motif-contai 98.9 1.8E-10 6.1E-15 82.2 0.3 48 150-201 12-65 (79)
44 3l11_A E3 ubiquitin-protein li 98.9 2.8E-10 9.6E-15 87.3 0.5 47 150-200 15-61 (115)
45 2k2d_A Ring finger and CHY zin 98.9 2.6E-10 8.9E-15 84.4 0.0 29 192-220 1-29 (79)
46 1jm7_A BRCA1, breast cancer ty 98.9 4.1E-09 1.4E-13 79.7 6.6 47 150-200 21-69 (112)
47 2ecv_A Tripartite motif-contai 98.9 1.3E-09 4.3E-14 78.1 3.5 49 149-201 18-71 (85)
48 1z6u_A NP95-like ring finger p 98.8 2.3E-09 8E-14 86.9 3.6 48 150-201 78-125 (150)
49 2vje_A E3 ubiquitin-protein li 98.7 1E-08 3.5E-13 71.8 3.6 51 147-202 5-58 (64)
50 2vje_B MDM4 protein; proto-onc 98.6 1.4E-08 4.9E-13 70.8 3.4 50 148-202 5-57 (63)
51 3knv_A TNF receptor-associated 98.6 3.6E-09 1.2E-13 85.1 -0.4 47 149-199 30-76 (141)
52 3hcs_A TNF receptor-associated 98.6 1.3E-08 4.5E-13 82.9 2.3 64 150-217 18-82 (170)
53 1bor_A Transcription factor PM 98.6 7.2E-09 2.5E-13 70.5 0.4 45 148-200 4-48 (56)
54 4ic3_A E3 ubiquitin-protein li 98.5 8.4E-09 2.9E-13 73.9 -0.0 44 150-202 24-68 (74)
55 1jm7_B BARD1, BRCA1-associated 98.5 1.2E-08 4E-13 78.8 0.8 45 150-200 22-66 (117)
56 2y1n_A E3 ubiquitin-protein li 98.5 7.3E-08 2.5E-12 89.7 4.8 49 149-201 331-379 (389)
57 2ct0_A Non-SMC element 1 homol 98.5 8E-08 2.7E-12 70.0 3.8 48 150-200 15-63 (74)
58 1wim_A KIAA0161 protein; ring 98.4 2.8E-07 9.7E-12 68.3 5.2 49 149-198 4-61 (94)
59 2kr4_A Ubiquitin conjugation f 98.4 2E-07 6.8E-12 68.6 3.4 47 149-200 13-59 (85)
60 2ecg_A Baculoviral IAP repeat- 98.3 1.9E-07 6.3E-12 66.8 2.8 43 150-201 25-68 (75)
61 2ea5_A Cell growth regulator w 98.3 1.1E-07 3.8E-12 67.4 1.5 47 148-203 13-60 (68)
62 1vyx_A ORF K3, K3RING; zinc-bi 98.3 3.2E-07 1.1E-11 63.9 3.8 50 146-199 2-57 (60)
63 2kre_A Ubiquitin conjugation f 98.3 3E-07 1E-11 69.9 3.3 47 149-200 28-74 (100)
64 1wgm_A Ubiquitin conjugation f 98.3 4.9E-07 1.7E-11 68.5 3.5 46 150-200 22-68 (98)
65 2yu4_A E3 SUMO-protein ligase 98.3 5.5E-07 1.9E-11 67.2 3.6 47 149-198 6-59 (94)
66 2c2l_A CHIP, carboxy terminus 98.2 6.8E-07 2.3E-11 76.5 3.6 68 147-218 205-277 (281)
67 2yho_A E3 ubiquitin-protein li 98.2 1.7E-07 6E-12 68.2 -0.6 44 150-202 18-62 (79)
68 3k1l_B Fancl; UBC, ring, RWD, 98.2 4.3E-07 1.5E-11 83.7 1.7 53 148-200 306-372 (381)
69 3htk_C E3 SUMO-protein ligase 97.9 4.2E-06 1.4E-10 74.3 2.5 50 148-200 179-231 (267)
70 2f42_A STIP1 homology and U-bo 97.9 6.7E-06 2.3E-10 69.0 3.1 48 149-200 105-152 (179)
71 3t6p_A Baculoviral IAP repeat- 97.7 7E-06 2.4E-10 75.1 1.0 44 150-202 295-339 (345)
72 2bay_A PRE-mRNA splicing facto 97.5 4E-05 1.4E-09 53.2 2.4 48 149-200 2-49 (61)
73 3vk6_A E3 ubiquitin-protein li 97.5 6.8E-05 2.3E-09 57.7 3.3 49 152-203 3-51 (101)
74 3nw0_A Non-structural maintena 96.1 0.0035 1.2E-07 54.4 3.4 47 150-199 180-227 (238)
75 2lbm_A Transcriptional regulat 91.2 0.16 5.6E-06 40.9 3.7 67 145-215 58-139 (142)
76 2ko5_A Ring finger protein Z; 91.2 0.08 2.7E-06 40.2 1.7 44 150-200 28-72 (99)
77 2jrp_A Putative cytoplasmic pr 90.2 0.076 2.6E-06 39.1 0.8 28 67-99 33-60 (81)
78 2jun_A Midline-1; B-BOX, TRIM, 88.7 0.22 7.6E-06 36.4 2.4 33 150-184 3-36 (101)
79 2ysm_A Myeloid/lymphoid or mix 83.4 0.16 5.6E-06 38.3 -0.8 84 112-199 9-105 (111)
80 3v43_A Histone acetyltransfera 81.7 0.27 9.3E-06 37.4 -0.1 76 119-197 21-111 (112)
81 2jne_A Hypothetical protein YF 78.8 1.3 4.5E-05 33.7 2.8 9 89-97 80-88 (101)
82 2ysm_A Myeloid/lymphoid or mix 75.3 2.7 9.3E-05 31.4 3.8 69 64-136 6-81 (111)
83 2kwj_A Zinc finger protein DPF 73.0 0.14 4.7E-06 39.2 -4.1 86 111-200 2-110 (114)
84 1weo_A Cellulose synthase, cat 70.8 6.7 0.00023 29.3 4.9 56 145-200 11-69 (93)
85 4bbq_A Lysine-specific demethy 69.5 0.59 2E-05 35.3 -1.2 27 171-197 80-113 (117)
86 2lri_C Autoimmune regulator; Z 69.1 2.2 7.4E-05 29.7 1.8 46 149-198 11-59 (66)
87 3ql9_A Transcriptional regulat 67.9 4.1 0.00014 32.1 3.4 68 129-200 36-113 (129)
88 1zfo_A LAsp-1; LIM domain, zin 65.4 1.7 5.7E-05 25.7 0.5 30 149-181 2-31 (31)
89 2egq_A FHL1 protein; LIM domai 59.9 3.2 0.00011 28.3 1.2 41 150-201 15-58 (77)
90 2dkt_A Ring finger and CHY zin 59.6 2.8 9.6E-05 33.8 1.0 32 89-120 97-128 (143)
91 1x61_A Thyroid receptor intera 59.0 4.8 0.00016 27.0 2.0 39 151-200 6-44 (72)
92 1g47_A Pinch protein; LIM doma 58.4 4.3 0.00015 27.6 1.7 43 148-201 9-51 (77)
93 3lqh_A Histone-lysine N-methyl 58.1 3.6 0.00012 34.1 1.4 51 151-201 3-66 (183)
94 1x63_A Skeletal muscle LIM-pro 57.1 4.2 0.00014 28.0 1.5 41 150-201 15-55 (82)
95 2k4x_A 30S ribosomal protein S 55.1 8.9 0.0003 25.7 2.8 9 78-86 18-26 (55)
96 3mjh_B Early endosome antigen 54.4 7.4 0.00025 23.9 2.1 16 189-204 5-20 (34)
97 1f62_A Transcription factor WS 52.5 6.5 0.00022 25.2 1.7 46 152-198 2-50 (51)
98 4ayb_P DNA-directed RNA polyme 52.4 6.6 0.00022 26.0 1.7 20 67-86 5-31 (48)
99 1wyh_A SLIM 2, skeletal muscle 51.4 4.8 0.00016 26.9 1.0 40 151-201 6-45 (72)
100 1x4l_A Skeletal muscle LIM-pro 51.0 8 0.00027 25.9 2.1 41 150-201 5-47 (72)
101 1wil_A KIAA1045 protein; ring 50.8 14 0.00046 27.4 3.4 44 148-196 13-74 (89)
102 1klr_A Zinc finger Y-chromosom 50.7 11 0.00038 19.2 2.3 19 189-207 2-20 (30)
103 1iml_A CRIP, cysteine rich int 49.5 4 0.00014 27.8 0.3 7 153-159 30-36 (76)
104 2jvx_A NF-kappa-B essential mo 48.5 6.3 0.00021 23.2 1.0 16 189-204 3-18 (28)
105 3j20_Y 30S ribosomal protein S 48.0 8.3 0.00028 25.4 1.7 10 78-87 19-28 (50)
106 1x4k_A Skeletal muscle LIM-pro 47.7 7.5 0.00026 25.9 1.5 40 151-201 6-45 (72)
107 2k16_A Transcription initiatio 47.6 3.2 0.00011 28.9 -0.5 49 151-200 19-70 (75)
108 2ehe_A Four and A half LIM dom 46.8 8.7 0.0003 26.4 1.8 41 150-201 15-55 (82)
109 1x68_A FHL5 protein; four-and- 46.4 9 0.00031 26.0 1.8 41 150-201 5-47 (76)
110 2cu8_A Cysteine-rich protein 2 45.7 6.8 0.00023 26.6 1.0 40 150-201 9-48 (76)
111 1x6a_A LIMK-2, LIM domain kina 45.7 8.2 0.00028 26.5 1.5 37 151-200 16-52 (81)
112 1we9_A PHD finger family prote 45.3 1.7 5.7E-05 29.4 -2.2 49 150-198 6-58 (64)
113 2jrp_A Putative cytoplasmic pr 44.7 9.1 0.00031 27.9 1.6 25 66-90 19-43 (81)
114 2co8_A NEDD9 interacting prote 44.2 8.4 0.00029 26.8 1.3 43 148-202 13-55 (82)
115 2kvf_A Zinc finger and BTB dom 44.2 12 0.00041 19.1 1.7 16 189-204 3-18 (28)
116 2m0e_A Zinc finger and BTB dom 44.1 15 0.00052 18.5 2.1 18 189-206 2-19 (29)
117 2cup_A Skeletal muscle LIM-pro 43.5 8.3 0.00028 27.5 1.2 43 152-200 35-77 (101)
118 2dj7_A Actin-binding LIM prote 43.4 11 0.00039 26.1 1.9 40 149-200 14-53 (80)
119 1znf_A 31ST zinc finger from X 42.8 13 0.00046 18.6 1.8 15 190-204 2-16 (27)
120 2l5u_A Chromodomain-helicase-D 42.7 8.6 0.00029 25.9 1.1 48 147-198 8-58 (61)
121 1ard_A Yeast transcription fac 42.6 19 0.00065 18.2 2.4 16 189-204 2-17 (29)
122 3i2d_A E3 SUMO-protein ligase 42.5 17 0.00058 33.4 3.4 48 150-200 249-299 (371)
123 4fo9_A E3 SUMO-protein ligase 40.8 18 0.00062 33.0 3.3 47 151-200 216-265 (360)
124 2elr_A Zinc finger protein 406 40.5 21 0.00071 19.4 2.5 20 188-207 8-27 (36)
125 2kvg_A Zinc finger and BTB dom 40.4 12 0.0004 19.3 1.3 16 189-204 3-18 (27)
126 1p7a_A BF3, BKLF, kruppel-like 40.4 20 0.00069 19.6 2.4 18 188-205 10-27 (37)
127 1qxf_A GR2, 30S ribosomal prot 39.9 11 0.00039 26.5 1.4 35 65-99 7-47 (66)
128 1ryq_A DNA-directed RNA polyme 39.7 16 0.00056 25.8 2.2 24 63-87 9-32 (69)
129 2fiy_A Protein FDHE homolog; F 39.1 23 0.0008 31.5 3.7 24 64-87 207-231 (309)
130 2cor_A Pinch protein; LIM doma 39.0 13 0.00044 25.7 1.6 40 149-201 14-53 (79)
131 2kvh_A Zinc finger and BTB dom 39.0 15 0.0005 18.7 1.5 16 189-204 3-18 (27)
132 1x3h_A Leupaxin; paxillin fami 38.9 14 0.00047 25.2 1.7 38 151-201 16-53 (80)
133 2dar_A PDZ and LIM domain prot 38.6 13 0.00044 26.2 1.6 41 148-201 23-63 (90)
134 1rim_A E6APC2 peptide; E6-bind 38.5 23 0.00079 19.3 2.4 20 189-208 2-21 (33)
135 2d8x_A Protein pinch; LIM doma 38.4 14 0.00048 24.5 1.7 38 151-201 6-43 (70)
136 3lpe_B DNA-directed RNA polyme 38.3 14 0.00047 25.3 1.6 19 67-86 3-21 (59)
137 3v43_A Histone acetyltransfera 38.1 31 0.0011 25.7 3.8 26 171-196 31-62 (112)
138 1rik_A E6APC1 peptide; E6-bind 37.7 16 0.00056 18.6 1.6 16 189-204 2-17 (29)
139 1paa_A Yeast transcription fac 37.5 20 0.00068 18.4 2.0 18 189-206 2-19 (30)
140 2m0f_A Zinc finger and BTB dom 37.3 18 0.00063 18.2 1.8 16 189-204 2-17 (29)
141 3f6q_B LIM and senescent cell 37.0 11 0.00039 24.7 1.0 44 148-202 9-52 (72)
142 3u5c_f 40S ribosomal protein S 36.8 17 0.00059 28.9 2.2 21 78-98 118-146 (152)
143 1x5w_A Zinc finger protein 64, 36.7 22 0.00075 22.8 2.5 32 188-219 36-67 (70)
144 2m0d_A Zinc finger and BTB dom 36.5 17 0.00057 18.5 1.5 17 189-205 3-19 (30)
145 1mm2_A MI2-beta; PHD, zinc fin 36.0 6.1 0.00021 26.7 -0.5 49 148-200 7-58 (61)
146 2cur_A Skeletal muscle LIM-pro 35.4 18 0.00061 23.9 1.8 37 151-200 6-42 (69)
147 3u5c_b RP61, YS20, 40S ribosom 34.9 24 0.00081 25.8 2.5 35 64-98 33-73 (82)
148 2emz_A ZFP-95, zinc finger pro 34.7 40 0.0014 19.5 3.3 22 188-209 11-32 (46)
149 1vq8_Z 50S ribosomal protein L 34.6 15 0.00052 26.7 1.4 32 78-120 27-58 (83)
150 2kdx_A HYPA, hydrogenase/ureas 34.6 12 0.00041 28.2 1.0 10 65-74 73-82 (119)
151 3j20_W 30S ribosomal protein S 34.3 16 0.00056 25.4 1.5 35 64-98 14-54 (63)
152 3gox_A Restriction endonucleas 33.3 43 0.0015 28.2 4.2 73 117-200 68-148 (200)
153 2elx_A Zinc finger protein 406 33.1 20 0.00067 19.2 1.5 18 188-205 6-23 (35)
154 2l3k_A Rhombotin-2, linker, LI 33.1 14 0.00047 27.7 1.0 14 173-186 57-70 (123)
155 1v6g_A Actin binding LIM prote 33.1 18 0.00062 24.7 1.6 39 150-201 15-53 (81)
156 2ytm_A Zinc finger protein 28 33.0 38 0.0013 19.7 3.0 22 188-209 11-32 (46)
157 1nyp_A Pinch protein; LIM doma 32.9 8.8 0.0003 25.2 -0.1 38 151-201 6-43 (66)
158 2ayj_A 50S ribosomal protein L 31.8 35 0.0012 23.2 2.8 26 62-87 16-42 (56)
159 2lvu_A Zinc finger and BTB dom 37.6 10 0.00034 19.2 0.0 15 189-203 2-16 (26)
160 2elv_A Zinc finger protein 406 31.2 22 0.00075 19.4 1.5 17 188-204 8-24 (36)
161 2yte_A Zinc finger protein 473 31.0 31 0.0011 19.4 2.2 20 188-207 9-28 (42)
162 2elo_A Zinc finger protein 406 30.9 23 0.00077 19.4 1.5 18 188-205 8-25 (37)
163 2els_A Zinc finger protein 406 30.8 23 0.00078 19.3 1.5 18 188-205 8-25 (36)
164 2e6s_A E3 ubiquitin-protein li 30.6 13 0.00046 26.3 0.6 65 122-197 8-76 (77)
165 2iyb_E Testin, TESS, TES; LIM 30.2 14 0.00048 24.3 0.6 38 152-200 4-43 (65)
166 3a7q_B Low-density lipoprotein 29.9 41 0.0014 21.0 2.7 31 123-154 11-43 (44)
167 1m3v_A FLIN4, fusion of the LI 29.9 44 0.0015 24.8 3.4 49 152-202 34-82 (122)
168 1ajj_A LR5, low-density lipopr 29.8 33 0.0011 20.5 2.2 31 123-154 5-37 (37)
169 2elt_A Zinc finger protein 406 29.7 24 0.00083 19.0 1.5 18 188-205 8-25 (36)
170 3uk3_C Zinc finger protein 217 29.7 39 0.0013 20.3 2.7 20 188-207 31-50 (57)
171 2elq_A Zinc finger protein 406 29.7 24 0.00083 19.2 1.5 18 188-205 8-25 (36)
172 1vd4_A Transcription initiatio 29.6 30 0.001 22.0 2.1 10 80-89 16-25 (62)
173 2cuq_A Four and A half LIM dom 29.3 28 0.00095 23.5 2.0 38 150-200 15-52 (80)
174 3iz6_X 40S ribosomal protein S 29.3 30 0.001 25.5 2.2 35 65-99 36-76 (86)
175 2lvt_A Zinc finger and BTB dom 35.3 12 0.00039 19.4 0.0 16 189-204 2-17 (29)
176 2epx_A Zinc finger protein 28 29.1 36 0.0012 19.6 2.4 20 188-207 11-30 (47)
177 2xzm_6 RPS27E; ribosome, trans 28.8 22 0.00077 25.9 1.5 36 64-99 31-72 (81)
178 2en7_A Zinc finger protein 268 28.7 40 0.0014 19.1 2.5 20 188-207 11-30 (44)
179 2lvr_A Zinc finger and BTB dom 34.7 12 0.00041 19.2 0.0 16 189-204 3-18 (30)
180 1twf_L ABC10-alpha, DNA-direct 28.5 27 0.00093 24.5 1.9 7 109-115 47-53 (70)
181 1srk_A Zinc finger protein ZFP 28.4 30 0.001 18.6 1.7 18 188-205 6-23 (35)
182 2d8z_A Four and A half LIM dom 28.2 18 0.00062 23.8 0.9 37 151-200 6-42 (70)
183 2ytb_A Zinc finger protein 32; 28.0 26 0.0009 19.7 1.5 18 188-205 10-27 (42)
184 1qyp_A RNA polymerase II; tran 28.0 35 0.0012 22.3 2.3 34 80-114 17-50 (57)
185 2eoo_A ZFP-95, zinc finger pro 27.9 40 0.0014 19.5 2.4 22 188-209 11-32 (46)
186 2dlo_A Thyroid receptor-intera 27.8 23 0.00077 24.2 1.4 37 151-200 16-52 (81)
187 2eou_A Zinc finger protein 473 27.8 45 0.0015 19.1 2.6 21 188-208 11-31 (44)
188 3shb_A E3 ubiquitin-protein li 27.7 41 0.0014 23.8 2.7 21 115-135 31-52 (77)
189 2yt5_A Metal-response element- 27.6 34 0.0012 22.7 2.2 8 151-158 53-60 (66)
190 2eos_A B-cell lymphoma 6 prote 27.6 32 0.0011 19.5 1.8 17 188-204 10-26 (42)
191 2eoq_A Zinc finger protein 224 27.6 41 0.0014 19.4 2.4 21 188-208 11-31 (46)
192 6rxn_A Rubredoxin; electron tr 27.6 31 0.0011 22.3 1.9 13 88-100 2-15 (46)
193 2kgg_A Histone demethylase jar 27.4 10 0.00034 24.6 -0.6 45 152-196 4-52 (52)
194 2enf_A Zinc finger protein 347 27.2 42 0.0014 19.3 2.4 18 188-205 11-28 (46)
195 2eop_A Zinc finger protein 268 27.1 43 0.0015 19.2 2.4 19 188-206 11-29 (46)
196 2emk_A Zinc finger protein 28 27.1 38 0.0013 19.6 2.2 22 188-209 11-32 (46)
197 2puy_A PHD finger protein 21A; 27.1 56 0.0019 21.4 3.2 23 111-135 6-28 (60)
198 2ytt_A Zinc finger protein 473 27.0 53 0.0018 18.9 2.8 21 188-208 11-31 (46)
199 2ytr_A Zinc finger protein 347 26.9 43 0.0015 19.2 2.4 18 188-205 11-28 (46)
200 2elp_A Zinc finger protein 406 26.8 30 0.001 18.9 1.6 20 188-207 8-28 (37)
201 2en3_A ZFP-95, zinc finger pro 26.8 48 0.0016 19.1 2.6 22 188-209 11-32 (46)
202 2eoh_A Zinc finger protein 28 26.7 43 0.0015 19.4 2.4 21 188-208 11-31 (46)
203 2v3b_B Rubredoxin 2, rubredoxi 26.7 36 0.0012 22.7 2.2 14 88-101 1-15 (55)
204 2eq3_A Zinc finger protein 347 26.7 36 0.0012 19.6 2.0 19 188-206 11-29 (46)
205 1njq_A Superman protein; zinc- 26.7 33 0.0011 19.1 1.8 20 188-207 5-24 (39)
206 2eov_A Zinc finger protein 484 26.7 44 0.0015 19.2 2.4 21 188-208 11-31 (46)
207 2eor_A Zinc finger protein 224 26.6 42 0.0014 19.3 2.3 22 188-209 11-32 (46)
208 1wig_A KIAA1808 protein; LIM d 26.6 27 0.00092 23.6 1.5 36 152-200 7-42 (73)
209 2yti_A Zinc finger protein 347 26.6 43 0.0015 19.3 2.4 18 188-205 11-28 (46)
210 2ely_A Zinc finger protein 224 26.5 40 0.0014 19.5 2.2 21 188-208 11-31 (46)
211 2epc_A Zinc finger protein 32; 26.3 33 0.0011 19.3 1.7 21 188-208 10-30 (42)
212 2emg_A Zinc finger protein 484 26.3 41 0.0014 19.4 2.2 19 188-206 11-29 (46)
213 1fv5_A First zinc finger of U- 26.2 33 0.0011 20.3 1.7 21 188-208 7-27 (36)
214 1wep_A PHF8; structural genomi 26.1 30 0.001 24.1 1.8 48 152-200 14-65 (79)
215 2emp_A Zinc finger protein 347 26.0 42 0.0014 19.4 2.2 22 188-209 11-32 (46)
216 2eon_A ZFP-95, zinc finger pro 25.9 36 0.0012 19.8 1.9 19 188-206 11-29 (46)
217 2emh_A Zinc finger protein 484 25.8 44 0.0015 19.3 2.3 21 188-208 11-31 (46)
218 2pv0_B DNA (cytosine-5)-methyl 25.5 51 0.0017 30.4 3.6 69 127-199 70-149 (386)
219 2ene_A Zinc finger protein 347 25.5 35 0.0012 19.7 1.8 19 188-206 11-29 (46)
220 3u5n_A E3 ubiquitin-protein li 25.4 12 0.00042 30.8 -0.5 45 148-199 5-55 (207)
221 2eoj_A Zinc finger protein 268 25.3 35 0.0012 19.4 1.8 18 188-205 11-28 (44)
222 2epz_A Zinc finger protein 28 25.1 48 0.0016 19.1 2.4 18 188-205 11-28 (46)
223 2em8_A Zinc finger protein 224 25.1 44 0.0015 19.3 2.2 21 188-208 11-31 (46)
224 2en9_A Zinc finger protein 28 25.0 51 0.0017 19.0 2.5 21 188-208 11-31 (46)
225 2ep1_A Zinc finger protein 484 24.9 50 0.0017 18.9 2.4 20 188-207 11-30 (46)
226 2eq2_A Zinc finger protein 347 24.7 38 0.0013 19.5 1.8 20 188-207 11-30 (46)
227 2em5_A ZFP-95, zinc finger pro 24.7 36 0.0012 19.7 1.7 21 188-208 11-31 (46)
228 2ytq_A Zinc finger protein 268 24.6 50 0.0017 19.1 2.4 17 188-204 11-27 (46)
229 2eq1_A Zinc finger protein 347 24.5 51 0.0017 19.0 2.4 18 188-205 11-28 (46)
230 2emy_A Zinc finger protein 268 24.4 40 0.0014 19.4 1.9 21 188-208 11-31 (46)
231 2em6_A Zinc finger protein 224 24.4 46 0.0016 19.2 2.2 19 188-206 11-29 (46)
232 1vfy_A Phosphatidylinositol-3- 24.4 44 0.0015 22.9 2.4 22 80-114 13-34 (73)
233 2eoe_A Zinc finger protein 347 24.3 43 0.0015 19.2 2.0 20 188-207 11-30 (46)
234 2eom_A ZFP-95, zinc finger pro 23.8 49 0.0017 19.2 2.2 21 188-208 11-31 (46)
235 1bbo_A Human enhancer-binding 23.8 47 0.0016 19.9 2.2 17 190-206 2-18 (57)
236 2epw_A Zinc finger protein 268 23.6 41 0.0014 19.3 1.8 21 188-208 11-31 (46)
237 2ctd_A Zinc finger protein 512 23.4 74 0.0025 22.2 3.5 34 188-223 61-94 (96)
238 1ptq_A Protein kinase C delta 23.4 47 0.0016 20.7 2.1 11 104-114 25-35 (50)
239 2emj_A Zinc finger protein 28 23.2 45 0.0015 19.3 2.0 21 188-208 11-31 (46)
240 1v5n_A PDI-like hypothetical p 23.2 39 0.0013 24.4 1.9 10 123-132 60-69 (89)
241 1x4s_A Protein FON, zinc finge 23.2 29 0.00098 23.8 1.1 24 64-87 10-35 (59)
242 2ep2_A Zinc finger protein 484 23.2 40 0.0014 19.4 1.7 21 188-208 11-31 (46)
243 2emx_A Zinc finger protein 268 23.1 42 0.0014 19.1 1.8 21 188-208 9-29 (44)
244 2eq4_A Zinc finger protein 224 23.1 50 0.0017 18.9 2.2 20 188-207 11-30 (46)
245 3p8b_A DNA-directed RNA polyme 23.0 37 0.0013 24.7 1.7 22 65-87 23-44 (81)
246 2emi_A Zinc finger protein 484 23.0 41 0.0014 19.4 1.7 18 188-205 11-28 (46)
247 2ytf_A Zinc finger protein 268 22.8 41 0.0014 19.3 1.7 20 188-207 11-30 (46)
248 2en2_A B-cell lymphoma 6 prote 22.8 39 0.0013 19.0 1.6 21 188-208 10-30 (42)
249 2el5_A Zinc finger protein 268 22.8 42 0.0014 18.8 1.7 18 188-205 9-26 (42)
250 2enh_A Zinc finger protein 28 22.7 50 0.0017 19.0 2.1 18 188-205 11-28 (46)
251 2em0_A Zinc finger protein 224 22.6 42 0.0014 19.3 1.7 20 188-207 11-30 (46)
252 2ysp_A Zinc finger protein 224 22.6 38 0.0013 19.6 1.5 18 188-205 11-28 (46)
253 2yu8_A Zinc finger protein 347 22.5 45 0.0015 19.2 1.8 21 188-208 11-31 (46)
254 2el6_A Zinc finger protein 268 22.5 43 0.0015 19.4 1.8 19 188-206 11-29 (46)
255 3u6p_A Formamidopyrimidine-DNA 22.4 38 0.0013 29.3 2.0 19 78-96 245-271 (273)
256 2yts_A Zinc finger protein 484 22.3 35 0.0012 19.6 1.3 20 188-207 11-30 (46)
257 2eow_A Zinc finger protein 347 22.3 44 0.0015 19.2 1.8 22 188-209 11-32 (46)
258 2elz_A Zinc finger protein 224 22.3 49 0.0017 19.1 2.0 18 188-205 11-28 (46)
259 2ytn_A Zinc finger protein 347 22.3 50 0.0017 19.0 2.0 17 188-204 11-27 (46)
260 2ep3_A Zinc finger protein 484 22.3 43 0.0015 19.3 1.7 20 188-207 11-30 (46)
261 2en8_A Zinc finger protein 224 22.2 44 0.0015 19.2 1.8 20 188-207 11-30 (46)
262 2adr_A ADR1; transcription reg 22.1 57 0.0019 19.8 2.4 14 190-203 31-44 (60)
263 2epv_A Zinc finger protein 268 22.1 44 0.0015 19.2 1.7 21 188-208 11-31 (44)
264 2xzf_A Formamidopyrimidine-DNA 22.0 39 0.0013 29.1 2.0 20 78-97 242-269 (271)
265 4esj_A Type-2 restriction enzy 22.0 39 0.0013 29.5 2.0 19 79-97 35-63 (257)
266 2epq_A POZ-, at HOOK-, and zin 22.0 50 0.0017 18.9 2.0 21 188-208 9-29 (45)
267 1k3x_A Endonuclease VIII; hydr 21.7 40 0.0014 28.9 2.0 19 78-96 234-260 (262)
268 2eme_A Zinc finger protein 473 21.6 45 0.0015 19.1 1.7 20 188-207 11-30 (46)
269 2eof_A Zinc finger protein 268 21.6 41 0.0014 19.0 1.5 20 188-207 11-30 (44)
270 2enc_A Zinc finger protein 224 21.5 45 0.0016 19.2 1.7 21 188-208 11-31 (46)
271 2em3_A Zinc finger protein 28 21.5 41 0.0014 19.4 1.5 22 188-209 11-32 (46)
272 2ept_A Zinc finger protein 32; 21.5 38 0.0013 19.0 1.3 17 188-204 9-25 (41)
273 2eml_A Zinc finger protein 28 21.5 46 0.0016 19.2 1.7 18 188-205 11-28 (46)
274 2emm_A ZFP-95, zinc finger pro 21.5 46 0.0016 19.1 1.7 21 188-208 11-31 (46)
275 2eoy_A Zinc finger protein 473 21.5 42 0.0015 19.4 1.6 18 188-205 11-28 (46)
276 1k82_A Formamidopyrimidine-DNA 21.4 41 0.0014 29.0 2.0 19 78-96 240-266 (268)
277 2em4_A Zinc finger protein 28 21.3 44 0.0015 19.3 1.6 21 188-208 11-31 (46)
278 1x62_A C-terminal LIM domain p 21.3 41 0.0014 22.8 1.7 38 150-200 15-52 (79)
279 1ee8_A MUTM (FPG) protein; bet 21.3 41 0.0014 28.9 2.0 20 78-97 235-262 (266)
280 2eq0_A Zinc finger protein 347 21.3 47 0.0016 19.1 1.8 18 188-205 11-28 (46)
281 3h0g_L DNA-directed RNA polyme 21.2 49 0.0017 22.8 2.0 9 106-114 37-45 (63)
282 2yto_A Zinc finger protein 484 21.0 40 0.0014 19.5 1.4 21 188-208 11-31 (46)
283 2yth_A Zinc finger protein 224 21.0 47 0.0016 19.2 1.7 18 188-205 11-28 (46)
284 1a7i_A QCRP2 (LIM1); LIM domai 20.9 20 0.00067 24.5 -0.1 39 151-201 8-46 (81)
285 2ytj_A Zinc finger protein 484 20.8 48 0.0016 19.1 1.7 21 188-208 11-31 (46)
286 2i5o_A DNA polymerase ETA; zin 20.8 53 0.0018 20.5 1.9 27 188-215 8-34 (39)
287 2yu5_A Zinc finger protein 473 20.7 51 0.0017 18.7 1.8 18 188-205 11-28 (44)
288 3a43_A HYPD, hydrogenase nicke 20.7 47 0.0016 25.8 2.1 10 65-74 70-79 (139)
289 2yrj_A Zinc finger protein 473 20.7 49 0.0017 19.0 1.7 18 188-205 11-28 (46)
290 1x64_A Alpha-actinin-2 associa 20.6 45 0.0015 23.1 1.8 40 149-201 24-63 (89)
291 2djr_A Zinc finger BED domain- 20.4 87 0.003 22.2 3.3 35 189-223 28-73 (76)
292 2eoz_A Zinc finger protein 473 20.3 37 0.0013 19.6 1.1 21 188-208 11-31 (46)
293 2yrm_A B-cell lymphoma 6 prote 20.1 69 0.0024 18.2 2.3 20 188-207 9-28 (43)
294 2ku3_A Bromodomain-containing 20.1 74 0.0025 22.0 2.8 51 146-197 12-65 (71)
295 1sp2_A SP1F2; zinc finger, tra 20.1 71 0.0024 16.4 2.2 16 189-204 2-19 (31)
296 2en6_A Zinc finger protein 268 20.1 42 0.0014 19.3 1.3 21 188-208 11-31 (46)
297 2ytp_A Zinc finger protein 484 20.0 51 0.0017 19.0 1.7 18 188-205 11-28 (46)
No 1
>2dkt_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.89.1.1 g.93.1.1 PDB: 2k2c_A
Probab=100.00 E-value=5.7e-57 Score=368.39 Aligned_cols=139 Identities=42% Similarity=1.050 Sum_probs=131.9
Q ss_pred CCccccccCCCCccCcccccccceeecCCCCCcccChhhHHhhhcCCCCCCCCccccccccceeEeCCCCccccccccCC
Q 027217 3 GSANERITFGKMGYGCKHYRRRCRIRAPCCNEIFDCRHCHNEAASMLRNPYDRHELVRQDVKQVICSVCDTEQPVAQVCT 82 (226)
Q Consensus 3 ~~~~~~~~~~~~~~gC~HY~r~c~l~~pCC~~~y~Cr~CHde~~~h~~~~~~~H~~~r~~~~~v~Cg~C~~~q~v~~~C~ 82 (226)
++....+|++++++||+||+|+|+||||||++|||||+||||++ +|+++|+++++|+||+|+++|++++.|+
T Consensus 4 ~~~~~~~~~~~~~~gC~HY~r~~~lr~pCC~k~y~Cr~CHde~~--------dH~l~r~~~~~vlCg~C~~~q~~~~~C~ 75 (143)
T 2dkt_A 4 GSSGGVRNLAQGPRGCEHYDRACLLKAPCCDKLYTCRLCHDTNE--------DHQLDRFKVKEVQCINCEKLQHAQQTCE 75 (143)
T ss_dssp CCCCCCCCCCCCSSSCSSCCCSEEEEETTTTEEESSHHHHHHTS--------SSCCCSSSCCCEEESSSCCEECSCSBCS
T ss_pred CCCCcccccccCcCCCcccCCCeeEECCCCCCccchhhhhcccc--------ccccchhccceeeecccCccccccCcCC
Confidence 45556789999999999999999999999999999999999974 6999999999999999999999999999
Q ss_pred CCCCCcceeecCccccccCCCCCCeeccCCCCcceeCCccceeeccccCccccccccCcceeecCCCCC
Q 027217 83 NCGVNMGEYFCDICKFYDDDIEKGQFHCDDCGICRIGGRENYFHCKRCGSCYSTSLRNNHLCIENSMHH 151 (226)
Q Consensus 83 ~Cg~~f~~Y~C~~C~l~dd~~~k~~yHC~~CgiCR~G~~~~~fHC~~C~~C~s~~l~~~H~C~e~~~~~ 151 (226)
+||+.||+|||+|||||| ++|+||||++|||||||+++|||||++||+|||++|+++|+|+|+++++
T Consensus 76 ~Cg~~f~~Y~C~~C~l~d--~~k~~yHC~~CgiCR~G~~~~ffHC~~C~~C~s~~l~~~H~C~e~~~~s 142 (143)
T 2dkt_A 76 DCSTLFGEYYCSICHLFD--KDKRQYHCESCGICRIGPKEDFFHCLKCNLCLTTNLRGKHKCIESGPSS 142 (143)
T ss_dssp SSCCBSCSEECSSSCCEE--CSSSEEEETTTTEEEESCGGGEEEETTTTEEEEGGGSSSSCCSCCCSCC
T ss_pred CCCccceeeEeceeeccc--CCCceecCCCCCceeccCCcCcEECCcCCeeeccccCcCcccCccCccC
Confidence 999999999999999997 4699999999999999999999999999999999999999999999865
No 2
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.46 E-value=2.2e-14 Score=96.28 Aligned_cols=52 Identities=42% Similarity=0.875 Sum_probs=45.8
Q ss_pred CCCCCCccchhhcccCCcceeeeccCCccCHHHHHHHHhcCcCCCCCCCeecc
Q 027217 148 SMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVI 200 (226)
Q Consensus 148 ~~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~ 200 (226)
+.+..||||++.+.++.+.++.++|||.||..|+.+|++. +.+||+||+.+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 3 SGSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKE-GYRCPLCSGPSS 54 (55)
T ss_dssp SCCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHH-TCCCTTSCCSSC
T ss_pred CCCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHc-CCcCCCCCCcCC
Confidence 4567899999998777777889999999999999999985 589999998874
No 3
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.39 E-value=1.9e-13 Score=97.26 Aligned_cols=56 Identities=23% Similarity=0.671 Sum_probs=46.8
Q ss_pred cCCCCCCCccchhhcccCCcceeeeccCCccCHHHHHHHHhcCcCCCCCCCeecccch
Q 027217 146 ENSMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVIDMS 203 (226)
Q Consensus 146 e~~~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~dm~ 203 (226)
+...+..|+||++.+. ....+.+|+|||.||..|+.+|++. +.+||+||+.+.++.
