Query 027222
Match_columns 226
No_of_seqs 198 out of 1424
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 06:46:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027222.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027222hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0546 HSP90 co-chaperone CPR 100.0 3.1E-58 6.7E-63 399.5 14.8 171 55-225 7-179 (372)
2 KOG0880 Peptidyl-prolyl cis-tr 100.0 4.1E-57 8.8E-62 363.0 18.2 172 47-225 30-203 (217)
3 KOG0879 U-snRNP-associated cyc 100.0 2.1E-50 4.6E-55 306.6 13.4 168 55-224 9-177 (177)
4 PTZ00060 cyclophilin; Provisio 100.0 3E-49 6.4E-54 323.8 20.2 169 56-225 15-183 (183)
5 cd01926 cyclophilin_ABH_like c 100.0 3.3E-49 7.3E-54 318.5 19.9 164 57-222 1-164 (164)
6 PTZ00221 cyclophilin; Provisio 100.0 1.3E-47 2.8E-52 325.0 20.3 168 54-225 50-220 (249)
7 PLN03149 peptidyl-prolyl isome 100.0 1.8E-47 3.8E-52 313.9 18.7 167 56-224 18-186 (186)
8 KOG0111 Cyclophilin-type pepti 100.0 1.6E-47 3.5E-52 312.5 11.0 163 56-225 136-298 (298)
9 COG0652 PpiB Peptidyl-prolyl c 100.0 8.4E-46 1.8E-50 294.1 15.3 144 68-224 6-157 (158)
10 KOG0881 Cyclophilin type pepti 100.0 3.3E-46 7.1E-51 280.6 8.5 151 57-223 10-162 (164)
11 cd01923 cyclophilin_RING cyclo 100.0 1.9E-44 4.2E-49 289.3 18.4 152 60-225 1-154 (159)
12 cd01928 Cyclophilin_PPIL3_like 100.0 2.6E-44 5.7E-49 286.8 17.6 143 69-222 8-152 (153)
13 cd01927 cyclophilin_WD40 cyclo 100.0 2.8E-44 6.2E-49 285.2 16.9 142 68-220 4-147 (148)
14 cd01922 cyclophilin_SpCYP2_lik 100.0 3.8E-44 8.3E-49 283.8 16.5 142 68-220 4-146 (146)
15 cd01921 cyclophilin_RRM cyclop 100.0 2.1E-43 4.5E-48 285.3 17.6 147 68-225 4-160 (166)
16 PRK10903 peptidyl-prolyl cis-t 100.0 1.4E-42 3.1E-47 285.6 20.1 152 56-225 28-190 (190)
17 cd01925 cyclophilin_CeCYP16-li 100.0 1.4E-41 3E-46 275.8 18.3 155 55-225 4-161 (171)
18 KOG0883 Cyclophilin type, U bo 100.0 1E-41 2.2E-46 297.3 12.1 159 52-224 271-431 (518)
19 PRK10791 peptidyl-prolyl cis-t 100.0 2.6E-40 5.6E-45 266.5 17.8 143 69-224 7-163 (164)
20 KOG0882 Cyclophilin-related pe 100.0 3.6E-41 7.7E-46 298.7 11.0 145 67-222 410-556 (558)
21 cd01920 cyclophilin_EcCYP_like 100.0 9.4E-40 2E-44 261.2 16.3 140 68-220 4-154 (155)
22 KOG0865 Cyclophilin type pepti 100.0 1.2E-40 2.5E-45 266.6 9.8 163 55-224 2-167 (167)
23 PF00160 Pro_isomerase: Cyclop 100.0 3.3E-39 7.2E-44 257.4 17.1 151 60-223 1-155 (155)
24 KOG0884 Similar to cyclophilin 100.0 2.1E-39 4.6E-44 242.5 11.6 142 69-221 8-152 (161)
25 cd00317 cyclophilin cyclophili 100.0 2.4E-38 5.3E-43 250.1 16.4 140 69-220 5-146 (146)
26 cd01924 cyclophilin_TLP40_like 100.0 2E-37 4.3E-42 252.3 15.3 128 68-205 4-165 (176)
27 KOG0885 Peptidyl-prolyl cis-tr 100.0 1.9E-35 4.2E-40 256.9 11.8 156 53-224 9-167 (439)
28 KOG0415 Predicted peptidyl pro 100.0 1.4E-32 3.1E-37 237.7 13.7 147 68-225 7-163 (479)
29 KOG0882 Cyclophilin-related pe 98.2 4.9E-06 1.1E-10 75.5 7.4 139 72-221 113-259 (558)
30 TIGR03268 methan_mark_3 putati 96.8 0.0052 1.1E-07 57.0 8.3 103 71-204 201-303 (503)
31 PRK00969 hypothetical protein; 96.8 0.0047 1E-07 57.4 7.7 103 71-204 204-306 (508)
32 TIGR03268 methan_mark_3 putati 96.6 0.017 3.7E-07 53.7 9.8 114 72-205 376-496 (503)
33 COG4070 Predicted peptidyl-pro 96.3 0.013 2.8E-07 52.9 7.0 102 70-204 202-305 (512)
34 PRK00969 hypothetical protein; 96.1 0.044 9.6E-07 51.1 9.6 113 72-205 379-498 (508)
35 COG4070 Predicted peptidyl-pro 95.7 0.029 6.3E-07 50.7 6.4 22 72-93 377-398 (512)
36 PF12903 DUF3830: Protein of u 94.5 0.36 7.7E-06 38.2 8.5 108 72-204 9-130 (147)
37 COG2164 Uncharacterized conser 81.1 1.1 2.4E-05 33.2 1.9 100 70-204 12-117 (126)
38 PF04126 Cyclophil_like: Cyclo 74.6 20 0.00043 27.2 7.2 46 154-204 61-113 (120)
39 PF15240 Pro-rich: Proline-ric 47.9 16 0.00035 29.8 2.5 16 13-28 2-17 (179)
40 PF05913 DUF871: Bacterial pro 44.2 12 0.00027 33.8 1.4 50 154-204 299-349 (357)
41 PF08415 NRPS: Nonribosomal pe 37.0 36 0.00077 22.1 2.4 27 193-220 4-30 (58)
42 PF11314 DUF3117: Protein of u 36.5 27 0.00058 22.2 1.6 27 57-85 17-43 (51)
43 PRK07718 fliL flagellar basal 30.7 2.2E+02 0.0048 22.0 6.4 9 72-80 68-76 (142)
44 COG1999 Uncharacterized protei 30.7 3.1E+02 0.0067 22.6 7.7 25 70-94 66-95 (207)
45 PF10731 Anophelin: Thrombin i 29.0 66 0.0014 21.5 2.6 16 12-27 6-21 (65)
46 PF12273 RCR: Chitin synthesis 26.8 45 0.00097 25.4 1.8 9 107-115 77-86 (130)
47 PF10694 DUF2500: Protein of u 25.4 73 0.0016 23.5 2.7 46 57-117 64-109 (110)
48 COG0219 CspR Predicted rRNA me 25.4 1E+02 0.0023 24.6 3.6 33 73-118 3-35 (155)
49 KOG3953 SOCS box protein SSB-1 23.6 1.4E+02 0.0031 25.5 4.3 38 58-95 70-108 (242)
50 COG5510 Predicted small secret 23.1 1.4E+02 0.003 18.6 3.0 16 9-24 7-22 (44)
51 PF08139 LPAM_1: Prokaryotic m 22.0 1.4E+02 0.0029 16.3 2.6 18 7-24 6-23 (25)
52 PRK07021 fliL flagellar basal 21.1 4.2E+02 0.009 20.9 6.5 23 72-94 84-114 (162)
53 PF15284 PAGK: Phage-encoded v 20.1 2.1E+02 0.0045 19.1 3.7 15 7-21 6-20 (61)
No 1
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.1e-58 Score=399.53 Aligned_cols=171 Identities=64% Similarity=1.082 Sum_probs=164.2
Q ss_pred cCcEEEEEEEECCEEeeEEEEEEecCCCchhHHHHHHhhcCCCCcc-cCCCCccccCCEEEEeecCceEeeCCCCCCCCC
Q 027222 55 VTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIG-KSGKPLYYKGSSFHRIIPSFMIQGGDFTLGDGR 133 (226)
Q Consensus 55 ~~~~v~~~i~~~~~~~G~IvieL~~~~aP~~v~nF~~L~~g~~g~~-~~~~~~~Y~g~~f~Rv~~~~~iq~Gd~~~~~~~ 133 (226)
.+++|||||+|++.+.|||+||||.|.||+||+||+.||+|++|.+ ..|+.+.|+|+.||||+++|||||||+..++|+
T Consensus 7 ~~pr~ffDISI~ge~~GRIvfeLf~dv~PKTaENFraLCtGE~G~~~~~gk~L~YKG~~FHRViK~FMiQgGDfs~gnGt 86 (372)
T KOG0546|consen 7 TNPRVFFDISIGGEPAGRIVFELFNDVVPKTAENFRALCTGEKGGGLTTGKPLHYKGSRFHRVIKNFMIQGGDFSEGNGT 86 (372)
T ss_pred CCceEEEEEEeCCcccceEEEEeecccCchhHHHHHHHhccccCCCCCCCCeeeecCchhheeeecceeeccccccCCCC
Confidence 3689999999999999999999999999999999999999999853 578999999999999999999999999999999
Q ss_pred CCccccCCcccccccccccCCceEEEeeecCCCCCcceeEEEccCCCCCCCCccEEEEEEcCHHHHHHHHhCCCCC-CCc
Q 027222 134 GGESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQS-GEP 212 (226)
Q Consensus 134 ~~~~~~~~~~~~e~~~~~h~~~G~l~~~~~~~~~~~sqF~I~l~~~~~Ld~~~~VFGrVi~G~~vl~~I~~~~~~~-~~P 212 (226)
||++|||..|.||++.++|+++++|||||.|||+||||||||+.++|||||+|+|||+||+|++|++.|++..++. .+|
T Consensus 87 GGeSIYG~~FdDEnF~lKHdrpflLSMAN~GpNTNgSQFFITT~p~PHLdGkHVVFGqVI~G~~VVr~IEn~~~d~~skP 166 (372)
T KOG0546|consen 87 GGESIYGEKFDDENFELKHDRPFLLSMANRGPNTNGSQFFITTVPTPHLDGKHVVFGQVIKGKEVVREIENLETDEESKP 166 (372)
T ss_pred CcccccccccccccceeccCcchhhhhhcCCCCCCCcceEEeCCCCCCcCCceeEEeeEeechhHHHHHhccccccCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999977554 589
Q ss_pred ccceEEeeeeeec
Q 027222 213 KSKVVISNSGEMA 225 (226)
Q Consensus 213 ~~~i~I~~cg~l~ 225 (226)
..+|.|.+||+|.
T Consensus 167 ~~dV~I~dCGel~ 179 (372)
T KOG0546|consen 167 LADVVISDCGELV 179 (372)
T ss_pred ccceEeccccccc
Confidence 9999999999996
No 2
>KOG0880 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.1e-57 Score=363.05 Aligned_cols=172 Identities=73% Similarity=1.189 Sum_probs=162.7
Q ss_pred CccccccccCcEEEEEEEECCEEeeEEEEEEecCCCchhHHHHHHhhc-CCCCcccCCCCccccCCEEEEeecCceEeeC
Q 027222 47 NSREELEKVTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCT-GEKGIGKSGKPLYYKGSSFHRIIPSFMIQGG 125 (226)
Q Consensus 47 ~~~~~~~~~~~~v~~~i~~~~~~~G~IvieL~~~~aP~~v~nF~~L~~-g~~g~~~~~~~~~Y~g~~f~Rv~~~~~iq~G 125 (226)
..+++.|+++++|||||.+++.+.|||+|+||++.+|+||+||.+||+ +.+|+ .|.|++||||+||||||||
T Consensus 30 ~~~~~~p~vT~kV~fdi~~g~~~~grIvigLfG~~vPKTV~NF~~l~~~~~~~~-------gY~gS~FhRVi~nfmIQGG 102 (217)
T KOG0880|consen 30 KKYEPGPKVTHKVYFDIEIGGEPVGRIVIGLFGKVVPKTVENFRALATSGEKGY-------GYKGSKFHRVIPNFMIQGG 102 (217)
T ss_pred cccCCCCcceeEEEEEEEECCEeccEEEEEeccccchHHHHHHHHHHccCCCCc-------ccCCceeeeeecCceeecC
Confidence 345667889999999999999999999999999999999999999998 66555 4999999999999999999
Q ss_pred CCCCCCCCCCccccCCcccccccccccCCceEEEeeecCCCCCcceeEEEccCCCCCCCCccEEEEEEcCHHHHHHHHhC
Q 027222 126 DFTLGDGRGGESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAE 205 (226)
Q Consensus 126 d~~~~~~~~~~~~~~~~~~~e~~~~~h~~~G~l~~~~~~~~~~~sqF~I~l~~~~~Ld~~~~VFGrVi~G~~vl~~I~~~ 205 (226)
|++.++++|+.++||++|+|||+.++|+++|.||||+.+||+|||||||++...||||++|+|||+|++|||+|.+|+..
T Consensus 103 d~t~g~gtGg~SIyG~~F~DENf~LkH~rpG~lSMAn~GpDtNGsQFfItT~~t~wLDGkhVVFGqVl~Gmdvv~~Ie~~ 182 (217)
T KOG0880|consen 103 DFTKGDGTGGKSIYGEKFPDENFKLKHDRPGRLSMANAGPDTNGSQFFITTVKTPWLDGKHVVFGQVLEGMDVVRKIENV 182 (217)
T ss_pred ccccCCCCCCeEeecCCCCCccceeecCCCceEeeeccCCCCCCceEEEEecCCccccCceeEEeeehhhHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred C-CCCCCcccceEEeeeeeec
Q 027222 206 G-RQSGEPKSKVVISNSGEMA 225 (226)
Q Consensus 206 ~-~~~~~P~~~i~I~~cg~l~ 225 (226)
. +++++|.++++|.+||+|.
T Consensus 183 ~TD~~dkP~e~v~I~~~g~l~ 203 (217)
T KOG0880|consen 183 KTDERDKPLEDVVIANCGELP 203 (217)
T ss_pred ccCCCCCccccEEEeecCccc
Confidence 6 5578999999999999985
No 3
>KOG0879 consensus U-snRNP-associated cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.1e-50 Score=306.57 Aligned_cols=168 Identities=58% Similarity=1.011 Sum_probs=159.6
Q ss_pred cCcEEEEEEEECCEEeeEEEEEEecCCCchhHHHHHHhhcCCCCcccCCCCccccCCEEEEeecCceEeeCCCCCCCCCC
Q 027222 55 VTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFTLGDGRG 134 (226)
Q Consensus 55 ~~~~v~~~i~~~~~~~G~IvieL~~~~aP~~v~nF~~L~~g~~g~~~~~~~~~Y~g~~f~Rv~~~~~iq~Gd~~~~~~~~ 134 (226)
.++-||||+++++.+.|||.||||.|.+|+|++||++.|+|+-- +.|+..-|+++.||||+++|||||||+.+++|+|
T Consensus 9 ~nPvVF~dv~igg~~~GrikieLFadivPkTAENFRQFCTGE~r--~~g~PiGYK~~tFHRvIkdFMiQgGDFv~gDGtG 86 (177)
T KOG0879|consen 9 NNPVVFFDVAIGGRPIGRIKIELFADIVPKTAENFRQFCTGEYR--KDGVPIGYKNSTFHRVIKDFMIQGGDFVNGDGTG 86 (177)
T ss_pred CCCeEEEEEeeCCEEcceEEEEEeeccChhhHHHHHhhcccccc--cCCccccccccchHHHhhhheeccCceecCCCce
Confidence 47899999999999999999999999999999999999998742 4456778999999999999999999999999999
Q ss_pred CccccCCcccccccccccCCceEEEeeecCCCCCcceeEEEccCCCCCCCCccEEEEEEcCHHHHHHHHhCCC-CCCCcc
Q 027222 135 GESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGR-QSGEPK 213 (226)
Q Consensus 135 ~~~~~~~~~~~e~~~~~h~~~G~l~~~~~~~~~~~sqF~I~l~~~~~Ld~~~~VFGrVi~G~~vl~~I~~~~~-~~~~P~ 213 (226)
..++|+.+|+|||+.++|+++|+|||++++++++|.|||||..++.+||++|+|||||++|+.++++|++.++ .+.+|+
T Consensus 87 ~~sIy~~~F~DENFtlkH~~PGlLSMANsG~~tNGCQFFITcakcdfLD~KHVVFGrvldGlli~rkIEnvp~G~NnkPK 166 (177)
T KOG0879|consen 87 VASIYGSTFPDENFTLKHDGPGLLSMANSGKDTNGCQFFITCAKCDFLDGKHVVFGRVLDGLLIMRKIENVPTGPNNKPK 166 (177)
T ss_pred EEEEcCCCCCCcceeeecCCCceeeccccCCCCCCceEEEEecccccccCceEEEeeeehhhhhhhhhhcCCCCCCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999885 678999
Q ss_pred cceEEeeeeee
Q 027222 214 SKVVISNSGEM 224 (226)
Q Consensus 214 ~~i~I~~cg~l 224 (226)
-+|.|..||++
T Consensus 167 l~v~i~qCGem 177 (177)
T KOG0879|consen 167 LPVVIVQCGEM 177 (177)
T ss_pred CcEEEeecccC
Confidence 99999999984
No 4
>PTZ00060 cyclophilin; Provisional
Probab=100.00 E-value=3e-49 Score=323.81 Aligned_cols=169 Identities=65% Similarity=1.083 Sum_probs=156.8
Q ss_pred CcEEEEEEEECCEEeeEEEEEEecCCCchhHHHHHHhhcCCCCcccCCCCccccCCEEEEeecCceEeeCCCCCCCCCCC
Q 027222 56 THKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFTLGDGRGG 135 (226)
Q Consensus 56 ~~~v~~~i~~~~~~~G~IvieL~~~~aP~~v~nF~~L~~g~~g~~~~~~~~~Y~g~~f~Rv~~~~~iq~Gd~~~~~~~~~ 135 (226)
++++|||+.+++++.|+|+||||.+.||++|+||++||++...+ ..|+.++|+|+.||||+|+|+||+||+..+++.++
T Consensus 15 ~~~v~~di~i~~~~~G~ivIeL~~d~aP~t~~nF~~L~~g~~~~-~~g~~~~Y~~~~fhRvi~~~~iqgGd~~~~~g~~g 93 (183)
T PTZ00060 15 RPKVFFDISIDNAPAGRIVFELFSDVTPKTAENFRALCIGDKVG-SSGKNLHYKGSIFHRIIPQFMCQGGDITNHNGTGG 93 (183)
T ss_pred CCEEEEEEEECCEeCceEEEEEcCCCCcHHHHHHHHHhcCCccc-ccCcccccCCeEEEEEcCCCeEEeCCccCCCCCCC
Confidence 57899999999999999999999999999999999999876432 23466799999999999999999999887778888
Q ss_pred ccccCCcccccccccccCCceEEEeeecCCCCCcceeEEEccCCCCCCCCccEEEEEEcCHHHHHHHHhCCCCCCCcccc
Q 027222 136 ESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGEPKSK 215 (226)
Q Consensus 136 ~~~~~~~~~~e~~~~~h~~~G~l~~~~~~~~~~~sqF~I~l~~~~~Ld~~~~VFGrVi~G~~vl~~I~~~~~~~~~P~~~ 215 (226)
.++|+..+++|...++|+++|+|+|+++++++++|||||++.++|+||++|+|||||++|||||++|++.++++++|+++
T Consensus 94 ~~~~g~~~~~e~~~~~h~~~G~lsma~~g~~~~~sqFfIt~~~~~~Ldg~~tvFG~Vi~G~dvl~~I~~~~~~~~~P~~~ 173 (183)
T PTZ00060 94 ESIYGRKFTDENFKLKHDQPGLLSMANAGPNTNGSQFFITTVPCPWLDGKHVVFGKVIEGMEVVRAMEKEGTQSGYPKKP 173 (183)
T ss_pred CcccccccCCccccccCCCCCEEEeccCCCCCCcceEEEEeCCCcccCCCccEEEEEEccHHHHHHHHccCCCCCCCcCC
Confidence 88999889999889999999999999999999999999999999999999999999999999999999988888999999
Q ss_pred eEEeeeeeec
Q 027222 216 VVISNSGEMA 225 (226)
Q Consensus 216 i~I~~cg~l~ 225 (226)
|+|.+||+|.
