Query 027224
Match_columns 226
No_of_seqs 189 out of 301
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 10:50:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027224.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027224hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ohc_A TRNA-splicing endonucle 99.4 2.6E-14 8.8E-19 128.6 3.5 80 52-142 8-91 (289)
2 2cv8_A TRNA-splicing endonucle 99.4 1.7E-14 5.9E-19 121.2 0.1 90 46-139 11-107 (180)
3 3iey_A TRNA-splicing endonucle 99.4 6.6E-14 2.3E-18 115.5 2.0 66 72-139 11-76 (154)
4 2zyz_B TRNA-splicing endonucle 99.4 2.9E-13 9.8E-18 114.0 4.5 92 45-139 10-110 (183)
5 1a79_A TRNA endonuclease; 2.28 99.4 4.8E-13 1.6E-17 111.5 5.4 72 67-139 26-97 (171)
6 3ajv_B TRNA-splicing endonucle 99.2 3.4E-12 1.1E-16 107.9 4.1 99 36-139 11-115 (186)
7 3iey_B NEQ261; protein heterod 99.2 8.4E-13 2.9E-17 108.8 -1.4 73 67-143 12-84 (153)
8 3ajv_A Putative uncharacterize 99.0 5.9E-11 2E-15 101.0 3.0 66 67-140 58-123 (190)
9 1r0v_A ENDA, tRNA-intron endon 98.9 9.8E-10 3.3E-14 99.4 4.4 66 68-139 171-236 (305)
10 4fz2_A TRNA intron endonucleas 98.8 2E-09 6.8E-14 100.3 4.4 71 68-140 30-100 (395)
11 1r0v_A ENDA, tRNA-intron endon 98.6 2.1E-09 7E-14 97.3 -1.4 65 67-139 19-83 (305)
12 4fz2_A TRNA intron endonucleas 98.6 1.4E-08 4.9E-13 94.6 4.0 61 73-139 166-226 (395)
13 2ohc_A TRNA-splicing endonucle 97.8 9.5E-06 3.3E-10 72.9 3.3 65 35-140 156-220 (289)
14 2zyz_A Putative uncharacterize 92.8 0.02 7E-07 44.8 0.1 21 118-138 21-41 (116)
15 2p5k_A Arginine repressor; DNA 40.0 11 0.00039 24.3 1.4 37 100-139 18-54 (64)
16 1w4t_A Arylamine N-acetyltrans 27.2 18 0.00062 31.8 0.9 43 98-140 71-115 (299)
17 2ija_A Arylamine N-acetyltrans 26.0 19 0.00065 31.4 0.8 43 98-140 51-95 (295)
18 1w5r_A Arylamine N-acetyltrans 23.2 20 0.0007 31.0 0.5 43 98-140 50-95 (278)
19 2xtc_A F-box-like/WD repeat-co 23.2 12 0.00041 27.8 -0.9 17 121-137 8-24 (90)
20 2bsz_A Arylamine N-acetyltrans 23.1 21 0.00071 31.0 0.5 43 98-140 51-95 (278)
21 3d9w_A Putative acetyltransfer 22.4 22 0.00077 31.1 0.6 43 98-140 60-104 (293)
22 2vfb_A Arylamine N-acetyltrans 21.8 23 0.00078 30.7 0.5 43 98-140 47-92 (280)
23 3bl4_A Uncharacterized protein 20.3 22 0.00076 27.4 0.1 51 83-133 13-63 (124)
No 1
>2ohc_A TRNA-splicing endonuclease; intron, hydrolase; 2.50A {Thermoplasma acidophilum} PDB: 2ohe_A
Probab=99.44 E-value=2.6e-14 Score=128.61 Aligned_cols=80 Identities=16% Similarity=0.267 Sum_probs=73.0
Q ss_pred CCeEEEEcccCccee----eeeEEeCCeEEEehHHHHHHHhcCcEEEEcCCCcccCHHHHHHHHHhccCCCCccceeeeh
Q 027224 52 LGMAEVVEKKGKMWT----TTGIVRNGKTYCSIEETLFLAEIGALYLLDNNDLCLPLKEIYEKIANEKSGCSWELFEVYR 127 (226)
Q Consensus 52 ~~~a~v~~~rG~~~~----~~G~~~~~~l~L~peEALYL~ErG~L~l~~~~g~~LSlqe~y~l~~~~~~~~~~~kY~VY~ 127 (226)
..++.|++++|+++. +||+.+++.|+|+|+||+||++||.|++. .+||++++++.+ ++.+|.||+
T Consensus 8 ~~~~~v~~~~~~~~~~~~y~~G~~~~~~l~L~p~Ea~YLl~rg~l~i~----~~~~~~~~~~~~-------~~~~y~VY~ 76 (289)
T 2ohc_A 8 SHVFFIEDGKSKNYIIGKYKIGYLSGDNLILDPYECLYLYFKGRISFQ----NSDSFRDLFDTV-------TFDRYVAYE 76 (289)
T ss_dssp TEEEEESTTCCHHHHHHHHCCCEEETTEEECCHHHHHHHHHTTCEEES----STTHHHHHHHHS-------CHHHHHHHH
T ss_pred CeEEEecCCCCCceEecceeeceEcCCEEEEcHHHHHHHHhcCCEEEe----cCCCHHHHHHhh-------hhhhEeehh
Confidence 456789999999999 99999999999999999999999999996 369999999765 699999999
Q ss_pred hhhcCCeEEeecCCC
Q 027224 128 HLKSLGYIVGRHGVP 142 (226)
Q Consensus 128 ~Lkr~GYiV~R~~~~ 142 (226)
+||++||.|++.+..
