Query 027218
Match_columns 226
No_of_seqs 115 out of 336
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 06:43:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027218.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027218hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3077 Uncharacterized conser 100.0 2.8E-65 6.2E-70 448.9 18.7 222 1-226 16-253 (260)
2 PF03556 Cullin_binding: Culli 100.0 4.2E-45 9.2E-50 289.4 10.0 116 104-222 1-117 (117)
3 cd00051 EFh EF-hand, calcium b 94.9 0.16 3.4E-06 32.6 6.6 61 36-96 2-62 (63)
4 cd05031 S-100A10_like S-100A10 94.3 0.24 5.1E-06 37.0 7.0 71 32-102 6-83 (94)
5 PTZ00183 centrin; Provisional 94.1 1.4 3E-05 34.6 11.6 69 30-98 13-81 (158)
6 smart00027 EH Eps15 homology d 93.9 0.3 6.6E-06 36.5 7.0 68 30-99 6-73 (96)
7 PTZ00184 calmodulin; Provision 93.8 2.4 5.1E-05 32.7 15.4 68 31-98 8-75 (149)
8 PF13833 EF-hand_8: EF-hand do 93.6 0.19 4E-06 33.3 4.8 50 49-98 3-53 (54)
9 cd00052 EH Eps15 homology doma 93.5 0.39 8.4E-06 32.5 6.5 61 38-100 3-63 (67)
10 cd05030 calgranulins Calgranul 93.5 0.36 7.7E-06 35.9 6.6 70 31-100 5-81 (88)
11 cd05029 S-100A6 S-100A6: S-100 92.9 0.74 1.6E-05 34.4 7.6 70 31-100 7-81 (88)
12 PTZ00183 centrin; Provisional 92.8 0.7 1.5E-05 36.3 7.9 82 32-114 51-135 (158)
13 PF13499 EF-hand_7: EF-hand do 92.1 0.56 1.2E-05 32.0 5.8 62 35-96 1-66 (66)
14 cd00213 S-100 S-100: S-100 dom 91.9 1.1 2.4E-05 32.6 7.5 69 31-99 5-80 (88)
15 PTZ00184 calmodulin; Provision 91.0 1.3 2.9E-05 34.1 7.5 81 33-113 46-128 (149)
16 KOG3077 Uncharacterized conser 90.5 0.33 7.2E-06 43.7 3.9 85 123-212 79-163 (260)
17 cd05026 S-100Z S-100Z: S-100Z 90.0 1.8 3.8E-05 32.4 7.1 69 32-100 8-83 (93)
18 cd05023 S-100A11 S-100A11: S-1 89.7 2.5 5.4E-05 31.6 7.7 70 31-100 6-82 (89)
19 KOG0036 Predicted mitochondria 89.4 1.3 2.9E-05 42.4 7.2 83 33-118 81-163 (463)
20 cd05022 S-100A13 S-100A13: S-1 87.9 4 8.6E-05 30.7 7.7 69 31-99 5-76 (89)
21 KOG0027 Calmodulin and related 87.7 5 0.00011 32.2 8.8 70 32-101 6-75 (151)
22 cd05027 S-100B S-100B: S-100B 84.5 8 0.00017 28.8 7.8 69 31-99 5-80 (88)
23 cd05025 S-100A1 S-100A1: S-100 84.3 8.4 0.00018 28.3 7.8 68 32-99 7-81 (92)
24 COG5126 FRQ1 Ca2+-binding prot 84.1 11 0.00024 31.6 9.2 85 31-116 17-103 (160)
25 PF09279 EF-hand_like: Phospho 84.1 1.9 4.1E-05 31.2 4.2 63 36-99 2-70 (83)
26 COG5126 FRQ1 Ca2+-binding prot 83.1 5.8 0.00013 33.3 7.2 67 32-98 90-156 (160)
27 TIGR01446 DnaD_dom DnaD and ph 81.7 2.9 6.4E-05 29.5 4.3 56 50-108 15-72 (73)
28 KOG0027 Calmodulin and related 78.1 12 0.00026 30.0 7.3 71 31-101 41-116 (151)
29 PF05517 p25-alpha: p25-alpha 76.1 12 0.00027 30.7 6.9 98 36-133 1-123 (154)
30 PLN02964 phosphatidylserine de 72.8 21 0.00046 36.2 8.9 81 32-116 141-226 (644)
31 PF12763 EF-hand_4: Cytoskelet 71.7 8.5 0.00018 29.8 4.6 67 30-99 6-72 (104)
32 PF13405 EF-hand_6: EF-hand do 71.5 5.3 0.00011 23.5 2.7 30 35-64 1-31 (31)
33 KOG0036 Predicted mitochondria 71.3 35 0.00075 33.1 9.4 90 31-120 11-117 (463)
34 PF14658 EF-hand_9: EF-hand do 70.5 13 0.00029 26.7 5.0 51 48-98 12-64 (66)
35 PF13833 EF-hand_8: EF-hand do 70.5 8.7 0.00019 25.1 3.9 46 84-129 2-49 (54)
36 PF00036 EF-hand_1: EF hand; 67.7 3.9 8.5E-05 24.3 1.6 19 81-99 11-29 (29)
37 KOG0028 Ca2+-binding protein ( 67.2 78 0.0017 26.9 9.9 83 32-114 31-115 (172)
38 cd00252 SPARC_EC SPARC_EC; ext 62.3 57 0.0012 25.6 7.7 62 31-96 45-106 (116)
39 KOG2643 Ca2+ binding protein, 61.6 27 0.00059 34.0 6.7 93 49-154 301-399 (489)
40 KOG0030 Myosin essential light 59.6 41 0.00089 28.0 6.6 67 32-98 9-77 (152)
41 PRK10391 oriC-binding nucleoid 58.9 19 0.00041 26.3 4.0 40 88-129 2-41 (71)
42 KOG0028 Ca2+-binding protein ( 58.6 54 0.0012 27.9 7.2 60 39-98 111-170 (172)
43 PF07531 TAFH: NHR1 homology t 57.0 28 0.00061 26.9 4.9 64 55-124 12-83 (96)
44 KOG0034 Ca2+/calmodulin-depend 54.5 96 0.0021 26.5 8.4 135 33-190 29-173 (187)
45 cd03567 VHS_GGA VHS domain fam 47.7 1.5E+02 0.0033 24.0 9.0 92 38-129 4-129 (139)
46 PF13443 HTH_26: Cro/C1-type H 45.9 13 0.00029 25.0 1.5 22 49-70 36-57 (63)
47 PF05042 Caleosin: Caleosin re 45.8 83 0.0018 26.8 6.5 60 32-91 94-159 (174)
48 cd00052 EH Eps15 homology doma 45.7 50 0.0011 21.7 4.4 32 79-111 8-39 (67)
49 PRK10945 gene expression modul 45.6 31 0.00068 25.3 3.4 40 87-129 6-45 (72)
50 PF12238 MSA-2c: Merozoite sur 44.9 38 0.00083 29.6 4.5 52 17-68 66-119 (205)
51 smart00027 EH Eps15 homology d 42.7 52 0.0011 24.2 4.4 71 64-135 3-74 (96)
52 PF01314 AFOR_C: Aldehyde ferr 41.9 13 0.00027 35.0 1.1 36 56-92 116-151 (382)
53 TIGR01565 homeo_ZF_HD homeobox 40.8 66 0.0014 22.4 4.4 40 30-70 10-49 (58)
54 PLN02964 phosphatidylserine de 39.9 1.4E+02 0.0031 30.4 8.2 64 35-98 180-243 (644)
55 smart00862 Trans_reg_C Transcr 39.6 69 0.0015 21.9 4.4 52 67-119 6-59 (78)
56 PF11116 DUF2624: Protein of u 38.6 1.7E+02 0.0037 22.1 6.8 52 49-100 13-64 (85)
57 PF07848 PaaX: PaaX-like prote 38.1 24 0.00052 25.4 1.9 39 34-72 4-42 (70)
58 PF00046 Homeobox: Homeobox do 34.7 59 0.0013 21.3 3.3 38 30-72 9-46 (57)
59 PLN02230 phosphoinositide phos 33.8 1.1E+02 0.0024 30.9 6.4 66 32-98 27-102 (598)
60 cd05024 S-100A10 S-100A10: A s 32.9 2.2E+02 0.0047 21.6 8.2 68 31-99 5-77 (91)
61 PLN02223 phosphoinositide phos 32.8 89 0.0019 31.2 5.4 66 32-98 14-92 (537)
62 PF00486 Trans_reg_C: Transcri 31.4 91 0.002 21.3 4.0 50 70-120 9-59 (77)
63 PF04659 Arch_fla_DE: Archaeal 29.9 1.2E+02 0.0027 23.4 4.7 52 166-218 22-86 (99)
64 cd05022 S-100A13 S-100A13: S-1 29.3 1.2E+02 0.0026 22.6 4.5 65 70-136 7-78 (89)
65 KOG0041 Predicted Ca2+-binding 28.8 2.1E+02 0.0046 25.4 6.4 68 31-98 96-163 (244)
66 PHA01083 hypothetical protein 28.6 82 0.0018 26.2 3.7 47 49-99 42-88 (149)
67 smart00368 LRR_RI Leucine rich 28.2 63 0.0014 18.7 2.3 17 48-64 11-27 (28)
68 PF06992 Phage_lambda_P: Repli 28.1 90 0.0019 27.8 4.1 31 88-118 66-96 (233)
69 PF12174 RST: RCD1-SRO-TAF4 (R 27.7 43 0.00093 24.2 1.7 16 84-99 39-54 (70)
70 PF06535 RGM_N: Repulsive guid 27.5 18 0.00039 30.5 -0.3 16 199-215 115-130 (161)
71 PF14788 EF-hand_10: EF hand; 26.8 1.9E+02 0.0041 19.8 4.6 48 51-98 2-49 (51)
72 COG0177 Nth Predicted EndoIII- 26.8 63 0.0014 28.3 2.9 36 32-67 47-83 (211)
73 PF01023 S_100: S-100/ICaBP ty 26.5 1.1E+02 0.0023 20.0 3.3 30 32-61 4-35 (44)
74 PF13348 Y_phosphatase3C: Tyro 26.5 26 0.00056 24.3 0.4 53 9-74 11-64 (68)
75 PF08671 SinI: Anti-repressor 26.4 76 0.0017 19.3 2.4 27 167-194 4-30 (30)
76 KOG0037 Ca2+-binding protein, 26.4 2.9E+02 0.0064 24.5 7.0 69 32-100 55-124 (221)
77 smart00549 TAFH TAF homology. 25.9 1.5E+02 0.0033 22.7 4.5 61 56-121 12-79 (92)
78 cd00383 trans_reg_C Effector d 25.7 1.4E+02 0.003 21.2 4.2 56 63-119 20-76 (95)
79 COG2922 Smg Uncharacterized pr 25.5 61 0.0013 27.0 2.4 35 36-70 5-40 (157)
80 PF07261 DnaB_2: Replication i 24.2 9.8 0.00021 26.7 -2.2 21 91-111 55-75 (77)
81 KOG0377 Protein serine/threoni 24.0 3.4E+02 0.0073 27.0 7.4 65 34-98 547-615 (631)
82 PF13624 SurA_N_3: SurA N-term 23.9 78 0.0017 24.9 2.8 60 51-111 84-144 (154)
83 cd03022 DsbA_HCCA_Iso DsbA fam 23.7 1E+02 0.0023 24.8 3.6 38 32-69 102-139 (192)
84 PLN02222 phosphoinositide phos 23.5 1.8E+02 0.0039 29.3 5.8 63 33-98 24-90 (581)
85 smart00054 EFh EF-hand, calciu 23.5 1.2E+02 0.0025 15.3 2.9 16 83-98 13-28 (29)
86 KOG0034 Ca2+/calmodulin-depend 23.0 4.8E+02 0.01 22.2 10.4 99 32-132 67-174 (187)
87 COG3710 CadC DNA-binding winge 22.9 1E+02 0.0023 25.1 3.4 71 63-135 28-103 (148)
88 PF07647 SAM_2: SAM domain (St 22.9 1.9E+02 0.0042 19.3 4.3 59 52-115 5-63 (66)
89 PF07864 DUF1651: Protein of u 22.5 56 0.0012 23.5 1.5 23 140-162 46-68 (75)
90 cd00086 homeodomain Homeodomai 22.5 1.8E+02 0.004 18.6 4.0 38 30-72 9-46 (59)
91 PF04337 DUF480: Protein of un 22.2 87 0.0019 26.1 2.7 56 57-117 78-134 (148)
92 cd04766 HTH_HspR Helix-Turn-He 21.7 1.1E+02 0.0024 22.4 3.1 43 53-119 47-89 (91)
93 PLN02228 Phosphoinositide phos 21.6 2.9E+02 0.0063 27.8 6.8 65 32-98 22-92 (567)
94 KOG1575 Voltage-gated shaker-l 21.2 2.1E+02 0.0045 26.9 5.4 54 52-119 259-313 (336)
95 PF01323 DSBA: DSBA-like thior 20.7 1.6E+02 0.0034 23.7 4.1 39 33-71 103-141 (193)
96 COG3132 Uncharacterized protei 20.4 1.4E+02 0.0031 25.9 3.7 55 57-116 81-140 (215)
No 1
>KOG3077 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=2.8e-65 Score=448.92 Aligned_cols=222 Identities=33% Similarity=0.622 Sum_probs=197.8
Q ss_pred CCCccccccCCCCCch--------h-hHHHhhCC------CCCChhhHHHHHHHHHHhcCCCC-CCCCHHHHHHHHHhhC
Q 027218 1 MRRSVSRKTGQTNSTD--------A-TDLFRSAS------SKASSKEMERIDNLFYSYANKSS-GMIDPEGIESLCSDIE 64 (226)
Q Consensus 1 ~~~~~~~~~~~~~~~~--------A-~d~~~~~~------~~~~~~~~~~l~~lFd~Y~d~~~-~~I~~dG~~~~~~DLg 64 (226)
|+-|++++..|.+.+- | .+.||.++ +.....+..++.++|.+|+|+.+ +.|++|||.+||+|||
T Consensus 16 ~~~~~~~~~~s~~~~~~~dw~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~l~~~f~~y~d~~d~~~i~~dgi~~fc~dlg 95 (260)
T KOG3077|consen 16 MSFTASRKKTSLSCLAACDWNLKYAFNDSYYTNPQSLREESVQARVSEKRLEELFNQYKDPDDDNLIGPDGIEKFCEDLG 95 (260)
T ss_pred cccccccchhhhhhhcccccccchhcccchhcchhHHHHhhhhccccHHHHHHHHHHhcCcccccccChHHHHHHHHHhC
Confidence 5566666655444222 4 33455443 22334578899999999999976 6999999999999999
Q ss_pred CCCCcHHHHHHHHhhCcCccccccHHHHHHHhHHccCCcHHHHHHHhHHHHHHhCCcchhHHHHHhhhhhccCccccccc
Q 027218 65 VSHTDVRILMLAWKMKAEKQGYFTLEEWRRGLKALRADTVNKLKKALPDLEKEVKRPTNFQDFYAFAFRYCLTEEKQKSV 144 (226)
Q Consensus 65 v~~ed~~~LvLa~~l~a~~~g~~tr~eF~~g~~~l~~~sl~~lk~~l~~l~~~l~~~~~Fk~~Y~ftF~~~~~~~~qk~L 144 (226)
|+|+|+++|||||+|+|++||+|||++|+.||.++||+|+++|+..|+.++..|.|.+.|+.||+|||+|+++ +|||+|
T Consensus 96 ~~p~~i~~LvlAwkl~A~~m~~Fsr~ef~~g~~~l~~dS~d~lq~~l~~l~~~l~d~~~Fk~iY~faf~fa~e-~~qk~L 174 (260)
T KOG3077|consen 96 VEPEDISVLVLAWKLGAATMCEFSREEFLKGMTALGCDSIDKLQQRLDFLRSVLKDLEKFKSIYRFAFNFAKE-PGQKSL 174 (260)
T ss_pred CCchhHHHHHHHHHhccchhhhhhHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHccHHHhhHHHHhhhhhccC-cCcCcC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999995 899999
Q ss_pred cHHhHHHHHhhhhCCCChhhHHHHHHHHHhcCCCCcCChhhHHHHHHHHhhcCCCCCCCCCCCCCchhhHHHHHHHHHhh
Q 027218 145 DIESVCELLGLVLGSQYRAQVDYLIEYLKIQSDYKVINMDQWMGFYRFCNEISFPDFNNYDPNLAWPLVLDNFVEWMKAK 224 (226)
Q Consensus 145 ~~d~Ai~~W~llf~~~~~~~l~~W~~Fl~~~~~~k~IskD~W~~~l~F~~~v~~~dls~YDe~~AWP~lIDeFVe~~r~~ 224 (226)
++++||.||+|||+.+++ .++.|++||.++ +++.|+||||||+|+|++++. +++|||||+||||+||||||||+|.+
T Consensus 175 d~~~ai~~w~ll~~~~~p-ll~~w~~FL~~~-~~~~~~KDtW~~~l~Fs~~i~-~dlSnYDeegAWP~liDeFVe~~r~~ 251 (260)
T KOG3077|consen 175 DLETAISLWKLLFGQTPP-LLDQWIQFLKDS-PNRAISKDTWNLLLDFSKTID-PDLSNYDEEGAWPVLIDEFVEYLRDK 251 (260)
T ss_pred CHHHHHHHHHHHhCCCCc-hHHHHHHHHHhC-cCcccCcccHHHHHHHHHhcC-ccccCccccccchHHHHHHHHHHHHh
Confidence 999999999999988875 899999999974 678999999999999999986 99999999999999999999999988
Q ss_pred CC
Q 027218 225 QT 226 (226)
Q Consensus 225 ~~ 226 (226)
++
T Consensus 252 ~~ 253 (260)
T KOG3077|consen 252 QS 253 (260)
T ss_pred cc
Confidence 63
No 2
>PF03556 Cullin_binding: Cullin binding; InterPro: IPR005176 The eukaryotic defective in cullin neddylation (DCN) protein family, may contribute to neddylation of cullin components of SCF-type E3 ubiquitin ligase complexes. These multi-protein complexes are required for polyubiquitination and subsequent degradation of target proteins by the 26S proteasome []. Proteins in the DCN family include: Yeast DCN1. Vertebrate DCN1-like protein 1. Vertebrate DCN1-like protein 2. Vertebrate DCN1-like protein 4. This entry represents a domain found within DCN family proteins. Its function is unknown but it has been suggested that it has the features of a basic helix-loop-helix leucine zipper (bHLH-ZIP) domain [].It is often found in association with a UBA-like domain (IPR009060 from INTERPRO).; PDB: 3TDI_A 2IS9_A 3O6B_E 3O2P_A 3BQ3_A 3TDZ_A 3TDU_B.