T Consensus 174 v~I~~cg~~~ 183 (183)
T PTZ00060 174 VVVTDCGELQ 183 (183)
T ss_pred eEEEEeEEcC
Confidence 9999999973
No 5
>cd01926 cyclophilin_ABH_like cyclophilin_ABH_like: Cyclophilin A, B and H-like cyclophilin-type peptidylprolyl cis- trans isomerase (PPIase) domain. This family represents the archetypal cystolic cyclophilin similar to human cyclophilins A, B and H. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. These enzymes have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. As cyclophilins, Human hCyP-A, human cyclophilin-B (hCyP-19), S. cerevisiae Cpr1 and C. elegans Cyp-3, are inhibited by the immunosuppressive drug cyclopsporin A (CsA). CsA binds to the PPIase active site. Cyp-3. S. cerevisiae Cpr1 interacts with the Rpd3 - Sin3 complex and in addition is a component of the Set3 complex. S. cerevisiae Cpr1 has also been shown to have a role in Zpr1p nuclear transport. Human cyclophilin H associates with the [U4/U6.U5] tri-snRNP particles of the spl
Probab=100.00 E-value=3.3e-49 Score=318.51 Aligned_cols=164 Identities=74% Similarity=1.259 Sum_probs=152.7
Q ss_pred cEEEEEEEECCEEeeEEEEEEecCCCchhHHHHHHhhcCCCCcccCCCCccccCCEEEEeecCceEeeCCCCCCCCCCCc
Q 027222 57 HKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFTLGDGRGGE 136 (226)
Q Consensus 57 ~~v~~~i~~~~~~~G~IvieL~~~~aP~~v~nF~~L~~g~~g~~~~~~~~~Y~g~~f~Rv~~~~~iq~Gd~~~~~~~~~~ 136 (226)
|++|||+.+++++.|+|+||||++.||++|+||++||++.+|.++ +..+|+++.||||+|+|+||+||+..+++.++.
T Consensus 1 p~v~~di~i~~~~~G~i~ieL~~~~aP~~~~nF~~L~~~~~g~~~--~~~~Y~~~~f~Rv~~~~~iq~Gd~~~~~g~~~~ 78 (164)
T cd01926 1 PKVFFDITIGGEPAGRIVMELFADVVPKTAENFRALCTGEKGKGG--KPFGYKGSTFHRVIPDFMIQGGDFTRGNGTGGK 78 (164)
T ss_pred CEEEEEEeECCeeceeEEEEEeCCCCCHHHHHHHHHhcccCCCcc--cccccCCCEEEEEeCCcEEEcCCccCCCCCCCC
Confidence 579999999999999999999999999999999999987655433 445899999999999999999998877788888
Q ss_pred cccCCcccccccccccCCceEEEeeecCCCCCcceeEEEccCCCCCCCCccEEEEEEcCHHHHHHHHhCCCCCCCcccce
Q 027222 137 SIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGEPKSKV 216 (226)
Q Consensus 137 ~~~~~~~~~e~~~~~h~~~G~l~~~~~~~~~~~sqF~I~l~~~~~Ld~~~~VFGrVi~G~~vl~~I~~~~~~~~~P~~~i 216 (226)
++++..+++|+..++|+++|+|+|++.++++++|||||++++.|+||++|+|||||++|||||++|++.++++++|+++|
T Consensus 79 ~~~g~~~~~e~~~~~h~~~G~lsma~~~~~~~~sqFfIt~~~~~~Ld~~~tvFG~V~~G~dvl~~i~~~~~~~~~P~~~i 158 (164)
T cd01926 79 SIYGEKFPDENFKLKHTGPGLLSMANAGPNTNGSQFFITTVKTPWLDGKHVVFGKVVEGMDVVKKIENVGSGNGKPKKKV 158 (164)
T ss_pred cccCCccCCCCccccCCCccEEEeeECCCCCcccEEEEEeCCCCccCCcccEEEEEEEcHHHHHHHHcCCCCCCCCcCCe
Confidence 89999999998889999999999999999999999999999999999999999999999999999999887788999999
Q ss_pred EEeeee
Q 027222 217 VISNSG 222 (226)
Q Consensus 217 ~I~~cg 222 (226)
+|.+||
T Consensus 159 ~I~~cG 164 (164)
T cd01926 159 VIADCG 164 (164)
T ss_pred EEEECC
Confidence 999998
No 6
>PTZ00221 cyclophilin; Provisional
Probab=100.00 E-value=1.3e-47 Score=325.03 Aligned_cols=168 Identities=36% Similarity=0.550 Sum_probs=152.4
Q ss_pred ccCcEEEEEEEECCEEeeEEEEEEecCCCchhHHHHHHhhcCCCCccc-CCCCccccCCEEEEeecC-ceEeeCCCCCCC
Q 027222 54 KVTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGK-SGKPLYYKGSSFHRIIPS-FMIQGGDFTLGD 131 (226)
Q Consensus 54 ~~~~~v~~~i~~~~~~~G~IvieL~~~~aP~~v~nF~~L~~g~~g~~~-~~~~~~Y~g~~f~Rv~~~-~~iq~Gd~~~~~ 131 (226)
..+++||||+++++.+.|+|+||||.+.||+||+||++||+|+++.+. .|.+.+|+|+.||||+++ |+||+||+..
T Consensus 50 ~~~~rVfldisig~~~~GrIvIELf~d~aP~T~eNF~~Lc~g~~g~~~~~g~k~~Y~gt~FhRVi~~~f~iqgGD~~~-- 127 (249)
T PTZ00221 50 QNSCRAFLDISIGDVLAGRLVFELFEDVVPETVENFRALITGSCGIDTNTGVKLDYLYTPVHHVDRNNNIIVLGELDS-- 127 (249)
T ss_pred CCCCEEEEEEeeCCeecceEEEEEeCCCCcHHHHHHHHHhhcccccccccCcccccCCCEEEEEeCCCCEEEeCCCCC--
Confidence 347899999999999999999999999999999999999998876543 345667999999999985 8999999863
Q ss_pred CCCCccccCCcccccccccccCCceEEEeeecCCCCCcceeEEEccCCCCCCCCccEEEEEEcCHHHHHHHHhCC-CCCC
Q 027222 132 GRGGESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEG-RQSG 210 (226)
Q Consensus 132 ~~~~~~~~~~~~~~e~~~~~h~~~G~l~~~~~~~~~~~sqF~I~l~~~~~Ld~~~~VFGrVi~G~~vl~~I~~~~-~~~~ 210 (226)
.+.+++|..|++|++.++|+++|+|+|+++++++++|||||++.++|+||++|+|||||++|||+|++|++.+ ++++
T Consensus 128 --~g~s~~G~~f~dE~~~~~h~~~G~LsMan~GpntngSQFfITl~~~p~LDgk~vVFGrVveGmdVv~kIe~v~~d~~g 205 (249)
T PTZ00221 128 --FNVSSTGTPIADEGYRHRHTERGLLTMISEGPHTSGSVFGITLGPSPSLDFKQVVFGKAVDDLSLLEKLESLPLDDVG 205 (249)
T ss_pred --CCccCCCCcccCccccccCCCCCEEEeCcCCCCCccceEEEECCCCCccCCCceEEEEEEeCHHHHHHHHcCCcCCCC
Confidence 2346678889999999999999999999999999999999999999999999999999999999999999887 4578
Q ss_pred CcccceEEeeeeeec
Q 027222 211 EPKSKVVISNSGEMA 225 (226)
Q Consensus 211 ~P~~~i~I~~cg~l~ 225 (226)
+|.++|+|.+||+|+
T Consensus 206 rP~~~V~I~~Cgvl~ 220 (249)
T PTZ00221 206 RPLLPVTVSFCGALT 220 (249)
T ss_pred CCCCCeEEEECeEec
Confidence 999999999999985
No 7
>PLN03149 peptidyl-prolyl isomerase H (cyclophilin H); Provisional
Probab=100.00 E-value=1.8e-47 Score=313.86 Aligned_cols=167 Identities=59% Similarity=1.006 Sum_probs=152.1
Q ss_pred CcEEEEEEEECCEEeeEEEEEEecCCCchhHHHHHHhhcCCCCcccCCCCccccCCEEEEeecCceEeeCCCCCCCCCCC
Q 027222 56 THKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFTLGDGRGG 135 (226)
Q Consensus 56 ~~~v~~~i~~~~~~~G~IvieL~~~~aP~~v~nF~~L~~g~~g~~~~~~~~~Y~g~~f~Rv~~~~~iq~Gd~~~~~~~~~ 135 (226)
++++|||+.+++++.|||+||||.+.||++|+||++||+++.. ..|....|+++.||||+++|+||+||+..+++.++
T Consensus 18 ~~~v~~di~~~~~~~G~i~ieL~~~~aP~t~~NF~~Lc~g~~~--~~g~~~~Y~~~~fhrVi~~f~iqgGd~~~~~g~g~ 95 (186)
T PLN03149 18 NPVVFFDVTIGGIPAGRIKMELFADIAPKTAENFRQFCTGEFR--KAGLPQGYKGCQFHRVIKDFMIQGGDFLKGDGTGC 95 (186)
T ss_pred CCEEEEEEeeCCcccccEEEEEcCCCCcHHHHHHHHHHhhhcc--ccCcccccCCcEEEEEcCCcEEEcCCcccCCCCCc
Confidence 4689999999999999999999999999999999999987532 11222349999999999999999999887888888
Q ss_pred ccccCCcccccccccccCCceEEEeeecCCCCCcceeEEEccCCCCCCCCccEEEEEE-cCHHHHHHHHhCCC-CCCCcc
Q 027222 136 ESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVL-SGMDVVRKIEAEGR-QSGEPK 213 (226)
Q Consensus 136 ~~~~~~~~~~e~~~~~h~~~G~l~~~~~~~~~~~sqF~I~l~~~~~Ld~~~~VFGrVi-~G~~vl~~I~~~~~-~~~~P~ 213 (226)
.++|+..+++|++..+|+++|+|+|+++++++++|||||++.++|+||++|+|||||+ +|||+|++|++.++ ++++|+
T Consensus 96 ~~~~g~~f~~e~~~~~h~~~G~lsma~~g~~s~~sqFfIt~~~~p~Ldg~~tVFG~Vi~eG~dvl~~I~~~~~~~~~~P~ 175 (186)
T PLN03149 96 VSIYGSKFEDENFIAKHTGPGLLSMANSGPNTNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPK 175 (186)
T ss_pred ccccCCccCCcccccccCCCCEEEEeeCCCCCcccEEEEECCCCCccCCCceEEEEEEECcHHHHHHHHcCCCCCCCCCc
Confidence 8999999999988899999999999999999999999999999999999999999999 89999999999876 678999
Q ss_pred cceEEeeeeee
Q 027222 214 SKVVISNSGEM 224 (226)
Q Consensus 214 ~~i~I~~cg~l 224 (226)
++|+|.+||++
T Consensus 176 ~~i~I~~cG~~ 186 (186)
T PLN03149 176 LACVISECGEM 186 (186)
T ss_pred CCeEEEeCEeC
Confidence 99999999985
No 8
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-47 Score=312.52 Aligned_cols=163 Identities=63% Similarity=1.078 Sum_probs=159.4
Q ss_pred CcEEEEEEEECCEEeeEEEEEEecCCCchhHHHHHHhhcCCCCcccCCCCccccCCEEEEeecCceEeeCCCCCCCCCCC
Q 027222 56 THKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFTLGDGRGG 135 (226)
Q Consensus 56 ~~~v~~~i~~~~~~~G~IvieL~~~~aP~~v~nF~~L~~g~~g~~~~~~~~~Y~g~~f~Rv~~~~~iq~Gd~~~~~~~~~ 135 (226)
++.+|+++.+.....|||+++|..|..|+|++||..||++++|.| |+|++||||+|.||+||||+++++|+|+
T Consensus 136 ~pqv~~~ikig~~~~Gri~~~lrtdv~Pmtaenfr~Lctge~gfg-------ykgssfhriip~fmcqggdftn~ngtgg 208 (298)
T KOG0111|consen 136 NPQVYHDIKIGEDRAGRIVMLLRTDVVPMTAENFRCLCTGEAGFG-------YKGSSFHRIIPKFMCQGGDFTNGNGTGG 208 (298)
T ss_pred ChHhhhheeecccccceEEEeecccCChhhhhhhhhhccccCccC-------ccccchhhhhhhhhccCCccccCCCCCC
Confidence 678999999999999999999999999999999999999998875 9999999999999999999999999999
Q ss_pred ccccCCcccccccccccCCceEEEeeecCCCCCcceeEEEccCCCCCCCCccEEEEEEcCHHHHHHHHhCCCCCCCcccc
Q 027222 136 ESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGEPKSK 215 (226)
Q Consensus 136 ~~~~~~~~~~e~~~~~h~~~G~l~~~~~~~~~~~sqF~I~l~~~~~Ld~~~~VFGrVi~G~~vl~~I~~~~~~~~~P~~~ 215 (226)
.++||.+|.|||+.++|..+|+|||+++++|++||||||++....|||++|+|||.|++||+||+++++.++++++|.+.