T Consensus 11 ~~~~~~~C~IC~~~~~-~~~~~~~~~C~H~f~~~Ci~~~~~~-~~~CP~Cr~~~~~~~ 66 (74)
T 2ep4_A 11 ELNLHELCAVCLEDFK-PRDELGICPCKHAFHRKCLIKWLEV-RKVCPLCNMPVLQLA 66 (74)
T ss_dssp CCCCSCBCSSSCCBCC-SSSCEEEETTTEEEEHHHHHHHHHH-CSBCTTTCCBCSSCC
T ss_pred cCCCCCCCcCCCcccC-CCCcEEEcCCCCEecHHHHHHHHHc-CCcCCCcCccccccc
Confidence 4455778999999954 4567788999999999999999985 569999999998653
No 4
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.38 E-value=1.6e-13 Score=92.17 Aligned_cols=49 Identities=29% Similarity=0.724 Sum_probs=41.2
Q ss_pred CCCCccchhhcccCCcceeeec-cCCccCHHHHHHHHhcCcCCCCCCCeecc
Q 027217 150 HHHCPICYEYLFDSLRNTTVMK-CGHTMHCECYHEMIKRDKYCCPICSKSVI 200 (226)
Q Consensus 150 ~~~CpICle~lf~s~~~v~~Lp-CGH~~H~~C~~~~l~~~~~~CPiCrksi~ 200 (226)
+..|+||++.+.+ .+.+..|+ |||.||..|+.+|++. +.+||+||+.+.
T Consensus 5 ~~~C~IC~~~~~~-~~~~~~~~~C~H~f~~~Ci~~w~~~-~~~CP~Cr~~~~ 54 (55)
T 1iym_A 5 GVECAVCLAELED-GEEARFLPRCGHGFHAECVDMWLGS-HSTCPLCRLTVV 54 (55)
T ss_dssp SCCCTTTCCCCCT-TSCCEECSSSCCEECTTHHHHTTTT-CCSCSSSCCCSC
T ss_pred CCcCccCCccccC-CCceEECCCCCCcccHHHHHHHHHc-CCcCcCCCCEeE
Confidence 5689999999554 45667786 9999999999999984 789999998764
No 5
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.37 E-value=1.3e-13 Score=98.59 Aligned_cols=53 Identities=26% Similarity=0.548 Sum_probs=44.7
Q ss_pred CCCCCCccchhhcccCCcceeeeccCCccCHHHHHHHHhcCcCCCCCCCeecccc
Q 027217 148 SMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVIDM 202 (226)
Q Consensus 148 ~~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~dm 202 (226)
..+..|+||++.+. ..+.++.|||||.||..|+.+|++. +.+||+||+.+...
T Consensus 21 ~~~~~C~IC~~~~~-~~~~~~~l~C~H~fh~~Ci~~w~~~-~~~CP~Cr~~~~~~ 73 (75)
T 1x4j_A 21 SEQTLCVVCMCDFE-SRQLLRVLPCNHEFHAKCVDKWLKA-NRTCPICRADSGPS 73 (75)
T ss_dssp SSCCEETTTTEECC-BTCEEEEETTTEEEETTHHHHHHHH-CSSCTTTCCCCCCC
T ss_pred CCCCCCeECCcccC-CCCeEEEECCCCHhHHHHHHHHHHc-CCcCcCcCCcCCCC
Confidence 34567999999854 4567889999999999999999985 67999999988754
No 6
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.37 E-value=3.7e-13 Score=98.48 Aligned_cols=49 Identities=22% Similarity=0.539 Sum_probs=39.2
Q ss_pred CCCCccchhhcccCCcceeee-ccCCccCHHHHHHHHhcCcCCCCCCCeecc
Q 027217 150 HHHCPICYEYLFDSLRNTTVM-KCGHTMHCECYHEMIKRDKYCCPICSKSVI 200 (226)
Q Consensus 150 ~~~CpICle~lf~s~~~v~~L-pCGH~~H~~C~~~~l~~~~~~CPiCrksi~ 200 (226)
+..||||++++..+ +.+++| +|||.||..|+++|++. +.+||+||+.+.
T Consensus 26 ~~~C~iC~~~~~~~-~~~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~~~ 75 (81)
T 2ecl_A 26 MDACLRCQAENKQE-DCVVVWGECNHSFHNCCMSLWVKQ-NNRCPLCQQDWV 75 (81)
T ss_dssp TSCCTTHHHHTCTT-TCCEEEETTSCEEEHHHHHHHTTT-CCBCTTTCCBCC
T ss_pred hccCcccccccCCC-ceEEEeCCCCCccChHHHHHHHHh-CCCCCCcCCCcc
Confidence 56788888885554 445455 59999999999999985 679999999875
No 7
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.37 E-value=3e-13 Score=94.95 Aligned_cols=53 Identities=23% Similarity=0.532 Sum_probs=44.4
Q ss_pred CCCCCCCccchhhcccCCcceeeeccCCccCHHHHHHHHhcCcCCCCCCCeeccc
Q 027217 147 NSMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVID 201 (226)
Q Consensus 147 ~~~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~d 201 (226)
...+..|+||++.+. ....++.|+|||.||..|+.+|+.. +.+||+||+.+..
T Consensus 11 ~~~~~~C~IC~~~~~-~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 63 (69)
T 2kiz_A 11 EDTEEKCTICLSILE-EGEDVRRLPCMHLFHQVCVDQWLIT-NKKCPICRVDIEA 63 (69)
T ss_dssp TTCCCSBTTTTBCCC-SSSCEEECTTSCEEEHHHHHHHHHH-CSBCTTTCSBSCS
T ss_pred CCCCCCCeeCCcccc-CCCcEEEeCCCCHHHHHHHHHHHHc-CCCCcCcCccccC
Confidence 445678999999854 4567888999999999999999985 6789999998763
No 8
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.33 E-value=7.9e-13 Score=101.28 Aligned_cols=56 Identities=25% Similarity=0.434 Sum_probs=43.5
Q ss_pred CCCCCCCccchhhcccCC--------------cceeeeccCCccCHHHHHHHHh----cCcCCCCCCCeecccc
Q 027217 147 NSMHHHCPICYEYLFDSL--------------RNTTVMKCGHTMHCECYHEMIK----RDKYCCPICSKSVIDM 202 (226)
Q Consensus 147 ~~~~~~CpICle~lf~s~--------------~~v~~LpCGH~~H~~C~~~~l~----~~~~~CPiCrksi~dm 202 (226)
...+.+|||||++|.+.. ..++.++|||.||..||.+|+. ..+.+||+||+.+...
T Consensus 22 ~~~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~ 95 (114)
T 1v87_A 22 VAPEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK 95 (114)
T ss_dssp SCCSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred CCCCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCC
Confidence 344568999999975432 2344789999999999999995 2467999999988753
No 9
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.32 E-value=7.3e-13 Score=98.67 Aligned_cols=52 Identities=23% Similarity=0.497 Sum_probs=43.6
Q ss_pred CCCCCCccchhhcccCCcceeeeccCCccCHHHHHHHHhcCcCCCCCCCeeccc
Q 027217 148 SMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVID 201 (226)
Q Consensus 148 ~~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~d 201 (226)
..+..|+||++.+.. .+.++.|||||.||..|+.+|+. .+.+||+||+.+..
T Consensus 38 ~~~~~C~IC~~~~~~-~~~~~~l~C~H~Fh~~Ci~~wl~-~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 38 GQEMCCPICCSEYVK-GDVATELPCHHYFHKPCVSIWLQ-KSGTCPVCRCMFPP 89 (91)
T ss_dssp SSCSEETTTTEECCT-TCEEEEETTTEEEEHHHHHHHHT-TTCBCTTTCCBSSC
T ss_pred CCCCCCcccChhhcC-CCcEEecCCCChHHHHHHHHHHH-cCCcCcCcCccCCC
Confidence 345679999998544 56788899999999999999998 46899999998753
No 10
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.30 E-value=9.6e-13 Score=94.41 Aligned_cols=52 Identities=25% Similarity=0.600 Sum_probs=43.9
Q ss_pred CCCCCCccchhhcccCCcceeeeccCCccCHHHHHHHHhcCcCCCCCCCeeccc
Q 027217 148 SMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVID 201 (226)
Q Consensus 148 ~~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~d 201 (226)
..+..|+||++.+. ....+.+|+|||.||..|+.+|++. +.+||+||+.+..
T Consensus 13 ~~~~~C~IC~~~~~-~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 64 (78)
T 2ect_A 13 GSGLECPVCKEDYA-LGESVRQLPCNHLFHDSCIVPWLEQ-HDSCPVCRKSLTG 64 (78)
T ss_dssp SSSCCCTTTTSCCC-TTSCEEECTTSCEEETTTTHHHHTT-TCSCTTTCCCCCC
T ss_pred CCCCCCeeCCcccc-CCCCEEEeCCCCeecHHHHHHHHHc-CCcCcCcCCccCC
Confidence 34568999999854 4567788999999999999999984 6899999999874
No 11
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.27 E-value=1.4e-12 Score=91.44 Aligned_cols=53 Identities=28% Similarity=0.636 Sum_probs=43.7
Q ss_pred CCCCCCccchhhcccC---CcceeeeccCCccCHHHHHHHHhcCcCCCCCCCeeccc
Q 027217 148 SMHHHCPICYEYLFDS---LRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVID 201 (226)
Q Consensus 148 ~~~~~CpICle~lf~s---~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~d 201 (226)
..+..||||++.+.+. .+.++.++|||+||..|+.+|++. +.+||+||+.+..
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 63 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINH 63 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHH-CSBCTTTCCBCCC
T ss_pred CCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHc-CCCCCCCCCccCh
Confidence 4467899999986653 344578999999999999999985 5799999998863
No 12
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.27 E-value=1.5e-12 Score=90.49 Aligned_cols=52 Identities=29% Similarity=0.646 Sum_probs=42.7
Q ss_pred CCCCCCccchhhcccC---CcceeeeccCCccCHHHHHHHHhcCcCCCCCCCeecc
Q 027217 148 SMHHHCPICYEYLFDS---LRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVI 200 (226)
Q Consensus 148 ~~~~~CpICle~lf~s---~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~ 200 (226)
.....||||++.+.+. ...+..++|||.||..|+.+|+.. +.+||+||+.+.
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~ 67 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKIN 67 (69)
T ss_dssp TCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHH-CSSCTTTCCCCC
T ss_pred CCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHc-CCCCCCCCCccC
Confidence 3456799999986653 234578999999999999999985 689999999875
No 13
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.26 E-value=2.2e-12 Score=88.40 Aligned_cols=51 Identities=27% Similarity=0.663 Sum_probs=42.7
Q ss_pred CCCCccchhhcccC---CcceeeeccCCccCHHHHHHHHhcCcCCCCCCCeeccc
Q 027217 150 HHHCPICYEYLFDS---LRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVID 201 (226)
Q Consensus 150 ~~~CpICle~lf~s---~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~d 201 (226)
+..||||++.+.+. .+.+..++|||.||..|+.+|++. +.+||+||+.+..
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 56 (64)
T 2xeu_A 3 MVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINH 56 (64)
T ss_dssp CCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHH-CSBCTTTCCBCTT
T ss_pred CCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHc-CCCCCCCCccCCc
Confidence 56899999986652 344578899999999999999985 6899999998863
No 14
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.25 E-value=4e-12 Score=88.42 Aligned_cols=52 Identities=25% Similarity=0.515 Sum_probs=42.6
Q ss_pred CCCCccchh-hcccCCcceeeeccCCccCHHHHHHHHhcCcCCCCCCCeeccc
Q 027217 150 HHHCPICYE-YLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVID 201 (226)
Q Consensus 150 ~~~CpICle-~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~d 201 (226)
+..||||++ .+.+....+..++|||+|+..|+.+|+..+..+||+||+.+..
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 55 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRK 55 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSS
T ss_pred CCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCcccc
Confidence 467999999 6655444446789999999999999987667889999999863
No 15
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.22 E-value=4.1e-12 Score=88.67 Aligned_cols=50 Identities=26% Similarity=0.641 Sum_probs=42.2
Q ss_pred CCCCCccchhhcccCCcceeeeccCCccCHHHHHHHHhcCcCCCCCCCeecccc
Q 027217 149 MHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVIDM 202 (226)
Q Consensus 149 ~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~dm 202 (226)
.+..||||++.+. +++..++|||.||..|+.+|++. +.+||+||+.+..+
T Consensus 4 ~~~~C~IC~~~~~---~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~ 53 (68)
T 1chc_A 4 VAERCPICLEDPS---NYSMALPCLHAFCYVCITRWIRQ-NPTCPLCKVPVESV 53 (68)
T ss_dssp CCCCCSSCCSCCC---SCEEETTTTEEESTTHHHHHHHH-SCSTTTTCCCCCCE
T ss_pred CCCCCeeCCcccc---CCcEecCCCCeeHHHHHHHHHhC-cCcCcCCChhhHhh
Confidence 3568999999854 35678999999999999999985 68999999998754
No 16
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.19 E-value=1.2e-12 Score=96.08 Aligned_cols=61 Identities=23% Similarity=0.539 Sum_probs=48.2
Q ss_pred CCCCCccchhhcccCCcceeeec--cCCccCHHHHHHHHhcCcCCCCCCCeecccchHHHHHHHH
Q 027217 149 MHHHCPICYEYLFDSLRNTTVMK--CGHTMHCECYHEMIKRDKYCCPICSKSVIDMSRTWKRIDE 211 (226)
Q Consensus 149 ~~~~CpICle~lf~s~~~v~~Lp--CGH~~H~~C~~~~l~~~~~~CPiCrksi~dm~~~~~~lD~ 211 (226)
.+..||||+|.+.. .++.++| |||.|+..|+..++....++||+||+.+......|+++|+
T Consensus 10 ~~~~CpICle~~~~--~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~~~~~~~~ 72 (78)
T 1e4u_A 10 DPVECPLCMEPLEI--DDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPAVYKPLSQ 72 (78)
T ss_dssp CCCBCTTTCCBCCT--TTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSSCCCSCCC
T ss_pred cCCcCCccCccCcc--ccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCchhhccCCH
Confidence 45689999997532 3344554 9999999999999866678999999999987777776654
No 17
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.18 E-value=1.2e-11 Score=89.88 Aligned_cols=52 Identities=29% Similarity=0.702 Sum_probs=43.2
Q ss_pred CCCCCccchhhcccCCcceeeeccCCccCHHHHHHHHhcC--cCCCCCCCeecc
Q 027217 149 MHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRD--KYCCPICSKSVI 200 (226)
Q Consensus 149 ~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~--~~~CPiCrksi~ 200 (226)
....||||++.+.++....+.|+|||+||..|+.+|+... ..+||+||+.+.
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 67 (88)
T 2ct2_A 14 EVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITR 67 (88)
T ss_dssp SCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBC
T ss_pred CCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCccc
Confidence 3567999999976655447788999999999999999853 479999999875
No 18
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.16 E-value=1.9e-11 Score=94.53 Aligned_cols=49 Identities=18% Similarity=0.411 Sum_probs=36.1
Q ss_pred CCCCccchhhcccC---CcceeeeccCCccCHHHHHHHHhcCcCCCCCCCeec
Q 027217 150 HHHCPICYEYLFDS---LRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSV 199 (226)
Q Consensus 150 ~~~CpICle~lf~s---~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi 199 (226)
+..|+||++++.++ ...+..|+|||.||..||++||.. +.+||+||+.+
T Consensus 48 ~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP~Cr~~~ 99 (106)
T 3dpl_R 48 MDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREW 99 (106)
T ss_dssp TSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTT-CSBCSSSCSBC
T ss_pred hCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHc-CCcCcCCCCcc
Confidence 34555565543221 224677899999999999999984 78999999984
No 19
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.14 E-value=2.4e-12 Score=90.48 Aligned_cols=50 Identities=22% Similarity=0.571 Sum_probs=42.0
Q ss_pred CCCCCCccchhhcccCCcceeeeccCCccCHHHHHHHHhcCcCCCCCCCeecccch
Q 027217 148 SMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVIDMS 203 (226)
Q Consensus 148 ~~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~dm~ 203 (226)
.....||||++.+.+ +.|+|||.||..|+.+|+. ...+||+||+.+....
T Consensus 13 ~~~~~C~IC~~~~~~-----~~~~CgH~fc~~Ci~~~~~-~~~~CP~Cr~~~~~~~ 62 (70)
T 2ecn_A 13 TDEEECCICMDGRAD-----LILPCAHSFCQKCIDKWSD-RHRNCPICRLQMTGAN 62 (70)
T ss_dssp CCCCCCSSSCCSCCS-----EEETTTEEECHHHHHHSSC-CCSSCHHHHHCTTCCC
T ss_pred CCCCCCeeCCcCccC-----cccCCCCcccHHHHHHHHH-CcCcCCCcCCcccCCC
Confidence 345689999998443 6799999999999999998 5789999999987653
No 20
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.11 E-value=2.4e-11 Score=85.94 Aligned_cols=49 Identities=16% Similarity=0.428 Sum_probs=40.5
Q ss_pred CCCCCCccchhhcccCCcceeeeccCCccCHHHHHHHHhcCcCCCCCCCeeccc
Q 027217 148 SMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVID 201 (226)
Q Consensus 148 ~~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~d 201 (226)
..+..||||++.+.+ .+.|+|||.||..|+.+|+.. ..+||+||+.+..
T Consensus 13 ~~~~~C~IC~~~~~~----~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 13 LTVPECAICLQTCVH----PVSLPCKHVFCYLCVKGASWL-GKRCALCRQEIPE 61 (71)
T ss_dssp SSCCBCSSSSSBCSS----EEEETTTEEEEHHHHHHCTTC-SSBCSSSCCBCCH
T ss_pred CCCCCCccCCcccCC----CEEccCCCHHHHHHHHHHHHC-CCcCcCcCchhCH
Confidence 345679999998533 467899999999999999984 6899999999863
No 21
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.11 E-value=3.7e-11 Score=85.19 Aligned_cols=49 Identities=33% Similarity=0.578 Sum_probs=40.7
Q ss_pred CCCCCccchhhcccCCcceeeeccCCccCHHHHHHHHhcCcCCCCCCCeeccc
Q 027217 149 MHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVID 201 (226)
Q Consensus 149 ~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~d 201 (226)
.+..||||++.+.+ ++..++|||.||..|+.+|+.. +.+||+||+.+..
T Consensus 14 ~~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~ 62 (72)
T 2djb_A 14 PYILCSICKGYLID---ATTITECLHTFCKSCIVRHFYY-SNRCPKCNIVVHQ 62 (72)
T ss_dssp GGGSCTTTSSCCSS---CEECSSSCCEECHHHHHHHHHH-CSSCTTTCCCCCS
T ss_pred CCCCCCCCChHHHC---cCEECCCCCHHHHHHHHHHHHc-CCcCCCcCcccCc
Confidence 35679999998554 5555599999999999999985 6899999998864
No 22
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.09 E-value=3.9e-11 Score=92.58 Aligned_cols=53 Identities=28% Similarity=0.636 Sum_probs=43.6
Q ss_pred CCCCCCccchhhcccC---CcceeeeccCCccCHHHHHHHHhcCcCCCCCCCeeccc
Q 027217 148 SMHHHCPICYEYLFDS---LRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVID 201 (226)
Q Consensus 148 ~~~~~CpICle~lf~s---~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~d 201 (226)
+.+..||||++.+.+. .+.++.++|||+||..|+.+|++. +.+||+||+.+..
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 60 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINH 60 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTT-CSBCTTTCCBCTT
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHh-CCCCCCCCCcCcc
Confidence 3456899999986553 345588999999999999999984 6799999999863
No 23
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.09 E-value=3.7e-11 Score=86.92 Aligned_cols=48 Identities=25% Similarity=0.494 Sum_probs=40.1
Q ss_pred CCCCCccchhhcccCCcceeeeccCCccCHHHHHHHHhcCcCCCCCCCeeccc
Q 027217 149 MHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVID 201 (226)
Q Consensus 149 ~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~d 201 (226)
....||||++.+.+ + ++++|||+||..|+.+|+.. ..+||+||+.+..
T Consensus 14 ~~~~C~IC~~~~~~---p-~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~ 61 (81)
T 2csy_A 14 IPFRCFICRQAFQN---P-VVTKCRHYFCESCALEHFRA-TPRCYICDQPTGG 61 (81)
T ss_dssp CCSBCSSSCSBCCS---E-EECTTSCEEEHHHHHHHHHH-CSBCSSSCCBCCS
T ss_pred CCCCCcCCCchhcC---e-eEccCCCHhHHHHHHHHHHC-CCcCCCcCccccc
Confidence 35679999998533 3 46899999999999999984 7899999999863
No 24
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.08 E-value=5.2e-11 Score=82.95 Aligned_cols=48 Identities=21% Similarity=0.556 Sum_probs=39.6
Q ss_pred CCCCccchhhcccCCcceeeeccCCccCHHHHHHHHhcCcCCCCCCCeeccc
Q 027217 150 HHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVID 201 (226)
Q Consensus 150 ~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~d 201 (226)
+..||||++.+.+ ++ .++|||.||..|+.+|+.....+||+||+.+..
T Consensus 15 ~~~C~IC~~~~~~---p~-~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (66)
T 2ecy_A 15 KYKCEKCHLVLCS---PK-QTECGHRFCESCMAALLSSSSPKCTACQESIVK 62 (66)
T ss_dssp CEECTTTCCEESS---CC-CCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCT
T ss_pred CCCCCCCChHhcC---ee-ECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCCh
Confidence 4579999998543 33 389999999999999996567899999998864
No 25
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.05 E-value=1.5e-10 Score=92.08 Aligned_cols=47 Identities=34% Similarity=0.836 Sum_probs=39.7
Q ss_pred CCCccchhhcccCCcceeeeccCCccCHHHHHHHHhcCcCCCCCCCeecccc
Q 027217 151 HHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVIDM 202 (226)
Q Consensus 151 ~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~dm 202 (226)
..||||++.+.+ .+.|||||+||..|+.+|+. .+.+||+||+.+...
T Consensus 54 ~~C~iC~~~~~~----~~~~~CgH~fc~~Ci~~~~~-~~~~CP~Cr~~~~~~ 100 (138)
T 4ayc_A 54 LQCIICSEYFIE----AVTLNCAHSFCSYCINEWMK-RKIECPICRKDIKSK 100 (138)
T ss_dssp SBCTTTCSBCSS----EEEETTSCEEEHHHHHHHTT-TCSBCTTTCCBCCCE
T ss_pred CCCcccCcccCC----ceECCCCCCccHHHHHHHHH-cCCcCCCCCCcCCCC
Confidence 469999998543 45689999999999999998 478999999998643
No 26
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.04 E-value=9.5e-11 Score=91.25 Aligned_cols=62 Identities=18% Similarity=0.482 Sum_probs=46.2
Q ss_pred CCCCccchhhcccCCcceeeeccCCccCHHHHHHHHhcCcCCCCCCCeecccc--hHHHHHHHHHHHh
Q 027217 150 HHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVIDM--SRTWKRIDEELQM 215 (226)
Q Consensus 150 ~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~dm--~~~~~~lD~~i~~ 215 (226)
+..||||++.+.+ .+.++|||+|+..|+..|+.....+||+||+.+... -.....|+..|+.
T Consensus 52 ~~~C~IC~~~~~~----p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~ 115 (124)
T 3fl2_A 52 TFQCICCQELVFR----PITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGRSYAMQVNQPLQTVLNQ 115 (124)
T ss_dssp HTBCTTTSSBCSS----EEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCCCHHHHHHHHH
T ss_pred CCCCCcCChHHcC----cEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCCCCCCCCCHHHHHHHHH
Confidence 3579999998543 345799999999999999986667999999999651 1133455555543
No 27
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.03 E-value=3.3e-10 Score=81.05 Aligned_cols=66 Identities=17% Similarity=0.276 Sum_probs=47.6
Q ss_pred CCCCCccchhhcccCCcceeeeccCCccCHHHHHHHHhcCcCCCCCCCeecccch-----HHHHHHHHHHHhCCC
Q 027217 149 MHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVIDMS-----RTWKRIDEELQMNSS 218 (226)
Q Consensus 149 ~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~dm~-----~~~~~lD~~i~~~pm 218 (226)
.+..||||++.|.+ + +.++|||+|++.|+.+|+..++.+||+|++.+.... ..-+.+++.+++..+
T Consensus 7 ~~~~C~IC~~~~~~---P-v~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~l~~n~~l~~~i~~~~~~~~~ 77 (78)
T 1t1h_A 7 EYFRCPISLELMKD---P-VIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVLKSLIALWCESNGI 77 (78)
T ss_dssp SSSSCTTTSCCCSS---E-EEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCEECTTTHHHHHHHHHHSCC
T ss_pred ccCCCCCccccccC---C-EEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChhhCccCHHHHHHHHHHHHHcCC
Confidence 45689999997543 3 457999999999999999865789999999985311 123445555555443
No 28
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.03 E-value=4.7e-11 Score=85.35 Aligned_cols=50 Identities=24% Similarity=0.620 Sum_probs=39.9
Q ss_pred CCCCccchhhcccCCcceeeec-cCCccCHHHHHHHHhcC-cCCCCCCCeecccch
Q 027217 150 HHHCPICYEYLFDSLRNTTVMK-CGHTMHCECYHEMIKRD-KYCCPICSKSVIDMS 203 (226)
Q Consensus 150 ~~~CpICle~lf~s~~~v~~Lp-CGH~~H~~C~~~~l~~~-~~~CPiCrksi~dm~ 203 (226)
+..||||++.+.+ + +.|+ |||+||..|+.+|+... ..+||+||+.+....
T Consensus 15 ~~~C~IC~~~~~~---p-~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~ 66 (74)
T 2yur_A 15 ELLCLICKDIMTD---A-VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPD 66 (74)
T ss_dssp GGSCSSSCCCCTT---C-EECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTT
T ss_pred CCCCcCCChHHhC---C-eEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCcc
Confidence 5679999998543 3 4588 99999999999999853 368999999876543
No 29
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.03 E-value=8.8e-11 Score=88.72 Aligned_cols=48 Identities=23% Similarity=0.518 Sum_probs=40.4
Q ss_pred CCCCccchhhcccCCcceeeeccCCccCHHHHHHHHhcCcCCCCCCCeecc
Q 027217 150 HHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVI 200 (226)
Q Consensus 150 ~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~ 200 (226)
+..||||++.+.+ ++..++|||.||..|+.+|+.....+||+||+.+.
T Consensus 22 ~~~C~IC~~~~~~---p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~ 69 (100)
T 3lrq_A 22 VFRCFICMEKLRD---ARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQ 69 (100)
T ss_dssp HTBCTTTCSBCSS---EEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCccCCccccC---ccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCC
Confidence 4579999998543 55559999999999999999865479999999985
No 30
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.01 E-value=2.1e-10 Score=80.77 Aligned_cols=49 Identities=29% Similarity=0.735 Sum_probs=39.6
Q ss_pred CCCCCCccchhhcccCCcceeeeccCCccCHHHHHHHHhc--CcCCCCCCCeecc
Q 027217 148 SMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKR--DKYCCPICSKSVI 200 (226)
Q Consensus 148 ~~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~--~~~~CPiCrksi~ 200 (226)
..+..||||++.+. ..+.|+|||.||..|+.+|+.. ...+||+||+.+.
T Consensus 18 ~~~~~C~IC~~~~~----~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 68 (73)
T 2ysl_A 18 QEEVICPICLDILQ----KPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVR 68 (73)
T ss_dssp CCCCBCTTTCSBCS----SEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCC
T ss_pred ccCCEeccCCcccC----CeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCC
Confidence 34568999999744 2456799999999999999962 4679999999875
No 31
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.01 E-value=1.3e-10 Score=85.62 Aligned_cols=51 Identities=29% Similarity=0.610 Sum_probs=40.6
Q ss_pred CCCCCCccchhhcccCCcceeeeccC-----CccCHHHHHHHHhcC-cCCCCCCCeecc
Q 027217 148 SMHHHCPICYEYLFDSLRNTTVMKCG-----HTMHCECYHEMIKRD-KYCCPICSKSVI 200 (226)
Q Consensus 148 ~~~~~CpICle~lf~s~~~v~~LpCG-----H~~H~~C~~~~l~~~-~~~CPiCrksi~ 200 (226)
+.+..|+||++++ +..+++ ++||+ |.||..|+++||... ..+|||||..+.
T Consensus 13 ~~~~~C~IC~~~~-~~~~~l-~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~ 69 (80)
T 2d8s_A 13 SSQDICRICHCEG-DDESPL-ITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFI 69 (80)
T ss_dssp TTSCCCSSSCCCC-CSSSCE-ECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCC
T ss_pred CCCCCCeEcCccc-cCCCee-EeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeee
Confidence 4456899999984 434444 68996 999999999999853 369999999875
No 32
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=98.98 E-value=1.9e-10 Score=86.13 Aligned_cols=48 Identities=27% Similarity=0.676 Sum_probs=39.9
Q ss_pred CCCCccchhhcccCCcceeeeccCCccCHHHHHHHHhcCcCCCCCCCeeccc
Q 027217 150 HHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVID 201 (226)
Q Consensus 150 ~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~d 201 (226)
+..||||++.+.+ ++..++|||+||..|+.+|+. .+.+||+||+.+..
T Consensus 22 ~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~-~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 22 LLRCGICFEYFNI---AMIIPQCSHNYCSLCIRKFLS-YKTQCPTCCVTVTE 69 (99)
T ss_dssp HTBCTTTCSBCSS---EEECTTTCCEEEHHHHHHHHT-TCCBCTTTCCBCCG
T ss_pred CCCcccCChhhCC---cCEECCCCCHhhHHHHHHHHH-CCCCCCCCCCcCCh
Confidence 4579999998543 555559999999999999998 46899999998873
No 33
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=98.97 E-value=2.6e-10 Score=92.83 Aligned_cols=49 Identities=27% Similarity=0.702 Sum_probs=41.0
Q ss_pred CCCCccchhhcccCCcceeeeccCCccCHHHHHHHHhcCcCCCCCCCeeccc
Q 027217 150 HHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVID 201 (226)
Q Consensus 150 ~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~d 201 (226)
+..||||++.+.+ ++..++|||+||..|+..|+.....+||+||+.+..
T Consensus 54 ~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 54 ELMCPICLDMLKN---TMTTKECLHRFCADCIITALRSGNKECPTCRKKLVS 102 (165)
T ss_dssp HHBCTTTSSBCSS---EEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred CCCCcccChHhhC---cCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence 3479999998543 566669999999999999998657899999999853
No 34
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=98.96 E-value=8e-11 Score=92.87 Aligned_cols=50 Identities=22% Similarity=0.555 Sum_probs=0.8
Q ss_pred CCCCCccchhhcccC--------------CcceeeeccCCccCHHHHHHHHhcCcCCCCCCCeec
Q 027217 149 MHHHCPICYEYLFDS--------------LRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSV 199 (226)
Q Consensus 149 ~~~~CpICle~lf~s--------------~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi 199 (226)
.+.+|+||++.|.+. ...+..++|||.||..|+++||.. +.+||+||+.+
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~-~~~CP~Cr~~~ 110 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREW 110 (117)
T ss_dssp CC---------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHc-CCcCCCCCCee
Confidence 346799999886431 113344699999999999999985 78999999874
No 35
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.96 E-value=3.4e-10 Score=76.18 Aligned_cols=43 Identities=28% Similarity=0.892 Sum_probs=34.9
Q ss_pred CCCCCccchhhcccCCcceeeeccCCccCHHHHHHHHhc--CcCCCCCC
Q 027217 149 MHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKR--DKYCCPIC 195 (226)
Q Consensus 149 ~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~--~~~~CPiC 195 (226)
.+..||||++.+.+ + +.|+|||+||..|+.+|+.. ...+||+|
T Consensus 14 ~~~~C~IC~~~~~~---p-~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 14 VEASCSVCLEYLKE---P-VIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCBCSSSCCBCSS---C-CCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred cCCCCccCCcccCc---c-EeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 35679999998543 2 45899999999999999653 57899998
No 36
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.95 E-value=4.3e-10 Score=86.64 Aligned_cols=53 Identities=28% Similarity=0.636 Sum_probs=43.3
Q ss_pred CCCCCCccchhhcccC---CcceeeeccCCccCHHHHHHHHhcCcCCCCCCCeeccc
Q 027217 148 SMHHHCPICYEYLFDS---LRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVID 201 (226)
Q Consensus 148 ~~~~~CpICle~lf~s---~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~d 201 (226)
.....||||++.+.+. ...++.++|||.||..|+++|+.. +.+||+||+++..
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 125 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINH 125 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHH-CSBCTTTCCBCCG
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHc-CCCCCCCCCcCCh
Confidence 4567899999986542 234478899999999999999985 6799999999864
No 37
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.95 E-value=2.5e-10 Score=87.79 Aligned_cols=65 Identities=22% Similarity=0.314 Sum_probs=48.6
Q ss_pred CCCCccchhhcccCCcceeeeccCCccCHHHHHHHHhcCcCCCCCCCeecccc--hHHHHHHHHHHHhCCC
Q 027217 150 HHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVIDM--SRTWKRIDEELQMNSS 218 (226)
Q Consensus 150 ~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~dm--~~~~~~lD~~i~~~pm 218 (226)
+..||||++.+.+ ++ .++|||+|+..|+.+|+.....+||+||+.+..- ....+.+.++|++.++
T Consensus 23 ~~~C~IC~~~~~~---p~-~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~l~~~i~~l~v 89 (116)
T 1rmd_A 23 SISCQICEHILAD---PV-ETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLNILNSLMV 89 (116)
T ss_dssp HTBCTTTCSBCSS---EE-ECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCBCCCHHHHHHHHHCEE
T ss_pred CCCCCCCCcHhcC---cE-EcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhhccccHHHHHHHHHHhcC
Confidence 4579999998543 34 4899999999999999986567999999998742 2234566666665543
No 38
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.94 E-value=5.6e-10 Score=76.83 Aligned_cols=43 Identities=28% Similarity=0.807 Sum_probs=35.0
Q ss_pred CCCCCccchhhcccCCcceeeeccCCccCHHHHHHHHhc--CcCCCCCC
Q 027217 149 MHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKR--DKYCCPIC 195 (226)
Q Consensus 149 ~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~--~~~~CPiC 195 (226)
.+..||||++.+.+ .++|+|||+||..|+.+|++. ...+||+|
T Consensus 19 ~~~~C~IC~~~~~~----p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 19 EEVICPICLDILQK----PVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCBCTTTCSBCSS----CEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred cCCCCCcCCchhCC----eEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 35679999998543 345799999999999999974 46789998
No 39
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=98.93 E-value=4.5e-10 Score=85.43 Aligned_cols=49 Identities=31% Similarity=0.709 Sum_probs=40.8
Q ss_pred CCCCCccchhhcccCCcceeeeccCCccCHHHHHHHHhcCcCCCCCCCeeccc
Q 027217 149 MHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVID 201 (226)
Q Consensus 149 ~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~d 201 (226)
.+..||||++.+.+ ++..++|||+||..|+.+|+.. +.+||+||+.+..
T Consensus 14 ~~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~ 62 (108)
T 2ckl_A 14 PHLMCVLCGGYFID---ATTIIECLHSFCKTCIVRYLET-SKYCPICDVQVHK 62 (108)
T ss_dssp GGTBCTTTSSBCSS---EEEETTTCCEEEHHHHHHHHTS-CSBCTTTCCBSCS
T ss_pred CcCCCccCChHHhC---cCEeCCCCChhhHHHHHHHHHh-CCcCcCCCccccc
Confidence 35679999998543 5555699999999999999984 6899999999874
No 40
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.92 E-value=7.3e-10 Score=79.40 Aligned_cols=48 Identities=27% Similarity=0.605 Sum_probs=39.7
Q ss_pred CCCCCccchhhcccCCcceeeeccCCccCHHHHHHHHhcC-----cCCCCCCCeecc
Q 027217 149 MHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRD-----KYCCPICSKSVI 200 (226)
Q Consensus 149 ~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~-----~~~CPiCrksi~ 200 (226)
.+..||||++.+.+ + ..++|||.|+..|+.+|+... ..+||+||+.+.
T Consensus 18 ~~~~C~IC~~~~~~---p-~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~ 70 (85)
T 2ecw_A 18 EEVTCPICLELLKE---P-VSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYP 70 (85)
T ss_dssp TTTSCTTTCSCCSS---C-EECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCC
T ss_pred cCCCCcCCChhhCc---c-eeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCC
Confidence 35679999998543 3 368999999999999999852 679999999876
No 41
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=98.91 E-value=4.9e-10 Score=82.50 Aligned_cols=48 Identities=27% Similarity=0.663 Sum_probs=38.7
Q ss_pred CCCCCccchhhcccCCcceeeec-cCCccCHHHHHHHHhc-CcCCCCCCCeecc
Q 027217 149 MHHHCPICYEYLFDSLRNTTVMK-CGHTMHCECYHEMIKR-DKYCCPICSKSVI 200 (226)
Q Consensus 149 ~~~~CpICle~lf~s~~~v~~Lp-CGH~~H~~C~~~~l~~-~~~~CPiCrksi~ 200 (226)
.+..||||++.|.+ + +.|+ |||+|+..|+.+|+.. ...+||+||+.+.
