Query 027226
Match_columns 226
No_of_seqs 226 out of 1275
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 06:49:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027226.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027226hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK08410 2-hydroxyacid dehydro 100.0 7.2E-42 1.6E-46 296.4 20.2 204 13-221 1-221 (311)
2 PLN02928 oxidoreductase family 100.0 1.6E-41 3.4E-46 298.1 21.2 220 2-221 8-251 (347)
3 COG0111 SerA Phosphoglycerate 100.0 7.9E-42 1.7E-46 296.5 17.0 204 11-221 2-222 (324)
4 PRK06487 glycerate dehydrogena 100.0 3.1E-41 6.8E-46 293.1 20.3 206 13-221 1-222 (317)
5 PRK06932 glycerate dehydrogena 100.0 4.4E-41 9.5E-46 291.8 17.9 174 45-221 34-222 (314)
6 PRK15409 bifunctional glyoxyla 100.0 7.1E-41 1.5E-45 291.2 16.6 203 12-221 2-225 (323)
7 COG1052 LdhA Lactate dehydroge 100.0 5.7E-40 1.2E-44 284.7 18.9 170 48-220 37-224 (324)
8 PRK11790 D-3-phosphoglycerate 100.0 1.8E-39 3.8E-44 290.6 20.3 212 4-221 2-228 (409)
9 PRK13243 glyoxylate reductase; 100.0 1.9E-38 4.2E-43 277.4 19.1 202 13-221 3-229 (333)
10 PLN02306 hydroxypyruvate reduc 100.0 1.8E-36 4E-41 268.6 19.9 207 10-221 13-261 (386)
11 PRK13581 D-3-phosphoglycerate 100.0 1.5E-36 3.3E-41 279.6 19.3 202 13-221 1-219 (526)
12 PRK07574 formate dehydrogenase 100.0 2.7E-36 5.8E-41 267.1 17.5 172 47-221 82-273 (385)
13 TIGR01327 PGDH D-3-phosphoglyc 100.0 4E-36 8.7E-41 276.8 19.2 202 14-221 1-218 (525)
14 KOG0068 D-3-phosphoglycerate d 100.0 1.5E-36 3.3E-41 257.0 14.5 206 9-220 3-224 (406)
15 PLN03139 formate dehydrogenase 100.0 5E-36 1.1E-40 265.3 17.8 171 47-220 89-279 (386)
16 PRK12480 D-lactate dehydrogena 100.0 4.6E-36 1E-40 261.9 17.1 204 12-220 1-222 (330)
17 PRK15469 ghrA bifunctional gly 100.0 1.3E-34 2.8E-39 250.9 18.6 199 13-221 1-215 (312)
18 PRK08605 D-lactate dehydrogena 100.0 4.5E-34 9.8E-39 249.8 18.6 179 26-208 14-207 (332)
19 PRK06436 glycerate dehydrogena 100.0 8.7E-34 1.9E-38 244.6 19.4 190 13-221 1-198 (303)
20 PRK15438 erythronate-4-phospha 100.0 1.7E-33 3.8E-38 248.2 19.2 183 13-221 1-196 (378)
21 PRK00257 erythronate-4-phospha 100.0 1.5E-32 3.2E-37 243.0 19.2 183 13-221 1-196 (381)
22 KOG0069 Glyoxylate/hydroxypyru 100.0 2.4E-31 5.3E-36 229.1 12.7 169 50-221 55-242 (336)
23 PF02826 2-Hacid_dh_C: D-isome 99.9 5E-23 1.1E-27 165.3 6.6 101 121-221 1-116 (178)
24 TIGR02853 spore_dpaA dipicolin 99.7 1.7E-17 3.8E-22 142.5 11.0 142 52-218 51-226 (287)
25 PF00389 2-Hacid_dh: D-isomer 99.7 2.9E-17 6.3E-22 125.6 6.5 99 15-120 1-101 (133)
26 KOG0067 Transcription factor C 99.7 4.1E-17 8.9E-22 140.5 7.0 143 63-208 82-240 (435)
27 PTZ00075 Adenosylhomocysteinas 99.6 8.2E-15 1.8E-19 132.3 8.9 130 75-219 189-328 (476)
28 PRK08306 dipicolinate synthase 99.5 8.3E-13 1.8E-17 114.0 13.1 146 51-217 51-226 (296)
29 PRK13403 ketol-acid reductoiso 99.1 3.2E-11 6.9E-16 104.2 3.8 71 148-218 11-92 (335)
30 PRK05476 S-adenosyl-L-homocyst 98.8 9.3E-09 2E-13 92.6 6.8 124 81-219 154-286 (425)
31 PLN02494 adenosylhomocysteinas 98.8 9.4E-09 2E-13 93.1 5.9 72 149-220 250-329 (477)
32 PF00670 AdoHcyase_NAD: S-aden 98.6 1.7E-08 3.6E-13 79.3 3.0 73 148-220 18-98 (162)
33 TIGR00936 ahcY adenosylhomocys 98.6 4.8E-08 1E-12 87.5 5.4 72 148-219 190-269 (406)
34 PRK05479 ketol-acid reductoiso 98.5 2E-07 4.3E-12 81.5 5.7 61 148-208 12-80 (330)
35 cd01075 NAD_bind_Leu_Phe_Val_D 98.3 6E-07 1.3E-11 73.4 4.5 70 148-217 23-101 (200)
36 TIGR00465 ilvC ketol-acid redu 98.3 1.4E-06 3E-11 76.0 5.7 58 151-208 1-66 (314)
37 cd00401 AdoHcyase S-adenosyl-L 98.1 4.1E-06 8.8E-11 75.5 5.9 61 148-208 197-264 (413)
38 PF03446 NAD_binding_2: NAD bi 98.1 1.4E-06 2.9E-11 68.8 2.3 55 154-208 2-64 (163)
39 PRK05225 ketol-acid reductoiso 98.1 2.4E-06 5.1E-11 77.1 3.4 61 148-208 31-104 (487)
40 PRK14619 NAD(P)H-dependent gly 98.0 1.4E-05 2.9E-10 69.5 6.3 52 152-208 3-54 (308)
41 PF07991 IlvN: Acetohydroxy ac 98.0 8.5E-06 1.8E-10 63.9 4.1 58 151-208 2-67 (165)
42 PLN02712 arogenate dehydrogena 97.9 1.5E-05 3.2E-10 76.1 6.1 62 147-208 363-432 (667)
43 TIGR01505 tartro_sem_red 2-hyd 97.9 1.2E-05 2.7E-10 69.1 3.7 54 155-208 1-62 (291)
44 PRK11559 garR tartronate semia 97.8 2.1E-05 4.6E-10 67.7 4.3 55 154-208 3-65 (296)
45 TIGR00518 alaDH alanine dehydr 97.8 0.00039 8.4E-09 62.1 11.9 149 55-208 66-237 (370)
46 PLN02256 arogenate dehydrogena 97.8 4E-05 8.7E-10 66.6 5.3 58 151-208 34-99 (304)
47 cd01080 NAD_bind_m-THF_DH_Cycl 97.8 7.4E-05 1.6E-09 59.4 6.2 66 149-220 40-107 (168)
48 PRK14189 bifunctional 5,10-met 97.7 7.4E-05 1.6E-09 64.1 6.4 68 148-221 153-222 (285)
49 PF03807 F420_oxidored: NADP o 97.7 1.5E-05 3.2E-10 56.9 1.8 54 155-208 1-68 (96)
50 PRK14194 bifunctional 5,10-met 97.7 0.00012 2.5E-09 63.3 6.8 66 148-219 154-221 (301)
51 PRK11199 tyrA bifunctional cho 97.7 0.00018 3.9E-09 64.2 8.2 52 152-208 97-149 (374)
52 PRK08818 prephenate dehydrogen 97.6 0.00013 2.9E-09 64.9 6.7 55 151-208 2-58 (370)
53 PRK15461 NADH-dependent gamma- 97.6 7.1E-05 1.5E-09 64.7 4.8 55 154-208 2-64 (296)
54 COG0499 SAM1 S-adenosylhomocys 97.6 6.8E-05 1.5E-09 65.6 4.4 71 149-219 205-283 (420)
55 cd01076 NAD_bind_1_Glu_DH NAD( 97.6 0.0002 4.4E-09 59.6 6.5 37 149-185 27-63 (227)