T Consensus 209 ksiygkkfddenf~lkht~pgtlsmansgantngsqffict~ktdwldgkhvvfghv~eg~~vvrq~e~qgsksgkp~qk 288 (298)
T KOG0111|consen 209 KSIYGKKFDDENFTLKHTMPGTLSMANSGANTNGSQFFICTEKTDWLDGKHVVFGHVVEGMNVVRQVEQQGSKSGKPQQK 288 (298)
T ss_pred cccccccccccceeeecCCCceeeccccCCCCCCceEEEEecccccccCceeEEeeecchHHHHHHHHhccCCCCCcceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEeeeeeec
Q 027222 216 VVISNSGEMA 225 (226)
Q Consensus 216 i~I~~cg~l~ 225 (226)
|+|.+||+++
T Consensus 289 v~i~~cge~~ 298 (298)
T KOG0111|consen 289 VKIVECGEIE 298 (298)
T ss_pred EEEEeccccC
Confidence 9999999984
No 9
>COG0652 PpiB Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.4e-46 Score=294.09 Aligned_cols=144 Identities=49% Similarity=0.783 Sum_probs=128.8
Q ss_pred EEeeEEEEEEecCCCchhHHHHHHhhcCCCCcccCCCCccccCCEEEEeecCceEeeCCCCCCCCCCCccccCCcccccc
Q 027222 68 KPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFTLGDGRGGESIFGESFADEN 147 (226)
Q Consensus 68 ~~~G~IvieL~~~~aP~~v~nF~~L~~g~~g~~~~~~~~~Y~g~~f~Rv~~~~~iq~Gd~~~~~~~~~~~~~~~~~~~e~ 147 (226)
|..|+|+||||++.||+||+||++||+ .+||+|+.||||+++|||||||+..+++.+++. .++++|+
T Consensus 6 t~~G~I~ieL~~~~aP~Tv~NF~~l~~----------~g~Ydg~~FHRVi~~FmiQgGd~~~~~g~gg~~---~~f~~E~ 72 (158)
T COG0652 6 TNKGDITIELYPDKAPKTVANFLQLVK----------EGFYDGTIFHRVIPGFMIQGGDPTGGDGTGGPG---PPFKDEN 72 (158)
T ss_pred ccCCCEEEEECCCcCcHHHHHHHHHHH----------cCCCCCceEEEeecCceeecCCCCCCCCCCCCC---CCCcccc
Confidence 449999999999999999999999995 339999999999999999999999776777774 7899998
Q ss_pred cccccCC--ceEEEeeecC-CCCCcceeEEEccCCCCCCCCccEEEEEEcCHHHHHHHHhCCCCC-----CCcccceEEe
Q 027222 148 FKLKHTG--PGVLSMANAG-PDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQS-----GEPKSKVVIS 219 (226)
Q Consensus 148 ~~~~h~~--~G~l~~~~~~-~~~~~sqF~I~l~~~~~Ld~~~~VFGrVi~G~~vl~~I~~~~~~~-----~~P~~~i~I~ 219 (226)
+...|++ +|+|||||++ |++++|||||++.++|+||++|+|||+|++|||+|++|++..+.. +.|..+++|.
T Consensus 73 ~~~~~~~~~~G~lsMA~~g~P~t~~SQFFI~~~~~~~Ld~~ytVFG~Vv~GmdvvdkI~~~~~~~~~~~~~~~~~~~~i~ 152 (158)
T COG0652 73 FALNGDRHKRGTLSMARAGDPNSNGSQFFITVVDNPFLDGKYTVFGQVVEGMDVVDKIKNGDTDDSGYVQDVPADPVKIL 152 (158)
T ss_pred cccccccCCcceEeEcccCCcCCccCeEEEEecCCcccCCCCcEEEEEehhHHHHHHHHcCCccCCCcccCCCCCCeEEe
Confidence 8888877 9999999988 999999999999999999999999999999999999999865442 4576788888
Q ss_pred eeeee
Q 027222 220 NSGEM 224 (226)
Q Consensus 220 ~cg~l 224 (226)
+..++
T Consensus 153 ~~~~~ 157 (158)
T COG0652 153 SVKIV 157 (158)
T ss_pred eeeee
Confidence 86654
No 10
>KOG0881 consensus Cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.3e-46 Score=280.59 Aligned_cols=151 Identities=51% Similarity=0.887 Sum_probs=139.4
Q ss_pred cEEEEEEEECCEEeeEEEEEEecCCCchhHHHHHHhhcCCCCcccCCCCccccCCEEEEeecCceEeeCCCCCCCCCCCc
Q 027222 57 HKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFTLGDGRGGE 136 (226)
Q Consensus 57 ~~v~~~i~~~~~~~G~IvieL~~~~aP~~v~nF~~L~~g~~g~~~~~~~~~Y~g~~f~Rv~~~~~iq~Gd~~~~~~~~~~ 136 (226)
+.|+++.+ .|.|++|||-+.||+||+||.+|+ |++||+|..||||+++|||||||++ +.|.|+.
T Consensus 10 ~~V~LeTs-----mG~i~~ElY~kHaP~TC~NF~eLa----------rrgYYn~v~FHRii~DFmiQGGDPT-GTGRGGa 73 (164)
T KOG0881|consen 10 PNVTLETS-----MGKITLELYWKHAPRTCQNFAELA----------RRGYYNGVIFHRIIKDFMIQGGDPT-GTGRGGA 73 (164)
T ss_pred CeEEEeec-----ccceehhhhhhcCcHHHHHHHHHH----------hcccccceeeeehhhhheeecCCCC-CCCCCcc
Confidence 56777666 999999999999999999999999 4559999999999999999999998 8899999
Q ss_pred cccCCcccccc-cccccCCceEEEeeecCCCCCcceeEEEccCCCCCCCCccEEEEEEcCHHHHHHHHhCCC-CCCCccc
Q 027222 137 SIFGESFADEN-FKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGR-QSGEPKS 214 (226)
Q Consensus 137 ~~~~~~~~~e~-~~~~h~~~G~l~~~~~~~~~~~sqF~I~l~~~~~Ld~~~~VFGrVi~G~~vl~~I~~~~~-~~~~P~~ 214 (226)
++||.+|+||- ..++|.+.|.|+|++++||+|||||||+|.+.+|||++|++||||..||+|+.++....+ .+++|+.
T Consensus 74 SIYG~kF~DEi~~dLkhTGAGILsMANaGPnTNgSQFFiTLAPt~~LDGKHTIFGRV~~Gm~vikr~G~v~Td~~DRPi~ 153 (164)
T KOG0881|consen 74 SIYGDKFEDEIHSDLKHTGAGILSMANAGPNTNGSQFFITLAPTQWLDGKHTIFGRVCSGMEVIKRMGMVETDNSDRPID 153 (164)
T ss_pred ccccchhhhhhhhhhcccchhhhhhhccCCCCCCceEEEEecCccccCCcceeehhhhhhHHHHHhhcceecCCCCCCcc
Confidence 99999999984 568999999999999999999999999999999999999999999999999999988764 5689999
Q ss_pred ceEEeeeee
Q 027222 215 KVVISNSGE 223 (226)
Q Consensus 215 ~i~I~~cg~ 223 (226)
+++|.+.-.
T Consensus 154 ~~kIika~~ 162 (164)
T KOG0881|consen 154 EVKIIKAYP 162 (164)
T ss_pred ceeeEeeec
Confidence 999988654
No 11
>cd01923 cyclophilin_RING cyclophilin_RING: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a modified RING finger domain. This group includes the nuclear proteins, Human hCyP-60 and Caenorhabditis elegans MOG-6 which, compared to the archetypal cyclophilin Human cyclophilin A exhibit reduced peptidylprolyl cis- trans isomerase activity and lack a residue important for cyclophilin binding. Human hCyP-60 has been shown to physically interact with the proteinase inhibitor peptide eglin c and; C. elegans MOG-6 to physically interact with MEP-1, a nuclear zinc finger protein. MOG-6 has been shown to function in germline sex determination.
Probab=100.00 E-value=1.9e-44 Score=289.33 Aligned_cols=152 Identities=47% Similarity=0.821 Sum_probs=137.7
Q ss_pred EEEEEECCEEeeEEEEEEecCCCchhHHHHHHhhcCCCCcccCCCCccccCCEEEEeecCceEeeCCCCCCCCCCCcccc
Q 027222 60 YFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFTLGDGRGGESIF 139 (226)
Q Consensus 60 ~~~i~~~~~~~G~IvieL~~~~aP~~v~nF~~L~~g~~g~~~~~~~~~Y~g~~f~Rv~~~~~iq~Gd~~~~~~~~~~~~~ 139 (226)
|+.+.++ .|+|+||||++.||++|+||++||+.+ +|+|+.||||+|+|+||+||+. +++.++.++|
T Consensus 1 ~v~~~T~---~G~i~ieL~~~~aP~t~~nF~~L~~~g----------~Y~~~~f~rv~~~~~iq~Gd~~-~~g~~~~~~~ 66 (159)
T cd01923 1 YVRLHTN---KGDLNLELHCDKAPKACENFIKLCKKG----------YYDGTIFHRSIRNFMIQGGDPT-GTGRGGESIW 66 (159)
T ss_pred CEEEEEc---cccEEEEEeCCCChHHHHHHHHHHhcC----------ccCCcEEEEEeCCcEEEecccC-CCCCCCcccc
Confidence 3445543 999999999999999999999999543 9999999999999999999986 6778888889
Q ss_pred CCcccccc-cccccCCceEEEeeecCCCCCcceeEEEccCCCCCCCCccEEEEEEcCHHHHHHHHhCCC-CCCCcccceE
Q 027222 140 GESFADEN-FKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGR-QSGEPKSKVV 217 (226)
Q Consensus 140 ~~~~~~e~-~~~~h~~~G~l~~~~~~~~~~~sqF~I~l~~~~~Ld~~~~VFGrVi~G~~vl~~I~~~~~-~~~~P~~~i~ 217 (226)
+..+++|. ..++|+++|+|+|+++++++++|||||+++++|+||++|+|||||++|||+|++|++.++ ++++|+++|+
T Consensus 67 g~~~~~E~~~~~~h~~~G~v~ma~~~~~s~~sqFfIt~~~~~~Ld~~~~vFG~V~~G~~vl~~I~~~~~~~~~~P~~~i~ 146 (159)
T cd01923 67 GKPFKDEFKPNLSHDGRGVLSMANSGPNTNGSQFFITYRSCKHLDGKHTVFGRVVGGLETLEAMENVPDPGTDRPKEEIK 146 (159)
T ss_pred CCccCcccccCcCcCCCcEEEEeeCCCCCcccEEEEECCCCcccCCCccEEEEEEcCHHHHHHHHcCCCCCCCCCCCCeE
Confidence 98888884 467898999999999999999999999999999999999999999999999999998764 5789999999
Q ss_pred Eeeeeeec
Q 027222 218 ISNSGEMA 225 (226)
Q Consensus 218 I~~cg~l~ 225 (226)
|.+|+++.
T Consensus 147 I~~~~i~~ 154 (159)
T cd01923 147 IEDTSVFV 154 (159)
T ss_pred EEEeEEEe
Confidence 99999875
No 12
>cd01928 Cyclophilin_PPIL3_like Cyclophilin_PPIL3_like. Proteins similar to Human cyclophilin-like peptidylprolyl cis- trans isomerase (PPIL3). Members of this family lack a key residue important for cyclosporin binding: the tryptophan residue corresponding to W121 in human hCyP-18a; most members have a histidine at this position. The exact function of the protein is not known.
Probab=100.00 E-value=2.6e-44 Score=286.82 Aligned_cols=143 Identities=48% Similarity=0.794 Sum_probs=132.2
Q ss_pred EeeEEEEEEecCCCchhHHHHHHhhcCCCCcccCCCCccccCCEEEEeecCceEeeCCCCCCCCCCCccccCCccccccc
Q 027222 69 PIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFTLGDGRGGESIFGESFADENF 148 (226)
Q Consensus 69 ~~G~IvieL~~~~aP~~v~nF~~L~~g~~g~~~~~~~~~Y~g~~f~Rv~~~~~iq~Gd~~~~~~~~~~~~~~~~~~~e~~ 148 (226)
+.|+|+||||++.||++|+||++||+++ ||+|+.||||+|+|++||||+. +++.++.++|+..+++|..
T Consensus 8 ~~G~i~ieL~~~~aP~t~~nF~~L~~~g----------~Y~~~~f~rv~~~f~iq~Gd~~-~~g~g~~~~~~~~~~~e~~ 76 (153)
T cd01928 8 NLGDIKIELFCDDCPKACENFLALCASG----------YYNGCIFHRNIKGFMVQTGDPT-GTGKGGESIWGKKFEDEFR 76 (153)
T ss_pred ccccEEEEEcCCCCcHHHHHHHHHHhcC----------ccCCcEEEEeCCCCEEEccccC-CCCCCCCccCCCccccccc
Confidence 3999999999999999999999999654 9999999999999999999986 5677888888888998875
Q ss_pred -ccccCCceEEEeeecCCCCCcceeEEEccCCCCCCCCccEEEEEEcCHHHHHHHHhCCC-CCCCcccceEEeeee
Q 027222 149 -KLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGR-QSGEPKSKVVISNSG 222 (226)
Q Consensus 149 -~~~h~~~G~l~~~~~~~~~~~sqF~I~l~~~~~Ld~~~~VFGrVi~G~~vl~~I~~~~~-~~~~P~~~i~I~~cg 222 (226)
.++|+++|+|+|+++++++++|||||+++++|+||++|+|||||++|||+|++|++.++ ++++|+.+|+|.+|-
T Consensus 77 ~~~~~~~~G~v~ma~~~~~~~~SqFfI~~~~~~~Ld~~~tvFG~V~~G~dvl~~I~~~~~~~~~~P~~~i~I~~~~ 152 (153)
T cd01928 77 ETLKHDSRGVVSMANNGPNTNGSQFFITYAKQPHLDGKYTVFGKVIDGFETLDTLEKLPVDKKYRPLEEIRIKDVT 152 (153)
T ss_pred cCCCcCCCcEEEEeeCCCCCcccEEEEEeCCCcccCCCceEEEEEEeCHHHHHHHHcCCCCCCCCCcCCeEEEEeE
Confidence 57888999999999999999999999999999999999999999999999999998875 578999999999983
No 13
>cd01927 cyclophilin_WD40 cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain. This group consists of several hypothetical and putative eukaryotic and bacterial proteins which have a cyclophilin domain and a WD40 domain. Function of the protein is not known.
Probab=100.00 E-value=2.8e-44 Score=285.19 Aligned_cols=142 Identities=55% Similarity=0.891 Sum_probs=131.4
Q ss_pred EEeeEEEEEEecCCCchhHHHHHHhhcCCCCcccCCCCccccCCEEEEeecCceEeeCCCCCCCCCCCccccCCcccccc
Q 027222 68 KPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFTLGDGRGGESIFGESFADEN 147 (226)
Q Consensus 68 ~~~G~IvieL~~~~aP~~v~nF~~L~~g~~g~~~~~~~~~Y~g~~f~Rv~~~~~iq~Gd~~~~~~~~~~~~~~~~~~~e~ 147 (226)
|+.|+|+||||++.||++|+||++||+++ ||+|+.||||+|+|++|+||+. +++.++.++|+..+++|.
T Consensus 4 T~~G~i~ieL~~~~aP~t~~nF~~L~~~g----------~Y~~~~f~Rvi~~f~iq~Gd~~-~~g~g~~~~~~~~~~~e~ 72 (148)
T cd01927 4 TTKGDIHIRLFPEEAPKTVENFTTHARNG----------YYNNTIFHRVIKGFMIQTGDPT-GDGTGGESIWGKEFEDEF 72 (148)
T ss_pred eccccEEEEEeCCCCcHHHHHHHHHhhcC----------CcCCcEEEEEcCCcEEEecccC-CCCCCCCcccCCcccccc
Confidence 34999999999999999999999999654 9999999999999999999986 677888888888899886
Q ss_pred c-ccccCCceEEEeeecCCCCCcceeEEEccCCCCCCCCccEEEEEEcCHHHHHHHHhCCC-CCCCcccceEEee
Q 027222 148 F-KLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGR-QSGEPKSKVVISN 220 (226)
Q Consensus 148 ~-~~~h~~~G~l~~~~~~~~~~~sqF~I~l~~~~~Ld~~~~VFGrVi~G~~vl~~I~~~~~-~~~~P~~~i~I~~ 220 (226)
. .++|.++|+|+|+++++++++|||||+++++|+||++|+|||||++|||+|++|++.++ ++++|.++|+|.+
T Consensus 73 ~~~~~h~~~G~l~ma~~~~~s~~SqFfIt~~~~p~Ldg~~tvFG~V~~G~dvl~~I~~~~~~~~~~P~~~i~I~~ 147 (148)
T cd01927 73 SPSLKHDRPYTLSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVVKGMDVVQRIENVKTDKNDRPYEDIKIIN 147 (148)
T ss_pred ccccCcCCCeEEEEeeCCCCCCCceEEEEcCCCcccCCCceEEEEEEcCHHHHHHHHcCCCCCCCCCcCCeEEEe
Confidence 5 78899899999999999999999999999999999999999999999999999998875 5689999999986
No 14
>cd01922 cyclophilin_SpCYP2_like cyclophilin_SpCYP2_like: cyclophilin 2-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to Schizosaccharomyces pombe cyp-2. These proteins bind their respective SNW chromatin binding protein in autologous systems, in a CsA independent manner indicating interaction with a surface outside the PPIase active site. SNW proteins play a basic and broad range role in signaling.
Probab=100.00 E-value=3.8e-44 Score=283.80 Aligned_cols=142 Identities=52% Similarity=0.906 Sum_probs=131.0
Q ss_pred EEeeEEEEEEecCCCchhHHHHHHhhcCCCCcccCCCCccccCCEEEEeecCceEeeCCCCCCCCCCCccccCCcccccc
Q 027222 68 KPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFTLGDGRGGESIFGESFADEN 147 (226)
Q Consensus 68 ~~~G~IvieL~~~~aP~~v~nF~~L~~g~~g~~~~~~~~~Y~g~~f~Rv~~~~~iq~Gd~~~~~~~~~~~~~~~~~~~e~ 147 (226)
|+.|+|+||||++.||++|+||++||+.+ ||+++.||||+|+|++||||+. +++.++.++++..+++|.