T Consensus 12 ~~~~C~IC~~~~~~---p-~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 12 DELLCLICKDIMTD---A-VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp TTTEETTTTEECSS---C-EECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred cCCCCCCCChhhcC---c-eECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 35679999997543 3 4688 9999999999999964 3479999999973
No 42
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.91 E-value=3.2e-10 Score=87.76 Aligned_cols=64 Identities=20% Similarity=0.384 Sum_probs=47.7
Q ss_pred CCCCccchhhcccCCcceeeeccCCccCHHHHHHHHhcCcCCCCCCCeecccchH-HHHHHHHHHHhCC
Q 027217 150 HHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVIDMSR-TWKRIDEELQMNS 217 (226)
Q Consensus 150 ~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~dm~~-~~~~lD~~i~~~p 217 (226)
+..||||++.+.+ + +.++|||+|+..|+.+|+.....+||+||+.+...+. .-..+.++|.+.+
T Consensus 18 ~~~C~IC~~~~~~---p-~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~i~~l~ 82 (118)
T 3hct_A 18 KYECPICLMALRE---A-VQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSLM 82 (118)
T ss_dssp GGBCTTTCSBCSS---E-EECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHTSE
T ss_pred CCCCCcCChhhcC---e-EECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHHhcccCHHHHHHHccce
Confidence 4579999998543 3 4579999999999999998655699999999875321 2235666666544
No 43
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=98.90 E-value=1.8e-10 Score=82.18 Aligned_cols=48 Identities=33% Similarity=0.706 Sum_probs=39.2
Q ss_pred CCCCccchhhcccCCcceeeeccCCccCHHHHHHHHhcC------cCCCCCCCeeccc
Q 027217 150 HHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRD------KYCCPICSKSVID 201 (226)
Q Consensus 150 ~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~------~~~CPiCrksi~d 201 (226)
+..||||++.+.+ + +.|+|||.|+..|+.+|+... ..+||+||+.+..
T Consensus 12 ~~~C~IC~~~~~~---p-~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 12 EVTCPICLELLTE---P-LSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp CCEETTTTEECSS---C-CCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred CCCCcCCCcccCC---e-eECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence 5679999998433 3 358999999999999999752 6789999999863
No 44
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.87 E-value=2.8e-10 Score=87.35 Aligned_cols=47 Identities=30% Similarity=0.902 Sum_probs=39.7
Q ss_pred CCCCccchhhcccCCcceeeeccCCccCHHHHHHHHhcCcCCCCCCCeecc
Q 027217 150 HHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVI 200 (226)
Q Consensus 150 ~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~ 200 (226)
+..||||++.+.+ .+.|+|||+|+..|+.+|+..+..+||+||+.+.
T Consensus 15 ~~~C~iC~~~~~~----p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 61 (115)
T 3l11_A 15 ECQCGICMEILVE----PVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVS 61 (115)
T ss_dssp HHBCTTTCSBCSS----CEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCH
T ss_pred CCCCccCCcccCc----eeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccC
Confidence 4579999998553 3457999999999999999766789999999985
No 45
>2k2d_A Ring finger and CHY zinc finger domain- containing protein 1; zinc-binding protein, cytoplasm, metal-binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=98.86 E-value=2.6e-10 Score=84.40 Aligned_cols=29 Identities=24% Similarity=0.459 Sum_probs=0.0
Q ss_pred CCCCCeecccchHHHHHHHHHHHhCCCCC
Q 027217 192 CPICSKSVIDMSRTWKRIDEELQMNSSIF 220 (226)
Q Consensus 192 CPiCrksi~dm~~~~~~lD~~i~~~pm~~ 220 (226)
||+|+||+.||+.+|++||++||++|||.
T Consensus 1 ~~~c~ks~~dm~~~~~~lD~~ia~~pmP~ 29 (79)
T 2k2d_A 1 GSHMMHSALDMTRYWRQLDDEVAQTPMPS 29 (79)
T ss_dssp -----------------------------
T ss_pred CCcccccHHHHHHHHHHHHHHHHhCCCCH
Confidence 79999999999999999999999999963
No 46
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.85 E-value=4.1e-09 Score=79.72 Aligned_cols=47 Identities=26% Similarity=0.705 Sum_probs=38.0
Q ss_pred CCCCccchhhcccCCcceeeeccCCccCHHHHHHHHhcC--cCCCCCCCeecc
Q 027217 150 HHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRD--KYCCPICSKSVI 200 (226)
Q Consensus 150 ~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~--~~~CPiCrksi~ 200 (226)
...||||++.+.+ + ..++|||.|+..|+.+|+... ..+||+||+.+.
T Consensus 21 ~~~C~IC~~~~~~---p-~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 69 (112)
T 1jm7_A 21 ILECPICLELIKE---P-VSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDIT 69 (112)
T ss_dssp HTSCSSSCCCCSS---C-CBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCC
T ss_pred CCCCcccChhhcC---e-EECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCC
Confidence 4579999997533 3 348999999999999999843 258999999875
No 47
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.85 E-value=1.3e-09 Score=78.13 Aligned_cols=49 Identities=31% Similarity=0.706 Sum_probs=40.0
Q ss_pred CCCCCccchhhcccCCcceeeeccCCccCHHHHHHHHhc-----CcCCCCCCCeeccc
Q 027217 149 MHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKR-----DKYCCPICSKSVID 201 (226)
Q Consensus 149 ~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~-----~~~~CPiCrksi~d 201 (226)
....||||++.+.+ ...|+|||.|+..|+.+|+.. ...+||+||+.+..
T Consensus 18 ~~~~C~IC~~~~~~----p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecv_A 18 EEVTCPICLELLTQ----PLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQP 71 (85)
T ss_dssp CCCCCTTTCSCCSS----CBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred CCCCCCCCCcccCC----ceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence 35689999998543 345799999999999999975 26899999998873
No 48
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.79 E-value=2.3e-09 Score=86.95 Aligned_cols=48 Identities=21% Similarity=0.622 Sum_probs=40.1
Q ss_pred CCCCccchhhcccCCcceeeeccCCccCHHHHHHHHhcCcCCCCCCCeeccc
Q 027217 150 HHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVID 201 (226)
Q Consensus 150 ~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~d 201 (226)
+..||||++.+.+ ++ .++|||+|+..|+.+|+.....+||+||+.+..
T Consensus 78 ~~~C~IC~~~~~~---pv-~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 125 (150)
T 1z6u_A 78 SFMCVCCQELVYQ---PV-TTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQ 125 (150)
T ss_dssp HTBCTTTSSBCSS---EE-ECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred CCEeecCChhhcC---CE-EcCCCCchhHHHHHHHHHhCCCcCCCCCccCCC
Confidence 4579999997543 33 489999999999999998666799999999874
No 49
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.68 E-value=1e-08 Score=71.79 Aligned_cols=51 Identities=24% Similarity=0.484 Sum_probs=40.6
Q ss_pred CCCCCCCccchhhcccCCcceeee--ccCCc-cCHHHHHHHHhcCcCCCCCCCeecccc
Q 027217 147 NSMHHHCPICYEYLFDSLRNTTVM--KCGHT-MHCECYHEMIKRDKYCCPICSKSVIDM 202 (226)
Q Consensus 147 ~~~~~~CpICle~lf~s~~~v~~L--pCGH~-~H~~C~~~~l~~~~~~CPiCrksi~dm 202 (226)
...+..|+||++... .+.++ ||||. |-..|+..|+. .+.+||+||+.|.+.
T Consensus 5 ~~~~~~C~IC~~~~~----~~~~~~~pCgH~~~C~~C~~~~~~-~~~~CPiCR~~i~~~ 58 (64)
T 2vje_A 5 LNAIEPCVICQGRPK----NGCIVHGKTGHLMACFTCAKKLKK-RNKPCPVCRQPIQMI 58 (64)
T ss_dssp CGGGSCCTTTSSSCS----CEEEEETTEEEEEECHHHHHHHHH-TTCCCTTTCCCCCEE
T ss_pred CCCcCCCCcCCCCCC----CEEEECCCCCChhhHHHHHHHHHH-cCCcCCCcCcchhce
Confidence 445678999999732 33455 99999 78999999997 467999999998754
No 50
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.64 E-value=1.4e-08 Score=70.84 Aligned_cols=50 Identities=24% Similarity=0.580 Sum_probs=39.7
Q ss_pred CCCCCCccchhhcccCCcceeee--ccCCc-cCHHHHHHHHhcCcCCCCCCCeecccc
Q 027217 148 SMHHHCPICYEYLFDSLRNTTVM--KCGHT-MHCECYHEMIKRDKYCCPICSKSVIDM 202 (226)
Q Consensus 148 ~~~~~CpICle~lf~s~~~v~~L--pCGH~-~H~~C~~~~l~~~~~~CPiCrksi~dm 202 (226)
.....|+||++...+ ..++ ||||. |-..|...|.+. +.+||+||+.|.+.
T Consensus 5 ~~~~~C~IC~~~~~~----~~~~~~pCgH~~~C~~C~~~~~~~-~~~CPiCR~~i~~~ 57 (63)
T 2vje_B 5 NLLKPCSLCEKRPRD----GNIIHGRTGHLVTCFHCARRLKKA-GASCPICKKEIQLV 57 (63)
T ss_dssp GGGSBCTTTSSSBSC----EEEEETTEEEEEECHHHHHHHHHT-TCBCTTTCCBCCEE
T ss_pred CcCCCCcccCCcCCC----eEEEecCCCCHhHHHHHHHHHHHh-CCcCCCcCchhhce
Confidence 346789999997332 3344 99998 999999999874 57999999998754
No 51
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.61 E-value=3.6e-09 Score=85.09 Aligned_cols=47 Identities=19% Similarity=0.446 Sum_probs=38.8
Q ss_pred CCCCCccchhhcccCCcceeeeccCCccCHHHHHHHHhcCcCCCCCCCeec
Q 027217 149 MHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSV 199 (226)
Q Consensus 149 ~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi 199 (226)
.+..||||++.|.+ + +.++|||.|++.|+.+|+.....+||+||+.+
T Consensus 30 ~~~~C~IC~~~~~~---p-v~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~ 76 (141)
T 3knv_A 30 AKYLCSACRNVLRR---P-FQAQCGHRYCSFCLASILSSGPQNCAACVHEG 76 (141)
T ss_dssp GGGBCTTTCSBCSS---E-EECTTSCEEEHHHHHHHGGGSCEECHHHHHTT
T ss_pred cCcCCCCCChhhcC---c-EECCCCCccCHHHHHHHHhcCCCCCCCCCCcc
Confidence 34579999998554 4 44799999999999999986666999999964
No 52
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.59 E-value=1.3e-08 Score=82.91 Aligned_cols=64 Identities=20% Similarity=0.384 Sum_probs=46.4
Q ss_pred CCCCccchhhcccCCcceeeeccCCccCHHHHHHHHhcCcCCCCCCCeecccchH-HHHHHHHHHHhCC
Q 027217 150 HHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVIDMSR-TWKRIDEELQMNS 217 (226)
Q Consensus 150 ~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~dm~~-~~~~lD~~i~~~p 217 (226)
+..||||++.|.+ ++ .++|||+|.+.|+.+|+..+..+||+||+.+..-.. .-..+.++|.+.+
T Consensus 18 ~~~C~IC~~~~~~---pv-~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~i~~l~ 82 (170)
T 3hcs_A 18 KYECPICLMALRE---AV-QTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSLM 82 (170)
T ss_dssp GGBCTTTCSBCSS---EE-ECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHTSE
T ss_pred CCCCCCCChhhcC---cE-ECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchhhhhhhHHHHHHHhhcc
Confidence 4579999998554 44 489999999999999998655699999999875211 1134555555543
No 53
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.58 E-value=7.2e-09 Score=70.46 Aligned_cols=45 Identities=22% Similarity=0.450 Sum_probs=36.3
Q ss_pred CCCCCCccchhhcccCCcceeeeccCCccCHHHHHHHHhcCcCCCCCCCeecc
Q 027217 148 SMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVI 200 (226)
Q Consensus 148 ~~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~ 200 (226)
..+..|+||++.+.+ .+.|+|||+|+..|+.+| ..+||+||+.+.
T Consensus 4 ~~~~~C~IC~~~~~~----p~~l~CgH~fC~~Ci~~~----~~~CP~Cr~~~~ 48 (56)
T 1bor_A 4 FQFLRCQQCQAEAKC----PKLLPCLHTLCSGCLEAS----GMQCPICQAPWP 48 (56)
T ss_dssp CCCSSCSSSCSSCBC----CSCSTTSCCSBTTTCSSS----SSSCSSCCSSSS
T ss_pred ccCCCceEeCCccCC----eEEcCCCCcccHHHHccC----CCCCCcCCcEee
Confidence 445679999998543 357899999999999773 579999999875
No 54
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.55 E-value=8.4e-09 Score=73.92 Aligned_cols=44 Identities=23% Similarity=0.582 Sum_probs=36.8
Q ss_pred CCCCccchhhcccCCcceeeeccCCc-cCHHHHHHHHhcCcCCCCCCCeecccc
Q 027217 150 HHHCPICYEYLFDSLRNTTVMKCGHT-MHCECYHEMIKRDKYCCPICSKSVIDM 202 (226)
Q Consensus 150 ~~~CpICle~lf~s~~~v~~LpCGH~-~H~~C~~~~l~~~~~~CPiCrksi~dm 202 (226)
+..|+||++.+. .+..|||||. |...|+..| .+||+||+.+...
T Consensus 24 ~~~C~iC~~~~~----~~~~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~~ 68 (74)
T 4ic3_A 24 EKLCKICMDRNI----AIVFVPCGHLVTCKQCAEAV-----DKCPMCYTVITFK 68 (74)
T ss_dssp HTBCTTTSSSBC----CEEEETTCCBCCCHHHHTTC-----SBCTTTCCBCSEE
T ss_pred CCCCCCCCCCCC----CEEEcCCCChhHHHHhhhcC-----ccCCCcCcCccCc
Confidence 467999999743 3567899999 999999887 6999999998753
No 55
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.55 E-value=1.2e-08 Score=78.79 Aligned_cols=45 Identities=22% Similarity=0.552 Sum_probs=37.0
Q ss_pred CCCCccchhhcccCCcceeeeccCCccCHHHHHHHHhcCcCCCCCCCeecc
Q 027217 150 HHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVI 200 (226)
Q Consensus 150 ~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~ 200 (226)
+..||||++.+.+ ++...+|||+|+..|+..|+. .+||+||+.+.
T Consensus 22 ~~~C~IC~~~~~~---pv~~~~CgH~fC~~Ci~~~~~---~~CP~Cr~~~~ 66 (117)
T 1jm7_B 22 LLRCSRCTNILRE---PVCLGGCEHIFCSNCVSDCIG---TGCPVCYTPAW 66 (117)
T ss_dssp TTSCSSSCSCCSS---CBCCCSSSCCBCTTTGGGGTT---TBCSSSCCBCS
T ss_pred CCCCCCCChHhhC---ccEeCCCCCHHHHHHHHHHhc---CCCcCCCCcCc
Confidence 5679999998543 444339999999999999985 78999999885
No 56
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.50 E-value=7.3e-08 Score=89.67 Aligned_cols=49 Identities=24% Similarity=0.567 Sum_probs=41.2
Q ss_pred CCCCCccchhhcccCCcceeeeccCCccCHHHHHHHHhcCcCCCCCCCeeccc
Q 027217 149 MHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVID 201 (226)
Q Consensus 149 ~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~d 201 (226)
....|+||++.+. .++.+||||.||..|+.+|+.....+||+||+.+..
T Consensus 331 ~~~~C~ICle~~~----~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~ 379 (389)
T 2y1n_A 331 TFQLCKICAENDK----DVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKG 379 (389)
T ss_dssp SSSBCTTTSSSBC----CEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCE
T ss_pred CCCCCCccCcCCC----CeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCC
Confidence 3468999999842 456799999999999999998557899999998874
No 57
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.49 E-value=8e-08 Score=70.02 Aligned_cols=48 Identities=25% Similarity=0.585 Sum_probs=37.9
Q ss_pred CCCCccchhhcccCCcceeeeccCCccCHHHHHHHHhcC-cCCCCCCCeecc
Q 027217 150 HHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRD-KYCCPICSKSVI 200 (226)
Q Consensus 150 ~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~-~~~CPiCrksi~ 200 (226)
..+|+||.+.+.. ...-..|||.||..||.+||+.. +.+||+|++...
T Consensus 15 i~~C~IC~~~i~~---g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~ 63 (74)
T 2ct0_A 15 VKICNICHSLLIQ---GQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 63 (74)
T ss_dssp SCBCSSSCCBCSS---SEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCC
T ss_pred CCcCcchhhHccc---CCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCC
Confidence 4689999998653 23344899999999999999853 278999997764
No 58
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.41 E-value=2.8e-07 Score=68.33 Aligned_cols=49 Identities=20% Similarity=0.518 Sum_probs=37.2
Q ss_pred CCCCCccchhhcccCCcceeeeccCCccCHHHHHHHHhc-------CcCCCCC--CCee
Q 027217 149 MHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKR-------DKYCCPI--CSKS 198 (226)
Q Consensus 149 ~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~-------~~~~CPi--Crks 198 (226)
....||||+++ +.....+..++|||.|.+.|+.+|+.. ...+||. |+..
T Consensus 4 ~~~~C~IC~~~-~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGE-YPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCC-CBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCcc-cccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 35679999998 443333333479999999999999863 1368999 9998
No 59
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.36 E-value=2e-07 Score=68.61 Aligned_cols=47 Identities=11% Similarity=0.091 Sum_probs=39.5
Q ss_pred CCCCCccchhhcccCCcceeeeccCCccCHHHHHHHHhcCcCCCCCCCeecc
Q 027217 149 MHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVI 200 (226)
Q Consensus 149 ~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~ 200 (226)
.+-.||||++.|.+ +| +++|||+|-+.||.+|+.. +.+||+|++.+.
T Consensus 13 ~~~~CpI~~~~m~d---PV-~~~cGhtf~r~~I~~~l~~-~~~cP~~~~~l~ 59 (85)
T 2kr4_A 13 DEFRDPLMDTLMTD---PV-RLPSGTVMDRSIILRHLLN-SPTDPFNRQMLT 59 (85)
T ss_dssp TTTBCTTTCSBCSS---EE-ECTTSCEEEHHHHHHHHHH-CSBCTTTCCBCC
T ss_pred hheECcccCchhcC---Ce-ECCCCCEECHHHHHHHHhc-CCCCCCCcCCCC
Confidence 35679999997544 44 5789999999999999984 789999999875
No 60
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.35 E-value=1.9e-07 Score=66.79 Aligned_cols=43 Identities=23% Similarity=0.581 Sum_probs=34.8
Q ss_pred CCCCccchhhcccCCcceeeeccCCc-cCHHHHHHHHhcCcCCCCCCCeeccc
Q 027217 150 HHHCPICYEYLFDSLRNTTVMKCGHT-MHCECYHEMIKRDKYCCPICSKSVID 201 (226)
Q Consensus 150 ~~~CpICle~lf~s~~~v~~LpCGH~-~H~~C~~~~l~~~~~~CPiCrksi~d 201 (226)
+..|+||++.+. .++.|||||. |...|+.. ..+||+||+.+..
T Consensus 25 ~~~C~IC~~~~~----~~~~~pCgH~~~C~~C~~~-----~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 25 EKLCKICMDRNI----AIVFVPCGHLVTCKQCAEA-----VDKCPMCYTVITF 68 (75)
T ss_dssp HHSCSSSCSSCC----CBCCSSSCCCCBCHHHHHH-----CSBCTTTCCBCCC
T ss_pred CCCCCcCCCCCC----CEEEecCCCHHHHHHHhhC-----CCCCccCCceecC
Confidence 457999999733 3557899999 99999953 3689999999875
No 61
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.34 E-value=1.1e-07 Score=67.44 Aligned_cols=47 Identities=23% Similarity=0.485 Sum_probs=38.2
Q ss_pred CCCCCCccchhhcccCCcceeeeccCCc-cCHHHHHHHHhcCcCCCCCCCeecccch
Q 027217 148 SMHHHCPICYEYLFDSLRNTTVMKCGHT-MHCECYHEMIKRDKYCCPICSKSVIDMS 203 (226)
Q Consensus 148 ~~~~~CpICle~lf~s~~~v~~LpCGH~-~H~~C~~~~l~~~~~~CPiCrksi~dm~ 203 (226)
..+..|+||++.. ..++.|||||. |...|+.. ..+||+||+.|....
T Consensus 13 ~~~~~C~IC~~~~----~~~v~~pCgH~~~C~~C~~~-----~~~CP~CR~~i~~~~ 60 (68)
T 2ea5_A 13 ENSKDCVVCQNGT----VNWVLLPCRHTCLCDGCVKY-----FQQCPMCRQFVQESF 60 (68)
T ss_dssp CCSSCCSSSSSSC----CCCEETTTTBCCSCTTHHHH-----CSSCTTTCCCCCCEE
T ss_pred CCCCCCCCcCcCC----CCEEEECCCChhhhHHHHhc-----CCCCCCCCcchhceE
Confidence 4467899999972 35778999999 99999983 369999999998653
No 62
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.34 E-value=3.2e-07 Score=63.94 Aligned_cols=50 Identities=26% Similarity=0.494 Sum_probs=38.3
Q ss_pred cCCCCCCCccchhhcccCCcceeeeccC--C---ccCHHHHHHHHhc-CcCCCCCCCeec
Q 027217 146 ENSMHHHCPICYEYLFDSLRNTTVMKCG--H---TMHCECYHEMIKR-DKYCCPICSKSV 199 (226)
Q Consensus 146 e~~~~~~CpICle~lf~s~~~v~~LpCG--H---~~H~~C~~~~l~~-~~~~CPiCrksi 199 (226)
|......|.||++.. ..+. ++||. + .+|..|+++|+.. ++.+||||+..+
T Consensus 2 e~~~~~~CrIC~~~~---~~~l-~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~ 57 (60)
T 1vyx_A 2 EDEDVPVCWICNEEL---GNER-FRACGCTGELENVHRSCLSTWLTISRNTACQICGVVY 57 (60)
T ss_dssp TTCSCCEETTTTEEC---SCCC-CCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBC
T ss_pred CCCCCCEeEEeecCC---CCce-ecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCee
Confidence 455667899999872 2333 58864 4 9999999999974 468999999765
No 63
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.31 E-value=3e-07 Score=69.91 Aligned_cols=47 Identities=11% Similarity=0.121 Sum_probs=39.5
Q ss_pred CCCCCccchhhcccCCcceeeeccCCccCHHHHHHHHhcCcCCCCCCCeecc
Q 027217 149 MHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVI 200 (226)
Q Consensus 149 ~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~ 200 (226)
.+-.||||++.|.+ || +++|||+|-+.||.+|+. .+.+||+|+..+.
T Consensus 28 ~~~~CpI~~~~m~d---PV-~~~cGhtf~r~~I~~~l~-~~~~cP~~~~~l~ 74 (100)
T 2kre_A 28 DEFRDPLMDTLMTD---PV-RLPSGTIMDRSIILRHLL-NSPTDPFNRQTLT 74 (100)
T ss_dssp TTTBCTTTCSBCSS---EE-EETTTEEEEHHHHHHHTT-SCSBCSSSCCBCC
T ss_pred HhhCCcCccCcccC---Ce-ECCCCCEEchHHHHHHHH-cCCCCCCCCCCCC
Confidence 35679999997543 44 578999999999999998 4789999999886
No 64
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.26 E-value=4.9e-07 Score=68.49 Aligned_cols=46 Identities=13% Similarity=0.127 Sum_probs=39.2
Q ss_pred CCCCccchhhcccCCcceeeeccC-CccCHHHHHHHHhcCcCCCCCCCeecc
Q 027217 150 HHHCPICYEYLFDSLRNTTVMKCG-HTMHCECYHEMIKRDKYCCPICSKSVI 200 (226)
Q Consensus 150 ~~~CpICle~lf~s~~~v~~LpCG-H~~H~~C~~~~l~~~~~~CPiCrksi~ 200 (226)
+-.||||++.|.+ +| +++|| |+|-+.||.+|+.. +.+||+|++.+.
T Consensus 22 ~~~CpI~~~~m~d---PV-~~~cG~htf~r~cI~~~l~~-~~~cP~~~~~l~ 68 (98)
T 1wgm_A 22 EFLDPIMSTLMCD---PV-VLPSSRVTVDRSTIARHLLS-DQTDPFNRSPLT 68 (98)
T ss_dssp TTBCTTTCSBCSS---EE-ECTTTCCEEEHHHHHHHTTT-SCBCTTTCSBCC
T ss_pred hcCCcCccccccC---Ce-ECCCCCeEECHHHHHHHHHh-CCCCCCCCCCCC
Confidence 5679999997544 44 58999 99999999999985 789999999886
No 65
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.25 E-value=5.5e-07 Score=67.23 Aligned_cols=47 Identities=32% Similarity=0.563 Sum_probs=36.5
Q ss_pred CCCCCccchhhcccCCcceeeeccCCccCHHHHHHHHhcC-----cCCCCC--CCee
Q 027217 149 MHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRD-----KYCCPI--CSKS 198 (226)
Q Consensus 149 ~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~-----~~~CPi--Crks 198 (226)
.+..||||++.|.+ +|+...|||+|-+.||.+|+... ..+||+ |++.
T Consensus 6 ~~~~CPI~~~~~~d---PV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 6 SGFTCPITKEEMKK---PVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp SCCBCTTTCSBCSS---EEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred cEeECcCcCchhcC---CEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 34679999987443 55433599999999999999853 369999 9866
No 66
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.20 E-value=6.8e-07 Score=76.51 Aligned_cols=68 Identities=15% Similarity=0.097 Sum_probs=48.5
Q ss_pred CCCCCCCccchhhcccCCcceeeeccCCccCHHHHHHHHhcCcCCCCCCCeecccch-----HHHHHHHHHHHhCCC
Q 027217 147 NSMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVIDMS-----RTWKRIDEELQMNSS 218 (226)
Q Consensus 147 ~~~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~dm~-----~~~~~lD~~i~~~pm 218 (226)
....-.||||++.|.+ || ++||||+|-+.||..|+..+..+||+|+.++..-. ..=+.+++-++..++
T Consensus 205 ~~~~~~c~i~~~~~~d---Pv-~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~l~~n~~l~~~i~~~~~~~~~ 277 (281)
T 2c2l_A 205 IPDYLCGKISFELMRE---PC-ITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAMKEVIDAFISENGW 277 (281)
T ss_dssp CCSTTBCTTTCSBCSS---EE-ECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCEECHHHHHHHHHHHTTCSC
T ss_pred CCcccCCcCcCCHhcC---Ce-ECCCCCEECHHHHHHHHHHCCCCCcCCCCCCchhcCcccHHHHHHHHHHHHHCCC
Confidence 3456789999997543 44 58899999999999999865566999999986311 122445555555544
No 67
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.18 E-value=1.7e-07 Score=68.19 Aligned_cols=44 Identities=32% Similarity=0.685 Sum_probs=36.4
Q ss_pred CCCCccchhhcccCCcceeeeccCCc-cCHHHHHHHHhcCcCCCCCCCeecccc
Q 027217 150 HHHCPICYEYLFDSLRNTTVMKCGHT-MHCECYHEMIKRDKYCCPICSKSVIDM 202 (226)
Q Consensus 150 ~~~CpICle~lf~s~~~v~~LpCGH~-~H~~C~~~~l~~~~~~CPiCrksi~dm 202 (226)
+..|+||++.+ ..+..|||||. |-..|+..| .+||+||+.+...
T Consensus 18 ~~~C~IC~~~~----~~~v~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~~ 62 (79)
T 2yho_A 18 AMLCMVCCEEE----INSTFCPCGHTVCCESCAAQL-----QSCPVCRSRVEHV 62 (79)
T ss_dssp HTBCTTTSSSB----CCEEEETTCBCCBCHHHHTTC-----SBCTTTCCBCCEE
T ss_pred CCEeEEeCccc----CcEEEECCCCHHHHHHHHHhc-----CcCCCCCchhhCe
Confidence 45799999973 34678999999 999999765 3999999999764
No 68
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.16 E-value=4.3e-07 Score=83.68 Aligned_cols=53 Identities=26% Similarity=0.530 Sum_probs=39.5
Q ss_pred CCCCCCccchhhcccCCc-cee---eeccCCccCHHHHHHHHhcCc----------CCCCCCCeecc
Q 027217 148 SMHHHCPICYEYLFDSLR-NTT---VMKCGHTMHCECYHEMIKRDK----------YCCPICSKSVI 200 (226)
Q Consensus 148 ~~~~~CpICle~lf~s~~-~v~---~LpCGH~~H~~C~~~~l~~~~----------~~CPiCrksi~ 200 (226)
....+|+||++.+.++.+ +.+ .++|||.||..|+.+|+++.. .+||.||+.|.
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs 372 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS 372 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence 346689999999665221 111 357999999999999997421 57999999875
No 69
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=97.88 E-value=4.2e-06 Score=74.34 Aligned_cols=50 Identities=22% Similarity=0.436 Sum_probs=41.1
Q ss_pred CCCCCCccchhhcccCCcceeeeccCCccCHHHHHHHHhc-CcCCCCC--CCeecc
Q 027217 148 SMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKR-DKYCCPI--CSKSVI 200 (226)
Q Consensus 148 ~~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~-~~~~CPi--Crksi~ 200 (226)
..+..||||++.|- +||+.+.|||+|-+.||.+|+.. +..+||+ |++.+.
T Consensus 179 ~~el~CPIcl~~f~---DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~ 231 (267)
T 3htk_C 179 KIELTCPITCKPYE---APLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVS 231 (267)
T ss_dssp BCCSBCTTTSSBCS---SEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEEC
T ss_pred ceeeECcCccCccc---CCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCc
Confidence 34567999999853 48877799999999999999974 3468999 999875
No 70
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=97.85 E-value=6.7e-06 Score=69.03 Aligned_cols=48 Identities=15% Similarity=0.142 Sum_probs=39.0
Q ss_pred CCCCCccchhhcccCCcceeeeccCCccCHHHHHHHHhcCcCCCCCCCeecc
Q 027217 149 MHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVI 200 (226)
Q Consensus 149 ~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~ 200 (226)
.+..||||++.|.+ || ++||||+|-+.||..|+.....+||+|+..+.
T Consensus 105 ~~f~CPI~~elm~D---PV-~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~ 152 (179)
T 2f42_A 105 DYLCGKISFELMRE---PC-ITPSGITYDRKDIEEHLQRVGHFDPVTRSPLT 152 (179)
T ss_dssp GGGBCTTTCSBCSS---EE-ECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred HhhcccCccccCCC---Ce-ECCCCCEECHHHHHHHHHhCCCCCCCCcCCCC
Confidence 35679999997543 45 56999999999999999864447999999875
No 71
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=97.71 E-value=7e-06 Score=75.06 Aligned_cols=44 Identities=25% Similarity=0.680 Sum_probs=36.6
Q ss_pred CCCCccchhhcccCCcceeeeccCCc-cCHHHHHHHHhcCcCCCCCCCeecccc
Q 027217 150 HHHCPICYEYLFDSLRNTTVMKCGHT-MHCECYHEMIKRDKYCCPICSKSVIDM 202 (226)
Q Consensus 150 ~~~CpICle~lf~s~~~v~~LpCGH~-~H~~C~~~~l~~~~~~CPiCrksi~dm 202 (226)
+..||||++.+. .++.|||||. |...|+..| .+||+||+.+...
T Consensus 295 ~~~C~IC~~~~~----~~v~lpCgH~~fC~~C~~~~-----~~CP~CR~~i~~~ 339 (345)
T 3t6p_A 295 ERTCKVCMDKEV----SVVFIPCGHLVVCQECAPSL-----RKCPICRGIIKGT 339 (345)
T ss_dssp TCBCTTTSSSBC----CEEEETTCCEEECTTTGGGC-----SBCTTTCCBCCEE
T ss_pred CCCCCccCCcCC----ceEEcCCCChhHhHHHHhcC-----CcCCCCCCCccCe
Confidence 467999999743 4567899999 999999877 5899999998753
No 72
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=97.51 E-value=4e-05 Score=53.20 Aligned_cols=48 Identities=15% Similarity=0.099 Sum_probs=38.4
Q ss_pred CCCCCccchhhcccCCcceeeeccCCccCHHHHHHHHhcCcCCCCCCCeecc
Q 027217 149 MHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVI 200 (226)
Q Consensus 149 ~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~ 200 (226)
+...|||+++.|.+ +|...++||+|=+.+|.+|++. +.+||+.++.+.
T Consensus 2 ~~~~CpIs~~~m~d---PV~~~~sG~~yer~~I~~~l~~-~~~cP~t~~~L~ 49 (61)
T 2bay_A 2 SHMLCAISGKVPRR---PVLSPKSRTIFEKSLLEQYVKD-TGNDPITNEPLS 49 (61)
T ss_dssp --CCCTTTCSCCSS---EEEETTTTEEEEHHHHHHHHHH-HSBCTTTCCBCC
T ss_pred CeEEecCCCCCCCC---CEEeCCCCcEEcHHHHHHHHHh-CCCCcCCcCCCC
Confidence 34679999998553 5554489999999999999985 578999998875
No 73
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.46 E-value=6.8e-05 Score=57.65 Aligned_cols=49 Identities=22% Similarity=0.432 Sum_probs=40.8
Q ss_pred CCccchhhcccCCcceeeeccCCccCHHHHHHHHhcCcCCCCCCCeecccch
Q 027217 152 HCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVIDMS 203 (226)
Q Consensus 152 ~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~dm~ 203 (226)
.|++|.-++.. -.+.+||+|+|-.+|+..|.+.+..+||+|+.+|.+++
T Consensus 3 fC~~C~~Pi~i---ygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~rVe 51 (101)
T 3vk6_A 3 FCDKCGLPIKV---YGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQRIE 51 (101)
T ss_dssp BCTTTCSBCSE---EEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSEEE
T ss_pred ecCccCCCeEE---EeeeccccccHHHHHHHHHHhccCCCCcCcCCeeeeeE
Confidence 47888877433 56788999999999999998767789999999998765
No 74
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=96.06 E-value=0.0035 Score=54.36 Aligned_cols=47 Identities=26% Similarity=0.615 Sum_probs=35.5
Q ss_pred CCCCccchhhcccCCcceeeeccCCccCHHHHHHHHhcC-cCCCCCCCeec
Q 027217 150 HHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRD-KYCCPICSKSV 199 (226)
Q Consensus 150 ~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~-~~~CPiCrksi 199 (226)
-..|.||.+-+.. .++--.|+|.||..|+..|+++. +.+||.|+...
T Consensus 180 i~~C~iC~~iv~~---g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W 227 (238)
T 3nw0_A 180 VKICNICHSLLIQ---GQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYW 227 (238)
T ss_dssp CCBCTTTCSBCSS---CEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBC
T ss_pred CCcCcchhhHHhC---CcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCC
Confidence 4578888887553 23333499999999999999753 46999999864
No 75
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=91.25 E-value=0.16 Score=40.87 Aligned_cols=67 Identities=18% Similarity=0.408 Sum_probs=44.5
Q ss_pred ecCCCCCCCccchhhcccCCcceeeeccCCccCHHHHHHHH----------hcCcCCCCCCCeecc-c----chHHHHHH
Q 027217 145 IENSMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMI----------KRDKYCCPICSKSVI-D----MSRTWKRI 209 (226)
Q Consensus 145 ~e~~~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~l----------~~~~~~CPiCrksi~-d----m~~~~~~l 209 (226)
.+...+..|.||.+. .+-+--=.|--+||..|+..-+ ......||+|.-.-+ . -++++++|
T Consensus 58 d~Dg~~d~C~vC~~G----G~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~~pl~~l~~~c~~~~~~~ 133 (142)
T 2lbm_A 58 DSDGMDEQCRWCAEG----GNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHPEPLLDLVTACNSVFENL 133 (142)
T ss_dssp CTTSCBCSCSSSCCC----SSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCCCTTHHHHHHHHHHHHHH
T ss_pred cCCCCCCeecccCCC----CcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccCccHHHHHHHHHHHHHHH
Confidence 456778889999985 2211112688999999999654 235788999995433 2 33466677
Q ss_pred HHHHHh
Q 027217 210 DEELQM 215 (226)
Q Consensus 210 D~~i~~ 215 (226)
|+.+++
T Consensus 134 ~~~~~~ 139 (142)
T 2lbm_A 134 EQLLQQ 139 (142)
T ss_dssp HHHHTC
T ss_pred HHHHhc
Confidence 776653
No 76
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=91.21 E-value=0.08 Score=40.23 Aligned_cols=44 Identities=20% Similarity=0.580 Sum_probs=35.7
Q ss_pred CCCCccchhhcccCCcceeeeccC-CccCHHHHHHHHhcCcCCCCCCCeecc
Q 027217 150 HHHCPICYEYLFDSLRNTTVMKCG-HTMHCECYHEMIKRDKYCCPICSKSVI 200 (226)
Q Consensus 150 ~~~CpICle~lf~s~~~v~~LpCG-H~~H~~C~~~~l~~~~~~CPiCrksi~ 200 (226)
..||-.|.-. +. ..+.|. |.+...|+..+|+ .+.+||||.+.+-
T Consensus 28 ~~nCKsCWf~-~k-----~LV~C~dHYLCl~CLtlmL~-~SdrCpIC~~pLP 72 (99)
T 2ko5_A 28 PQFCKSCWFE-NK-----GLVECNNHYLCLNCLTLLLS-VSNRCPICKMPLP 72 (99)
T ss_dssp CCCCCSSCSC-CS-----SEEECSSCEEEHHHHHHTCS-SSSEETTTTEECC
T ss_pred cccChhhccc-cC-----CeeeecchhhHHHHHHHHHh-hccCCcccCCcCC
Confidence 4589999854 22 367885 9999999999997 5789999999985
No 77
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=90.18 E-value=0.076 Score=39.11 Aligned_cols=28 Identities=29% Similarity=0.701 Sum_probs=15.4
Q ss_pred EeCCCCccccccccCCCCCCCcceeecCccccc
Q 027217 67 ICSVCDTEQPVAQVCTNCGVNMGEYFCDICKFY 99 (226)
Q Consensus 67 ~Cg~C~~~q~v~~~C~~Cg~~f~~Y~C~~C~l~ 99 (226)
.|..|+.++.+ |..||+. .|||..|+=.