56 PF01488 Shikimate_DH: Shikima 97.6 5.6E-05 1.2E-09 57.8 2.9 63 149-211 8-85 (135)
57 PRK06545 prephenate dehydrogen 97.5 0.00013 2.9E-09 64.8 5.0 55 154-208 1-67 (359)
58 PLN02712 arogenate dehydrogena 97.5 0.00011 2.4E-09 70.2 4.8 60 149-208 48-115 (667)
59 PRK14175 bifunctional 5,10-met 97.5 0.00028 6.1E-09 60.6 6.4 67 148-220 153-221 (286)
60 PRK07417 arogenate dehydrogena 97.5 0.00012 2.7E-09 62.6 4.2 54 155-208 2-64 (279)
61 PRK13302 putative L-aspartate 97.5 0.00018 3.9E-09 61.5 5.0 58 152-209 5-75 (271)
62 PRK12490 6-phosphogluconate de 97.5 0.00012 2.6E-09 63.3 3.9 54 155-208 2-66 (299)
63 cd01065 NAD_bind_Shikimate_DH 97.4 0.00026 5.5E-09 54.8 4.9 64 150-213 16-93 (155)
64 KOG1370 S-adenosylhomocysteine 97.4 0.00016 3.5E-09 62.0 3.8 70 150-219 211-288 (434)
65 PRK09599 6-phosphogluconate de 97.4 0.00018 3.8E-09 62.3 3.9 54 155-208 2-66 (301)
66 PRK14188 bifunctional 5,10-met 97.3 0.00056 1.2E-08 59.1 6.7 65 148-219 153-220 (296)
67 COG2085 Predicted dinucleotide 97.3 0.00043 9.2E-09 56.6 5.5 55 154-208 2-67 (211)
68 PF10727 Rossmann-like: Rossma 97.3 0.00013 2.8E-09 55.3 2.2 59 151-209 8-76 (127)
69 cd05313 NAD_bind_2_Glu_DH NAD( 97.3 0.00076 1.7E-08 57.0 7.0 37 148-184 33-69 (254)
70 TIGR01035 hemA glutamyl-tRNA r 97.3 0.00019 4.2E-09 65.0 3.5 59 150-208 177-247 (417)
71 PRK07502 cyclohexadienyl dehyd 97.3 0.00049 1.1E-08 59.6 5.8 59 152-210 5-75 (307)
72 KOG0023 Alcohol dehydrogenase, 97.3 0.00028 6E-09 61.0 3.8 37 152-188 181-217 (360)
73 PRK15059 tartronate semialdehy 97.2 0.00041 8.8E-09 59.9 4.6 54 155-208 2-62 (292)
74 TIGR00872 gnd_rel 6-phosphoglu 97.2 0.00028 6.2E-09 61.0 3.6 56 155-210 2-68 (298)
75 PRK14192 bifunctional 5,10-met 97.2 0.0012 2.5E-08 56.9 7.0 67 148-220 154-222 (283)
76 cd05211 NAD_bind_Glu_Leu_Phe_V 97.2 0.0012 2.5E-08 54.7 6.5 37 149-185 19-55 (217)
77 COG2084 MmsB 3-hydroxyisobutyr 97.2 0.00067 1.5E-08 58.3 5.1 55 154-208 1-64 (286)
78 COG0059 IlvC Ketol-acid reduct 97.2 0.00079 1.7E-08 57.8 5.4 60 149-208 14-81 (338)
79 PLN02545 3-hydroxybutyryl-CoA 97.2 0.00046 9.9E-09 59.5 4.1 34 154-187 5-38 (295)
80 PRK14179 bifunctional 5,10-met 97.1 0.0011 2.3E-08 57.0 6.2 68 148-221 153-222 (284)
81 PRK07066 3-hydroxybutyryl-CoA 97.1 0.00045 9.8E-09 60.5 3.7 34 154-187 8-41 (321)
82 PRK09260 3-hydroxybutyryl-CoA 97.1 0.00043 9.2E-09 59.5 3.5 34 154-187 2-35 (288)
83 COG0026 PurK Phosphoribosylami 97.1 0.00094 2E-08 58.8 5.5 56 153-208 1-69 (375)
84 PLN02858 fructose-bisphosphate 97.1 0.00046 1E-08 70.9 4.1 56 153-208 324-387 (1378)
85 PLN02688 pyrroline-5-carboxyla 97.1 0.00058 1.3E-08 57.8 4.0 54 155-208 2-68 (266)
86 COG1712 Predicted dinucleotide 97.1 0.00077 1.7E-08 55.6 4.5 54 155-208 2-67 (255)
87 PRK10792 bifunctional 5,10-met 97.1 0.0015 3.3E-08 56.0 6.4 68 148-221 154-223 (285)
88 PF02882 THF_DHG_CYH_C: Tetrah 97.0 0.0027 5.9E-08 50.0 7.0 68 148-221 31-100 (160)
89 PRK11880 pyrroline-5-carboxyla 97.0 0.00077 1.7E-08 57.1 4.1 55 154-208 3-69 (267)
90 PRK00258 aroE shikimate 5-dehy 97.0 0.00061 1.3E-08 58.4 3.5 40 149-188 119-159 (278)
91 PRK14618 NAD(P)H-dependent gly 97.0 0.00078 1.7E-08 58.9 4.3 55 154-208 5-81 (328)
92 cd05213 NAD_bind_Glutamyl_tRNA 97.0 0.00062 1.3E-08 59.3 3.3 61 150-210 175-247 (311)
93 PRK07679 pyrroline-5-carboxyla 97.0 0.0012 2.6E-08 56.5 4.9 56 153-208 3-72 (279)
94 PRK08507 prephenate dehydrogen 97.0 0.00099 2.1E-08 56.9 4.4 53 155-208 2-65 (275)
95 PRK00045 hemA glutamyl-tRNA re 97.0 0.00076 1.6E-08 61.2 3.9 59 150-208 179-249 (423)
96 cd05191 NAD_bind_amino_acid_DH 97.0 0.0017 3.8E-08 45.5 4.9 36 149-184 19-55 (86)
97 PRK14806 bifunctional cyclohex 96.9 0.0014 2.9E-08 63.5 5.7 55 154-208 4-70 (735)
98 PRK06129 3-hydroxyacyl-CoA deh 96.9 0.0014 3.1E-08 56.9 5.3 33 154-186 3-35 (308)
99 PRK14176 bifunctional 5,10-met 96.9 0.0025 5.4E-08 54.8 6.5 68 148-221 159-228 (287)
100 PRK14031 glutamate dehydrogena 96.9 0.0015 3.3E-08 59.4 5.3 38 148-185 223-260 (444)
101 PRK11064 wecC UDP-N-acetyl-D-m 96.9 0.0011 2.5E-08 60.0 4.5 35 154-188 4-38 (415)
102 PRK08655 prephenate dehydrogen 96.9 0.0014 3E-08 59.8 5.0 54 155-208 2-65 (437)
103 PF13241 NAD_binding_7: Putati 96.9 0.00086 1.9E-08 48.8 3.0 60 150-209 4-68 (103)
104 PRK09414 glutamate dehydrogena 96.9 0.0016 3.4E-08 59.4 5.1 37 148-184 227-263 (445)
105 PLN02477 glutamate dehydrogena 96.9 0.003 6.4E-08 57.1 6.8 38 148-185 201-238 (410)
106 PRK12491 pyrroline-5-carboxyla 96.9 0.0011 2.4E-08 56.7 3.8 55 154-208 3-70 (272)
107 PRK06019 phosphoribosylaminoim 96.8 0.0021 4.7E-08 57.2 5.7 55 153-207 2-69 (372)
108 PRK05472 redox-sensing transcr 96.8 0.002 4.3E-08 53.0 5.0 81 112-208 59-153 (213)
109 PRK07531 bifunctional 3-hydrox 96.8 0.0016 3.4E-08 60.4 4.7 34 154-187 5-38 (495)
110 PRK06130 3-hydroxybutyryl-CoA 96.8 0.0016 3.6E-08 56.4 4.6 33 154-186 5-37 (311)
111 PRK14982 acyl-ACP reductase; P 96.8 0.0024 5.3E-08 56.2 5.3 76 148-223 150-240 (340)
112 TIGR01921 DAP-DH diaminopimela 96.8 0.003 6.6E-08 55.2 5.9 55 154-208 4-67 (324)
113 COG0287 TyrA Prephenate dehydr 96.8 0.0025 5.4E-08 54.7 5.2 56 153-208 3-71 (279)
114 PLN02858 fructose-bisphosphate 96.7 0.0015 3.3E-08 67.2 4.3 57 152-208 3-67 (1378)