Probab=100.00 E-value=4.2e-45 Score=289.44 Aligned_cols=116 Identities=35% Similarity=0.751 Sum_probs=103.3
Q ss_pred HHHHHHHhHHHHHHhC-CcchhHHHHHhhhhhccCccccccccHHhHHHHHhhhhCCCChhhHHHHHHHHHhcCCCCcCC
Q 027218 104 VNKLKKALPDLEKEVK-RPTNFQDFYAFAFRYCLTEEKQKSVDIESVCELLGLVLGSQYRAQVDYLIEYLKIQSDYKVIN 182 (226)
Q Consensus 104 l~~lk~~l~~l~~~l~-~~~~Fk~~Y~ftF~~~~~~~~qk~L~~d~Ai~~W~llf~~~~~~~l~~W~~Fl~~~~~~k~Is 182 (226)
|++||++|++|+++|. |+++|++||+|||+|+|+ +|||+|++|+||+||+|||+++..++++.|++||+++ ++|+||
T Consensus 1 I~~lk~~l~~l~~~l~~d~~~F~~~Y~f~F~~~~~-~~qr~l~~e~Ai~~W~llf~~~~~~~l~~w~~Fl~~~-~~k~Is 78 (117)
T PF03556_consen 1 IDKLKQKLPELRKELRSDPEYFKKFYRFTFDFARE-EGQRSLPLETAIAYWRLLFSGRFFPLLDSWIEFLEEK-YKKAIS 78 (117)
T ss_dssp HHHHHHCHHHHHHHCCHSHHHHHHHHHHHHHHHS--TT-SSEEHHHHHHHHHHHTTTTSSCCHHHHHHHHHHC-T-SEEE
T ss_pred CHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhCC-cccCCCCHHHHHHHHHHHcCCCCcHHHHHHHHHHHHc-CCcCcC
Confidence 6899999999999997 899999999999999996 6999999999999999999988446999999999874 789999
Q ss_pred hhhHHHHHHHHhhcCCCCCCCCCCCCCchhhHHHHHHHHH
Q 027218 183 MDQWMGFYRFCNEISFPDFNNYDPNLAWPLVLDNFVEWMK 222 (226)
Q Consensus 183 kD~W~~~l~F~~~v~~~dls~YDe~~AWP~lIDeFVe~~r 222 (226)
||+|+|+++|+++++ +++++|||+||||+||||||||+|
T Consensus 79 kD~W~~~l~F~~~~~-~dls~Yde~~AWP~liDeFVe~~r 117 (117)
T PF03556_consen 79 KDTWNQFLDFFKTVD-EDLSNYDEEGAWPSLIDEFVEWLR 117 (117)
T ss_dssp HHHHHHHHHHHHH-H-CCHCC--TTSSS-HHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhcC-ccccCCCCCCCCcHHHHHHHHHhC
Confidence 999999999999996 999999999999999999999997
No 3
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=94.93 E-value=0.16 Score=32.63 Aligned_cols=61 Identities=11% Similarity=0.264 Sum_probs=51.3
Q ss_pred HHHHHHHhcCCCCCCCCHHHHHHHHHhhCCCCCcHHHHHHHHhhCcCccccccHHHHHHHh
Q 027218 36 IDNLFYSYANKSSGMIDPEGIESLCSDIEVSHTDVRILMLAWKMKAEKQGYFTLEEWRRGL 96 (226)
Q Consensus 36 l~~lFd~Y~d~~~~~I~~dG~~~~~~DLgv~~ed~~~LvLa~~l~a~~~g~~tr~eF~~g~ 96 (226)
+..+|..|....++.|+.+-+...+..+|..+.+..+-.+..++....-|.++-++|+..+
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 5678998875556889999999999999999887777778888888888999999998754
No 4
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=94.26 E-value=0.24 Score=36.98 Aligned_cols=71 Identities=14% Similarity=0.247 Sum_probs=56.5
Q ss_pred hHHHHHHHHHHhcC-CC-CCCCCHHHHHHHHHh-----hCCCCCcHHHHHHHHhhCcCccccccHHHHHHHhHHccCC
Q 027218 32 EMERIDNLFYSYAN-KS-SGMIDPEGIESLCSD-----IEVSHTDVRILMLAWKMKAEKQGYFTLEEWRRGLKALRAD 102 (226)
Q Consensus 32 ~~~~l~~lFd~Y~d-~~-~~~I~~dG~~~~~~D-----Lgv~~ed~~~LvLa~~l~a~~~g~~tr~eF~~g~~~l~~~ 102 (226)
....|...|..|-+ .. ++.|+.+-+.+++.. +|..+....+--+.-.+....-|.|+.++|+..|..+.+-
T Consensus 6 ~~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~~~~~ 83 (94)
T cd05031 6 AMESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAGLSIA 83 (94)
T ss_pred HHHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHHH
Confidence 45678889999975 43 479999999999876 6778766666666667788889999999999998876653
No 5
>PTZ00183 centrin; Provisional
Probab=94.11 E-value=1.4 Score=34.63 Aligned_cols=69 Identities=16% Similarity=0.281 Sum_probs=55.5
Q ss_pred hhhHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhhCCCCCcHHHHHHHHhhCcCccccccHHHHHHHhHH
Q 027218 30 SKEMERIDNLFYSYANKSSGMIDPEGIESLCSDIEVSHTDVRILMLAWKMKAEKQGYFTLEEWRRGLKA 98 (226)
Q Consensus 30 ~~~~~~l~~lFd~Y~d~~~~~I~~dG~~~~~~DLgv~~ed~~~LvLa~~l~a~~~g~~tr~eF~~g~~~ 98 (226)
+...+++.++|..+-...++.|+.+-+..++.-+|..+....+-.+.-.+....-|.|+.++|+..+..
T Consensus 13 ~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~ 81 (158)
T PTZ00183 13 EDQKKEIREAFDLFDTDGSGTIDPKELKVAMRSLGFEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTK 81 (158)
T ss_pred HHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHH
Confidence 346778899998875444578999999999999998877666666666677778899999999998765
No 6
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=93.89 E-value=0.3 Score=36.49 Aligned_cols=68 Identities=9% Similarity=0.207 Sum_probs=52.9
Q ss_pred hhhHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhhCCCCCcHHHHHHHHhhCcCccccccHHHHHHHhHHc
Q 027218 30 SKEMERIDNLFYSYANKSSGMIDPEGIESLCSDIEVSHTDVRILMLAWKMKAEKQGYFTLEEWRRGLKAL 99 (226)
Q Consensus 30 ~~~~~~l~~lFd~Y~d~~~~~I~~dG~~~~~~DLgv~~ed~~~LvLa~~l~a~~~g~~tr~eF~~g~~~l 99 (226)
+.....+.+.|..+-...++.|+.+-+.+.+..+|++.+.+.-+. -.+....-|.|+.++|+..|..+
T Consensus 6 ~~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~~~~~ev~~i~--~~~d~~~~g~I~~~eF~~~~~~~ 73 (96)
T smart00027 6 PEDKAKYEQIFRSLDKNQDGTVTGAQAKPILLKSGLPQTLLAKIW--NLADIDNDGELDKDEFALAMHLI 73 (96)
T ss_pred HHHHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHcCCCHHHHHHHH--HHhcCCCCCCcCHHHHHHHHHHH
Confidence 346778889999986555689999999999999998766555433 24566778999999999988764
No 7
>PTZ00184 calmodulin; Provisional
Probab=93.83 E-value=2.4 Score=32.68 Aligned_cols=68 Identities=10% Similarity=0.258 Sum_probs=56.5
Q ss_pred hhHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhhCCCCCcHHHHHHHHhhCcCccccccHHHHHHHhHH
Q 027218 31 KEMERIDNLFYSYANKSSGMIDPEGIESLCSDIEVSHTDVRILMLAWKMKAEKQGYFTLEEWRRGLKA 98 (226)
Q Consensus 31 ~~~~~l~~lFd~Y~d~~~~~I~~dG~~~~~~DLgv~~ed~~~LvLa~~l~a~~~g~~tr~eF~~g~~~ 98 (226)
...+.+.+.|..+-...++.|+.+-+..++..+|.++.+..+-.+.-.+....-|.++.++|+..|..
T Consensus 8 ~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 75 (149)
T PTZ00184 8 EQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTLMAR 75 (149)
T ss_pred HHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHH
Confidence 45677888998874444578999999999999999988777777777888888899999999998875
No 8
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=93.62 E-value=0.19 Score=33.35 Aligned_cols=50 Identities=16% Similarity=0.325 Sum_probs=45.5
Q ss_pred CCCCHHHHHHHHHhhCCC-CCcHHHHHHHHhhCcCccccccHHHHHHHhHH
Q 027218 49 GMIDPEGIESLCSDIEVS-HTDVRILMLAWKMKAEKQGYFTLEEWRRGLKA 98 (226)
Q Consensus 49 ~~I~~dG~~~~~~DLgv~-~ed~~~LvLa~~l~a~~~g~~tr~eF~~g~~~ 98 (226)
+.|+.+.+.+.+..+|+. +.+-.+=.|...+....-|.|+.+||+..|+.
T Consensus 3 G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 3 GKITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp SEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred CEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 578999999999889999 88888999999999999999999999998875
No 9
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=93.52 E-value=0.39 Score=32.50 Aligned_cols=61 Identities=13% Similarity=0.226 Sum_probs=46.1
Q ss_pred HHHHHhcCCCCCCCCHHHHHHHHHhhCCCCCcHHHHHHHHhhCcCccccccHHHHHHHhHHcc
Q 027218 38 NLFYSYANKSSGMIDPEGIESLCSDIEVSHTDVRILMLAWKMKAEKQGYFTLEEWRRGLKALR 100 (226)
Q Consensus 38 ~lFd~Y~d~~~~~I~~dG~~~~~~DLgv~~ed~~~LvLa~~l~a~~~g~~tr~eF~~g~~~l~ 100 (226)
++|..+-...++.|+.+.+.+++..+|++.+.+.- +...+....-|.|+.++|+..|....
T Consensus 3 ~~F~~~D~~~~G~i~~~el~~~l~~~g~~~~~~~~--i~~~~d~~~~g~i~~~ef~~~~~~~~ 63 (67)
T cd00052 3 QIFRSLDPDGDGLISGDEARPFLGKSGLPRSVLAQ--IWDLADTDKDGKLDKEEFAIAMHLIA 63 (67)
T ss_pred HHHHHhCCCCCCcCcHHHHHHHHHHcCCCHHHHHH--HHHHhcCCCCCcCCHHHHHHHHHHHH
Confidence 57888754445899999999999999985444333 34456667789999999999987653
No 10
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=93.47 E-value=0.36 Score=35.90 Aligned_cols=70 Identities=16% Similarity=0.229 Sum_probs=52.3
Q ss_pred hhHHHHHHHHHHhcCCC--CCCCCHHHHHHHHH-hhCCCCC----cHHHHHHHHhhCcCccccccHHHHHHHhHHcc
Q 027218 31 KEMERIDNLFYSYANKS--SGMIDPEGIESLCS-DIEVSHT----DVRILMLAWKMKAEKQGYFTLEEWRRGLKALR 100 (226)
Q Consensus 31 ~~~~~l~~lFd~Y~d~~--~~~I~~dG~~~~~~-DLgv~~e----d~~~LvLa~~l~a~~~g~~tr~eF~~g~~~l~ 100 (226)
+....|..+|.+|+..+ .+.|+.+.+..++. .+|-.+. +..+--+...+....-|.|+-++|+..+..+.
T Consensus 5 ~~i~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~~ 81 (88)
T cd05030 5 KAIETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKVG 81 (88)
T ss_pred HHHHHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHHH
Confidence 45678889999999764 37899999999997 4543332 34444455566777789999999999988753
No 11
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=92.88 E-value=0.74 Score=34.41 Aligned_cols=70 Identities=17% Similarity=0.265 Sum_probs=55.4
Q ss_pred hhHHHHHHHHHHhcCC-C-CCCCCHHHHHHHHHh---hCCCCCcHHHHHHHHhhCcCccccccHHHHHHHhHHcc
Q 027218 31 KEMERIDNLFYSYANK-S-SGMIDPEGIESLCSD---IEVSHTDVRILMLAWKMKAEKQGYFTLEEWRRGLKALR 100 (226)
Q Consensus 31 ~~~~~l~~lFd~Y~d~-~-~~~I~~dG~~~~~~D---Lgv~~ed~~~LvLa~~l~a~~~g~~tr~eF~~g~~~l~ 100 (226)
+....|.++|.+|... . .+.|+.+.+.+++.. +|..+.+-.+--+-..+....-|.|+-+||+.-|..+-
T Consensus 7 ~~~~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l~ 81 (88)
T cd05029 7 QAIGLLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGALA 81 (88)
T ss_pred HHHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHH
Confidence 3567788999999863 2 468999999999974 68777666666666677888899999999998877653
No 12
>PTZ00183 centrin; Provisional
Probab=92.84 E-value=0.7 Score=36.34 Aligned_cols=82 Identities=22% Similarity=0.274 Sum_probs=47.0
Q ss_pred hHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhh--CCCCCcHHHHHHHHhhCcCccccccHHHHHHHhHHccC-CcHHHHH
Q 027218 32 EMERIDNLFYSYANKSSGMIDPEGIESLCSDI--EVSHTDVRILMLAWKMKAEKQGYFTLEEWRRGLKALRA-DTVNKLK 108 (226)
Q Consensus 32 ~~~~l~~lFd~Y~d~~~~~I~~dG~~~~~~DL--gv~~ed~~~LvLa~~l~a~~~g~~tr~eF~~g~~~l~~-~sl~~lk 108 (226)
....+..+|..+-...++.|+.+..+.++... +..+++ .+--+...+....-|.+++++|...+..+|. -+-..++
T Consensus 51 ~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~-~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~l~~~~~~ 129 (158)
T PTZ00183 51 KKEEIKQMIADVDKDGSGKIDFEEFLDIMTKKLGERDPRE-EILKAFRLFDDDKTGKISLKNLKRVAKELGETITDEELQ 129 (158)
T ss_pred CHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHhcCCCcHH-HHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHH
Confidence 34567777777754445678888777766543 112222 1212223445555788888888888887663 2334455
Q ss_pred HHhHHH
Q 027218 109 KALPDL 114 (226)
Q Consensus 109 ~~l~~l 114 (226)
..+..+
T Consensus 130 ~~~~~~ 135 (158)
T PTZ00183 130 EMIDEA 135 (158)
T ss_pred HHHHHh
Confidence 555444
No 13
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=92.14 E-value=0.56 Score=32.02 Aligned_cols=62 Identities=15% Similarity=0.300 Sum_probs=44.7
Q ss_pred HHHHHHHHhcCCCCCCCCHHHHHHHHHhhCCCCCc--H--HHHHHHHhhCcCccccccHHHHHHHh
Q 027218 35 RIDNLFYSYANKSSGMIDPEGIESLCSDIEVSHTD--V--RILMLAWKMKAEKQGYFTLEEWRRGL 96 (226)
Q Consensus 35 ~l~~lFd~Y~d~~~~~I~~dG~~~~~~DLgv~~ed--~--~~LvLa~~l~a~~~g~~tr~eF~~g~ 96 (226)
+|.++|+.|=...++.|+.+-+.+++..+|....+ + .+--+...+-...-|.|+.+||++.|
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 47789999965556899999999999999987522 1 12222334456668999999998754
No 14
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=91.94 E-value=1.1 Score=32.58 Aligned_cols=69 Identities=14% Similarity=0.225 Sum_probs=51.8
Q ss_pred hhHHHHHHHHHHhcC--CCCCCCCHHHHHHHHHh-hCCCC----CcHHHHHHHHhhCcCccccccHHHHHHHhHHc
Q 027218 31 KEMERIDNLFYSYAN--KSSGMIDPEGIESLCSD-IEVSH----TDVRILMLAWKMKAEKQGYFTLEEWRRGLKAL 99 (226)
Q Consensus 31 ~~~~~l~~lFd~Y~d--~~~~~I~~dG~~~~~~D-Lgv~~----ed~~~LvLa~~l~a~~~g~~tr~eF~~g~~~l 99 (226)
...+.+.+.|..|-. ..++.|+.+.+.+++.. +|..+ ....+=-+.-.+....-|.|+-++|+..+..+
T Consensus 5 ~~~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~ 80 (88)
T cd00213 5 KAIETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGKL 80 (88)
T ss_pred HHHHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHH
Confidence 456778889999976 45589999999999976 56433 23444445556677788999999999988765
No 15
>PTZ00184 calmodulin; Provisional
Probab=91.02 E-value=1.3 Score=34.10 Aligned_cols=81 Identities=12% Similarity=0.204 Sum_probs=49.2
Q ss_pred HHHHHHHHHHhcCCCCCCCCHHHHHHHHHhh-CCCCCcHHHHHHHHhhCcCccccccHHHHHHHhHHccCC-cHHHHHHH
Q 027218 33 MERIDNLFYSYANKSSGMIDPEGIESLCSDI-EVSHTDVRILMLAWKMKAEKQGYFTLEEWRRGLKALRAD-TVNKLKKA 110 (226)
Q Consensus 33 ~~~l~~lFd~Y~d~~~~~I~~dG~~~~~~DL-gv~~ed~~~LvLa~~l~a~~~g~~tr~eF~~g~~~l~~~-sl~~lk~~ 110 (226)
...+.++|..+-.+.++.|+.+-...++... ........+-.+...+....-|.+++++|...+...|.. +-+.++..
T Consensus 46 ~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~ 125 (149)
T PTZ00184 46 EAELQDMINEVDADGNGTIDFPEFLTLMARKMKDTDSEEEIKEAFKVFDRDGNGFISAAELRHVMTNLGEKLTDEEVDEM 125 (149)
T ss_pred HHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhccCCcHHHHHHHHHHhhCCCCCCeEeHHHHHHHHHHHCCCCCHHHHHHH
Confidence 4567788887765555788888766666543 222222222333334455567999999999999888754 33444444
Q ss_pred hHH
Q 027218 111 LPD 113 (226)
Q Consensus 111 l~~ 113 (226)
+..
T Consensus 126 ~~~ 128 (149)
T PTZ00184 126 IRE 128 (149)
T ss_pred HHh
Confidence 443
No 16
>KOG3077 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.46 E-value=0.33 Score=43.69 Aligned_cols=85 Identities=8% Similarity=0.001 Sum_probs=63.0
Q ss_pred hhHHHHHhhhhhccCccccccccHHhHHHHHhhhhCCCChhhHHHHHHHHHhcCCCCcCChhhHHHHHHHHhhcCCCCCC
Q 027218 123 NFQDFYAFAFRYCLTEEKQKSVDIESVCELLGLVLGSQYRAQVDYLIEYLKIQSDYKVINMDQWMGFYRFCNEISFPDFN 202 (226)
Q Consensus 123 ~Fk~~Y~ftF~~~~~~~~qk~L~~d~Ai~~W~llf~~~~~~~l~~W~~Fl~~~~~~k~IskD~W~~~l~F~~~v~~~dls 202 (226)
.+.-.|...+.|+.+ -|....++.++|-.|++- ..++. .+..|+-+-. -+.-..+|-|+|++.++|.+++- .|++
T Consensus 79 ~~~i~~dgi~~fc~d-lg~~p~~i~~LvlAwkl~-A~~m~-~Fsr~ef~~g-~~~l~~dS~d~lq~~l~~l~~~l-~d~~ 153 (260)
T KOG3077|consen 79 DNLIGPDGIEKFCED-LGVEPEDISVLVLAWKLG-AATMC-EFSREEFLKG-MTALGCDSIDKLQQRLDFLRSVL-KDLE 153 (260)
T ss_pred ccccChHHHHHHHHH-hCCCchhHHHHHHHHHhc-cchhh-hhhHHHHHHH-HHHcCCCcHHHHHHHHHHHHHHH-ccHH
Confidence 378889999999985 699999999999999998 66654 3444432221 12346899999999999998875 5777
Q ss_pred CCCCCCCchh
Q 027218 203 NYDPNLAWPL 212 (226)
Q Consensus 203 ~YDe~~AWP~ 212 (226)
.|++-.+||.