T Consensus 33 fCPeCgq~Le~---lkACGA~--~yFC~~C~~L 60 (81)
T 2jrp_A 33 LCPDCRQPLQV---LKACGAV--DYFCQNGHGL 60 (81)
T ss_dssp ECSSSCSCCCE---EEETTEE--EECCTTTTCC
T ss_pred cCcchhhHHHH---HHhcCCc--CeeeccCCCE
Confidence 45555444333 4555544 7888888633
No 78
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=88.67 E-value=0.22 Score=36.36 Aligned_cols=33 Identities=15% Similarity=0.352 Sum_probs=25.1
Q ss_pred CCCCccchhhcccCCcceee-eccCCccCHHHHHHH
Q 027217 150 HHHCPICYEYLFDSLRNTTV-MKCGHTMHCECYHEM 184 (226)
Q Consensus 150 ~~~CpICle~lf~s~~~v~~-LpCGH~~H~~C~~~~ 184 (226)
+..|+||++..+. .++.. |.|||.|-..|+..+
T Consensus 3 e~~C~~C~~~~~~--~av~~C~~C~~~~C~~Cl~~~ 36 (101)
T 2jun_A 3 KVLCQFCDQDPAQ--DAVKTCVTCEVSYCDECLKAT 36 (101)
T ss_dssp CCBCTTCCSSSCC--BCCEEETTTTEEECHHHHHHH
T ss_pred CCCCcCCCCCCCC--CceEECCcCChHHhHHHCHHH
Confidence 4679999986443 23333 999999999999983
No 79
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=83.40 E-value=0.16 Score=38.26 Aligned_cols=84 Identities=21% Similarity=0.601 Sum_probs=44.7
Q ss_pred CCCcceeCCc-cceeeccccCc-----ccccccc----CcceeecCCCCCCCccchhhcccCCcceeeeccCCccCHHHH
Q 027217 112 DCGICRIGGR-ENYFHCKRCGS-----CYSTSLR----NNHLCIENSMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECY 181 (226)
Q Consensus 112 ~CgiCR~G~~-~~~fHC~~C~~-----C~s~~l~----~~H~C~e~~~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~ 181 (226)
.|.||..+|. ++...|+.|+. |+.+.+. +.=.|.+= ..|.||... .+...-+.--.|.-.||..|+
T Consensus 9 ~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C---~~C~~C~~~-~~~~~ll~Cd~C~~~yH~~Cl 84 (111)
T 2ysm_A 9 NCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPEC---KVCQNCKQS-GEDSKMLVCDTCDKGYHTFCL 84 (111)
T ss_dssp CBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTT---CCCTTTCCC-SCCTTEEECSSSCCEEEGGGS
T ss_pred CCcCCCCCCCCcCCeECCCCCCCcChHHhCCccccccccCccCCcC---CcccccCcc-CCCCCeeECCCCCcHHhHHhc
Confidence 4666666553 55677777764 3443321 11111110 146677764 111111122258899999999
Q ss_pred HHHHh---cCcCCCCCCCeec
Q 027217 182 HEMIK---RDKYCCPICSKSV 199 (226)
Q Consensus 182 ~~~l~---~~~~~CPiCrksi 199 (226)
+.-+. .....||.|....
T Consensus 85 ~ppl~~~P~g~W~C~~C~~c~ 105 (111)
T 2ysm_A 85 QPVMKSVPTNGWKCKNCRICI 105 (111)
T ss_dssp SSCCSSCCSSCCCCHHHHCCS
T ss_pred CCccccCCCCCcCCcCCcCcC
Confidence 85443 2467788886543
No 80
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=81.73 E-value=0.27 Score=37.37 Aligned_cols=76 Identities=24% Similarity=0.483 Sum_probs=42.1
Q ss_pred CCccceeeccccCccccccc------------cCcceeecCCCCCCCccchhhcccCCcceeeeccCCccCHHHHHHHHh
Q 027217 119 GGRENYFHCKRCGSCYSTSL------------RNNHLCIENSMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIK 186 (226)
Q Consensus 119 G~~~~~fHC~~C~~C~s~~l------------~~~H~C~e~~~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~ 186 (226)
|.+++...|+.|+.-+-.+= ..+=.|.+= ..|.||.+.-.+..+-+.--.|...||..|++.-|.
T Consensus 21 g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C---~~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~ 97 (112)
T 3v43_A 21 KKPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIEC---KTCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLT 97 (112)
T ss_dssp SCCCCCEECTTTCCEECHHHHTCCHHHHHHHHTSCCCCTTT---CCBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCS
T ss_pred CCchhceEhhhcCCCCCCchhcCCHHHHHHhhccccccccC---CccccccCcCCCccceEEcCCCCCeeecccCCCCCC
Confidence 34567888888876543210 112222221 157788764111111111125889999999975443
Q ss_pred c---CcCCCCCCCe
Q 027217 187 R---DKYCCPICSK 197 (226)
Q Consensus 187 ~---~~~~CPiCrk 197 (226)
. ....||.|+.
T Consensus 98 ~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 98 RMPKGMWICQICRP 111 (112)
T ss_dssp SCCSSCCCCTTTSC
T ss_pred CCCCCCeECCCCCC
Confidence 2 4678999975
No 81
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=78.77 E-value=1.3 Score=33.67 Aligned_cols=9 Identities=33% Similarity=0.852 Sum_probs=4.3
Q ss_pred ceeecCccc
Q 027217 89 GEYFCDICK 97 (226)
Q Consensus 89 ~~Y~C~~C~ 97 (226)
+.|||..|+
T Consensus 80 vdYFC~~ch 88 (101)
T 2jne_A 80 VDYFCQHGH 88 (101)
T ss_dssp EEEEETTTT
T ss_pred cchhhccCC
Confidence 345555544
No 82
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=75.34 E-value=2.7 Score=31.37 Aligned_cols=69 Identities=25% Similarity=0.701 Sum_probs=34.6
Q ss_pred ceeEeCCCCcccccc--ccCCCCCCCcceeecCcccccc-CCCCCCeeccCCCC---cceeCC-ccceeeccccCccccc
Q 027217 64 KQVICSVCDTEQPVA--QVCTNCGVNMGEYFCDICKFYD-DDIEKGQFHCDDCG---ICRIGG-RENYFHCKRCGSCYST 136 (226)
Q Consensus 64 ~~v~Cg~C~~~q~v~--~~C~~Cg~~f~~Y~C~~C~l~d-d~~~k~~yHC~~Cg---iCR~G~-~~~~fHC~~C~~C~s~ 136 (226)
...+|..|+...... ..|..|+..|=. .|--.. ....+..+.|+.|. +|+.++ .+....|+.|+.-|-.
T Consensus 6 ~~~~C~~C~~~g~~~~ll~C~~C~~~~H~----~Cl~~~~~~~~~~~W~C~~C~~C~~C~~~~~~~~ll~Cd~C~~~yH~ 81 (111)
T 2ysm_A 6 SGANCAVCDSPGDLLDQFFCTTCGQHYHG----MCLDIAVTPLKRAGWQCPECKVCQNCKQSGEDSKMLVCDTCDKGYHT 81 (111)
T ss_dssp CCSCBTTTCCCCCTTTSEECSSSCCEECT----TTTTCCCCTTTSTTCCCTTTCCCTTTCCCSCCTTEEECSSSCCEEEG
T ss_pred CCCCCcCCCCCCCCcCCeECCCCCCCcCh----HHhCCccccccccCccCCcCCcccccCccCCCCCeeECCCCCcHHhH
Confidence 445666665543321 355666554322 121111 11123456666654 555554 2468899998865444
No 83
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=73.05 E-value=0.14 Score=39.20 Aligned_cols=86 Identities=21% Similarity=0.500 Sum_probs=47.2
Q ss_pred CCCCcceeCC--------ccceeeccccCcc-----ccccc-------cCcceeecCCCCCCCccchhhcccCCcceeee
Q 027217 111 DDCGICRIGG--------RENYFHCKRCGSC-----YSTSL-------RNNHLCIENSMHHHCPICYEYLFDSLRNTTVM 170 (226)
Q Consensus 111 ~~CgiCR~G~--------~~~~fHC~~C~~C-----~s~~l-------~~~H~C~e~~~~~~CpICle~lf~s~~~v~~L 170 (226)
+.|+||..|+ +++...|+.|+.- +...+ .+.=.|.+= ..|.||...- +...-+.--
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C---~~C~~C~~~~-~~~~ll~Cd 77 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFTLNMTEAVKTYKWQCIEC---KSCILCGTSE-NDDQLLFCD 77 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCCHHHHHHHHHTTCCCGGG---CCCTTTTCCT-TTTTEEECS
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCChhhhhhccCCCccCcccc---CccCcccccC-CCCceEEcC
Confidence 3466665443 4678889888754 44321 112222221 1577887642 111111112
Q ss_pred ccCCccCHHHHHHHHh---cCcCCCCCCCeecc
Q 027217 171 KCGHTMHCECYHEMIK---RDKYCCPICSKSVI 200 (226)
Q Consensus 171 pCGH~~H~~C~~~~l~---~~~~~CPiCrksi~ 200 (226)
.|.-.||..|+..=|. .....||.|...+.
T Consensus 78 ~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~~~~ 110 (114)
T 2kwj_A 78 DCDRGYHMYCLNPPVAEPPEGSWSCHLCWELLK 110 (114)
T ss_dssp SSCCEEETTTSSSCCSSCCSSCCCCHHHHHHHH
T ss_pred CCCccccccccCCCccCCCCCCeECccccchhh
Confidence 6889999999985332 24567888865443
No 84
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=70.76 E-value=6.7 Score=29.33 Aligned_cols=56 Identities=20% Similarity=0.433 Sum_probs=42.1
Q ss_pred ecCCCCCCCccchhhcccCCccee---eeccCCccCHHHHHHHHhcCcCCCCCCCeecc
Q 027217 145 IENSMHHHCPICYEYLFDSLRNTT---VMKCGHTMHCECYHEMIKRDKYCCPICSKSVI 200 (226)
Q Consensus 145 ~e~~~~~~CpICle~lf~s~~~v~---~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~ 200 (226)
+.....+.|-||.|++-...+.-. -.-|+=.+.+.|++.-.+..+..||-|+...-
T Consensus 11 ~~~~~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 11 LKNLDGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp CSCCSSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred ccccCCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence 344556789999999543333322 23589999999999998888999999997764
No 85
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}
Probab=69.53 E-value=0.59 Score=35.27 Aligned_cols=27 Identities=22% Similarity=0.561 Sum_probs=19.0
Q ss_pred ccCCccCHHHHHHHHh-------cCcCCCCCCCe
Q 027217 171 KCGHTMHCECYHEMIK-------RDKYCCPICSK 197 (226)
Q Consensus 171 pCGH~~H~~C~~~~l~-------~~~~~CPiCrk 197 (226)
-|...+|..|.....+ ...+.||.|+.
T Consensus 80 ~C~~~~H~~C~~~~~~~~~~~~~~~~~~C~~C~~ 113 (117)
T 4bbq_A 80 ICNEIVHPGCLQMDGEGLLNEELPNCWECPKCYQ 113 (117)
T ss_dssp TTCCEECGGGCCSCCCCEECSSSSSEEECTTTC-
T ss_pred ecCCeEECCCCCCCccccccccCCCCeECCCCcC
Confidence 5899999999864321 02488999975
No 86
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=69.12 E-value=2.2 Score=29.68 Aligned_cols=46 Identities=17% Similarity=0.369 Sum_probs=31.4
Q ss_pred CCCCCccchhhcccCCcceeeeccCCccCHHHHHHHHhc---CcCCCCCCCee
Q 027217 149 MHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKR---DKYCCPICSKS 198 (226)
Q Consensus 149 ~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~---~~~~CPiCrks 198 (226)
....|.||.+. .+-+.--.|...||..|++..|.. ....||.|+..
T Consensus 11 ~~~~C~vC~~~----~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~ 59 (66)
T 2lri_C 11 PGARCGVCGDG----TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGD 59 (66)
T ss_dssp TTCCCTTTSCC----TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTC
T ss_pred CCCCcCCCCCC----CeEEECCCCCCceecccCCCccCcCCCCCEECccccCC
Confidence 34569999753 221222258899999999877653 46789999743
No 87
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=67.91 E-value=4.1 Score=32.12 Aligned_cols=68 Identities=16% Similarity=0.415 Sum_probs=41.7
Q ss_pred ccCccccccccCcceeecCCCCCCCccchhhcccCCcceeeeccCCccCHHHHHHHH----------hcCcCCCCCCCee
Q 027217 129 RCGSCYSTSLRNNHLCIENSMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMI----------KRDKYCCPICSKS 198 (226)
Q Consensus 129 ~C~~C~s~~l~~~H~C~e~~~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~l----------~~~~~~CPiCrks 198 (226)
.|..|....+.+.-.-.+...+..|.||.+. .+-+--=.|-..||..|+...+ ......|++|+-+
T Consensus 36 ~C~~C~~~y~~~~~~~d~Dg~~~~C~vC~dG----G~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~~ 111 (129)
T 3ql9_A 36 ICKNCFKYYMSDDISRDSDGMDEQCRWCAEG----GNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHPE 111 (129)
T ss_dssp EEHHHHHHHHHSCCCBCTTSCBSSCTTTCCC----SEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCCG
T ss_pred eCHhHHhhhhccccccCCCCCCCcCeecCCC----CeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCCH
Confidence 3444443333333344566777889999975 2211111578999999999652 2356899999755
Q ss_pred cc
Q 027217 199 VI 200 (226)
Q Consensus 199 i~ 200 (226)
-+
T Consensus 112 pl 113 (129)
T 3ql9_A 112 PL 113 (129)
T ss_dssp GG
T ss_pred HH
Confidence 43
No 88
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=65.42 E-value=1.7 Score=25.71 Aligned_cols=30 Identities=17% Similarity=0.505 Sum_probs=18.8
Q ss_pred CCCCCccchhhcccCCcceeeeccCCccCHHHH
Q 027217 149 MHHHCPICYEYLFDSLRNTTVMKCGHTMHCECY 181 (226)
Q Consensus 149 ~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~ 181 (226)
+...||.|...++.. +.+. .=|..+|+.||
T Consensus 2 m~~~C~~C~k~Vy~~-Ek~~--~~g~~~Hk~CF 31 (31)
T 1zfo_A 2 MNPNCARCGKIVYPT-EKVN--CLDKFWHKACF 31 (31)
T ss_dssp CCCBCSSSCSBCCGG-GCCC--SSSSCCCGGGC
T ss_pred CCCcCCccCCEEecc-eeEE--ECCeEecccCC
Confidence 345688888776653 3333 23788888775
No 89
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=59.89 E-value=3.2 Score=28.30 Aligned_cols=41 Identities=20% Similarity=0.469 Sum_probs=28.2
Q ss_pred CCCCccchhhccc---CCcceeeeccCCccCHHHHHHHHhcCcCCCCCCCeeccc
Q 027217 150 HHHCPICYEYLFD---SLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVID 201 (226)
Q Consensus 150 ~~~CpICle~lf~---s~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~d 201 (226)
...|+.|.+.+.. ..+.+..+ |..+|..|| +|-.|+++|.+
T Consensus 15 ~~~C~~C~~~I~~~g~~~~~~~a~--~~~~H~~CF---------~C~~C~~~L~~ 58 (77)
T 2egq_A 15 AKKCAGCKNPITGFGKGSSVVAYE--GQSWHDYCF---------HCKKCSVNLAN 58 (77)
T ss_dssp CCCCSSSCCCCCCCSSCCCEEEET--TEEEETTTC---------BCSSSCCBCTT
T ss_pred CccCcccCCcccCCCCCceeEEEC--cceeCcccC---------EehhcCCCCCC
Confidence 4578889888764 33334333 788888775 67788888863
No 90
>2dkt_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.89.1.1 g.93.1.1 PDB: 2k2c_A
Probab=59.64 E-value=2.8 Score=33.75 Aligned_cols=32 Identities=25% Similarity=0.716 Sum_probs=22.1
Q ss_pred ceeecCccccccCCCCCCeeccCCCCcceeCC
Q 027217 89 GEYFCDICKFYDDDIEKGQFHCDDCGICRIGG 120 (226)
Q Consensus 89 ~~Y~C~~C~l~dd~~~k~~yHC~~CgiCR~G~ 120 (226)
..|-|+.|.+=--...++-|||+.||+|---.
T Consensus 97 ~~yHC~~CgiCR~G~~~~ffHC~~C~~C~s~~ 128 (143)
T 2dkt_A 97 RQYHCESCGICRIGPKEDFFHCLKCNLCLTTN 128 (143)
T ss_dssp SEEEETTTTEEEESCGGGEEEETTTTEEEEGG
T ss_pred ceecCCCCCceeccCCcCcEECCcCCeeeccc
Confidence 34666655555334568999999999996543
No 91
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=58.96 E-value=4.8 Score=27.01 Aligned_cols=39 Identities=18% Similarity=0.503 Sum_probs=22.3
Q ss_pred CCCccchhhcccCCcceeeeccCCccCHHHHHHHHhcCcCCCCCCCeecc
Q 027217 151 HHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVI 200 (226)
Q Consensus 151 ~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~ 200 (226)
..|+.|.+.+......+..+ |..+|..|| +|-.|+++|.
T Consensus 6 ~~C~~C~~~I~~~~~~~~a~--~~~~H~~CF---------~C~~C~~~L~ 44 (72)
T 1x61_A 6 SGCGGCGEDVVGDGAGVVAL--DRVFHVGCF---------VCSTCRAQLR 44 (72)
T ss_dssp CCCSSSCSCCCSSSCCEECS--SSEECTTTC---------BCSSSCCBCT
T ss_pred CCCccCCCccCCCceEEEEC--CCeEcccCC---------cccccCCcCC
Confidence 45777777655432222222 677777664 4666776664
No 92
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=58.40 E-value=4.3 Score=27.56 Aligned_cols=43 Identities=16% Similarity=0.399 Sum_probs=28.2
Q ss_pred CCCCCCccchhhcccCCcceeeeccCCccCHHHHHHHHhcCcCCCCCCCeeccc
Q 027217 148 SMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVID 201 (226)
Q Consensus 148 ~~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~d 201 (226)
.....|+.|.+.+......+.. =|..+|..|| +|-.|++++.+
T Consensus 9 ~~~~~C~~C~~~I~~~~~~~~a--~~~~~H~~CF---------~C~~C~~~L~~ 51 (77)
T 1g47_A 9 LASATCERCKGGFAPAEKIVNS--NGELYHEQCF---------VCAQCFQQFPE 51 (77)
T ss_dssp CCCCBCSSSCCBCCSTTTCEEE--TTEEECTTTC---------CCTTTCCCCGG
T ss_pred CCCCCchhcCCccCCCceEEEe--CccEeccccC---------eECCCCCCCCC
Confidence 3456789999887643322223 3778888776 56778887764
No 93
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=58.07 E-value=3.6 Score=34.10 Aligned_cols=51 Identities=24% Similarity=0.582 Sum_probs=33.1
Q ss_pred CCCccchhhcccCCcceeee---ccCCccCHHHHHH------HHh----cCcCCCCCCCeeccc
Q 027217 151 HHCPICYEYLFDSLRNTTVM---KCGHTMHCECYHE------MIK----RDKYCCPICSKSVID 201 (226)
Q Consensus 151 ~~CpICle~lf~s~~~v~~L---pCGH~~H~~C~~~------~l~----~~~~~CPiCrksi~d 201 (226)
..||||.....++......+ .|...||..|..- .+. ...|.||.|+..-..
T Consensus 3 ~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~~~ 66 (183)
T 3lqh_A 3 NFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERHPA 66 (183)
T ss_dssp CBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSSSC
T ss_pred CcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCCCH
Confidence 46999987644332222233 4789999999842 121 126999999987664
No 94
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=57.08 E-value=4.2 Score=28.02 Aligned_cols=41 Identities=20% Similarity=0.570 Sum_probs=25.1
Q ss_pred CCCCccchhhcccCCcceeeeccCCccCHHHHHHHHhcCcCCCCCCCeeccc
Q 027217 150 HHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVID 201 (226)
Q Consensus 150 ~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~d 201 (226)
...|+.|.+.+......+..+ |..+|..|| +|-.|++.|.+
T Consensus 15 ~~~C~~C~~~I~~~~~~~~a~--~~~~H~~CF---------~C~~C~~~L~~ 55 (82)
T 1x63_A 15 SPKCKGCFKAIVAGDQNVEYK--GTVWHKDCF---------TCSNCKQVIGT 55 (82)
T ss_dssp SCBCSSSCCBCCSSSCEEECS--SCEEETTTC---------CCSSSCCCCTT
T ss_pred CCcCccCCcccccCceEEEEC--ccccccccC---------chhhCCCccCC
Confidence 356888888765432223223 677887765 56677777754
No 95
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=55.10 E-value=8.9 Score=25.72 Aligned_cols=9 Identities=33% Similarity=1.073 Sum_probs=6.1
Q ss_pred cccCCCCCC
Q 027217 78 AQVCTNCGV 86 (226)
Q Consensus 78 ~~~C~~Cg~ 86 (226)
...||.||.
T Consensus 18 ~~fCPkCG~ 26 (55)
T 2k4x_A 18 HRFCPRCGP 26 (55)
T ss_dssp SCCCTTTTT
T ss_pred cccCcCCCC
Confidence 456777775
No 96
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=54.37 E-value=7.4 Score=23.87 Aligned_cols=16 Identities=31% Similarity=0.700 Sum_probs=12.3
Q ss_pred cCCCCCCCeecccchH
Q 027217 189 KYCCPICSKSVIDMSR 204 (226)
Q Consensus 189 ~~~CPiCrksi~dm~~ 204 (226)
.+.||+|.+.+.+-..
T Consensus 5 GFiCP~C~~~l~s~~~ 20 (34)
T 3mjh_B 5 GFICPQCMKSLGSADE 20 (34)
T ss_dssp EEECTTTCCEESSHHH
T ss_pred ccCCcHHHHHcCCHHH
Confidence 3689999999887544
No 97
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=52.51 E-value=6.5 Score=25.19 Aligned_cols=46 Identities=17% Similarity=0.533 Sum_probs=28.0
Q ss_pred CCccchhhcccCCcceeeeccCCccCHHHHHHHHh---cCcCCCCCCCee
Q 027217 152 HCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIK---RDKYCCPICSKS 198 (226)
Q Consensus 152 ~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~---~~~~~CPiCrks 198 (226)
.|.||... -+..+-+.--.|.-.||..|++.=+. .....||.|.++
T Consensus 2 ~C~vC~~~-~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~~ 50 (51)
T 1f62_A 2 RCKVCRKK-GEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQPA 50 (51)
T ss_dssp CCTTTCCS-SCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSCC
T ss_pred CCCCCCCC-CCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCcccc
Confidence 47777754 11111111226889999999964332 246789999764
No 98
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=52.36 E-value=6.6 Score=26.00 Aligned_cols=20 Identities=25% Similarity=0.541 Sum_probs=10.5
Q ss_pred EeCCCCcccccc-------ccCCCCCC
Q 027217 67 ICSVCDTEQPVA-------QVCTNCGV 86 (226)
Q Consensus 67 ~Cg~C~~~q~v~-------~~C~~Cg~ 86 (226)
+|+.|+++.+.+ -.||.||-
T Consensus 5 ~C~rCg~~fs~~el~~lP~IrCpyCGy 31 (48)
T 4ayb_P 5 RCGKCWKTFTDEQLKVLPGVRCPYCGY 31 (48)
T ss_dssp CCCCTTTTCCCCCSCCCSSSCCTTTCC
T ss_pred EeeccCCCccHHHHhhCCCcccCccCc
Confidence 466666554332 35666653
No 99
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=51.44 E-value=4.8 Score=26.94 Aligned_cols=40 Identities=25% Similarity=0.537 Sum_probs=23.7
Q ss_pred CCCccchhhcccCCcceeeeccCCccCHHHHHHHHhcCcCCCCCCCeeccc
Q 027217 151 HHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVID 201 (226)
Q Consensus 151 ~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~d 201 (226)
..|+.|.+.+......+ ..=|..+|..|| +|-.|+++|.+
T Consensus 6 ~~C~~C~~~I~~~~~~~--~a~~~~~H~~CF---------~C~~C~~~L~~ 45 (72)
T 1wyh_A 6 SGCSACGETVMPGSRKL--EYGGQTWHEHCF---------LCSGCEQPLGS 45 (72)
T ss_dssp CBCSSSCCBCCSSSCEE--CSTTCCEETTTC---------BCTTTCCBTTT
T ss_pred CCCccCCCccccCccEE--EECccccCcccC---------eECCCCCcCCC
Confidence 45777777765422222 223677777665 56677777653
No 100
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=51.01 E-value=8 Score=25.90 Aligned_cols=41 Identities=20% Similarity=0.457 Sum_probs=26.7
Q ss_pred CCCCccchhhccc--CCcceeeeccCCccCHHHHHHHHhcCcCCCCCCCeeccc
Q 027217 150 HHHCPICYEYLFD--SLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVID 201 (226)
Q Consensus 150 ~~~CpICle~lf~--s~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~d 201 (226)
...|+.|.+.+.. +...+. .=|..+|..|| +|-.|+++|.+
T Consensus 5 ~~~C~~C~~~I~~~~~~~~~~--a~~~~wH~~CF---------~C~~C~~~L~~ 47 (72)
T 1x4l_A 5 SSGCAGCTNPISGLGGTKYIS--FEERQWHNDCF---------NCKKCSLSLVG 47 (72)
T ss_dssp SCSBTTTTBCCCCSSSCSCEE--CSSCEECTTTC---------BCSSSCCBCTT
T ss_pred CCCCcCCCccccCCCCcceEE--ECCcccCcccC---------EeccCCCcCCC
Confidence 4568888888664 222222 24788888775 67778887753
No 101
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=50.78 E-value=14 Score=27.45 Aligned_cols=44 Identities=18% Similarity=0.586 Sum_probs=31.3
Q ss_pred CCCCCCccchhhcccCCcceeeec---cCCccCHHHHHHH------------H---hcCcCCCCCCC
Q 027217 148 SMHHHCPICYEYLFDSLRNTTVMK---CGHTMHCECYHEM------------I---KRDKYCCPICS 196 (226)
Q Consensus 148 ~~~~~CpICle~lf~s~~~v~~Lp---CGH~~H~~C~~~~------------l---~~~~~~CPiCr 196 (226)
..+..|+||-- +++. ..+| ||=.||..|+.+. + .....+||-|.
T Consensus 13 ~~D~~C~VC~~--~t~~---~l~pCRvC~RvfH~~CL~r~gy~~~~~a~e~~l~A~T~~GWSC~~Ce 74 (89)
T 1wil_A 13 VNDEMCDVCEV--WTAE---SLFPCRVCTRVFHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHYCD 74 (89)
T ss_dssp CCSCCCTTTCC--CCSS---CCSSCSSSSSCCCHHHHHHHTSCCCCCCCSCSCCCSSSSSCCCTTTC
T ss_pred CCCcccCcccc--cccc---ceeccccccccccHhhcccccccccHHHHHHHHccCCCCCccccccc
Confidence 45778999974 4432 2455 6999999999997 2 12457899994
No 102
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=50.70 E-value=11 Score=19.22 Aligned_cols=19 Identities=26% Similarity=0.415 Sum_probs=14.5
Q ss_pred cCCCCCCCeecccchHHHH
Q 027217 189 KYCCPICSKSVIDMSRTWK 207 (226)
Q Consensus 189 ~~~CPiCrksi~dm~~~~~ 207 (226)
.|.|++|.+++...+...+
T Consensus 2 ~~~C~~C~k~f~~~~~l~~ 20 (30)
T 1klr_A 2 TYQCQYCEFRSADSSNLKT 20 (30)
T ss_dssp CCCCSSSSCCCSCSHHHHH
T ss_pred CccCCCCCCccCCHHHHHH
Confidence 4789999999987665443
No 103
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=49.48 E-value=4 Score=27.83 Aligned_cols=7 Identities=29% Similarity=0.747 Sum_probs=3.2
Q ss_pred Cccchhh
Q 027217 153 CPICYEY 159 (226)
Q Consensus 153 CpICle~ 159 (226)
|.+|...
T Consensus 30 C~~C~~~ 36 (76)
T 1iml_A 30 CEKCGKT 36 (76)
T ss_dssp CTTTCCB
T ss_pred ccccCcc
Confidence 4444444
No 104
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=48.46 E-value=6.3 Score=23.21 Aligned_cols=16 Identities=38% Similarity=1.055 Sum_probs=13.5
Q ss_pred cCCCCCCCeecccchH
Q 027217 189 KYCCPICSKSVIDMSR 204 (226)
Q Consensus 189 ~~~CPiCrksi~dm~~ 204 (226)
.++||+|+..+-|+..
T Consensus 3 k~~CpvCk~q~Pd~kt 18 (28)
T 2jvx_A 3 DFCCPKCQYQAPDMDT 18 (28)
T ss_dssp CEECTTSSCEESSHHH
T ss_pred cccCccccccCcChHH
Confidence 5789999999998765
No 105
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=48.00 E-value=8.3 Score=25.37 Aligned_cols=10 Identities=30% Similarity=0.996 Sum_probs=6.9
Q ss_pred cccCCCCCCC
Q 027217 78 AQVCTNCGVN 87 (226)
Q Consensus 78 ~~~C~~Cg~~ 87 (226)
-..||.||+.
T Consensus 19 ~k~CP~CG~~ 28 (50)
T 3j20_Y 19 NKFCPRCGPG 28 (50)
T ss_dssp SEECSSSCSS
T ss_pred cccCCCCCCc
Confidence 4568888873
No 106
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=47.71 E-value=7.5 Score=25.92 Aligned_cols=40 Identities=20% Similarity=0.542 Sum_probs=23.5
Q ss_pred CCCccchhhcccCCcceeeeccCCccCHHHHHHHHhcCcCCCCCCCeeccc
Q 027217 151 HHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVID 201 (226)
Q Consensus 151 ~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~d 201 (226)
..|+.|.+.+......+.. =|..+|..|| +|-.|+++|.+
T Consensus 6 ~~C~~C~~~I~~~~~~~~a--~~~~~H~~CF---------~C~~C~~~L~~ 45 (72)
T 1x4k_A 6 SGCQECKKTIMPGTRKMEY--KGSSWHETCF---------ICHRCQQPIGT 45 (72)
T ss_dssp CCBSSSCCCCCSSSCEEEE--TTEEEETTTT---------CCSSSCCCCCS
T ss_pred CCCccCCCcccCCceEEEE--CcCeecccCC---------cccccCCccCC
Confidence 4577777776543222222 3667777665 56667776654
No 107
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=47.56 E-value=3.2 Score=28.87 Aligned_cols=49 Identities=22% Similarity=0.451 Sum_probs=31.1
Q ss_pred CCCccchhhcccCCcceeeeccCCccCHHHHHHHHhc---CcCCCCCCCeecc
Q 027217 151 HHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKR---DKYCCPICSKSVI 200 (226)
Q Consensus 151 ~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~---~~~~CPiCrksi~ 200 (226)
..|+||...- +...-+.-=.|.-.||..|+..-+.. ..+.||.|...+.
T Consensus 19 ~~C~~C~~~~-~~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~ 70 (75)
T 2k16_A 19 WICPGCNKPD-DGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIK 70 (75)
T ss_dssp ECBTTTTBCC-SSCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHC
T ss_pred cCCCCCCCCC-CCCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchh
Confidence 3599998762 21111111258899999999754432 4688999986553
No 108
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=46.82 E-value=8.7 Score=26.40 Aligned_cols=41 Identities=22% Similarity=0.505 Sum_probs=25.4
Q ss_pred CCCCccchhhcccCCcceeeeccCCccCHHHHHHHHhcCcCCCCCCCeeccc
Q 027217 150 HHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVID 201 (226)
Q Consensus 150 ~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~d 201 (226)
...|..|.+.+......+.. =|..+|..|| +|-.|+++|.+
T Consensus 15 ~~~C~~C~~~I~~~~~~~~a--~~~~~H~~CF---------~C~~C~~~L~~ 55 (82)
T 2ehe_A 15 ANTCAECQQLIGHDSRELFY--EDRHFHEGCF---------RCCRCQRSLAD 55 (82)
T ss_dssp SCBCTTTCCBCCSSCCBCCC--SSCCCBTTTS---------BCTTTCCBCSS
T ss_pred CCcCccCCCccccCcEEEEe--CCccccccCC---------eecCCCCccCC
Confidence 34688888876632222222 2778887765 57778887763
No 109
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=46.40 E-value=9 Score=26.04 Aligned_cols=41 Identities=22% Similarity=0.467 Sum_probs=27.0
Q ss_pred CCCCccchhhccc--CCcceeeeccCCccCHHHHHHHHhcCcCCCCCCCeeccc
Q 027217 150 HHHCPICYEYLFD--SLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVID 201 (226)
Q Consensus 150 ~~~CpICle~lf~--s~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~d 201 (226)
...|+.|.+.+.. ..+.+. .=|..+|..|| +|-.|+++|.+
T Consensus 5 ~~~C~~C~~~I~~~g~~~~~~--a~~~~wH~~CF---------~C~~C~~~L~~ 47 (76)
T 1x68_A 5 SSGCVACSKPISGLTGAKFIC--FQDSQWHSECF---------NCGKCSVSLVG 47 (76)
T ss_dssp CCCCTTTCCCCCTTTTCCEEE--ETTEEEEGGGC---------BCTTTCCBCSS
T ss_pred CCCCccCCCcccCCCCceeEE--ECCcccCcccC---------ChhhCCCcCCC
Confidence 3568888888664 223333 34778888775 67788888763
No 110
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=45.71 E-value=6.8 Score=26.61 Aligned_cols=40 Identities=25% Similarity=0.593 Sum_probs=27.0
Q ss_pred CCCCccchhhcccCCcceeeeccCCccCHHHHHHHHhcCcCCCCCCCeeccc
Q 027217 150 HHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVID 201 (226)
Q Consensus 150 ~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~d 201 (226)
...|+.|.+.+... +.+. .=|..+|..|| +|..|+++|.+
T Consensus 9 ~~~C~~C~~~I~~~-~~v~--a~~~~~H~~CF---------~C~~C~~~L~~ 48 (76)
T 2cu8_A 9 ASKCPKCDKTVYFA-EKVS--SLGKDWHKFCL---------KCERCSKTLTP 48 (76)
T ss_dssp CCBCTTTCCBCCTT-TEEE--ETTEEEETTTC---------BCSSSCCBCCT
T ss_pred CCCCcCCCCEeECC-eEEE--ECCeEeeCCCC---------CCCCCCCccCC
Confidence 45688888886642 2333 34788887765 67788888764
No 111
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=45.66 E-value=8.2 Score=26.47 Aligned_cols=37 Identities=19% Similarity=0.412 Sum_probs=22.1
Q ss_pred CCCccchhhcccCCcceeeeccCCccCHHHHHHHHhcCcCCCCCCCeecc
Q 027217 151 HHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVI 200 (226)
Q Consensus 151 ~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~ 200 (226)
..|+.|.+.+.+ +.+.. =|..+|..|| +|-.|++.|.
T Consensus 16 ~~C~~C~~~I~~--~~~~a--~~~~~H~~CF---------~C~~C~~~L~ 52 (81)
T 1x6a_A 16 EFCHGCSLLMTG--PFMVA--GEFKYHPECF---------ACMSCKVIIE 52 (81)
T ss_dssp CBCTTTCCBCCS--CCBCC--TTCCBCTTSC---------BCTTTCCBCC
T ss_pred CcCccCCCCcCc--eEEEE--CCceeccccC---------CccCCCCccC
Confidence 457777777652 22222 3677776654 5667777764
No 112
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=45.28 E-value=1.7 Score=29.42 Aligned_cols=49 Identities=22% Similarity=0.368 Sum_probs=31.4
Q ss_pred CCCCccchhhcccCCcceeeeccCCccCHHHHHHHHh----cCcCCCCCCCee
Q 027217 150 HHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIK----RDKYCCPICSKS 198 (226)
Q Consensus 150 ~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~----~~~~~CPiCrks 198 (226)
...||||.....+...-|.--.|.-.||..|+.--.. ...|.||.|+..
T Consensus 6 ~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 6 SGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp CCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 4569999876433222223336889999999864321 146889999753
No 113
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=44.71 E-value=9.1 Score=27.93 Aligned_cols=25 Identities=16% Similarity=0.619 Sum_probs=12.4
Q ss_pred eEeCCCCccccccccCCCCCCCcce
Q 027217 66 VICSVCDTEQPVAQVCTNCGVNMGE 90 (226)
Q Consensus 66 v~Cg~C~~~q~v~~~C~~Cg~~f~~ 90 (226)
..|..|+..-+....||.||.++..
T Consensus 19 ~~C~~C~~~~~~~afCPeCgq~Le~ 43 (81)
T 2jrp_A 19 AHCETCAKDFSLQALCPDCRQPLQV 43 (81)
T ss_dssp EECTTTCCEEEEEEECSSSCSCCCE
T ss_pred eECccccccCCCcccCcchhhHHHH
Confidence 3455555544444455555555543
No 114
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=44.19 E-value=8.4 Score=26.84 Aligned_cols=43 Identities=23% Similarity=0.532 Sum_probs=28.9
Q ss_pred CCCCCCccchhhcccCCcceeeeccCCccCHHHHHHHHhcCcCCCCCCCeecccc
Q 027217 148 SMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVIDM 202 (226)
Q Consensus 148 ~~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~dm 202 (226)
.....|+.|.+.+... +.+. .=|..+|..|| +|-.|+++|.+.