115 TIGR01692 HIBADH 3-hydroxyisob 96.7 0.0011 2.3E-08 57.1 2.7 51 158-208 1-59 (288)
116 PLN00203 glutamyl-tRNA reducta 96.7 0.0016 3.4E-08 60.6 3.9 59 150-208 263-336 (519)
117 PRK14178 bifunctional 5,10-met 96.7 0.0036 7.8E-08 53.6 5.7 68 148-221 147-216 (279)
118 PRK06718 precorrin-2 dehydroge 96.7 0.0026 5.6E-08 52.1 4.7 39 149-187 6-44 (202)
119 PTZ00142 6-phosphogluconate de 96.7 0.0019 4.2E-08 59.4 4.3 55 154-208 2-73 (470)
120 PRK14191 bifunctional 5,10-met 96.7 0.0048 1E-07 53.0 6.3 68 148-221 152-221 (285)
121 cd05212 NAD_bind_m-THF_DH_Cycl 96.7 0.0088 1.9E-07 46.1 7.2 68 148-221 23-92 (140)
122 PRK13304 L-aspartate dehydroge 96.7 0.0023 5E-08 54.5 4.4 55 154-208 2-68 (265)
123 TIGR00561 pntA NAD(P) transhyd 96.7 0.037 8E-07 51.4 12.4 126 55-187 64-198 (511)
124 PRK06719 precorrin-2 dehydroge 96.6 0.0032 7E-08 49.4 4.7 40 148-187 8-47 (157)
125 PRK09424 pntA NAD(P) transhydr 96.6 0.024 5.2E-07 52.7 11.0 124 55-187 65-199 (509)
126 PRK06928 pyrroline-5-carboxyla 96.6 0.0024 5.2E-08 54.7 4.2 55 154-208 2-71 (277)
127 PTZ00431 pyrroline carboxylate 96.6 0.0048 1E-07 52.3 5.9 56 153-208 3-64 (260)
128 PRK01710 murD UDP-N-acetylmura 96.6 0.0029 6.3E-08 57.9 4.9 39 149-187 10-48 (458)
129 PRK06476 pyrroline-5-carboxyla 96.6 0.0017 3.6E-08 54.9 3.0 55 155-209 2-69 (258)
130 cd01078 NAD_bind_H4MPT_DH NADP 96.6 0.0038 8.3E-08 50.4 5.0 63 148-210 23-106 (194)
131 TIGR03026 NDP-sugDHase nucleot 96.6 0.003 6.6E-08 57.1 4.7 33 155-187 2-34 (411)
132 TIGR01915 npdG NADPH-dependent 96.6 0.0031 6.8E-08 52.0 4.4 54 155-208 2-75 (219)
133 PRK14030 glutamate dehydrogena 96.6 0.0068 1.5E-07 55.2 6.8 35 148-182 223-257 (445)
134 PLN02350 phosphogluconate dehy 96.5 0.0022 4.7E-08 59.3 3.5 55 154-208 7-79 (493)
135 PRK00094 gpsA NAD(P)H-dependen 96.5 0.0039 8.3E-08 54.1 4.9 55 154-208 2-78 (325)
136 PRK13940 glutamyl-tRNA reducta 96.5 0.0031 6.7E-08 57.1 4.3 61 149-209 177-250 (414)
137 TIGR02356 adenyl_thiF thiazole 96.5 0.00088 1.9E-08 54.7 0.7 44 142-185 10-54 (202)
138 PRK09310 aroDE bifunctional 3- 96.5 0.004 8.7E-08 57.5 5.1 40 148-187 327-366 (477)
139 PRK07680 late competence prote 96.5 0.0025 5.5E-08 54.3 3.5 54 155-208 2-69 (273)
140 PRK13301 putative L-aspartate 96.5 0.0056 1.2E-07 52.0 5.4 55 154-208 3-69 (267)
141 PRK08293 3-hydroxybutyryl-CoA 96.4 0.0061 1.3E-07 52.4 5.5 34 154-187 4-37 (287)
142 PRK00676 hemA glutamyl-tRNA re 96.4 0.0078 1.7E-07 53.0 6.2 58 149-207 170-232 (338)
143 PF01210 NAD_Gly3P_dh_N: NAD-d 96.4 0.0025 5.3E-08 49.9 2.8 58 155-212 1-80 (157)
144 PF03721 UDPG_MGDP_dh_N: UDP-g 96.4 0.0014 3E-08 52.9 1.4 34 154-187 1-34 (185)
145 cd01079 NAD_bind_m-THF_DH NAD 96.4 0.013 2.8E-07 47.5 6.9 74 147-220 56-147 (197)
146 PF02737 3HCDH_N: 3-hydroxyacy 96.4 0.0045 9.7E-08 49.6 4.2 34 155-188 1-34 (180)
147 COG1064 AdhP Zn-dependent alco 96.4 0.0055 1.2E-07 53.8 4.9 37 152-188 166-202 (339)
148 PRK05690 molybdopterin biosynt 96.4 0.0034 7.4E-08 52.9 3.5 53 133-185 12-65 (245)
149 PRK12549 shikimate 5-dehydroge 96.3 0.0056 1.2E-07 52.7 4.7 39 150-188 124-163 (284)
150 KOG0409 Predicted dehydrogenas 96.3 0.0048 1E-07 53.0 4.1 60 149-208 31-98 (327)
151 COG0771 MurD UDP-N-acetylmuram 96.3 0.0098 2.1E-07 54.3 6.3 39 150-188 4-42 (448)
152 PRK07634 pyrroline-5-carboxyla 96.3 0.0067 1.4E-07 50.6 4.7 57 152-208 3-73 (245)
153 COG0569 TrkA K+ transport syst 96.3 0.0044 9.6E-08 51.5 3.6 62 154-215 1-80 (225)
154 cd00757 ThiF_MoeB_HesA_family 96.2 0.0015 3.3E-08 54.3 0.8 44 142-185 10-54 (228)
155 TIGR01546 GAPDH-II_archae glyc 96.2 0.0057 1.2E-07 53.8 4.3 53 156-208 1-82 (333)
156 PTZ00079 NADP-specific glutama 96.2 0.0083 1.8E-07 54.7 5.3 38 148-185 232-269 (454)
157 PRK14183 bifunctional 5,10-met 96.1 0.016 3.4E-07 49.7 6.5 68 148-221 152-221 (281)
158 PRK06035 3-hydroxyacyl-CoA deh 96.1 0.0071 1.5E-07 52.0 4.4 34 154-187 4-37 (291)
159 COG0373 HemA Glutamyl-tRNA red 96.1 0.0063 1.4E-07 54.9 4.0 60 149-208 174-245 (414)
160 TIGR01470 cysG_Nterm siroheme 96.1 0.013 2.8E-07 48.1 5.5 40 149-188 5-44 (205)
161 PRK12475 thiamine/molybdopteri 96.1 0.0049 1.1E-07 54.4 3.1 45 142-186 13-58 (338)
162 cd01492 Aos1_SUMO Ubiquitin ac 96.1 0.0038 8.1E-08 50.9 2.2 43 143-185 11-54 (197)
163 PRK14170 bifunctional 5,10-met 96.0 0.02 4.4E-07 49.1 6.5 68 148-221 152-221 (284)
164 COG0334 GdhA Glutamate dehydro 96.0 0.013 2.8E-07 52.5 5.3 39 149-187 203-241 (411)
165 PRK01368 murD UDP-N-acetylmura 95.9 0.016 3.6E-07 53.1 6.0 34 151-185 4-37 (454)
166 PLN02272 glyceraldehyde-3-phos 95.9 0.0093 2E-07 53.8 4.2 32 154-185 86-119 (421)
167 PRK00683 murD UDP-N-acetylmura 95.9 0.011 2.4E-07 53.5 4.7 57 153-209 3-67 (418)
168 PF01113 DapB_N: Dihydrodipico 95.9 0.016 3.4E-07 43.6 4.8 54 155-208 2-74 (124)
169 COG0540 PyrB Aspartate carbamo 95.9 0.064 1.4E-06 46.4 9.0 127 70-220 97-245 (316)
170 COG0190 FolD 5,10-methylene-te 95.9 0.026 5.7E-07 48.2 6.6 68 148-221 151-220 (283)
171 PRK08328 hypothetical protein; 95.9 0.0083 1.8E-07 50.0 3.6 43 143-185 17-60 (231)
172 PRK14187 bifunctional 5,10-met 95.9 0.026 5.6E-07 48.7 6.6 68 148-221 155-224 (294)
173 KOG2380 Prephenate dehydrogena 95.9 0.0072 1.6E-07 52.9 3.2 56 153-208 52-115 (480)