T Consensus 154 ~Fk~iY~faf 163 (260)
T KOG3077|consen 154 KFKSIYRFAF 163 (260)
T ss_pred HhhHHHHhhh
Confidence 7766555544
No 17
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=89.99 E-value=1.8 Score=32.44 Aligned_cols=69 Identities=13% Similarity=0.232 Sum_probs=51.4
Q ss_pred hHHHHHHHHHHhcCCCC-C-CCCHHHHHHHHHh-h----CCCCCcHHHHHHHHhhCcCccccccHHHHHHHhHHcc
Q 027218 32 EMERIDNLFYSYANKSS-G-MIDPEGIESLCSD-I----EVSHTDVRILMLAWKMKAEKQGYFTLEEWRRGLKALR 100 (226)
Q Consensus 32 ~~~~l~~lFd~Y~d~~~-~-~I~~dG~~~~~~D-L----gv~~ed~~~LvLa~~l~a~~~g~~tr~eF~~g~~~l~ 100 (226)
....|.+.|.+|.+.+. + .|+.+-+.+++.. + +-.+.+-.+=-+...+....-|.|+-+||+.-+..+-
T Consensus 8 a~~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l~ 83 (93)
T cd05026 8 AMDTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAALT 83 (93)
T ss_pred HHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHH
Confidence 45666677999997654 3 5999999999976 3 3333444555566677778889999999999887764
No 18
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=89.74 E-value=2.5 Score=31.63 Aligned_cols=70 Identities=14% Similarity=0.176 Sum_probs=51.9
Q ss_pred hhHHHHHHHHHHhcCCCC--CCCCHHHHHHHHHhh-----CCCCCcHHHHHHHHhhCcCccccccHHHHHHHhHHcc
Q 027218 31 KEMERIDNLFYSYANKSS--GMIDPEGIESLCSDI-----EVSHTDVRILMLAWKMKAEKQGYFTLEEWRRGLKALR 100 (226)
Q Consensus 31 ~~~~~l~~lFd~Y~d~~~--~~I~~dG~~~~~~DL-----gv~~ed~~~LvLa~~l~a~~~g~~tr~eF~~g~~~l~ 100 (226)
.....|.++|.+|.+.+. +.|+.+.+..+++.- +-..++..+--+.-.+....=|.|+-+||+.-+..+-
T Consensus 6 ~~i~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l~ 82 (89)
T cd05023 6 RCIESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGLA 82 (89)
T ss_pred HHHHHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHHH
Confidence 467789999999987654 379999999999865 3223334444455566777789999999998777653
No 19
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=89.42 E-value=1.3 Score=42.43 Aligned_cols=83 Identities=20% Similarity=0.266 Sum_probs=62.7
Q ss_pred HHHHHHHHHHhcCCCCCCCCHHHHHHHHHhhCCCCCcHHHHHHHHhhCcCccccccHHHHHHHhHHccCCcHHHHHHHhH
Q 027218 33 MERIDNLFYSYANKSSGMIDPEGIESLCSDIEVSHTDVRILMLAWKMKAEKQGYFTLEEWRRGLKALRADTVNKLKKALP 112 (226)
Q Consensus 33 ~~~l~~lFd~Y~d~~~~~I~~dG~~~~~~DLgv~~ed~~~LvLa~~l~a~~~g~~tr~eF~~g~~~l~~~sl~~lk~~l~ 112 (226)
..+|-.+|.+-.-..+..|++..|.++|.|+||++.|...--+..+|--..-+.|+.+||.+-+.-.- .+.|...+.
T Consensus 81 E~~l~~~F~~iD~~hdG~i~~~Ei~~~l~~~gi~l~de~~~k~~e~~d~~g~~~I~~~e~rd~~ll~p---~s~i~di~~ 157 (463)
T KOG0036|consen 81 ELELYRIFQSIDLEHDGKIDPNEIWRYLKDLGIQLSDEKAAKFFEHMDKDGKATIDLEEWRDHLLLYP---ESDLEDIYD 157 (463)
T ss_pred HHHHHHHHhhhccccCCccCHHHHHHHHHHhCCccCHHHHHHHHHHhccCCCeeeccHHHHhhhhcCC---hhHHHHHHH
Confidence 44555666666544568899999999999999999999988888888877888999999998765544 444555555
Q ss_pred HHHHHh
Q 027218 113 DLEKEV 118 (226)
Q Consensus 113 ~l~~~l 118 (226)
.|+..+
T Consensus 158 ~W~h~~ 163 (463)
T KOG0036|consen 158 FWRHVL 163 (463)
T ss_pred hhhhhe
Confidence 555543
No 20
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=87.91 E-value=4 Score=30.66 Aligned_cols=69 Identities=12% Similarity=0.138 Sum_probs=53.1
Q ss_pred hhHHHHHHHHHHhcC-CCCCCCCHHHHHHHHHh-hCCCCCc-HHHHHHHHhhCcCccccccHHHHHHHhHHc
Q 027218 31 KEMERIDNLFYSYAN-KSSGMIDPEGIESLCSD-IEVSHTD-VRILMLAWKMKAEKQGYFTLEEWRRGLKAL 99 (226)
Q Consensus 31 ~~~~~l~~lFd~Y~d-~~~~~I~~dG~~~~~~D-Lgv~~ed-~~~LvLa~~l~a~~~g~~tr~eF~~g~~~l 99 (226)
.....|.+.|..|.. ..++.|+.+.+..++.. ||-...+ -.+=-+...+....=|.|+-+||+.-|..+
T Consensus 5 ~ai~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l 76 (89)
T cd05022 5 KAIETLVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGEL 76 (89)
T ss_pred HHHHHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 356788899999976 55689999999999998 9844444 344444455677778999999999887765
No 21
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=87.71 E-value=5 Score=32.21 Aligned_cols=70 Identities=14% Similarity=0.261 Sum_probs=62.0
Q ss_pred hHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhhCCCCCcHHHHHHHHhhCcCccccccHHHHHHHhHHccC
Q 027218 32 EMERIDNLFYSYANKSSGMIDPEGIESLCSDIEVSHTDVRILMLAWKMKAEKQGYFTLEEWRRGLKALRA 101 (226)
Q Consensus 32 ~~~~l~~lFd~Y~d~~~~~I~~dG~~~~~~DLgv~~ed~~~LvLa~~l~a~~~g~~tr~eF~~g~~~l~~ 101 (226)
....+.+.|..+-...++.|..+=+...+..||.+|..-.+-.+-..+....-|.|+.++|+.-|...+.
T Consensus 6 ~~~el~~~F~~fD~d~~G~i~~~el~~~lr~lg~~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~ 75 (151)
T KOG0027|consen 6 QILELKEAFQLFDKDGDGKISVEELGAVLRSLGQNPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGE 75 (151)
T ss_pred HHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhc
Confidence 5677888999996555689999999999999999999999999999999999999999999999887654
No 22
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=84.47 E-value=8 Score=28.77 Aligned_cols=69 Identities=12% Similarity=0.219 Sum_probs=52.3
Q ss_pred hhHHHHHHHHHHhcC-CCCC-CCCHHHHHHHHHh-----hCCCCCcHHHHHHHHhhCcCccccccHHHHHHHhHHc
Q 027218 31 KEMERIDNLFYSYAN-KSSG-MIDPEGIESLCSD-----IEVSHTDVRILMLAWKMKAEKQGYFTLEEWRRGLKAL 99 (226)
Q Consensus 31 ~~~~~l~~lFd~Y~d-~~~~-~I~~dG~~~~~~D-----Lgv~~ed~~~LvLa~~l~a~~~g~~tr~eF~~g~~~l 99 (226)
+....|.+.|..|.+ ..++ .|+.+-+..++.. +|-.+..-.+=-+--.+....-|.|+-++|+.-+..+
T Consensus 5 ~~~~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~~ 80 (88)
T cd05027 5 KAMVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAMV 80 (88)
T ss_pred HHHHHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 356788899999963 3345 5999999999999 9977654444444446677888999999998766553
No 23
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=84.30 E-value=8.4 Score=28.31 Aligned_cols=68 Identities=13% Similarity=0.201 Sum_probs=50.4
Q ss_pred hHHHHHHHHHHhc-CCCCC-CCCHHHHHHHHHh-hCC----CCCcHHHHHHHHhhCcCccccccHHHHHHHhHHc
Q 027218 32 EMERIDNLFYSYA-NKSSG-MIDPEGIESLCSD-IEV----SHTDVRILMLAWKMKAEKQGYFTLEEWRRGLKAL 99 (226)
Q Consensus 32 ~~~~l~~lFd~Y~-d~~~~-~I~~dG~~~~~~D-Lgv----~~ed~~~LvLa~~l~a~~~g~~tr~eF~~g~~~l 99 (226)
....|.+.|..|- ...++ .|+.+-+.+++.. +|. .|....+=-+...+....-|.|+-++|+.-+..+
T Consensus 7 ~~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~ 81 (92)
T cd05025 7 AMETLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAAL 81 (92)
T ss_pred HHHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHH
Confidence 4567889999996 33346 5999999999975 653 4444445555556677889999999999877664
No 24
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=84.12 E-value=11 Score=31.62 Aligned_cols=85 Identities=15% Similarity=0.288 Sum_probs=67.0
Q ss_pred hhHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhhCCCCCcHHHHHHHHhhCcCccccccHHHHHHHhHHcc--CCcHHHHH
Q 027218 31 KEMERIDNLFYSYANKSSGMIDPEGIESLCSDIEVSHTDVRILMLAWKMKAEKQGYFTLEEWRRGLKALR--ADTVNKLK 108 (226)
Q Consensus 31 ~~~~~l~~lFd~Y~d~~~~~I~~dG~~~~~~DLgv~~ed~~~LvLa~~l~a~~~g~~tr~eF~~g~~~l~--~~sl~~lk 108 (226)
...+++.+.|..+-...++.|+-+-+...+.-||.+|.+..+.-|.--+.+ .-|.++-.+|+..|...- -++-++|+
T Consensus 17 ~qi~~lkeaF~l~D~d~~G~I~~~el~~ilr~lg~~~s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~~~~~~~~Eel~ 95 (160)
T COG5126 17 EQIQELKEAFQLFDRDSDGLIDRNELGKILRSLGFNPSEAEINKLFEEIDA-GNETVDFPEFLTVMSVKLKRGDKEEELR 95 (160)
T ss_pred HHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHcCCCCcHHHHHHHHHhccC-CCCccCHHHHHHHHHHHhccCCcHHHHH
Confidence 355666667777655556899999999999999999999999999999988 889999999999997754 34466676
Q ss_pred HHhHHHHH
Q 027218 109 KALPDLEK 116 (226)
Q Consensus 109 ~~l~~l~~ 116 (226)
....-.+.
T Consensus 96 ~aF~~fD~ 103 (160)
T COG5126 96 EAFKLFDK 103 (160)
T ss_pred HHHHHhCC
Confidence 66655443
No 25
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=84.10 E-value=1.9 Score=31.16 Aligned_cols=63 Identities=17% Similarity=0.348 Sum_probs=44.2
Q ss_pred HHHHHHHhcCCCCCCCCHHHHHHHHHhh----CCCCCcHHHHHHHHhh--CcCccccccHHHHHHHhHHc
Q 027218 36 IDNLFYSYANKSSGMIDPEGIESLCSDI----EVSHTDVRILMLAWKM--KAEKQGYFTLEEWRRGLKAL 99 (226)
Q Consensus 36 l~~lFd~Y~d~~~~~I~~dG~~~~~~DL----gv~~ed~~~LvLa~~l--~a~~~g~~tr~eF~~g~~~l 99 (226)
|..+|.+|.. +...|+.+++.+|+.+- .++++.+.-|+--+.- .....+.+|.++|+.-|..-
T Consensus 2 i~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~S~ 70 (83)
T PF09279_consen 2 IEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLFSD 70 (83)
T ss_dssp HHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHHST
T ss_pred HHHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHCCC
Confidence 6789999987 56799999999999633 3445555555444322 12346899999999887553
No 26
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=83.14 E-value=5.8 Score=33.26 Aligned_cols=67 Identities=15% Similarity=0.263 Sum_probs=50.7
Q ss_pred hHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhhCCCCCcHHHHHHHHhhCcCccccccHHHHHHHhHH
Q 027218 32 EMERIDNLFYSYANKSSGMIDPEGIESLCSDIEVSHTDVRILMLAWKMKAEKQGYFTLEEWRRGLKA 98 (226)
Q Consensus 32 ~~~~l~~lFd~Y~d~~~~~I~~dG~~~~~~DLgv~~ed~~~LvLa~~l~a~~~g~~tr~eF~~g~~~ 98 (226)
..++|...|.-|=...++.|+.+-+...++-||-...+-++=-|.-.+.--.-|.|+.++|++.+..
T Consensus 90 ~~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~lge~~~deev~~ll~~~d~d~dG~i~~~eF~~~~~~ 156 (160)
T COG5126 90 KEEELREAFKLFDKDHDGYISIGELRRVLKSLGERLSDEEVEKLLKEYDEDGDGEIDYEEFKKLIKD 156 (160)
T ss_pred cHHHHHHHHHHhCCCCCceecHHHHHHHHHhhcccCCHHHHHHHHHhcCCCCCceEeHHHHHHHHhc
Confidence 4667778888886666678888888888888888877766666666666666788888888887754
No 27
>TIGR01446 DnaD_dom DnaD and phage-associated domain. This model represents the conserved domain of DnaD, part of Bacillus subtilis replication restart primosome, and of a number of phage-associated proteins. Members, both chromosomal or phage-associated, are found in the Bacillus/Clostridium group of Gram-positive bacteria.
Probab=81.70 E-value=2.9 Score=29.49 Aligned_cols=56 Identities=13% Similarity=0.084 Sum_probs=37.0
Q ss_pred CCCHHHHHHHHHhhCCCCCcHHHHHHHHhh--CcCccccccHHHHHHHhHHccCCcHHHHH
Q 027218 50 MIDPEGIESLCSDIEVSHTDVRILMLAWKM--KAEKQGYFTLEEWRRGLKALRADTVNKLK 108 (226)
Q Consensus 50 ~I~~dG~~~~~~DLgv~~ed~~~LvLa~~l--~a~~~g~~tr~eF~~g~~~l~~~sl~~lk 108 (226)
....+-+..++++.|.+++ ++..++-+-+ +.++++.+ +.-+..|++-|+.|+++.+
T Consensus 15 ~~e~~~i~~~~~~~~~~~e-vI~~ai~~a~~~~~~~~~Yi--~~Il~~W~~~gi~T~e~~~ 72 (73)
T TIGR01446 15 PFEMEDLKYWLDEFGNSPE-LIKEALKEAVSNNKANYKYI--DAILNNWKNNGIKTVEDVE 72 (73)
T ss_pred HHHHHHHHHHHHHhCCCHH-HHHHHHHHHHHcCCCCHHHH--HHHHHHHHHcCCCCHHHHh
Confidence 3556677788888887744 5555554444 34444433 2566679999999999876
No 28
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=78.12 E-value=12 Score=30.02 Aligned_cols=71 Identities=21% Similarity=0.289 Sum_probs=57.0
Q ss_pred hhHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhhCCCCCcH----HHHHHHH-hhCcCccccccHHHHHHHhHHccC
Q 027218 31 KEMERIDNLFYSYANKSSGMIDPEGIESLCSDIEVSHTDV----RILMLAW-KMKAEKQGYFTLEEWRRGLKALRA 101 (226)
Q Consensus 31 ~~~~~l~~lFd~Y~d~~~~~I~~dG~~~~~~DLgv~~ed~----~~LvLa~-~l~a~~~g~~tr~eF~~g~~~l~~ 101 (226)
.+.+.+..+++++-...++.|+.+....++...+....+. ..|.=|+ .+-....|.||.+|+..-|..+|-
T Consensus 41 ~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~~~~~el~eaF~~fD~d~~G~Is~~el~~~l~~lg~ 116 (151)
T KOG0027|consen 41 PTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDEEASSEELKEAFRVFDKDGDGFISASELKKVLTSLGE 116 (151)
T ss_pred CCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhcccccccccHHHHHHHHHHHccCCCCcCcHHHHHHHHHHhCC
Confidence 4677888999999766668999999999999888876543 3555555 456777999999999999999884
No 29
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=76.05 E-value=12 Score=30.68 Aligned_cols=98 Identities=19% Similarity=0.343 Sum_probs=59.9
Q ss_pred HHHHHHHhcC---CCCCCCCHHHHHHHHHhhCCCC---CcHHHHHHHHhhCcCccccccHHHHHHHhHHc----cC--Cc
Q 027218 36 IDNLFYSYAN---KSSGMIDPEGIESLCSDIEVSH---TDVRILMLAWKMKAEKQGYFTLEEWRRGLKAL----RA--DT 103 (226)
Q Consensus 36 l~~lFd~Y~d---~~~~~I~~dG~~~~~~DLgv~~---ed~~~LvLa~~l~a~~~g~~tr~eF~~g~~~l----~~--~s 103 (226)
|+++|..|+. .....|+.....++|.|.||=. ....+=++-.+++++.-..|+-++|+..+..+ ++ .+
T Consensus 1 L~~~F~~f~~fG~~~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~~lA~~~~~~~~~ 80 (154)
T PF05517_consen 1 LEAVFKAFASFGKKNGTEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAKGARKITFEQFLEALAELAEKKGKDKSS 80 (154)
T ss_dssp HHHHHHHHHCSSTSTSSEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHHHHHHHHSCCCTH
T ss_pred CHHHHHHHHHhcCCccccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcCCCcccCHHHHHHHHHHHHHHhhccccc
Confidence 6789999953 2346799999999999999953 22333445556777777779999999998765 23 26
Q ss_pred HHHHHHHhH-------------HHHHHhCCcchhHHHHHhhhh
Q 027218 104 VNKLKKALP-------------DLEKEVKRPTNFQDFYAFAFR 133 (226)
Q Consensus 104 l~~lk~~l~-------------~l~~~l~~~~~Fk~~Y~ftF~ 133 (226)
.+++...|- ...+.|.|.+.|.-+|+--|+
T Consensus 81 ~~~~~~kl~~~~~P~~~g~~~~~~v~rltD~s~YTG~hk~rf~ 123 (154)
T PF05517_consen 81 AEELKEKLTAGGGPSASGATKAGAVDRLTDKSTYTGSHKERFD 123 (154)
T ss_dssp HHHHHHHHHTT--SSSSS-TTS------SSSS-STTS---SS-
T ss_pred HHHHHHHHHccCccccccccccccccccCCCCccchhhhhcCC
Confidence 777777661 112234566677777777776
No 30
>PLN02964 phosphatidylserine decarboxylase
Probab=72.81 E-value=21 Score=36.20 Aligned_cols=81 Identities=15% Similarity=0.146 Sum_probs=55.1
Q ss_pred hHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhhC-CCCCcHH---HHHHHHhhCcCccccccHHHHHHHhHHccC-CcHHH
Q 027218 32 EMERIDNLFYSYANKSSGMIDPEGIESLCSDIE-VSHTDVR---ILMLAWKMKAEKQGYFTLEEWRRGLKALRA-DTVNK 106 (226)
Q Consensus 32 ~~~~l~~lFd~Y~d~~~~~I~~dG~~~~~~DLg-v~~ed~~---~LvLa~~l~a~~~g~~tr~eF~~g~~~l~~-~sl~~ 106 (226)
+.+.+.+.|+.+-...++.| +...+..|| ++|+... +--+...+....-|.|+.+||+..|..++. .+-+.
T Consensus 141 qi~elkeaF~lfD~dgdG~i----Lg~ilrslG~~~pte~e~~fi~~mf~~~D~DgdG~IdfdEFl~lL~~lg~~~seEE 216 (644)
T PLN02964 141 EPESACESFDLLDPSSSNKV----VGSIFVSCSIEDPVETERSFARRILAIVDYDEDGQLSFSEFSDLIKAFGNLVAANK 216 (644)
T ss_pred HHHHHHHHHHHHCCCCCCcC----HHHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHhccCCCHHH
Confidence 55677778887754434455 667788999 5887665 233333456666899999999999988774 45555
Q ss_pred HHHHhHHHHH
Q 027218 107 LKKALPDLEK 116 (226)
Q Consensus 107 lk~~l~~l~~ 116 (226)
++..+..++.