T Consensus 77 DLr~rG~~v~~~g~d 91 (289)
T 2ohc_A 77 ILKNKGYRVKEDSGL 91 (289)
T ss_dssp HHHTTTCEEEEETTE
T ss_pred hHHhCCceEeeCCcc
Confidence 999999999998753
No 2
>2cv8_A TRNA-splicing endonuclease; tRNA-intron endonuclease, structural genomics, NPPSFA; 2.80A {Sulfolobus tokodaii}
Probab=99.41 E-value=1.7e-14 Score=121.19 Aligned_cols=90 Identities=24% Similarity=0.266 Sum_probs=72.9
Q ss_pred EEEeCCCCeEEEEcccCcceeeeeEE-------eCCeEEEehHHHHHHHhcCcEEEEcCCCcccCHHHHHHHHHhccCCC
Q 027224 46 AHWNNELGMAEVVEKKGKMWTTTGIV-------RNGKTYCSIEETLFLAEIGALYLLDNNDLCLPLKEIYEKIANEKSGC 118 (226)
Q Consensus 46 a~W~pe~~~a~v~~~rG~~~~~~G~~-------~~~~l~L~peEALYL~ErG~L~l~~~~g~~LSlqe~y~l~~~~~~~~ 118 (226)
.+|+++..+... .+|.|++.+|.. .+.+|+|+||||+||+|+|.|.|. ++|.+||++++++.+.... +.
T Consensus 11 ~v~d~~~~~~L~--~~~~yG~~~g~~~p~~~~~~~~~L~Ls~eEA~yL~~~g~l~v~-d~~~~ls~~el~~~~~~~~-~~ 86 (180)
T 2cv8_A 11 LIKNIEDARLIY--KMGYYGKPIGISKPKSAEEINSELILSLIEGVYLVKKGKLEIV-SNGERLDFERLYQIGVTQI-PR 86 (180)
T ss_dssp EECCHHHHHHHH--HHHSCSEECC-----------CCEEEEHHHHHHHHHTTSCEEE-ETTEEECHHHHHHHHHHHS-TT
T ss_pred EEEchHHHHHHH--HCCccceEcCCCCccccccCCceEEEeHHHHHHHHHCCCEEEe-eCCCCCCHHHHHHHHhhhc-cc
Confidence 367766654422 468888888753 246899999999999999999999 5678999999999998644 46
Q ss_pred CccceeeehhhhcCCeEEeec
Q 027224 119 SWELFEVYRHLKSLGYIVGRH 139 (226)
Q Consensus 119 ~~~kY~VY~~Lkr~GYiV~R~ 139 (226)
++.+|.||+|||++||+|+..
T Consensus 87 f~~~y~VY~~Lr~~G~~v~~G 107 (180)
T 2cv8_A 87 FRILYSVYEDLREKGYVVRSG 107 (180)
T ss_dssp HHHHHHHHHHHHHTTCEEEEC
T ss_pred HHHHhHHHHHHHhCCeEeccc
Confidence 999999999999999999987
No 3
>3iey_A TRNA-splicing endonuclease; protein heterodimer, endonuclease, hydrolase, nuclease, tRNA processing, hydrolase-RNA binding protein complex; 2.11A {Nanoarchaeum equitans}
Probab=99.39 E-value=6.6e-14 Score=115.51 Aligned_cols=66 Identities=20% Similarity=0.297 Sum_probs=53.9
Q ss_pred eCCeEEEehHHHHHHHhcCcEEEEcCCCcccCHHHHHHHHHhccCCCCccceeeehhhhcCCeEEeec
Q 027224 72 RNGKTYCSIEETLFLAEIGALYLLDNNDLCLPLKEIYEKIANEKSGCSWELFEVYRHLKSLGYIVGRH 139 (226)
Q Consensus 72 ~~~~l~L~peEALYL~ErG~L~l~~~~g~~LSlqe~y~l~~~~~~~~~~~kY~VY~~Lkr~GYiV~R~ 139 (226)
.-..|+|+||||+||+|+|+|+|. .+|.+||++++++++.+. +..++.+|.||+|||++||+|+..
T Consensus 11 ~~e~L~Ls~~EA~YL~~~G~L~v~-~~~~~ls~~el~~~~~~~-~~~f~~~y~vY~dLr~rG~~vk~G 76 (154)
T 3iey_A 11 LVDDKELPLIEAYYLLDKGELEVY-EDDKKLSKEEFLKKCLTY-DERFLIRYKAYKELRDKGYTLGTA 76 (154)
T ss_dssp ECC--CEEHHHHHHHHHHTSCCCC-SCCC----HHHHHHHHHH-CTTHHHHHHHHHHHHHTTCEEEEE
T ss_pred ccceEEEcHHHHHHHHHCCCEEEE-ECCCcCCHHHHHHHHHhc-CccHHHHHHHHHHHHHCCcEECCC
Confidence 347899999999999999999998 468899999999999864 356999999999999999999977
No 4
>2zyz_B TRNA-splicing endonuclease; crenarchaea, heterotetramer, RNA PROC endonuclease, hydrolase, tRNA processing; 1.70A {Pyrobaculum aerophilum}
Probab=99.36 E-value=2.9e-13 Score=114.02 Aligned_cols=92 Identities=21% Similarity=0.247 Sum_probs=74.6
Q ss_pred EEEEeCCCCeEEEEcccCcceeeeeEEe---------CCeEEEehHHHHHHHhcCcEEEEcCCCcccCHHHHHHHHHhcc
Q 027224 45 KAHWNNELGMAEVVEKKGKMWTTTGIVR---------NGKTYCSIEETLFLAEIGALYLLDNNDLCLPLKEIYEKIANEK 115 (226)
Q Consensus 45 ~a~W~pe~~~a~v~~~rG~~~~~~G~~~---------~~~l~L~peEALYL~ErG~L~l~~~~g~~LSlqe~y~l~~~~~ 115 (226)
..+|+++..+... .+|.|++-.|... +.+|+|+||||+||+|+|.|.|.+.+|.+||++++++.+...
