Query 027219
Match_columns 226
No_of_seqs 132 out of 211
Neff 4.1
Searched_HMMs 13730
Date Mon Mar 25 10:44:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027219.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/027219hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1j1ja_ a.118.16.1 (A:) Transl 13.6 23 0.0017 27.5 0.6 31 118-148 6-36 (217)
2 d1q08a_ a.6.1.3 (A:) Transcrip 11.1 1.1E+02 0.0078 20.4 3.6 47 98-144 12-66 (94)
3 d1t5ja_ a.209.1.1 (A:) Hypothe 8.6 1.3E+02 0.0092 23.0 3.5 30 100-129 256-285 (301)
4 d1wgxa_ a.4.1.3 (A:) Hypotheti 6.7 1E+02 0.0073 20.8 1.7 16 134-149 14-29 (73)
5 d2ckaa1 d.76.2.1 (A:2028-2085) 6.5 1.3E+02 0.0092 19.3 2.1 18 193-210 27-44 (58)
6 d2ey4a2 d.265.1.2 (A:8-252) Ps 6.1 40 0.0029 27.4 -0.9 20 207-226 166-185 (245)
7 d2ckca1 d.76.2.1 (A:2563-2622) 6.0 1.2E+02 0.0085 19.6 1.7 20 193-212 25-44 (60)
8 d2apoa2 d.265.1.2 (A:17-246) P 6.0 41 0.003 26.9 -0.9 20 207-226 153-172 (230)
9 d1g94a2 c.1.8.1 (A:1-354) Bact 5.7 2.6E+02 0.019 21.3 4.0 61 4-76 15-80 (354)
10 d1sgva2 d.265.1.2 (A:3-235) Ps 5.6 58 0.0042 25.8 -0.2 20 207-226 167-186 (233)
No 1
>d1j1ja_ a.118.16.1 (A:) Translin {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.63 E-value=23 Score=27.55 Aligned_cols=31 Identities=19% Similarity=0.314 Sum_probs=21.7
Q ss_pred CchHHHHHhHHHHHHHHHHHHHHHHhhcCCh
Q 027219 118 LPNELKEMLIETQEKRNKFQSLYESVHSLST 148 (226)
Q Consensus 118 l~~~lk~~l~~~~~kr~~L~~L~~sI~sls~ 148 (226)
++.+.+..++....+|..+..+-.-|...|.
T Consensus 6 ~F~~~~~~Ld~~~d~RE~lik~sRdI~~~sk 36 (217)
T d1j1ja_ 6 IFVELQGFLAAEQDIREEIRKVVQSLEQTAR 36 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 4566777787777778777777776665554
No 2
>d1q08a_ a.6.1.3 (A:) Transcriptional regulator ZntR {Escherichia coli [TaxId: 562]}
Probab=11.15 E-value=1.1e+02 Score=20.43 Aligned_cols=47 Identities=19% Similarity=0.241 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHhhc---Cch-----HHHHHhHHHHHHHHHHHHHHHHhh
Q 027219 98 SFHSGYNWGLVRGVTSALVC---LPN-----ELKEMLIETQEKRNKFQSLYESVH 144 (226)
Q Consensus 98 Ga~lG~~lG~l~G~lsal~~---l~~-----~lk~~l~~~~~kr~~L~~L~~sI~ 144 (226)
+=.+||.+..|+-++..+.. .+- -+..++....+++..|+.+...++
T Consensus 12 ar~lGFsL~EI~~ll~l~~~~~~~~c~~v~~l~~~kl~~i~~kI~~L~~l~~~L~ 66 (94)
T d1q08a_ 12 ARQLGFSLESIRELLSIRIDPEHHTCQESKGIVQERLQEVEARIAELQSMQRSLQ 66 (94)
T ss_dssp HHHTTCCHHHHHHHHHHHHCGGGCBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCCHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44578888888888876642 221 123334444556666666666444
No 3
>d1t5ja_ a.209.1.1 (A:) Hypothetical protein MJ1187 {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=8.64 E-value=1.3e+02 Score=23.05 Aligned_cols=30 Identities=17% Similarity=0.231 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHhhcCchHHHHHhHHH
Q 027219 100 HSGYNWGLVRGVTSALVCLPNELKEMLIET 129 (226)
Q Consensus 100 ~lG~~lG~l~G~lsal~~l~~~lk~~l~~~ 129 (226)
..|.-+|-+.|...+...+|...++.+...