174 TIGR01809 Shik-DH-AROM shikima 95.9 0.0051 1.1E-07 52.9 2.2 38 150-187 122-160 (282)
175 PRK02472 murD UDP-N-acetylmura 95.8 0.013 2.8E-07 53.2 5.0 36 151-186 3-38 (447)
176 PRK07530 3-hydroxybutyryl-CoA 95.8 0.012 2.5E-07 50.7 4.4 34 154-187 5-38 (292)
177 PRK14166 bifunctional 5,10-met 95.8 0.026 5.6E-07 48.5 6.4 68 148-221 152-221 (282)
178 TIGR01161 purK phosphoribosyla 95.8 0.014 3E-07 51.5 4.9 53 155-207 1-66 (352)
179 PF00044 Gp_dh_N: Glyceraldehy 95.8 0.013 2.8E-07 45.7 4.0 32 155-186 2-34 (151)
180 PRK14186 bifunctional 5,10-met 95.8 0.03 6.5E-07 48.4 6.6 68 148-221 153-222 (297)
181 PRK07819 3-hydroxybutyryl-CoA 95.7 0.012 2.5E-07 50.7 4.0 35 154-188 6-40 (286)
182 PRK06141 ornithine cyclodeamin 95.7 0.015 3.2E-07 50.8 4.7 58 152-209 124-197 (314)
183 PRK14169 bifunctional 5,10-met 95.7 0.032 6.9E-07 47.9 6.6 68 148-221 151-220 (282)
184 PRK03369 murD UDP-N-acetylmura 95.7 0.014 2.9E-07 54.1 4.6 36 150-185 9-44 (488)
185 PRK14106 murD UDP-N-acetylmura 95.7 0.016 3.4E-07 52.8 4.9 37 150-186 2-38 (450)
186 PF00208 ELFV_dehydrog: Glutam 95.7 0.013 2.9E-07 49.3 4.1 34 149-182 28-61 (244)
187 PRK14172 bifunctional 5,10-met 95.7 0.032 7E-07 47.8 6.4 68 148-221 153-222 (278)
188 PRK14177 bifunctional 5,10-met 95.7 0.034 7.5E-07 47.7 6.5 68 148-221 154-223 (284)
189 PRK05808 3-hydroxybutyryl-CoA 95.7 0.012 2.6E-07 50.3 3.7 34 154-187 4-37 (282)
190 PRK07688 thiamine/molybdopteri 95.6 0.0079 1.7E-07 53.1 2.7 44 142-185 13-57 (339)
191 PRK01390 murD UDP-N-acetylmura 95.6 0.015 3.2E-07 53.3 4.5 37 150-186 6-42 (460)
192 PRK14180 bifunctional 5,10-met 95.6 0.038 8.2E-07 47.5 6.5 68 148-221 153-222 (282)
193 PRK14173 bifunctional 5,10-met 95.6 0.039 8.5E-07 47.5 6.6 68 148-221 150-219 (287)
194 COG1748 LYS9 Saccharopine dehy 95.6 0.014 3E-07 52.3 3.9 55 154-208 2-75 (389)
195 PRK00048 dihydrodipicolinate r 95.6 0.035 7.6E-07 47.0 6.2 55 154-208 2-67 (257)
196 PRK02006 murD UDP-N-acetylmura 95.5 0.018 3.9E-07 53.3 4.7 36 151-186 5-40 (498)
197 PRK01438 murD UDP-N-acetylmura 95.5 0.021 4.5E-07 52.6 5.1 39 148-186 11-49 (480)
198 PLN02516 methylenetetrahydrofo 95.5 0.041 9E-07 47.6 6.5 68 148-221 162-231 (299)
199 TIGR00873 gnd 6-phosphoglucona 95.5 0.011 2.4E-07 54.4 3.2 32 156-187 2-33 (467)
200 TIGR02354 thiF_fam2 thiamine b 95.5 0.019 4E-07 46.9 4.2 38 148-185 16-54 (200)
201 PLN02948 phosphoribosylaminoim 95.5 0.025 5.5E-07 53.4 5.7 61 148-208 17-90 (577)
202 PRK00141 murD UDP-N-acetylmura 95.5 0.019 4.2E-07 52.9 4.8 38 149-186 11-48 (473)
203 PRK14171 bifunctional 5,10-met 95.5 0.04 8.8E-07 47.4 6.3 68 148-221 154-223 (288)
204 PRK00066 ldh L-lactate dehydro 95.5 0.036 7.8E-07 48.4 6.1 56 152-208 5-80 (315)
205 COG1023 Gnd Predicted 6-phosph 95.5 0.0099 2.1E-07 49.7 2.3 55 154-208 1-66 (300)
206 PRK09496 trkA potassium transp 95.4 0.014 3.1E-07 53.0 3.6 58 155-212 2-76 (453)
207 PRK05597 molybdopterin biosynt 95.4 0.01 2.2E-07 52.7 2.6 52 134-185 9-61 (355)
208 COG0345 ProC Pyrroline-5-carbo 95.4 0.02 4.4E-07 48.8 4.2 55 154-208 2-69 (266)
209 PRK04690 murD UDP-N-acetylmura 95.4 0.023 5E-07 52.3 4.9 36 151-186 6-41 (468)
210 PF13478 XdhC_C: XdhC Rossmann 95.4 0.016 3.5E-07 44.4 3.2 32 156-187 1-32 (136)
211 PRK07340 ornithine cyclodeamin 95.4 0.025 5.5E-07 49.1 4.8 58 151-208 123-195 (304)
212 PF00899 ThiF: ThiF family; I 95.3 0.018 3.9E-07 43.7 3.3 33 153-185 2-35 (135)
213 PRK14182 bifunctional 5,10-met 95.3 0.057 1.2E-06 46.4 6.6 68 148-221 152-221 (282)
214 PRK14181 bifunctional 5,10-met 95.3 0.058 1.3E-06 46.4 6.7 68 148-221 148-221 (287)
215 PRK05600 thiamine biosynthesis 95.2 0.013 2.8E-07 52.4 2.6 54 132-185 20-74 (370)
216 PF01408 GFO_IDH_MocA: Oxidore 95.2 0.014 2.9E-07 43.0 2.3 54 155-208 2-69 (120)
217 PRK14193 bifunctional 5,10-met 95.2 0.064 1.4E-06 46.1 6.6 68 148-221 153-224 (284)
218 PLN02616 tetrahydrofolate dehy 95.2 0.055 1.2E-06 47.9 6.3 68 148-221 226-295 (364)
219 PLN02897 tetrahydrofolate dehy 95.2 0.053 1.2E-06 47.7 6.2 68 148-221 209-278 (345)
220 PRK04308 murD UDP-N-acetylmura 95.2 0.033 7.1E-07 50.7 5.1 38 151-188 3-40 (445)
221 COG0057 GapA Glyceraldehyde-3- 95.1 0.026 5.7E-07 49.2 4.0 32 154-185 2-35 (335)
222 PF00070 Pyr_redox: Pyridine n 95.1 0.045 9.8E-07 37.5 4.5 35 155-189 1-35 (80)
223 PRK14190 bifunctional 5,10-met 95.1 0.062 1.3E-06 46.2 6.2 68 148-221 153-222 (284)
224 TIGR03026 NDP-sugDHase nucleot 95.1 0.06 1.3E-06 48.7 6.4 60 150-209 310-384 (411)
225 PF13460 NAD_binding_10: NADH( 95.0 0.027 5.8E-07 44.4 3.6 53 156-208 1-67 (183)
226 COG0677 WecC UDP-N-acetyl-D-ma 95.0 0.01 2.2E-07 53.0 1.2 34 154-187 10-43 (436)
227 TIGR02992 ectoine_eutC ectoine 95.0 0.038 8.2E-07 48.5 4.7 57 152-208 128-201 (326)
228 PRK11064 wecC UDP-N-acetyl-D-m 95.0 0.061 1.3E-06 48.8 6.2 62 148-209 315-394 (415)
229 PRK08223 hypothetical protein; 95.0 0.054 1.2E-06 46.7 5.5 39 147-185 21-60 (287)
230 TIGR00507 aroE shikimate 5-deh 95.0 0.043 9.3E-07 46.7 4.9 38 150-187 114-151 (270)
231 PRK03803 murD UDP-N-acetylmura 94.9 0.036 7.8E-07 50.5 4.7 36 152-187 5-40 (448)
232 PTZ00117 malate dehydrogenase; 94.9 0.068 1.5E-06 46.7 6.3 37 151-187 3-40 (319)