T Consensus 10 v~v~d~~~~~~L~--~~~~~G~~~g~~~p~~~~~~~~~~~L~Ls~eEa~yL~~~g~l~v~d~~~~~ls~~el~~~~~~~- 86 (183)
T 2zyz_B 10 VIVEDVEFARRLY--KEGFYGRFLGYDKVKRDEVEKINAPLILGLYEALYLAEKGRLKVMGEDGREVAPEELAALGRER- 86 (183)
T ss_dssp EEECCHHHHHHHH--HTTCCSEETTCCSCCGGGGGGCCSCEEEEHHHHHHHHHTTSCEEECTTSCEECHHHHHHHHHHH-
T ss_pred EEEEccHHHHHHH--HCCccceECCCCCCCCcccccCcceEEeeHHHHHHHHHCCCEEEECCCCCcCCHHHHHHHHhhh-
Confidence 3456655433222 4677777777331 378999999999999999999998888999999999998764
Q ss_pred CCCCccceeeehhhhcCCeEEeec
Q 027224 116 SGCSWELFEVYRHLKSLGYIVGRH 139 (226)
Q Consensus 116 ~~~~~~kY~VY~~Lkr~GYiV~R~ 139 (226)
.+.++.+|.||+|||++||+|+..
T Consensus 87 ~~~f~~~y~vy~~lr~~G~~v~~G 110 (183)
T 2zyz_B 87 MRNFDEIYKIYKYFRDLGYVVKSG 110 (183)
T ss_dssp STTHHHHHHHHHHHHHTTCEEEEC
T ss_pred cccHHHHHHHHHHHHHCCeEeccc
Confidence 446999999999999999999987
No 5
>1a79_A TRNA endonuclease; 2.28A {Methanocaldococcus jannaschii} SCOP: c.52.2.1 d.75.1.1
Probab=99.36 E-value=4.8e-13 Score=111.53 Aligned_cols=72 Identities=28% Similarity=0.364 Sum_probs=62.0
Q ss_pred eeeEEeCCeEEEehHHHHHHHhcCcEEEEcCCCcccCHHHHHHHHHhccCCCCccceeeehhhhcCCeEEeec
Q 027224 67 TTGIVRNGKTYCSIEETLFLAEIGALYLLDNNDLCLPLKEIYEKIANEKSGCSWELFEVYRHLKSLGYIVGRH 139 (226)
Q Consensus 67 ~~G~~~~~~l~L~peEALYL~ErG~L~l~~~~g~~LSlqe~y~l~~~~~~~~~~~kY~VY~~Lkr~GYiV~R~ 139 (226)
.+|+..+..|.|+||||+||+++|.|+|.+.+..+||++++++.+.... +.++.+|.||+|||++||+|+..
T Consensus 26 ~yG~~~~~~L~Ls~~Ea~yL~~~g~l~v~~~~~~~l~~~el~~~~~~~~-~~f~~~y~VY~dLr~rG~~v~~G 97 (171)
T 1a79_A 26 HYGNVEGNFLSLSLVEALYLINLGWLEVKYKDNKPLSFEELYEYARNVE-ERLCLKYLVYKDLRTRGYIVKTG 97 (171)
T ss_dssp TCSEECSSCEEEEHHHHHHHHHHTCEEEECSSSSCCCHHHHHHHHHHHC-TTHHHHHHHHHHHHHTTCEEEEC
T ss_pred cCceEcCCeEEEeHHHHHHHHHcCCEEEEeCCCCCCCHHHHHHHHHhcc-ccHHHHhHHHHHHHHCCeEeccc
Confidence 4455556999999999999999999999965445599999999988644 35899999999999999999987
No 6
>3ajv_B TRNA-splicing endonuclease; ENDA, archaea crenarch hydrolase; 1.70A {Aeropyrum pernix} PDB: 3p1z_B
Probab=99.24 E-value=3.4e-12 Score=107.94 Aligned_cols=99 Identities=18% Similarity=0.210 Sum_probs=75.4
Q ss_pred ceeecCCeEEEEEeCCCCeEEEEcccCcceeeeeEEe------CCeEEEehHHHHHHHhcCcEEEEcCCCcccCHHHHHH
Q 027224 36 KLQFRKDISKAHWNNELGMAEVVEKKGKMWTTTGIVR------NGKTYCSIEETLFLAEIGALYLLDNNDLCLPLKEIYE 109 (226)
Q Consensus 36 R~~~~k~~s~a~W~pe~~~a~v~~~rG~~~~~~G~~~------~~~l~L~peEALYL~ErG~L~l~~~~g~~LSlqe~y~ 109 (226)
++....+. ..+|+++..+... .+|.|++-.|... +..|.|+||||+||+++|.|.|.+.+|.+||++++++
T Consensus 11 ~~~l~~~~-v~v~d~~~~~~L~--~~~~yG~~~g~~~p~~~~~~~~L~Ls~~Ea~yL~~~g~l~v~~~~~~~ls~~el~~ 87 (186)
T 3ajv_B 11 SGVLIGDS-VLVTDVEQARSLY--SCGYYGQPLDVEKPRGADFEGPLRLSLIESLYLAEKGVLEVAKPDGSSVGVEDLRT 87 (186)
T ss_dssp EEEEETTE-EEECCHHHHHHHH--HTTCCSEESSCSSCSTTCCCCCEEEEHHHHHHHHHTTSEEEECTTSCEECHHHHHH
T ss_pred eEEEECCE-EEEEccHHHHHHH--HCCccceECCCCCCCccCCCceEEEeHHHHHHHHHCCCEEEECCCCCcCCHHHHHH
Confidence 34444333 3466665543322 5677777777331 4789999999999999999999977789999999999
Q ss_pred HHHhccCCCCccceeeehhhhcCCeEEeec
Q 027224 110 KIANEKSGCSWELFEVYRHLKSLGYIVGRH 139 (226)
Q Consensus 110 l~~~~~~~~~~~kY~VY~~Lkr~GYiV~R~ 139 (226)
. .. ....++.+|.||+|||++||+|+..