T Consensus 217 L~eaFk~fDk 226 (644)
T PLN02964 217 KEELFKAADL 226 (644)
T ss_pred HHHHHHHhCC
Confidence 6666655543
No 31
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=71.73 E-value=8.5 Score=29.82 Aligned_cols=67 Identities=13% Similarity=0.254 Sum_probs=51.4
Q ss_pred hhhHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhhCCCCCcHHHHHHHHhhCcCccccccHHHHHHHhHHc
Q 027218 30 SKEMERIDNLFYSYANKSSGMIDPEGIESLCSDIEVSHTDVRILMLAWKMKAEKQGYFTLEEWRRGLKAL 99 (226)
Q Consensus 30 ~~~~~~l~~lFd~Y~d~~~~~I~~dG~~~~~~DLgv~~ed~~~LvLa~~l~a~~~g~~tr~eF~~g~~~l 99 (226)
+.+.++..++|++.. +.++.|+.+....++..-|++.+.+.-+. .+.-..+-|..+++||+-+|+=.
T Consensus 6 ~~e~~~y~~~F~~l~-~~~g~isg~~a~~~f~~S~L~~~~L~~IW--~LaD~~~dG~L~~~EF~iAm~Li 72 (104)
T PF12763_consen 6 PEEKQKYDQIFQSLD-PQDGKISGDQAREFFMKSGLPRDVLAQIW--NLADIDNDGKLDFEEFAIAMHLI 72 (104)
T ss_dssp CCHHHHHHHHHHCTS-SSTTEEEHHHHHHHHHHTTSSHHHHHHHH--HHH-SSSSSEEEHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC-CCCCeEeHHHHHHHHHHcCCCHHHHHHHH--hhhcCCCCCcCCHHHHHHHHHHH
Confidence 347788889999875 45678999999999999999876444332 23356678999999999999764
No 32
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=71.45 E-value=5.3 Score=23.54 Aligned_cols=30 Identities=20% Similarity=0.459 Sum_probs=20.0
Q ss_pred HHHHHHHHhcCCCCCCCCHHHHHHHHH-hhC
Q 027218 35 RIDNLFYSYANKSSGMIDPEGIESLCS-DIE 64 (226)
Q Consensus 35 ~l~~lFd~Y~d~~~~~I~~dG~~~~~~-DLg 64 (226)
+|.++|+.|=.+.++.|+.+-+.+.+. .||
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~~~lG 31 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILRKSLG 31 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHHHHTT
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHHHhcC
Confidence 356777777444456777777777777 565
No 33
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=71.34 E-value=35 Score=33.06 Aligned_cols=90 Identities=22% Similarity=0.254 Sum_probs=73.1
Q ss_pred hhHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhhCCC-CCcHHHHHHHHhhCcCccccccHHHHHHHhHHc----------
Q 027218 31 KEMERIDNLFYSYANKSSGMIDPEGIESLCSDIEVS-HTDVRILMLAWKMKAEKQGYFTLEEWRRGLKAL---------- 99 (226)
Q Consensus 31 ~~~~~l~~lFd~Y~d~~~~~I~~dG~~~~~~DLgv~-~ed~~~LvLa~~l~a~~~g~~tr~eF~~g~~~l---------- 99 (226)
....++..+|+.+-...++.++++.+.+-++.|++. |..-..=.|.-.|.+.+-|...-++|.+-+.+-
T Consensus 11 er~~r~~~lf~~lD~~~~g~~d~~~l~k~~~~l~~~~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~~~E~~l~~~F~~ 90 (463)
T KOG0036|consen 11 ERDIRIRCLFKELDSKNDGQVDLDQLEKGLEKLDHPKPNYEAAKMLFSAMDANRDGRVDYSEFKRYLDNKELELYRIFQS 90 (463)
T ss_pred HHHHHHHHHHHHhccCCCCceeHHHHHHHHHhcCCCCCchHHHHHHHHhcccCcCCcccHHHHHHHHHHhHHHHHHHHhh
Confidence 355678899999977667899999999999999999 887788888899999999999999999987542
Q ss_pred ------cCCcHHHHHHHhHHHHHHhCC
Q 027218 100 ------RADTVNKLKKALPDLEKEVKR 120 (226)
Q Consensus 100 ------~~~sl~~lk~~l~~l~~~l~~ 120 (226)
|+-.+..|..+|.++-.+|.+
T Consensus 91 iD~~hdG~i~~~Ei~~~l~~~gi~l~d 117 (463)
T KOG0036|consen 91 IDLEHDGKIDPNEIWRYLKDLGIQLSD 117 (463)
T ss_pred hccccCCccCHHHHHHHHHHhCCccCH
Confidence 344567777777777666643
No 34
>PF14658 EF-hand_9: EF-hand domain
Probab=70.51 E-value=13 Score=26.71 Aligned_cols=51 Identities=10% Similarity=0.183 Sum_probs=45.8
Q ss_pred CCCCCHHHHHHHHHhhCC-CCCcHHHHHHHHhhCcCcc-ccccHHHHHHHhHH
Q 027218 48 SGMIDPEGIESLCSDIEV-SHTDVRILMLAWKMKAEKQ-GYFTLEEWRRGLKA 98 (226)
Q Consensus 48 ~~~I~~dG~~~~~~DLgv-~~ed~~~LvLa~~l~a~~~-g~~tr~eF~~g~~~ 98 (226)
.+.|-+.-+..|+..+|- +|++-.+=-|+-.+--..- |.+.++.|+.-|+.
T Consensus 12 tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 12 TGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred CceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence 378999999999999999 9999999999999977776 99999999998875
No 35
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=70.50 E-value=8.7 Score=25.06 Aligned_cols=46 Identities=22% Similarity=0.450 Sum_probs=27.4
Q ss_pred cccccHHHHHHHhHHccCC--cHHHHHHHhHHHHHHhCCcchhHHHHH
Q 027218 84 QGYFTLEEWRRGLKALRAD--TVNKLKKALPDLEKEVKRPTNFQDFYA 129 (226)
Q Consensus 84 ~g~~tr~eF~~g~~~l~~~--sl~~lk~~l~~l~~~l~~~~~Fk~~Y~ 129 (226)
-|.||+++|...+..+|.. |.+.+...+...+..=...-.|.+|..
T Consensus 2 ~G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~ 49 (54)
T PF13833_consen 2 DGKITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFIS 49 (54)
T ss_dssp SSEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHH
T ss_pred cCEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHH
Confidence 4899999999999887765 444444444444332222223444443
No 36
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=67.73 E-value=3.9 Score=24.34 Aligned_cols=19 Identities=26% Similarity=0.520 Sum_probs=13.0
Q ss_pred cCccccccHHHHHHHhHHc
Q 027218 81 AEKQGYFTLEEWRRGLKAL 99 (226)
Q Consensus 81 a~~~g~~tr~eF~~g~~~l 99 (226)
.-.-|.|+.+||+..|++|
T Consensus 11 ~d~dG~I~~~Ef~~~~~~L 29 (29)
T PF00036_consen 11 KDGDGKIDFEEFKEMMKKL 29 (29)
T ss_dssp TTSSSEEEHHHHHHHHHHT
T ss_pred CCCCCcCCHHHHHHHHHhC
Confidence 3445778888888777654
No 37
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=67.23 E-value=78 Score=26.89 Aligned_cols=83 Identities=24% Similarity=0.340 Sum_probs=63.6
Q ss_pred hHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhhCCCCCcHHHHHHHHhhCcCccccccHHHHHHHhHHc--cCCcHHHHHH
Q 027218 32 EMERIDNLFYSYANKSSGMIDPEGIESLCSDIEVSHTDVRILMLAWKMKAEKQGYFTLEEWRRGLKAL--RADTVNKLKK 109 (226)
Q Consensus 32 ~~~~l~~lFd~Y~d~~~~~I~~dG~~~~~~DLgv~~ed~~~LvLa~~l~a~~~g~~tr~eF~~g~~~l--~~~sl~~lk~ 109 (226)
...++..-|+-+-....+.|+.+++--=.-.||.+|..-.++-|.--+.....|.|+-++|+.-|... .-+|.+.++.
T Consensus 31 q~q~i~e~f~lfd~~~~g~iD~~EL~vAmralGFE~~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~k~~e~dt~eEi~~ 110 (172)
T KOG0028|consen 31 QKQEIKEAFELFDPDMAGKIDVEELKVAMRALGFEPKKEEILKLLADVDKEGSGKITFEDFRRVMTVKLGERDTKEEIKK 110 (172)
T ss_pred HHhhHHHHHHhhccCCCCcccHHHHHHHHHHcCCCcchHHHHHHHHhhhhccCceechHHHHHHHHHHHhccCcHHHHHH
Confidence 44566666666654445899999995555689999999999888877777889999999999988652 2468888877
Q ss_pred HhHHH
Q 027218 110 ALPDL 114 (226)
Q Consensus 110 ~l~~l 114 (226)
.+...
T Consensus 111 afrl~ 115 (172)
T KOG0028|consen 111 AFRLF 115 (172)
T ss_pred HHHcc
Confidence 66533
No 38
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=62.30 E-value=57 Score=25.64 Aligned_cols=62 Identities=13% Similarity=0.231 Sum_probs=46.8
Q ss_pred hhHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhhCCCCCcHHHHHHHHhhCcCccccccHHHHHHHh
Q 027218 31 KEMERIDNLFYSYANKSSGMIDPEGIESLCSDIEVSHTDVRILMLAWKMKAEKQGYFTLEEWRRGL 96 (226)
Q Consensus 31 ~~~~~l~~lFd~Y~d~~~~~I~~dG~~~~~~DLgv~~ed~~~LvLa~~l~a~~~g~~tr~eF~~g~ 96 (226)
....+|.-.|.++=...++.|+.+=+..++ +.+...-+--+...+.+..=|.||.+||..++
T Consensus 45 ~~~~~l~w~F~~lD~d~DG~Ls~~EL~~~~----l~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl 106 (116)
T cd00252 45 MCKDPVGWMFNQLDGNYDGKLSHHELAPIR----LDPNEHCIKPFFESCDLDKDGSISLDEWCYCF 106 (116)
T ss_pred HHHHHHHHHHHHHCCCCCCcCCHHHHHHHH----ccchHHHHHHHHHHHCCCCCCCCCHHHHHHHH
Confidence 356778899999944445789999998877 44444444456666678889999999999987
No 39
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=61.60 E-value=27 Score=34.01 Aligned_cols=93 Identities=13% Similarity=0.189 Sum_probs=68.8
Q ss_pred CCCCHHHHHHHHHhhCCCCCcHHHHHHHHhhCcCccccccHHHHHHHhHHccCCcHHHHHHHhHHHHHHhCC------cc
Q 027218 49 GMIDPEGIESLCSDIEVSHTDVRILMLAWKMKAEKQGYFTLEEWRRGLKALRADTVNKLKKALPDLEKEVKR------PT 122 (226)
Q Consensus 49 ~~I~~dG~~~~~~DLgv~~ed~~~LvLa~~l~a~~~g~~tr~eF~~g~~~l~~~sl~~lk~~l~~l~~~l~~------~~ 122 (226)
....+|-..+|.++|..+.-.++..-.+. ..-|.||..+|-.-+-.+-..+.++....+.++.++..+ -+
T Consensus 301 ~kLs~deF~~F~e~Lq~Eil~lEF~~~~~----~~~g~Ise~DFA~~lL~~a~~n~~~k~~~lkrvk~kf~~~~~gISl~ 376 (489)
T KOG2643|consen 301 GKLSIDEFLKFQENLQEEILELEFERFDK----GDSGAISEVDFAELLLAYAGVNSKKKHKYLKRVKEKFKDDGKGISLQ 376 (489)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHhCc----ccccccCHHHHHHHHHHHcccchHhHHHHHHHHHHhccCCCCCcCHH
Confidence 57899999999999987655454443332 223899999999999888777778888888888888854 25
Q ss_pred hhHHHHHhhhhhccCccccccccHHhHHHHHh
Q 027218 123 NFQDFYAFAFRYCLTEEKQKSVDIESVCELLG 154 (226)
Q Consensus 123 ~Fk~~Y~ftF~~~~~~~~qk~L~~d~Ai~~W~ 154 (226)
.|+.|.+|..+.+ +.++|+.+-.
T Consensus 377 Ef~~Ff~Fl~~l~---------dfd~Al~fy~ 399 (489)
T KOG2643|consen 377 EFKAFFRFLNNLN---------DFDIALRFYH 399 (489)
T ss_pred HHHHHHHHHhhhh---------HHHHHHHHHH
Confidence 7999998887653 3566665543
No 40
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=59.65 E-value=41 Score=27.99 Aligned_cols=67 Identities=15% Similarity=0.240 Sum_probs=50.3
Q ss_pred hHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhhCCCCCcHHHHHHHHhhCcC--ccccccHHHHHHHhHH
Q 027218 32 EMERIDNLFYSYANKSSGMIDPEGIESLCSDIEVSHTDVRILMLAWKMKAE--KQGYFTLEEWRRGLKA 98 (226)
Q Consensus 32 ~~~~l~~lFd~Y~d~~~~~I~~dG~~~~~~DLgv~~ed~~~LvLa~~l~a~--~~g~~tr~eF~~g~~~ 98 (226)
....+.++|+-|-...++.|+...+.--+..||.+|.+..++-..-...+. ++-.++-++|+--.+.
T Consensus 9 ~~~e~ke~F~lfD~~gD~ki~~~q~gdvlRalG~nPT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~ 77 (152)
T KOG0030|consen 9 QMEEFKEAFLLFDRTGDGKISGSQVGDVLRALGQNPTNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQ 77 (152)
T ss_pred hHHHHHHHHHHHhccCcccccHHHHHHHHHHhcCCCcHHHHHHHHcCcccchhhhhhhhHHHHHHHHHH
Confidence 456777777777554557899999999999999999998888777666666 3456777777755444
No 41
>PRK10391 oriC-binding nucleoid-associated protein; Provisional
Probab=58.94 E-value=19 Score=26.31 Aligned_cols=40 Identities=13% Similarity=0.353 Sum_probs=31.7
Q ss_pred cHHHHHHHhHHccCCcHHHHHHHhHHHHHHhCCcchhHHHHH
Q 027218 88 TLEEWRRGLKALRADTVNKLKKALPDLEKEVKRPTNFQDFYA 129 (226)
Q Consensus 88 tr~eF~~g~~~l~~~sl~~lk~~l~~l~~~l~~~~~Fk~~Y~ 129 (226)
|+.+|+-.++ +|+|++.|-+.+..++..|.++..-..||+
T Consensus 2 tk~eyLlkfR--kcss~eTLEkv~e~~~y~L~~~~e~~~f~~ 41 (71)
T PRK10391 2 TVQDYLLKFR--KISSLESLEKLFDHLNYTLTDDQEIINMYR 41 (71)
T ss_pred cHHHHHHHHH--hcCcHHHHHHHHHHhhcccCCHHHHHHHHH
Confidence 6778886554 499999999999999999987655555554
No 42
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=58.56 E-value=54 Score=27.87 Aligned_cols=60 Identities=17% Similarity=0.308 Sum_probs=33.4
Q ss_pred HHHHhcCCCCCCCCHHHHHHHHHhhCCCCCcHHHHHHHHhhCcCccccccHHHHHHHhHH
Q 027218 39 LFYSYANKSSGMIDPEGIESLCSDIEVSHTDVRILMLAWKMKAEKQGYFTLEEWRRGLKA 98 (226)
Q Consensus 39 lFd~Y~d~~~~~I~~dG~~~~~~DLgv~~ed~~~LvLa~~l~a~~~g~~tr~eF~~g~~~ 98 (226)
.|.-.-+...+.|++.-+-+....||=++.|-.+--.-.-..--.-|+|+.+||+..|+.
T Consensus 111 afrl~D~D~~Gkis~~~lkrvakeLgenltD~El~eMIeEAd~d~dgevneeEF~~imk~ 170 (172)
T KOG0028|consen 111 AFRLFDDDKTGKISQRNLKRVAKELGENLTDEELMEMIEEADRDGDGEVNEEEFIRIMKK 170 (172)
T ss_pred HHHcccccCCCCcCHHHHHHHHHHhCccccHHHHHHHHHHhcccccccccHHHHHHHHhc
Confidence 333333333456666666666666666666655544444444444566666666666553
No 43
>PF07531 TAFH: NHR1 homology to TAF; InterPro: IPR003894 The TAF homology (TAFH) or Nervy homology region 1 (NHR1) domain is a domain of 95-100 amino acids present in eukaryotic proteins of the MTG/ETO family and whereof the core ~75-80 residues occur in TAF proteins. The transcription initiation TFIID complex is composed of TATA binding protein (TBP) and a number of TBP-associated factors (TAFs). The TAFH/NHR1 domain is named after fruit fly TATA-box-associated factor 110 (TAF110), human TAF105 and TAF130, and the fruit fly protein Nervy, which is a homologue of human MTG8/ETO [, ]. The human eight twenty-one (ETO or MTG8) and related myeloid transforming gene products MTGR1 and MTG16 as well as the Nervy protein contain the NHR1-4 domains. The NHR1/TAFH domain occurs in the N-terminal part of these proteins, while a MYND-type zinc finger forms the NHR4 domain []. The TAFH/NHR1 domain can be involved in protein-protein interactions, e.g in MTG8/ETO with HSP90 and Gfi-1 []. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2P6V_A 2KNH_A 2PP4_A 2H7B_A.