233 PF01262 AlaDh_PNT_C: Alanine 94.9 0.038 8.3E-07 43.6 4.3 40 148-187 15-54 (168)
234 PRK06249 2-dehydropantoate 2-r 94.9 0.034 7.5E-07 48.3 4.3 33 154-186 6-38 (313)
235 TIGR02355 moeB molybdopterin s 94.9 0.0098 2.1E-07 50.0 0.8 39 148-186 19-58 (240)
236 TIGR02279 PaaC-3OHAcCoADH 3-hy 94.9 0.034 7.4E-07 51.7 4.4 35 153-187 5-39 (503)
237 PRK14167 bifunctional 5,10-met 94.9 0.094 2E-06 45.4 6.7 68 148-221 152-225 (297)
238 PRK08268 3-hydroxy-acyl-CoA de 94.9 0.035 7.7E-07 51.6 4.5 34 154-187 8-41 (507)
239 PRK08229 2-dehydropantoate 2-r 94.8 0.033 7.1E-07 48.8 4.0 33 154-186 3-35 (341)
240 TIGR02371 ala_DH_arch alanine 94.8 0.048 1E-06 47.8 5.0 67 153-219 128-212 (325)
241 PRK06522 2-dehydropantoate 2-r 94.8 0.034 7.3E-07 47.7 4.0 32 155-186 2-33 (304)
242 PRK13303 L-aspartate dehydroge 94.8 0.07 1.5E-06 45.4 5.8 55 154-208 2-68 (265)
243 PRK00421 murC UDP-N-acetylmura 94.8 0.043 9.3E-07 50.3 4.7 38 150-187 4-42 (461)
244 PRK08618 ornithine cyclodeamin 94.8 0.047 1E-06 47.9 4.7 57 152-208 126-199 (325)
245 cd05291 HicDH_like L-2-hydroxy 94.7 0.067 1.4E-06 46.4 5.6 35 154-188 1-37 (306)
246 PRK15182 Vi polysaccharide bio 94.7 0.032 7E-07 50.8 3.7 34 154-188 7-40 (425)
247 PRK07411 hypothetical protein; 94.7 0.02 4.3E-07 51.5 2.3 44 142-185 27-71 (390)
248 PRK14185 bifunctional 5,10-met 94.7 0.11 2.3E-06 45.0 6.7 68 148-221 152-225 (293)
249 PRK06392 homoserine dehydrogen 94.7 0.047 1E-06 48.0 4.6 30 155-184 2-39 (326)
250 TIGR02964 xanthine_xdhC xanthi 94.7 0.051 1.1E-06 45.8 4.7 34 154-187 101-134 (246)
251 cd05311 NAD_bind_2_malic_enz N 94.7 0.1 2.2E-06 43.4 6.3 38 148-185 20-60 (226)
252 PRK12548 shikimate 5-dehydroge 94.7 0.046 1E-06 47.1 4.4 37 150-186 123-160 (289)
253 PF00056 Ldh_1_N: lactate/mala 94.6 0.038 8.2E-07 42.5 3.4 56 155-210 2-78 (141)
254 COG0240 GpsA Glycerol-3-phosph 94.6 0.043 9.3E-07 48.0 4.0 55 154-208 2-78 (329)
255 PRK08762 molybdopterin biosynt 94.6 0.027 5.9E-07 50.3 2.9 44 142-185 124-168 (376)
256 PRK06197 short chain dehydroge 94.6 0.051 1.1E-06 46.7 4.5 47 140-186 3-50 (306)
257 cd01485 E1-1_like Ubiquitin ac 94.6 0.022 4.8E-07 46.3 2.1 43 143-185 9-52 (198)
258 PRK15057 UDP-glucose 6-dehydro 94.5 0.045 9.7E-07 49.2 4.1 33 155-188 2-34 (388)
259 PRK03806 murD UDP-N-acetylmura 94.5 0.062 1.3E-06 48.8 5.0 37 151-187 4-40 (438)
260 PRK04148 hypothetical protein; 94.4 0.044 9.5E-07 41.9 3.3 35 152-187 16-50 (134)
261 COG1004 Ugd Predicted UDP-gluc 94.4 0.069 1.5E-06 47.8 4.8 60 151-210 308-385 (414)
262 PRK14184 bifunctional 5,10-met 94.3 0.15 3.1E-06 44.0 6.6 68 148-221 152-225 (286)
263 KOG0022 Alcohol dehydrogenase, 94.3 0.042 9E-07 47.8 3.2 38 151-188 191-229 (375)
264 PF03435 Saccharop_dh: Sacchar 94.3 0.036 7.7E-07 49.5 3.0 53 156-208 1-74 (386)
265 PRK08217 fabG 3-ketoacyl-(acyl 94.3 0.075 1.6E-06 43.7 4.7 36 151-186 3-39 (253)
266 PTZ00082 L-lactate dehydrogena 94.2 0.13 2.8E-06 45.1 6.2 37 151-187 4-41 (321)
267 PRK07523 gluconate 5-dehydroge 94.2 0.078 1.7E-06 44.0 4.7 37 150-186 7-44 (255)
268 cd01483 E1_enzyme_family Super 94.2 0.065 1.4E-06 40.9 3.9 31 155-185 1-32 (143)
269 PRK08291 ectoine utilization p 94.2 0.077 1.7E-06 46.6 4.8 57 152-208 131-204 (330)
270 PRK08644 thiamine biosynthesis 94.1 0.05 1.1E-06 44.8 3.4 43 143-185 18-61 (212)
271 PRK12771 putative glutamate sy 94.1 0.13 2.8E-06 48.4 6.6 46 141-186 125-170 (564)
272 PRK07878 molybdopterin biosynt 94.1 0.029 6.3E-07 50.5 2.1 44 142-185 31-75 (392)
273 PF02558 ApbA: Ketopantoate re 94.1 0.07 1.5E-06 40.9 3.9 31 156-186 1-31 (151)
274 PRK06841 short chain dehydroge 94.1 0.076 1.7E-06 44.0 4.4 38 150-187 12-50 (255)
275 PRK12828 short chain dehydroge 94.0 0.077 1.7E-06 43.2 4.3 39 150-188 4-43 (239)
276 PF02254 TrkA_N: TrkA-N domain 94.0 0.062 1.3E-06 39.2 3.3 32 156-187 1-32 (116)
277 PRK12749 quinate/shikimate deh 94.0 0.066 1.4E-06 46.2 3.9 38 149-186 120-158 (288)
278 PRK14174 bifunctional 5,10-met 94.0 0.17 3.7E-06 43.8 6.4 68 148-221 154-227 (295)
279 PRK14168 bifunctional 5,10-met 94.0 0.17 3.7E-06 43.8 6.4 68 148-221 156-229 (297)
280 COG0027 PurT Formate-dependent 93.9 0.1 2.2E-06 45.4 4.7 38 152-189 11-48 (394)
281 TIGR01381 E1_like_apg7 E1-like 93.8 0.083 1.8E-06 50.2 4.5 59 113-184 308-370 (664)
282 PLN00106 malate dehydrogenase 93.8 0.25 5.4E-06 43.4 7.2 57 152-208 17-93 (323)
283 smart00846 Gp_dh_N Glyceraldeh 93.8 0.11 2.3E-06 40.5 4.4 30 155-184 2-32 (149)
284 TIGR01087 murD UDP-N-acetylmur 93.7 0.073 1.6E-06 48.3 3.9 33 155-187 1-33 (433)
285 PRK08703 short chain dehydroge 93.7 0.11 2.4E-06 42.7 4.7 39 149-187 2-41 (239)
286 PRK05786 fabG 3-ketoacyl-(acyl 93.7 0.11 2.4E-06 42.5 4.6 38 150-187 2-40 (238)
287 TIGR01832 kduD 2-deoxy-D-gluco 93.7 0.11 2.4E-06 42.8 4.7 37 150-186 2-39 (248)
288 PRK06523 short chain dehydroge 93.7 0.11 2.5E-06 43.1 4.7 39 149-187 5-44 (260)
289 PRK06057 short chain dehydroge 93.7 0.12 2.5E-06 43.0 4.8 38 150-187 4-42 (255)
290 PRK04207 glyceraldehyde-3-phos 93.6 0.1 2.2E-06 46.2 4.4 31 154-184 2-33 (341)
291 PRK06407 ornithine cyclodeamin 93.5 0.12 2.6E-06 44.8 4.8 56 153-208 117-189 (301)
292 PRK06823 ornithine cyclodeamin 93.5 0.13 2.8E-06 45.0 5.0 56 153-208 128-199 (315)