T Consensus 4 T~~G~i~ieL~~~~aP~t~~nF~~L~~~g----------~Y~~~~f~Rvi~~f~iq~Gd~~-~~g~~~~~~~~~~~~~e~ 72 (146)
T cd01922 4 TTMGEITLELYWNHAPKTCKNFYELAKRG----------YYNGTIFHRLIKDFMIQGGDPT-GTGRGGASIYGKKFEDEI 72 (146)
T ss_pred eccccEEEEEcCCCCcHHHHHHHHHHhcC----------CcCCcEEEEEcCCcEEEecccC-CCCCCcccccCCCccccc
Confidence 45999999999999999999999999654 9999999999999999999986 567778888888888884
Q ss_pred -cccccCCceEEEeeecCCCCCcceeEEEccCCCCCCCCccEEEEEEcCHHHHHHHHhCCCCCCCcccceEEee
Q 027222 148 -FKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGEPKSKVVISN 220 (226)
Q Consensus 148 -~~~~h~~~G~l~~~~~~~~~~~sqF~I~l~~~~~Ld~~~~VFGrVi~G~~vl~~I~~~~~~~~~P~~~i~I~~ 220 (226)
..++|.++|+|+|+++++++++|||||+++++|+||++|+|||||++|||||++|++.++++++|.++|+|.+
T Consensus 73 ~~~~~h~~~G~l~ma~~~~~s~~sqFfIt~~~~p~Ld~~~tvFG~V~~G~dvl~~I~~~~~~~~~P~~~I~I~~ 146 (146)
T cd01922 73 HPELKHTGAGILSMANAGPNTNGSQFFITLAPTPWLDGKHTIFGRVSKGMKVIENMVEVQTQTDRPIDEVKILK 146 (146)
T ss_pred ccCcCCCCCeEEEEeeCCCCCCccEEEEEcCCCcccCCCCCEEEEEEcCHHHHHHHHhCCCCCCCcCCCeEEeC
Confidence 5688999999999999999999999999999999999999999999999999999998877889999999963
No 15
>cd01921 cyclophilin_RRM cyclophilin_RRM: cyclophilin-type peptidylprolyl cis- trans isomerase domain occuring with a C-terminal RNA recognition motif domain (RRM). This subfamily of the cyclophilin domain family contains a number of eukaryotic cyclophilins having the RRM domain including the nuclear proteins: human hCyP-57, Arabidopsis thaliana AtCYP59, Caenorhabditis elegans CeCyP-44 and Paramecium tetrurelia Kin241. The Kin241 protein has been shown to have a role in cell morphogenesis.
Probab=100.00 E-value=2.1e-43 Score=285.28 Aligned_cols=147 Identities=39% Similarity=0.652 Sum_probs=130.2
Q ss_pred EEeeEEEEEEecCCCchhHHHHHHhhcCCCCcccCCCCccccCCEEEEeecCceEeeCCCCCCCCCCCccccC-------
Q 027222 68 KPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFTLGDGRGGESIFG------- 140 (226)
Q Consensus 68 ~~~G~IvieL~~~~aP~~v~nF~~L~~g~~g~~~~~~~~~Y~g~~f~Rv~~~~~iq~Gd~~~~~~~~~~~~~~------- 140 (226)
|+.|+|+||||++.||+||+||++||+++ +|+|+.||||+++|+|||||+. +++.++.++++
T Consensus 4 Ts~G~i~ieL~~~~aP~t~~nF~~L~~~~----------~Y~g~~fhrvi~~f~iQgGd~~-~~g~~~~~~~~~~~~~~~ 72 (166)
T cd01921 4 TTLGDLVIDLFTDECPLACLNFLKLCKLK----------YYNFCLFYNVQKDFIAQTGDPT-GTGAGGESIYSQLYGRQA 72 (166)
T ss_pred eccCCEEEEEcCCCCCHHHHHHHHHHhcC----------CcCCCEEEEEeCCceEEECCcC-CCCCCCcccccccccccC
Confidence 45999999999999999999999999654 9999999999999999999987 55666666654
Q ss_pred Ccccccc-cccccCCceEEEeeecCCCCCcceeEEEccC-CCCCCCCccEEEEEEcCHHHHHHHHhCCC-CCCCcccceE
Q 027222 141 ESFADEN-FKLKHTGPGVLSMANAGPDTNGSQFFITTVI-TSWLDGRHVVFGKVLSGMDVVRKIEAEGR-QSGEPKSKVV 217 (226)
Q Consensus 141 ~~~~~e~-~~~~h~~~G~l~~~~~~~~~~~sqF~I~l~~-~~~Ld~~~~VFGrVi~G~~vl~~I~~~~~-~~~~P~~~i~ 217 (226)
..+++|. ..++|+++|+|+|+++++++++|||||++++ .|+||++|+|||||++|||+|++|++..+ ++++|+++|+
T Consensus 73 ~~~~~e~~~~~~h~~~G~l~ma~~~~~~~~SQFfIt~~~~~~~Ldg~~tvFG~Vi~G~dvv~~I~~~~~~~~~~P~~~i~ 152 (166)
T cd01921 73 RFFEPEILPLLKHSKKGTVSMVNAGDNLNGSQFYITLGENLDYLDGKHTVFGQVVEGFDVLEKINDAIVDDDGRPLKDIR 152 (166)
T ss_pred cccCcccCCccccCCceEEEEeECCCCCccceEEEEcCCCCcccCCCccEEEEEEcCHHHHHHHHcCCCCCCCCCCCCeE
Confidence 2355554 4678989999999999999999999999986 79999999999999999999999998765 5789999999
Q ss_pred Eeeeeeec
Q 027222 218 ISNSGEMA 225 (226)
Q Consensus 218 I~~cg~l~ 225 (226)
|.+|++|.
T Consensus 153 I~~~~i~~ 160 (166)
T cd01921 153 IKHTHILD 160 (166)
T ss_pred EEEEEEEC
Confidence 99999985
No 16
>PRK10903 peptidyl-prolyl cis-trans isomerase A (rotamase A); Provisional
Probab=100.00 E-value=1.4e-42 Score=285.60 Aligned_cols=152 Identities=32% Similarity=0.504 Sum_probs=127.3
Q ss_pred CcEEEEEEEECCEEeeEEEEEEecCCCchhHHHHHHhhcCCCCcccCCCCccccCCEEEEeecCceEeeCCCCCCCCCCC
Q 027222 56 THKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFTLGDGRGG 135 (226)
Q Consensus 56 ~~~v~~~i~~~~~~~G~IvieL~~~~aP~~v~nF~~L~~g~~g~~~~~~~~~Y~g~~f~Rv~~~~~iq~Gd~~~~~~~~~ 135 (226)
+.+|.+++. .|+|+||||++.||+||+||++||+.+ ||||+.||||+|+|+|||||+....+
T Consensus 28 ~~~v~l~T~-----~G~i~ieL~~~~aP~t~~NF~~L~~~g----------~Ydg~~FhRvi~~f~iQgG~~~~~~~--- 89 (190)
T PRK10903 28 DPHVLLTTS-----AGNIELELNSQKAPVSVKNFVDYVNSG----------FYNNTTFHRVIPGFMIQGGGFTEQMQ--- 89 (190)
T ss_pred CcEEEEEec-----cccEEEEEeCCCCcHHHHHHHHHHhcC----------CcCCcEEEEEeCCceEEeCCcCCCCC---
Confidence 345555543 999999999999999999999999543 99999999999999999999764321
Q ss_pred ccccCCcccccccccccCCceEEEeeecC-CCCCcceeEEEccCCCCCCC-----CccEEEEEEcCHHHHHHHHhCCCC-
Q 027222 136 ESIFGESFADENFKLKHTGPGVLSMANAG-PDTNGSQFFITTVITSWLDG-----RHVVFGKVLSGMDVVRKIEAEGRQ- 208 (226)
Q Consensus 136 ~~~~~~~~~~e~~~~~h~~~G~l~~~~~~-~~~~~sqF~I~l~~~~~Ld~-----~~~VFGrVi~G~~vl~~I~~~~~~- 208 (226)
...++..+.+|.....|+.+|+|+|++.+ +++++|||||+++++++||+ +|+|||||++|||||++|++.+++
T Consensus 90 ~~~~~~~~~~e~~~~l~~~~G~lama~~~~~~sn~SQFfIt~~~~~~ld~~~~dg~ytvFG~V~eG~dvl~~I~~~~~~~ 169 (190)
T PRK10903 90 QKKPNPPIKNEADNGLRNTRGTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAVFGKVVKGMDVADKISQVPTHD 169 (190)
T ss_pred CCCCCCcccCcccccCcCCCcEEEeCCCCCCCCcccEEEEECcCcccccCCccCCCccEEEEEecCHHHHHHHHcCCCCC
Confidence 12234567777555556779999999965 89999999999999999984 899999999999999999987764
Q ss_pred ----CCCcccceEEeeeeeec
Q 027222 209 ----SGEPKSKVVISNSGEMA 225 (226)
Q Consensus 209 ----~~~P~~~i~I~~cg~l~ 225 (226)
+++|.++|+|.+|+++.
T Consensus 170 ~~~~~~~P~~~v~I~~~~v~~ 190 (190)
T PRK10903 170 VGPYQNVPSKPVVILSAKVLP 190 (190)
T ss_pred CCCCCCcccCCeEEEEEEEeC
Confidence 36899999999999863
No 17
>cd01925 cyclophilin_CeCYP16-like cyclophilin_CeCYP16-like: cyclophilin-type peptidylprolyl cis- trans isomerase) (PPIase) domain similar to Caenorhabditis elegans cyclophilin 16. C. elegans CeCYP-16, compared to the archetypal cyclophilin Human cyclophilin A has, a reduced peptidylprolyl cis- trans isomerase activity, is cyclosporin insensitive and shows an altered substrate preference favoring, hydrophobic, acidic or amide amino acids. Most members of this subfamily have a glutamate residue in the active site at the position equivalent to a tryptophan (W121 in Human cyclophilin A), which has been shown to be important for cyclophilin binding.
Probab=100.00 E-value=1.4e-41 Score=275.78 Aligned_cols=155 Identities=40% Similarity=0.677 Sum_probs=138.5
Q ss_pred cCcEEEEEEEECCEEeeEEEEEEecCCCchhHHHHHHhhcCCCCcccCCCCccccCCEEEEeecCceEeeCCCCCCCCCC
Q 027222 55 VTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFTLGDGRG 134 (226)
Q Consensus 55 ~~~~v~~~i~~~~~~~G~IvieL~~~~aP~~v~nF~~L~~g~~g~~~~~~~~~Y~g~~f~Rv~~~~~iq~Gd~~~~~~~~ 134 (226)
.+.+|.++++ .|+|+||||++.||+||+||++||+.+ ||+|+.||||+|+|++||||+. +++.+
T Consensus 4 ~~~~v~i~Ts-----~G~i~ieL~~~~~P~t~~nF~~L~~~~----------~Y~~~~f~Rvi~~f~iQgGd~~-~~g~g 67 (171)
T cd01925 4 TTGKVILKTT-----AGDIDIELWSKEAPKACRNFIQLCLEG----------YYDNTIFHRVVPGFIIQGGDPT-GTGTG 67 (171)
T ss_pred cccEEEEEEc-----cccEEEEEeCCCChHHHHHHHHHHhcC----------CCCCCEEEEEcCCcEEEccccC-CCCcc
Confidence 3556666554 999999999999999999999999644 9999999999999999999987 67888
Q ss_pred CccccCCccccccc-ccccCCceEEEeeecCCCCCcceeEEEccCCCCCCCCccEEEEEE-cCHHHHHHHHhCCC-CCCC
Q 027222 135 GESIFGESFADENF-KLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVL-SGMDVVRKIEAEGR-QSGE 211 (226)
Q Consensus 135 ~~~~~~~~~~~e~~-~~~h~~~G~l~~~~~~~~~~~sqF~I~l~~~~~Ld~~~~VFGrVi-~G~~vl~~I~~~~~-~~~~ 211 (226)
+.++|+..+++|.. .++|+++|+|+|+++++++++|||||++++.|+||++|+|||||+ ++|+++++|++..+ ++++
T Consensus 68 ~~s~~g~~~~~E~~~~~~~~~~G~l~ma~~g~~s~~sqFfIt~~~~~~ldg~~tvFG~V~g~~~~~v~~i~~~~~~~~~~ 147 (171)
T cd01925 68 GESIYGEPFKDEFHSRLRFNRRGLVGMANAGDDSNGSQFFFTLDKADELNNKHTLFGKVTGDTIYNLLKLAEVETDKDER 147 (171)
T ss_pred CcccCCCccCcccccCcCCCCCcEEEECcCCCCCcccEEEEEcCCCcccCCCceEEEEEEECcHHHHHHHhcCCcCCCCC
Confidence 88899988988865 567889999999999999999999999999999999999999999 46888999998765 5689
Q ss_pred cccceEEeeeeeec
Q 027222 212 PKSKVVISNSGEMA 225 (226)
Q Consensus 212 P~~~i~I~~cg~l~ 225 (226)
|.++|+|.+|+++.
T Consensus 148 P~~~i~I~~~~i~~ 161 (171)
T cd01925 148 PVYPPKITSVEVLE 161 (171)
T ss_pred cCCCeEEEEEEEEc
Confidence 99999999999875
No 18
>KOG0883 consensus Cyclophilin type, U box-containing peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-41 Score=297.31 Aligned_cols=159 Identities=44% Similarity=0.758 Sum_probs=147.7
Q ss_pred ccccCcEEEEEEEECCEEeeEEEEEEecCCCchhHHHHHHhhcCCCCcccCCCCccccCCEEEEeecCceEeeCCCCCCC
Q 027222 52 LEKVTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFTLGD 131 (226)
Q Consensus 52 ~~~~~~~v~~~i~~~~~~~G~IvieL~~~~aP~~v~nF~~L~~g~~g~~~~~~~~~Y~g~~f~Rv~~~~~iq~Gd~~~~~ 131 (226)
..++..+.|+.+.++ .|.|-|||+.|.+|++|+||++||.. +||+|+.|||.|+|||||||||+ +.
T Consensus 271 y~rvKkkgyvrl~Tn---~G~lNlELhcd~~P~aceNFI~lc~~----------gYYnnt~FHRsIrnFmiQGGDPT-GT 336 (518)
T KOG0883|consen 271 YTRVKKKGYVRLVTN---HGPLNLELHCDYAPRACENFITLCKN----------GYYNNTIFHRSIRNFMIQGGDPT-GT 336 (518)
T ss_pred hccccccceEEEecc---CCceeeEeecCcchHHHHHHHHHHhc----------ccccchHHHHHHHHHeeeCCCCC-CC
Confidence 345667889999977 99999999999999999999999943 39999999999999999999998 88
Q ss_pred CCCCccccCCcccccc-cccccCCceEEEeeecCCCCCcceeEEEccCCCCCCCCccEEEEEEcCHHHHHHHHhCCC-CC
Q 027222 132 GRGGESIFGESFADEN-FKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGR-QS 209 (226)
Q Consensus 132 ~~~~~~~~~~~~~~e~-~~~~h~~~G~l~~~~~~~~~~~sqF~I~l~~~~~Ld~~~~VFGrVi~G~~vl~~I~~~~~-~~ 209 (226)
|.||.++||.+|.||. ..+.|+.||+|||||+|||+|||||||+...+.+||++|++||||+-|+++|++|++.++ +.
T Consensus 337 G~GGeSiWgKpFkDEf~~~l~H~gRGvlSMANsGpnTNgSQFFItyrsckhLd~KHTIFGrvVGGldtL~amEnve~d~~ 416 (518)
T KOG0883|consen 337 GRGGESIWGKPFKDEFCSNLSHDGRGVLSMANSGPNTNGSQFFITYRSCKHLDNKHTIFGRVVGGLDTLTAMENVETDEK 416 (518)
T ss_pred CCCCccccCCccccccCCCCCcCCcceEeeccCCCCCCCceEEEEecchhhccccceeeeeeeccHHHHHHHhcCCCCCC
Confidence 9999999999999994 569999999999999999999999999999999999999999999999999999999885 45
Q ss_pred CCcccceEEeeeeee
Q 027222 210 GEPKSKVVISNSGEM 224 (226)
Q Consensus 210 ~~P~~~i~I~~cg~l 224 (226)
++|+.+|+|.+.-++
T Consensus 417 DrP~e~I~i~~~~VF 431 (518)
T KOG0883|consen 417 DRPKEEIKIEDAIVF 431 (518)
T ss_pred CCcccceEEeeeEEe
Confidence 899999999988765
No 19
>PRK10791 peptidyl-prolyl cis-trans isomerase B (rotamase B); Provisional
Probab=100.00 E-value=2.6e-40 Score=266.47 Aligned_cols=143 Identities=36% Similarity=0.584 Sum_probs=119.9
Q ss_pred EeeEEEEEEecCCCchhHHHHHHhhcCCCCcccCCCCccccCCEEEEeecCceEeeCCCCCCCCCCCccccCCccccccc
Q 027222 69 PIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFTLGDGRGGESIFGESFADENF 148 (226)
Q Consensus 69 ~~G~IvieL~~~~aP~~v~nF~~L~~g~~g~~~~~~~~~Y~g~~f~Rv~~~~~iq~Gd~~~~~~~~~~~~~~~~~~~e~~ 148 (226)
..|+|+|+||++.||+||+||++||+.+ ||+++.||||+|+|+|||||+..+.+. ..++..+++|..