T Consensus 13 ~~~~~C~~C~~~I~~~-e~v~--a~~~~wH~~CF---------~C~~C~~~L~~~ 55 (82)
T 2co8_A 13 GAGDLCALCGEHLYVL-ERLC--VNGHFFHRSCF---------RCHTCEATLWPG 55 (82)
T ss_dssp CSSCBCSSSCCBCCTT-TBCC--BTTBCCBTTTC---------BCSSSCCBCCTT
T ss_pred CCCCCCcccCCCcccc-eEEE--ECCCeeCCCcC---------EEcCCCCCcCCC
Confidence 3456799999887643 2333 23788998875 577788877643
No 115
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=44.17 E-value=12 Score=19.10 Aligned_cols=16 Identities=25% Similarity=0.654 Sum_probs=13.0
Q ss_pred cCCCCCCCeecccchH
Q 027217 189 KYCCPICSKSVIDMSR 204 (226)
Q Consensus 189 ~~~CPiCrksi~dm~~ 204 (226)
.|.|++|.+++...+.
T Consensus 3 ~~~C~~C~k~f~~~~~ 18 (28)
T 2kvf_A 3 PYSCSVCGKRFSLKHQ 18 (28)
T ss_dssp SEECSSSCCEESCHHH
T ss_pred CccCCCCCcccCCHHH
Confidence 5789999999987554
No 116
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=44.06 E-value=15 Score=18.47 Aligned_cols=18 Identities=22% Similarity=0.447 Sum_probs=13.8
Q ss_pred cCCCCCCCeecccchHHH
Q 027217 189 KYCCPICSKSVIDMSRTW 206 (226)
Q Consensus 189 ~~~CPiCrksi~dm~~~~ 206 (226)
.|.|++|.+++...+...
T Consensus 2 ~~~C~~C~~~f~~~~~l~ 19 (29)
T 2m0e_A 2 EHKCPHCDKKFNQVGNLK 19 (29)
T ss_dssp CCCCSSCCCCCCTTTHHH
T ss_pred CCcCCCCCcccCCHHHHH
Confidence 478999999998765543
No 117
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=43.47 E-value=8.3 Score=27.50 Aligned_cols=43 Identities=23% Similarity=0.448 Sum_probs=28.5
Q ss_pred CCccchhhcccCCcceeeeccCCccCHHHHHHHHhcCcCCCCCCCeecc
Q 027217 152 HCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVI 200 (226)
Q Consensus 152 ~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~ 200 (226)
.|..|...|.+. . -...=|..+...|+.+. ...+|..|++.|.
T Consensus 35 ~C~~C~~~L~~~--~-~~~~~g~~yC~~cy~~~---~~~~C~~C~~~I~ 77 (101)
T 2cup_A 35 RCAKCLHPLANE--T-FVAKDNKILCNKCTTRE---DSPKCKGCFKAIV 77 (101)
T ss_dssp CCSSSCCCTTSS--C-CEEETTEEECHHHHTTC---CCCBCSSSCCBCC
T ss_pred cccccCCCCCcC--e-eECcCCEEEChhHhhhh---cCCccccCCCccc
Confidence 577777776321 1 12334777888888654 3468999999997
No 118
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=43.36 E-value=11 Score=26.13 Aligned_cols=40 Identities=23% Similarity=0.531 Sum_probs=27.2
Q ss_pred CCCCCccchhhcccCCcceeeeccCCccCHHHHHHHHhcCcCCCCCCCeecc
Q 027217 149 MHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVI 200 (226)
Q Consensus 149 ~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~ 200 (226)
....|+.|.+.+... +.+..+ |..+|..|| +|-.|+++|.
T Consensus 14 ~~~~C~~C~~~I~~~-~~v~a~--~~~wH~~CF---------~C~~C~~~L~ 53 (80)
T 2dj7_A 14 GPSHCAGCKEEIKHG-QSLLAL--DKQWHVSCF---------KCQTCSVILT 53 (80)
T ss_dssp SCSCCTTTCCCCSSS-CCEEET--TEEECTTTC---------BCSSSCCBCS
T ss_pred CCCCCcCcCCeeCCC-eEEEEC--CcccccccC---------CcCcCCCCcC
Confidence 345788898887643 334443 788888775 6777888775
No 119
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=42.83 E-value=13 Score=18.65 Aligned_cols=15 Identities=33% Similarity=0.897 Sum_probs=12.1
Q ss_pred CCCCCCCeecccchH
Q 027217 190 YCCPICSKSVIDMSR 204 (226)
Q Consensus 190 ~~CPiCrksi~dm~~ 204 (226)
|.|++|.+++...+.
T Consensus 2 ~~C~~C~k~f~~~~~ 16 (27)
T 1znf_A 2 YKCGLCERSFVEKSA 16 (27)
T ss_dssp CBCSSSCCBCSSHHH
T ss_pred ccCCCCCCcCCCHHH
Confidence 689999999886544
No 120
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=42.73 E-value=8.6 Score=25.87 Aligned_cols=48 Identities=21% Similarity=0.523 Sum_probs=31.9
Q ss_pred CCCCCCCccchhhcccCCcceeeeccCCccCHHHHHHHHh---cCcCCCCCCCee
Q 027217 147 NSMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIK---RDKYCCPICSKS 198 (226)
Q Consensus 147 ~~~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~---~~~~~CPiCrks 198 (226)
...+..|.||.+. .+-+.--.|.-.||..|+..-+. .....||.|.+.
T Consensus 8 ~~~~~~C~vC~~~----g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 8 TDHQDYCEVCQQG----GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKE 58 (61)
T ss_dssp SCCCSSCTTTSCC----SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred CCCCCCCccCCCC----CcEEECCCCChhhhhhccCCCCCCCCCCceECcccccc
Confidence 3446679999863 22111225788999999986432 357889999753
No 121
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=42.59 E-value=19 Score=18.19 Aligned_cols=16 Identities=13% Similarity=0.727 Sum_probs=12.8
Q ss_pred cCCCCCCCeecccchH
Q 027217 189 KYCCPICSKSVIDMSR 204 (226)
Q Consensus 189 ~~~CPiCrksi~dm~~ 204 (226)
.+.|++|.+++...+.
T Consensus 2 ~~~C~~C~~~f~~~~~ 17 (29)
T 1ard_A 2 SFVCEVCTRAFARQEH 17 (29)
T ss_dssp CCBCTTTCCBCSSHHH
T ss_pred CeECCCCCcccCCHHH
Confidence 4789999999986544
No 122
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=42.54 E-value=17 Score=33.40 Aligned_cols=48 Identities=19% Similarity=0.516 Sum_probs=34.1
Q ss_pred CCCCccchhhcccCCcceeeeccCCc--cCHHHHHHHHh-cCcCCCCCCCeecc
Q 027217 150 HHHCPICYEYLFDSLRNTTVMKCGHT--MHCECYHEMIK-RDKYCCPICSKSVI 200 (226)
Q Consensus 150 ~~~CpICle~lf~s~~~v~~LpCGH~--~H~~C~~~~l~-~~~~~CPiCrksi~ 200 (226)
...|||=+..|. .+++...|.|+ |-..=|.++.. ....+||+|.+.+.
T Consensus 249 SL~CPlS~~ri~---~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~ 299 (371)
T 3i2d_A 249 SLQCPISYTRMK---YPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIA 299 (371)
T ss_dssp ESBCTTTSSBCS---SEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCC
T ss_pred eecCCCcccccc---ccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccC
Confidence 347998777644 48888999987 55544444432 35789999999884
No 123
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=40.79 E-value=18 Score=33.04 Aligned_cols=47 Identities=23% Similarity=0.559 Sum_probs=34.3
Q ss_pred CCCccchhhcccCCcceeeeccCCc--cCHHHHHHHHh-cCcCCCCCCCeecc
Q 027217 151 HHCPICYEYLFDSLRNTTVMKCGHT--MHCECYHEMIK-RDKYCCPICSKSVI 200 (226)
Q Consensus 151 ~~CpICle~lf~s~~~v~~LpCGH~--~H~~C~~~~l~-~~~~~CPiCrksi~ 200 (226)
..|||=+..|. .+++...|.|+ |-..=|.++.. ....+||+|++.+.
T Consensus 216 L~CPlS~~ri~---~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~ 265 (360)
T 4fo9_A 216 LMCPLGKMRLT---IPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAA 265 (360)
T ss_dssp SBCTTTCSBCS---SEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCC
T ss_pred eeCCCccceec---cCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccC
Confidence 46998777644 48888999987 66555555543 35789999999985
No 124
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=40.47 E-value=21 Score=19.36 Aligned_cols=20 Identities=15% Similarity=0.302 Sum_probs=15.1
Q ss_pred CcCCCCCCCeecccchHHHH
Q 027217 188 DKYCCPICSKSVIDMSRTWK 207 (226)
Q Consensus 188 ~~~~CPiCrksi~dm~~~~~ 207 (226)
..|.|++|.+++...+...+
T Consensus 8 ~~~~C~~C~k~f~~~~~l~~ 27 (36)
T 2elr_A 8 KTHLCDMCGKKFKSKGTLKS 27 (36)
T ss_dssp SSCBCTTTCCBCSSHHHHHH
T ss_pred CCeecCcCCCCcCchHHHHH
Confidence 46899999999987654433
No 125
>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=40.44 E-value=12 Score=19.32 Aligned_cols=16 Identities=25% Similarity=0.829 Sum_probs=12.9
Q ss_pred cCCCCCCCeecccchH
Q 027217 189 KYCCPICSKSVIDMSR 204 (226)
Q Consensus 189 ~~~CPiCrksi~dm~~ 204 (226)
.|.|++|.+++...+.
T Consensus 3 ~~~C~~C~k~f~~~~~ 18 (27)
T 2kvg_A 3 PYRCPLCRAGCPSLAS 18 (27)
T ss_dssp TEEETTTTEEESCHHH
T ss_pred CcCCCCCCcccCCHHH
Confidence 5789999999986554
No 126
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=40.37 E-value=20 Score=19.62 Aligned_cols=18 Identities=22% Similarity=0.578 Sum_probs=14.2
Q ss_pred CcCCCCCCCeecccchHH
Q 027217 188 DKYCCPICSKSVIDMSRT 205 (226)
Q Consensus 188 ~~~~CPiCrksi~dm~~~ 205 (226)
..|.||+|.+++...+..
T Consensus 10 k~~~C~~C~k~f~~~~~l 27 (37)
T 1p7a_A 10 KPFQCPDCDRSFSRSDHL 27 (37)
T ss_dssp SSBCCTTTCCCBSSHHHH
T ss_pred CCccCCCCCcccCcHHHH
Confidence 468999999999876543
No 127
>1qxf_A GR2, 30S ribosomal protein S27E; structural genomics, beta sheet, PSI, protein structure initiative; NMR {Archaeoglobus fulgidus} SCOP: g.41.8.4
Probab=39.93 E-value=11 Score=26.45 Aligned_cols=35 Identities=26% Similarity=0.459 Sum_probs=23.1
Q ss_pred eeEeCCCCccccc------cccCCCCCCCcceeecCccccc
Q 027217 65 QVICSVCDTEQPV------AQVCTNCGVNMGEYFCDICKFY 99 (226)
Q Consensus 65 ~v~Cg~C~~~q~v------~~~C~~Cg~~f~~Y~C~~C~l~ 99 (226)
.|.|..|.++|.+ ...|..||..+++-.=.+-+|-
T Consensus 7 ~VKCp~C~niq~VFShA~tvV~C~~Cg~~L~~PTGGKA~l~ 47 (66)
T 1qxf_A 7 KVKCPDCEHEQVIFDHPSTIVKCIICGRTVAEPTGGKGNIK 47 (66)
T ss_dssp EEECTTTCCEEEEESSCSSCEECSSSCCEEEECCSSSCEEC
T ss_pred EEECCCCCCceEEEecCceEEEcccCCCEEeecCCcceeee
Confidence 5778888888766 1368888877766554444443
No 128
>1ryq_A DNA-directed RNA polymerase, subunit E''; structural genomics, zinc, PSI, protein structure initiative; 1.38A {Pyrococcus furiosus} SCOP: g.41.9.3 PDB: 3qqc_E
Probab=39.66 E-value=16 Score=25.81 Aligned_cols=24 Identities=21% Similarity=0.551 Sum_probs=18.8
Q ss_pred cceeEeCCCCccccccccCCCCCCC
Q 027217 63 VKQVICSVCDTEQPVAQVCTNCGVN 87 (226)
Q Consensus 63 ~~~v~Cg~C~~~q~v~~~C~~Cg~~ 87 (226)
.++..|..|...+ ..+.||+||..
T Consensus 9 ~~~~AC~~C~~~~-~~~~CPnC~s~ 32 (69)
T 1ryq_A 9 SSEKACRHCHYIT-SEDRCPVCGSR 32 (69)
T ss_dssp --CEEETTTCBEE-SSSSCTTTCCC
T ss_pred chhhhHHhCCccc-cCCcCCCccCC
Confidence 4678999999987 77899999843
No 129
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=39.12 E-value=23 Score=31.46 Aligned_cols=24 Identities=25% Similarity=0.643 Sum_probs=20.9
Q ss_pred ceeEeCCCCcccccc-ccCCCCCCC
Q 027217 64 KQVICSVCDTEQPVA-QVCTNCGVN 87 (226)
Q Consensus 64 ~~v~Cg~C~~~q~v~-~~C~~Cg~~ 87 (226)
+-..|+.|+++..+. ..|++||..
T Consensus 207 R~l~Cs~C~t~W~~~R~~C~~Cg~~ 231 (309)
T 2fiy_A 207 RYLSCSLCACEWHYVRIKCSHCEES 231 (309)
T ss_dssp EEEEETTTCCEEECCTTSCSSSCCC
T ss_pred EEEEeCCCCCEEeecCcCCcCCCCC
Confidence 479999999998774 689999987
No 130
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=39.04 E-value=13 Score=25.66 Aligned_cols=40 Identities=15% Similarity=0.315 Sum_probs=26.3
Q ss_pred CCCCCccchhhcccCCcceeeeccCCccCHHHHHHHHhcCcCCCCCCCeeccc
Q 027217 149 MHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVID 201 (226)
Q Consensus 149 ~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~d 201 (226)
....|+.|.+.+.+ +.+. .=|..+|..|| +|-.|+++|.+
T Consensus 14 ~~~~C~~C~~~I~~--~~v~--a~~~~~H~~CF---------~C~~C~~~L~~ 53 (79)
T 2cor_A 14 GKYICQKCHAIIDE--QPLI--FKNDPYHPDHF---------NCANCGKELTA 53 (79)
T ss_dssp CCCBCTTTCCBCCS--CCCC--CSSSCCCTTTS---------BCSSSCCBCCT
T ss_pred CCCCCccCCCEecc--eEEE--ECcceeCCCCC---------EeCCCCCccCC
Confidence 34568888887663 2233 23778887765 67778888764
No 131
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=39.01 E-value=15 Score=18.70 Aligned_cols=16 Identities=25% Similarity=0.771 Sum_probs=13.0
Q ss_pred cCCCCCCCeecccchH
Q 027217 189 KYCCPICSKSVIDMSR 204 (226)
Q Consensus 189 ~~~CPiCrksi~dm~~ 204 (226)
.+.|++|.+++...+.
T Consensus 3 ~~~C~~C~k~f~~~~~ 18 (27)
T 2kvh_A 3 PFSCSLCPQRSRDFSA 18 (27)
T ss_dssp CEECSSSSCEESSHHH
T ss_pred CccCCCcChhhCCHHH
Confidence 5789999999987554
No 132
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=38.91 E-value=14 Score=25.18 Aligned_cols=38 Identities=21% Similarity=0.478 Sum_probs=22.7
Q ss_pred CCCccchhhcccCCcceeeeccCCccCHHHHHHHHhcCcCCCCCCCeeccc
Q 027217 151 HHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVID 201 (226)
Q Consensus 151 ~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~d 201 (226)
..|+.|.+.+.+ +.+.. =|..+|..|| +|-.|+++|.+
T Consensus 16 ~~C~~C~~~I~~--~~v~a--~~~~~H~~CF---------~C~~C~~~L~~ 53 (80)
T 1x3h_A 16 PKCGGCNRPVLE--NYLSA--MDTVWHPECF---------VCGDCFTSFST 53 (80)
T ss_dssp CBCTTTCCBCCS--SCEEE--TTEEECTTTC---------BCSSSCCBSCS
T ss_pred CccccCCCeecc--eeEEE--CCCeEecCcC---------ChhhCCCCCCC
Confidence 457777776554 22322 3667777654 56677777654
No 133
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=38.64 E-value=13 Score=26.16 Aligned_cols=41 Identities=17% Similarity=0.363 Sum_probs=25.5
Q ss_pred CCCCCCccchhhcccCCcceeeeccCCccCHHHHHHHHhcCcCCCCCCCeeccc
Q 027217 148 SMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVID 201 (226)
Q Consensus 148 ~~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~d 201 (226)
.....|+.|.+.+.+ +.+. .=|..+|..|| +|-.|++.|.+
T Consensus 23 ~~~~~C~~C~~~I~~--~~v~--a~~~~~H~~CF---------~C~~C~~~L~~ 63 (90)
T 2dar_A 23 KRTPMCAHCNQVIRG--PFLV--ALGKSWHPEEF---------NCAHCKNTMAY 63 (90)
T ss_dssp TCCCBBSSSCCBCCS--CEEE--ETTEEECTTTC---------BCSSSCCBCSS
T ss_pred CCCCCCccCCCEecc--eEEE--ECCccccccCC---------ccCCCCCCCCC
Confidence 344568888877642 2222 34778887765 56677777764
No 134
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1
Probab=38.50 E-value=23 Score=19.26 Aligned_cols=20 Identities=30% Similarity=0.688 Sum_probs=15.1
Q ss_pred cCCCCCCCeecccchHHHHH
Q 027217 189 KYCCPICSKSVIDMSRTWKR 208 (226)
Q Consensus 189 ~~~CPiCrksi~dm~~~~~~ 208 (226)
.|.|++|.+++...+...+.
T Consensus 2 p~~C~~C~k~F~~~~~L~~H 21 (33)
T 1rim_A 2 KFACPECPKRFMRSDHLSKH 21 (33)
T ss_dssp CCCCSSSCCCCSSHHHHHHH
T ss_pred cccCCCCCchhCCHHHHHHH
Confidence 47899999999876654444
No 135
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=38.36 E-value=14 Score=24.47 Aligned_cols=38 Identities=26% Similarity=0.723 Sum_probs=23.0
Q ss_pred CCCccchhhcccCCcceeeeccCCccCHHHHHHHHhcCcCCCCCCCeeccc
Q 027217 151 HHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVID 201 (226)
Q Consensus 151 ~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~d 201 (226)
..|+.|.+.+.+ +.+.. =|..+|..|| +|-.|++.|.+
T Consensus 6 ~~C~~C~~~I~~--~~~~a--~~~~~H~~CF---------~C~~C~~~L~~ 43 (70)
T 2d8x_A 6 SGCHQCGEFIIG--RVIKA--MNNSWHPECF---------RCDLCQEVLAD 43 (70)
T ss_dssp SBCSSSCCBCCS--CCEEE--TTEEECTTTS---------BCSSSCCBCSS
T ss_pred CcCccCCCEecc--eEEEE--CcccccccCC---------EeCCCCCcCCC
Confidence 457777776653 22222 3677777765 56677777664
No 136
>3lpe_B DNA-directed RNA polymerase subunit E''; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} SCOP: g.41.9.0
Probab=38.34 E-value=14 Score=25.29 Aligned_cols=19 Identities=21% Similarity=0.551 Sum_probs=14.9
Q ss_pred EeCCCCccccccccCCCCCC
Q 027217 67 ICSVCDTEQPVAQVCTNCGV 86 (226)
Q Consensus 67 ~Cg~C~~~q~v~~~C~~Cg~ 86 (226)
-|+.|+..++.. .||+|+.
T Consensus 3 AC~~C~~v~~~~-~CpnC~~ 21 (59)
T 3lpe_B 3 ACLKCKYLTNDE-ICPICHS 21 (59)
T ss_dssp EETTTCBEESSS-BCTTTCC
T ss_pred ccccCCcccCCC-CCCCCCC
Confidence 488888887665 6999886
No 137
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=38.05 E-value=31 Score=25.68 Aligned_cols=26 Identities=27% Similarity=0.658 Sum_probs=18.3
Q ss_pred ccCCccCHHHHHH------HHhcCcCCCCCCC
Q 027217 171 KCGHTMHCECYHE------MIKRDKYCCPICS 196 (226)
Q Consensus 171 pCGH~~H~~C~~~------~l~~~~~~CPiCr 196 (226)
.||..||..|+.. .+......||-|+
T Consensus 31 ~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 62 (112)
T 3v43_A 31 DCGNSGHPSCLKFSPELTVRVKALRWQCIECK 62 (112)
T ss_dssp TTCCEECHHHHTCCHHHHHHHHTSCCCCTTTC
T ss_pred hcCCCCCCchhcCCHHHHHHhhccccccccCC
Confidence 6899999999952 2334566677664
No 138
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=37.71 E-value=16 Score=18.58 Aligned_cols=16 Identities=31% Similarity=0.877 Sum_probs=12.8
Q ss_pred cCCCCCCCeecccchH
Q 027217 189 KYCCPICSKSVIDMSR 204 (226)
Q Consensus 189 ~~~CPiCrksi~dm~~ 204 (226)
.+.|++|.+++...+.
T Consensus 2 ~~~C~~C~k~f~~~~~ 17 (29)
T 1rik_A 2 KFACPECPKRFMRSDH 17 (29)
T ss_dssp CEECSSSSCEESCSHH
T ss_pred CccCCCCCchhCCHHH
Confidence 3789999999987654
No 139
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=37.45 E-value=20 Score=18.36 Aligned_cols=18 Identities=17% Similarity=0.547 Sum_probs=13.8
Q ss_pred cCCCCCCCeecccchHHH
Q 027217 189 KYCCPICSKSVIDMSRTW 206 (226)
Q Consensus 189 ~~~CPiCrksi~dm~~~~ 206 (226)
.|.|+.|.+++...+...
T Consensus 2 ~~~C~~C~k~f~~~~~l~ 19 (30)
T 1paa_A 2 AYACGLCNRAFTRRDLLI 19 (30)
T ss_dssp CSBCTTTCCBCSSSHHHH
T ss_pred CcCCcccCcccCChHHHH
Confidence 478999999998765433
No 140
>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=37.30 E-value=18 Score=18.20 Aligned_cols=16 Identities=19% Similarity=0.389 Sum_probs=12.7
Q ss_pred cCCCCCCCeecccchH
Q 027217 189 KYCCPICSKSVIDMSR 204 (226)
Q Consensus 189 ~~~CPiCrksi~dm~~ 204 (226)
.+.|++|.+++...+.
T Consensus 2 ~~~C~~C~k~f~~~~~ 17 (29)
T 2m0f_A 2 PLKCRECGKQFTTSGN 17 (29)
T ss_dssp CEECTTTSCEESCHHH
T ss_pred CccCCCCCCccCChhH
Confidence 4789999999886554
No 141
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=36.97 E-value=11 Score=24.73 Aligned_cols=44 Identities=18% Similarity=0.404 Sum_probs=28.3
Q ss_pred CCCCCCccchhhcccCCcceeeeccCCccCHHHHHHHHhcCcCCCCCCCeecccc
Q 027217 148 SMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVIDM 202 (226)
Q Consensus 148 ~~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~dm 202 (226)
.....|+.|.+.+......+. .=|..+|..|| +|-.|++++.+.
T Consensus 9 ~~~~~C~~C~~~i~~~e~~~~--~~~~~~H~~CF---------~C~~C~~~L~~~ 52 (72)
T 3f6q_B 9 SASATCERCKGGFAPAEKIVN--SNGELYHEQCF---------VCAQCFQQFPEG 52 (72)
T ss_dssp CTTCBCTTTCCBCCTTCEEEE--ETTEEEETTTS---------SCTTTCCCCGGG
T ss_pred cCCccchhcCccccCCceEEE--eCcCeeCcCCC---------cccCCCCCCCCC
Confidence 345678889888665322222 23677888776 577788887653
No 142
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=36.78 E-value=17 Score=28.86 Aligned_cols=21 Identities=29% Similarity=0.923 Sum_probs=15.5
Q ss_pred cccCCC--CCC------CcceeecCcccc
Q 027217 78 AQVCTN--CGV------NMGEYFCDICKF 98 (226)
Q Consensus 78 ~~~C~~--Cg~------~f~~Y~C~~C~l 98 (226)
...||+ ||+ -++++||.+|.+
T Consensus 118 ~~~c~~~~cg~g~fma~h~~r~~cgkc~~ 146 (152)
T 3u5c_f 118 RRECSNPTCGAGVFLANHKDRLYCGKCHS 146 (152)
T ss_dssp SCBCCSTTSCSSSBEEECSSCEEESSSSS
T ss_pred cCcCCCccCCCceEecccCCCcccCCCce
Confidence 468999 987 335788888864
No 143
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=36.72 E-value=22 Score=22.76 Aligned_cols=32 Identities=19% Similarity=0.132 Sum_probs=22.4
Q ss_pred CcCCCCCCCeecccchHHHHHHHHHHHhCCCC
Q 027217 188 DKYCCPICSKSVIDMSRTWKRIDEELQMNSSI 219 (226)
Q Consensus 188 ~~~~CPiCrksi~dm~~~~~~lD~~i~~~pm~ 219 (226)
..|.|++|.+.+...+.+.+.+-..-...|-|
T Consensus 36 ~~~~C~~C~~~f~~~~~L~~H~~~h~~~~p~p 67 (70)
T 1x5w_A 36 RPFKCNYCSFDTKQPSNLSKHMKKFHGDMSGP 67 (70)
T ss_dssp CSEECSSSSCEESSHHHHHHHHHHHHSSSCCS
T ss_pred CCEeCCCCCCccCCHHHHHHHHHHHhCCCCCC
Confidence 35899999999998776666665544444443
No 144
>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=36.55 E-value=17 Score=18.47 Aligned_cols=17 Identities=29% Similarity=0.661 Sum_probs=13.4
Q ss_pred cCCCCCCCeecccchHH
Q 027217 189 KYCCPICSKSVIDMSRT 205 (226)
Q Consensus 189 ~~~CPiCrksi~dm~~~ 205 (226)
.|.|++|.+++...+..
T Consensus 3 ~~~C~~C~~~f~~~~~l 19 (30)
T 2m0d_A 3 PYQCDYCGRSFSDPTSK 19 (30)
T ss_dssp CEECTTTCCEESCHHHH
T ss_pred CccCCCCCcccCCHHHH
Confidence 57899999999876543
No 145
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=35.95 E-value=6.1 Score=26.65 Aligned_cols=49 Identities=16% Similarity=0.479 Sum_probs=31.3
Q ss_pred CCCCCCccchhhcccCCcceeeeccCCccCHHHHHHHHh---cCcCCCCCCCeecc
Q 027217 148 SMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIK---RDKYCCPICSKSVI 200 (226)
Q Consensus 148 ~~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~---~~~~~CPiCrksi~ 200 (226)
..+..|.||.+. .+-+.--.|.-.||..|+..-+. .....||.|....+
T Consensus 7 ~~~~~C~vC~~~----g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~~ 58 (61)
T 1mm2_A 7 HHMEFCRVCKDG----GELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPAL 58 (61)
T ss_dssp SSCSSCTTTCCC----SSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTCC
T ss_pred CCCCcCCCCCCC----CCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCchh
Confidence 345668888753 22111225788999999985333 24678999986543
No 146
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=35.39 E-value=18 Score=23.89 Aligned_cols=37 Identities=24% Similarity=0.607 Sum_probs=22.8
Q ss_pred CCCccchhhcccCCcceeeeccCCccCHHHHHHHHhcCcCCCCCCCeecc
Q 027217 151 HHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVI 200 (226)
Q Consensus 151 ~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~ 200 (226)
..|+.|.+.+.. +.+.. =|..+|..|| +|-.|+++|.
T Consensus 6 ~~C~~C~~~I~~--~~~~a--~~~~~H~~CF---------~C~~C~~~L~ 42 (69)
T 2cur_A 6 SGCVKCNKAITS--GGITY--QDQPWHADCF---------VCVTCSKKLA 42 (69)
T ss_dssp CCCSSSCCCCCT--TCEEE--TTEEECTTTT---------BCTTTCCBCT
T ss_pred CCCcccCCEeCc--ceEEE--CccccccCcC---------EECCCCCCCC
Confidence 457777777653 22333 3677777765 5667777765
No 147
>3u5c_b RP61, YS20, 40S ribosomal protein S27-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_X 3u5g_b
Probab=34.85 E-value=24 Score=25.80 Aligned_cols=35 Identities=23% Similarity=0.353 Sum_probs=26.0
Q ss_pred ceeEeCCCCccccc------cccCCCCCCCcceeecCcccc
Q 027217 64 KQVICSVCDTEQPV------AQVCTNCGVNMGEYFCDICKF 98 (226)
Q Consensus 64 ~~v~Cg~C~~~q~v------~~~C~~Cg~~f~~Y~C~~C~l 98 (226)
-.|.|..|..+|.| ...|..||..+++-.=.+-+|
T Consensus 33 m~VkCp~C~~~q~VFSha~t~V~C~~Cg~~L~~PTGGKa~l 73 (82)
T 3u5c_b 33 LDVKCPGCLNITTVFSHAQTAVTCESCSTILCTPTGGKAKL 73 (82)
T ss_dssp EEEECTTSCSCEEEESBCSSCCCCSSSCCCCEECCSSBCEE
T ss_pred EEEECCCCCCeeEEEecCCeEEEccccCCEEeccCCCCeEe
Confidence 37999999999877 247999999887765444444
No 148
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=34.71 E-value=40 Score=19.49 Aligned_cols=22 Identities=18% Similarity=0.283 Sum_probs=16.1
Q ss_pred CcCCCCCCCeecccchHHHHHH
Q 027217 188 DKYCCPICSKSVIDMSRTWKRI 209 (226)
Q Consensus 188 ~~~~CPiCrksi~dm~~~~~~l 209 (226)
..|.|++|.+++...+..-+.+
T Consensus 11 k~~~C~~C~k~f~~~~~L~~H~ 32 (46)
T 2emz_A 11 RPFKCNECGKGFGRRSHLAGHL 32 (46)
T ss_dssp CSCCCSSSCCCCSSHHHHHHHH
T ss_pred CCeECCCCCcccCCHHHHHHHH
Confidence 4689999999998766544443
No 149
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=34.64 E-value=15 Score=26.66 Aligned_cols=32 Identities=28% Similarity=0.664 Sum_probs=22.0
Q ss_pred cccCCCCCCCcceeecCccccccCCCCCCeeccCCCCcceeCC
Q 027217 78 AQVCTNCGVNMGEYFCDICKFYDDDIEKGQFHCDDCGICRIGG 120 (226)
Q Consensus 78 ~~~C~~Cg~~f~~Y~C~~C~l~dd~~~k~~yHC~~CgiCR~G~ 120 (226)
.-.||+||... +| ++...+++|+.||-=-.||
T Consensus 27 ~y~Cp~CG~~~---------v~--r~atGiW~C~~Cg~~~agg 58 (83)
T 1vq8_Z 27 DHACPNCGEDR---------VD--RQGTGIWQCSYCDYKFTGG 58 (83)
T ss_dssp CEECSSSCCEE---------EE--EEETTEEEETTTCCEEECC
T ss_pred cCcCCCCCCcc---------ee--ccCCCeEECCCCCCEecCC
Confidence 34677777643 12 3456799999999887776
No 150
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=34.63 E-value=12 Score=28.24 Aligned_cols=10 Identities=20% Similarity=0.644 Sum_probs=5.1
Q ss_pred eeEeCCCCcc
Q 027217 65 QVICSVCDTE 74 (226)
Q Consensus 65 ~v~Cg~C~~~ 74 (226)
...|..|+.+
T Consensus 73 ~~~C~~CG~~ 82 (119)
T 2kdx_A 73 ELECKDCSHV 82 (119)
T ss_dssp EEECSSSSCE
T ss_pred eEEcCCCCCE
Confidence 4555555544
No 151
>3j20_W 30S ribosomal protein S27E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=34.32 E-value=16 Score=25.40 Aligned_cols=35 Identities=29% Similarity=0.370 Sum_probs=24.8
Q ss_pred ceeEeCCCCccccc------cccCCCCCCCcceeecCcccc
Q 027217 64 KQVICSVCDTEQPV------AQVCTNCGVNMGEYFCDICKF 98 (226)
Q Consensus 64 ~~v~Cg~C~~~q~v------~~~C~~Cg~~f~~Y~C~~C~l 98 (226)
-.|.|..|.++|.+ ...|..||..+++-.=.+-+|
T Consensus 14 m~VkCp~C~~~q~VFSha~t~V~C~~Cgt~L~~PTGGKa~l 54 (63)
T 3j20_W 14 LRVKCIDCGNEQIVFSHPATKVRCLICGATLVEPTGGKGIV 54 (63)
T ss_dssp EEEECSSSCCEEEEESSCSSCEECSSSCCEEEECCSSSCEE
T ss_pred EEEECCCCCCeeEEEecCCeEEEccCcCCEEecCCCCcEEE
Confidence 36889999998877 236888888887655444443
No 152
>3gox_A Restriction endonuclease HPY99I; endonuclease-DNA complex, restriction enzyme, HPY99I, pseudopalindrome; HET: 1PE; 1.50A {Helicobacter pylori} PDB: 3fc3_A*
Probab=33.27 E-value=43 Score=28.19 Aligned_cols=73 Identities=19% Similarity=0.278 Sum_probs=47.8
Q ss_pred eeCCccceeeccccCccccccccCcceeecCC---CCCCCccchhhcccCCcceeeeccCCccCHHHHHHHHhcCc----
Q 027217 117 RIGGRENYFHCKRCGSCYSTSLRNNHLCIENS---MHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDK---- 189 (226)
Q Consensus 117 R~G~~~~~fHC~~C~~C~s~~l~~~H~C~e~~---~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~~---- 189 (226)
+.|.+.....|.+|+.=.+.+.+...+=.... ....|.-|.-.+ ....+. ..=++++++.+.
T Consensus 68 ~~~~~~G~K~C~~Cg~~Kp~seF~rnkt~~DG~~~l~s~CkeC~~~l--r~YGIT---------~eey~~L~e~Qg~~~~ 136 (200)
T 3gox_A 68 RTGKGYDKKICNICHILKNTDGFEINQTDAKGRKTTRPSCRECRKNI--DGVKLS---------STEKKKMDEIAPPKGS 136 (200)
T ss_dssp GSSTTSSEEECTTTCBEEEGGGSCEEEECTTSCEEECSSCHHHHHHH--HCSCCC---------HHHHHHHHTTCCCTTC
T ss_pred eccccCCCeECCCCCCCcchhhhcccccCCCCCcccCccChhhhhcc--CCcCCC---------HHHHHHHHHHcccCCC
Confidence 77888899999999997776665444433333 567899997643 122221 112555666555
Q ss_pred -CCCCCCCeecc
Q 027217 190 -YCCPICSKSVI 200 (226)
Q Consensus 190 -~~CPiCrksi~ 200 (226)
.+||||++...
T Consensus 137 ~G~C~ICg~~~~ 148 (200)
T 3gox_A 137 VFTCPICEKRSI 148 (200)
T ss_dssp EEECTTTCCEEE
T ss_pred CCcCcCCCCCCC
Confidence 78999998775
No 153
>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=33.13 E-value=20 Score=19.25 Aligned_cols=18 Identities=28% Similarity=0.711 Sum_probs=14.1
Q ss_pred CcCCCCCCCeecccchHH
Q 027217 188 DKYCCPICSKSVIDMSRT 205 (226)
Q Consensus 188 ~~~~CPiCrksi~dm~~~ 205 (226)
..|.|++|.+++...+..
T Consensus 6 k~~~C~~C~k~f~~~~~L 23 (35)
T 2elx_A 6 SGYVCALCLKKFVSSIRL 23 (35)
T ss_dssp CSEECSSSCCEESSHHHH
T ss_pred CCeECCCCcchhCCHHHH
Confidence 468999999999875543
No 154
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=33.08 E-value=14 Score=27.68 Aligned_cols=14 Identities=14% Similarity=-0.038 Sum_probs=7.7
Q ss_pred CCccCHHHHHHHHh
Q 027217 173 GHTMHCECYHEMIK 186 (226)
Q Consensus 173 GH~~H~~C~~~~l~ 186 (226)
|..+...|+.+++.