293 PRK06949 short chain dehydroge 93.5 0.13 2.8E-06 42.6 4.8 38 149-186 5-43 (258)
294 PRK14852 hypothetical protein; 93.5 0.096 2.1E-06 52.0 4.5 43 143-185 322-365 (989)
295 PRK06153 hypothetical protein; 93.5 0.08 1.7E-06 47.4 3.6 37 149-185 172-209 (393)
296 CHL00194 ycf39 Ycf39; Provisio 93.5 0.11 2.4E-06 44.9 4.5 54 155-208 2-71 (317)
297 PRK12921 2-dehydropantoate 2-r 93.5 0.088 1.9E-06 45.2 3.8 30 155-184 2-31 (305)
298 PRK06046 alanine dehydrogenase 93.5 0.12 2.5E-06 45.4 4.7 55 153-208 129-200 (326)
299 PRK04523 N-acetylornithine car 93.5 0.8 1.7E-05 40.4 9.9 118 68-208 99-251 (335)
300 COG0169 AroE Shikimate 5-dehyd 93.5 0.077 1.7E-06 45.7 3.4 40 149-188 122-162 (283)
301 PRK06398 aldose dehydrogenase; 93.4 0.13 2.9E-06 42.9 4.8 39 150-188 3-42 (258)
302 cd05292 LDH_2 A subgroup of L- 93.4 0.12 2.6E-06 45.0 4.5 55 155-210 2-76 (308)
303 PRK07231 fabG 3-ketoacyl-(acyl 93.4 0.12 2.7E-06 42.4 4.5 38 150-187 2-40 (251)
304 COG0686 Ald Alanine dehydrogen 93.4 0.078 1.7E-06 46.1 3.2 61 148-208 163-238 (371)
305 PRK09496 trkA potassium transp 93.3 0.11 2.4E-06 47.1 4.5 38 150-187 228-265 (453)
306 PTZ00245 ubiquitin activating 93.3 0.094 2E-06 44.4 3.6 52 132-185 7-59 (287)
307 TIGR01214 rmlD dTDP-4-dehydror 93.3 0.14 3E-06 43.3 4.8 54 155-208 1-57 (287)
308 PRK08862 short chain dehydroge 93.3 0.11 2.4E-06 42.8 4.1 38 150-187 2-40 (227)
309 TIGR03366 HpnZ_proposed putati 93.3 0.41 9E-06 40.5 7.7 35 152-186 120-155 (280)
310 PRK08594 enoyl-(acyl carrier p 93.3 0.16 3.4E-06 42.6 5.0 36 150-185 4-42 (257)
311 PRK01713 ornithine carbamoyltr 93.3 1.1 2.4E-05 39.5 10.5 59 150-208 153-232 (334)
312 PLN02520 bifunctional 3-dehydr 93.3 0.13 2.9E-06 48.1 5.0 38 150-187 376-413 (529)
313 PRK02102 ornithine carbamoyltr 93.3 1.1 2.4E-05 39.5 10.4 59 150-208 152-231 (331)
314 PRK14620 NAD(P)H-dependent gly 93.2 0.12 2.5E-06 45.2 4.2 32 155-186 2-33 (326)
315 PRK07576 short chain dehydroge 93.2 0.15 3.2E-06 42.8 4.7 38 149-186 5-43 (264)
316 PRK08265 short chain dehydroge 93.2 0.16 3.5E-06 42.4 4.9 38 150-187 3-41 (261)
317 PF00185 OTCace: Aspartate/orn 93.2 0.14 3.1E-06 40.1 4.2 57 152-208 1-80 (158)
318 PRK12826 3-ketoacyl-(acyl-carr 93.1 0.15 3.3E-06 41.9 4.6 38 149-186 2-40 (251)
319 PF04016 DUF364: Domain of unk 93.1 0.12 2.5E-06 40.1 3.7 58 150-210 8-71 (147)
320 PRK09186 flagellin modificatio 93.1 0.13 2.7E-06 42.6 4.2 36 151-186 2-38 (256)
321 PRK05717 oxidoreductase; Valid 93.1 0.16 3.5E-06 42.1 4.8 39 148-186 5-44 (255)
322 TIGR01142 purT phosphoribosylg 93.1 0.14 3E-06 45.5 4.6 34 155-188 1-34 (380)
323 PRK05708 2-dehydropantoate 2-r 93.1 0.11 2.4E-06 45.0 3.8 33 154-186 3-35 (305)
324 PRK07533 enoyl-(acyl carrier p 93.0 0.16 3.6E-06 42.4 4.7 38 149-186 6-46 (258)
325 PRK03815 murD UDP-N-acetylmura 93.0 0.15 3.3E-06 46.0 4.8 31 155-186 2-32 (401)
326 TIGR03316 ygeW probable carbam 93.0 1.8 3.8E-05 38.6 11.3 59 150-208 167-252 (357)
327 PRK08339 short chain dehydroge 93.0 0.16 3.5E-06 42.7 4.7 37 150-186 5-42 (263)
328 PRK00856 pyrB aspartate carbam 92.9 1.3 2.8E-05 38.6 10.2 59 150-208 153-220 (305)
329 PRK07806 short chain dehydroge 92.9 0.19 4E-06 41.5 4.8 37 150-186 3-40 (248)
330 PRK06550 fabG 3-ketoacyl-(acyl 92.9 0.18 4E-06 41.1 4.8 38 150-187 2-40 (235)
331 PRK08264 short chain dehydroge 92.8 0.15 3.3E-06 41.7 4.3 38 150-187 3-42 (238)
332 PRK06079 enoyl-(acyl carrier p 92.8 0.17 3.6E-06 42.2 4.5 36 150-185 4-42 (252)
333 PRK08628 short chain dehydroge 92.8 0.16 3.5E-06 42.2 4.4 39 149-187 3-42 (258)
334 TIGR01763 MalateDH_bact malate 92.8 0.27 5.8E-06 42.8 5.8 33 154-186 2-35 (305)
335 PRK07060 short chain dehydroge 92.8 0.19 4.1E-06 41.2 4.7 37 150-186 6-43 (245)
336 PRK06505 enoyl-(acyl carrier p 92.7 0.17 3.8E-06 42.8 4.6 36 150-185 4-42 (271)
337 PRK15116 sulfur acceptor prote 92.7 0.078 1.7E-06 45.3 2.3 43 143-185 20-63 (268)
338 cd00755 YgdL_like Family of ac 92.7 0.15 3.2E-06 42.7 3.9 37 149-185 7-44 (231)
339 PRK07831 short chain dehydroge 92.7 0.17 3.8E-06 42.1 4.5 38 149-186 13-52 (262)
340 PRK06172 short chain dehydroge 92.7 0.15 3.4E-06 42.1 4.1 38 150-187 4-42 (253)
341 PLN00141 Tic62-NAD(P)-related 92.7 0.16 3.5E-06 42.3 4.2 39 148-186 12-51 (251)
342 TIGR01532 E4PD_g-proteo D-eryt 92.7 0.12 2.6E-06 45.4 3.5 30 155-184 1-34 (325)
343 PRK00779 ornithine carbamoyltr 92.7 1.4 3E-05 38.3 10.1 59 150-208 149-224 (304)
344 PF02423 OCD_Mu_crystall: Orni 92.7 0.12 2.6E-06 45.1 3.5 55 154-208 129-199 (313)
345 PRK14804 ornithine carbamoyltr 92.6 1.4 3.1E-05 38.5 10.1 59 150-208 150-225 (311)
346 PRK06125 short chain dehydroge 92.6 0.2 4.2E-06 41.8 4.7 37 150-186 4-41 (259)
347 PF13380 CoA_binding_2: CoA bi 92.6 0.33 7.1E-06 36.0 5.3 55 154-208 1-62 (116)
348 PLN02695 GDP-D-mannose-3',5'-e 92.6 0.25 5.3E-06 44.0 5.5 35 152-186 20-55 (370)
349 cd08230 glucose_DH Glucose deh 92.6 0.17 3.8E-06 44.3 4.5 35 151-185 171-205 (355)
350 PRK07062 short chain dehydroge 92.5 0.16 3.5E-06 42.4 4.0 39 149-187 4-43 (265)
351 PRK05867 short chain dehydroge 92.5 0.21 4.6E-06 41.4 4.7 37 150-186 6-43 (253)
352 PRK08177 short chain dehydroge 92.5 0.21 4.6E-06 40.6 4.7 35 154-188 2-37 (225)