T Consensus 88 ~-~~-~~~~f~~~y~VY~dLr~rG~~v~~G 115 (186)
T 3ajv_B 88 A-VR-GNPRFSMLYNIYRDLRERGFVVRSG 115 (186)
T ss_dssp H-HH-TSHHHHHHHHHHHHHHHTTCEEEEC
T ss_pred H-hh-ccchHHHHhhHHHHHHhCceEeccc
Confidence 8 32 3345899999999999999999977
No 7
>3iey_B NEQ261; protein heterodimer, endonuclease, hydrolase, nuclease, tRNA processing, hydrolase-RNA binding protein complex; 2.11A {Nanoarchaeum equitans} PDB: 3if0_X
Probab=99.20 E-value=8.4e-13 Score=108.80 Aligned_cols=73 Identities=22% Similarity=0.177 Sum_probs=64.1
Q ss_pred eeeEEeCCeEEEehHHHHHHHhcCcEEEEcCCCcccCHHHHHHHHHhccCCCCccceeeehhhhcCCeEEeecCCCc
Q 027224 67 TTGIVRNGKTYCSIEETLFLAEIGALYLLDNNDLCLPLKEIYEKIANEKSGCSWELFEVYRHLKSLGYIVGRHGVPW 143 (226)
Q Consensus 67 ~~G~~~~~~l~L~peEALYL~ErG~L~l~~~~g~~LSlqe~y~l~~~~~~~~~~~kY~VY~~Lkr~GYiV~R~~~~w 143 (226)
.+|+..++.|.|+|+||+||+ +|+|+|. +|.+||++++.+.+.... .-++.+|.||+|||++||+|+..+..+
T Consensus 12 ~~G~~~~~~L~Ls~~EA~yL~-~g~l~v~--~~~~l~~~~l~~~~~~~~-~~F~~~y~VY~dLR~rG~~vk~GG~DF 84 (153)
T 3iey_B 12 YLGYNMGNYIKISEPELLFVL-RNKPQIK--DRLKLDEKTIIKEGVKKY-KNFWEIYYTVKDLILRGYRVRFDGFFI 84 (153)
T ss_dssp TCSEECSSSEECCHHHHHHHH-HHCTHHH--HHHTCCHHHHHHHHHHHC-TTHHHHHHHHHHHHHTTCEEEECSSSE
T ss_pred eeeeEcCCEEEECHHHHHHHh-cCCEEec--cCCcCCHHHHHHHHHhcC-cchhhhhHHHHHHHHCCCEEeeCCCeE
Confidence 479999999999999999999 9999983 577899999999988644 458999999999999999999986543
No 8
>3ajv_A Putative uncharacterized protein; ENDA, archaea crenarch hydrolase; 1.70A {Aeropyrum pernix} PDB: 3p1z_A
Probab=99.04 E-value=5.9e-11 Score=101.02 Aligned_cols=66 Identities=24% Similarity=0.184 Sum_probs=57.1
Q ss_pred eeeEEeCCeEEEehHHHHHHHhcCcEEEEcCCCcccCHHHHHHHHHhccCCCCccceeeehhhhcCCeEEeecC
Q 027224 67 TTGIVRNGKTYCSIEETLFLAEIGALYLLDNNDLCLPLKEIYEKIANEKSGCSWELFEVYRHLKSLGYIVGRHG 140 (226)
Q Consensus 67 ~~G~~~~~~l~L~peEALYL~ErG~L~l~~~~g~~LSlqe~y~l~~~~~~~~~~~kY~VY~~Lkr~GYiV~R~~ 140 (226)
.+|...++. |+|+||+||+++|.|++ +..++++++++.+.. .+.+..+|.||+|||++||+|+...
T Consensus 58 ~yG~~~~~~--Ls~vEAlYL~~~G~L~v----~~~~~~~eL~~~~~~--~~~f~~kY~VYkDLR~RGy~Vk~G~ 123 (190)
T 3ajv_A 58 RIGYLRKGR--LEPLEAAYQASRGMLCM----GETRGWAAAVEVIAG--LGLSLDTALVYFDLRRKGRKPLVGV 123 (190)
T ss_dssp HHTSEETTE--ECHHHHHHHHHHTCEEE----TTBCHHHHHHHHHHH--TTCCHHHHHHHHHHHHTTCCCEECS
T ss_pred ccccccCCe--ECHHHHHHHHhcCcEee----cCCCCHHHHHHHHhh--CCCcceEEEeHHHHHhCCCEEeecC
Confidence 367777777 99999999999999987 346899999998875 3368999999999999999999875
No 9
>1r0v_A ENDA, tRNA-intron endonuclease, intron endonuclease; RNA splicing, X-RAY crystallography, translati hydrolase; 2.00A {Archaeoglobus fulgidus} SCOP: c.52.2.1 c.52.2.1 d.75.1.1 PDB: 1r11_A 1rlv_A 2gjw_A* 3p1y_A
Probab=98.88 E-value=9.8e-10 Score=99.43 Aligned_cols=66 Identities=30% Similarity=0.457 Sum_probs=56.2
Q ss_pred eeEEeCCeEEEehHHHHHHHhcCcEEEEcCCCcccCHHHHHHHHHhccCCCCccceeeehhhhcCCeEEeec
Q 027224 68 TGIVRNGKTYCSIEETLFLAEIGALYLLDNNDLCLPLKEIYEKIANEKSGCSWELFEVYRHLKSLGYIVGRH 139 (226)
Q Consensus 68 ~G~~~~~~l~L~peEALYL~ErG~L~l~~~~g~~LSlqe~y~l~~~~~~~~~~~kY~VY~~Lkr~GYiV~R~ 139 (226)
+|+..+..|.|+|+||+||+++|.|+|. ..| .+++.+.+...++ .++.+|.||+|||++||+|+..