T Consensus 256 t~aai~Gal~GA~~G~~~IP~~w~~~l~~~ 285 (301)
T d1t5ja_ 256 SLASMYGAMAGAYYGFKNIPKEWIDGLKNK 285 (301)
T ss_dssp HHHHHHHHHHHHHHCGGGSCHHHHHTSSCH
T ss_pred HHHHHHHHHHHHHhChhcCCHHHHHHhcCH
Confidence 367777888888888889999988886543
No 4
>d1wgxa_ a.4.1.3 (A:) Hypothetical protein C14orf106 (KIAA1903) {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.66 E-value=1e+02 Score=20.80 Aligned_cols=16 Identities=25% Similarity=0.260 Sum_probs=13.5
Q ss_pred HHHHHHHHHhhcCChH
Q 027219 134 NKFQSLYESVHSLSTT 149 (226)
Q Consensus 134 ~~L~~L~~sI~sls~~ 149 (226)
+.|+.||+.+.+||.-
T Consensus 14 ~ELqkLh~A~~SlPkh 29 (73)
T d1wgxa_ 14 KELQKLHCAFASLPKH 29 (73)
T ss_dssp HHHHHHHHHHHHSCSS
T ss_pred HHHHHHHHHHHhcCCC
Confidence 5789999999999864
No 5
>d2ckaa1 d.76.2.1 (A:2028-2085) Chromodomain-helicase-dna-binding protein 8, CHD8 {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.52 E-value=1.3e+02 Score=19.30 Aligned_cols=18 Identities=28% Similarity=0.338 Sum_probs=15.9
Q ss_pred hHHHHHHHhhhCCccccc
Q 027219 193 HFGELESIILETPAIQVH 210 (226)
Q Consensus 193 ~~~~l~slL~~~p~i~~~ 210 (226)
..++|+.-|...|.|.|.
T Consensus 27 ~~~~L~~WL~~nP~y~V~ 44 (58)
T d2ckaa1 27 RRAELEMWLQGHPEFAVD 44 (58)
T ss_dssp BHHHHHHHHHHCTTEEEC
T ss_pred CHHHHHHHHHHCCCCEEC
Confidence 467999999999999886
No 6
>d2ey4a2 d.265.1.2 (A:8-252) Pseudouridine synthase II TruB {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=6.12 E-value=40 Score=27.36 Aligned_cols=20 Identities=35% Similarity=0.549 Sum_probs=17.7
Q ss_pred cccccchhhHHHHhhhhcCC
Q 027219 207 IQVHLEVQKYLVSLCNDIGK 226 (226)
Q Consensus 207 i~~~~~~~~~~~~~~~~~~~ 226 (226)
|+|+.+-.-|+-|||.|||+
T Consensus 166 ~~V~CSkGTYIRSLa~DiG~ 185 (245)
T d2ey4a2 166 FRVGVEAGTYIRSLIHHIGL 185 (245)
T ss_dssp EEEEECTTCCHHHHHHHHHH
T ss_pred eeccccCchhhhhHHHHHHH
Confidence 66888899999999999984
No 7
>d2ckca1 d.76.2.1 (A:2563-2622) Chromodomain-helicase-DNA-binding protein 7, CHD7 {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.01 E-value=1.2e+02 Score=19.57 Aligned_cols=20 Identities=15% Similarity=0.182 Sum_probs=16.4
Q ss_pred hHHHHHHHhhhCCccccccc
Q 027219 193 HFGELESIILETPAIQVHLE 212 (226)
Q Consensus 193 ~~~~l~slL~~~p~i~~~~~ 212 (226)
..++|+.-|.+.|.|.|-.+
T Consensus 25 ~~~~L~~WL~~hP~y~Vd~p 44 (60)
T d2ckca1 25 KNKDLVEWLKLHPTYTVDMP 44 (60)