353 PRK08374 homoserine dehydrogen 92.5 0.18 4E-06 44.4 4.5 31 154-184 3-43 (336)
354 cd05293 LDH_1 A subgroup of L- 92.5 0.34 7.4E-06 42.3 6.1 35 153-187 3-39 (312)
355 COG5322 Predicted dehydrogenas 92.5 0.48 1E-05 40.5 6.7 62 147-208 161-237 (351)
356 KOG1207 Diacetyl reductase/L-x 92.5 0.14 3.1E-06 41.0 3.3 38 149-186 3-41 (245)
357 PRK05562 precorrin-2 dehydroge 92.5 0.34 7.3E-06 40.3 5.7 40 149-188 21-60 (223)
358 PF13738 Pyr_redox_3: Pyridine 92.5 0.29 6.2E-06 39.1 5.3 39 149-187 163-201 (203)
359 PRK06603 enoyl-(acyl carrier p 92.5 0.22 4.8E-06 41.7 4.8 37 149-185 4-43 (260)
360 PRK14573 bifunctional D-alanyl 92.4 0.23 5E-06 48.9 5.5 34 154-187 5-39 (809)
361 PRK07890 short chain dehydroge 92.4 0.19 4E-06 41.7 4.3 38 150-187 2-40 (258)
362 PRK12748 3-ketoacyl-(acyl-carr 92.4 0.19 4.2E-06 41.7 4.4 36 150-185 2-40 (256)
363 PRK08415 enoyl-(acyl carrier p 92.4 0.2 4.3E-06 42.6 4.5 35 151-185 3-40 (274)
364 PRK09072 short chain dehydroge 92.4 0.23 4.9E-06 41.5 4.7 36 151-186 3-39 (263)
365 PRK07774 short chain dehydroge 92.4 0.23 5E-06 40.9 4.7 37 150-186 3-40 (250)
366 PRK07326 short chain dehydroge 92.4 0.2 4.3E-06 40.9 4.3 36 151-186 4-40 (237)
367 cd01336 MDH_cytoplasmic_cytoso 92.4 0.42 9E-06 42.0 6.5 55 154-208 3-85 (325)
368 TIGR03325 BphB_TodD cis-2,3-di 92.4 0.22 4.8E-06 41.5 4.7 36 151-186 3-39 (262)
369 PRK09880 L-idonate 5-dehydroge 92.3 0.17 3.7E-06 44.2 4.1 36 152-187 169-205 (343)
370 PRK12861 malic enzyme; Reviewe 92.3 1 2.2E-05 44.0 9.5 97 99-217 157-273 (764)
371 TIGR00658 orni_carb_tr ornithi 92.3 1.7 3.7E-05 37.8 10.1 59 150-208 145-223 (304)
372 TIGR02622 CDP_4_6_dhtase CDP-g 92.3 0.24 5.1E-06 43.4 4.9 37 151-187 2-39 (349)
373 PRK12429 3-hydroxybutyrate deh 92.3 0.17 3.8E-06 41.7 3.9 37 151-187 2-39 (258)
374 PRK02705 murD UDP-N-acetylmura 92.3 0.19 4.2E-06 45.8 4.5 34 155-188 2-35 (459)
375 PTZ00345 glycerol-3-phosphate 92.2 0.31 6.6E-06 43.5 5.6 55 154-208 12-100 (365)
376 COG1249 Lpd Pyruvate/2-oxoglut 92.2 0.2 4.4E-06 46.0 4.5 36 153-188 173-208 (454)
377 PRK08289 glyceraldehyde-3-phos 92.2 0.21 4.5E-06 45.8 4.5 33 151-183 125-162 (477)
378 PRK12859 3-ketoacyl-(acyl-carr 92.2 0.23 5E-06 41.4 4.5 35 150-184 3-40 (256)
379 PRK06500 short chain dehydroge 92.2 0.25 5.3E-06 40.6 4.7 37 150-186 3-40 (249)
380 PF04321 RmlD_sub_bind: RmlD s 92.2 0.14 3E-06 43.9 3.2 54 155-208 2-58 (286)
381 PLN02353 probable UDP-glucose 92.2 0.34 7.3E-06 44.8 5.9 60 149-208 320-419 (473)
382 PLN02602 lactate dehydrogenase 92.1 0.4 8.7E-06 42.6 6.2 34 154-187 38-73 (350)
383 TIGR03466 HpnA hopanoid-associ 92.1 0.27 5.8E-06 42.1 5.0 55 154-208 1-71 (328)
384 COG1648 CysG Siroheme synthase 92.1 0.29 6.2E-06 40.3 4.9 40 148-187 7-46 (210)
385 PLN02662 cinnamyl-alcohol dehy 92.1 0.22 4.8E-06 42.8 4.5 35 152-186 3-38 (322)
386 PRK03515 ornithine carbamoyltr 92.1 1.8 3.9E-05 38.2 10.2 59 150-208 153-232 (336)
387 PRK08589 short chain dehydroge 92.1 0.25 5.5E-06 41.6 4.7 36 150-185 3-39 (272)
388 PRK04284 ornithine carbamoyltr 92.1 2.1 4.6E-05 37.7 10.6 59 150-208 152-231 (332)
389 TIGR03201 dearomat_had 6-hydro 92.1 0.21 4.6E-06 43.7 4.4 35 152-186 166-200 (349)
390 PRK05866 short chain dehydroge 92.1 0.27 5.8E-06 42.2 4.9 40 147-186 34-74 (293)
391 TIGR02822 adh_fam_2 zinc-bindi 92.0 0.21 4.7E-06 43.5 4.3 36 152-187 165-200 (329)
392 TIGR03376 glycerol3P_DH glycer 92.0 0.23 5.1E-06 43.9 4.6 57 155-211 1-92 (342)
393 PRK05876 short chain dehydroge 92.0 0.27 5.8E-06 41.7 4.8 37 150-186 3-40 (275)
394 PRK12939 short chain dehydroge 92.0 0.22 4.7E-06 40.9 4.1 38 150-187 4-42 (250)
395 PRK08085 gluconate 5-dehydroge 92.0 0.27 5.8E-06 40.7 4.7 37 150-186 6-43 (254)
396 PRK12367 short chain dehydroge 92.0 0.26 5.7E-06 41.2 4.7 39 148-186 9-48 (245)
397 PLN02740 Alcohol dehydrogenase 92.0 0.21 4.6E-06 44.4 4.3 36 151-186 197-233 (381)
398 PRK06171 sorbitol-6-phosphate 92.0 0.3 6.4E-06 40.8 5.0 38 150-187 6-44 (266)
399 PTZ00325 malate dehydrogenase; 91.9 0.53 1.1E-05 41.3 6.6 36 149-184 4-42 (321)
400 PRK15182 Vi polysaccharide bio 91.9 0.96 2.1E-05 41.2 8.5 61 148-208 309-385 (425)
401 PRK08690 enoyl-(acyl carrier p 91.9 0.28 6E-06 41.2 4.8 36 150-185 3-41 (261)
402 PRK07589 ornithine cyclodeamin 91.9 0.23 5E-06 44.0 4.4 57 153-209 129-201 (346)
403 PRK08213 gluconate 5-dehydroge 91.9 0.28 6E-06 40.8 4.7 38 149-186 8-46 (259)
404 TIGR03649 ergot_EASG ergot alk 91.9 0.3 6.6E-06 41.3 5.0 33 155-187 1-34 (285)
405 PRK06196 oxidoreductase; Provi 91.9 0.27 5.8E-06 42.5 4.7 39 149-187 22-61 (315)
406 TIGR03206 benzo_BadH 2-hydroxy 91.9 0.29 6.3E-06 40.2 4.7 36 151-186 1-37 (250)
407 PRK05875 short chain dehydroge 91.9 0.27 5.8E-06 41.3 4.6 37 150-186 4-41 (276)
408 PRK12862 malic enzyme; Reviewe 91.8 1.3 2.7E-05 43.5 9.6 97 99-217 161-277 (763)
409 PRK06138 short chain dehydroge 91.8 0.28 6.1E-06 40.4 4.6 37 150-186 2-39 (252)
410 PLN02427 UDP-apiose/xylose syn 91.8 0.39 8.5E-06 42.7 5.9 40 147-186 8-49 (386)
411 PRK07825 short chain dehydroge 91.8 0.28 6.1E-06 41.1 4.7 37 150-186 2-39 (273)
412 PLN02780 ketoreductase/ oxidor 91.8 0.69 1.5E-05 40.3 7.3 36 151-186 51-87 (320)
413 PRK06114 short chain dehydroge 91.8 0.35 7.5E-06 40.2 5.2 38 149-186 4-42 (254)