T Consensus 171 yG~~~~~~L~Lsl~EA~yL~~~g~L~v~-~~~----~~el~~~~~~~~~-~f~~~y~VY~dLR~rG~vvk~G 236 (305)
T 1r0v_A 171 YGSEKGDLVTLSLIESLYLLDLGKLNLL-NAD----REELVKRAREVER-NFDRRYEVYRNLKERGFVVKTG 236 (305)
T ss_dssp CSEEETTEEEECHHHHHHHHHHTCEEET-TCC----HHHHHHHHHHHST-THHHHHHHHHHHHHTTCEEEEC
T ss_pred CCcccCCeeEEcHHHHHHHHhcCcEEEe-cCC----HHHHHHHHhhcCc-chhhhhhHHHHHHHCCCEeccC
Confidence 4555559999999999999999999997 333 3899998876444 5999999999999999999987
No 10
>4fz2_A TRNA intron endonuclease; tRNA splicing endonuclease, hydrolase; 2.25A {Candidatus micrarchaeum acidiphilum}
Probab=98.81 E-value=2e-09 Score=100.32 Aligned_cols=71 Identities=20% Similarity=0.302 Sum_probs=62.9
Q ss_pred eeEEeCCeEEEehHHHHHHHhcCcEEEEcCCCcccCHHHHHHHHHhccCCCCccceeeehhhhcCCeEEeecC
Q 027224 68 TGIVRNGKTYCSIEETLFLAEIGALYLLDNNDLCLPLKEIYEKIANEKSGCSWELFEVYRHLKSLGYIVGRHG 140 (226)
Q Consensus 68 ~G~~~~~~l~L~peEALYL~ErG~L~l~~~~g~~LSlqe~y~l~~~~~~~~~~~kY~VY~~Lkr~GYiV~R~~ 140 (226)
+|+.+++++.|++.||+||+++|.+.+.+.+|..++++++.+.+... .-+..+|.||++||.+||+|++.+
T Consensus 30 FGrp~g~~L~LS~~EAaYLl~~~krl~vd~~gk~ls~eelle~~~~~--r~f~~kylVYkDLReRG~~Vk~~g 100 (395)
T 4fz2_A 30 FGEYRAGKLMLEVEEGLYLVDVRKAACTDENSKPVSFNDIAGVFIKR--KKLMARYFTFKDWRDRGLIIKSPG 100 (395)
T ss_dssp CSEEETTEEEECHHHHHHHHHHSCCEEECTTSCBCCHHHHHHHTTTS--TTHHHHHHHHHHHHHTTCCEESCC
T ss_pred CCCccCCceEEEehhhhHHHHhCCeeeeccCCCcCCHHHHHHHHHhc--hhHHHHHHHHHHHHhcCccccccc
Confidence 67888899999999999999999988887889999999999877643 358999999999999999999754
No 11
>1r0v_A ENDA, tRNA-intron endonuclease, intron endonuclease; RNA splicing, X-RAY crystallography, translati hydrolase; 2.00A {Archaeoglobus fulgidus} SCOP: c.52.2.1 c.52.2.1 d.75.1.1 PDB: 1r11_A 1rlv_A 2gjw_A* 3p1y_A
Probab=98.64 E-value=2.1e-09 Score=97.32 Aligned_cols=65 Identities=20% Similarity=0.247 Sum_probs=20.7
Q ss_pred eeeEEeCCeEEEehHHHHHHHhcCcEEEEcCCCcccCHHHHHHHHHhccCCCCccceeeehhhhcCCeEEeec
Q 027224 67 TTGIVRNGKTYCSIEETLFLAEIGALYLLDNNDLCLPLKEIYEKIANEKSGCSWELFEVYRHLKSLGYIVGRH 139 (226)
Q Consensus 67 ~~G~~~~~~l~L~peEALYL~ErG~L~l~~~~g~~LSlqe~y~l~~~~~~~~~~~kY~VY~~Lkr~GYiV~R~ 139 (226)
-+|+..++.+.|+|+||+||+.+|. ++. ++ | ++++..+.... ..++.+|.||+|||++||+|+..
T Consensus 19 ~yG~~~~~~l~L~~~Ea~YL~~~~~-~i~--~~--~--~~l~~~~~~~~-~~~~~~y~VY~DLR~RGy~v~~g 83 (305)
T 1r0v_A 19 GFGVKRGDKIYLHPLEVVYLQIKGI-ESF--GE--L--EDVLSWAESRM-EDFSTYYFVYEDLRDRGNKVKIQ 83 (305)
T ss_dssp ---------------------------------------------------CHHHHHHHHHHHHHTTCCCEEE
T ss_pred cCCcccCCEEEEeHHHHHHHHHcCC-chH--hh--H--HHHHHHHHhcc-cchhhheehHHHHHhCCcEeeeC
Confidence 4688888999999999999999999 886 33 4 89998886533 35899999999999999999877
No 12
>4fz2_A TRNA intron endonuclease; tRNA splicing endonuclease, hydrolase; 2.25A {Candidatus micrarchaeum acidiphilum}
Probab=98.63 E-value=1.4e-08 Score=94.57 Aligned_cols=61 Identities=23% Similarity=0.412 Sum_probs=54.2
Q ss_pred CCeEEEehHHHHHHHhcCcEEEEcCCCcccCHHHHHHHHHhccCCCCccceeeehhhhcCCeEEeec
Q 027224 73 NGKTYCSIEETLFLAEIGALYLLDNNDLCLPLKEIYEKIANEKSGCSWELFEVYRHLKSLGYIVGRH 139 (226)
Q Consensus 73 ~~~l~L~peEALYL~ErG~L~l~~~~g~~LSlqe~y~l~~~~~~~~~~~kY~VY~~Lkr~GYiV~R~ 139 (226)
...+.|+++||+||+++|.|+|. .+|.+++.+.+.... ..+..+|.||+|||.+||+|+..