T Consensus 7 ~~G~i~ieL~~~~aP~t~~nF~~L~~~g----------~Yd~~~fhRvi~~f~iQgGd~~~~~~~---~~~~~~~~~e~~ 73 (164)
T PRK10791 7 NHGDIVIKTFDDKAPETVKNFLDYCREG----------FYNNTIFHRVINGFMIQGGGFEPGMKQ---KATKEPIKNEAN 73 (164)
T ss_pred ccccEEEEEeCCCCcHHHHHHHHHHhcC----------CcCCcEEEEEecCcEEEeCCcCCCCCc---CCCCCCcCCccc
Confidence 4999999999999999999999999654 999999999999999999997643322 123455666643
Q ss_pred ccccCCceEEEeeecC-CCCCcceeEEEccCCCCCC-------C-CccEEEEEEcCHHHHHHHHhCCCCC-----CCccc
Q 027222 149 KLKHTGPGVLSMANAG-PDTNGSQFFITTVITSWLD-------G-RHVVFGKVLSGMDVVRKIEAEGRQS-----GEPKS 214 (226)
Q Consensus 149 ~~~h~~~G~l~~~~~~-~~~~~sqF~I~l~~~~~Ld-------~-~~~VFGrVi~G~~vl~~I~~~~~~~-----~~P~~ 214 (226)
...|+.+|+|+|++.+ |++++|||||++.++++|| + +|+|||||++|||+|++|++..++. ++|..
T Consensus 74 ~~~~~~~G~lsma~~~~p~s~~SQFfI~~~~~~~ld~~~~~~d~~~~tvFG~V~eG~dvl~~I~~~~~~~~~~~~~~P~~ 153 (164)
T PRK10791 74 NGLKNTRGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGYCVFAEVVEGMDVVDKIKGVATGRSGMHQDVPKE 153 (164)
T ss_pred ccccCCCcEEEECCCCCcCCccceEEEEecCchhhcccccccCCCCccEEEEEecCHHHHHHHHcCcCCCCCccCCCcCC
Confidence 3344569999999975 9999999999999988776 3 7999999999999999999877543 68999
Q ss_pred ceEEeeeeee
Q 027222 215 KVVISNSGEM 224 (226)
Q Consensus 215 ~i~I~~cg~l 224 (226)
+|+|.+|.+.
T Consensus 154 ~v~I~~~~i~ 163 (164)
T PRK10791 154 DVIIESVTVS 163 (164)
T ss_pred CeEEEEEEEe
Confidence 9999999764
No 20
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.6e-41 Score=298.71 Aligned_cols=145 Identities=53% Similarity=0.856 Sum_probs=135.5
Q ss_pred CEEeeEEEEEEecCCCchhHHHHHHhhcCCCCcccCCCCccccCCEEEEeecCceEeeCCCCCCCCCCCccccCCccccc
Q 027222 67 GKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFTLGDGRGGESIFGESFADE 146 (226)
Q Consensus 67 ~~~~G~IvieL~~~~aP~~v~nF~~L~~g~~g~~~~~~~~~Y~g~~f~Rv~~~~~iq~Gd~~~~~~~~~~~~~~~~~~~e 146 (226)
.|+.|+|.|.|||+.||+||+||..-|+.+ ||||..||||++|||||+|||. ++|+||.++||+.|+||
T Consensus 410 htt~gdi~~kl~p~ecpktvenf~th~rng----------yy~~~~fhriik~fmiqtgdp~-g~gtggesiwg~dfede 478 (558)
T KOG0882|consen 410 HTTQGDIHIKLYPEECPKTVENFTTHSRNG----------YYDNHTFHRIIKGFMIQTGDPL-GDGTGGESIWGKDFEDE 478 (558)
T ss_pred EecccceEEEecccccchhhhhhhccccCc----------cccCcchHHhhhhheeecCCCC-CCCCCCcccccccchhh
Confidence 366999999999999999999999999544 9999999999999999999998 89999999999999999
Q ss_pred cc-ccccCCceEEEeeecCCCCCcceeEEEccCCCCCCCCccEEEEEEcCHHHHHHHHhCC-CCCCCcccceEEeeee
Q 027222 147 NF-KLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEG-RQSGEPKSKVVISNSG 222 (226)
Q Consensus 147 ~~-~~~h~~~G~l~~~~~~~~~~~sqF~I~l~~~~~Ld~~~~VFGrVi~G~~vl~~I~~~~-~~~~~P~~~i~I~~cg 222 (226)
.. .++|+++-+|||||+|||+||||||||+.+.||||++|+|||||+.||||+++|+++. +++++|.+++.|.+--
T Consensus 479 fh~~lrhdrpft~smanag~ntngsqffit~~~tpwld~khtvfgrv~~gm~vvqri~~v~t~k~drp~e~v~iinis 556 (558)
T KOG0882|consen 479 FHPNLRHDRPFTVSMANAGPNTNGSQFFITTVPTPWLDGKHTVFGRVTAGMDVVQRIEQVKTDKYDRPYEDVKIINIS 556 (558)
T ss_pred cCcccccCCCceEEecccCCCCCCceEEEEecCccccCCcceeEEEEecchhHHhHhhhcccCcCCCCCCceeEEEEe
Confidence 54 6999999999999999999999999999999999999999999999999999999876 4578999999998753
No 21
>cd01920 cyclophilin_EcCYP_like cyclophilin_EcCYP_like: cyclophilin-type A-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to the cytosolic E. coli cyclophilin A and Streptomyces antibioticus SanCyp18. Compared to the archetypal cyclophilin Human cyclophilin A, these have reduced affinity for cyclosporin A. E. coli cyclophilin A has a similar peptidylprolyl cis- trans isomerase activity to the human cyclophilin A. Most members of this subfamily contain a phenylalanine residue at the position equivalent to Human cyclophilin W121, where a tyrptophan has been shown to be important for cyclophilin binding.
Probab=100.00 E-value=9.4e-40 Score=261.16 Aligned_cols=140 Identities=36% Similarity=0.528 Sum_probs=119.4
Q ss_pred EEeeEEEEEEecCCCchhHHHHHHhhcCCCCcccCCCCccccCCEEEEeecCceEeeCCCCCCCCCCCccccCCcccccc
Q 027222 68 KPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFTLGDGRGGESIFGESFADEN 147 (226)
Q Consensus 68 ~~~G~IvieL~~~~aP~~v~nF~~L~~g~~g~~~~~~~~~Y~g~~f~Rv~~~~~iq~Gd~~~~~~~~~~~~~~~~~~~e~ 147 (226)
|+.|+|+||||++.||++|+||++||+.+ ||+|+.||||+|+|++||||+....+. ..++..+.+|.
T Consensus 4 T~~G~i~ieL~~~~aP~t~~nF~~L~~~g----------~Yd~~~fhRvi~~f~iQ~Gd~~~~~~~---~~~~~~~~~e~ 70 (155)
T cd01920 4 TSLGDIVVELYDDKAPITVENFLAYVRKG----------FYDNTIFHRVISGFVIQGGGFTPDLAQ---KETLKPIKNEA 70 (155)
T ss_pred ecceeEEEEEeCCCCcHHHHHHHHHHhcC----------CCCCCEEEEEeCCcEEEeCCCCCCCCc---cccCCcccCcc
Confidence 34999999999999999999999999543 999999999999999999998743322 22345566665
Q ss_pred cccccCCceEEEeeecC-CCCCcceeEEEccCCCCCCC-----CccEEEEEEcCHHHHHHHHhCCCCC-----CCcccce
Q 027222 148 FKLKHTGPGVLSMANAG-PDTNGSQFFITTVITSWLDG-----RHVVFGKVLSGMDVVRKIEAEGRQS-----GEPKSKV 216 (226)
Q Consensus 148 ~~~~h~~~G~l~~~~~~-~~~~~sqF~I~l~~~~~Ld~-----~~~VFGrVi~G~~vl~~I~~~~~~~-----~~P~~~i 216 (226)
....|+++|+|+|++++ +++++|||||+++++|+||. +|+|||||++|||+|++|++.+++. ++|..+|
T Consensus 71 ~~~~~~~~G~v~ma~~~~~~s~~SqFfI~~~~~~~ld~~~~~~~ytvFG~V~eG~dvl~~I~~~~~~~~~~~~~~p~~~v 150 (155)
T cd01920 71 GNGLSNTRGTIAMARTNAPDSATSQFFINLKDNASLDYQNEQWGYTVFGEVTEGMDVVDKIAGVETYSFGSYQDVPVQDV 150 (155)
T ss_pred cccccCCceEEEECCCCCCCCccceEEEECCCchhcCCcccCCCccEEEEEecCHHHHHHHHcCCccCCCCcCCCcCCCe
Confidence 55556789999999965 89999999999999999995 7999999999999999999887643 5899999
Q ss_pred EEee
Q 027222 217 VISN 220 (226)
Q Consensus 217 ~I~~ 220 (226)
+|.+
T Consensus 151 ~i~~ 154 (155)
T cd01920 151 IIES 154 (155)
T ss_pred EEEE
Confidence 9976
No 22
>KOG0865 consensus Cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-40 Score=266.62 Aligned_cols=163 Identities=64% Similarity=1.151 Sum_probs=156.0
Q ss_pred cCcEEEEEEEECCEEeeEEEEEEecCCCchhHHHHHHhhcCCCCcccCCCCccccCCEEEEe---ecCceEeeCCCCCCC
Q 027222 55 VTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRI---IPSFMIQGGDFTLGD 131 (226)
Q Consensus 55 ~~~~v~~~i~~~~~~~G~IvieL~~~~aP~~v~nF~~L~~g~~g~~~~~~~~~Y~g~~f~Rv---~~~~~iq~Gd~~~~~ 131 (226)
.++++|+|+++++++.|++.++|+.|..|+|++||..||++++|.+ |+++.|||+ +++||+||||.+.++
T Consensus 2 ~~~~vf~d~~~~~~p~gr~~~~l~ad~~Pktaenf~al~tgekg~~-------yk~s~fhr~~~~~~~fm~qggDft~hn 74 (167)
T KOG0865|consen 2 VNPTVFFDIAIDGEPLGRIVFELFADKIPKTAENFRALCTGEKGFG-------YKGSCFHRLIPIIPGFMCQGGDFTCHN 74 (167)
T ss_pred CCCeeeeeeeecCccccccceecccccCcchHhhhhhcccCCCccc-------cccchhhhccccccceeeccCcccccC
Confidence 3689999999999999999999999999999999999999987764 999999993 347999999999999
Q ss_pred CCCCccccCCcccccccccccCCceEEEeeecCCCCCcceeEEEccCCCCCCCCccEEEEEEcCHHHHHHHHhCCCCCCC
Q 027222 132 GRGGESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGE 211 (226)
Q Consensus 132 ~~~~~~~~~~~~~~e~~~~~h~~~G~l~~~~~~~~~~~sqF~I~l~~~~~Ld~~~~VFGrVi~G~~vl~~I~~~~~~~~~ 211 (226)
+++++++|+++|+||++.++|..+|.|+|++.+|++++|||||++....|||++|+|||+|.+||+++++|+..+.++++
T Consensus 75 gtggkSiy~ekF~DenFilkhtgpGiLSmaNagpntngsqffictaktewLdgkhVVfGkv~eGm~iv~a~e~~gs~~gk 154 (167)
T KOG0865|consen 75 GTGGKSIYGEKFDDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMDIVEAMERFGSRNGK 154 (167)
T ss_pred CccceEecccccCCcCcEEecCCCCeeehhhcCCCccccEEEEEccccccccCceeEcCceEcccchhhhhhccCCcCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccceEEeeeeee
Q 027222 212 PKSKVVISNSGEM 224 (226)
Q Consensus 212 P~~~i~I~~cg~l 224 (226)
+.++|.|.+||+|
T Consensus 155 ~~~~i~i~dcg~l 167 (167)
T KOG0865|consen 155 TSKKITIADCGQL 167 (167)
T ss_pred ccccEEEecCCcC
Confidence 9999999999986
No 23
>PF00160 Pro_isomerase: Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD; InterPro: IPR002130 Cyclophilin [] is the major high-affinity binding protein in vertebrates for the immunosuppressive drug cyclosporin A (CSA), but is also found in other organisms. It exhibits a peptidyl-prolyl cis-trans isomerase activity (5.2.1.8 from EC) (PPIase or rotamase). PPIase is an enzyme that accelerates protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides []. It is probable that CSA mediates some of its effects via an forming a tight complex with cyclophilin that inhibits the phosphatase activity of calcineurin [], []. Cyclophilin A is a cytosolic and highly abundant protein. The protein belongs to a family of isozymes, including cyclophilins B and C, and natural killer cell cyclophilin-related protein [, , ]. Major isoforms have been found throughout the cell, including the ER, and some are even secreted. The sequences of the different forms of cyclophilin-type PPIases are well conserved. Note: FKBP's, a family of proteins that bind the immunosuppressive drug FK506, are also PPIases, but their sequence is not at all related to that of cyclophilin (see IPR001179 from INTERPRO).; GO: 0003755 peptidyl-prolyl cis-trans isomerase activity, 0006457 protein folding; PDB: 1Z81_A 1IHG_A 1IIP_A 3PMP_B 3O7T_A 2B71_A 1QNG_A 1QNH_A 2HQJ_A 2RMC_G ....
Probab=100.00 E-value=3.3e-39 Score=257.35 Aligned_cols=151 Identities=53% Similarity=0.861 Sum_probs=129.9
Q ss_pred EEEEEECCEEeeEEEEEEecCCCchhHHHHHHhhcCCCCcccCCCCccccCCEEEEeecCceEeeCCCCCCCCCCCc-cc
Q 027222 60 YFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFTLGDGRGGE-SI 138 (226)
Q Consensus 60 ~~~i~~~~~~~G~IvieL~~~~aP~~v~nF~~L~~g~~g~~~~~~~~~Y~g~~f~Rv~~~~~iq~Gd~~~~~~~~~~-~~ 138 (226)
||+|++++ .|+|+||||++.||++|+||++||+.+ +|+|+.|||++|+++||+|++......+.. ..
T Consensus 1 ~~~i~t~~--~G~i~ieL~~~~aP~~~~nF~~l~~~~----------~y~g~~f~ri~~~~~i~~G~~~~~~~~~~~~~~ 68 (155)
T PF00160_consen 1 FVDIETSG--LGRIVIELFGDEAPKTVENFLRLCTSG----------FYDGTKFHRIIPNFVIQGGDPTGNGGYGREDST 68 (155)
T ss_dssp EEEEEETT--EEEEEEEEETTTSHHHHHHHHHHHHTT----------SSTTEBEEEEETTTEEEESSTTTSSSSTSEEBT
T ss_pred CEEEEeCC--ccCEEEEEeCCCCcHHHHhhehhhccc----------ccCCceeecccccceeeeeeccCCCCccccccc
Confidence 78999866 999999999999999999999999744 899999999999999999998754431111 22
Q ss_pred cCCccccccc-ccccCCceEEEeeecC--CCCCcceeEEEccCCCCCCCCccEEEEEEcCHHHHHHHHhCCCCCCCcccc
Q 027222 139 FGESFADENF-KLKHTGPGVLSMANAG--PDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGEPKSK 215 (226)
Q Consensus 139 ~~~~~~~e~~-~~~h~~~G~l~~~~~~--~~~~~sqF~I~l~~~~~Ld~~~~VFGrVi~G~~vl~~I~~~~~~~~~P~~~ 215 (226)
.+..+++|.. ...++++|+|+|++.+ +++++|||||++.+.|+||++|+|||||++|||+|++|++.+++. +|.++
T Consensus 69 ~~~~~~~E~~~~~~~~~~G~v~~~~~~~~~~~~~sqF~I~l~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~-~p~~~ 147 (155)
T PF00160_consen 69 GGEPIPDEFNPSLLKHRRGLVSMARSGKDPNSNGSQFFITLSDAPHLDGKYTVFGRVIEGMDVLDKIEAGPTDE-RPKQD 147 (155)
T ss_dssp TBSCBSSSGBTTSSSSSTTEEEEEBSSSSTTEBSSEEEEESSCGGGGTTTSEEEEEEEEHHHHHHHHHTSBBTT-EBSST
T ss_pred CccccccccccccccccceeeeecccccCCCCCCceEEeeccCCCccccceeeeeEEehhHHHHHHHHCCCCCC-ccCCC
Confidence 3445777763 3333479999999975 888999999999999999999999999999999999999988777 99999
Q ss_pred eEEeeeee
Q 027222 216 VVISNSGE 223 (226)
Q Consensus 216 i~I~~cg~ 223 (226)
|+|.+||+
T Consensus 148 v~I~~cgv 155 (155)
T PF00160_consen 148 VTISSCGV 155 (155)
T ss_dssp EEEEEEEE
T ss_pred eEEEEeEC
Confidence 99999996
No 24
>KOG0884 consensus Similar to cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.1e-39 Score=242.51 Aligned_cols=142 Identities=47% Similarity=0.758 Sum_probs=131.2
Q ss_pred EeeEEEEEEecCCCchhHHHHHHhhcCCCCcccCCCCccccCCEEEEeecCceEeeCCCCCCCCCCCccccCCccccccc
Q 027222 69 PIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFTLGDGRGGESIFGESFADENF 148 (226)
Q Consensus 69 ~~G~IvieL~~~~aP~~v~nF~~L~~g~~g~~~~~~~~~Y~g~~f~Rv~~~~~iq~Gd~~~~~~~~~~~~~~~~~~~e~~ 148 (226)
..|+|.||||.+.+|++|+||+.+|..+ ||+++.|||-+|+|++|+||+. ..|.|+.++||.+|+||..