Probab=56.98 E-value=28 Score=26.88 Aligned_cols=64 Identities=31% Similarity=0.354 Sum_probs=44.9
Q ss_pred HHHHHHHhhCCCC---CcHHHHHHHHhhCcCccccccHHHHHHHhHHc-c----CCcHHHHHHHhHHHHHHhCCcchh
Q 027218 55 GIESLCSDIEVSH---TDVRILMLAWKMKAEKQGYFTLEEWRRGLKAL-R----ADTVNKLKKALPDLEKEVKRPTNF 124 (226)
Q Consensus 55 G~~~~~~DLgv~~---ed~~~LvLa~~l~a~~~g~~tr~eF~~g~~~l-~----~~sl~~lk~~l~~l~~~l~~~~~F 124 (226)
-+++|..+ .++| +.+..||.+-.- |.|+-|||...++.. + -.=+.=||+.||.|++++.+.+.|
T Consensus 12 tLi~las~-~~spev~~~Vr~LV~~L~~-----~~i~~EeF~~~Lq~~lns~pqP~lvPFLK~~lp~Lr~~l~~~~~~ 83 (96)
T PF07531_consen 12 TLIQLASD-KQSPEVGENVRELVQNLVD-----GKIEAEEFTSKLQEELNSSPQPYLVPFLKKSLPALRQELPNCARF 83 (96)
T ss_dssp HHHHHHCC-SC-CCHHHHHHHHHHHHHT-----TSS-HHHHHHHHHHHCTSS--TTHHHHHHHHHHHHHHCHCHHHHH
T ss_pred HHHHHhcC-CCChHHHHHHHHHHHHHHc-----CCCCHHHHHHHHHHHhcCCCCcchHHHHHHhHHHHHHHHHHHHHH
Confidence 46778888 5555 446677766554 579999999999773 3 234678999999999999765444
No 44
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=54.54 E-value=96 Score=26.50 Aligned_cols=135 Identities=16% Similarity=0.230 Sum_probs=84.0
Q ss_pred HHHHHHHHHHhc---CC-CCCCCCHHHHHHHHHhhCCCCCcHHHHHHHHhhCcCccccccHHHHHHHhHHccCCcHHHHH
Q 027218 33 MERIDNLFYSYA---NK-SSGMIDPEGIESLCSDIEVSHTDVRILMLAWKMKAEKQGYFTLEEWRRGLKALRADTVNKLK 108 (226)
Q Consensus 33 ~~~l~~lFd~Y~---d~-~~~~I~~dG~~~~~~DLgv~~ed~~~LvLa~~l~a~~~g~~tr~eF~~g~~~l~~~sl~~lk 108 (226)
.+.|..|+.+|+ -+ ..+.|..+-+..+. .+..+|=...++-+....+.... ++.++|++++....+......|
T Consensus 29 ~~EI~~L~~rF~kl~~~~~~g~lt~eef~~i~-~~~~Np~~~rI~~~f~~~~~~~~--v~F~~Fv~~ls~f~~~~~~~~K 105 (187)
T KOG0034|consen 29 ANEIERLYERFKKLDRNNGDGYLTKEEFLSIP-ELALNPLADRIIDRFDTDGNGDP--VDFEEFVRLLSVFSPKASKREK 105 (187)
T ss_pred HHHHHHHHHHHHHhccccccCccCHHHHHHHH-HHhcCcHHHHHHHHHhccCCCCc--cCHHHHHHHHhhhcCCccHHHH
Confidence 445555555554 44 45789999998777 89999988888888887777666 9999999999988776655532
Q ss_pred HHhHHHHHHhCCcchhHHHHHhhhhhccCccccccccHHhHHHHHhhhhCCCCh---hhHHHHHHHHHhc---CCCCcCC
Q 027218 109 KALPDLEKEVKRPTNFQDFYAFAFRYCLTEEKQKSVDIESVCELLGLVLGSQYR---AQVDYLIEYLKIQ---SDYKVIN 182 (226)
Q Consensus 109 ~~l~~l~~~l~~~~~Fk~~Y~ftF~~~~~~~~qk~L~~d~Ai~~W~llf~~~~~---~~l~~W~~Fl~~~---~~~k~Is 182 (226)
-. |+|..=- -.+...|..+.-...-..+++..-. ..+..=++++-.+ ..-..||
T Consensus 106 l~-------------------faF~vYD-~~~~G~I~reel~~iv~~~~~~~~~~~~e~~~~i~d~t~~e~D~d~DG~Is 165 (187)
T KOG0034|consen 106 LR-------------------FAFRVYD-LDGDGFISREELKQILRMMVGENDDMSDEQLEDIVDKTFEEADTDGDGKIS 165 (187)
T ss_pred HH-------------------HHHHHhc-CCCCCcCcHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHhCCCCCCcCc
Confidence 22 2333221 1233446666666666666664321 2344444444221 1223577
Q ss_pred hhhHHHHH
Q 027218 183 MDQWMGFY 190 (226)
Q Consensus 183 kD~W~~~l 190 (226)
.+-|+-++
T Consensus 166 feEf~~~v 173 (187)
T KOG0034|consen 166 FEEFCKVV 173 (187)
T ss_pred HHHHHHHH
Confidence 77777555
No 45
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=47.65 E-value=1.5e+02 Score=23.99 Aligned_cols=92 Identities=18% Similarity=0.225 Sum_probs=48.1
Q ss_pred HHHHHhcCCCCCCCCHHHHHHHHHhhCCCCCcHH--HHHHHHhhCcC----------------------ccccccHHHHH
Q 027218 38 NLFYSYANKSSGMIDPEGIESLCSDIEVSHTDVR--ILMLAWKMKAE----------------------KQGYFTLEEWR 93 (226)
Q Consensus 38 ~lFd~Y~d~~~~~I~~dG~~~~~~DLgv~~ed~~--~LvLa~~l~a~----------------------~~g~~tr~eF~ 93 (226)
++-++--++.-...+.++++.+|+-++-+++.+. +-.|..+++.+ =--+|...+|+
T Consensus 4 ~~iekAT~~~l~~~dw~~ileicD~In~~~~~~k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl 83 (139)
T cd03567 4 AWLNKATNPSNREEDWEAIQAFCEQINKEPEGPQLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFL 83 (139)
T ss_pred HHHHHHcCccCCCCCHHHHHHHHHHHHcCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHH
Confidence 3334433333345666677777776666665432 22233333222 23678889999
Q ss_pred HHhHHccC------CcHHHHHHHhH----HHHHHhCCcchhHHHHH
Q 027218 94 RGLKALRA------DTVNKLKKALP----DLEKEVKRPTNFQDFYA 129 (226)
Q Consensus 94 ~g~~~l~~------~sl~~lk~~l~----~l~~~l~~~~~Fk~~Y~ 129 (226)
+.+.++-- .+-...|.++- .|...+.+...|++.|+
T Consensus 84 ~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~~p~~~~~Y~ 129 (139)
T cd03567 84 NELIKLVSPKYLGSRTSEKVKTKIIELLYSWTLELPHEPKIKEAYD 129 (139)
T ss_pred HHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHhcccchHHHHHH
Confidence 88877532 24445555444 44445544334555554
No 46
>PF13443 HTH_26: Cro/C1-type HTH DNA-binding domain; PDB: 3TYR_A 3TYS_A 3B7H_A.
Probab=45.87 E-value=13 Score=25.00 Aligned_cols=22 Identities=9% Similarity=0.217 Sum_probs=14.8
Q ss_pred CCCCHHHHHHHHHhhCCCCCcH
Q 027218 49 GMIDPEGIESLCSDIEVSHTDV 70 (226)
Q Consensus 49 ~~I~~dG~~~~~~DLgv~~ed~ 70 (226)
..+..+-+.++|+-||++|+++
T Consensus 36 ~~~~~~~l~~ia~~l~~~~~el 57 (63)
T PF13443_consen 36 SNPSLDTLEKIAKALNCSPEEL 57 (63)
T ss_dssp ----HHHHHHHHHHHT--HHHC
T ss_pred ccccHHHHHHHHHHcCCCHHHH
Confidence 5799999999999999999875
No 47
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=45.83 E-value=83 Score=26.85 Aligned_cols=60 Identities=10% Similarity=0.204 Sum_probs=43.4
Q ss_pred hHHHHHHHHHHhcCCCCCCCCHHHHHHHHHh--hCCCC----CcHHHHHHHHhhCcCccccccHHH
Q 027218 32 EMERIDNLFYSYANKSSGMIDPEGIESLCSD--IEVSH----TDVRILMLAWKMKAEKQGYFTLEE 91 (226)
Q Consensus 32 ~~~~l~~lFd~Y~d~~~~~I~~dG~~~~~~D--Lgv~~----ed~~~LvLa~~l~a~~~g~~tr~e 91 (226)
.+++.+++|.+|+...++.+...-+.++... .=.|| ....-..++|.|..+.-|..+||.
T Consensus 94 vp~kFe~iF~kya~~~~d~LT~~E~~~m~~~nr~~~D~~GW~a~~~EW~~~y~L~~d~dG~l~Ke~ 159 (174)
T PF05042_consen 94 VPQKFEEIFSKYAKTGPDALTLRELWRMLKGNRNANDPFGWFAAFFEWGALYILAKDKDGFLSKED 159 (174)
T ss_pred CHHHHHHHHHHhCCCCCCCcCHHHHHHHHHhccccCCcchhhhhhhHHHHHHHHHcCcCCcEeHHH
Confidence 5689999999999766688999888888875 22333 223445667777777788887665
No 48
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=45.68 E-value=50 Score=21.75 Aligned_cols=32 Identities=16% Similarity=0.119 Sum_probs=22.5
Q ss_pred hCcCccccccHHHHHHHhHHccCCcHHHHHHHh
Q 027218 79 MKAEKQGYFTLEEWRRGLKALRADTVNKLKKAL 111 (226)
Q Consensus 79 l~a~~~g~~tr~eF~~g~~~l~~~sl~~lk~~l 111 (226)
+....-|.|+.+|+...+..+|. +-+.++..+
T Consensus 8 ~D~~~~G~i~~~el~~~l~~~g~-~~~~~~~i~ 39 (67)
T cd00052 8 LDPDGDGLISGDEARPFLGKSGL-PRSVLAQIW 39 (67)
T ss_pred hCCCCCCcCcHHHHHHHHHHcCC-CHHHHHHHH
Confidence 34455799999999999988886 444444443
No 49
>PRK10945 gene expression modulator; Provisional
Probab=45.57 E-value=31 Score=25.27 Aligned_cols=40 Identities=18% Similarity=0.396 Sum_probs=31.1
Q ss_pred ccHHHHHHHhHHccCCcHHHHHHHhHHHHHHhCCcchhHHHHH
Q 027218 87 FTLEEWRRGLKALRADTVNKLKKALPDLEKEVKRPTNFQDFYA 129 (226)
Q Consensus 87 ~tr~eF~~g~~~l~~~sl~~lk~~l~~l~~~l~~~~~Fk~~Y~ 129 (226)
.|+.+|+-.++. |.|.+.|-+.+..++..|.+ ..+..||.
T Consensus 6 Mtk~dyL~~fRr--css~eTLEkvie~~~~~L~~-~E~~~f~~ 45 (72)
T PRK10945 6 LTKTDYLMRLRR--CQTIDTLERVIEKNKYELSD-DELAVFYS 45 (72)
T ss_pred ccHHHHHHHHHh--cCcHHHHHHHHHHhhccCCH-HHHHHHHH
Confidence 389999976654 99999999999999999976 34444444
No 50
>PF12238 MSA-2c: Merozoite surface antigen 2c; InterPro: IPR021060 This family of proteins are restricted to the apicomplexan Babesia bovis. Proteins in this entry are typically between 263 and 318 amino acids in length and plasma membrane glycoproteins. These antigens present on the merozoite surface (MSA) and are involved in the parasite invasion of the bovine erythrocyte. MSA-2c has been suggested as a possible antigen for a vaccine candidate [].
Probab=44.94 E-value=38 Score=29.58 Aligned_cols=52 Identities=15% Similarity=0.284 Sum_probs=36.9
Q ss_pred hhHHHhhC-CCCCChhhHHHHHHHHHHhcCCCCCCC-CHHHHHHHHHhhCCCCC
Q 027218 17 ATDLFRSA-SSKASSKEMERIDNLFYSYANKSSGMI-DPEGIESLCSDIEVSHT 68 (226)
Q Consensus 17 A~d~~~~~-~~~~~~~~~~~l~~lFd~Y~d~~~~~I-~~dG~~~~~~DLgv~~e 68 (226)
++|.|.+. ++.-....+.++.+.|.+-.-.++..+ +.+|+.+||++-=-+-.
T Consensus 66 ~~n~fl~~~~~~~~~~~~~~~~~YyKkhIy~~d~~v~d~~~lv~~ck~Fl~~~s 119 (205)
T PF12238_consen 66 HMNAFLNDWPPHMLEEGREKMTKYYKKHIYKEDSEVKDYNGLVKFCKDFLDSES 119 (205)
T ss_pred HHHHHHccCchhhhhccHHHHHHHHHHhccCcccccccHHHHHHHHHHHhcccc
Confidence 78888873 333333477888899988765555667 99999999998743333
No 51
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=42.75 E-value=52 Score=24.18 Aligned_cols=71 Identities=11% Similarity=-0.009 Sum_probs=39.8
Q ss_pred CCCCCcHHHHHHHHhh-CcCccccccHHHHHHHhHHccCCcHHHHHHHhHHHHHHhCCcchhHHHHHhhhhhc
Q 027218 64 EVSHTDVRILMLAWKM-KAEKQGYFTLEEWRRGLKALRADTVNKLKKALPDLEKEVKRPTNFQDFYAFAFRYC 135 (226)
Q Consensus 64 gv~~ed~~~LvLa~~l-~a~~~g~~tr~eF~~g~~~l~~~sl~~lk~~l~~l~~~l~~~~~Fk~~Y~ftF~~~ 135 (226)
+++++++..+--+... -...-|.|+.+++...|+.+|++ -+.++..+...+..-...-.|.+|+...-..+
T Consensus 3 ~ls~~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~~~-~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~~~ 74 (96)
T smart00027 3 AISPEDKAKYEQIFRSLDKNQDGTVTGAQAKPILLKSGLP-QTLLAKIWNLADIDNDGELDKDEFALAMHLIY 74 (96)
T ss_pred CCCHHHHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHcCCC-HHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHH
Confidence 3455556656555544 44568999999999999998863 34444444332221111223555554443333
No 52
>PF01314 AFOR_C: Aldehyde ferredoxin oxidoreductase, domains 2 & 3; InterPro: IPR001203 Enzymes of the aldehyde ferredoxin oxidoreductase (AOR) family [] contain a tungsten cofactor and an 4Fe4S cluster and catalyse the interconversion of aldehydes to carboxylates []. This family includes AOR, formaldehyde ferredoxin oxidoreductase (FOR), glyceraldehyde-3-phosphate ferredoxin oxidoreductase (GAPOR), all isolated from hyperthermophilic archea []; carboxylic acid reductase found in clostridia []; and hydroxycarboxylate viologen oxidoreductase from Proteus vulgaris, the sole member of the AOR family containing molybdenum []. GAPOR may be involved in glycolysis [], but the functions of the other proteins are not yet clear. AOR has been proposed to be the primary enzyme responsible for oxidising the aldehydes that are produced by the 2-keto acid oxidoreductases []. This entry represents the C-terminal region of these enzymes, containing the alpha-helical structural domains 2 and 3 [, ].; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0016625 oxidoreductase activity, acting on the aldehyde or oxo group of donors, iron-sulfur protein as acceptor, 0051536 iron-sulfur cluster binding, 0055114 oxidation-reduction process; PDB: 1B25_C 1B4N_C 1AOR_B.
Probab=41.88 E-value=13 Score=35.05 Aligned_cols=36 Identities=25% Similarity=0.478 Sum_probs=29.6
Q ss_pred HHHHHHhhCCCCCcHHHHHHHHhhCcCccccccHHHH
Q 027218 56 IESLCSDIEVSHTDVRILMLAWKMKAEKQGYFTLEEW 92 (226)
Q Consensus 56 ~~~~~~DLgv~~ed~~~LvLa~~l~a~~~g~~tr~eF 92 (226)
+..+|++||+|.-+.-. +|||.|.+-.-|.|++++.
T Consensus 116 ~~~lcd~~GlDtis~G~-~ia~~me~~e~G~i~~~d~ 151 (382)
T PF01314_consen 116 ANDLCDDYGLDTISAGN-TIAWAMELYEKGLITKEDT 151 (382)
T ss_dssp HHHHHHHHTB-HHHHHH-HHHHHHHHHHTTSSSCHHH
T ss_pred HHHHHHHhCCcHHHHHH-HHHHHHHHHHCCCCChhhc
Confidence 34689999999866654 8999999999999999887
No 53
>TIGR01565 homeo_ZF_HD homeobox domain, ZF-HD class. This model represents a class of homoebox domain that differs substantially from the typical homoebox domain described in pfam model pfam00046. It is found in both C4 and C3 plants.
Probab=40.78 E-value=66 Score=22.40 Aligned_cols=40 Identities=15% Similarity=0.251 Sum_probs=26.7
Q ss_pred hhhHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhhCCCCCcH
Q 027218 30 SKEMERIDNLFYSYANKSSGMIDPEGIESLCSDIEVSHTDV 70 (226)
Q Consensus 30 ~~~~~~l~~lFd~Y~d~~~~~I~~dG~~~~~~DLgv~~ed~ 70 (226)
+....+|++.|++-.=- -..++..-..+||.+|||+..-+
T Consensus 10 ~~Q~~~Le~~fe~~~y~-~~~~~~~~r~~la~~lgl~~~vv 49 (58)
T TIGR01565 10 AEQKEKMRDFAEKLGWK-LKDKRREEVREFCEEIGVTRKVF 49 (58)
T ss_pred HHHHHHHHHHHHHcCCC-CCCCCHHHHHHHHHHhCCCHHHe
Confidence 34566777777764310 01266778999999999986533
No 54
>PLN02964 phosphatidylserine decarboxylase
Probab=39.94 E-value=1.4e+02 Score=30.41 Aligned_cols=64 Identities=11% Similarity=0.015 Sum_probs=49.4
Q ss_pred HHHHHHHHhcCCCCCCCCHHHHHHHHHhhCCCCCcHHHHHHHHhhCcCccccccHHHHHHHhHH
Q 027218 35 RIDNLFYSYANKSSGMIDPEGIESLCSDIEVSHTDVRILMLAWKMKAEKQGYFTLEEWRRGLKA 98 (226)
Q Consensus 35 ~l~~lFd~Y~d~~~~~I~~dG~~~~~~DLgv~~ed~~~LvLa~~l~a~~~g~~tr~eF~~g~~~ 98 (226)
-+.++|..+-.+.++.|+.+-.+.++..+|-...+-.+.-+--.+.-..-|.||.+|+.+.|..
T Consensus 180 fi~~mf~~~D~DgdG~IdfdEFl~lL~~lg~~~seEEL~eaFk~fDkDgdG~Is~dEL~~vL~~ 243 (644)
T PLN02964 180 FARRILAIVDYDEDGQLSFSEFSDLIKAFGNLVAANKKEELFKAADLNGDGVVTIDELAALLAL 243 (644)
T ss_pred HHHHHHHHhCCCCCCeEcHHHHHHHHHHhccCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHh
Confidence 3788999884444588999999999999986544444555555666667899999999999888
No 55
>smart00862 Trans_reg_C Transcriptional regulatory protein, C terminal. This domain is almost always found associated with the response regulator receiver domain. It may play a role in DNA binding.
Probab=39.56 E-value=69 Score=21.90 Aligned_cols=52 Identities=15% Similarity=0.118 Sum_probs=38.0
Q ss_pred CCcHHHHHHHHhhCcCccccccHHHHHHH-hHHcc-CCcHHHHHHHhHHHHHHhC
Q 027218 67 HTDVRILMLAWKMKAEKQGYFTLEEWRRG-LKALR-ADTVNKLKKALPDLEKEVK 119 (226)
Q Consensus 67 ~ed~~~LvLa~~l~a~~~g~~tr~eF~~g-~~~l~-~~sl~~lk~~l~~l~~~l~ 119 (226)
+..-+.-+|+.++..+.. .+|+++..+- |..-. ..+...++.+|..|++.|.
T Consensus 6 Lt~~e~~lL~~L~~~~~~-~vs~~~l~~~lw~~~~~~~~~~~l~~~i~~LR~~l~ 59 (78)
T smart00862 6 LTPKEFRLLELLLRNPGR-VVSREELLEAVWGDDDDDVDDNTLDVHISRLRKKLE 59 (78)
T ss_pred cCHHHHHHHHHHHhCCCC-ccCHHHHHHHHcCCCCCCCccchHHHHHHHHHHHHh
Confidence 344555677888877555 7999999996 44322 4566789999999999995
No 56
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=38.55 E-value=1.7e+02 Score=22.07 Aligned_cols=52 Identities=15% Similarity=0.192 Sum_probs=45.6
Q ss_pred CCCCHHHHHHHHHhhCCCCCcHHHHHHHHhhCcCccccccHHHHHHHhHHcc
Q 027218 49 GMIDPEGIESLCSDIEVSHTDVRILMLAWKMKAEKQGYFTLEEWRRGLKALR 100 (226)
Q Consensus 49 ~~I~~dG~~~~~~DLgv~~ed~~~LvLa~~l~a~~~g~~tr~eF~~g~~~l~ 100 (226)
+.|..+-+++||..-||+......-.++..|+..+...|..++=..-.+++-
T Consensus 13 n~iT~~eLlkyskqy~i~it~~QA~~I~~~lr~k~inIfn~~~r~~llkeia 64 (85)
T PF11116_consen 13 NNITAKELLKYSKQYNISITKKQAEQIANILRGKNINIFNEQERKKLLKEIA 64 (85)
T ss_pred hcCCHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH
Confidence 5699999999999999999999999999999999999998887766666653
No 57
>PF07848 PaaX: PaaX-like protein; InterPro: IPR012906 This entry describes the N-terminal region of proteins that are similar to, and nclude, the product of the paaX gene of Escherichia coli (P76086 from SWISSPROT). PaaX is a transcriptional regulator that is always found in association with operons believed to be involved in the degradation of phenylacetic acid []. The gene product has been shown to bind to the promoter sites and repress their transcription []. ; PDB: 3KFW_X 3L09_B.