T Consensus 57 g~~yC~~cy~~~~~ 70 (123)
T 2l3k_A 57 SDIVCEQDIYEWTK 70 (123)
T ss_dssp SSEEEGGGHHHHHH
T ss_pred CEEEcHHHhHHHhc
Confidence 55555566655543
No 155
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=33.08 E-value=18 Score=24.68 Aligned_cols=39 Identities=21% Similarity=0.604 Sum_probs=26.5
Q ss_pred CCCCccchhhcccCCcceeeeccCCccCHHHHHHHHhcCcCCCCCCCeeccc
Q 027217 150 HHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVID 201 (226)
Q Consensus 150 ~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~d 201 (226)
...|+.|.+.+.+ +.+.. =|..+|..|| +|-.|++.|.+
T Consensus 15 ~~~C~~C~~~I~~--~~v~a--~~~~wH~~CF---------~C~~C~~~L~~ 53 (81)
T 1v6g_A 15 GTRCFSCDQFIEG--EVVSA--LGKTYHPDCF---------VCAVCRLPFPP 53 (81)
T ss_dssp CCBCTTTCCBCCS--CCEEE--TTEEECTTTS---------SCSSSCCCCCS
T ss_pred CCcCccccCEecc--ceEEE--CCceeCccCC---------ccccCCCCCCC
Confidence 3478899988663 23333 4788898776 57778888764
No 156
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=33.05 E-value=38 Score=19.66 Aligned_cols=22 Identities=27% Similarity=0.362 Sum_probs=15.7
Q ss_pred CcCCCCCCCeecccchHHHHHH
Q 027217 188 DKYCCPICSKSVIDMSRTWKRI 209 (226)
Q Consensus 188 ~~~~CPiCrksi~dm~~~~~~l 209 (226)
..|.|++|.+++...+..-+.+
T Consensus 11 k~~~C~~C~k~f~~~~~L~~H~ 32 (46)
T 2ytm_A 11 KPYKCMECGKAFGDNSSCTQHQ 32 (46)
T ss_dssp CSSSBTTTTBCCSSHHHHHHHH
T ss_pred CCcCCCCCCchhCCHHHHHHHH
Confidence 4688999999988766544443
No 157
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=32.91 E-value=8.8 Score=25.22 Aligned_cols=38 Identities=26% Similarity=0.543 Sum_probs=23.5
Q ss_pred CCCccchhhcccCCcceeeeccCCccCHHHHHHHHhcCcCCCCCCCeeccc
Q 027217 151 HHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVID 201 (226)
Q Consensus 151 ~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~d 201 (226)
..|+.|.+.+.+ +. +..=|..+|..|| +|-.|+++|.+
T Consensus 6 ~~C~~C~~~I~~--~~--~~a~~~~~H~~CF---------~C~~C~~~L~~ 43 (66)
T 1nyp_A 6 PICGACRRPIEG--RV--VNAMGKQWHVEHF---------VCAKCEKPFLG 43 (66)
T ss_dssp CEETTTTEECCS--CE--ECCTTSBEETTTC---------BCTTTCCBCSS
T ss_pred CCCcccCCEecc--eE--EEECccccccCcC---------EECCCCCCCCC
Confidence 457777777652 22 2233677787665 57778777754
No 158
>2ayj_A 50S ribosomal protein L40E; Zn-binding, beta-strand protein, structural genomics, PSI, protein structure initiative; NMR {Sulfolobus solfataricus} SCOP: g.41.8.7
Probab=31.80 E-value=35 Score=23.19 Aligned_cols=26 Identities=23% Similarity=0.645 Sum_probs=21.0
Q ss_pred ccceeEeCCCCccccc-cccCCCCCCC
Q 027217 62 DVKQVICSVCDTEQPV-AQVCTNCGVN 87 (226)
Q Consensus 62 ~~~~v~Cg~C~~~q~v-~~~C~~Cg~~ 87 (226)
....++|+.|+...++ +..|..||..
T Consensus 16 ~~~k~ICrkC~ARnp~~A~~CRKCg~~ 42 (56)
T 2ayj_A 16 VFLKKVCRKCGALNPIRATKCRRCHST 42 (56)
T ss_dssp SCCCEEETTTCCEECTTCSSCTTTCCC
T ss_pred HhchhhhccccCcCCcccccccCCCCC
Confidence 3468999999999888 5789888854
No 159
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=37.57 E-value=10 Score=19.18 Aligned_cols=15 Identities=33% Similarity=0.791 Sum_probs=11.5
Q ss_pred cCCCCCCCeecccch
Q 027217 189 KYCCPICSKSVIDMS 203 (226)
Q Consensus 189 ~~~CPiCrksi~dm~ 203 (226)
.|.|++|.+++...+
T Consensus 2 p~~C~~C~k~f~~~~ 16 (26)
T 2lvu_A 2 PYVCERCGKRFVQSS 16 (26)
Confidence 378999999887544
No 160
>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=31.23 E-value=22 Score=19.39 Aligned_cols=17 Identities=24% Similarity=0.456 Sum_probs=13.5
Q ss_pred CcCCCCCCCeecccchH
Q 027217 188 DKYCCPICSKSVIDMSR 204 (226)
Q Consensus 188 ~~~~CPiCrksi~dm~~ 204 (226)
..|.|++|.+++...+.
T Consensus 8 k~~~C~~C~k~f~~~~~ 24 (36)
T 2elv_A 8 LLYDCHICERKFKNELD 24 (36)
T ss_dssp CCEECSSSCCEESSHHH
T ss_pred CCeECCCCCCccCCHHH
Confidence 46899999999987554
No 161
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=30.97 E-value=31 Score=19.40 Aligned_cols=20 Identities=25% Similarity=0.587 Sum_probs=15.1
Q ss_pred CcCCCCCCCeecccchHHHH
Q 027217 188 DKYCCPICSKSVIDMSRTWK 207 (226)
Q Consensus 188 ~~~~CPiCrksi~dm~~~~~ 207 (226)
..|.|++|.+++...+..-+
T Consensus 9 k~~~C~~C~k~f~~~~~L~~ 28 (42)
T 2yte_A 9 KPYSCAECKETFSDNNRLVQ 28 (42)
T ss_dssp CSCBCTTTCCBCSSHHHHHH
T ss_pred CCeECCCCCCccCCHHHHHH
Confidence 46899999999987654333
No 162
>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=30.92 E-value=23 Score=19.39 Aligned_cols=18 Identities=33% Similarity=0.778 Sum_probs=14.1
Q ss_pred CcCCCCCCCeecccchHH
Q 027217 188 DKYCCPICSKSVIDMSRT 205 (226)
Q Consensus 188 ~~~~CPiCrksi~dm~~~ 205 (226)
..|.|++|.+++...+..
T Consensus 8 k~~~C~~C~k~f~~~~~l 25 (37)
T 2elo_A 8 RSYSCPVCEKSFSEDRLI 25 (37)
T ss_dssp CCCEETTTTEECSSHHHH
T ss_pred CCcCCCCCCCccCCHHHH
Confidence 468999999999875543
No 163
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=30.84 E-value=23 Score=19.31 Aligned_cols=18 Identities=17% Similarity=0.340 Sum_probs=13.9
Q ss_pred CcCCCCCCCeecccchHH
Q 027217 188 DKYCCPICSKSVIDMSRT 205 (226)
Q Consensus 188 ~~~~CPiCrksi~dm~~~ 205 (226)
..|.|++|.+++...+..
T Consensus 8 k~~~C~~C~k~f~~~~~l 25 (36)
T 2els_A 8 KIFTCEYCNKVFKFKHSL 25 (36)
T ss_dssp CCEECTTTCCEESSHHHH
T ss_pred CCEECCCCCceeCCHHHH
Confidence 468899999999865543
No 164
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=30.62 E-value=13 Score=26.30 Aligned_cols=65 Identities=20% Similarity=0.543 Sum_probs=34.8
Q ss_pred cceeeccccCccccccccCcceeecCCCCCCCccchhhcccCCcceeeeccCCccCHHHHHHHHh---cC-cCCCCCCCe
Q 027217 122 ENYFHCKRCGSCYSTSLRNNHLCIENSMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIK---RD-KYCCPICSK 197 (226)
Q Consensus 122 ~~~fHC~~C~~C~s~~l~~~H~C~e~~~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~---~~-~~~CPiCrk 197 (226)
.+...|..|+. ...-.|. +..|.||... .+..+-+.-=.|.-.||..|+..=|. .. ...||.|..
T Consensus 8 ~~~~~c~~C~~------~~~w~C~----~c~C~vC~~~-~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 8 RNDTECDLCGG------DPEKKCH----SCSCRVCGGK-HEPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp CCCCCCTTTCS------CSSSCCS----SSSCSSSCCC-CCSTTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred cCCccChhhcC------CCCeECC----CCCCcCcCCc-CCCCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 45666666653 1223333 2368888753 11111111115788899999874332 13 567888864
No 165
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=30.18 E-value=14 Score=24.34 Aligned_cols=38 Identities=29% Similarity=0.632 Sum_probs=24.8
Q ss_pred CCccchhhcccCCcceeeeccCCccC--HHHHHHHHhcCcCCCCCCCeecc
Q 027217 152 HCPICYEYLFDSLRNTTVMKCGHTMH--CECYHEMIKRDKYCCPICSKSVI 200 (226)
Q Consensus 152 ~CpICle~lf~s~~~v~~LpCGH~~H--~~C~~~~l~~~~~~CPiCrksi~ 200 (226)
.|+.|.+.+....+.+..+ |..+| ..|| +|-.|+++|.
T Consensus 4 ~C~~C~~~I~~~~~~v~a~--~~~wH~~~~CF---------~C~~C~~~L~ 43 (65)
T 2iyb_E 4 VCQGCHNAIDPEVQRVTYN--NFSWHASTECF---------LCSCCSKCLI 43 (65)
T ss_dssp ECTTTSSEECTTSCEEEET--TEEEETTTTTS---------BCTTTCCBCT
T ss_pred CCcCCCCeeccCceEEEEC--CCccCCCCCCE---------ECCCCCCcCC
Confidence 4778888766433334333 78888 7775 5667877775
No 166
>3a7q_B Low-density lipoprotein receptor-related protein; signaling protein; HET: NAG; 2.60A {Homo sapiens}
Probab=29.87 E-value=41 Score=20.96 Aligned_cols=31 Identities=26% Similarity=0.807 Sum_probs=22.0
Q ss_pred ceeeccccCcccccccc--CcceeecCCCCCCCc
Q 027217 123 NYFHCKRCGSCYSTSLR--NNHLCIENSMHHHCP 154 (226)
Q Consensus 123 ~~fHC~~C~~C~s~~l~--~~H~C~e~~~~~~Cp 154 (226)
+.|.|.. +.|++..+. +..-|..++.+.+|+
T Consensus 11 ~~f~C~~-g~CI~~~~~CDg~~DC~DgSDE~~C~ 43 (44)
T 3a7q_B 11 DQFQCRN-ERCIPSVWRCDEDDDCLDHSDEDDCP 43 (44)
T ss_dssp TEEECTT-SCEEEGGGTTSSSCCSSSSTTTSCC-
T ss_pred CceEcCC-CCEeChhhccCCCCCCCCCccccCCC
Confidence 5788887 888888765 556666777777775
No 167
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=29.85 E-value=44 Score=24.77 Aligned_cols=49 Identities=14% Similarity=0.085 Sum_probs=32.5
Q ss_pred CCccchhhcccCCcceeeeccCCccCHHHHHHHHhcCcCCCCCCCeecccc
Q 027217 152 HCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVIDM 202 (226)
Q Consensus 152 ~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~dm 202 (226)
.|..|...|-+.. ..-...=|-.+...|+.+.+.. ..+|-.|++.|...
T Consensus 34 ~C~~C~~~L~~~~-~~~~~~~g~~yC~~cy~~~f~~-~~~C~~C~~~I~~~ 82 (122)
T 1m3v_A 34 KCSSCQAQLGDIG-TSSYTKSGMILCRNDYIRLFGN-SGAGGSGGHMGSGG 82 (122)
T ss_dssp CCSSSCCCTTTSE-ECCEEETTEEECHHHHHHHHCC-CCSSSCSSCCSCCE
T ss_pred CcCCCCCcccccC-CeEEEECCeeecHHHHHHHcCC-CCccccCCCCcCch
Confidence 5778877764211 1123345778889999887642 34899999999863
No 168
>1ajj_A LR5, low-density lipoprotein receptor; LDL receptor, cysteine-rich module, calcium; 1.70A {Homo sapiens} SCOP: g.12.1.1
Probab=29.80 E-value=33 Score=20.54 Aligned_cols=31 Identities=32% Similarity=0.679 Sum_probs=18.8
Q ss_pred ceeeccccCcccccccc--CcceeecCCCCCCCc
Q 027217 123 NYFHCKRCGSCYSTSLR--NNHLCIENSMHHHCP 154 (226)
Q Consensus 123 ~~fHC~~C~~C~s~~l~--~~H~C~e~~~~~~Cp 154 (226)
+.|.|.. |.|++.++. +.--|..++.+.+||
T Consensus 5 ~~f~C~~-g~Ci~~~~~CDg~~DC~DgsDE~~C~ 37 (37)
T 1ajj_A 5 FEFHCLS-GECIHSSWRCDGGPDCKDKSDEENCA 37 (37)
T ss_dssp TCEECTT-SCEECGGGTTSSSCCSTTCGGGTTCC
T ss_pred CceEcCC-CCeechhhccCCCCCCCCCccccCCC
Confidence 4566765 677776654 444555566666664
No 169
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=29.75 E-value=24 Score=19.04 Aligned_cols=18 Identities=28% Similarity=0.517 Sum_probs=13.8
Q ss_pred CcCCCCCCCeecccchHH
Q 027217 188 DKYCCPICSKSVIDMSRT 205 (226)
Q Consensus 188 ~~~~CPiCrksi~dm~~~ 205 (226)
..|.|++|.+++...+..
T Consensus 8 k~~~C~~C~k~f~~~~~l 25 (36)
T 2elt_A 8 KPYKCPQCSYASAIKANL 25 (36)
T ss_dssp CSEECSSSSCEESSHHHH
T ss_pred CCCCCCCCCcccCCHHHH
Confidence 468999999999865543
No 170
>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}
Probab=29.73 E-value=39 Score=20.31 Aligned_cols=20 Identities=15% Similarity=0.380 Sum_probs=14.8
Q ss_pred CcCCCCCCCeecccchHHHH
Q 027217 188 DKYCCPICSKSVIDMSRTWK 207 (226)
Q Consensus 188 ~~~~CPiCrksi~dm~~~~~ 207 (226)
..+.||+|.+++...+...+
T Consensus 31 ~~~~C~~C~~~f~~~~~l~~ 50 (57)
T 3uk3_C 31 KPYKCEFCEYAAAQKTSLRY 50 (57)
T ss_dssp CCEECSSSSCEESSHHHHHH
T ss_pred CCcCCCCCcchhCCHHHHHH
Confidence 46889999999887655433
No 171
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=29.72 E-value=24 Score=19.19 Aligned_cols=18 Identities=17% Similarity=0.473 Sum_probs=14.0
Q ss_pred CcCCCCCCCeecccchHH
Q 027217 188 DKYCCPICSKSVIDMSRT 205 (226)
Q Consensus 188 ~~~~CPiCrksi~dm~~~ 205 (226)
..|.|++|.+++...+..
T Consensus 8 k~~~C~~C~k~f~~~~~l 25 (36)
T 2elq_A 8 KPFKCSLCEYATRSKSNL 25 (36)
T ss_dssp CSEECSSSSCEESCHHHH
T ss_pred CCccCCCCCchhCCHHHH
Confidence 468999999999876543
No 172
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=29.57 E-value=30 Score=22.02 Aligned_cols=10 Identities=20% Similarity=0.654 Sum_probs=4.6
Q ss_pred cCCCCCCCcc
Q 027217 80 VCTNCGVNMG 89 (226)
Q Consensus 80 ~C~~Cg~~f~ 89 (226)
.|+.||..|.
T Consensus 16 ~C~~C~k~F~ 25 (62)
T 1vd4_A 16 KCPVCSSTFT 25 (62)
T ss_dssp ECSSSCCEEE
T ss_pred cCCCCCchhc
Confidence 3444554443
No 173
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.27 E-value=28 Score=23.53 Aligned_cols=38 Identities=21% Similarity=0.473 Sum_probs=24.0
Q ss_pred CCCCccchhhcccCCcceeeeccCCccCHHHHHHHHhcCcCCCCCCCeecc
Q 027217 150 HHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVI 200 (226)
Q Consensus 150 ~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~ 200 (226)
...|+.|.+.+.. +.+ ..=|..+|..|| +|-.|+++|.
T Consensus 15 ~~~C~~C~~~I~~--~~v--~a~~~~~H~~CF---------~C~~C~~~L~ 52 (80)
T 2cuq_A 15 APRCARCSKTLTQ--GGV--TYRDQPWHRECL---------VCTGCQTPLA 52 (80)
T ss_dssp SCCCTTTCCCCCS--CCE--ESSSSEECTTTC---------BCSSSCCBCT
T ss_pred CCcCCCCCCEecC--cEE--EECCchhhhhhC---------CcccCCCcCC
Confidence 3568888877654 222 233778887765 5667777774
No 174
>3iz6_X 40S ribosomal protein S27 (S27E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=29.25 E-value=30 Score=25.51 Aligned_cols=35 Identities=20% Similarity=0.360 Sum_probs=25.3
Q ss_pred eeEeCCCCccccc------cccCCCCCCCcceeecCccccc
Q 027217 65 QVICSVCDTEQPV------AQVCTNCGVNMGEYFCDICKFY 99 (226)
Q Consensus 65 ~v~Cg~C~~~q~v------~~~C~~Cg~~f~~Y~C~~C~l~ 99 (226)
.|.|..|..+|.+ ...|..||..+++-.=.+-+|-
T Consensus 36 ~VkCp~C~~~~~VFShA~t~V~C~~CgtvL~~PTGGKa~l~ 76 (86)
T 3iz6_X 36 DVKCQGCFNITTVFSHSQTVVVCPGCQTVLCQPTGGKARLT 76 (86)
T ss_dssp EEECTTTCCEEEEETTCSSCCCCSSSCCCCSCCCSSSCCCS
T ss_pred EEECCCCCCeeEEEecCCcEEEccCCCCEeecCCCCCEEec
Confidence 5889999988877 2478888888877654444443
No 175
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=35.35 E-value=12 Score=19.36 Aligned_cols=16 Identities=25% Similarity=0.555 Sum_probs=12.1
Q ss_pred cCCCCCCCeecccchH
Q 027217 189 KYCCPICSKSVIDMSR 204 (226)
Q Consensus 189 ~~~CPiCrksi~dm~~ 204 (226)
.|.|++|.+++...+.
T Consensus 2 ~~~C~~C~k~f~~~~~ 17 (29)
T 2lvt_A 2 PCQCVMCGKAFTQASS 17 (29)
Confidence 3789999998876543
No 176
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=29.11 E-value=36 Score=19.60 Aligned_cols=20 Identities=25% Similarity=0.514 Sum_probs=15.3
Q ss_pred CcCCCCCCCeecccchHHHH
Q 027217 188 DKYCCPICSKSVIDMSRTWK 207 (226)
Q Consensus 188 ~~~~CPiCrksi~dm~~~~~ 207 (226)
..|.|++|.+++...+...+
T Consensus 11 k~~~C~~C~k~F~~~~~L~~ 30 (47)
T 2epx_A 11 KPYECIECGKAFIQNTSLIR 30 (47)
T ss_dssp CSBCCSSSCCCBSSHHHHHH
T ss_pred CCEECCccCchhCChHHHHH
Confidence 46899999999987665443
No 177
>2xzm_6 RPS27E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_6
Probab=28.82 E-value=22 Score=25.88 Aligned_cols=36 Identities=17% Similarity=0.392 Sum_probs=25.1
Q ss_pred ceeEeCCCCccccc------cccCCCCCCCcceeecCccccc
Q 027217 64 KQVICSVCDTEQPV------AQVCTNCGVNMGEYFCDICKFY 99 (226)
Q Consensus 64 ~~v~Cg~C~~~q~v------~~~C~~Cg~~f~~Y~C~~C~l~ 99 (226)
-.|.|..|..+|.| ...|..||..+++-.=.+-+|-
T Consensus 31 m~VkCp~C~n~q~VFShA~t~V~C~~Cg~~L~~PTGGKA~l~ 72 (81)
T 2xzm_6 31 MDVKCAQCQNIQMIFSNAQSTIICEKCSAILCKPTGGKVQIQ 72 (81)
T ss_dssp EEEECSSSCCEEEEETTCSSCEECSSSCCEEEEECSSCEEEC
T ss_pred EEeECCCCCCeeEEEecCccEEEccCCCCEEeecCCCCeEec
Confidence 37888889888877 2368888888876654444443
No 178
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=28.66 E-value=40 Score=19.08 Aligned_cols=20 Identities=25% Similarity=0.398 Sum_probs=15.2
Q ss_pred CcCCCCCCCeecccchHHHH
Q 027217 188 DKYCCPICSKSVIDMSRTWK 207 (226)
Q Consensus 188 ~~~~CPiCrksi~dm~~~~~ 207 (226)
..|.|++|.+++...+...+
T Consensus 11 k~~~C~~C~k~f~~~~~L~~ 30 (44)
T 2en7_A 11 KPYVCNECGKAFRSKSYLII 30 (44)
T ss_dssp SSSCCTTTCCCCSSHHHHHH
T ss_pred cCeECCCCCCccCCHHHHHH
Confidence 46899999999987654433
No 179
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}
Probab=34.66 E-value=12 Score=19.24 Aligned_cols=16 Identities=25% Similarity=0.623 Sum_probs=12.4
Q ss_pred cCCCCCCCeecccchH
Q 027217 189 KYCCPICSKSVIDMSR 204 (226)
Q Consensus 189 ~~~CPiCrksi~dm~~ 204 (226)
.|.|++|.+++...+.
T Consensus 3 ~~~C~~C~k~f~~~~~ 18 (30)
T 2lvr_A 3 PYVCIHCQRQFADPGA 18 (30)
Confidence 4789999998876544
No 180
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=28.47 E-value=27 Score=24.49 Aligned_cols=7 Identities=57% Similarity=1.578 Sum_probs=3.8
Q ss_pred ccCCCCc
Q 027217 109 HCDDCGI 115 (226)
Q Consensus 109 HC~~Cgi 115 (226)
+|+.||-
T Consensus 47 rCp~CG~ 53 (70)
T 1twf_L 47 RCKDCGH 53 (70)
T ss_dssp CCSSSCC
T ss_pred cCCCCCc
Confidence 5555553
No 181
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1
Probab=28.43 E-value=30 Score=18.58 Aligned_cols=18 Identities=17% Similarity=0.527 Sum_probs=14.0
Q ss_pred CcCCCCCCCeecccchHH
Q 027217 188 DKYCCPICSKSVIDMSRT 205 (226)
Q Consensus 188 ~~~~CPiCrksi~dm~~~ 205 (226)
..|.|++|.+++...+..
T Consensus 6 k~~~C~~C~k~f~~~~~l 23 (35)
T 1srk_A 6 RPFVCRICLSAFTTKANC 23 (35)
T ss_dssp SCEECSSSCCEESSHHHH
T ss_pred cCeeCCCCCcccCCHHHH
Confidence 468999999999875543
No 182
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.19 E-value=18 Score=23.84 Aligned_cols=37 Identities=24% Similarity=0.544 Sum_probs=19.6
Q ss_pred CCCccchhhcccCCcceeeeccCCccCHHHHHHHHhcCcCCCCCCCeecc
Q 027217 151 HHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVI 200 (226)
Q Consensus 151 ~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~ 200 (226)
..|+.|.+.+.+ +.+. .=|..+|..|| +|-.|+++|.
T Consensus 6 ~~C~~C~~~I~~--~~~~--a~~~~~H~~CF---------~C~~C~~~L~ 42 (70)
T 2d8z_A 6 SGCVQCKKPITT--GGVT--YREQPWHKECF---------VCTACRKQLS 42 (70)
T ss_dssp CBCSSSCCBCCS--SEEE--SSSSEEETTTS---------BCSSSCCBCT
T ss_pred CCCcccCCeecc--ceEE--ECccccCCCCC---------ccCCCCCcCC
Confidence 346666666543 1222 23666666654 4556666654
No 183
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=28.05 E-value=26 Score=19.72 Aligned_cols=18 Identities=22% Similarity=0.506 Sum_probs=14.2
Q ss_pred CcCCCCCCCeecccchHH
Q 027217 188 DKYCCPICSKSVIDMSRT 205 (226)
Q Consensus 188 ~~~~CPiCrksi~dm~~~ 205 (226)
..|.|++|.+++...+..
T Consensus 10 k~~~C~~C~k~f~~~~~L 27 (42)
T 2ytb_A 10 KPYRCDQCGKAFSQKGSL 27 (42)
T ss_dssp CSBCCTTTTCCBSSHHHH
T ss_pred CCeeCCCccchhCCHHHH
Confidence 468999999999876543
No 184
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=27.95 E-value=35 Score=22.30 Aligned_cols=34 Identities=21% Similarity=0.602 Sum_probs=15.4
Q ss_pred cCCCCCCCcceeecCccccccCCCCCCeeccCCCC
Q 027217 80 VCTNCGVNMGEYFCDICKFYDDDIEKGQFHCDDCG 114 (226)
Q Consensus 80 ~C~~Cg~~f~~Y~C~~C~l~dd~~~k~~yHC~~Cg 114 (226)
.|+.||..-+.|+=..=+ =.|++..-.|.|..||
T Consensus 17 ~Cp~Cg~~~~~~~q~Q~r-sadep~T~fy~C~~Cg 50 (57)
T 1qyp_A 17 TCPKCGNDTAYWWEMQTR-AGDEPSTIFYKCTKCG 50 (57)
T ss_dssp CCTTTCCSEEEEEEECCS-SSSCSSEEEEEESSSC
T ss_pred ECCCCCCCEEEEEEeecc-cCCCCCcEEEEcCCCC
Confidence 566676655555400000 0223444455665555
No 185
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=27.87 E-value=40 Score=19.49 Aligned_cols=22 Identities=23% Similarity=0.412 Sum_probs=15.7
Q ss_pred CcCCCCCCCeecccchHHHHHH
Q 027217 188 DKYCCPICSKSVIDMSRTWKRI 209 (226)
Q Consensus 188 ~~~~CPiCrksi~dm~~~~~~l 209 (226)
..|.|++|.+++...+..-+.+
T Consensus 11 k~~~C~~C~k~F~~~~~L~~H~ 32 (46)
T 2eoo_A 11 RPYGCNECGKNFGRHSHLIEHL 32 (46)
T ss_dssp CCEECSSSCCEESSHHHHHHHH
T ss_pred CCEEccccCcccCCHHHHHHHH
Confidence 4588999999998766544443
No 186
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.85 E-value=23 Score=24.19 Aligned_cols=37 Identities=24% Similarity=0.721 Sum_probs=22.7
Q ss_pred CCCccchhhcccCCcceeeeccCCccCHHHHHHHHhcCcCCCCCCCeecc
Q 027217 151 HHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVI 200 (226)
Q Consensus 151 ~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~ 200 (226)
..|+.|.+.+.+ +.+. .=|..+|..|| +|..|+++|.
T Consensus 16 ~~C~~C~~~I~~--~~~~--a~~~~~H~~CF---------~C~~C~~~L~ 52 (81)
T 2dlo_A 16 EKCATCSQPILD--RILR--AMGKAYHPGCF---------TCVVCHRGLD 52 (81)
T ss_dssp CBCTTTCCBCCS--CCEE--ETTEEECTTTC---------BCSSSCCBCT
T ss_pred CccccCCCeecc--eeEE--ECCccccHHhc---------CcccCCCccC
Confidence 467777777653 2222 23677777665 5667777765
No 187
>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.78 E-value=45 Score=19.05 Aligned_cols=21 Identities=19% Similarity=0.200 Sum_probs=15.5
Q ss_pred CcCCCCCCCeecccchHHHHH
Q 027217 188 DKYCCPICSKSVIDMSRTWKR 208 (226)
Q Consensus 188 ~~~~CPiCrksi~dm~~~~~~ 208 (226)
..+.|++|.+++...+..-+.
T Consensus 11 ~~~~C~~C~k~f~~~~~L~~H 31 (44)
T 2eou_A 11 TTSECQECGKIFRHSSLLIEH 31 (44)
T ss_dssp CCCCCTTTCCCCSSHHHHHHH
T ss_pred cCeECCCCCcccCCHHHHHHH
Confidence 468999999999876554333
No 188
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=27.74 E-value=41 Score=23.76 Aligned_cols=21 Identities=14% Similarity=0.578 Sum_probs=11.3
Q ss_pred cceeCC-ccceeeccccCcccc
Q 027217 115 ICRIGG-RENYFHCKRCGSCYS 135 (226)
Q Consensus 115 iCR~G~-~~~~fHC~~C~~C~s 135 (226)
||+.++ .+....|+.|..-+-
T Consensus 31 vC~~~~d~~~ll~CD~C~~~yH 52 (77)
T 3shb_A 31 LCGGRQDPDKQLMCDECDMAFH 52 (77)
T ss_dssp TTCCCSCGGGEEECTTTCCEEE
T ss_pred ccCCCCCCcceeEeCCCCCccC
Confidence 444443 245677777765443
No 189
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=27.61 E-value=34 Score=22.73 Aligned_cols=8 Identities=25% Similarity=0.522 Sum_probs=4.3
Q ss_pred CCCccchh
Q 027217 151 HHCPICYE 158 (226)
Q Consensus 151 ~~CpICle 158 (226)
-.|+-|..
T Consensus 53 W~C~~C~~ 60 (66)
T 2yt5_A 53 WLCRQCVF 60 (66)
T ss_dssp CCCHHHHH
T ss_pred EECCCCcC
Confidence 44666654
No 190
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.60 E-value=32 Score=19.49 Aligned_cols=17 Identities=24% Similarity=0.634 Sum_probs=13.9
Q ss_pred CcCCCCCCCeecccchH
Q 027217 188 DKYCCPICSKSVIDMSR 204 (226)
Q Consensus 188 ~~~~CPiCrksi~dm~~ 204 (226)
..|.|++|.+++...+.
T Consensus 10 k~~~C~~C~k~f~~~~~ 26 (42)
T 2eos_A 10 KPYPCEICGTRFRHLQT 26 (42)
T ss_dssp CCBCCSSSCCCBSSHHH
T ss_pred CCEECCCCCCccCCHHH
Confidence 46899999999987654
No 191
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=27.59 E-value=41 Score=19.40 Aligned_cols=21 Identities=33% Similarity=0.588 Sum_probs=15.9
Q ss_pred CcCCCCCCCeecccchHHHHH
Q 027217 188 DKYCCPICSKSVIDMSRTWKR 208 (226)
Q Consensus 188 ~~~~CPiCrksi~dm~~~~~~ 208 (226)
..+.|++|.+++...+..-+.
T Consensus 11 ~~~~C~~C~k~f~~~~~L~~H 31 (46)
T 2eoq_A 11 KPFKCDICGKSFCGRSRLNRH 31 (46)
T ss_dssp CSCCCSSSCCCCSSHHHHHHH
T ss_pred CCcCCCcCCchhCCHHHHHHH
Confidence 468999999999876654443
No 192
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=27.56 E-value=31 Score=22.28 Aligned_cols=13 Identities=46% Similarity=1.464 Sum_probs=8.9
Q ss_pred cceeecCcccc-cc
Q 027217 88 MGEYFCDICKF-YD 100 (226)
Q Consensus 88 f~~Y~C~~C~l-~d 100 (226)
|.+|-|.+|-+ ||
T Consensus 2 m~~y~C~vCGyvyd 15 (46)
T 6rxn_A 2 MQKYVCNVCGYEYD 15 (46)
T ss_dssp CCCEEETTTCCEEC
T ss_pred CCEEECCCCCeEEe
Confidence 56778888864 44
No 193
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=27.37 E-value=10 Score=24.64 Aligned_cols=45 Identities=18% Similarity=0.317 Sum_probs=27.0
Q ss_pred CCccchhhcccCCcceeee-ccCCccCHHHHHHHH---hcCcCCCCCCC
Q 027217 152 HCPICYEYLFDSLRNTTVM-KCGHTMHCECYHEMI---KRDKYCCPICS 196 (226)
Q Consensus 152 ~CpICle~lf~s~~~v~~L-pCGH~~H~~C~~~~l---~~~~~~CPiCr 196 (226)
.|+||..+..+...-+.-- .|.--||..|+.--. ....|.||.|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 4778877643322222223 578899999975321 12579999885
No 194
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=27.24 E-value=42 Score=19.34 Aligned_cols=18 Identities=28% Similarity=0.493 Sum_probs=14.3
Q ss_pred CcCCCCCCCeecccchHH
Q 027217 188 DKYCCPICSKSVIDMSRT 205 (226)
Q Consensus 188 ~~~~CPiCrksi~dm~~~ 205 (226)
..|.|++|.+++...+..
T Consensus 11 k~~~C~~C~k~F~~~~~L 28 (46)
T 2enf_A 11 KPYKCNECGKVFTQNSHL 28 (46)
T ss_dssp CSCBCSSSCCBCSSHHHH
T ss_pred cCeECCCCCcccCCHHHH
Confidence 468999999999876543
No 195
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=27.13 E-value=43 Score=19.22 Aligned_cols=19 Identities=26% Similarity=0.214 Sum_probs=14.8
Q ss_pred CcCCCCCCCeecccchHHH
Q 027217 188 DKYCCPICSKSVIDMSRTW 206 (226)
Q Consensus 188 ~~~~CPiCrksi~dm~~~~ 206 (226)
..|.|++|.+++...+..-
T Consensus 11 ~~~~C~~C~k~f~~~~~L~ 29 (46)
T 2eop_A 11 KPHECRECGKSFSFNSQLI 29 (46)
T ss_dssp CSCBCTTTCCBCSSHHHHH
T ss_pred CCeeCCCCCchhCCHHHHH
Confidence 4689999999998765433
No 196
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A
Probab=27.11 E-value=38 Score=19.62 Aligned_cols=22 Identities=18% Similarity=0.409 Sum_probs=16.8
Q ss_pred CcCCCCCCCeecccchHHHHHH
Q 027217 188 DKYCCPICSKSVIDMSRTWKRI 209 (226)
Q Consensus 188 ~~~~CPiCrksi~dm~~~~~~l 209 (226)
..|.|++|.+++...+...+-+
T Consensus 11 k~~~C~~C~k~F~~~~~L~~H~ 32 (46)
T 2emk_A 11 KPYECKECGKAFSQTTHLIQHQ 32 (46)
T ss_dssp CSCBCSSSCCBCSCHHHHHHHH
T ss_pred CceECCCCCchhCCHHHHHHHH
Confidence 4689999999999776554443
No 197
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=27.06 E-value=56 Score=21.44 Aligned_cols=23 Identities=35% Similarity=0.996 Sum_probs=14.5
Q ss_pred CCCCcceeCCccceeeccccCcccc
Q 027217 111 DDCGICRIGGRENYFHCKRCGSCYS 135 (226)
Q Consensus 111 ~~CgiCR~G~~~~~fHC~~C~~C~s 135 (226)
+.|.+|+.+| +..-|+.|..-+-
T Consensus 6 ~~C~vC~~~g--~ll~Cd~C~~~fH 28 (60)
T 2puy_A 6 DFCSVCRKSG--QLLMCDTCSRVYH 28 (60)
T ss_dssp SSCTTTCCCS--SCEECSSSSCEEC
T ss_pred CCCcCCCCCC--cEEEcCCCCcCEE
Confidence 3567777664 5777777765443
No 198
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=26.97 E-value=53 Score=18.93 Aligned_cols=21 Identities=29% Similarity=0.460 Sum_probs=14.3
Q ss_pred CcCCCCCCCeecccchHHHHH
Q 027217 188 DKYCCPICSKSVIDMSRTWKR 208 (226)
Q Consensus 188 ~~~~CPiCrksi~dm~~~~~~ 208 (226)
..|.|++|.+++...+..-+.
T Consensus 11 k~~~C~~C~k~f~~~~~L~~H 31 (46)
T 2ytt_A 11 KPYQCSECGKSFSGSYRLTQH 31 (46)
T ss_dssp CTTCCSSSCCCCSSHHHHHHH
T ss_pred CCeeCCCCCcccCCHHHHHHH
Confidence 457888888888765544333
No 199
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=26.90 E-value=43 Score=19.22 Aligned_cols=18 Identities=28% Similarity=0.578 Sum_probs=14.2
Q ss_pred CcCCCCCCCeecccchHH
Q 027217 188 DKYCCPICSKSVIDMSRT 205 (226)
Q Consensus 188 ~~~~CPiCrksi~dm~~~ 205 (226)
..|.|++|.+++...+..
T Consensus 11 k~~~C~~C~k~f~~~~~L 28 (46)
T 2ytr_A 11 KPYKCNECGKAFSQTSKL 28 (46)
T ss_dssp CTTCCTTTCCCCSSHHHH
T ss_pred cCcCCCCCCCccCCHHHH
Confidence 468999999999876543
No 200
>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.84 E-value=30 Score=18.88 Aligned_cols=20 Identities=20% Similarity=0.384 Sum_probs=15.0
Q ss_pred CcCCCCCCCeecccc-hHHHH
Q 027217 188 DKYCCPICSKSVIDM-SRTWK 207 (226)
Q Consensus 188 ~~~~CPiCrksi~dm-~~~~~ 207 (226)
..|.|++|.+++... +...+
T Consensus 8 k~~~C~~C~k~f~~~~~~L~~ 28 (37)
T 2elp_A 8 RAMKCPYCDFYFMKNGSDLQR 28 (37)
T ss_dssp CCEECSSSSCEECSSCHHHHH
T ss_pred CCeECCCCChhhccCHHHHHH
Confidence 468999999999876 55433
No 201
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=26.82 E-value=48 Score=19.07 Aligned_cols=22 Identities=14% Similarity=0.345 Sum_probs=16.1
Q ss_pred CcCCCCCCCeecccchHHHHHH
Q 027217 188 DKYCCPICSKSVIDMSRTWKRI 209 (226)
Q Consensus 188 ~~~~CPiCrksi~dm~~~~~~l 209 (226)
..|.|++|.+++...+..-+.+
T Consensus 11 k~~~C~~C~k~F~~~~~L~~H~ 32 (46)
T 2en3_A 11 KPFQCKECGMNFSWSCSLFKHL 32 (46)
T ss_dssp CSEECSSSCCEESSSHHHHHHH
T ss_pred CCeeCcccChhhCCHHHHHHHH
Confidence 4688999999998766544443
No 202
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=26.75 E-value=43 Score=19.35 Aligned_cols=21 Identities=24% Similarity=0.550 Sum_probs=15.9
Q ss_pred CcCCCCCCCeecccchHHHHH
Q 027217 188 DKYCCPICSKSVIDMSRTWKR 208 (226)
Q Consensus 188 ~~~~CPiCrksi~dm~~~~~~ 208 (226)
..|.|++|.+++...+...+.
T Consensus 11 k~~~C~~C~k~f~~~~~L~~H 31 (46)
T 2eoh_A 11 KPYECKECRKTFIQIGHLNQH 31 (46)
T ss_dssp CSCCCSSSCCCCSSHHHHHHH
T ss_pred CCcCCCCcCchhCCHHHHHHH
Confidence 468999999999876554443
No 203
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=26.73 E-value=36 Score=22.66 Aligned_cols=14 Identities=36% Similarity=1.054 Sum_probs=8.7
Q ss_pred cceeecCccc-cccC
Q 027217 88 MGEYFCDICK-FYDD 101 (226)
Q Consensus 88 f~~Y~C~~C~-l~dd 101 (226)
|.+|.|.+|- .||.