T Consensus 8 ~~gdikiev~~e~tpktce~~l~~~~~~----------~~n~~~~~~~~~~f~v~~~~~~-~tgrgg~siwg~~fede~~ 76 (161)
T KOG0884|consen 8 DVGDIKIEVFCERTPKTCENFLALCASD----------YYNGCIFHRNIKGFMVQTGDPT-HTGRGGNSIWGKKFEDEYS 76 (161)
T ss_pred ccCcEEEEEEecCChhHHHHHHHHhhhh----------hccceeecCCCCCcEEEeCCCC-CCCCCCccccCCcchHHHH
Confidence 3899999999999999999999999766 9999999999999999999998 6799999999999999855
Q ss_pred -ccccCCceEEEeeecCCCCCcceeEEEccCCCCCCCCccEEEEEEcCHHHHHHHHhCCCC--CCCcccceEEeee
Q 027222 149 -KLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQ--SGEPKSKVVISNS 221 (226)
Q Consensus 149 -~~~h~~~G~l~~~~~~~~~~~sqF~I~l~~~~~Ld~~~~VFGrVi~G~~vl~~I~~~~~~--~~~P~~~i~I~~c 221 (226)
-++|+.||+|+|++.+||+++|||||+.+..||||-+|+|||+||+|+|.|++|+..+.+ ..+|..++.|.+.
T Consensus 77 ~~lkh~~rg~vsmanngp~tn~sqffity~kq~hldmkytvfgkvidg~etldele~l~v~~ktyrpl~~~~ik~i 152 (161)
T KOG0884|consen 77 EYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGLETLDELEKLPVNEKTYRPLNDVHIKDI 152 (161)
T ss_pred HHHhhccceeEEcccCCCCCCCceEEEEecCCCccceeEeeeeeeccchhhHHHHhhcccCccccccchheeeeee
Confidence 489999999999999999999999999999999999999999999999999999988744 3688887777654
No 25
>cd00317 cyclophilin cyclophilin: cyclophilin-type peptidylprolyl cis- trans isomerases. This family contains eukaryotic, bacterial and archeal proteins which exhibit a peptidylprolyl cis- trans isomerases activity (PPIase, Rotamase) and in addition bind the immunosuppressive drug cyclosporin (CsA). Immunosuppression in vertebrates is believed to be the result of the cyclophilin A-cyclosporin protein drug complex binding to and inhibiting the protein-phosphatase calcineurin. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. Cyclophilins are a diverse family in terms of function and have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. This group contains human cyclophilin 40, a co-chaperone of the hsp90 chaperone system; human cyclophilin A, a chaperone in the HIV-1 infectious process and; human cyclophilin H, a component of the U4/U6 snRNP
Probab=100.00 E-value=2.4e-38 Score=250.10 Aligned_cols=140 Identities=60% Similarity=0.942 Sum_probs=124.9
Q ss_pred EeeEEEEEEecCCCchhHHHHHHhhcCCCCcccCCCCccccCCEEEEeecCceEeeCCCCCCCCCCCccccCCccccccc
Q 027222 69 PIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFTLGDGRGGESIFGESFADENF 148 (226)
Q Consensus 69 ~~G~IvieL~~~~aP~~v~nF~~L~~g~~g~~~~~~~~~Y~g~~f~Rv~~~~~iq~Gd~~~~~~~~~~~~~~~~~~~e~~ 148 (226)
..|+|+||||++.||++|+||++||+++ +|+|+.|||++|++++|+||+......+ ..++..+++|..
T Consensus 5 ~~G~i~IeL~~~~~P~~~~nF~~l~~~~----------~Y~~~~f~rv~~~~~iq~Gd~~~~~~~~--~~~~~~~~~E~~ 72 (146)
T cd00317 5 TKGRIVIELYGDEAPKTVENFLSLARGG----------FYDGTTFHRVIPGFMIQGGDPTGTGGGG--SGPGYKFPDENF 72 (146)
T ss_pred ccCcEEEEEcCCCChHHHHHHHHHHhcC----------CcCCCEEEEEeCCCeEEECCCCCCCCCC--CcCCCccCCccc
Confidence 3799999999999999999999999655 8999999999999999999987544322 345667888877
Q ss_pred ccc-cCCceEEEeeecCCCCCcceeEEEccCCCCCCCCccEEEEEEcCHHHHHHHHhCCCC-CCCcccceEEee
Q 027222 149 KLK-HTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQ-SGEPKSKVVISN 220 (226)
Q Consensus 149 ~~~-h~~~G~l~~~~~~~~~~~sqF~I~l~~~~~Ld~~~~VFGrVi~G~~vl~~I~~~~~~-~~~P~~~i~I~~ 220 (226)
... |+++|+|+|++.+++++++||||++.+.|+||++|+|||||++|||+|++|++.+++ +++|.++|+|.+
T Consensus 73 ~~~~~~~~G~v~~~~~~~~~~~sqF~Itl~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~~~~~~P~~~i~I~~ 146 (146)
T cd00317 73 PLKYHHRRGTLSMANAGPNTNGSQFFITTAPTPHLDGKHTVFGKVVEGMDVVDKIERGDTDENGRPIKPVTISD 146 (146)
T ss_pred cCcCcCCCcEEEEeeCCCCCcccEEEEECCCCcccCCCceEEEEEeCCHHHHHHHHcCCCCCCCcCcCceEEeC
Confidence 655 888999999999999999999999999999999999999999999999999998865 789999999974
No 26
>cd01924 cyclophilin_TLP40_like cyclophilin_TLP40_like: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) similar ot the Spinach thylakoid lumen protein TLP40. Compared to the archetypal cyclophilin Human cyclophilin A, these proteins have similar peptidylprolyl cis- trans isomerase activity and reduced affinity for cyclosporin A. Spinach TLP40 has been shown to have a dual function as a folding catalyst and regulator of dephosphorylation.
Probab=100.00 E-value=2e-37 Score=252.25 Aligned_cols=128 Identities=32% Similarity=0.524 Sum_probs=108.0
Q ss_pred EEeeEEEEEEecCCCchhHHHHHHhhcCCCCcccCCCCccccCCEEEEeecCceEeeCCCCCCCC---------------
Q 027222 68 KPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFTLGDG--------------- 132 (226)
Q Consensus 68 ~~~G~IvieL~~~~aP~~v~nF~~L~~g~~g~~~~~~~~~Y~g~~f~Rv~~~~~iq~Gd~~~~~~--------------- 132 (226)
|+.|+|+||||++.||+||+||++||+. +||+++.||||+++|||||||+...+.
T Consensus 4 T~~G~i~ieL~~~~aP~t~~NF~~L~~~----------g~Ydg~~FhRVi~~fviQgGdp~~~~~~~~~~~~~~~~~~p~ 73 (176)
T cd01924 4 TDNGTITIVLDGYNAPVTAGNFVDLVER----------GFYDGMEFHRVEGGFVVQTGDPQGKNPGFPDPETGKSRTIPL 73 (176)
T ss_pred cccceEEEEEcCCCCCHHHHHHHHHHHh----------CCcCCCEEEEecCCcEEEecCCCCCCCCcccccccccccccc
Confidence 4589999999999999999999999953 399999999999999999999874311
Q ss_pred -----CCCccccCCcc-----cccccccccCCceEEEeeecC--CCCCcceeEEEcc-------CCCCCCCCccEEEEEE
Q 027222 133 -----RGGESIFGESF-----ADENFKLKHTGPGVLSMANAG--PDTNGSQFFITTV-------ITSWLDGRHVVFGKVL 193 (226)
Q Consensus 133 -----~~~~~~~~~~~-----~~e~~~~~h~~~G~l~~~~~~--~~~~~sqF~I~l~-------~~~~Ld~~~~VFGrVi 193 (226)
..+.++++..+ .+++..+.|+.+|+|+|++++ +++++|||||+++ +.|+||++|+|||||+
T Consensus 74 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laMa~~~~~~ns~~SQFfI~~~~~~~~~~~~~~Ldg~ytVFG~Vv 153 (176)
T cd01924 74 EIKPEGQKQPVYGKTLEEAGRYDEQPVLPFNAFGAIAMARTEFDPNSASSQFFFLLKDNELTPSRNNVLDGRYAVFGYVT 153 (176)
T ss_pred eecccCCCCCccCcccccccccccccccccCCCCeEEEccCCCCCCCccceEEEEeccccccCCCCCccCCCceEEEEEe
Confidence 11223444433 245566788889999999977 7999999999998 7899999999999999
Q ss_pred cCHHHHHHHHhC
Q 027222 194 SGMDVVRKIEAE 205 (226)
Q Consensus 194 ~G~~vl~~I~~~ 205 (226)
+|||||++|+..
T Consensus 154 eG~dvl~~I~~g 165 (176)
T cd01924 154 DGLDILRELKVG 165 (176)
T ss_pred cCHHHHHhhcCC
Confidence 999999999754
No 27
>KOG0885 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-35 Score=256.88 Aligned_cols=156 Identities=40% Similarity=0.667 Sum_probs=142.1
Q ss_pred cccCcEEEEEEEECCEEeeEEEEEEecCCCchhHHHHHHhhcCCCCcccCCCCccccCCEEEEeecCceEeeCCCCCCCC
Q 027222 53 EKVTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFTLGDG 132 (226)
Q Consensus 53 ~~~~~~v~~~i~~~~~~~G~IvieL~~~~aP~~v~nF~~L~~g~~g~~~~~~~~~Y~g~~f~Rv~~~~~iq~Gd~~~~~~ 132 (226)
|+.+.+|.+..+ .|+|.||||+..||++|.||++||..+ ||+|+.|||++|+|.+||||+. ++|
T Consensus 9 P~ttgkvil~TT-----~G~I~iELW~kE~P~acrnFiqKOGeg----------yy~nt~fhrlvp~f~~Qggdp~-~~g 72 (439)
T KOG0885|consen 9 PPTTGKVILKTT-----KGDIDIELWAKECPKACRNFIQLCLEG----------YYDNTEFHRLVPGFLVQGGDPT-GTG 72 (439)
T ss_pred CCccceEEEEec-----cCceeeeehhhhhhHHHHHHHHHHHhc----------cccCceeeeeccchhcccCCCC-CCC
Confidence 556788887766 999999999999999999999999544 9999999999999999999998 889
Q ss_pred CCCccccCCccccccc-ccccCCceEEEeeecCCCCCcceeEEEccCCCCCCCCccEEEEEE-cCHHHHHHHHhCCCC-C
Q 027222 133 RGGESIFGESFADENF-KLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVL-SGMDVVRKIEAEGRQ-S 209 (226)
Q Consensus 133 ~~~~~~~~~~~~~e~~-~~~h~~~G~l~~~~~~~~~~~sqF~I~l~~~~~Ld~~~~VFGrVi-~G~~vl~~I~~~~~~-~ 209 (226)
+||.++||..|.+|.. .+++.++|+|+|++.+.+.||||||+||+++|+||++|++||+|+ +-+-.+-+|..+..+ +
T Consensus 73 tGgesiyg~~fadE~h~Rlrf~rrGlvgmana~~~~ngsqFfftl~~~~el~nk~tiFGKVtGdtIYn~lri~e~eida~ 152 (439)
T KOG0885|consen 73 TGGESIYGRPFADEFHPRLRFNRRGLVGMANAGNDDNGSQFFFTLGDTPELNNKHTIFGKVTGDTIYNMLRISEVEIDAD 152 (439)
T ss_pred CCccccccccchhhcCcceeeeccceeeecccCCCCCCceEEEEecCChHhcccCceeeeecchhhhhhhhhcccccccc
Confidence 9999999999999854 588889999999999999999999999999999999999999998 677778888877654 7
Q ss_pred CCcccceEEeeeeee
Q 027222 210 GEPKSKVVISNSGEM 224 (226)
Q Consensus 210 ~~P~~~i~I~~cg~l 224 (226)
.+|..+-.|.+|-++
T Consensus 153 ~Rp~~p~kI~s~EV~ 167 (439)
T KOG0885|consen 153 DRPVDPPKIKSVEVL 167 (439)
T ss_pred cCCCCccceeeeEee
Confidence 899999999999887
No 28
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-32 Score=237.72 Aligned_cols=147 Identities=42% Similarity=0.660 Sum_probs=132.6
Q ss_pred EEeeEEEEEEecCCCchhHHHHHHhhcCCCCcccCCCCccccCCEEEEeecCceEeeCCCCCCCCCCCccccCCc-----
Q 027222 68 KPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFTLGDGRGGESIFGES----- 142 (226)
Q Consensus 68 ~~~G~IvieL~~~~aP~~v~nF~~L~~g~~g~~~~~~~~~Y~g~~f~Rv~~~~~iq~Gd~~~~~~~~~~~~~~~~----- 142 (226)
|++|+|+|.||-+.+|.+|.||++|| |..||+.+.||-|+.+|++|.|||+ +.|.||.++|+.-
T Consensus 7 TtlGDlvIDLf~~erP~~clNFLKLC----------k~KYYN~clfh~vq~~f~aQTGDPt-GtG~GG~si~~~lyG~q~ 75 (479)
T KOG0415|consen 7 TTLGDLVIDLFVKERPRTCLNFLKLC----------KIKYYNFCLFHTVQRDFTAQTGDPT-GTGDGGESIYGVLYGEQA 75 (479)
T ss_pred eecccEEeeeecccCcHHHHHHHHHH----------hHhhcccceeeeccccceeecCCCC-CCCCCcceeeeecccccc
Confidence 34999999999999999999999999 5559999999999999999999998 6899999998643
Q ss_pred --cccc-ccccccCCceEEEeeecCCCCCcceeEEEccCC-CCCCCCccEEEEEEcCHHHHHHHHh-CCCCCCCcccceE
Q 027222 143 --FADE-NFKLKHTGPGVLSMANAGPDTNGSQFFITTVIT-SWLDGRHVVFGKVLSGMDVVRKIEA-EGRQSGEPKSKVV 217 (226)
Q Consensus 143 --~~~e-~~~~~h~~~G~l~~~~~~~~~~~sqF~I~l~~~-~~Ld~~~~VFGrVi~G~~vl~~I~~-~~~~~~~P~~~i~ 217 (226)
|..| ...++|.+.|+|+|++.+.|.+||||||||+++ ..||++|+|||+|.+|||+|.+|+. ..+++.+|.++|+
T Consensus 76 rffeaE~~p~l~Hsk~G~vsmvs~g~n~~gSQF~iTlgenLdyLDg~htvfGqV~EG~dtl~kiNea~vD~~~rPykdIR 155 (479)
T KOG0415|consen 76 RFFEAEFLPKLKHSKMGTVSMVSAGENLNGSQFFITLGENLDYLDGKHTVFGQVAEGFDTLTKINEAIVDPKNRPYKDIR 155 (479)
T ss_pred hhhhhhhcccccccccceEEeecCCcccccceEEEEccccccccccccceeeehhhhHHHHHHHHHHhcCCCCCccccee
Confidence 3444 456899999999999999999999999999985 6999999999999999999999975 5678899999999
Q ss_pred Eeeeeeec
Q 027222 218 ISNSGEMA 225 (226)
Q Consensus 218 I~~cg~l~ 225 (226)
|...=+|+
T Consensus 156 I~HTiiLd 163 (479)
T KOG0415|consen 156 IKHTIILD 163 (479)
T ss_pred eeeeEEec
Confidence 99987775
No 29
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.18 E-value=4.9e-06 Score=75.53 Aligned_cols=139 Identities=24% Similarity=0.262 Sum_probs=110.5
Q ss_pred EEEEEEecCCCchhHHHHHHhhcCCCCcccCCCCccccCCEEEEeecCceEeeCCCCCCCCCCC----ccccC-Ccccc-
Q 027222 72 RIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFTLGDGRGG----ESIFG-ESFAD- 145 (226)
Q Consensus 72 ~IvieL~~~~aP~~v~nF~~L~~g~~g~~~~~~~~~Y~g~~f~Rv~~~~~iq~Gd~~~~~~~~~----~~~~~-~~~~~- 145 (226)
.|.|+++.+-.|.-++-|.++|. .+++++..|.||...+++|.||.......+| ++..+ ..+++
T Consensus 113 ~IAVs~~~sg~i~VvD~~~d~~q----------~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~ 182 (558)
T KOG0882|consen 113 LIAVSLFKSGKIFVVDGFGDFCQ----------DGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRT 182 (558)
T ss_pred eEEeecccCCCcEEECCcCCcCc----------cceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccc
Confidence 89999999999999999999993 3499999999999999999998664433232 11111 12333
Q ss_pred -cccccccCCceEEEeeecCCCCCcceeEEEccCCCCCCCCccEEEEEEcCHHHHHHHHhCCC-CCCCcccceEEeee
Q 027222 146 -ENFKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGR-QSGEPKSKVVISNS 221 (226)
Q Consensus 146 -e~~~~~h~~~G~l~~~~~~~~~~~sqF~I~l~~~~~Ld~~~~VFGrVi~G~~vl~~I~~~~~-~~~~P~~~i~I~~c 221 (226)
.++.++|. .-++..........+.+|.+.-.+.+-+..+..|||++.+|-++++.|++..+ ...+|+.++.|.+.
T Consensus 183 ~l~~~~K~e-TdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~V 259 (558)
T KOG0882|consen 183 NLNFELKHE-TDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHV 259 (558)
T ss_pred ccccccccc-chhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhcccccccccee
Confidence 46678887 55777777766777899999999999999999999999999999999988664 45788888887654
No 30
>TIGR03268 methan_mark_3 putative methanogenesis marker protein 3. A single member of this protein family is found in each of the first ten complete genome sequences of archaeal methanogens, and nowhere else. This protein family was detected by the method of partial phylogenetic profiling (see Haft, et al., 2006). The functions of proteins in this family are unknown, but their role is likely one essential to methanogenesis.
