BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027224
(226 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8C2A2|SEN54_MOUSE tRNA-splicing endonuclease subunit Sen54 OS=Mus musculus GN=Tsen54
PE=2 SV=2
Length = 525
Score = 65.9 bits (159), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 57/110 (51%), Gaps = 3/110 (2%)
Query: 46 AHWNNELGMAEVVEKKGKMWTTTGIVRNGKTYCSIEETLFLAEIGALYLLDNNDLCLPLK 105
A W E G E+ GK W T G G+ EE L+L E G++ L DL L ++
Sbjct: 80 AEWKPEEGFVELTSPAGKFWQTMGYSEEGRQRLHPEEALYLLECGSIQLF-YQDLPLSIQ 138
Query: 106 EIYEKIANEKSGCSWELFEVYRHLKSLGYIVGRHGVPWIVKIPKGRDINI 155
E Y+ + E + S+ ++V+ HLK LGY+V R + +V P R +N+
Sbjct: 139 EAYQLLLTEDT-LSFLQYQVFSHLKRLGYVVRRFQLSSVVS-PYERQLNL 186
>sp|Q7Z6J9|SEN54_HUMAN tRNA-splicing endonuclease subunit Sen54 OS=Homo sapiens GN=TSEN54
PE=1 SV=3
Length = 526
Score = 65.1 bits (157), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 59/112 (52%), Gaps = 3/112 (2%)
Query: 46 AHWNNELGMAEVVEKKGKMWTTTGIVRNGKTYCSIEETLFLAEIGALYLLDNNDLCLPLK 105
A W E G E+ GK W T G G+ EE L+L E G+++L + DL L ++
Sbjct: 80 AEWRPEEGFVELKSPAGKFWQTMGFSEQGRQRLHPEEALYLLECGSIHLF-HQDLPLSIQ 138
Query: 106 EIYEKIANEKSGCSWELFEVYRHLKSLGYIVGRHGVPWIVKIPKGRDINITS 157
E Y+ + + + ++ ++V+ HLK LGY+V R P V P R +N+ +
Sbjct: 139 EAYQLLLTDHT-VTFLQYQVFSHLKRLGYVV-RRFQPSSVLSPYERQLNLDA 188
>sp|Q74ZJ5|SEN54_ASHGO tRNA-splicing endonuclease subunit SEN54 OS=Ashbya gossypii (strain
ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056)
GN=SEN54 PE=3 SV=1
Length = 455
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 54/107 (50%), Gaps = 14/107 (13%)
Query: 41 KDISKAHWNNELGMAEVVEKKGKMWTTTGIV-RNGKTYCSIEETLFLAEIGAL--YLL-- 95
K + KA+W E MA + +G T G V ++G+ + + E ++L E G + YL
Sbjct: 83 KTLIKAYWEEEQRMARIPNARGSFTNTMGKVDKHGQCWLQLHEFVYLVERGTVSPYLALT 142
Query: 96 ------DNNDLCLPLKEIYEKIANEKSGCSWELFEVYRHLKSLGYIV 136
++ D+ L ++++Y + S + F VY HLK LG+IV
Sbjct: 143 VGDEKSNHEDVLLSVQDVYALFS---STEELDEFLVYAHLKRLGFIV 186
>sp|O74908|SEN54_SCHPO Probable tRNA-splicing endonuclease subunit sen54
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=sen54 PE=3 SV=1
Length = 384
Score = 41.6 bits (96), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 47/97 (48%), Gaps = 3/97 (3%)
Query: 46 AHWNNELGMAEVVEKKGKMWTTTGIV-RNGKTYCSIEETLFLAEIGALYLLDNNDLCLPL 104
A WN + GM+ V + G ++ T G + + EETL+L E G++ L + L
Sbjct: 86 ATWNAQNGMSCVEKAHGPLFKTMGTADSQNRMWLLPEETLYLVERGSMECWSEEGLPMSL 145
Query: 105 KEIYEKIANEKSGCSWELFEVYRHLKSLGYIVGRHGV 141
+ +Y A+ S E + VY HL+ G+ V R +
Sbjct: 146 QAVYS--ASIPLCGSLENYLVYAHLRRCGFSVIRSNL 180
>sp|P40383|XRN1_SCHPO 5'-3' exoribonuclease 1 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=exo2 PE=1 SV=1
Length = 1328
Score = 38.5 bits (88), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 39/91 (42%), Gaps = 7/91 (7%)
Query: 117 GCSWELFEVYRHLKSLGYIVGRHGVPWIVKIPKGRDINITSDPVSLQVTPKR--HGVMDV 174
G W LF YR +S G+ H P I + KG D+ I TP R +M V
Sbjct: 525 GLQWVLFYYYRGCQSWGWYYNYHFAPKISDVLKGLDVKIDFK----MGTPFRPFEQLMAV 580
Query: 175 EPKEESSLV-ALFYNIQINEVRPVFDVYLPN 204
P +LV F ++ +N P+ D Y N
Sbjct: 581 LPARSQALVPPCFRDLMVNSESPIIDFYPEN 611
>sp|P22147|XRN1_YEAST 5'-3' exoribonuclease 1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=XRN1 PE=1 SV=1
Length = 1528
Score = 33.9 bits (76), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 39/86 (45%), Gaps = 3/86 (3%)
Query: 117 GCSWELFEVYRHLKSLGYIVGRHGVPWIVKIPKGRDINITSDPVSLQVTPKRHGVMDVEP 176
G W L+ YR S + H P I + KG D +I D +S TP + +M V P
Sbjct: 540 GLQWVLYYYYRGCPSWSWYYPHHYAPRISDLAKGLDQDIEFD-LSKPFTPFQQ-LMAVLP 597
Query: 177 KEESSLV-ALFYNIQINEVRPVFDVY 201
+ +L+ F + +E P+ D Y