Probab=38.05 E-value=24 Score=25.37 Aligned_cols=39 Identities=26% Similarity=0.256 Sum_probs=29.7
Q ss_pred HHHHHHHHHhcCCCCCCCCHHHHHHHHHhhCCCCCcHHH
Q 027218 34 ERIDNLFYSYANKSSGMIDPEGIESLCSDIEVSHTDVRI 72 (226)
Q Consensus 34 ~~l~~lFd~Y~d~~~~~I~~dG~~~~~~DLgv~~ed~~~ 72 (226)
+-|-.+|-.|--+.++.|...+++++++.+||++..+.+
T Consensus 4 Sli~tl~Gdy~~~~g~~i~~~~Li~ll~~~Gv~e~avR~ 42 (70)
T PF07848_consen 4 SLIVTLLGDYLRPRGGWIWVASLIRLLAAFGVSESAVRT 42 (70)
T ss_dssp HHHHHHHHHHCCTTTS-EEHHHHHHHHCCTT--HHHHHH
T ss_pred eehHHHHHHHhccCCCceeHHHHHHHHHHcCCChHHHHH
Confidence 456678989987777889999999999999999876554
No 58
>PF00046 Homeobox: Homeobox domain not present here.; InterPro: IPR001356 The homeobox domain was first identified in a number of drosophila homeotic and segmentation proteins, but is now known to be well-conserved in many other animals, including vertebrates [, , ]. Hox genes encode homeodomain-containing transcriptional regulators that operate differential genetic programs along the anterior-posterior axis of animal bodies []. The domain binds DNA through a helix-turn-helix (HTH) structure. The HTH motif is characterised by two alpha-helices, which make intimate contacts with the DNA and are joined by a short turn. The second helix binds to DNA via a number of hydrogen bonds and hydrophobic interactions, which occur between specific side chains and the exposed bases and thymine methyl groups within the major groove of the DNA []. The first helix helps to stabilise the structure. The motif is very similar in sequence and structure in a wide range of DNA-binding proteins (e.g., cro and repressor proteins, homeotic proteins, etc.). One of the principal differences between HTH motifs in these different proteins arises from the stereo-chemical requirement for glycine in the turn which is needed to avoid steric interference of the beta-carbon with the main chain: for cro and repressor proteins the glycine appears to be mandatory, while for many of the homeotic and other DNA-binding proteins the requirement is relaxed.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2DA3_A 1LFB_A 2LFB_A 2ECB_A 2DA5_A 3D1N_O 3A03_A 2XSD_C 3CMY_A 1AHD_P ....
Probab=34.69 E-value=59 Score=21.32 Aligned_cols=38 Identities=16% Similarity=0.330 Sum_probs=28.4
Q ss_pred hhhHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhhCCCCCcHHH
Q 027218 30 SKEMERIDNLFYSYANKSSGMIDPEGIESLCSDIEVSHTDVRI 72 (226)
Q Consensus 30 ~~~~~~l~~lFd~Y~d~~~~~I~~dG~~~~~~DLgv~~ed~~~ 72 (226)
+.....|++.|+. + ..++.+-+..++..|||++..|..
T Consensus 9 ~~q~~~L~~~f~~--~---~~p~~~~~~~la~~l~l~~~~V~~ 46 (57)
T PF00046_consen 9 KEQLKVLEEYFQE--N---PYPSKEEREELAKELGLTERQVKN 46 (57)
T ss_dssp HHHHHHHHHHHHH--S---SSCHHHHHHHHHHHHTSSHHHHHH
T ss_pred HHHHHHHHHHHHH--h---cccccccccccccccccccccccc
Confidence 3456777788875 2 367788899999999999876643
No 59
>PLN02230 phosphoinositide phospholipase C 4
Probab=33.77 E-value=1.1e+02 Score=30.85 Aligned_cols=66 Identities=17% Similarity=0.252 Sum_probs=43.8
Q ss_pred hHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhhCC-----CCCcHHHHHHHHhhC-----cCccccccHHHHHHHhHH
Q 027218 32 EMERIDNLFYSYANKSSGMIDPEGIESLCSDIEV-----SHTDVRILMLAWKMK-----AEKQGYFTLEEWRRGLKA 98 (226)
Q Consensus 32 ~~~~l~~lFd~Y~d~~~~~I~~dG~~~~~~DLgv-----~~ed~~~LvLa~~l~-----a~~~g~~tr~eF~~g~~~ 98 (226)
.+..+..+|.+|.+.. +.++.+++.+|+.+-+= ++++..-++....-. ...-+.+|.++|..-+..
T Consensus 27 p~~ei~~lf~~~s~~~-~~mt~~~l~~FL~~~Q~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~~yL~s 102 (598)
T PLN02230 27 PVADVRDLFEKYADGD-AHMSPEQLQKLMAEEGGGEGETSLEEAERIVDEVLRRKHHIAKFTRRNLTLDDFNYYLFS 102 (598)
T ss_pred CcHHHHHHHHHHhCCC-CccCHHHHHHHHHHhCCCcccCCHHHHHHHHHHHHhhccccccccccccCHHHHHHHHcC
Confidence 4568889999997544 69999999999987762 233344444322111 112345899999887644
No 60
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=32.94 E-value=2.2e+02 Score=21.61 Aligned_cols=68 Identities=12% Similarity=0.247 Sum_probs=49.8
Q ss_pred hhHHHHHHHHHHhcCCCCCCCCHHHHHHHHH-hhC---CCCCcHHHHH-HHHhhCcCccccccHHHHHHHhHHc
Q 027218 31 KEMERIDNLFYSYANKSSGMIDPEGIESLCS-DIE---VSHTDVRILM-LAWKMKAEKQGYFTLEEWRRGLKAL 99 (226)
Q Consensus 31 ~~~~~l~~lFd~Y~d~~~~~I~~dG~~~~~~-DLg---v~~ed~~~Lv-La~~l~a~~~g~~tr~eF~~g~~~l 99 (226)
.....|..+|.+|+ .+.+.++-..+.+|++ .|+ -++.|+.++= +...|....=|+++-.||+.-...+
T Consensus 5 ~ai~~lI~~FhkYa-G~~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l 77 (91)
T cd05024 5 HSMEKMMLTFHKFA-GEKNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAGL 77 (91)
T ss_pred HHHHHHHHHHHHHc-CCCCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 35678889999999 3446899999988885 444 2345666554 5567788888999999998766554
No 61
>PLN02223 phosphoinositide phospholipase C
Probab=32.84 E-value=89 Score=31.17 Aligned_cols=66 Identities=12% Similarity=0.015 Sum_probs=42.2
Q ss_pred hHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhh-------CCCCCcHHHHHHHHhh------CcCccccccHHHHHHHhHH
Q 027218 32 EMERIDNLFYSYANKSSGMIDPEGIESLCSDI-------EVSHTDVRILMLAWKM------KAEKQGYFTLEEWRRGLKA 98 (226)
Q Consensus 32 ~~~~l~~lFd~Y~d~~~~~I~~dG~~~~~~DL-------gv~~ed~~~LvLa~~l------~a~~~g~~tr~eF~~g~~~ 98 (226)
.+..+..+|++|.+ +.+.|+.+++.+|+.=| +...++...++-...- ++..-+.++.++|..-+..
T Consensus 14 ~p~~v~~~f~~~~~-~~~~m~~~~l~~fl~~l~~~q~e~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~l~~~~f~~~L~s 92 (537)
T PLN02223 14 QPDLILNFFGNEFH-GYDDDMPELLPRFIELLDTEKDEDGAGLNAAEKIAAELKRRKCDILAFRNLRCLELDHLNEFLFS 92 (537)
T ss_pred CcHHHHHHHHHhhc-CCCCCCHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcccchhhhhccccCHHHHHHHhcC
Confidence 34567799999974 34789999999999433 5556666555544221 1122245777777776644
No 62
>PF00486 Trans_reg_C: Transcriptional regulatory protein, C terminal; InterPro: IPR001867 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain that is almost always found associated with the response regulator receiver domain (see IPR001789 from INTERPRO). It may play a role in DNA binding [].; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2K4J_A 2JPB_A 1ODD_A 1OPC_A 1KGS_A 2PMU_E 2JZY_A 1GXP_B 1QQI_A 2Z33_A ....
Probab=31.39 E-value=91 Score=21.32 Aligned_cols=50 Identities=16% Similarity=0.141 Sum_probs=36.1
Q ss_pred HHHHHHHHhhCcCccccccHHHHHHHhHHccC-CcHHHHHHHhHHHHHHhCC
Q 027218 70 VRILMLAWKMKAEKQGYFTLEEWRRGLKALRA-DTVNKLKKALPDLEKEVKR 120 (226)
Q Consensus 70 ~~~LvLa~~l~a~~~g~~tr~eF~~g~~~l~~-~sl~~lk~~l~~l~~~l~~ 120 (226)
.+.-+|+.++..+. -.+||++..+..-.-.. .+-..++.+|..|++.|.+
T Consensus 9 ~e~~lL~~L~~~~~-~~vs~~~l~~~~w~~~~~~~~~~l~~~I~rLR~kL~~ 59 (77)
T PF00486_consen 9 KEFRLLELLLRNPG-RVVSREELIEALWGDEEDVSDNSLDVHISRLRKKLED 59 (77)
T ss_dssp HHHHHHHHHHHTTT-SEEEHHHHHHHHTSSSSTTCTHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhCCC-CCCCHHHhCChhhhcccccchhhHHHHHHHHHHHHhh
Confidence 34455566665533 37999999986544444 7788999999999999943
No 63
>PF04659 Arch_fla_DE: Archaeal flagella protein ; InterPro: IPR006752 Archaeal flagella are unique motility structures, and the absence of bacterial structural motility genes in the complete genome sequences of flagellated archaeal species has always suggested that archaeal flagellar biogenesis is likely mediated by novel components. FlaD and FlaE, are present in the cell as membrane-associated proteins but are not major components of isolated flagellar filaments. Interestingly, flaD was found to encode two proteins, each translated from a separate ribosome binding site. This group of sequences contain the archaeal flaD and flaE proteins. The conserved region that defines these sequences is found in the N-teminal region of flaE but towards the C-terminal region of flaD [].; GO: 0001539 ciliary or flagellar motility
Probab=29.92 E-value=1.2e+02 Score=23.35 Aligned_cols=52 Identities=13% Similarity=0.305 Sum_probs=35.9
Q ss_pred HHHHHHHHhcC-------------CCCcCChhhHHHHHHHHhhcCCCCCCCCCCCCCchhhHHHHH
Q 027218 166 DYLIEYLKIQS-------------DYKVINMDQWMGFYRFCNEISFPDFNNYDPNLAWPLVLDNFV 218 (226)
Q Consensus 166 ~~W~~Fl~~~~-------------~~k~IskD~W~~~l~F~~~v~~~dls~YDe~~AWP~lIDeFV 218 (226)
=.|++||.+.. .-.-||.+.=.+++.|++-+. .+-...+..+.|...+|+=+
T Consensus 22 ~eWLefLve~~G~~~~~~~L~YY~~igWISe~V~~~L~~~~~G~~-~~~~~~~~~~~~~Lt~~DH~ 86 (99)
T PF04659_consen 22 FEWLEFLVERVGHNNAADALDYYESIGWISEEVREQLLKYLKGFK-YDHDDFEWKPSWKLTIDDHI 86 (99)
T ss_pred HHHHHHHHHHcccccHHHHHHHHHHcCCcCHHHHHHHHHHHhCCC-CCccccccCCCCCCCHHHHH
Confidence 35999997642 124699999999999998764 23332333688888887643
No 64
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=29.34 E-value=1.2e+02 Score=22.60 Aligned_cols=65 Identities=14% Similarity=0.243 Sum_probs=40.2
Q ss_pred HHHHHHHHhhCcC--ccccccHHHHHHHhHH-ccCCcHHHHHHHhHHHHHHhC----CcchhHHHHHhhhhhcc
Q 027218 70 VRILMLAWKMKAE--KQGYFTLEEWRRGLKA-LRADTVNKLKKALPDLEKEVK----RPTNFQDFYAFAFRYCL 136 (226)
Q Consensus 70 ~~~LvLa~~l~a~--~~g~~tr~eF~~g~~~-l~~~sl~~lk~~l~~l~~~l~----~~~~Fk~~Y~ftF~~~~ 136 (226)
+.+|+-+...=+. .-|.|+++|+..-++. +|-- +... ..+..+-+.+. ..-.|.+|-......+.
T Consensus 7 i~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~-ls~~-~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l~~ 78 (89)
T cd05022 7 IETLVSNFHKASVKGGKESLTASEFQELLTQQLPHL-LKDV-EGLEEKMKNLDVNQDSKLSFEEFWELIGELAK 78 (89)
T ss_pred HHHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhh-ccCH-HHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHH
Confidence 4566666666555 6799999999999998 7621 1111 33444444442 23368887777666654
No 65
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=28.78 E-value=2.1e+02 Score=25.39 Aligned_cols=68 Identities=13% Similarity=0.332 Sum_probs=53.1
Q ss_pred hhHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhhCCCCCcHHHHHHHHhhCcCccccccHHHHHHHhHH
Q 027218 31 KEMERIDNLFYSYANKSSGMIDPEGIESLCSDIEVSHTDVRILMLAWKMKAEKQGYFTLEEWRRGLKA 98 (226)
Q Consensus 31 ~~~~~l~~lFd~Y~d~~~~~I~~dG~~~~~~DLgv~~ed~~~LvLa~~l~a~~~g~~tr~eF~~g~~~ 98 (226)
+..+.+..+|.+|-.+.++.|+..-+-++.|-||-.-.++.+=-+--.+--..-|.+|--||+-....
T Consensus 96 kqIk~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgapQTHL~lK~mikeVded~dgklSfreflLIfrk 163 (244)
T KOG0041|consen 96 KQIKDAESMFKQYDEDRDGFIDLMELKRMMEKLGAPQTHLGLKNMIKEVDEDFDGKLSFREFLLIFRK 163 (244)
T ss_pred HHHHHHHHHHHHhcccccccccHHHHHHHHHHhCCchhhHHHHHHHHHhhcccccchhHHHHHHHHHH
Confidence 35566778999997666689999999999999998877777666666666666788998888876543
No 66
>PHA01083 hypothetical protein
Probab=28.58 E-value=82 Score=26.24 Aligned_cols=47 Identities=13% Similarity=0.005 Sum_probs=36.6
Q ss_pred CCCCHHHHHHHHHhhCCCCCcHHHHHHHHhhCcCccccccHHHHHHHhHHc
Q 027218 49 GMIDPEGIESLCSDIEVSHTDVRILMLAWKMKAEKQGYFTLEEWRRGLKAL 99 (226)
Q Consensus 49 ~~I~~dG~~~~~~DLgv~~ed~~~LvLa~~l~a~~~g~~tr~eF~~g~~~l 99 (226)
..|+-+-+.++++-+|+||+.+...+.+.+-+-|.. |.-|.+-.+++
T Consensus 42 ~~i~de~A~~LAe~aGiDp~eall~i~aDraetp~~----kalWesIaKKl 88 (149)
T PHA01083 42 TYISDEEAIFLAESAGIDPEIALLGCHADRNENPRA----KAIWESIAKKQ 88 (149)
T ss_pred CCCCHHHHHHHHHHhCCCHHHHHHHHHHHhcCCHHH----HHHHHHHHHHH
Confidence 368889999999999999998888888888776554 55566655554
No 67
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=28.16 E-value=63 Score=18.66 Aligned_cols=17 Identities=18% Similarity=0.421 Sum_probs=14.5
Q ss_pred CCCCCHHHHHHHHHhhC
Q 027218 48 SGMIDPEGIESLCSDIE 64 (226)
Q Consensus 48 ~~~I~~dG~~~~~~DLg 64 (226)
.+.|+.+|+..+|+.|.
T Consensus 11 ~N~i~~~G~~~L~~~L~ 27 (28)
T smart00368 11 NNKLGDEGARALAEALK 27 (28)
T ss_pred CCCCCHHHHHHHHHHhc
Confidence 47899999999998773
No 68
>PF06992 Phage_lambda_P: Replication protein P; InterPro: IPR009731 This family consists of several Bacteriophage lambda replication protein P like proteins. The bacteriophage lambda P protein promoters replication of the phage chromosome by recruiting a key component of the cellular replication machinery to the viral origin. Specifically, P protein delivers one or more molecules of Escherichia coli DnaB helicase to a nucleoprotein structure formed by the lambda O initiator at the lambda replication origin [].; GO: 0006270 DNA-dependent DNA replication initiation
Probab=28.08 E-value=90 Score=27.83 Aligned_cols=31 Identities=6% Similarity=0.240 Sum_probs=28.1
Q ss_pred cHHHHHHHhHHccCCcHHHHHHHhHHHHHHh
Q 027218 88 TLEEWRRGLKALRADTVNKLKKALPDLEKEV 118 (226)
Q Consensus 88 tr~eF~~g~~~l~~~sl~~lk~~l~~l~~~l 118 (226)
.|.+|+.++.+.|+.|+++++.-|...+..-
T Consensus 66 aKr~Wi~~f~engI~t~eQv~~Gm~~aR~~~ 96 (233)
T PF06992_consen 66 AKRQWIKAFAENGITTMEQVRAGMRRARASE 96 (233)
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHHHhcC
Confidence 4999999999999999999999999888754
No 69
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=27.70 E-value=43 Score=24.20 Aligned_cols=16 Identities=25% Similarity=0.424 Sum_probs=13.9
Q ss_pred cccccHHHHHHHhHHc
Q 027218 84 QGYFTLEEWRRGLKAL 99 (226)
Q Consensus 84 ~g~~tr~eF~~g~~~l 99 (226)
.++|||+||++.++..
T Consensus 39 ~~kIsR~~fvr~lR~I 54 (70)
T PF12174_consen 39 KKKISREEFVRKLRQI 54 (70)
T ss_pred HCCCCHHHHHHHHHHH
Confidence 5789999999998874
No 70
>PF06535 RGM_N: Repulsive guidance molecule (RGM) N-terminus; InterPro: IPR010536 This entry represents the N-terminal region of several mammalian and one bird sequence from Gallus gallus (Chicken). All of the mammalian proteins are hypothetical and have no known function but Q8JG54 from SWISSPROT from the chicken is annotated as being a repulsive guidance molecule (RGM). RGM is a GPI-linked axon guidance molecule of the retinotectal system. RGM is repulsive for a subset of axons, those from the temporal half of the retina. Temporal retinal axons invade the anterior optic tectum in a superficial layer, and encounter RGM expressed in a gradient with increasing concentration along the anterior-posterior axis. Temporal axons are able to receive posterior-dependent information by sensing gradients or concentrations of guidance cues. Thus, RGM is likely to provide positional information for temporal axons invading the optic tectum in the stratum opticum [].