Probab=96.84 E-value=0.0052 Score=56.97 Aligned_cols=103 Identities=20% Similarity=0.324 Sum_probs=65.1
Q ss_pred eEEEEEEecCCCchhHHHHHHhhcCCCCcccCCCCccccCCEEEEeecCceEeeCCCCCCCCCCCccccCCccccccccc
Q 027222 71 GRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFTLGDGRGGESIFGESFADENFKL 150 (226)
Q Consensus 71 G~IvieL~~~~aP~~v~nF~~L~~g~~g~~~~~~~~~Y~g~~f~Rv~~~~~iq~Gd~~~~~~~~~~~~~~~~~~~e~~~~ 150 (226)
-.+.+||.+ .+|.++++|+.+...+. + .+.+...-|. +.....+...+.|+...
T Consensus 201 Ty~evE~~~-~~p~s~EH~la~~~~G~----------~---~Vd~~tsTfi------------~d~~L~g~~~p~En~~~ 254 (503)
T TIGR03268 201 TYVEVELDP-NAPVSVEHFLALMEDGT----------F---RVDYRTSTFI------------SDDSLRGLDKPEENIEK 254 (503)
T ss_pred EEEEEEEcC-CCChhHHHHHHHHhCCe----------E---EEeeeecceE------------ecccccCccCCccccCc
Confidence 356778765 56999999999995541 1 0111111111 11122244556666554
Q ss_pred ccCCceEEEeeecCCCCCcceeEEEccCCCCCCCCccEEEEEEcCHHHHHHHHh
Q 027222 151 KHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEA 204 (226)
Q Consensus 151 ~h~~~G~l~~~~~~~~~~~sqF~I~l~~~~~Ld~~~~VFGrVi~G~~vl~~I~~ 204 (226)
+ .+|+|++.+.|.+. -..||-..+-+. .-.|+|+|||+.|||+++--+.
T Consensus 255 R--~rGtVTVRn~G~G~--G~VYIYredr~s-s~sHtvVG~V~~GiELid~a~~ 303 (503)
T TIGR03268 255 R--RRGAVTVRNSGVGE--GRVYIYREDRPS-SLSHNVVGHVTRGIELIDIAQE 303 (503)
T ss_pred c--cceeEEEEeeccCc--eeEEEEcCCCCC-CcccceeEEEecceeeeecccC
Confidence 3 48999999987553 468998766542 2359999999999999875543
No 31
>PRK00969 hypothetical protein; Provisional
Probab=96.80 E-value=0.0047 Score=57.37 Aligned_cols=103 Identities=21% Similarity=0.359 Sum_probs=65.4
Q ss_pred eEEEEEEecCCCchhHHHHHHhhcCCCCcccCCCCccccCCEEEEeecCceEeeCCCCCCCCCCCccccCCccccccccc
Q 027222 71 GRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFTLGDGRGGESIFGESFADENFKL 150 (226)
Q Consensus 71 G~IvieL~~~~aP~~v~nF~~L~~g~~g~~~~~~~~~Y~g~~f~Rv~~~~~iq~Gd~~~~~~~~~~~~~~~~~~~e~~~~ 150 (226)
-.+.+||.++ ||.++++|+.+...+. + .+.+...-|. +..+..+...+.|+...
T Consensus 204 Ty~eve~~~~-~p~s~EH~la~~~~G~----------f---~Vd~~tstfI------------~d~~L~g~~~p~En~~~ 257 (508)
T PRK00969 204 TYVEVELDPG-APKSVEHFLALLEDGT----------F---EVDFETSTFI------------ADDRLQGLKIPEENFEP 257 (508)
T ss_pred EEEEEEEcCC-CCchHHHHHHHHhCCe----------E---EEeeeecceE------------eeccccCccCCccccCc
Confidence 3567788755 5999999999996541 1 0111111111 11122244556676554
Q ss_pred ccCCceEEEeeecCCCCCcceeEEEccCCCCCCCCccEEEEEEcCHHHHHHHHh
Q 027222 151 KHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEA 204 (226)
Q Consensus 151 ~h~~~G~l~~~~~~~~~~~sqF~I~l~~~~~Ld~~~~VFGrVi~G~~vl~~I~~ 204 (226)
+ .+|+|++.+.|.+. -..||-..+-+. .-.|+|+|+|++|||+++--+.
T Consensus 258 R--~~GtVTVRt~G~g~--G~vYIyredr~s-s~sHtvVG~V~~GiELi~~a~~ 306 (508)
T PRK00969 258 R--RRGTVTVRTAGVGV--GKVYIYREDRPS-SLSHTVVGRVTHGIELIDFAKE 306 (508)
T ss_pred c--ccceEEEEeeccCc--eeEEEECCCCCC-CccceeEEEEecceeeeecccC
Confidence 4 38999999987553 468998866542 2359999999999999875443
No 32
>TIGR03268 methan_mark_3 putative methanogenesis marker protein 3. A single member of this protein family is found in each of the first ten complete genome sequences of archaeal methanogens, and nowhere else. This protein family was detected by the method of partial phylogenetic profiling (see Haft, et al., 2006). The functions of proteins in this family are unknown, but their role is likely one essential to methanogenesis.
Probab=96.61 E-value=0.017 Score=53.68 Aligned_cols=114 Identities=20% Similarity=0.325 Sum_probs=60.1
Q ss_pred EEEEEEecCCCchhHHHHHHhhcCCCCcccCCCCccccCCEEEEeecCceEeeCCCCCCCCCCCccccCCcccccccccc
Q 027222 72 RIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFTLGDGRGGESIFGESFADENFKLK 151 (226)
Q Consensus 72 ~IvieL~~~~aP~~v~nF~~L~~g~~g~~~~~~~~~Y~g~~f~Rv~~~~~iq~Gd~~~~~~~~~~~~~~~~~~~e~~~~~ 151 (226)
-|.|+||.+.||+++..|+++. |-+- -.-| -..+|=..++.++.=|+.. +...+.+||.+-.
T Consensus 376 vi~IeLydd~AP~s~~yFRk~t-GL~~-~~VG------~L~v~F~~~d~~mFk~~~~----------~~k~LiPEN~P~~ 437 (503)
T TIGR03268 376 VIEIELYDDNAPRSVWYFRKFT-GLKT-KPVG------RLPVHFAFKEMIMFKGNKE----------LAKGLIPENTPED 437 (503)
T ss_pred EEEEEEcccCCchHHHHHHHhc-CCcc-cccc------eeEEEEEeCCeeEeccCch----------hccccCCCCCCCC
Confidence 5889999999999999999986 1110 0001 1233333444333222222 1222333444433
Q ss_pred cCCceEEEeeecCCCCCcceeEEE------ccCCC-CCCCCccEEEEEEcCHHHHHHHHhC
Q 027222 152 HTGPGVLSMANAGPDTNGSQFFIT------TVITS-WLDGRHVVFGKVLSGMDVVRKIEAE 205 (226)
Q Consensus 152 h~~~G~l~~~~~~~~~~~sqF~I~------l~~~~-~Ld~~~~VFGrVi~G~~vl~~I~~~ 205 (226)
....|.+++-|......| -.=|- +++.. .+++ -.++|||++++|.|+++..+
T Consensus 438 ~V~ag~IgvTN~a~k~~G-~IGVRl~d~defGPTGE~F~g-TNIiG~Vv~~~e~Lk~~KeG 496 (503)
T TIGR03268 438 KVEAGVIGVTNQACKHVG-MIGVRLEDSDEFGPTGEPFSG-TNIIGRVVEGMERLKGLKEG 496 (503)
T ss_pred ccccceEeeechhhhcCc-eEEEEccCCcccCCCCCCccC-cceEEEecCChhHhcccccC
Confidence 444566666553211111 00111 23332 4554 45669999999999988763
No 33
>COG4070 Predicted peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=96.31 E-value=0.013 Score=52.92 Aligned_cols=102 Identities=25% Similarity=0.388 Sum_probs=65.4
Q ss_pred eeEEEEEEecCCCchhHHHHHHhhcCCCCcccCCCCccccCCEEEEee--cCceEeeCCCCCCCCCCCccccCCcccccc
Q 027222 70 IGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRII--PSFMIQGGDFTLGDGRGGESIFGESFADEN 147 (226)
Q Consensus 70 ~G~IvieL~~~~aP~~v~nF~~L~~g~~g~~~~~~~~~Y~g~~f~Rv~--~~~~iq~Gd~~~~~~~~~~~~~~~~~~~e~ 147 (226)
.-.+.+||.++ +|+++++|++|...+. .||- .|-.+ +..+....+.+.||
T Consensus 202 fTy~eve~s~n-sP~saEH~lalmedG~----------------lri~~~tntfi-----------s~~~lq~~~~~~en 253 (512)
T COG4070 202 FTYFEVELSRN-SPKSAEHFLALMEDGT----------------LRIDVTTNTFI-----------SDDTLQEEKVPEEN 253 (512)
T ss_pred EEEEEEEeCCC-CchhHHHHHHHhhcce----------------EEEEEecccee-----------eccccccccCChhh
Confidence 34577888764 5999999999984331 1221 12111 11222244566777
Q ss_pred cccccCCceEEEeeecCCCCCcceeEEEccCCCCCCCCccEEEEEEcCHHHHHHHHh
Q 027222 148 FKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEA 204 (226)
Q Consensus 148 ~~~~h~~~G~l~~~~~~~~~~~sqF~I~l~~~~~Ld~~~~VFGrVi~G~~vl~~I~~ 204 (226)
+.++. +|.+++.+.+.++ ..-||.--+-+.- -.|.|+|||++|||+++--+.
T Consensus 254 ~d~Re--rG~iTvRn~Gvge--GrvYIyRedR~ss-~sHnvVGrV~eGiELid~a~e 305 (512)
T COG4070 254 FDLRE--RGAITVRNVGVGE--GRVYIYREDRPSS-LSHNVVGRVIEGIELIDLAEE 305 (512)
T ss_pred hhhhh--cceEEEEeeeccc--ceEEEEecCCCCc-cccceeeeeecceEEEEeccc
Confidence 66554 7999999976543 4578877554322 258999999999999875544
No 34
>PRK00969 hypothetical protein; Provisional
Probab=96.12 E-value=0.044 Score=51.08 Aligned_cols=113 Identities=19% Similarity=0.278 Sum_probs=60.4
Q ss_pred EEEEEEecCCCchhHHHHHHhhcCCCCcccCCCCccccCCEEEEeecCceEeeCCCCCCCCCCCccccCCcccccccccc
Q 027222 72 RIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFTLGDGRGGESIFGESFADENFKLK 151 (226)
Q Consensus 72 ~IvieL~~~~aP~~v~nF~~L~~g~~g~~~~~~~~~Y~g~~f~Rv~~~~~iq~Gd~~~~~~~~~~~~~~~~~~~e~~~~~ 151 (226)
-|.||||.+.||+++.-|+++. |-+- -.-| -..+|=..++.++--|+... ...+.+||..-.
T Consensus 379 vi~IeLydd~AP~s~~yFR~~t-GL~~-~~VG------~L~v~F~~~d~~lFk~~~~~----------~k~liPEN~P~~ 440 (508)
T PRK00969 379 LIEIELYDDKAPRTVWYFRKVT-GLKT-KPVG------KLPVYFKYEDTYLFKGNIEY----------AKGLLPENTPED 440 (508)
T ss_pred EEEEEEcCcCCchHHHHHHHhc-CCcc-cccc------eeEEEEEeCCeEEEccChhh----------ccccCCCCCCCC
Confidence 5899999999999999999987 1110 0001 12333344554443333221 222334444444
Q ss_pred cCCceEEEeeecCCCCCcceeEEE------ccCCC-CCCCCccEEEEEEcCHHHHHHHHhC
Q 027222 152 HTGPGVLSMANAGPDTNGSQFFIT------TVITS-WLDGRHVVFGKVLSGMDVVRKIEAE 205 (226)
Q Consensus 152 h~~~G~l~~~~~~~~~~~sqF~I~------l~~~~-~Ld~~~~VFGrVi~G~~vl~~I~~~ 205 (226)
....|.+++-|......| -.=|- +++.. .+++ -.++|||+ ++|-|+++...
T Consensus 441 ~V~ag~IgvTN~a~k~~G-~iGVR~~d~d~fGPTGE~F~g-TNIIGrVv-~~e~Lk~lKeG 498 (508)
T PRK00969 441 KVKAGEIGVTNMAAKYKG-MIGVRLSDNDEFGPTGEPFEG-TNIIGRVV-NLEKLKKLKEG 498 (508)
T ss_pred ccccceEeeechhhhcCc-eEEEEccCCcccCCCCCCccC-ceeEEEec-ChHHhcccccC
Confidence 444566665553211111 00111 23332 3444 45779999 99999998764
No 35
>COG4070 Predicted peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=95.71 E-value=0.029 Score=50.74 Aligned_cols=22 Identities=27% Similarity=0.421 Sum_probs=20.5
Q ss_pred EEEEEEecCCCchhHHHHHHhh
Q 027222 72 RIVMGLFGKAVPKTVENFRALC 93 (226)
Q Consensus 72 ~IvieL~~~~aP~~v~nF~~L~ 93 (226)
-|.||||.+.||+++..|+++.
T Consensus 377 iieIELyed~APrSv~yFRr~t 398 (512)
T COG4070 377 IIEIELYEDRAPRSVWYFRRST 398 (512)
T ss_pred EEEEEecCCCCchhhHHHHhhc
Confidence 4899999999999999999886
No 36
>PF12903 DUF3830: Protein of unknown function (DUF3830); InterPro: IPR024532 This is a family of bacterial and archaeal proteins. The structure of one of family members, A0JVT3 from SWISSPROT, has been characterised and shown to contain a cyclophilin-like fold.; PDB: 3KOP_B.
Probab=94.45 E-value=0.36 Score=38.17 Aligned_cols=108 Identities=19% Similarity=0.156 Sum_probs=55.6
Q ss_pred EEEEEEecCCCchhHHHHHHhhcCCCCcccCCCCccccCCEEEEeecC--ceEeeCCCCCCCCCCCccccCCcccccccc
Q 027222 72 RIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPS--FMIQGGDFTLGDGRGGESIFGESFADENFK 149 (226)
Q Consensus 72 ~IvieL~~~~aP~~v~nF~~L~~g~~g~~~~~~~~~Y~g~~f~Rv~~~--~~iq~Gd~~~~~~~~~~~~~~~~~~~e~~~ 149 (226)
.++.+|..|.||+||+.|.+.- =|.+..+|-..-+ -++.-++.. ....+.||..
T Consensus 9 ~~~A~l~~d~AP~Tcaa~~~~L-------------P~~~~~~HarwSG~ei~~~l~~~~-----------~~~~~~EN~T 64 (147)
T PF12903_consen 9 SFTARLLDDKAPKTCAAFWEAL-------------PLKGKVIHARWSGEEIWIPLPDFD-----------PFEPGRENHT 64 (147)
T ss_dssp EEEEEE-TTTSHHHHHHHHHH---------------EEEE-EE-SSSSSEEEEEEE--S-----------SS---S-SEE
T ss_pred EEEEEEcccCChHHHHHHHHhC-------------CCCCcEEEEEEECcEEEEECCCcC-----------cCCCCCCcCc
Confidence 5789999999999999999987 3666666655544 344445433 0112234433
Q ss_pred cccCCceEEEee--e-cCC--CCC-cceeEEEccCCCCC-CCC-----ccEEEEEEcCHHHHHHHHh
Q 027222 150 LKHTGPGVLSMA--N-AGP--DTN-GSQFFITTVITSWL-DGR-----HVVFGKVLSGMDVVRKIEA 204 (226)
Q Consensus 150 ~~h~~~G~l~~~--~-~~~--~~~-~sqF~I~l~~~~~L-d~~-----~~VFGrVi~G~~vl~~I~~ 204 (226)
.+-.+|-|.+. . ... +.. -++.-|..+..+-+ ..+ -.+|++|++|.|-|.++-+
T Consensus 65 -~~P~pGdi~~~y~~~~~~~~~pg~~~e~~i~yg~g~~~f~~~~G~l~GN~FatI~egle~la~~~~ 130 (147)
T PF12903_consen 65 -VTPIPGDILLYYEPGSAWGGNPGGISETEIFYGYGNLLFASKMGWLPGNHFATITEGLEELAEACR 130 (147)
T ss_dssp -SS--TTEEEEE-----------E-EEEEEEE-SSS---EETTTEE--EEEEEEEEESHHHHHHHHH
T ss_pred -ccCCCCcEEEEecCCccccCCCcceEEEEEEEeeCceEecCCccccceeEEEEEcCCHHHHHHHHH
Confidence 23336777666 1 111 111 24555555443321 111 4689999999998887754
No 37
>COG2164 Uncharacterized conserved protein [Function unknown]
Probab=81.07 E-value=1.1 Score=33.19 Aligned_cols=100 Identities=17% Similarity=0.164 Sum_probs=54.9
Q ss_pred eeEEEEEEecCCCchhHHHHHHhhcCCCCcccCCCCccccCCEEEEeecCceEeeCCCCCCCCCCCccccCCcccccccc
Q 027222 70 IGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFTLGDGRGGESIFGESFADENFK 149 (226)
Q Consensus 70 ~G~IvieL~~~~aP~~v~nF~~L~~g~~g~~~~~~~~~Y~g~~f~Rv~~~~~iq~Gd~~~~~~~~~~~~~~~~~~~e~~~ 149 (226)
.|.-++||+.+. |.+|..+.+-. .|. +-...||+-.+.+..-. -.+ .||..