Sbjct: 598 ERSKNLIPPAFRPLMYDEQSPIHDFY 623
>sp|B6YXU4|ENDA_THEON tRNA-splicing endonuclease OS=Thermococcus onnurineus (strain NA1)
GN=endA PE=3 SV=1
Length = 171
Score = 32.0 bits (71), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 69 GIVRNGKTYCSIEETLFLAEIGALYLLDNNDLCLPLKEIYEKIANEKSGCSWELFEVYRH 128
G V NGK + S+ E +L E G + +LD L +E++E + +K + VY+
Sbjct: 32 GEVVNGKLFLSLIEAAYLMERGKIKVLDGGK-ELSFEELFE-LGRKKDDQFDIKYLVYKD 89
Query: 129 LKSLGYIV 136
L+ GYIV
Sbjct: 90 LRDRGYIV 97
>sp|Q0VRN6|GLPK_ALCBS Glycerol kinase OS=Alcanivorax borkumensis (strain SK2 / ATCC
700651 / DSM 11573) GN=glpK PE=3 SV=1
Length = 497
Score = 32.0 bits (71), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 40/107 (37%), Gaps = 10/107 (9%)
Query: 52 LGMAEVVEKKGKMWTTTGIVRNGKTYCSIEETLFLAEIGALYLLDNNDLCLPLKEIYEKI 111
+ E VE ++ TT G NGKT ++E ++F+A +L D L +E
Sbjct: 270 MNTGEAVESHNRLLTTVGYRLNGKTTYALEGSIFVAGAAIQWLRDGLHLIRDARETEALA 329
Query: 112 ANEKSGCSWELFEVYRHLKSLGYIVGRHGVPWIVKIPKGRDINITSD 158
S L + L G PW +G + +T D
Sbjct: 330 RRVGSAGGVYLVPAFTGL----------GAPWWDPHARGALMGLTRD 366
>sp|A5I3F5|PIP_CLOBH Proline iminopeptidase OS=Clostridium botulinum (strain Hall / ATCC
3502 / NCTC 13319 / Type A) GN=pip PE=3 SV=1
Length = 293
Score = 31.6 bits (70), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 21/33 (63%), Gaps = 6/33 (18%)
Query: 99 DLCLPL--KEIYEKIANEKSGCSWELFEVYRHL 129
DLC PL K +Y+KI N + WELFE RH+
Sbjct: 244 DLCSPLVAKTMYDKIPNSE----WELFEFSRHM 272
>sp|A1RSY7|ENDA_PYRIL tRNA-splicing endonuclease OS=Pyrobaculum islandicum (strain DSM
4184 / JCM 9189) GN=endA PE=3 SV=1
Length = 183
Score = 31.6 bits (70), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 35/60 (58%), Gaps = 3/60 (5%)
Query: 78 CSIEETLFLAEIGALYLLDNNDL-CLPLKEIYEKIANEKSGCSWELFEVYRHLKSLGYIV 136
++ E L+LAE G L ++ N LP K I ++ EK +++++Y++ + LGY+V
Sbjct: 50 LALYEALYLAERGKLKVVSKNGTEVLPEKLI--ELGREKIKNFDDIYKIYKYFRDLGYVV 107
>sp|Q9C9U3|DOX2_ARATH Alpha-dioxygenase 2 OS=Arabidopsis thaliana GN=DOX2 PE=2 SV=1
Length = 631
Score = 31.6 bits (70), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 62/143 (43%), Gaps = 30/143 (20%)
Query: 22 EIDEEDYYMSGFISKLQFRKDISKAHWNNELGMAEV-VEKKGKMWTT------------- 67
++ +D++ SG ++ D S + N+E GM V V K GK+ +
Sbjct: 193 KVPTDDHHKSGAVNTRTPWWDGSVIYGNDETGMRRVRVFKDGKLKISGDGLLERDERGVP 252
Query: 68 -TGIVRNGKTYCSIEETLFLAEIGALYLLDNNDLCLPLKEIYEKIANEKSGCSWELFEVY 126
+G +RN + S+ + LF+ E +N +C LKE Y +EK L+
Sbjct: 253 ISGDIRNSWSGFSLLQALFVKE--------HNSVCDMLKERYPDFDDEK------LYRTA 298
Query: 127 RHLKSLGYIVGRHGVPWIVKIPK 149
R L + I H + W +++ K
Sbjct: 299 R-LVTAAVIAKVHTIDWTIELLK 320
>sp|B8GL96|GATB_THISH Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B
OS=Thioalkalivibrio sp. (strain HL-EbGR7) GN=gatB PE=3
SV=1
Length = 477
Score = 30.4 bits (67), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 26/47 (55%), Gaps = 6/47 (12%)
Query: 26 EDYYMSGFISKLQFRKDISKAHWNNELGMAEVVEKKG-KMWTTTGIV 71
ED +SG I+K D+ +A WN E V+EKKG K T TG +
Sbjct: 381 EDNTISGKIAK-----DVFEAMWNGEGSADAVIEKKGLKQITDTGAI 422
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.137 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 92,107,944
Number of Sequences: 539616
Number of extensions: 3949487
Number of successful extensions: 9974
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 9964
Number of HSP's gapped (non-prelim): 26
length of query: 226
length of database: 191,569,459
effective HSP length: 113
effective length of query: 113
effective length of database: 130,592,851
effective search space: 14756992163
effective search space used: 14756992163
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.3 bits)