Probab=27.50 E-value=18 Score=30.49 Aligned_cols=16 Identities=31% Similarity=0.800 Sum_probs=10.5
Q ss_pred CCCCCCCCCCCchhhHH
Q 027218 199 PDFNNYDPNLAWPLVLD 215 (226)
Q Consensus 199 ~dls~YDe~~AWP~lID 215 (226)
+++.-=-.+|||| |||
T Consensus 115 ~~fqTC~v~GAWP-LId 130 (161)
T PF06535_consen 115 DEFQTCKVEGAWP-LID 130 (161)
T ss_pred CCceeeeeeccee-eec
Confidence 3444444789999 555
No 71
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=26.84 E-value=1.9e+02 Score=19.78 Aligned_cols=48 Identities=15% Similarity=0.131 Sum_probs=34.7
Q ss_pred CCHHHHHHHHHhhCCCCCcHHHHHHHHhhCcCccccccHHHHHHHhHH
Q 027218 51 IDPEGIESLCSDIEVSHTDVRILMLAWKMKAEKQGYFTLEEWRRGLKA 98 (226)
Q Consensus 51 I~~dG~~~~~~DLgv~~ed~~~LvLa~~l~a~~~g~~tr~eF~~g~~~ 98 (226)
++..-+.+|+..++|++++--...|-..+.-..-|....+||+.=.+.
T Consensus 2 msf~Evk~lLk~~NI~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~ 49 (51)
T PF14788_consen 2 MSFKEVKKLLKMMNIEMDDEYARQLFQECDKSQSGRLEGEEFEEFYKR 49 (51)
T ss_dssp BEHHHHHHHHHHTT----HHHHHHHHHHH-SSSSSEBEHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHccCcCHHHHHHHHHHhcccCCCCccHHHHHHHHHH
Confidence 345567889999999999988888888888888899999999876554
No 72
>COG0177 Nth Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair]
Probab=26.80 E-value=63 Score=28.29 Aligned_cols=36 Identities=22% Similarity=0.240 Sum_probs=29.7
Q ss_pred hHHHHHHHHHHhcCCCC-CCCCHHHHHHHHHhhCCCC
Q 027218 32 EMERIDNLFYSYANKSS-GMIDPEGIESLCSDIEVSH 67 (226)
Q Consensus 32 ~~~~l~~lFd~Y~d~~~-~~I~~dG~~~~~~DLgv~~ 67 (226)
..+...+||.+|.++++ -.++.+++..++...|+--
T Consensus 47 vn~at~~Lf~~~~t~e~l~~a~~~~l~~~I~~iGlyr 83 (211)
T COG0177 47 VNKATPALFKRYPTPEDLLNADEEELEELIKSIGLYR 83 (211)
T ss_pred HHHHHHHHHHHcCCHHHHHcCCHHHHHHHHHhcCCcH
Confidence 45566789999998765 6799999999999998764
No 73
>PF01023 S_100: S-100/ICaBP type calcium binding domain; InterPro: IPR013787 The calcium-binding domain found in S100 and CaBP-9k proteins is a subfamily of the EF-hand calcium-binding domain []. S100s are small dimeric acidic calcium and zinc-binding proteins abundant in the brain, with S100B playing an important role in modulating the proliferation and differentiation of neurons and glia cells []. S100 proteins have two different types of calcium-binding sites: a low affinity one with a special structure, and a 'normal' EF-hand type high-affinity site. Calbindin-D9k (CaBP-9k) also belong to this family of proteins, but it does not form dimers. CaBP-9k is a cytosolic protein expressed in a variety of tissues. Although its precise function is unknown, it appears to be under the control of the steroid hormones oestrogen and progesterone in the female reproductive system []. In the intestine, CaBP-9k may be involved in calcium absorption by mediating intracellular diffusion []. This entry represents a subdomain of the calcium-binding domain found in S100, CaBP-9k, and related proteins.; PDB: 2RGI_A 4DUQ_B 2KAY_B 2KAX_A 2CNP_A 1CNP_A 1A03_A 1JWD_B 2JTT_A 1XK4_B ....
Probab=26.55 E-value=1.1e+02 Score=19.96 Aligned_cols=30 Identities=23% Similarity=0.433 Sum_probs=23.2
Q ss_pred hHHHHHHHHHHhcCC--CCCCCCHHHHHHHHH
Q 027218 32 EMERIDNLFYSYANK--SSGMIDPEGIESLCS 61 (226)
Q Consensus 32 ~~~~l~~lFd~Y~d~--~~~~I~~dG~~~~~~ 61 (226)
+...|..+|.+|+.. +.+.+.-+.+-+|++
T Consensus 4 ai~~iI~vFhkYa~~~Gd~~~Lsk~Elk~Ll~ 35 (44)
T PF01023_consen 4 AIETIIDVFHKYAGKEGDKDTLSKKELKELLE 35 (44)
T ss_dssp HHHHHHHHHHHHHTSSSSTTSEEHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCCCeEcHHHHHHHHH
Confidence 466788999999854 347788888888775
No 74
>PF13348 Y_phosphatase3C: Tyrosine phosphatase family C-terminal region; PDB: 1YWF_A 2OZ5_B.
Probab=26.49 E-value=26 Score=24.27 Aligned_cols=53 Identities=11% Similarity=0.199 Sum_probs=23.7
Q ss_pred cCCCCCchhhHHHhhCCCCCChhhHHHHHHHHHHhcCCCCCCCCHHHHHHHH-HhhCCCCCcHHHHH
Q 027218 9 TGQTNSTDATDLFRSASSKASSKEMERIDNLFYSYANKSSGMIDPEGIESLC-SDIEVSHTDVRILM 74 (226)
Q Consensus 9 ~~~~~~~~A~d~~~~~~~~~~~~~~~~l~~lFd~Y~d~~~~~I~~dG~~~~~-~DLgv~~ed~~~Lv 74 (226)
+......+++..+.+. ..+-|...|+.-... ..|+..|+ +-||++++++.-|.
T Consensus 11 ~~~~~~~~~~~~~~~~-------~~e~l~~~l~~i~~~------yGs~e~Yl~~~lgl~~~~i~~Lr 64 (68)
T PF13348_consen 11 GADDDARENLRSLMSV-------RPEYLEAALDAIDER------YGSVENYLREELGLSEEDIERLR 64 (68)
T ss_dssp -----------HHHS---------HHHHHHHHHHHHHH------HSSHHHHHHHT-T--HHHHHHHH
T ss_pred hhhhhhhhhhhhhcCc-------cHHHHHHHHHHHHHH------cCCHHHHHHHcCCCCHHHHHHHH
Confidence 3334445556666654 234555555544321 22788999 78899999987764
No 75
>PF08671 SinI: Anti-repressor SinI; InterPro: IPR010981 The SinR repressor is part of a group of Sin (sporulation inhibition) proteins in Bacillus subtilis that regulate the commitment to sporulation in response to extreme adversity []. SinR is a tetrameric repressor protein that binds to the promoters of genes essential for entry into sporulation and prevents their transcription. This repression is overcome through the activity of SinI, which disrupts the SinR tetramer through the formation of a SinI-SinR heterodimer, thereby allowing sporulation to proceed. The SinR structure consists of two domains: a dimerisation domain stabilised by a hydrophobic core, and a DNA-binding domain that is identical to domains of the bacteriophage 434 CI and Cro proteins that regulate prophage induction. The dimerisation domain is a four-helical bundle formed from two helices from the C-terminal residues of SinR and two helices from the central residues of SinI. These regions in SinR and SinI are similar in both structure and sequence. The interaction of SinR monomers to form tetramers is weaker than between SinR and SinI, since SinI can effectively disrupt SinR tetramers. This entry represents the dimerisation domain in both SinI and SinR proteins.; GO: 0005488 binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1B0N_A 2YAL_A.
Probab=26.45 E-value=76 Score=19.31 Aligned_cols=27 Identities=15% Similarity=0.209 Sum_probs=19.5
Q ss_pred HHHHHHHhcCCCCcCChhhHHHHHHHHh
Q 027218 167 YLIEYLKIQSDYKVINMDQWMGFYRFCN 194 (226)
Q Consensus 167 ~W~~Fl~~~~~~k~IskD~W~~~l~F~~ 194 (226)
.|++.+.+. ..-+||++.=+.||.|.+
T Consensus 4 EW~~Li~eA-~~~Gls~eeir~FL~~~k 30 (30)
T PF08671_consen 4 EWVELIKEA-KESGLSKEEIREFLEFNK 30 (30)
T ss_dssp HHHHHHHHH-HHTT--HHHHHHHHHHHH
T ss_pred HHHHHHHHH-HHcCCCHHHHHHHHHhCC
Confidence 599999875 346899999999998753
No 76
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=26.37 E-value=2.9e+02 Score=24.45 Aligned_cols=69 Identities=14% Similarity=0.165 Sum_probs=53.6
Q ss_pred hHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhhCCCCCc-HHHHHHHHhhCcCccccccHHHHHHHhHHcc
Q 027218 32 EMERIDNLFYSYANKSSGMIDPEGIESLCSDIEVSHTD-VRILMLAWKMKAEKQGYFTLEEWRRGLKALR 100 (226)
Q Consensus 32 ~~~~l~~lFd~Y~d~~~~~I~~dG~~~~~~DLgv~~ed-~~~LvLa~~l~a~~~g~~tr~eF~~g~~~l~ 100 (226)
....|..+|..=-......|..+-+++-+.-.+.++=+ -.+-.|-.++.....|.|.-+||..-|+.++
T Consensus 55 ~~~~~~~~f~~vD~d~sg~i~~~eLq~aLsn~~~~~Fs~~TcrlmI~mfd~~~~G~i~f~EF~~Lw~~i~ 124 (221)
T KOG0037|consen 55 TFPQLAGWFQSVDRDRSGRILAKELQQALSNGTWSPFSIETCRLMISMFDRDNSGTIGFKEFKALWKYIN 124 (221)
T ss_pred ccHHHHHHHHhhCccccccccHHHHHHHhhcCCCCCCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHHHH
Confidence 44567777776644445789999999998888888744 4455667788999999999999998887753
No 77
>smart00549 TAFH TAF homology. Domain in Drosophila nervy, CBFA2T1, human TAF105, human TAF130, and Drosophila TAF110. Also known as nervy homology region 1 (NHR1).
Probab=25.91 E-value=1.5e+02 Score=22.75 Aligned_cols=61 Identities=30% Similarity=0.351 Sum_probs=43.2
Q ss_pred HHHHHHhhC-CCC-CcHHHHHHHHhhCcCccccccHHHHHHHhHHc-c----CCcHHHHHHHhHHHHHHhCCc
Q 027218 56 IESLCSDIE-VSH-TDVRILMLAWKMKAEKQGYFTLEEWRRGLKAL-R----ADTVNKLKKALPDLEKEVKRP 121 (226)
Q Consensus 56 ~~~~~~DLg-v~~-ed~~~LvLa~~l~a~~~g~~tr~eF~~g~~~l-~----~~sl~~lk~~l~~l~~~l~~~ 121 (226)
+++|..+.+ .+. +.+..||++-.- |.++-|||...+++. + -.=+.=||+.||-|++++.+.
T Consensus 12 Li~ls~~~~qpe~~~~Vr~LV~~L~~-----~~i~~EeF~~~Lq~~lns~~qP~lvPFLK~slp~Lr~~l~~~ 79 (92)
T smart00549 12 LIQLSNDISQPEVAERVRTLVLGLVN-----GTITAEEFTSRLQEALNSPLQPYLIPFLKNSLPLLRRELLHC 79 (92)
T ss_pred HHHHhcCCCcchHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHcCCCCchhHHHHHHhhHHHHHHHHHH
Confidence 556666666 443 557777776554 469999999998773 2 334677899999999888543
No 78
>cd00383 trans_reg_C Effector domain of response regulator. Bacteria and certain eukaryotes like protozoa and higher plants use two-component signal transduction systems to detect and respond to changes in the environment. The system consists of a sensor histidine kinase and a response regulator. The former autophosphorylates in a histidine residue on detecting an external stimulus. The phosphate is then transferred to an invariant aspartate residue in a highly conserved receiver domain of the response regulator. Phosphorylation activates a variable effector domain of the response regulator, which triggers the cellular response. The C-terminal effector domain contains DNA and RNA polymerase binding sites. Several dimers or monomers bind head to tail to small tandem repeats upstream of the genes. The RNA polymerase binding sites interact with the alpha or sigma subunite of RNA polymerase.
Probab=25.71 E-value=1.4e+02 Score=21.21 Aligned_cols=56 Identities=11% Similarity=0.048 Sum_probs=39.7
Q ss_pred hCCCCCcHHHHHHHHhhCcCccccccHHHHHHHhHHccC-CcHHHHHHHhHHHHHHhC
Q 027218 63 IEVSHTDVRILMLAWKMKAEKQGYFTLEEWRRGLKALRA-DTVNKLKKALPDLEKEVK 119 (226)
Q Consensus 63 Lgv~~ed~~~LvLa~~l~a~~~g~~tr~eF~~g~~~l~~-~sl~~lk~~l~~l~~~l~ 119 (226)
-.|.+..-+..+|+.++..+.. .+||++-.+.+-.... .+-..++.+|..|++.|.
T Consensus 20 ~~v~Lt~~e~~lL~~L~~~~~~-~vs~~~l~~~lw~~~~~~~~~~l~~~I~rLRkkl~ 76 (95)
T cd00383 20 EPVELTPKEFELLELLARNPGR-VLSREQLLEAVWGDDYDVDDRTVDVHISRLRKKLE 76 (95)
T ss_pred EEEEeCHHHHHHHHHHHhCCCC-cCCHHHHHHHhcCCCCCCCcccHHHHHHHHHHHhc
Confidence 3455555666777777766543 7899999987643332 356679999999999995
No 79
>COG2922 Smg Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.47 E-value=61 Score=26.98 Aligned_cols=35 Identities=20% Similarity=0.348 Sum_probs=29.3
Q ss_pred HHHHHHHhcCCCC-CCCCHHHHHHHHHhhCCCCCcH
Q 027218 36 IDNLFYSYANKSS-GMIDPEGIESLCSDIEVSHTDV 70 (226)
Q Consensus 36 l~~lFd~Y~d~~~-~~I~~dG~~~~~~DLgv~~ed~ 70 (226)
|-=||+.|.+.+. =.++.|.+...++|.|.+++|+
T Consensus 5 l~YLfE~y~h~ea~l~vd~d~L~~~L~~aGF~~~dI 40 (157)
T COG2922 5 LMYLFETYIHNEAELPVDQDSLENDLEDAGFDREDI 40 (157)
T ss_pred HHHHHHHHhccCCCCCcCHHHHHhHHHHcCCCHHHH
Confidence 3458999998765 4588999999999999999886
No 80
>PF07261 DnaB_2: Replication initiation and membrane attachment; InterPro: IPR006343 This entry represents a domain found in several bacterial replication initiation and membrane attachment proteins, DnaB and DnaD. The DnaD protein is a component of the PriA primosome. The PriA primosome functions to recruit the replication fork helicase onto the DNA []. Members, both chromosomal or phage-associated, are found in the Bacillus/Clostridium group of Gram-positive bacteria []. The DnaB protein is essential for both replication initiation and membrane attachment of the origin region of the chromosome and Plasmid pUB110 in Bacillus subtilis. It is known that there are two different classes (DnaBI and DnaBII) in the DnaB mutants; DnaBI is essential for both chromosome and pUB110 replication, whereas DnaBII is necessary only for chromosome replication []. This domain tends to be found towards the C terminus of DnaB and DnaD proteins and is alpha helical in nature.; PDB: 2I5U_A 2ZC2_A.
Probab=24.18 E-value=9.8 Score=26.70 Aligned_cols=21 Identities=14% Similarity=0.007 Sum_probs=11.7
Q ss_pred HHHHHhHHccCCcHHHHHHHh
Q 027218 91 EWRRGLKALRADTVNKLKKAL 111 (226)
Q Consensus 91 eF~~g~~~l~~~sl~~lk~~l 111 (226)
.-++.|...|+.|+++..++.
T Consensus 55 ~Il~~W~~~gi~t~e~~~~~~ 75 (77)
T PF07261_consen 55 KILNNWKQKGIKTVEDAEEYE 75 (77)
T ss_dssp HHHHHHHHCT--SCCCCT---
T ss_pred HHHHHHHHcCCCCHHHHHHHh
Confidence 456678888888877665543
No 81
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=24.01 E-value=3.4e+02 Score=26.97 Aligned_cols=65 Identities=22% Similarity=0.323 Sum_probs=48.4
Q ss_pred HHHHHHHHHhcCCCCCCCCHHHHHHHHHhh----CCCCCcHHHHHHHHhhCcCccccccHHHHHHHhHH
Q 027218 34 ERIDNLFYSYANKSSGMIDPEGIESLCSDI----EVSHTDVRILMLAWKMKAEKQGYFTLEEWRRGLKA 98 (226)
Q Consensus 34 ~~l~~lFd~Y~d~~~~~I~~dG~~~~~~DL----gv~~ed~~~LvLa~~l~a~~~g~~tr~eF~~g~~~ 98 (226)
+.|+.+|+---.+.++.|..+-...-|+-| .+...|-.++-||..|.-..=|.|.-.||++..+-
T Consensus 547 s~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAFrl 615 (631)
T KOG0377|consen 547 SSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGKIDLNEFLEAFRL 615 (631)
T ss_pred hhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCcccHHHHHHHHhh
Confidence 466777766544445788888887777654 46678888888888888888888888888887653
No 82
>PF13624 SurA_N_3: SurA N-terminal domain; PDB: 3NRK_A.
Probab=23.91 E-value=78 Score=24.91 Aligned_cols=60 Identities=20% Similarity=0.237 Sum_probs=24.3
Q ss_pred CCHHHHHHHHHhhCCCCCcHHHHHHHHhhCc-CccccccHHHHHHHhHHccCCcHHHHHHHh
Q 027218 51 IDPEGIESLCSDIEVSHTDVRILMLAWKMKA-EKQGYFTLEEWRRGLKALRADTVNKLKKAL 111 (226)
Q Consensus 51 I~~dG~~~~~~DLgv~~ed~~~LvLa~~l~a-~~~g~~tr~eF~~g~~~l~~~sl~~lk~~l 111 (226)
|.-.=+.+..+++||.+.|-.+--.-....+ ..-|.++++.|.+.++..|.+ .++++..|
T Consensus 84 I~~~ll~q~A~~~gi~vsd~ev~~~i~~~~~f~~~g~~~~~~f~~~L~~~g~t-~~~~~~~l 144 (154)
T PF13624_consen 84 IDQKLLLQEAKKLGISVSDAEVDDAIKQIPAFQENGKFDKEAFEEFLKQQGMT-EEEFKEEL 144 (154)
T ss_dssp HHHHHHHHHHHHTT----HHHHHHHHHH--HHHHH----HHHHHHHHH--------------
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhhcc-ccccchhh
Confidence 4444566788999999877665543333211 123889999999999988874 45555544
No 83
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=23.72 E-value=1e+02 Score=24.76 Aligned_cols=38 Identities=8% Similarity=0.162 Sum_probs=27.0
Q ss_pred hHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhhCCCCCc
Q 027218 32 EMERIDNLFYSYANKSSGMIDPEGIESLCSDIEVSHTD 69 (226)
Q Consensus 32 ~~~~l~~lFd~Y~d~~~~~I~~dG~~~~~~DLgv~~ed 69 (226)
..+-+.++|..|-....+.-+.+.+.+.++++|++++.