T Consensus 166 ~~~LqLSlvEA~YL~~~G~L~V~-----~~s~~el~~~~~~~~-~~F~~kY~VY~dLR~rG~vvksG 226 (395)
T 4fz2_A 166 GNLNKLDIYETLFLIDMGVISIK-----NFTRAQIVNIASARR-TDIMKLYDVYKDWRTKGYVVKTG 226 (395)
T ss_dssp CCCEEECHHHHHHHHHTTCEEES-----SCCHHHHHHHHHHHC-TTHHHHHHHHHHHHTTTCEEEEE
T ss_pred CcceeecHHHHHHHHhCCCEEee-----cCCHHHHHHHHhhcc-hhhhhhhHHHHHHHHCCCEeCcC
Confidence 56799999999999999999996 389999999988654 46899999999999999999954
No 13
>2ohc_A TRNA-splicing endonuclease; intron, hydrolase; 2.50A {Thermoplasma acidophilum} PDB: 2ohe_A
Probab=97.79 E-value=9.5e-06 Score=72.89 Aligned_cols=65 Identities=14% Similarity=-0.018 Sum_probs=45.2
Q ss_pred cceeecCCeEEEEEeCCCCeEEEEcccCcceeeeeEEeCCeEEEehHHHHHHHhcCcEEEEcCCCcccCHHHHHHHHHhc
Q 027224 35 SKLQFRKDISKAHWNNELGMAEVVEKKGKMWTTTGIVRNGKTYCSIEETLFLAEIGALYLLDNNDLCLPLKEIYEKIANE 114 (226)
Q Consensus 35 ~R~~~~k~~s~a~W~pe~~~a~v~~~rG~~~~~~G~~~~~~l~L~peEALYL~ErG~L~l~~~~g~~LSlqe~y~l~~~~ 114 (226)
.++....+.+. +|++ + +|.|++.+| +.+| |+++||+||++ . .
T Consensus 156 ~~~~l~~~rv~-v~d~------L---~~~yG~~~~---~~~L-Lsl~Ea~yL~~-----------------------~-~ 197 (289)
T 2ohc_A 156 APVVRMGGRSF-GAGD------L---EWWIGTAFH---GFRL-LTENEANYISG-----------------------N-H 197 (289)
T ss_dssp CCCEEETTEEE-EETT------S---CTTSSEEET---TEEE-ECHHHHHHHTT-----------------------C-T
T ss_pred ceEEEeCCEEE-EEch------h---hhhcCCcCC---Cccc-CCHHHHHHHhh-----------------------c-c
Confidence 34444444443 6776 1 666666665 4789 99999999999 1 1
Q ss_pred cCCCCccceeeehhhhcCCeEEeecC
Q 027224 115 KSGCSWELFEVYRHLKSLGYIVGRHG 140 (226)
Q Consensus 115 ~~~~~~~kY~VY~~Lkr~GYiV~R~~ 140 (226)
.++.+ |.||+|||++||+|+..-
T Consensus 198 ~~~~f---y~VY~dLR~rG~vvk~G~ 220 (289)
T 2ohc_A 198 SASQV---DMVYSDLVGRGCIVKTGF 220 (289)
T ss_dssp TSSHH---HHHHHHHHHTTCEEEECG
T ss_pred cchhH---HHHHHHHHHCCCEEcccc
Confidence 11123 999999999999999765
No 14
>2zyz_A Putative uncharacterized protein PAE0789; crenarchaea, heterotetramer, RNA PROC endonuclease, hydrolase, tRNA processing; 1.70A {Pyrobaculum aerophilum}
Probab=92.77 E-value=0.02 Score=44.80 Aligned_cols=21 Identities=24% Similarity=0.284 Sum_probs=19.1
Q ss_pred CCccceeeehhhhcCCeEEee
Q 027224 118 CSWELFEVYRHLKSLGYIVGR 138 (226)
Q Consensus 118 ~~~~kY~VY~~Lkr~GYiV~R 138 (226)
....+|.||++||++||+|+.