T Consensus 1 m~~y~C~~CGyvYd~ 15 (55)
T 2v3b_B 1 MRKWQCVVCGFIYDE 15 (55)
T ss_dssp CCEEEETTTCCEEET
T ss_pred CCcEEeCCCCeEECC
Confidence 4567788885 3443
No 204
>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=26.73 E-value=36 Score=19.59 Aligned_cols=19 Identities=26% Similarity=0.361 Sum_probs=14.8
Q ss_pred CcCCCCCCCeecccchHHH
Q 027217 188 DKYCCPICSKSVIDMSRTW 206 (226)
Q Consensus 188 ~~~~CPiCrksi~dm~~~~ 206 (226)
..+.|++|.+++...+...
T Consensus 11 k~~~C~~C~k~f~~~~~L~ 29 (46)
T 2eq3_A 11 KPYECNQCGKAFSVRSSLT 29 (46)
T ss_dssp CSSEETTTTEECSSHHHHH
T ss_pred CCeECCCCChhhCCHHHHH
Confidence 4689999999998765433
No 205
>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A
Probab=26.71 E-value=33 Score=19.09 Aligned_cols=20 Identities=15% Similarity=0.421 Sum_probs=14.9
Q ss_pred CcCCCCCCCeecccchHHHH
Q 027217 188 DKYCCPICSKSVIDMSRTWK 207 (226)
Q Consensus 188 ~~~~CPiCrksi~dm~~~~~ 207 (226)
..+.|++|.+++...+...+
T Consensus 5 k~~~C~~C~k~f~~~~~L~~ 24 (39)
T 1njq_A 5 RSYTCSFCKREFRSAQALGG 24 (39)
T ss_dssp SSEECTTTCCEESSHHHHHH
T ss_pred CceECCCCCcccCCHHHHHH
Confidence 45899999999987654333
No 206
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=26.65 E-value=44 Score=19.18 Aligned_cols=21 Identities=33% Similarity=0.409 Sum_probs=15.7
Q ss_pred CcCCCCCCCeecccchHHHHH
Q 027217 188 DKYCCPICSKSVIDMSRTWKR 208 (226)
Q Consensus 188 ~~~~CPiCrksi~dm~~~~~~ 208 (226)
..|.|++|.+++...+..-+.
T Consensus 11 ~~~~C~~C~k~f~~~~~L~~H 31 (46)
T 2eov_A 11 KPYKCSDCGKSFTWKSRLRIH 31 (46)
T ss_dssp CSCBCSSSCCBCSSHHHHHHH
T ss_pred CCccCCccChhhCCHHHHHHH
Confidence 468999999999876554443
No 207
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=26.64 E-value=42 Score=19.29 Aligned_cols=22 Identities=27% Similarity=0.478 Sum_probs=15.9
Q ss_pred CcCCCCCCCeecccchHHHHHH
Q 027217 188 DKYCCPICSKSVIDMSRTWKRI 209 (226)
Q Consensus 188 ~~~~CPiCrksi~dm~~~~~~l 209 (226)
..|.|++|.+++...+..-+.+
T Consensus 11 ~~~~C~~C~k~f~~~~~L~~H~ 32 (46)
T 2eor_A 11 KPYNCEECGKAFIHDSQLQEHQ 32 (46)
T ss_dssp CSEECTTTCCEESSHHHHHHHH
T ss_pred cCccCCCCCCCcCCHHHHHHHH
Confidence 4688999999998766544443
No 208
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.58 E-value=27 Score=23.56 Aligned_cols=36 Identities=22% Similarity=0.480 Sum_probs=17.0
Q ss_pred CCccchhhcccCCcceeeeccCCccCHHHHHHHHhcCcCCCCCCCeecc
Q 027217 152 HCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVI 200 (226)
Q Consensus 152 ~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~ 200 (226)
.|+-|.+.+.. +.+ ..=|..+|..|| +|-.|+++|.
T Consensus 7 ~C~~C~~~I~~--~~v--~a~~~~wH~~CF---------~C~~C~~~L~ 42 (73)
T 1wig_A 7 GCDSCEKYITG--RVL--EAGEKHYHPSCA---------LCVRCGQMFA 42 (73)
T ss_dssp SCSSSCCCCSS--CCB--CCSSCCBCTTTS---------CCSSSCCCCC
T ss_pred CcccCCCEecC--eeE--EeCCCCCCCCcC---------EeCCCCCCCC
Confidence 45555555433 111 123556665553 4455555554
No 209
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=26.56 E-value=43 Score=19.27 Aligned_cols=18 Identities=28% Similarity=0.493 Sum_probs=14.3
Q ss_pred CcCCCCCCCeecccchHH
Q 027217 188 DKYCCPICSKSVIDMSRT 205 (226)
Q Consensus 188 ~~~~CPiCrksi~dm~~~ 205 (226)
..|.|++|.+++...+..
T Consensus 11 k~~~C~~C~k~F~~~~~L 28 (46)
T 2yti_A 11 KPYKCNECGKVFTQNSHL 28 (46)
T ss_dssp CTTCCSSSCCCCSSHHHH
T ss_pred cCeECCCCCcccCChhHH
Confidence 468999999999876543
No 210
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A
Probab=26.55 E-value=40 Score=19.51 Aligned_cols=21 Identities=19% Similarity=0.265 Sum_probs=14.5
Q ss_pred CcCCCCCCCeecccchHHHHH
Q 027217 188 DKYCCPICSKSVIDMSRTWKR 208 (226)
Q Consensus 188 ~~~~CPiCrksi~dm~~~~~~ 208 (226)
..+.|++|.+++...+...+.
T Consensus 11 k~~~C~~C~k~f~~~~~L~~H 31 (46)
T 2ely_A 11 KPFKCVECGKGFSRRSALNVH 31 (46)
T ss_dssp CSBCCSSSCCCBSSTTHHHHH
T ss_pred CCcccCccCcccCCHHHHHHH
Confidence 457888888888766554443
No 211
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A
Probab=26.31 E-value=33 Score=19.27 Aligned_cols=21 Identities=24% Similarity=0.381 Sum_probs=15.7
Q ss_pred CcCCCCCCCeecccchHHHHH
Q 027217 188 DKYCCPICSKSVIDMSRTWKR 208 (226)
Q Consensus 188 ~~~~CPiCrksi~dm~~~~~~ 208 (226)
..|.|++|.+++...+..-+-
T Consensus 10 ~~~~C~~C~k~f~~~~~l~~H 30 (42)
T 2epc_A 10 TPYLCGQCGKSFTQRGSLAVH 30 (42)
T ss_dssp CCEECSSSCCEESSHHHHHHH
T ss_pred CCeECCCCCcccCCHHHHHHH
Confidence 468999999999876554333
No 212
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=26.30 E-value=41 Score=19.40 Aligned_cols=19 Identities=16% Similarity=0.459 Sum_probs=14.7
Q ss_pred CcCCCCCCCeecccchHHH
Q 027217 188 DKYCCPICSKSVIDMSRTW 206 (226)
Q Consensus 188 ~~~~CPiCrksi~dm~~~~ 206 (226)
..|.|++|.+++...+...
T Consensus 11 k~~~C~~C~k~f~~~~~L~ 29 (46)
T 2emg_A 11 NPFICSECGKVFTHKTNLI 29 (46)
T ss_dssp CSCBCTTTCCBCSSHHHHH
T ss_pred CCEECCccCcccCCHHHHH
Confidence 4689999999998765433
No 213
>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B
Probab=26.22 E-value=33 Score=20.33 Aligned_cols=21 Identities=14% Similarity=0.273 Sum_probs=16.1
Q ss_pred CcCCCCCCCeecccchHHHHH
Q 027217 188 DKYCCPICSKSVIDMSRTWKR 208 (226)
Q Consensus 188 ~~~~CPiCrksi~dm~~~~~~ 208 (226)
.-|.|+.|.|++...+...+.
T Consensus 7 kp~~C~~CgK~F~~~s~L~~H 27 (36)
T 1fv5_A 7 ARFMCLPCGIAFSSPSTLEAH 27 (36)
T ss_dssp CCCEETTTTEECSCHHHHHHH
T ss_pred cCeECCCCCCccCCHhHccCc
Confidence 568999999999976654443
No 214
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=26.08 E-value=30 Score=24.12 Aligned_cols=48 Identities=21% Similarity=0.318 Sum_probs=29.4
Q ss_pred CCccchhhcccCCcceeeeccCCccCHHHHHHHHh----cCcCCCCCCCeecc
Q 027217 152 HCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIK----RDKYCCPICSKSVI 200 (226)
Q Consensus 152 ~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~----~~~~~CPiCrksi~ 200 (226)
-| ||.....+...-|.--.|.-.||..|+.--.. ...|.||.|+++..
T Consensus 14 ~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~~ 65 (79)
T 1wep_A 14 YC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVFG 65 (79)
T ss_dssp CS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTSC
T ss_pred EE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCcccccC
Confidence 45 78765322222222235889999999953211 25799999997653
No 215
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=25.99 E-value=42 Score=19.35 Aligned_cols=22 Identities=23% Similarity=0.336 Sum_probs=15.3
Q ss_pred CcCCCCCCCeecccchHHHHHH
Q 027217 188 DKYCCPICSKSVIDMSRTWKRI 209 (226)
Q Consensus 188 ~~~~CPiCrksi~dm~~~~~~l 209 (226)
..|.|++|.+++...+..-+-+
T Consensus 11 k~~~C~~C~k~f~~~~~L~~H~ 32 (46)
T 2emp_A 11 KPYMCNECGKAFSVYSSLTTHQ 32 (46)
T ss_dssp CSEECSSSCCEESCHHHHHHHH
T ss_pred cCeECCCCCchhCCHHHHHHHH
Confidence 4578999999888766544443
No 216
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=25.87 E-value=36 Score=19.81 Aligned_cols=19 Identities=26% Similarity=0.489 Sum_probs=14.7
Q ss_pred CcCCCCCCCeecccchHHH
Q 027217 188 DKYCCPICSKSVIDMSRTW 206 (226)
Q Consensus 188 ~~~~CPiCrksi~dm~~~~ 206 (226)
..|.|++|.+++...+..-
T Consensus 11 k~~~C~~C~k~f~~~~~L~ 29 (46)
T 2eon_A 11 KPYKCQVCGKAFRVSSHLV 29 (46)
T ss_dssp CSCBCSSSCCBCSSHHHHH
T ss_pred cccCCCCCCcccCcHHHHH
Confidence 4689999999998765433
No 217
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=25.78 E-value=44 Score=19.25 Aligned_cols=21 Identities=33% Similarity=0.673 Sum_probs=14.9
Q ss_pred CcCCCCCCCeecccchHHHHH
Q 027217 188 DKYCCPICSKSVIDMSRTWKR 208 (226)
Q Consensus 188 ~~~~CPiCrksi~dm~~~~~~ 208 (226)
..|.|++|.+++...+..-+.
T Consensus 11 k~~~C~~C~k~F~~~~~L~~H 31 (46)
T 2emh_A 11 RPYICTVCGKAFTDRSNLIKH 31 (46)
T ss_dssp CSEECTTTCCEESSHHHHHHH
T ss_pred CCcCCCCCCchhCCHHHHHHH
Confidence 457899999988876554443
No 218
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=25.54 E-value=51 Score=30.38 Aligned_cols=69 Identities=19% Similarity=0.401 Sum_probs=49.1
Q ss_pred ccccCccccccccCcceeecCCCCCCCccchhhcccCCcceeee--ccCCccCHHHHHHHHh---------cCcCCCCCC
Q 027217 127 CKRCGSCYSTSLRNNHLCIENSMHHHCPICYEYLFDSLRNTTVM--KCGHTMHCECYHEMIK---------RDKYCCPIC 195 (226)
Q Consensus 127 C~~C~~C~s~~l~~~H~C~e~~~~~~CpICle~lf~s~~~v~~L--pCGH~~H~~C~~~~l~---------~~~~~CPiC 195 (226)
--.|..|...-+.+...-.+...+.-|-||.+. .+-+.-= .|...|...|++.++. .....|=+|
T Consensus 70 v~lC~~Ck~~y~~~~f~~D~DG~~~yCr~C~~G----g~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C 145 (386)
T 2pv0_B 70 GGICAPCKDKFLDALFLYDDDGYQSYCSICCSG----ETLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLC 145 (386)
T ss_dssp SBCCHHHHHHHHTTTTCBCSSSSBCSCTTTCCC----SSCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTT
T ss_pred cchhhHHHHHHhccCcccCCCCCcccceEcCCC----CeEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEc
Confidence 445666666666666777788889999999975 2222212 6889999999999882 146788888
Q ss_pred Ceec
Q 027217 196 SKSV 199 (226)
Q Consensus 196 rksi 199 (226)
.-+-
T Consensus 146 ~p~p 149 (386)
T 2pv0_B 146 LPSS 149 (386)
T ss_dssp SSCC
T ss_pred CCcc
Confidence 8665
No 219
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=25.52 E-value=35 Score=19.74 Aligned_cols=19 Identities=26% Similarity=0.328 Sum_probs=14.7
Q ss_pred CcCCCCCCCeecccchHHH
Q 027217 188 DKYCCPICSKSVIDMSRTW 206 (226)
Q Consensus 188 ~~~~CPiCrksi~dm~~~~ 206 (226)
..+.|++|.+++...+..-
T Consensus 11 k~~~C~~C~k~f~~~~~L~ 29 (46)
T 2ene_A 11 KPYKCNECGKVFRHNSYLS 29 (46)
T ss_dssp SSEECSSSCCEESSHHHHH
T ss_pred CCeECCCCCchhCChHHHH
Confidence 4689999999998765433
No 220
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=25.40 E-value=12 Score=30.80 Aligned_cols=45 Identities=18% Similarity=0.512 Sum_probs=31.2
Q ss_pred CCCCCCccchhhcccCCcceeee---ccCCccCHHHHHHHHh---cCcCCCCCCCeec
Q 027217 148 SMHHHCPICYEYLFDSLRNTTVM---KCGHTMHCECYHEMIK---RDKYCCPICSKSV 199 (226)
Q Consensus 148 ~~~~~CpICle~lf~s~~~v~~L---pCGH~~H~~C~~~~l~---~~~~~CPiCrksi 199 (226)
..+..|.||... .+ .| .|.-.||..|+..-+. .+...||.|++.-
T Consensus 5 ~~~~~C~~C~~~----g~---ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 5 PNEDWCAVCQNG----GD---LLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG 55 (207)
T ss_dssp SSCSSBTTTCCC----EE---EEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCCCCCCCCC----Cc---eEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence 345668899753 11 33 5789999999976553 2468899998753
No 221
>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=25.30 E-value=35 Score=19.41 Aligned_cols=18 Identities=22% Similarity=0.436 Sum_probs=14.2
Q ss_pred CcCCCCCCCeecccchHH
Q 027217 188 DKYCCPICSKSVIDMSRT 205 (226)
Q Consensus 188 ~~~~CPiCrksi~dm~~~ 205 (226)
..|.|++|.+++...+..
T Consensus 11 k~~~C~~C~k~f~~~~~L 28 (44)
T 2eoj_A 11 NPYECCECGKVFSRKDQL 28 (44)
T ss_dssp CSCEETTTTEECSSHHHH
T ss_pred cCeeCCCCCCccCCHHHH
Confidence 468999999999876543
No 222
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=25.10 E-value=48 Score=19.05 Aligned_cols=18 Identities=22% Similarity=0.385 Sum_probs=14.2
Q ss_pred CcCCCCCCCeecccchHH
Q 027217 188 DKYCCPICSKSVIDMSRT 205 (226)
Q Consensus 188 ~~~~CPiCrksi~dm~~~ 205 (226)
..+.|++|.+++...+..
T Consensus 11 k~~~C~~C~k~f~~~~~L 28 (46)
T 2epz_A 11 KPFDCIDCGKAFSDHIGL 28 (46)
T ss_dssp CSBCCTTTCCCBSSHHHH
T ss_pred CCeECCCCCceeCCHHHH
Confidence 468999999999876543
No 223
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=25.06 E-value=44 Score=19.31 Aligned_cols=21 Identities=19% Similarity=0.170 Sum_probs=14.7
Q ss_pred CcCCCCCCCeecccchHHHHH
Q 027217 188 DKYCCPICSKSVIDMSRTWKR 208 (226)
Q Consensus 188 ~~~~CPiCrksi~dm~~~~~~ 208 (226)
..|.|++|.+++...+..-+.
T Consensus 11 k~~~C~~C~k~f~~~~~L~~H 31 (46)
T 2em8_A 11 KPYKCVECGKGYKRRLDLDFH 31 (46)
T ss_dssp CSEECSSSCCEESSHHHHHHH
T ss_pred CCeECcccCchhCCHHHHHHH
Confidence 457899999988876544433
No 224
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=24.96 E-value=51 Score=19.02 Aligned_cols=21 Identities=19% Similarity=0.319 Sum_probs=15.3
Q ss_pred CcCCCCCCCeecccchHHHHH
Q 027217 188 DKYCCPICSKSVIDMSRTWKR 208 (226)
Q Consensus 188 ~~~~CPiCrksi~dm~~~~~~ 208 (226)
..|.|++|.+++...+..-+.
T Consensus 11 k~~~C~~C~k~F~~~~~L~~H 31 (46)
T 2en9_A 11 KLFKCNECKKTFTQSSSLTVH 31 (46)
T ss_dssp CCCBCTTTCCBCSSHHHHHHH
T ss_pred CCEECCccCcccCCHHHHHHH
Confidence 468999999999876554333
No 225
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=24.90 E-value=50 Score=18.93 Aligned_cols=20 Identities=35% Similarity=0.554 Sum_probs=15.1
Q ss_pred CcCCCCCCCeecccchHHHH
Q 027217 188 DKYCCPICSKSVIDMSRTWK 207 (226)
Q Consensus 188 ~~~~CPiCrksi~dm~~~~~ 207 (226)
..+.|++|.+++...+..-+
T Consensus 11 k~~~C~~C~k~f~~~~~L~~ 30 (46)
T 2ep1_A 11 KPYECSDCGKSFIKKSQLHV 30 (46)
T ss_dssp CSSCCSSSCCCCSSHHHHHH
T ss_pred CCcCCCCCCchhCCHHHHHH
Confidence 46899999999987654333
No 226
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=24.72 E-value=38 Score=19.54 Aligned_cols=20 Identities=25% Similarity=0.512 Sum_probs=15.2
Q ss_pred CcCCCCCCCeecccchHHHH
Q 027217 188 DKYCCPICSKSVIDMSRTWK 207 (226)
Q Consensus 188 ~~~~CPiCrksi~dm~~~~~ 207 (226)
..|.|++|.+++...+...+
T Consensus 11 k~~~C~~C~k~f~~~~~L~~ 30 (46)
T 2eq2_A 11 KPYQCNECGKAFSQTSKLAR 30 (46)
T ss_dssp CSSSCCSSCCCCSSHHHHHH
T ss_pred CCeECCCCCcccCCHHHHHH
Confidence 46899999999987654333
No 227
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.65 E-value=36 Score=19.71 Aligned_cols=21 Identities=14% Similarity=0.205 Sum_probs=15.6
Q ss_pred CcCCCCCCCeecccchHHHHH
Q 027217 188 DKYCCPICSKSVIDMSRTWKR 208 (226)
Q Consensus 188 ~~~~CPiCrksi~dm~~~~~~ 208 (226)
..|.|++|.+++...+...+.
T Consensus 11 ~~~~C~~C~k~f~~~~~L~~H 31 (46)
T 2em5_A 11 KSHQCHECGRGFTLKSHLNQH 31 (46)
T ss_dssp CSEECSSSCCEESSHHHHHHH
T ss_pred CCeECCcCCCccCCHHHHHHH
Confidence 468999999999876554433
No 228
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=24.64 E-value=50 Score=19.05 Aligned_cols=17 Identities=29% Similarity=0.567 Sum_probs=13.8
Q ss_pred CcCCCCCCCeecccchH
Q 027217 188 DKYCCPICSKSVIDMSR 204 (226)
Q Consensus 188 ~~~~CPiCrksi~dm~~ 204 (226)
..|.|++|.+++...+.
T Consensus 11 k~~~C~~C~k~f~~~~~ 27 (46)
T 2ytq_A 11 KPYGCSECGKAFSSKSY 27 (46)
T ss_dssp CSCBCSSSCCBCSCHHH
T ss_pred CCcCCCccChhhCChHH
Confidence 46899999999987654
No 229
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=24.51 E-value=51 Score=18.95 Aligned_cols=18 Identities=28% Similarity=0.488 Sum_probs=14.3
Q ss_pred CcCCCCCCCeecccchHH
Q 027217 188 DKYCCPICSKSVIDMSRT 205 (226)
Q Consensus 188 ~~~~CPiCrksi~dm~~~ 205 (226)
..|.|++|.+++...+..
T Consensus 11 k~~~C~~C~k~f~~~~~L 28 (46)
T 2eq1_A 11 KPYKCNECGKAFRAHSNL 28 (46)
T ss_dssp CCCCCTTTTCCCSSHHHH
T ss_pred CCeECCcCChhhCCHHHH
Confidence 468999999999876543
No 230
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=24.42 E-value=40 Score=19.44 Aligned_cols=21 Identities=19% Similarity=0.384 Sum_probs=14.9
Q ss_pred CcCCCCCCCeecccchHHHHH
Q 027217 188 DKYCCPICSKSVIDMSRTWKR 208 (226)
Q Consensus 188 ~~~~CPiCrksi~dm~~~~~~ 208 (226)
..|.|++|.+++...+..-+.
T Consensus 11 k~~~C~~C~k~F~~~~~L~~H 31 (46)
T 2emy_A 11 NPYECHECGKAFSRKYQLISH 31 (46)
T ss_dssp CCEECSSSCCEESSHHHHHHH
T ss_pred cCcCCCCCCcccCcHHHHHHH
Confidence 457899999998876554443
No 231
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=24.38 E-value=46 Score=19.23 Aligned_cols=19 Identities=26% Similarity=0.501 Sum_probs=14.7
Q ss_pred CcCCCCCCCeecccchHHH
Q 027217 188 DKYCCPICSKSVIDMSRTW 206 (226)
Q Consensus 188 ~~~~CPiCrksi~dm~~~~ 206 (226)
..|.|++|.+++...+..-
T Consensus 11 k~~~C~~C~k~f~~~~~L~ 29 (46)
T 2em6_A 11 KCYKCDVCGKEFSQSSHLQ 29 (46)
T ss_dssp CCCBCSSSCCBCSSHHHHH
T ss_pred CCeECCCCCcccCCHHHHH
Confidence 4689999999998765433
No 232
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=24.35 E-value=44 Score=22.94 Aligned_cols=22 Identities=27% Similarity=0.839 Sum_probs=13.8
Q ss_pred cCCCCCCCcceeecCccccccCCCCCCeeccCCCC
Q 027217 80 VCTNCGVNMGEYFCDICKFYDDDIEKGQFHCDDCG 114 (226)
Q Consensus 80 ~C~~Cg~~f~~Y~C~~C~l~dd~~~k~~yHC~~Cg 114 (226)
.|..|+..|+. + +...||-.||
T Consensus 13 ~C~~C~~~F~~--------~-----~RrHHCR~CG 34 (73)
T 1vfy_A 13 ACMICSKKFSL--------L-----NRKHHCRSCG 34 (73)
T ss_dssp BCTTTCCBCBT--------T-----BCCEECTTTC
T ss_pred cccCCCCccCC--------c-----cccccCCCCC
Confidence 57777777752 2 4456776665
No 233
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=24.26 E-value=43 Score=19.24 Aligned_cols=20 Identities=25% Similarity=0.398 Sum_probs=15.3
Q ss_pred CcCCCCCCCeecccchHHHH
Q 027217 188 DKYCCPICSKSVIDMSRTWK 207 (226)
Q Consensus 188 ~~~~CPiCrksi~dm~~~~~ 207 (226)
..|.|++|.+++...+..-+
T Consensus 11 ~~~~C~~C~k~F~~~~~L~~ 30 (46)
T 2eoe_A 11 KPYKCNECGKVFTQNSHLAN 30 (46)
T ss_dssp CSSEETTTTEECSSHHHHHH
T ss_pred CCeECCCcChhhCCHHHHHH
Confidence 46899999999987655433
No 234
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.84 E-value=49 Score=19.16 Aligned_cols=21 Identities=19% Similarity=0.292 Sum_probs=15.3
Q ss_pred CcCCCCCCCeecccchHHHHH
Q 027217 188 DKYCCPICSKSVIDMSRTWKR 208 (226)
Q Consensus 188 ~~~~CPiCrksi~dm~~~~~~ 208 (226)
..|.|++|.+++...+..-+.
T Consensus 11 k~~~C~~C~k~F~~~~~L~~H 31 (46)
T 2eom_A 11 RGHRCSDCGKFFLQASNFIQH 31 (46)
T ss_dssp SSCCCSSSCCCCSSHHHHHHH
T ss_pred CCcCCCCCCCeeCChHHHHHH
Confidence 468999999999876544333
No 235
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A
Probab=23.80 E-value=47 Score=19.92 Aligned_cols=17 Identities=24% Similarity=0.325 Sum_probs=10.4
Q ss_pred CCCCCCCeecccchHHH
Q 027217 190 YCCPICSKSVIDMSRTW 206 (226)
Q Consensus 190 ~~CPiCrksi~dm~~~~ 206 (226)
|.|++|.+++...+...
T Consensus 2 ~~C~~C~~~f~~~~~l~ 18 (57)
T 1bbo_A 2 YICEECGIRXKKPSMLK 18 (57)
T ss_dssp CBCTTTCCBCSSHHHHH
T ss_pred CcCCCCcCcCCCHHHHH
Confidence 56777777776554433
No 236
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.59 E-value=41 Score=19.34 Aligned_cols=21 Identities=19% Similarity=0.222 Sum_probs=16.0
Q ss_pred CcCCCCCCCeecccchHHHHH
Q 027217 188 DKYCCPICSKSVIDMSRTWKR 208 (226)
Q Consensus 188 ~~~~CPiCrksi~dm~~~~~~ 208 (226)
..+.|++|.+++...+..-+-
T Consensus 11 k~~~C~~C~k~F~~~~~L~~H 31 (46)
T 2epw_A 11 KPCKCTECGKAFCWKSQLIMH 31 (46)
T ss_dssp CSEECSSSCCEESSSHHHHHH
T ss_pred CCeeCCCCCCccCCHHHHHHH
Confidence 468999999999977654443
No 237
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=23.45 E-value=74 Score=22.25 Aligned_cols=34 Identities=21% Similarity=0.286 Sum_probs=22.9
Q ss_pred CcCCCCCCCeecccchHHHHHHHHHHHhCCCCCCCC
Q 027217 188 DKYCCPICSKSVIDMSRTWKRIDEELQMNSSIFFPS 223 (226)
Q Consensus 188 ~~~~CPiCrksi~dm~~~~~~lD~~i~~~pm~~~~~ 223 (226)
..|.|++|.|.+...+..-+.+ ...-+..|+||+
T Consensus 61 k~~~C~~Cgk~F~~~~~L~~H~--~~~H~~~p~~~~ 94 (96)
T 2ctd_A 61 EMFTCHHCGKQLRSLAGMKYHV--MANHNSLPSGPS 94 (96)
T ss_dssp CCCCCSSSCCCCSSHHHHHHHH--HHHTCCCSSCSC
T ss_pred CCeECCCCCCeeCCHHHHHHHh--HHhcCCCCCCCC
Confidence 5689999999998765543331 122356788875
No 238
>1ptq_A Protein kinase C delta type; phosphotransferase; 1.95A {Mus musculus} SCOP: g.49.1.1 PDB: 1ptr_A*
Probab=23.39 E-value=47 Score=20.65 Aligned_cols=11 Identities=45% Similarity=1.177 Sum_probs=5.6
Q ss_pred CCCeeccCCCC
Q 027217 104 EKGQFHCDDCG 114 (226)
Q Consensus 104 ~k~~yHC~~Cg 114 (226)
.|+-|.|..||
T Consensus 25 ~~qg~~C~~C~ 35 (50)
T 1ptq_A 25 VKQGLKCEDCG 35 (50)
T ss_dssp SSCEEEETTTC
T ss_pred CCccCEeCCCC
Confidence 34555555554
No 239
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A
Probab=23.23 E-value=45 Score=19.28 Aligned_cols=21 Identities=24% Similarity=0.335 Sum_probs=15.4
Q ss_pred CcCCCCCCCeecccchHHHHH
Q 027217 188 DKYCCPICSKSVIDMSRTWKR 208 (226)
Q Consensus 188 ~~~~CPiCrksi~dm~~~~~~ 208 (226)
..|.|++|.+++...+..-+.
T Consensus 11 k~~~C~~C~k~F~~~~~L~~H 31 (46)
T 2emj_A 11 KPFECAECGKSFSISSQLATH 31 (46)
T ss_dssp CSEECSSSSCEESSHHHHHHH
T ss_pred CCEECCCCCcccCCHHHHHHH
Confidence 468899999999876554433
No 240
>1v5n_A PDI-like hypothetical protein AT1G60420; DC1 domain, zinc binding domain, PDI-like protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.49.1.3
Probab=23.23 E-value=39 Score=24.39 Aligned_cols=10 Identities=30% Similarity=0.893 Sum_probs=5.4
Q ss_pred ceeeccccCc
Q 027217 123 NYFHCKRCGS 132 (226)
Q Consensus 123 ~~fHC~~C~~ 132 (226)
-+++|..|+.
T Consensus 60 ~~Y~C~~C~f 69 (89)
T 1v5n_A 60 WSYHCDECDF 69 (89)
T ss_dssp CEEECTTTCC
T ss_pred cEEEcCCCCC
Confidence 3556655553
No 241
>1x4s_A Protein FON, zinc finger HIT domain containing protein 2; structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.2
Probab=23.22 E-value=29 Score=23.80 Aligned_cols=24 Identities=25% Similarity=0.653 Sum_probs=15.2
Q ss_pred ceeEeCCCCcc--ccccccCCCCCCC
Q 027217 64 KQVICSVCDTE--QPVAQVCTNCGVN 87 (226)
Q Consensus 64 ~~v~Cg~C~~~--q~v~~~C~~Cg~~ 87 (226)
++.+|.+|... ++..-.||.|++.
T Consensus 10 ~~~~C~vC~~~~~~~akY~CPrC~~r 35 (59)
T 1x4s_A 10 PAGPCGFCPAGEVQPARYTCPRCNAP 35 (59)
T ss_dssp CCEEECSSCTTCCEEECEECTTTCCE
T ss_pred CCCcCcCCCCCcCCCccccCcCCCCC
Confidence 35788888763 4445567777653
No 242
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.17 E-value=40 Score=19.43 Aligned_cols=21 Identities=33% Similarity=0.588 Sum_probs=15.7
Q ss_pred CcCCCCCCCeecccchHHHHH
Q 027217 188 DKYCCPICSKSVIDMSRTWKR 208 (226)
Q Consensus 188 ~~~~CPiCrksi~dm~~~~~~ 208 (226)
..+.|++|.+++...+...+.
T Consensus 11 k~~~C~~C~k~f~~~~~L~~H 31 (46)
T 2ep2_A 11 KPYECSICGKSFTKKSQLHVH 31 (46)
T ss_dssp CSEECSSSCCEESSHHHHHHH
T ss_pred cCcCCCCCCcccCCHHHHHHH
Confidence 468999999999876654443
No 243
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.15 E-value=42 Score=19.12 Aligned_cols=21 Identities=19% Similarity=0.390 Sum_probs=15.3
Q ss_pred CcCCCCCCCeecccchHHHHH
Q 027217 188 DKYCCPICSKSVIDMSRTWKR 208 (226)
Q Consensus 188 ~~~~CPiCrksi~dm~~~~~~ 208 (226)
..+.|++|.+++...+..-+-
T Consensus 9 k~~~C~~C~k~f~~~~~L~~H 29 (44)
T 2emx_A 9 KPFGCSCCEKAFSSKSYLLVH 29 (44)
T ss_dssp CCEECSSSSCEESSHHHHHHH
T ss_pred cCccCCCCCcccCCHHHHHHH
Confidence 458899999999876654443
No 244
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.14 E-value=50 Score=18.91 Aligned_cols=20 Identities=30% Similarity=0.444 Sum_probs=15.2
Q ss_pred CcCCCCCCCeecccchHHHH
Q 027217 188 DKYCCPICSKSVIDMSRTWK 207 (226)
Q Consensus 188 ~~~~CPiCrksi~dm~~~~~ 207 (226)
..|.|++|.+++...+..-+
T Consensus 11 k~~~C~~C~k~f~~~~~L~~ 30 (46)
T 2eq4_A 11 KLYNCKECGKSFSRAPCLLK 30 (46)
T ss_dssp CCCCBTTTTBCCSCHHHHHH
T ss_pred CCeECCCCCCccCchHHHHH
Confidence 46899999999987654433
No 245
>3p8b_A DNA-directed RNA polymerase, subunit E''; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus}
Probab=23.04 E-value=37 Score=24.70 Aligned_cols=22 Identities=23% Similarity=0.588 Sum_probs=17.1
Q ss_pred eeEeCCCCccccccccCCCCCCC
Q 027217 65 QVICSVCDTEQPVAQVCTNCGVN 87 (226)
Q Consensus 65 ~v~Cg~C~~~q~v~~~C~~Cg~~ 87 (226)
.-.|..|+..++.. .||+||..
T Consensus 23 ~rAC~~C~~v~~~d-~CPnCgs~ 44 (81)
T 3p8b_A 23 EKACRHCHYITSED-RCPVCGSR 44 (81)
T ss_dssp CEEETTTCBEESSS-SCTTTCCC
T ss_pred HHHHhhCCCccCCC-CCCCCCCC
Confidence 34699999998664 69999863
No 246
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.95 E-value=41 Score=19.40 Aligned_cols=18 Identities=33% Similarity=0.645 Sum_probs=14.2
Q ss_pred CcCCCCCCCeecccchHH
Q 027217 188 DKYCCPICSKSVIDMSRT 205 (226)
Q Consensus 188 ~~~~CPiCrksi~dm~~~ 205 (226)
..|.|++|.+++...+..
T Consensus 11 ~~~~C~~C~k~F~~~~~L 28 (46)
T 2emi_A 11 RHYECSECGKAFIQKSTL 28 (46)
T ss_dssp CCEECSSSCCEESSHHHH
T ss_pred CCCCCCCCCcccCCHHHH
Confidence 468999999999876543
No 247
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.83 E-value=41 Score=19.31 Aligned_cols=20 Identities=20% Similarity=0.348 Sum_probs=15.2
Q ss_pred CcCCCCCCCeecccchHHHH
Q 027217 188 DKYCCPICSKSVIDMSRTWK 207 (226)
Q Consensus 188 ~~~~CPiCrksi~dm~~~~~ 207 (226)
..+.|++|.+++...+..-+
T Consensus 11 k~~~C~~C~k~f~~~~~L~~ 30 (46)
T 2ytf_A 11 KPFECSECQKAFNTKSNLIV 30 (46)
T ss_dssp CSEECSSSCCEESSHHHHHH
T ss_pred CCcCCCCCCcccCCHHHHHH
Confidence 46899999999987655433
No 248
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.77 E-value=39 Score=19.00 Aligned_cols=21 Identities=14% Similarity=0.498 Sum_probs=15.5
Q ss_pred CcCCCCCCCeecccchHHHHH
Q 027217 188 DKYCCPICSKSVIDMSRTWKR 208 (226)
Q Consensus 188 ~~~~CPiCrksi~dm~~~~~~ 208 (226)
..|.|++|.+++...+..-+.
T Consensus 10 k~~~C~~C~k~f~~~~~L~~H 30 (42)
T 2en2_A 10 KPYKCETCGARFVQVAHLRAH 30 (42)
T ss_dssp CSEECTTTCCEESSHHHHHHH
T ss_pred CCEeCCCcChhhCCHHHHHHH
Confidence 468999999999876554333
No 249
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Probab=22.76 E-value=42 Score=18.83 Aligned_cols=18 Identities=22% Similarity=0.521 Sum_probs=14.1
Q ss_pred CcCCCCCCCeecccchHH
Q 027217 188 DKYCCPICSKSVIDMSRT 205 (226)
Q Consensus 188 ~~~~CPiCrksi~dm~~~ 205 (226)
..+.|++|.+++...+..
T Consensus 9 k~~~C~~C~k~f~~~~~L 26 (42)
T 2el5_A 9 NPYECSECGKAFNRKDQL 26 (42)
T ss_dssp CSEECSSSCCEESSHHHH
T ss_pred CCccCCCcChhhCCHHHH
Confidence 468999999999876543
No 250
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.69 E-value=50 Score=19.03 Aligned_cols=18 Identities=22% Similarity=0.578 Sum_probs=14.3
Q ss_pred CcCCCCCCCeecccchHH
Q 027217 188 DKYCCPICSKSVIDMSRT 205 (226)
Q Consensus 188 ~~~~CPiCrksi~dm~~~ 205 (226)
..|.|++|.+++...+..
T Consensus 11 k~~~C~~C~k~F~~~~~L 28 (46)
T 2enh_A 11 KPYECDVCRKAFSHHASL 28 (46)
T ss_dssp SSCBCTTTCCBCSSSHHH
T ss_pred CCcCCCCcCchhCCHHHH
Confidence 468999999999876543
No 251
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}
Probab=22.61 E-value=42 Score=19.33 Aligned_cols=20 Identities=15% Similarity=0.268 Sum_probs=15.2
Q ss_pred CcCCCCCCCeecccchHHHH
Q 027217 188 DKYCCPICSKSVIDMSRTWK 207 (226)
Q Consensus 188 ~~~~CPiCrksi~dm~~~~~ 207 (226)
..+.|++|.+++...+...+
T Consensus 11 k~~~C~~C~k~F~~~~~L~~ 30 (46)
T 2em0_A 11 KTWKCRECDMCFSQASSLRL 30 (46)
T ss_dssp CCCCCSSSCCCCSSHHHHHH
T ss_pred cCeECCCCCcccCCHHHHHH
Confidence 46899999999987655433
No 252
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.56 E-value=38 Score=19.56 Aligned_cols=18 Identities=22% Similarity=0.384 Sum_probs=14.2
Q ss_pred CcCCCCCCCeecccchHH
Q 027217 188 DKYCCPICSKSVIDMSRT 205 (226)
Q Consensus 188 ~~~~CPiCrksi~dm~~~ 205 (226)
..|.|++|.+++...+..