T Consensus 102 ~~~~~~~lf~a~~~~~~~i~~~~~l~~~a~~~Gld~~~ 139 (192)
T cd03022 102 AEAFARAVFRALWGEGLDIADPAVLAAVAAAAGLDADE 139 (192)
T ss_pred HHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHcCCCHHH
Confidence 45566688888765444545667788899999998753
No 84
>PLN02222 phosphoinositide phospholipase C 2
Probab=23.50 E-value=1.8e+02 Score=29.30 Aligned_cols=63 Identities=13% Similarity=0.254 Sum_probs=42.7
Q ss_pred HHHHHHHHHHhcCCCCCCCCHHHHHHHHHhhCCCC----CcHHHHHHHHhhCcCccccccHHHHHHHhHH
Q 027218 33 MERIDNLFYSYANKSSGMIDPEGIESLCSDIEVSH----TDVRILMLAWKMKAEKQGYFTLEEWRRGLKA 98 (226)
Q Consensus 33 ~~~l~~lFd~Y~d~~~~~I~~dG~~~~~~DLgv~~----ed~~~LvLa~~l~a~~~g~~tr~eF~~g~~~ 98 (226)
+..|..+|.+|.+ .+.|+.+++.+|+.+-+=++ ++...|+-.+ -....-+.++.++|..-+..
T Consensus 24 ~~ei~~if~~~~~--~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~ii~~~-~~~~~~~~~~~~gF~~yL~s 90 (581)
T PLN02222 24 PREIKTIFEKYSE--NGVMTVDHLHRFLIDVQKQDKATREDAQSIINSA-SSLLHRNGLHLDAFFKYLFG 90 (581)
T ss_pred cHHHHHHHHHhcC--CCCcCHHHHHHHHHHhcCCccCCHHHHHHHHHhh-hhhhhccCcCHHHHHHHhcC
Confidence 4588899999986 36899999999998766543 3333332222 12233466899999988755
No 85
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=23.47 E-value=1.2e+02 Score=15.35 Aligned_cols=16 Identities=38% Similarity=0.536 Sum_probs=8.4
Q ss_pred ccccccHHHHHHHhHH
Q 027218 83 KQGYFTLEEWRRGLKA 98 (226)
Q Consensus 83 ~~g~~tr~eF~~g~~~ 98 (226)
.-|.++..+|...++.
T Consensus 13 ~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 13 GDGKIDFEEFKDLLKA 28 (29)
T ss_pred CCCcEeHHHHHHHHHh
Confidence 3455555555555543
No 86
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=22.98 E-value=4.8e+02 Score=22.23 Aligned_cols=99 Identities=18% Similarity=0.259 Sum_probs=59.1
Q ss_pred hHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhhCCCCCcHHHHHHHHhh-CcCccccccHHHHHHHhHHccCC--c--HHH
Q 027218 32 EMERIDNLFYSYANKSSGMIDPEGIESLCSDIEVSHTDVRILMLAWKM-KAEKQGYFTLEEWRRGLKALRAD--T--VNK 106 (226)
Q Consensus 32 ~~~~l~~lFd~Y~d~~~~~I~~dG~~~~~~DLgv~~ed~~~LvLa~~l-~a~~~g~~tr~eF~~g~~~l~~~--s--l~~ 106 (226)
-..++-..|+.-.+. +.|+.+..++++.-.......-.=+-+|..+ --...|.|+|+|+..-+..+-.. + .++
T Consensus 67 ~~~rI~~~f~~~~~~--~~v~F~~Fv~~ls~f~~~~~~~~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~~~~e~ 144 (187)
T KOG0034|consen 67 LADRIIDRFDTDGNG--DPVDFEEFVRLLSVFSPKASKREKLRFAFRVYDLDGDGFISREELKQILRMMVGENDDMSDEQ 144 (187)
T ss_pred HHHHHHHHHhccCCC--CccCHHHHHHHHhhhcCCccHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCcchHHH
Confidence 334444444444332 2299999988888766654333345555544 56678999999999999886542 2 445
Q ss_pred HHHHhHHHHHHhC-C---cchhHHHHHhhh
Q 027218 107 LKKALPDLEKEVK-R---PTNFQDFYAFAF 132 (226)
Q Consensus 107 lk~~l~~l~~~l~-~---~~~Fk~~Y~ftF 132 (226)
+...+..+-.+.. | .-.|.++.++..
T Consensus 145 ~~~i~d~t~~e~D~d~DG~IsfeEf~~~v~ 174 (187)
T KOG0034|consen 145 LEDIVDKTFEEADTDGDGKISFEEFCKVVE 174 (187)
T ss_pred HHHHHHHHHHHhCCCCCCcCcHHHHHHHHH
Confidence 5555555555542 2 124666555443
No 87
>COG3710 CadC DNA-binding winged-HTH domains [Transcription]
Probab=22.89 E-value=1e+02 Score=25.12 Aligned_cols=71 Identities=8% Similarity=0.085 Sum_probs=49.8
Q ss_pred hCCCCCcHHHHHHHHhhCcCccccccHHHHHH-HhHHccCCcHHHHHHHhHHHHHHhCC----cchhHHHHHhhhhhc
Q 027218 63 IEVSHTDVRILMLAWKMKAEKQGYFTLEEWRR-GLKALRADTVNKLKKALPDLEKEVKR----PTNFQDFYAFAFRYC 135 (226)
Q Consensus 63 Lgv~~ed~~~LvLa~~l~a~~~g~~tr~eF~~-g~~~l~~~sl~~lk~~l~~l~~~l~~----~~~Fk~~Y~ftF~~~ 135 (226)
--|..+-.+.-||..+++ ..-..++|+++++ -|..-.+..-. |-+.|..||+.|.+ ...+..|++==|.|.
T Consensus 28 ~~v~l~~~~~~lL~~L~e-~~geVvsk~eL~~~VW~~~~v~~~~-Ltq~I~~LRr~L~d~~~~~~~I~TvPrrGyk~~ 103 (148)
T COG3710 28 EVVKLGPRELKLLSLLLE-RAGEVVSKDELLDAVWPGRIVTVNT-LTQAISALRRALRDIGDGHRLIATVPRRGYKFT 103 (148)
T ss_pred eEEEecHHHHHHHHHHHh-ccCceecHHHHHHHhCCCceEccCh-HHHHHHHHHHHHhccCCcceEEEEeCCcceEEe
Confidence 445556677788888888 3345799999999 57775543333 99999999999964 344677766555554
No 88
>PF07647 SAM_2: SAM domain (Sterile alpha motif); InterPro: IPR011510 The sterile alpha motif (SAM) domain is a putative protein interaction module present in a wide variety of proteins [] involved in many biological processes. The SAM domain that spreads over around 70 residues is found in diverse eukaryotic organisms []. SAM domains have been shown to homo- and hetero-oligomerise, forming multiple self-association architectures and also binding to various non-SAM domain-containing proteins [], nevertheless with a low affinity constant []. SAM domains also appear to possess the ability to bind RNA []. Smaug, a protein that helps to establish a morphogen gradient in Drosophila embryos by repressing the translation of nanos (nos) mRNA, binds to the 3' untranslated region (UTR) of nos mRNA via two similar hairpin structures. The 3D crystal structure of the Smaug RNA-binding region shows a cluster of positively charged residues on the Smaug-SAM domain, which could be the RNA-binding surface. This electropositive potential is unique among all previously determined SAM-domain structures and is conserved among Smaug-SAM homologs. These results suggest that the SAM domain might have a primary role in RNA binding. Structural analyses show that the SAM domain is arranged in a small five-helix bundle with two large interfaces []. In the case of the SAM domain of EphB2, each of these interfaces is able to form dimers. The presence of these two distinct intermonomers binding surface suggest that SAM could form extended polymeric structures []. This entry represents a second domain related to the SAM domain. ; GO: 0005515 protein binding; PDB: 1B0X_A 1X9X_B 1OW5_A 1V38_A 3BS7_A 3BS5_A 3TAD_A 3TAC_B 2K60_A 2DL0_A ....
Probab=22.87 E-value=1.9e+02 Score=19.30 Aligned_cols=59 Identities=15% Similarity=0.122 Sum_probs=35.6
Q ss_pred CHHHHHHHHHhhCCCCCcHHHHHHHHhhCcCccccccHHHHHHHhHHccCCcHHHHHHHhHHHH
Q 027218 52 DPEGIESLCSDIEVSHTDVRILMLAWKMKAEKQGYFTLEEWRRGLKALRADTVNKLKKALPDLE 115 (226)
Q Consensus 52 ~~dG~~~~~~DLgv~~ed~~~LvLa~~l~a~~~g~~tr~eF~~g~~~l~~~sl~~lk~~l~~l~ 115 (226)
+++.+.+++..+|+ ++=...+.-...-|+...-.+|.+.. .++|+.+....++.+..++
T Consensus 5 ~~~~v~~WL~~~gl-~~y~~~f~~~~i~g~~~L~~l~~~~L----~~lGI~~~~~r~kll~~i~ 63 (66)
T PF07647_consen 5 SPEDVAEWLKSLGL-EQYADNFRENGIDGLEDLLQLTEEDL----KELGITNLGHRRKLLSAIQ 63 (66)
T ss_dssp CHHHHHHHHHHTTC-GGGHHHHHHTTCSHHHHHTTSCHHHH----HHTTTTHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHCCc-HHHHHHHHHcCCcHHHHHhhCCHHHH----HHcCCCCHHHHHHHHHHHH
Confidence 45677788888877 33233333322333355567777755 4788888877666665543
No 89
>PF07864 DUF1651: Protein of unknown function (DUF1651); InterPro: IPR012447 The proteins in this entry have not been characterised.
Probab=22.51 E-value=56 Score=23.49 Aligned_cols=23 Identities=17% Similarity=0.242 Sum_probs=19.5
Q ss_pred ccccccHHhHHHHHhhhhCCCCh
Q 027218 140 KQKSVDIESVCELLGLVLGSQYR 162 (226)
Q Consensus 140 ~qk~L~~d~Ai~~W~llf~~~~~ 162 (226)
+.|.|.++.|++.|+-|+..++.
T Consensus 46 ~rr~l~~~~A~e~W~~L~~~GW~ 68 (75)
T PF07864_consen 46 TRRRLTREEARELWKELQKTGWR 68 (75)
T ss_pred EEEEEEHHHHHHHHHHHHHcCCE
Confidence 35889999999999999987653
No 90
>cd00086 homeodomain Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
Probab=22.45 E-value=1.8e+02 Score=18.61 Aligned_cols=38 Identities=18% Similarity=0.351 Sum_probs=28.0
Q ss_pred hhhHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhhCCCCCcHHH
Q 027218 30 SKEMERIDNLFYSYANKSSGMIDPEGIESLCSDIEVSHTDVRI 72 (226)
Q Consensus 30 ~~~~~~l~~lFd~Y~d~~~~~I~~dG~~~~~~DLgv~~ed~~~ 72 (226)
......|+++|.+- ...+.+-+..+++.+|++...|..
T Consensus 9 ~~~~~~Le~~f~~~-----~~P~~~~~~~la~~~~l~~~qV~~ 46 (59)
T cd00086 9 PEQLEELEKEFEKN-----PYPSREEREELAKELGLTERQVKI 46 (59)
T ss_pred HHHHHHHHHHHHhC-----CCCCHHHHHHHHHHHCcCHHHHHH
Confidence 34567788888872 256778889999999988876543
No 91
>PF04337 DUF480: Protein of unknown function, DUF480; InterPro: IPR007432 This family consists of several proteins of uncharacterised function.; PDB: 3BZ6_A.
Probab=22.16 E-value=87 Score=26.07 Aligned_cols=56 Identities=18% Similarity=0.323 Sum_probs=38.6
Q ss_pred HHHHHhhCCCCCcHHHHHHHHhhCcCccccc-cHHHHHHHhHHccCCcHHHHHHHhHHHHHH
Q 027218 57 ESLCSDIEVSHTDVRILMLAWKMKAEKQGYF-TLEEWRRGLKALRADTVNKLKKALPDLEKE 117 (226)
Q Consensus 57 ~~~~~DLgv~~ed~~~LvLa~~l~a~~~g~~-tr~eF~~g~~~l~~~sl~~lk~~l~~l~~~ 117 (226)
.+||+-|++++....+||+..+=|.++.|++ ||.+ +....+++++....|.+|...
T Consensus 78 Hr~~~~l~l~~~e~All~~LlLRGpQT~GELR~Rs~-----Rl~~F~d~~~Ve~~L~~L~~r 134 (148)
T PF04337_consen 78 HRFCNTLQLSPQELALLCLLLLRGPQTPGELRTRSE-----RLHEFADVAEVEAVLERLAER 134 (148)
T ss_dssp E-HHHHHT--HHHHHHHHHHHHH-SB-HHHHHHHHT-----TTS--SSHHHHHHHHHHHHHT
T ss_pred hhhhhhcCCCHHHHHHHHHHHHcCCCchhHHHhhhc-----cccCCCCHHHHHHHHHHHHhc
Confidence 3689999999999999999999999999886 2322 223468888888888888653
No 92
>cd04766 HTH_HspR Helix-Turn-Helix DNA binding domain of the HspR transcription regulator. Helix-turn-helix (HTH) transcription regulator HspR, N-terminal domain. Heat shock protein regulators (HspR) have been shown to regulate expression of specific regulons in response to high temperature or high osmolarity in Streptomyces and Helicobacter, respectively. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=21.73 E-value=1.1e+02 Score=22.36 Aligned_cols=43 Identities=16% Similarity=0.349 Sum_probs=28.2
Q ss_pred HHHHHHHHHhhCCCCCcHHHHHHHHhhCcCccccccHHHHHHHhHHccCCcHHHHHHHhHHHHHHhC
Q 027218 53 PEGIESLCSDIEVSHTDVRILMLAWKMKAEKQGYFTLEEWRRGLKALRADTVNKLKKALPDLEKEVK 119 (226)
Q Consensus 53 ~dG~~~~~~DLgv~~ed~~~LvLa~~l~a~~~g~~tr~eF~~g~~~l~~~sl~~lk~~l~~l~~~l~ 119 (226)
+.-+..+..|+|++++++..++- =.+.++.|++.|..|++.++
T Consensus 47 l~~i~~L~~d~g~~l~~i~~~l~------------------------l~~~~~~l~~~l~~l~~~~~ 89 (91)
T cd04766 47 LRRIQRLTQELGVNLAGVKRILE------------------------LEEELAELRAELDELRARLR 89 (91)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHH------------------------HHHHHHHHHHHHHHHHHHhc
Confidence 33455566678888887765553 23567777777777777664
No 93
>PLN02228 Phosphoinositide phospholipase C
Probab=21.58 E-value=2.9e+02 Score=27.77 Aligned_cols=65 Identities=17% Similarity=0.285 Sum_probs=43.3
Q ss_pred hHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhhCCCC-CcH-HHHHHHHhhCcC----ccccccHHHHHHHhHH
Q 027218 32 EMERIDNLFYSYANKSSGMIDPEGIESLCSDIEVSH-TDV-RILMLAWKMKAE----KQGYFTLEEWRRGLKA 98 (226)
Q Consensus 32 ~~~~l~~lFd~Y~d~~~~~I~~dG~~~~~~DLgv~~-ed~-~~LvLa~~l~a~----~~g~~tr~eF~~g~~~ 98 (226)
.+..|..+|.+|... +.|+.+++.+|+.+.+=+. .+. .+.-|-..++.. .-|.+|.++|..-+..
T Consensus 22 ~~~ei~~if~~~s~~--~~~t~~~~~~FL~~~Q~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~gF~~yl~s 92 (567)
T PLN02228 22 PPVSIKRLFEAYSRN--GKMSFDELLRFVSEVQGERHAGLDYVQDIFHSVKHHNVFHHHGLVHLNAFYRYLFS 92 (567)
T ss_pred CcHHHHHHHHHhcCC--CccCHHHHHHHHHHhcCCccCCHHHHHHHHHHhccchhhcccCccCHHHHHHHhcC
Confidence 456888999999853 5799999999998775332 221 122333344321 2367999999888754
No 94
>KOG1575 consensus Voltage-gated shaker-like K+ channel, subunit beta/KCNAB [Energy production and conversion]
Probab=21.18 E-value=2.1e+02 Score=26.88 Aligned_cols=54 Identities=20% Similarity=0.299 Sum_probs=41.6
Q ss_pred CHHHHHHHHHhhCCCCCcHHHHHHHHhhCcCc-cccccHHHHHHHhHHccCCcHHHHHHHhHHHHHHhC
Q 027218 52 DPEGIESLCSDIEVSHTDVRILMLAWKMKAEK-QGYFTLEEWRRGLKALRADTVNKLKKALPDLEKEVK 119 (226)
Q Consensus 52 ~~dG~~~~~~DLgv~~ed~~~LvLa~~l~a~~-~g~~tr~eF~~g~~~l~~~sl~~lk~~l~~l~~~l~ 119 (226)
-.+.+.+..+..|. .+..|.|||.+.... +..| .|..+++++++.|..|.-.|.
T Consensus 259 ~~~~~~~iA~k~g~---T~~qlALawv~~~~~v~~pI-----------pG~s~ve~l~eni~Al~~~Lt 313 (336)
T KOG1575|consen 259 ILEALSKIAEKHGC---TVPQLALAWVLSNGKVSSPI-----------PGASKIEQLKENIGALSVKLT 313 (336)
T ss_pred HHHHHHHHHHHcCC---CHHHHHHHHHHHhCCCEEec-----------CCCCcHHHHHHHHhhhhccCC
Confidence 35567788888884 466799999997665 4444 488999999999998888774
No 95
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=20.75 E-value=1.6e+02 Score=23.66 Aligned_cols=39 Identities=15% Similarity=0.311 Sum_probs=27.5
Q ss_pred HHHHHHHHHHhcCCCCCCCCHHHHHHHHHhhCCCCCcHH
Q 027218 33 MERIDNLFYSYANKSSGMIDPEGIESLCSDIEVSHTDVR 71 (226)
Q Consensus 33 ~~~l~~lFd~Y~d~~~~~I~~dG~~~~~~DLgv~~ed~~ 71 (226)
.+-..++|..|-....+.-+.+.+...++.+|++++.+.
T Consensus 103 ~~~~~al~~a~~~~~~~i~~~~vl~~~~~~~Gld~~~~~ 141 (193)
T PF01323_consen 103 DAFADALFRAYFVEGRDISDPDVLAEIAEEAGLDPDEFD 141 (193)
T ss_dssp HHHHHHHHHHHHTSST-TSSHHHHHHHHHHTT--HHHHH
T ss_pred hHHHHHHHHHHHhcccCCCCHHHHHHHHHHcCCcHHHHH
Confidence 355667888888665567777889999999999886543
No 96
>COG3132 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.35 E-value=1.4e+02 Score=25.87 Aligned_cols=55 Identities=20% Similarity=0.357 Sum_probs=43.5
Q ss_pred HHHHH----hhCCCCCcHHHHHHHHhhCcCccccc-cHHHHHHHhHHccCCcHHHHHHHhHHHHH
Q 027218 57 ESLCS----DIEVSHTDVRILMLAWKMKAEKQGYF-TLEEWRRGLKALRADTVNKLKKALPDLEK 116 (226)
Q Consensus 57 ~~~~~----DLgv~~ed~~~LvLa~~l~a~~~g~~-tr~eF~~g~~~l~~~sl~~lk~~l~~l~~ 116 (226)
.+||+ ||.+++..+.++++..+=|+++.|+. ||..= ....+++++.+..|..|-.
T Consensus 81 hrfcnsefgdlkl~~~evali~lLlLRGaQTpgELrtRanR-----m~~Fsdv~e~e~~Le~La~ 140 (215)
T COG3132 81 HRFCNSEFGDLKLSAAEVALITLLLLRGAQTPGELRTRANR-----MYEFSDVAEVEHTLERLAN 140 (215)
T ss_pred HHHhhccccceeechHHHHHHHHHHHcCCCChhHHHHHHHh-----hhccchHHHHHHHHHHHhc
Confidence 47888 99999999999999999999999875 44332 2346788888888887754
Done!