T Consensus 21 ~~~l~y~VYkDLR~RG~~vk~ 41 (116)
T 2zyz_A 21 MDVLQEQVFKDLKSRGFKIIE 41 (116)
T ss_dssp CCHHHHHHHHHHHTTTCEEEE
T ss_pred ccceeeHHHHHHHHCCCcccE
Confidence 457789999999999999998
No 15
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=40.01 E-value=11 Score=24.26 Aligned_cols=37 Identities=14% Similarity=0.100 Sum_probs=28.2
Q ss_pred cccCHHHHHHHHHhccCCCCccceeeehhhhcCCeEEeec
Q 027224 100 LCLPLKEIYEKIANEKSGCSWELFEVYRHLKSLGYIVGRH 139 (226)
Q Consensus 100 ~~LSlqe~y~l~~~~~~~~~~~kY~VY~~Lkr~GYiV~R~ 139 (226)
.++|.+++++.+.... .....=.||++|+.+|.+ +-+
T Consensus 18 ~~~t~~el~~~l~~~~--~~vs~~Tv~R~L~~lg~v-~~~ 54 (64)
T 2p5k_A 18 EIETQDELVDMLKQDG--YKVTQATVSRDIKELHLV-KVP 54 (64)
T ss_dssp CCCSHHHHHHHHHHTT--CCCCHHHHHHHHHHHTCE-EEE
T ss_pred CCCCHHHHHHHHHHhC--CCcCHHHHHHHHHHcCCE-EEe
Confidence 3799999999986532 345666899999999987 433
No 16
>1w4t_A Arylamine N-acetyltransferase; 5- aminosalicylic acid, NAT, xenobiotic metabolism, acyltransferase; 1.95A {Pseudomonas aeruginosa} SCOP: d.3.1.5
Probab=27.19 E-value=18 Score=31.78 Aligned_cols=43 Identities=19% Similarity=0.253 Sum_probs=33.5
Q ss_pred CCcccCHHHHHHHHHhc-cCC-CCccceeeehhhhcCCeEEeecC
Q 027224 98 NDLCLPLKEIYEKIANE-KSG-CSWELFEVYRHLKSLGYIVGRHG 140 (226)
Q Consensus 98 ~g~~LSlqe~y~l~~~~-~~~-~~~~kY~VY~~Lkr~GYiV~R~~ 140 (226)
..+.|+++++++++... .+| |+.-.-.-|.-|+.+||-|....
T Consensus 71 ~~i~ld~~~l~~KiV~~~RGGyC~ElN~Lf~~~L~~LGF~V~~l~ 115 (299)
T 1w4t_A 71 RPIEIDADKVFAKVVEGSRGGYCFELNSLFARLLLALGYELELLV 115 (299)
T ss_dssp CCCCCSHHHHHHHHTTTTCCBCHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCCCCCHHHHHHHHHhcCCCcchHhHHHHHHHHHHHcCCeEEEEE
Confidence 45689999999999843 334 56667777889999999998754
No 17
>2ija_A Arylamine N-acetyltransferase 1; arylamide acetylase 1, structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens} PDB: 2pqt_A* 2pfr_A*
Probab=26.00 E-value=19 Score=31.40 Aligned_cols=43 Identities=21% Similarity=0.477 Sum_probs=33.2
Q ss_pred CCcccCHHHHHHHHHhc-cCC-CCccceeeehhhhcCCeEEeecC
Q 027224 98 NDLCLPLKEIYEKIANE-KSG-CSWELFEVYRHLKSLGYIVGRHG 140 (226)
Q Consensus 98 ~g~~LSlqe~y~l~~~~-~~~-~~~~kY~VY~~Lkr~GYiV~R~~ 140 (226)
..+.|+++++++++... .+| |+.-.-.-|.-|+.+||-|....
T Consensus 51 ~~i~ld~~~l~~KiV~~~RGGyC~ElN~Lf~~~L~~LGF~V~~~~ 95 (295)
T 2ija_A 51 DAMDLGLEAIFDQVVRRNRGGWCLQVNHLLYWALTTIGFETTMLG 95 (295)
T ss_dssp CCCCCSHHHHHHHHHTTCCCBCHHHHHHHHHHHHHHHTCEEEEEE
T ss_pred CCCCCCHHHHHHHHhcCCCcEEhHHHHHHHHHHHHHcCCcEEEEE
Confidence 35679999999998843 334 56667777889999999998754
No 18
>1w5r_A Arylamine N-acetyltransferase; acyltransferase; 1.45A {Mycobacterium smegmatis} SCOP: d.3.1.5 PDB: 1w6f_A* 1gx3_A
Probab=23.24 E-value=20 Score=30.99 Aligned_cols=43 Identities=19% Similarity=0.194 Sum_probs=33.0
Q ss_pred CCc-ccCHHHHHHHHHh-ccCC-CCccceeeehhhhcCCeEEeecC
Q 027224 98 NDL-CLPLKEIYEKIAN-EKSG-CSWELFEVYRHLKSLGYIVGRHG 140 (226)
Q Consensus 98 ~g~-~LSlqe~y~l~~~-~~~~-~~~~kY~VY~~Lkr~GYiV~R~~ 140 (226)
..+ .|+++++++++.. +.+| |+.-.-.-|.-|+.+||-|....
T Consensus 50 ~~i~~ld~~~l~~KiV~~~RGGyC~ElN~Lf~~~L~~LGF~V~~~~ 95 (278)
T 1w5r_A 50 IPVADLSAEALFAKLVDRRRGGYQYEHNGLLGYVLEELGFEVERLS 95 (278)
T ss_dssp CCCCCCSHHHHHHHHTTTCCCBCHHHHHHHHHHHHHHHTCEEEEEE
T ss_pred CCCCCCCHHHHHHHHhcCCCceehHHHHHHHHHHHHHcCCeEEEEE
Confidence 356 7899999999874 3334 56666777889999999998754
No 19
>2xtc_A F-box-like/WD repeat-containing protein TBL1X; transcription; 2.22A {Homo sapiens} PDB: 2xte_A 2xtd_A
Probab=23.16 E-value=12 Score=27.84 Aligned_cols=17 Identities=35% Similarity=0.489 Sum_probs=14.3
Q ss_pred cceeeehhhhcCCeEEe
Q 027224 121 ELFEVYRHLKSLGYIVG 137 (226)
Q Consensus 121 ~kY~VY~~Lkr~GYiV~ 137 (226)
-.|.||+||.+.||.--
T Consensus 8 vN~LI~RYLqEsGf~hs 24 (90)
T 2xtc_A 8 VNFLVYRYLQESGFSHS 24 (90)
T ss_dssp HHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHcCCHHH
Confidence 36999999999999753
No 20
>2bsz_A Arylamine N-acetyltransferase 1; acyltransferase, complete proteome; 2.0A {Rhizobium loti} SCOP: d.3.1.5
Probab=23.15 E-value=21 Score=31.01 Aligned_cols=43 Identities=28% Similarity=0.410 Sum_probs=33.4
Q ss_pred CCcccCHHHHHHHHHhc-cCC-CCccceeeehhhhcCCeEEeecC
Q 027224 98 NDLCLPLKEIYEKIANE-KSG-CSWELFEVYRHLKSLGYIVGRHG 140 (226)
Q Consensus 98 ~g~~LSlqe~y~l~~~~-~~~-~~~~kY~VY~~Lkr~GYiV~R~~ 140 (226)
..+.|+++++++++... .+| |+.-.-.-|.-|+.+||-|....