T ss_dssp BHHHHHHHHHHCTTEEESCC
T ss_pred CHHHHHHHHHHCCCcEeecC
Confidence 46899999999999987543
No 8
>d2apoa2 d.265.1.2 (A:17-246) Pseudouridine synthase II TruB {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=6.00 E-value=41 Score=26.95 Aligned_cols=20 Identities=35% Similarity=0.773 Sum_probs=17.1
Q ss_pred cccccchhhHHHHhhhhcCC
Q 027219 207 IQVHLEVQKYLVSLCNDIGK 226 (226)
Q Consensus 207 i~~~~~~~~~~~~~~~~~~~ 226 (226)
|.|+.+-.-|+-|||.|||+
T Consensus 153 ~~V~CSkGTYIRSLa~DlG~ 172 (230)
T d2apoa2 153 FRVKCQSGTYIRKLCEDIGE 172 (230)
T ss_dssp EEEEECTTCCHHHHHHHHHH
T ss_pred EEEEECCCccHHHHHHHHHH
Confidence 55777888899999999984
No 9
>d1g94a2 c.1.8.1 (A:1-354) Bacterial alpha-amylase {Pseudoalteromonas haloplanktis (Alteromonas haloplanktis) [TaxId: 228]}
Probab=5.67 E-value=2.6e+02 Score=21.33 Aligned_cols=61 Identities=8% Similarity=0.098 Sum_probs=35.5
Q ss_pred hhhhHH--hhhhccccccccCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCc--cccchhhHHHHHHHHHHhhhcchH
Q 027219 4 SIAKTL--YSESLQLSDLELDPPSTTNLSGCDGGDLLDGDDGSV-WGGSNEE--FDIETDLDREWQRRRDQFHTIGYR 76 (226)
Q Consensus 4 ~~~~el--~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ddDDv-wgddDee--~~~~~~~~rEw~rl~e~~~k~GYr 76 (226)
.||+|+ |-..|-+.-++|+++..+..+ +.. ||-+--+ .+..--...|++++.+..|+.|-+
T Consensus 15 ~i~~~~~dyl~~lG~tai~l~P~~~~~~~------------~~~y~gY~~~dy~vd~~~Gt~~dfk~LV~~aH~~GI~ 80 (354)
T d1g94a2 15 DVAQECEQYLGPKGYAAVQVSPPNEHITG------------SQWWTRYQPVSYELQSRGGNRAQFIDMVNRCSAAGVD 80 (354)
T ss_dssp HHHHHHHHTHHHHTCCEEEECCCSCBBCS------------SSGGGGGSBSCSCSCBTTBCHHHHHHHHHHHHHTTCE
T ss_pred HHHHHHHHHHHHcCCCEEEeCcCccCCCC------------CCCcccCCCCcceeCCCCCCHHHHHHHHHHHhccCce
Confidence 477887 778888889999865422111 111 1322111 111111257899999999998853
No 10
>d1sgva2 d.265.1.2 (A:3-235) Pseudouridine synthase II TruB {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=5.58 E-value=58 Score=25.79 Aligned_cols=20 Identities=20% Similarity=0.571 Sum_probs=16.7
Q ss_pred cccccchhhHHHHhhhhcCC
Q 027219 207 IQVHLEVQKYLVSLCNDIGK 226 (226)
Q Consensus 207 i~~~~~~~~~~~~~~~~~~~ 226 (226)
|+|+....-|+-|||.|||+
T Consensus 167 ~~v~Cs~GTYIRsLa~DiG~ 186 (233)
T d1sgva2 167 VEIDCSSGTYIRALARDLGD 186 (233)
T ss_dssp EEEEESCCTTHHHHHHHHHH
T ss_pred EEEEECchhHHHHHHHHHHH
Confidence 35777888999999999983
Done!