T Consensus 11 k~~~C~~C~k~f~~~~~L 28 (46)
T 2ysp_A 11 KPYKCEKCGKGYNSKFNL 28 (46)
T ss_dssp CSEEETTTTEEESCHHHH
T ss_pred CCeECCCCCCccCCHHHH
Confidence 468999999999876543
No 253
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.47 E-value=45 Score=19.21 Aligned_cols=21 Identities=24% Similarity=0.419 Sum_probs=14.6
Q ss_pred CcCCCCCCCeecccchHHHHH
Q 027217 188 DKYCCPICSKSVIDMSRTWKR 208 (226)
Q Consensus 188 ~~~~CPiCrksi~dm~~~~~~ 208 (226)
..+.|++|.+++...+..-+.
T Consensus 11 k~~~C~~C~k~f~~~~~L~~H 31 (46)
T 2yu8_A 11 KPYKCNECGKVFTQNSHLARH 31 (46)
T ss_dssp SSEECSSSCCEESSSHHHHHH
T ss_pred CCeECCcCCchhCCHHHHHHH
Confidence 457888888888876554443
No 254
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}
Probab=22.46 E-value=43 Score=19.37 Aligned_cols=19 Identities=32% Similarity=0.550 Sum_probs=14.5
Q ss_pred CcCCCCCCCeecccchHHH
Q 027217 188 DKYCCPICSKSVIDMSRTW 206 (226)
Q Consensus 188 ~~~~CPiCrksi~dm~~~~ 206 (226)
..|.|++|.+++...+...
T Consensus 11 k~~~C~~C~k~f~~~~~L~ 29 (46)
T 2el6_A 11 NPYKCSQCEKSFSGKLRLL 29 (46)
T ss_dssp CSEECSSSSCEESSHHHHH
T ss_pred CCeECCCCCcccCCHHHHH
Confidence 4689999999998765433
No 255
>3u6p_A Formamidopyrimidine-DNA glycosylase; DNA glycosylase, DNA repair, sequence context; HET: DNA 08Q; 1.60A {Geobacillus stearothermophilus} PDB: 3u6d_A* 3u6c_A* 3u6l_A* 3u6m_A* 3u6o_A* 3u6e_A* 3u6q_A* 3u6s_A* 3gp1_A* 3sbj_A* 2f5q_A* 2f5s_A* 3gq4_A* 3gpy_A* 2f5n_A 2f5o_A 2f5p_A 3sau_A* 3sar_A* 3sav_A* ...
Probab=22.40 E-value=38 Score=29.31 Aligned_cols=19 Identities=32% Similarity=1.057 Sum_probs=14.0
Q ss_pred cccCCCCCCCc--------ceeecCcc
Q 027217 78 AQVCTNCGVNM--------GEYFCDIC 96 (226)
Q Consensus 78 ~~~C~~Cg~~f--------~~Y~C~~C 96 (226)
++.|+.||... +.|||+.|
T Consensus 245 g~pC~~CG~~I~~~~~~gR~t~~CP~C 271 (273)
T 3u6p_A 245 GNPCKRCGTPIEKTVVAGRGTHYCPRC 271 (273)
T ss_dssp TSBCTTTCCBCEEEEETTEEEEECTTT
T ss_pred cCCCCCCCCeEEEEEECCCCeEECCCC
Confidence 36799999887 45667666
No 256
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.34 E-value=35 Score=19.65 Aligned_cols=20 Identities=35% Similarity=0.601 Sum_probs=15.1
Q ss_pred CcCCCCCCCeecccchHHHH
Q 027217 188 DKYCCPICSKSVIDMSRTWK 207 (226)
Q Consensus 188 ~~~~CPiCrksi~dm~~~~~ 207 (226)
..|.|++|.+++...+...+
T Consensus 11 k~~~C~~C~k~f~~~~~L~~ 30 (46)
T 2yts_A 11 KPYICNECGKSFIQKSHLNR 30 (46)
T ss_dssp CSEECSSSCCEESSHHHHHH
T ss_pred cCEECCCCChhhCChHHHHH
Confidence 46899999999987654433
No 257
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.29 E-value=44 Score=19.18 Aligned_cols=22 Identities=23% Similarity=0.280 Sum_probs=16.3
Q ss_pred CcCCCCCCCeecccchHHHHHH
Q 027217 188 DKYCCPICSKSVIDMSRTWKRI 209 (226)
Q Consensus 188 ~~~~CPiCrksi~dm~~~~~~l 209 (226)
..+.|++|.+++...+..-+-+
T Consensus 11 k~~~C~~C~k~f~~~~~L~~H~ 32 (46)
T 2eow_A 11 KPYKCNECGKAFRARSSLAIHQ 32 (46)
T ss_dssp CCEECTTSCCEESSHHHHHHHH
T ss_pred CCeeccccCChhcCHHHHHHHH
Confidence 4689999999999766544443
No 258
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.29 E-value=49 Score=19.09 Aligned_cols=18 Identities=22% Similarity=0.346 Sum_probs=14.2
Q ss_pred CcCCCCCCCeecccchHH
Q 027217 188 DKYCCPICSKSVIDMSRT 205 (226)
Q Consensus 188 ~~~~CPiCrksi~dm~~~ 205 (226)
..|.|++|.+++...+..
T Consensus 11 k~~~C~~C~k~F~~~~~L 28 (46)
T 2elz_A 11 KPYKCEDCGKGYNRRLNL 28 (46)
T ss_dssp SSCBCSSSCCBCSSHHHH
T ss_pred CCeeCcccCchhCCHHHH
Confidence 468999999999876543
No 259
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.29 E-value=50 Score=18.98 Aligned_cols=17 Identities=29% Similarity=0.548 Sum_probs=13.8
Q ss_pred CcCCCCCCCeecccchH
Q 027217 188 DKYCCPICSKSVIDMSR 204 (226)
Q Consensus 188 ~~~~CPiCrksi~dm~~ 204 (226)
..+.|++|.+++...+.
T Consensus 11 k~~~C~~C~k~F~~~~~ 27 (46)
T 2ytn_A 11 KPYKCNECGKVFTQNSH 27 (46)
T ss_dssp SSCBCTTTCCBCSSHHH
T ss_pred cCeECCCCCCeeCCHHH
Confidence 46899999999987654
No 260
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.27 E-value=43 Score=19.29 Aligned_cols=20 Identities=30% Similarity=0.637 Sum_probs=15.1
Q ss_pred CcCCCCCCCeecccchHHHH
Q 027217 188 DKYCCPICSKSVIDMSRTWK 207 (226)
Q Consensus 188 ~~~~CPiCrksi~dm~~~~~ 207 (226)
..+.|++|.+++...+...+
T Consensus 11 k~~~C~~C~k~f~~~~~L~~ 30 (46)
T 2ep3_A 11 KPYRCAECGKAFTDRSNLFT 30 (46)
T ss_dssp CSEECSSSCCEESSHHHHHH
T ss_pred CCeECCCCCchhCCHHHHHH
Confidence 46899999999987654433
No 261
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.23 E-value=44 Score=19.16 Aligned_cols=20 Identities=20% Similarity=0.290 Sum_probs=15.1
Q ss_pred CcCCCCCCCeecccchHHHH
Q 027217 188 DKYCCPICSKSVIDMSRTWK 207 (226)
Q Consensus 188 ~~~~CPiCrksi~dm~~~~~ 207 (226)
..+.|++|.+++...+...+
T Consensus 11 ~~~~C~~C~k~f~~~~~L~~ 30 (46)
T 2en8_A 11 KSHTCDECGKNFCYISALRI 30 (46)
T ss_dssp SSEECTTTCCEESSHHHHHH
T ss_pred CCeECCCcCcccCCHHHHHH
Confidence 46899999999987654433
No 262
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1
Probab=22.09 E-value=57 Score=19.82 Aligned_cols=14 Identities=21% Similarity=0.752 Sum_probs=8.7
Q ss_pred CCCCCCCeecccch
Q 027217 190 YCCPICSKSVIDMS 203 (226)
Q Consensus 190 ~~CPiCrksi~dm~ 203 (226)
+.||+|.+++...+
T Consensus 31 ~~C~~C~~~f~~~~ 44 (60)
T 2adr_A 31 YPCGLCNRAFTRRD 44 (60)
T ss_dssp EECTTTCCEESSHH
T ss_pred ccCCCCCCccCCHH
Confidence 45777777666543
No 263
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.06 E-value=44 Score=19.17 Aligned_cols=21 Identities=29% Similarity=0.352 Sum_probs=15.5
Q ss_pred CcCCCCCCCeecccchHHHHH
Q 027217 188 DKYCCPICSKSVIDMSRTWKR 208 (226)
Q Consensus 188 ~~~~CPiCrksi~dm~~~~~~ 208 (226)
..|.|++|.+.+...+...+.
T Consensus 11 k~~~C~~C~k~F~~~~~L~~H 31 (44)
T 2epv_A 11 KPYECNECGKAFIWKSLLIVH 31 (44)
T ss_dssp CSEECSSSCCEESSHHHHHHH
T ss_pred cCeECCCCCcccCchHHHHHH
Confidence 468999999999876554333
No 264
>2xzf_A Formamidopyrimidine-DNA glycosylase; hydrolase-DNA complex; HET: VET; 1.80A {Lactococcus lactis subsp} PDB: 1pm5_A* 1xc8_A* 1pji_A* 2xzu_A* 3c58_A* 1tdz_A* 1nnj_A 1kfv_A 1pjj_A*
Probab=21.99 E-value=39 Score=29.11 Aligned_cols=20 Identities=35% Similarity=1.225 Sum_probs=14.7
Q ss_pred cccCCCCCCCc--------ceeecCccc
Q 027217 78 AQVCTNCGVNM--------GEYFCDICK 97 (226)
Q Consensus 78 ~~~C~~Cg~~f--------~~Y~C~~C~ 97 (226)
++.|+.||... +.|||+.|.
T Consensus 242 G~pC~~CG~~I~~~~~~gR~t~~CP~CQ 269 (271)
T 2xzf_A 242 GEKCSRCGAEIQKIKVAGRGTHFCPVCQ 269 (271)
T ss_dssp TSBCTTTCCBCEEEEETTEEEEECTTTS
T ss_pred CCCCCCCCCEeeEEEECCCceEECCCCC
Confidence 36799999887 567777763
No 265
>4esj_A Type-2 restriction enzyme DPNI; restriction endonuclease-DNA complex, type IIM, type IIE, RE enzyme, DPNI; HET: DNA 6MA; 2.05A {Streptococcus pneumoniae}
Probab=21.96 E-value=39 Score=29.48 Aligned_cols=19 Identities=32% Similarity=1.184 Sum_probs=11.3
Q ss_pred ccCCCCCC----------CcceeecCccc
Q 027217 79 QVCTNCGV----------NMGEYFCDICK 97 (226)
Q Consensus 79 ~~C~~Cg~----------~f~~Y~C~~C~ 97 (226)
..||+||. +.+..||..|+
T Consensus 35 ~yCPnCG~~~l~~f~nN~PVaDF~C~~C~ 63 (257)
T 4esj_A 35 SYCPNCGNNPLNHFENNRPVADFYCNHCS 63 (257)
T ss_dssp CCCTTTCCSSCEEC----CCCEEECTTTC
T ss_pred CcCCCCCChhhhhccCCCcccccccCCcc
Confidence 36777776 34555555554
No 266
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=21.95 E-value=50 Score=18.93 Aligned_cols=21 Identities=24% Similarity=0.567 Sum_probs=15.7
Q ss_pred CcCCCCCCCeecccchHHHHH
Q 027217 188 DKYCCPICSKSVIDMSRTWKR 208 (226)
Q Consensus 188 ~~~~CPiCrksi~dm~~~~~~ 208 (226)
..|.|++|.+++...+...+.
T Consensus 9 k~~~C~~C~k~f~~~~~l~~H 29 (45)
T 2epq_A 9 KPYSCPVCGLRFKRKDRMSYH 29 (45)
T ss_dssp CSSEETTTTEECSCHHHHHHH
T ss_pred CCCcCCCCCcccCCHHHHHHH
Confidence 468999999999876554443
No 267
>1k3x_A Endonuclease VIII; hydrolase/DNA, hydrolase-DNA complex; HET: BRU PED; 1.25A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8 PDB: 1k3w_A* 1q39_A 2ea0_A* 2oq4_A* 1q3c_A 2opf_A* 1q3b_A*
Probab=21.74 E-value=40 Score=28.90 Aligned_cols=19 Identities=32% Similarity=0.922 Sum_probs=13.9
Q ss_pred cccCCCCCCCc--------ceeecCcc
Q 027217 78 AQVCTNCGVNM--------GEYFCDIC 96 (226)
Q Consensus 78 ~~~C~~Cg~~f--------~~Y~C~~C 96 (226)
++.|+.||... +.|||+.|
T Consensus 234 g~pC~~CG~~I~~~~~~gR~t~~CP~C 260 (262)
T 1k3x_A 234 GEPCERCGSIIEKTTLSSRPFYWCPGC 260 (262)
T ss_dssp TSBCTTTCCBCEEEEETTEEEEECTTT
T ss_pred cCCCCCCCCEeEEEEECCCCeEECCCC
Confidence 35799999887 55677766
No 268
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.63 E-value=45 Score=19.12 Aligned_cols=20 Identities=20% Similarity=0.409 Sum_probs=15.0
Q ss_pred CcCCCCCCCeecccchHHHH
Q 027217 188 DKYCCPICSKSVIDMSRTWK 207 (226)
Q Consensus 188 ~~~~CPiCrksi~dm~~~~~ 207 (226)
..|.|++|.+++...+..-+
T Consensus 11 k~~~C~~C~k~f~~~~~L~~ 30 (46)
T 2eme_A 11 KPYVCDYCGKAFGLSAELVR 30 (46)
T ss_dssp CSEECSSSCCEESSHHHHHH
T ss_pred CCeECCCCChhhCCHHHHHH
Confidence 46899999999987654333
No 269
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.59 E-value=41 Score=19.02 Aligned_cols=20 Identities=25% Similarity=0.384 Sum_probs=15.2
Q ss_pred CcCCCCCCCeecccchHHHH
Q 027217 188 DKYCCPICSKSVIDMSRTWK 207 (226)
Q Consensus 188 ~~~~CPiCrksi~dm~~~~~ 207 (226)
..|.|++|.+++...+..-+
T Consensus 11 k~~~C~~C~k~f~~~~~L~~ 30 (44)
T 2eof_A 11 KPYECNECQKAFNTKSNLMV 30 (44)
T ss_dssp CSEECTTTCCEESCHHHHHH
T ss_pred CCeECCCCCcccCCHhHHHH
Confidence 46899999999987655433
No 270
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.53 E-value=45 Score=19.18 Aligned_cols=21 Identities=19% Similarity=0.496 Sum_probs=15.8
Q ss_pred CcCCCCCCCeecccchHHHHH
Q 027217 188 DKYCCPICSKSVIDMSRTWKR 208 (226)
Q Consensus 188 ~~~~CPiCrksi~dm~~~~~~ 208 (226)
..+.|++|.+++...+..-+.
T Consensus 11 k~~~C~~C~k~f~~~~~L~~H 31 (46)
T 2enc_A 11 KPFKCEECGKGFYTNSQCYSH 31 (46)
T ss_dssp CSEECSSSCCEESSHHHHHHH
T ss_pred CCcCCCCCCCcCCChHHHHHH
Confidence 468999999999876654443
No 271
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.53 E-value=41 Score=19.40 Aligned_cols=22 Identities=23% Similarity=0.496 Sum_probs=16.3
Q ss_pred CcCCCCCCCeecccchHHHHHH
Q 027217 188 DKYCCPICSKSVIDMSRTWKRI 209 (226)
Q Consensus 188 ~~~~CPiCrksi~dm~~~~~~l 209 (226)
..|.|++|.+++...+..-+.+
T Consensus 11 ~~~~C~~C~k~F~~~~~L~~H~ 32 (46)
T 2em3_A 11 KPYECKVCSKAFTQKAHLAQHQ 32 (46)
T ss_dssp CSEECSSSCCEESSHHHHHHHH
T ss_pred cCeECCCCCcccCCHHHHHHHH
Confidence 4689999999999766544443
No 272
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.50 E-value=38 Score=19.02 Aligned_cols=17 Identities=29% Similarity=0.512 Sum_probs=13.6
Q ss_pred CcCCCCCCCeecccchH
Q 027217 188 DKYCCPICSKSVIDMSR 204 (226)
Q Consensus 188 ~~~~CPiCrksi~dm~~ 204 (226)
..+.|++|.+++...+.
T Consensus 9 k~~~C~~C~k~f~~~~~ 25 (41)
T 2ept_A 9 RVYECQECGKSFRQKGS 25 (41)
T ss_dssp CCEECSSSCCEESSHHH
T ss_pred CCeECCCCCCCcCCHHH
Confidence 46899999999986544
No 273
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.49 E-value=46 Score=19.17 Aligned_cols=18 Identities=22% Similarity=0.586 Sum_probs=14.2
Q ss_pred CcCCCCCCCeecccchHH
Q 027217 188 DKYCCPICSKSVIDMSRT 205 (226)
Q Consensus 188 ~~~~CPiCrksi~dm~~~ 205 (226)
..|.|++|.+++...+..
T Consensus 11 k~~~C~~C~k~f~~~~~L 28 (46)
T 2eml_A 11 KPYECSVCGKAFSHRQSL 28 (46)
T ss_dssp CSEECSSSCCEESSHHHH
T ss_pred CCeeCCCcCCccCCHHHH
Confidence 468999999999876543
No 274
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.49 E-value=46 Score=19.10 Aligned_cols=21 Identities=24% Similarity=0.376 Sum_probs=15.7
Q ss_pred CcCCCCCCCeecccchHHHHH
Q 027217 188 DKYCCPICSKSVIDMSRTWKR 208 (226)
Q Consensus 188 ~~~~CPiCrksi~dm~~~~~~ 208 (226)
..|.|++|.+++...+..-+-
T Consensus 11 k~~~C~~C~k~f~~~~~L~~H 31 (46)
T 2emm_A 11 RPHKCNECGKSFIQSAHLIQH 31 (46)
T ss_dssp CSEECSSSCCEESSHHHHHHH
T ss_pred CCeeCCCCChhhCCHHHHHHH
Confidence 468999999999876654443
No 275
>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.47 E-value=42 Score=19.38 Aligned_cols=18 Identities=17% Similarity=0.290 Sum_probs=14.3
Q ss_pred CcCCCCCCCeecccchHH
Q 027217 188 DKYCCPICSKSVIDMSRT 205 (226)
Q Consensus 188 ~~~~CPiCrksi~dm~~~ 205 (226)
..|.|++|.+++...+..
T Consensus 11 k~~~C~~C~k~f~~~~~L 28 (46)
T 2eoy_A 11 KCFKCNKCEKTFSCSKYL 28 (46)
T ss_dssp CCEECSSSCCEESSSHHH
T ss_pred CCEECcCCCCcCCCHHHH
Confidence 468999999999876543
No 276
>1k82_A Formamidopyrimidine-DNA glycosylase; protein-DNA complex, DNA repair, beta sandwich, zinc finger, helix two-turns helix, hydrolase/DNA complex; HET: PED; 2.10A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=21.44 E-value=41 Score=28.98 Aligned_cols=19 Identities=26% Similarity=1.062 Sum_probs=14.2
Q ss_pred cccCCCCCCCc--------ceeecCcc
Q 027217 78 AQVCTNCGVNM--------GEYFCDIC 96 (226)
Q Consensus 78 ~~~C~~Cg~~f--------~~Y~C~~C 96 (226)
++.|+.||... +.|||+.|
T Consensus 240 g~pC~~CG~~I~~~~~~gR~t~~CP~C 266 (268)
T 1k82_A 240 GEPCRVCGTPIVATKHAQRATFYCRQC 266 (268)
T ss_dssp TSBCTTTCCBCEEEEETTEEEEECTTT
T ss_pred CCCCCCCCCEeeEEEECCCceEECCCC
Confidence 36799999887 55677766
No 277
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.34 E-value=44 Score=19.31 Aligned_cols=21 Identities=24% Similarity=0.313 Sum_probs=15.4
Q ss_pred CcCCCCCCCeecccchHHHHH
Q 027217 188 DKYCCPICSKSVIDMSRTWKR 208 (226)
Q Consensus 188 ~~~~CPiCrksi~dm~~~~~~ 208 (226)
..|.|++|.+++...+..-+.
T Consensus 11 k~~~C~~C~k~f~~~~~L~~H 31 (46)
T 2em4_A 11 RPYECIECGKAFKTKSSLICH 31 (46)
T ss_dssp SSEECSSSCCEESSHHHHHHH
T ss_pred cCcCCCCCCCccCCHHHHHHH
Confidence 468899999999876554443
No 278
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.30 E-value=41 Score=22.78 Aligned_cols=38 Identities=21% Similarity=0.395 Sum_probs=26.8
Q ss_pred CCCCccchhhcccCCcceeeeccCCccCHHHHHHHHhcCcCCCCCCCeecc
Q 027217 150 HHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVI 200 (226)
Q Consensus 150 ~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~ 200 (226)
...|+.|.+.+.. +.+ ..=|..+|..|| +|-.|++.|.
T Consensus 15 ~~~C~~C~~~I~~--~~~--~a~~~~~H~~CF---------~C~~C~~~L~ 52 (79)
T 1x62_A 15 LPMCDKCGTGIVG--VFV--KLRDRHRHPECY---------VCTDCGTNLK 52 (79)
T ss_dssp CCCCSSSCCCCCS--SCE--ECSSCEECTTTT---------SCSSSCCCHH
T ss_pred CCccccCCCCccC--cEE--EECcceeCcCcC---------eeCCCCCCCC
Confidence 4579999988764 222 334788998876 5777888775
No 279
>1ee8_A MUTM (FPG) protein; beta sandwich, zinc finger, helix two-turns helix, riken STR genomics/proteomics initiative, RSGI, structural genomics; 1.90A {Thermus thermophilus} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=21.26 E-value=41 Score=28.95 Aligned_cols=20 Identities=35% Similarity=0.994 Sum_probs=14.4
Q ss_pred cccCCCCCCCc--------ceeecCccc
Q 027217 78 AQVCTNCGVNM--------GEYFCDICK 97 (226)
Q Consensus 78 ~~~C~~Cg~~f--------~~Y~C~~C~ 97 (226)
++.|+.||... +.|||+.|.
T Consensus 235 g~pC~~CG~~I~~~~~~gR~t~~CP~CQ 262 (266)
T 1ee8_A 235 GLPCPACGRPVERRVVAGRGTHFCPTCQ 262 (266)
T ss_dssp TSBCTTTCCBCEEEESSSCEEEECTTTT
T ss_pred CCCCCCCCCEeeEEEECCCceEECCCCC
Confidence 36799998887 556676664
No 280
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.26 E-value=47 Score=19.11 Aligned_cols=18 Identities=28% Similarity=0.434 Sum_probs=14.2
Q ss_pred CcCCCCCCCeecccchHH
Q 027217 188 DKYCCPICSKSVIDMSRT 205 (226)
Q Consensus 188 ~~~~CPiCrksi~dm~~~ 205 (226)
..|.|++|.+++...+..
T Consensus 11 k~~~C~~C~k~F~~~~~L 28 (46)
T 2eq0_A 11 KPYKCHECGKVFRRNSHL 28 (46)
T ss_dssp CCEECTTTCCEESSHHHH
T ss_pred CCeECCCCCchhCCHHHH
Confidence 468999999999876543
No 281
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=21.17 E-value=49 Score=22.82 Aligned_cols=9 Identities=33% Similarity=1.158 Sum_probs=5.4
Q ss_pred CeeccCCCC
Q 027217 106 GQFHCDDCG 114 (226)
Q Consensus 106 ~~yHC~~Cg 114 (226)
.+..|+.||
T Consensus 37 ~~iRC~~CG 45 (63)
T 3h0g_L 37 EVIRCRECG 45 (63)
T ss_dssp SCCCCSSSC
T ss_pred CceECCCCC
Confidence 455666666
No 282
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.02 E-value=40 Score=19.53 Aligned_cols=21 Identities=24% Similarity=0.392 Sum_probs=15.4
Q ss_pred CcCCCCCCCeecccchHHHHH
Q 027217 188 DKYCCPICSKSVIDMSRTWKR 208 (226)
Q Consensus 188 ~~~~CPiCrksi~dm~~~~~~ 208 (226)
..|.|++|.+++...+..-+-
T Consensus 11 k~~~C~~C~k~f~~~~~L~~H 31 (46)
T 2yto_A 11 KPYKCSDCGKAFTRKSGLHIH 31 (46)
T ss_dssp CCEECSSSCCEESSHHHHHHH
T ss_pred CCEECcccCCccCCHhHHHHH
Confidence 468999999999876554433
No 283
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.99 E-value=47 Score=19.19 Aligned_cols=18 Identities=22% Similarity=0.473 Sum_probs=14.3
Q ss_pred CcCCCCCCCeecccchHH
Q 027217 188 DKYCCPICSKSVIDMSRT 205 (226)
Q Consensus 188 ~~~~CPiCrksi~dm~~~ 205 (226)
..|.|++|.+++...+..
T Consensus 11 k~~~C~~C~k~f~~~~~L 28 (46)
T 2yth_A 11 KPFQCEECGKRFTQNSHL 28 (46)
T ss_dssp SSBCCSSSCCCBSSHHHH
T ss_pred cCCCCCCCCcccCCHHHH
Confidence 468999999999876543
No 284
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=20.94 E-value=20 Score=24.53 Aligned_cols=39 Identities=21% Similarity=0.615 Sum_probs=20.8
Q ss_pred CCCccchhhcccCCcceeeeccCCccCHHHHHHHHhcCcCCCCCCCeeccc
Q 027217 151 HHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVID 201 (226)
Q Consensus 151 ~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~d 201 (226)
..|+.|.+.+... +.+ ..=|..+|..|| +|-.|+++|.+
T Consensus 8 ~~C~~C~~~I~~~-~~~--~a~~~~~H~~CF---------~C~~C~~~L~~ 46 (81)
T 1a7i_A 8 NKCGACGRTVYHA-EEV--QCDGRSFHRCCF---------LCMVCRKNLDS 46 (81)
T ss_dssp CBCSSSCCBCSST-TEE--EETTEEEESSSE---------ECSSSCCEECS
T ss_pred CcCcCcCccccCc-eeE--EeCCcccccccC---------ccCCCCCCCCC
Confidence 4566776665432 222 223566666554 45566666643
No 285
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.82 E-value=48 Score=19.06 Aligned_cols=21 Identities=29% Similarity=0.463 Sum_probs=15.9
Q ss_pred CcCCCCCCCeecccchHHHHH
Q 027217 188 DKYCCPICSKSVIDMSRTWKR 208 (226)
Q Consensus 188 ~~~~CPiCrksi~dm~~~~~~ 208 (226)
..|.|++|.+++...+..-+.
T Consensus 11 k~~~C~~C~k~f~~~~~L~~H 31 (46)
T 2ytj_A 11 KPYICAECGKAFTIRSNLIKH 31 (46)
T ss_dssp CSEECSSSCCEESSHHHHHHH
T ss_pred cCeECCCCChhhCCHHHHHHH
Confidence 468999999999876654443
No 286
>2i5o_A DNA polymerase ETA; zinc finger, DNA polymerase,POL ETA, UBZ, ubiquitin-binding zinc finger, translesion synthesis, ubiquitin-binding domain; HET: DNA; NMR {Homo sapiens}
Probab=20.81 E-value=53 Score=20.49 Aligned_cols=27 Identities=19% Similarity=0.258 Sum_probs=19.6
Q ss_pred CcCCCCCCCeecccchHHHHHHHHHHHh
Q 027217 188 DKYCCPICSKSVIDMSRTWKRIDEELQM 215 (226)
Q Consensus 188 ~~~~CPiCrksi~dm~~~~~~lD~~i~~ 215 (226)
..++||-|++.|.. ...-+.+|=.+|.
T Consensus 8 ~~~~C~~C~~~i~~-~~~~EH~D~H~A~ 34 (39)
T 2i5o_A 8 DQVPCEKCGSLVPV-WDMPEHMDYHFAL 34 (39)
T ss_dssp CEEECTTTCCEEEG-GGHHHHHHHHHHH
T ss_pred CCcccccccCcCCc-ccccchhhHHHHH
Confidence 36789999999876 4456677766653
No 287
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.75 E-value=51 Score=18.73 Aligned_cols=18 Identities=11% Similarity=0.444 Sum_probs=14.5
Q ss_pred CcCCCCCCCeecccchHH
Q 027217 188 DKYCCPICSKSVIDMSRT 205 (226)
Q Consensus 188 ~~~~CPiCrksi~dm~~~ 205 (226)
..|.|++|.+++...+..
T Consensus 11 k~~~C~~C~k~f~~~~~L 28 (44)
T 2yu5_A 11 NPFKCSKCDRVFTQRNYL 28 (44)
T ss_dssp CSEECSSSSCEESSSHHH
T ss_pred CCeECCCCCchhCCHHHH
Confidence 468999999999876543
No 288
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=20.69 E-value=47 Score=25.85 Aligned_cols=10 Identities=30% Similarity=0.700 Sum_probs=5.3
Q ss_pred eeEeCCCCcc
Q 027217 65 QVICSVCDTE 74 (226)
Q Consensus 65 ~v~Cg~C~~~ 74 (226)
...|..|+.+
T Consensus 70 ~~~C~~CG~~ 79 (139)
T 3a43_A 70 VFKCRNCNYE 79 (139)
T ss_dssp EEEETTTCCE
T ss_pred cEECCCCCCE
Confidence 4555555544
No 289
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.65 E-value=49 Score=18.97 Aligned_cols=18 Identities=22% Similarity=0.516 Sum_probs=14.1
Q ss_pred CcCCCCCCCeecccchHH
Q 027217 188 DKYCCPICSKSVIDMSRT 205 (226)
Q Consensus 188 ~~~~CPiCrksi~dm~~~ 205 (226)
..+.|++|.+++...+..
T Consensus 11 ~~~~C~~C~k~f~~~~~L 28 (46)
T 2yrj_A 11 KPYRCGECGKAFAQKANL 28 (46)
T ss_dssp CCEECSSSCCEESSHHHH
T ss_pred CCeECCCCCCccCCHHHH
Confidence 468999999999875543
No 290
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=20.64 E-value=45 Score=23.14 Aligned_cols=40 Identities=18% Similarity=0.356 Sum_probs=25.8
Q ss_pred CCCCCccchhhcccCCcceeeeccCCccCHHHHHHHHhcCcCCCCCCCeeccc
Q 027217 149 MHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVID 201 (226)
Q Consensus 149 ~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~d 201 (226)
....|..|.+.+.. +.+ ..=|..+|..|| +|-.|++.|.+
T Consensus 24 ~~~~C~~C~~~I~~--~~~--~a~~~~~H~~CF---------~C~~C~~~L~~ 63 (89)
T 1x64_A 24 RMPLCDKCGSGIVG--AVV--KARDKYRHPECF---------VCADCNLNLKQ 63 (89)
T ss_dssp SCCBCTTTCCBCCS--CCE--ESSSCEECTTTC---------CCSSSCCCTTT
T ss_pred cCCCcccCCCEecc--cEE--EECCceECccCC---------EecCCCCCCCC
Confidence 34568888887664 222 234678888775 56677777754
No 291
>2djr_A Zinc finger BED domain-containing protein 2; C2H2 type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.43 E-value=87 Score=22.17 Aligned_cols=35 Identities=23% Similarity=0.448 Sum_probs=26.8
Q ss_pred cCCCCCCCeecc-------cchHHHHHHH----HHHHhCCCCCCCC
Q 027217 189 KYCCPICSKSVI-------DMSRTWKRID----EELQMNSSIFFPS 223 (226)
Q Consensus 189 ~~~CPiCrksi~-------dm~~~~~~lD----~~i~~~pm~~~~~ 223 (226)
.-+|.+|++.|. ..+..|+.|. .||+..+-++.|.
T Consensus 28 ~A~Ck~C~k~ls~g~~s~~GTS~L~rHL~~~H~~e~~~~~~~~~~~ 73 (76)
T 2djr_A 28 YATCRLCGRQVSRGPGVNVGTTALWKHLKSMHREELEKSGHGQSGP 73 (76)
T ss_dssp CEEESSSCCBCCCCSSCCSSSCHHHHHHHHTTHHHHHHTTCCCSCT
T ss_pred EEECCCCCCccCCCCCCCCchHHHHHHHHHHCHHHHHhccCCCCCC
Confidence 357999999986 4778999996 4777777777664
No 292
>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.33 E-value=37 Score=19.65 Aligned_cols=21 Identities=19% Similarity=0.547 Sum_probs=15.6
Q ss_pred CcCCCCCCCeecccchHHHHH
Q 027217 188 DKYCCPICSKSVIDMSRTWKR 208 (226)
Q Consensus 188 ~~~~CPiCrksi~dm~~~~~~ 208 (226)
..|.|++|.+++...+..-+-
T Consensus 11 k~~~C~~C~k~f~~~~~L~~H 31 (46)
T 2eoz_A 11 KPYSCNVCGKAFVLSAHLNQH 31 (46)
T ss_dssp CSEEETTTTEEESSHHHHHHH
T ss_pred CCeECcccChhhCCHHHHHHH
Confidence 468899999999876654444
No 293
>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.15 E-value=69 Score=18.21 Aligned_cols=20 Identities=10% Similarity=0.313 Sum_probs=15.2
Q ss_pred CcCCCCCCCeecccchHHHH
Q 027217 188 DKYCCPICSKSVIDMSRTWK 207 (226)
Q Consensus 188 ~~~~CPiCrksi~dm~~~~~ 207 (226)
..|.|++|.+++...+..-+
T Consensus 9 k~~~C~~C~k~f~~~~~L~~ 28 (43)
T 2yrm_A 9 GAFFCNECDCRFSEEASLKR 28 (43)
T ss_dssp CCBCCSSSCCCBSSHHHHHH
T ss_pred CCEECCCCCCeeCChHHHHH
Confidence 46899999999987654433
No 294
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=20.11 E-value=74 Score=21.97 Aligned_cols=51 Identities=24% Similarity=0.510 Sum_probs=31.7
Q ss_pred cCCCCCCCccchhhcccCCcceeee--ccCCccCHHHHHHH-HhcCcCCCCCCCe
Q 027217 146 ENSMHHHCPICYEYLFDSLRNTTVM--KCGHTMHCECYHEM-IKRDKYCCPICSK 197 (226)
Q Consensus 146 e~~~~~~CpICle~lf~s~~~v~~L--pCGH~~H~~C~~~~-l~~~~~~CPiCrk 197 (226)
+...+..|.||.+.-.+. ....++ .|.=.||..|+..- +-.+...||.|..
T Consensus 12 ~~~~~~~C~vC~~~~s~~-~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~ 65 (71)
T 2ku3_A 12 LIDEDAVCSICMDGESQN-SNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQ 65 (71)
T ss_dssp CCCSSCSCSSSCCCCCCS-SSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCC-CCCEEECCCCCCccccccCCCCcCCCCCcCCccCcC
Confidence 345567899998752111 222233 68899999999742 2234667887753
No 295
>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A
Probab=20.09 E-value=71 Score=16.41 Aligned_cols=16 Identities=19% Similarity=0.586 Sum_probs=12.5
Q ss_pred cCCCC--CCCeecccchH
Q 027217 189 KYCCP--ICSKSVIDMSR 204 (226)
Q Consensus 189 ~~~CP--iCrksi~dm~~ 204 (226)
.|.|+ .|.+++...+.
T Consensus 2 p~~C~~~~C~k~f~~~~~ 19 (31)
T 1sp2_A 2 PFMCTWSYCGKRFTRSDE 19 (31)
T ss_dssp CCBCCSTTCCCBCSSHHH
T ss_pred CcCCcCCCCCcccCCHhH
Confidence 37897 99999987654
No 296
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.09 E-value=42 Score=19.34 Aligned_cols=21 Identities=24% Similarity=0.373 Sum_probs=14.9
Q ss_pred CcCCCCCCCeecccchHHHHH
Q 027217 188 DKYCCPICSKSVIDMSRTWKR 208 (226)
Q Consensus 188 ~~~~CPiCrksi~dm~~~~~~ 208 (226)
..|.|++|.+++...+...+.
T Consensus 11 ~~~~C~~C~k~f~~~~~L~~H 31 (46)
T 2en6_A 11 KPYGCNECGKTFSQKSILSAH 31 (46)
T ss_dssp CCEEETTTTEEESSHHHHHHH
T ss_pred cCeECCCCCcccCchHHHHHH
Confidence 457899999998876554443
No 297
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.02 E-value=51 Score=19.01 Aligned_cols=18 Identities=28% Similarity=0.534 Sum_probs=14.2
Q ss_pred CcCCCCCCCeecccchHH
Q 027217 188 DKYCCPICSKSVIDMSRT 205 (226)
Q Consensus 188 ~~~~CPiCrksi~dm~~~ 205 (226)
..|.|++|.+++...+..
T Consensus 11 k~~~C~~C~k~F~~~~~L 28 (46)
T 2ytp_A 11 RHYECSECGKAFARKSTL 28 (46)
T ss_dssp CCEECSSSCCEESSHHHH
T ss_pred CCeECCcCCcccCCHHHH
Confidence 468999999999876543
Done!