T Consensus 51 ~~i~ld~~~l~~KiV~~~RGGyC~ElN~Lf~~~L~~LGF~V~~~~ 95 (278)
T 2bsz_A 51 RPVRLDLAALQDKIVLGGRGGYCFEHNLLFMHALKALGFEVGGLA 95 (278)
T ss_dssp CCCCCSHHHHHHHHTTSCCCBCHHHHHHHHHHHHHHHTCEEEEEE
T ss_pred CCCCCCHHHHHHHHHhCCCCeehHHHHHHHHHHHHHCCCeEEEEE
Confidence 35689999999998743 334 56667777889999999998754
No 21
>3d9w_A Putative acetyltransferase; arylamine N-acetyltransferase, NAT, X-RAY diffraction, acyltransferase; 2.70A {Nocardia farcinica}
Probab=22.42 E-value=22 Score=31.05 Aligned_cols=43 Identities=23% Similarity=0.334 Sum_probs=34.0
Q ss_pred CCcccCHHHHHHHHHhc-cCC-CCccceeeehhhhcCCeEEeecC
Q 027224 98 NDLCLPLKEIYEKIANE-KSG-CSWELFEVYRHLKSLGYIVGRHG 140 (226)
Q Consensus 98 ~g~~LSlqe~y~l~~~~-~~~-~~~~kY~VY~~Lkr~GYiV~R~~ 140 (226)
..+.|+++++++++... .+| |+.-.-.-|.-|+.+||-|....
T Consensus 60 ~~i~Ld~~~l~~KiV~~~RGGyC~ElN~Lf~~~L~~LGF~V~~~~ 104 (293)
T 3d9w_A 60 RPVRLDLATLQDKLVHSRRGGYCYENAGLFAAALERLGFGVTGHT 104 (293)
T ss_dssp CCCCCSHHHHHHHHTSSSCCBCHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCCCCCHHHHHHHHHHcCCCcChHHHHHHHHHHHHHcCCeEEEEE
Confidence 34679999999988753 333 67778888999999999998764
No 22
>2vfb_A Arylamine N-acetyltransferase; NAT, acetyl COA, mycobacteria, actyltransferase; 2.00A {Mycobacterium marinum} PDB: 2vfc_A* 3ltw_A*
Probab=21.84 E-value=23 Score=30.73 Aligned_cols=43 Identities=23% Similarity=0.291 Sum_probs=33.0
Q ss_pred CCc-ccCHHHHHHHHHh-ccCC-CCccceeeehhhhcCCeEEeecC
Q 027224 98 NDL-CLPLKEIYEKIAN-EKSG-CSWELFEVYRHLKSLGYIVGRHG 140 (226)
Q Consensus 98 ~g~-~LSlqe~y~l~~~-~~~~-~~~~kY~VY~~Lkr~GYiV~R~~ 140 (226)
..+ .|+++++++++.. +.+| |+.-.-.-|.-|+.+||-|....
T Consensus 47 ~~i~~ld~~~l~~KiV~~~RGGyC~ElN~Lf~~~L~~LGF~V~~~~ 92 (280)
T 2vfb_A 47 VPVDDLSAEALADKLVDRRRGGYCYEHNGLIGYVLAELGYRVRRLA 92 (280)
T ss_dssp CCCCCCSHHHHHHHHTTTCCCBCHHHHHHHHHHHHHHHTCEEEEEE
T ss_pred CCCCCCCHHHHHHHHhcCCCceEhHHHHHHHHHHHHHCCCeEEEEE
Confidence 346 7899999999874 3334 56666777889999999998754
No 23
>3bl4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; 2.20A {Arthrobacter SP}
Probab=20.32 E-value=22 Score=27.45 Aligned_cols=51 Identities=12% Similarity=0.077 Sum_probs=35.4
Q ss_pred HHHHHhcCcEEEEcCCCcccCHHHHHHHHHhccCCCCccceeeehhhhcCC
Q 027224 83 TLFLAEIGALYLLDNNDLCLPLKEIYEKIANEKSGCSWELFEVYRHLKSLG 133 (226)
Q Consensus 83 ALYL~ErG~L~l~~~~g~~LSlqe~y~l~~~~~~~~~~~kY~VY~~Lkr~G 133 (226)
++++.+.|.|.+.+..|.+++++++-+.+.....=.--..|.|..++++.+
T Consensus 13 ~~~~~~dGIl~~~~~~~~~i~~e~A~~~~~~~~~l~~~~~~~vL~D~r~~~ 63 (124)
T 3bl4_A 13 GLTLGGDGILRLTWPRGAAITAADAERAMLRVNQLCGDDRHPMLVDMATTA 63 (124)
T ss_dssp TEEECTTSCEEEECSSSSCCCHHHHHHHHHHHHHHHTTCCEEEEEECCSST
T ss_pred eEEEcCCCEEEEEEcCCCccCHHHHHHHHHHHHHHhCCCceEEEEEccccc
Confidence 355667899999977777899999888765422100124688888887764
Done!