T Consensus 12 sg~c~~eL~ee~-pE~vr~i~d~l------------------Pie----s~an~WgeEiYF~tpv~----v~k--~ENp~ 62 (126)
T COG2164 12 SGHCTGELDEEN-PESVRRIYDSL------------------PIE----SRANLWGEEIYFDTPVD----VDK--YENPS 62 (126)
T ss_pred cceEEEEccccC-hHHHHHHHHhC------------------Cch----hhhhhccceEEeecccc----hhh--ccCcc
Confidence 588999999888 99998865443 221 11222333221110000 000 12211
Q ss_pred cccCCceEEEeeecCCCCCcceeEEEccCCCCCCCC------ccEEEEEEcCHHHHHHHHh
Q 027222 150 LKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGR------HVVFGKVLSGMDVVRKIEA 204 (226)
Q Consensus 150 ~~h~~~G~l~~~~~~~~~~~sqF~I~l~~~~~Ld~~------~~VFGrVi~G~~vl~~I~~ 204 (226)
.....|-++....+. -..+.++..|--|.+ ..|+||++++||.|..+..
T Consensus 63 -dvve~GDv~YWpPGk-----AlClFFGkTpmsddkiqPaSaVNvIGrIv~~lE~lk~v~d 117 (126)
T COG2164 63 -DVVEPGDVSYWPPGK-----ALCLFFGKTPMSDDKIQPASAVNVIGRIVKNLELLKSVDD 117 (126)
T ss_pred -cccCcccccccCCCc-----EEEEEecCCcCcccccCccchHHHHHHHHhhHHhhhcccC
Confidence 112245555444332 245556777766665 3589999999999988864
No 38
>PF04126 Cyclophil_like: Cyclophilin-like; InterPro: IPR007256 Proteins of this family have no known function.; PDB: 2KA0_A 1ZX8_C 2NNZ_A.
Probab=74.57 E-value=20 Score=27.15 Aligned_cols=46 Identities=15% Similarity=0.216 Sum_probs=29.3
Q ss_pred CceEEEeeecCCCCCcceeEEEccCCC-------CCCCCccEEEEEEcCHHHHHHHHh
Q 027222 154 GPGVLSMANAGPDTNGSQFFITTVITS-------WLDGRHVVFGKVLSGMDVVRKIEA 204 (226)
Q Consensus 154 ~~G~l~~~~~~~~~~~sqF~I~l~~~~-------~Ld~~~~VFGrVi~G~~vl~~I~~ 204 (226)
..|-|+....+.+ |-|-.++.| .+-....++|||.+|.+.++++..
T Consensus 61 ~~GDi~Yw~pg~~-----l~ifyg~~p~S~~~~~~~~~~v~~lG~i~~~~~~l~~~~~ 113 (120)
T PF04126_consen 61 EAGDIAYWPPGGA-----LAIFYGDTPISEGGEIRPASPVNVLGRIVSDLENLKEVKG 113 (120)
T ss_dssp -TTEEEEECCCTE-----EEEESS--TT--TTSB--SSSEEEEEEEEC-GGGGGG--T
T ss_pred cCceEEEeCCCCE-----EEEEecCcccccccccccCCcceEEEEECCCHHHHhhCCC
Confidence 4788887665433 777777774 455668999999999999988864
No 39
>PF15240 Pro-rich: Proline-rich
Probab=47.92 E-value=16 Score=29.78 Aligned_cols=16 Identities=25% Similarity=0.266 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHhhhc
Q 027222 13 LWALVLFLTLAFIQNR 28 (226)
Q Consensus 13 ~~~l~~~~~~a~~~~~ 28 (226)
|++||.++|+|+.++.
T Consensus 2 LlVLLSvALLALSSAQ 17 (179)
T PF15240_consen 2 LLVLLSVALLALSSAQ 17 (179)
T ss_pred hhHHHHHHHHHhhhcc
Confidence 4455555566665554
No 40
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=44.20 E-value=12 Score=33.85 Aligned_cols=50 Identities=18% Similarity=0.195 Sum_probs=34.4
Q ss_pred CceEEEeeecCCCCCcceeEEEccCCCCCCCCccEEEEEE-cCHHHHHHHHh
Q 027222 154 GPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVL-SGMDVVRKIEA 204 (226)
Q Consensus 154 ~~G~l~~~~~~~~~~~sqF~I~l~~~~~Ld~~~~VFGrVi-~G~~vl~~I~~ 204 (226)
.+|.|.+.|.....-..|.=|++.+.|. |++..|+|+|. +-+.+|+-|..
T Consensus 299 ~~G~ItIdN~~ygRY~GElQI~~~dlp~-d~rvNViG~V~~~d~~LLd~I~~ 349 (357)
T PF05913_consen 299 KRGDITIDNENYGRYKGELQIVKKDLPA-DERVNVIGRVDEEDLPLLDYIKP 349 (357)
T ss_dssp -TTEEEEE-GGGGGGTT-EEEESS-B----TTEEEEEEE-GGGGGGGGG--T
T ss_pred cCceEEEeCCCccccccEEEEEcccCCC-CCCeeEEEEECHHHHHHHHhcCC
Confidence 4899999997766667899999999985 88999999999 56888888864
No 41
>PF08415 NRPS: Nonribosomal peptide synthase; InterPro: IPR013624 This domain is found in bacterial non-ribosomal peptide synthetases (NRPS). NRPS are megaenzymes organised as iterative modules, one for each amino acid to be built into the peptide product []. NRPS modules are involved in epothilone biosynthesis (EpoB), myxothiazol biosynthesis (MtaC and MtaD), and other functions []. The NRPS domain tends to be found together with the condensation domain (IPR001242 from INTERPRO) and the phosphopantetheine binding domain (IPR006163 from INTERPRO).
Probab=37.01 E-value=36 Score=22.08 Aligned_cols=27 Identities=22% Similarity=0.409 Sum_probs=20.1
Q ss_pred EcCHHHHHHHHhCCCCCCCcccceEEee
Q 027222 193 LSGMDVVRKIEAEGRQSGEPKSKVVISN 220 (226)
Q Consensus 193 i~G~~vl~~I~~~~~~~~~P~~~i~I~~ 220 (226)
++|.||++++.+. .......-||..++
T Consensus 4 ~sGv~vlRel~r~-~~~~~~~~PVVFTS 30 (58)
T PF08415_consen 4 FSGVEVLRELARR-GGGRAAVMPVVFTS 30 (58)
T ss_pred ccHHHHHHHHHHh-cCCCCCcCCEEEeC
Confidence 4799999999987 45556666777665
No 42
>PF11314 DUF3117: Protein of unknown function (DUF3117); InterPro: IPR021465 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=36.52 E-value=27 Score=22.25 Aligned_cols=27 Identities=19% Similarity=0.322 Sum_probs=20.5
Q ss_pred cEEEEEEEECCEEeeEEEEEEecCCCchh
Q 027222 57 HKVYFDIEVGGKPIGRIVMGLFGKAVPKT 85 (226)
Q Consensus 57 ~~v~~~i~~~~~~~G~IvieL~~~~aP~~ 85 (226)
..+.+.+-.++ -||+++||.++.|-.-
T Consensus 17 R~ivmRvPleG--GGRLVvEl~~~Ea~~L 43 (51)
T PF11314_consen 17 RGIVMRVPLEG--GGRLVVELNPDEAKEL 43 (51)
T ss_pred ceEEEEEecCC--CcEEEEEeCHHHHHHH
Confidence 45778887765 6899999998876443
No 43
>PRK07718 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=30.69 E-value=2.2e+02 Score=22.02 Aligned_cols=9 Identities=11% Similarity=0.014 Sum_probs=4.8
Q ss_pred EEEEEEecC
Q 027222 72 RIVMGLFGK 80 (226)
Q Consensus 72 ~IvieL~~~ 80 (226)
.+.+++..+
T Consensus 68 ~i~l~~~~~ 76 (142)
T PRK07718 68 QFKIETDSK 76 (142)
T ss_pred EEEEEECCH
Confidence 356666543
No 44
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=30.67 E-value=3.1e+02 Score=22.62 Aligned_cols=25 Identities=28% Similarity=0.559 Sum_probs=18.1
Q ss_pred eeEEEEEEec-----CCCchhHHHHHHhhc
Q 027222 70 IGRIVMGLFG-----KAVPKTVENFRALCT 94 (226)
Q Consensus 70 ~G~IvieL~~-----~~aP~~v~nF~~L~~ 94 (226)
.|+.++-.|. +.||.+.....++-+
T Consensus 66 ~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~ 95 (207)
T COG1999 66 KGKPSLVFFGYTHCPDVCPTTLAELKALLK 95 (207)
T ss_pred CCCEEEEEeecCCCCccChHHHHHHHHHHH
Confidence 5777776654 788888887777763
No 45
>PF10731 Anophelin: Thrombin inhibitor from mosquito; InterPro: IPR018932 Members of this family are all inhibitors of thrombin, the peptidase that is at the end of the blood coagulation cascade and which creates the clot by cleaving fibrinogen. The interaction between thrombin and fibrinogen involves two different areas of contact - via the thrombin active site and via a second substrate-binding site known as an exosite. The inhibitor acts by blocking the exosite, rather than by interacting with the active site. The inhibitors are from mosquitoes that feed on human blood and which, by inhibiting thrombin, prevent the blood from clotting and keep it flowing.
Probab=28.97 E-value=66 Score=21.46 Aligned_cols=16 Identities=25% Similarity=0.397 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHhhh
Q 027222 12 LLWALVLFLTLAFIQN 27 (226)
Q Consensus 12 ~~~~l~~~~~~a~~~~ 27 (226)
+++++++.++.+..++
T Consensus 6 ~vialLC~aLva~vQ~ 21 (65)
T PF10731_consen 6 IVIALLCVALVAIVQS 21 (65)
T ss_pred hHHHHHHHHHHHHHhc
Confidence 3334444444443333
No 46
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=26.82 E-value=45 Score=25.39 Aligned_cols=9 Identities=44% Similarity=1.047 Sum_probs=4.5
Q ss_pred cccCC-EEEE
Q 027222 107 YYKGS-SFHR 115 (226)
Q Consensus 107 ~Y~g~-~f~R 115 (226)
+|+.. .||-
T Consensus 77 ~Yd~~g~~~~ 86 (130)
T PF12273_consen 77 YYDQQGNFHP 86 (130)
T ss_pred CCCCCCCCCC
Confidence 56654 3443
No 47
>PF10694 DUF2500: Protein of unknown function (DUF2500); InterPro: IPR019635 This entry represents a group of proteins that is largely confined to the Gammaproteobacteria. The function is not known. ; PDB: 3RD4_D 2L0C_A 3Q6C_N.
Probab=25.44 E-value=73 Score=23.54 Aligned_cols=46 Identities=24% Similarity=0.427 Sum_probs=28.5
Q ss_pred cEEEEEEEECCEEeeEEEEEEecCCCchhHHHHHHhhcCCCCcccCCCCccccCCEEEEee
Q 027222 57 HKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRII 117 (226)
Q Consensus 57 ~~v~~~i~~~~~~~G~IvieL~~~~aP~~v~nF~~L~~g~~g~~~~~~~~~Y~g~~f~Rv~ 117 (226)
..-|+.++..+ -+++.+.+ .-..+-.|+.|++| .+.|.|+.|....
T Consensus 64 ~~YyvtFe~e~--G~r~ef~V-------~~~~Y~~l~eGd~G------~Lt~QGtrfi~F~ 109 (110)
T PF10694_consen 64 TEYYVTFEFES--GDRREFRV-------SGHEYGQLAEGDKG------TLTYQGTRFIGFE 109 (110)
T ss_dssp EEEEEEEEESS--SSSEEEEE--------HHHHHTS-TT-EE------EEEEETTEEEEEE
T ss_pred eEEEEEEEECC--CCEEEEEE-------CHHHcCCCCCCCEE------EEEEeCCEEEeee
Confidence 35566666652 12556655 35578888888765 4689999997653
No 48
>COG0219 CspR Predicted rRNA methylase (SpoU class) [Translation, ribosomal structure and biogenesis]
Probab=25.39 E-value=1e+02 Score=24.56 Aligned_cols=33 Identities=24% Similarity=0.480 Sum_probs=28.8
Q ss_pred EEEEEecCCCchhHHHHHHhhcCCCCcccCCCCccccCCEEEEeec
Q 027222 73 IVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIP 118 (226)
Q Consensus 73 IvieL~~~~aP~~v~nF~~L~~g~~g~~~~~~~~~Y~g~~f~Rv~~ 118 (226)
+.|-||.-.-|..+.|++++| .-.|+..|.|.|
T Consensus 3 ~~IvL~~PeIP~NTGNI~R~c-------------a~tga~LhlI~P 35 (155)
T COG0219 3 LNIVLYQPEIPPNTGNIIRTC-------------AATGAELHLIEP 35 (155)
T ss_pred cEEEEECCCCCCchhHHHHHH-------------HhcCCeEEEEcc
Confidence 578899999999999999999 466888998876
No 49
>KOG3953 consensus SOCS box protein SSB-1, contains SPRY domain [General function prediction only]
Probab=23.62 E-value=1.4e+02 Score=25.49 Aligned_cols=38 Identities=21% Similarity=0.342 Sum_probs=30.9
Q ss_pred EEEEEEEECCEEee-EEEEEEecCCCchhHHHHHHhhcC
Q 027222 58 KVYFDIEVGGKPIG-RIVMGLFGKAVPKTVENFRALCTG 95 (226)
Q Consensus 58 ~v~~~i~~~~~~~G-~IvieL~~~~aP~~v~nF~~L~~g 95 (226)
+-+.+|...+.+.| ..+|.+++..||.++.-+.+|.-.
T Consensus 70 ~h~w~i~w~~r~~GT~avVGIaTk~Aplha~gy~aLlGs 108 (242)
T KOG3953|consen 70 RHAWEIAWPNRQRGTHAVVGIATKVAPLHAVGYTALLGS 108 (242)
T ss_pred ceEEEEEecCCccCCcceEEEEcccCchhhhHHHHHhCC
Confidence 34677777665666 579999999999999999999944
No 50
>COG5510 Predicted small secreted protein [Function unknown]
Probab=23.08 E-value=1.4e+02 Score=18.63 Aligned_cols=16 Identities=25% Similarity=0.019 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 027222 9 SVALLWALVLFLTLAF 24 (226)
Q Consensus 9 ~~~~~~~l~~~~~~a~ 24 (226)
..++++++.++.+.+|
T Consensus 7 l~i~~vll~s~llaaC 22 (44)
T COG5510 7 LLIALVLLASTLLAAC 22 (44)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3344444445544444
No 51
>PF08139 LPAM_1: Prokaryotic membrane lipoprotein lipid attachment site; InterPro: IPR012640 In prokaryotes, membrane lipoproteins are synthesized with a precursor signal peptide, which is cleaved by a specific lipoprotein signal peptidase (signal peptidase II). The peptidase recognises a conserved sequence and cuts upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached [,]. This lipid attachment site is found in homologues of the VirB proteins of type IV secretion systems (T4SS). Conjugal transfer across the cell envelope of Gram-negative bacteria is mediated by a supramolecular structure termed mating pair formation (Mpf) complex. Collectively, secretion pathways ancestrally related to bacterial conjugation systems are now known as T4SS. T4SS are involved in the delivery of effector molecules to eukaryotic target cells; each of these systems exports distinct DNA or protein substrates to effect a myriad of changes in host cell physiology during infection [].
Probab=21.96 E-value=1.4e+02 Score=16.33 Aligned_cols=18 Identities=22% Similarity=0.314 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 027222 7 LVSVALLWALVLFLTLAF 24 (226)
Q Consensus 7 ~~~~~~~~~l~~~~~~a~ 24 (226)
+...+++.+++++.+.+|
T Consensus 6 mmKkil~~l~a~~~LagC 23 (25)
T PF08139_consen 6 MMKKILFPLLALFMLAGC 23 (25)
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 344444445555544443
No 52
>PRK07021 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=21.09 E-value=4.2e+02 Score=20.85 Aligned_cols=23 Identities=17% Similarity=0.280 Sum_probs=11.3
Q ss_pred EEEEEEecCC--------CchhHHHHHHhhc
Q 027222 72 RIVMGLFGKA--------VPKTVENFRALCT 94 (226)
Q Consensus 72 ~IvieL~~~~--------aP~~v~nF~~L~~ 94 (226)
.|.+++..+. .|.--+.++.+.+
T Consensus 84 ~i~L~~~~~~~~~~l~~~~p~IRd~ii~~Ls 114 (162)
T PRK07021 84 GLTLRLPDEATRERLKDYLPEVRSRLLLLLS 114 (162)
T ss_pred EEEEEECCHHHHHHHHHhCHHHHHHHHHHHh
Confidence 3566665332 3444445555553
No 53
>PF15284 PAGK: Phage-encoded virulence factor
Probab=20.14 E-value=2.1e+02 Score=19.13 Aligned_cols=15 Identities=20% Similarity=0.089 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHH
Q 027222 7 LVSVALLWALVLFLT 21 (226)
Q Consensus 7 ~~~~~~~~~l~~~~~ 21 (226)
.+.++++++|.+.++
T Consensus 6 sifL~l~~~LsA~~F 20 (61)
T PF15284_consen 6 SIFLALVFILSAAGF 20 (61)
T ss_pred HHHHHHHHHHHHhhh
Confidence 333344444443333
Done!