414 PRK07984 enoyl-(acyl carrier p 91.8 0.26 5.7E-06 41.5 4.5 35 151-185 4-41 (262)
415 PRK08017 oxidoreductase; Provi 91.8 0.26 5.7E-06 40.7 4.4 34 154-187 3-37 (256)
416 TIGR01202 bchC 2-desacetyl-2-h 91.8 0.23 5.1E-06 42.8 4.2 34 152-185 144-178 (308)
417 PRK06935 2-deoxy-D-gluconate 3 91.8 0.29 6.3E-06 40.7 4.7 37 149-185 11-48 (258)
418 cd01491 Ube1_repeat1 Ubiquitin 91.7 0.12 2.7E-06 44.5 2.4 44 143-186 9-53 (286)
419 PRK11891 aspartate carbamoyltr 91.7 3 6.6E-05 38.0 11.4 59 150-208 238-315 (429)
420 COG2423 Predicted ornithine cy 91.7 0.34 7.4E-06 42.6 5.1 56 153-208 130-202 (330)
421 PRK12562 ornithine carbamoyltr 91.7 1.9 4.2E-05 38.0 9.9 59 150-208 153-232 (334)
422 PRK11579 putative oxidoreducta 91.7 0.34 7.3E-06 42.7 5.2 55 154-208 5-71 (346)
423 PRK07478 short chain dehydroge 91.7 0.25 5.4E-06 40.9 4.2 38 150-187 3-41 (254)
424 PF03447 NAD_binding_3: Homose 91.6 0.15 3.2E-06 37.5 2.5 49 160-208 1-66 (117)
425 PRK07889 enoyl-(acyl carrier p 91.6 0.3 6.4E-06 40.9 4.6 37 150-186 4-43 (256)
426 PLN02586 probable cinnamyl alc 91.6 0.29 6.3E-06 43.2 4.8 35 152-186 183-217 (360)
427 TIGR02818 adh_III_F_hyde S-(hy 91.6 0.26 5.6E-06 43.6 4.4 36 151-186 184-220 (368)
428 PRK08159 enoyl-(acyl carrier p 91.6 0.28 6E-06 41.5 4.5 37 149-185 6-45 (272)
429 PRK15057 UDP-glucose 6-dehydro 91.6 0.36 7.8E-06 43.5 5.3 58 151-208 294-366 (388)
430 cd05188 MDR Medium chain reduc 91.6 0.31 6.8E-06 40.1 4.7 36 151-186 133-168 (271)
431 cd08239 THR_DH_like L-threonin 91.6 0.25 5.5E-06 42.8 4.3 35 152-186 163-198 (339)
432 PF05368 NmrA: NmrA-like famil 91.6 0.14 3.1E-06 42.0 2.6 54 156-209 1-72 (233)
433 PRK12742 oxidoreductase; Provi 91.5 0.36 7.9E-06 39.3 5.0 35 150-184 3-38 (237)
434 PRK07856 short chain dehydroge 91.5 0.28 6E-06 40.6 4.3 37 150-186 3-40 (252)
435 PRK12823 benD 1,6-dihydroxycyc 91.5 0.31 6.7E-06 40.5 4.6 37 150-186 5-42 (260)
436 PRK05653 fabG 3-ketoacyl-(acyl 91.5 0.28 6E-06 40.0 4.2 37 151-187 3-40 (246)
437 PRK05872 short chain dehydroge 91.5 0.36 7.7E-06 41.3 5.1 40 148-187 4-44 (296)
438 PLN02896 cinnamyl-alcohol dehy 91.5 0.31 6.7E-06 42.7 4.8 40 147-186 4-44 (353)
439 PRK08277 D-mannonate oxidoredu 91.5 0.32 6.9E-06 40.9 4.7 38 149-186 6-44 (278)
440 PRK06200 2,3-dihydroxy-2,3-dih 91.4 0.33 7.1E-06 40.5 4.7 36 151-186 4-40 (263)
441 PRK06124 gluconate 5-dehydroge 91.4 0.33 7.2E-06 40.2 4.7 38 149-186 7-45 (256)
442 PRK07067 sorbitol dehydrogenas 91.4 0.33 7.2E-06 40.3 4.6 38 150-187 3-41 (257)
443 cd08301 alcohol_DH_plants Plan 91.4 0.27 5.9E-06 43.3 4.3 35 152-186 187-222 (369)
444 PRK08278 short chain dehydroge 91.4 0.36 7.8E-06 40.7 4.9 38 150-187 3-41 (273)
445 TIGR00036 dapB dihydrodipicoli 91.3 0.66 1.4E-05 39.5 6.4 30 155-184 3-35 (266)
446 PRK02255 putrescine carbamoylt 91.3 2.6 5.6E-05 37.3 10.3 60 149-208 150-229 (338)
447 PRK05086 malate dehydrogenase; 91.3 0.56 1.2E-05 40.9 6.1 34 154-187 1-38 (312)
448 PRK05993 short chain dehydroge 91.3 0.32 6.9E-06 41.1 4.5 36 152-187 3-39 (277)
449 PRK07063 short chain dehydroge 91.3 0.29 6.4E-06 40.7 4.2 37 150-186 4-41 (260)
450 PRK08226 short chain dehydroge 91.3 0.35 7.6E-06 40.2 4.7 37 150-186 3-40 (263)
451 PRK08416 7-alpha-hydroxysteroi 91.3 0.36 7.8E-06 40.3 4.8 37 149-185 4-41 (260)
452 PRK09242 tropinone reductase; 91.3 0.35 7.6E-06 40.1 4.7 37 150-186 6-43 (257)
453 PRK06223 malate dehydrogenase; 91.3 0.33 7.2E-06 41.9 4.7 34 154-187 3-37 (307)
454 PRK07035 short chain dehydroge 91.3 0.36 7.8E-06 39.9 4.7 37 150-186 5-42 (252)
455 PRK13394 3-hydroxybutyrate deh 91.3 0.32 7E-06 40.2 4.5 37 150-186 4-41 (262)
456 PLN02240 UDP-glucose 4-epimera 91.2 0.38 8.2E-06 41.9 5.0 36 150-185 2-38 (352)
457 PRK06997 enoyl-(acyl carrier p 91.2 0.33 7.3E-06 40.7 4.5 35 150-184 3-40 (260)
458 PRK07232 bifunctional malic en 91.2 1.4 3E-05 43.1 9.1 97 99-217 153-269 (752)
459 PRK07577 short chain dehydroge 91.2 0.4 8.6E-06 39.0 4.9 37 152-188 2-39 (234)
460 PRK05565 fabG 3-ketoacyl-(acyl 91.2 0.35 7.6E-06 39.5 4.6 37 150-186 2-40 (247)
461 cd01487 E1_ThiF_like E1_ThiF_l 91.2 0.24 5.3E-06 39.4 3.4 32 155-186 1-33 (174)
462 KOG0399 Glutamate synthase [Am 91.2 0.93 2E-05 46.0 7.8 68 141-208 1772-1877(2142)
463 PRK06198 short chain dehydroge 91.1 0.26 5.6E-06 40.9 3.7 38 149-186 2-41 (260)
464 PRK06139 short chain dehydroge 91.0 0.35 7.6E-06 42.4 4.6 38 149-186 3-41 (330)
465 PRK07370 enoyl-(acyl carrier p 91.0 0.38 8.3E-06 40.2 4.7 35 150-184 3-40 (258)
466 PRK13814 pyrB aspartate carbam 91.0 2.5 5.5E-05 36.9 9.9 59 150-208 154-224 (310)
467 TIGR03736 PRTRC_ThiF PRTRC sys 91.0 0.37 8E-06 40.6 4.5 34 152-185 10-54 (244)
468 PTZ00434 cytosolic glyceraldeh 91.0 0.28 6.1E-06 43.5 3.9 31 154-184 4-39 (361)
469 PRK08303 short chain dehydroge 90.9 0.44 9.5E-06 41.2 5.1 38 149-186 4-42 (305)
470 PRK07814 short chain dehydroge 90.9 0.39 8.4E-06 40.1 4.6 38 150-187 7-45 (263)
471 PRK12481 2-deoxy-D-gluconate 3 90.9 0.39 8.4E-06 39.9 4.6 37 150-186 5-42 (251)
472 PRK12829 short chain dehydroge 90.9 0.33 7.2E-06 40.2 4.2 38 149-186 7-45 (264)
473 PRK06940 short chain dehydroge 90.9 0.42 9E-06 40.5 4.8 33 153-186 2-34 (275)
474 PRK06194 hypothetical protein; 90.9 0.39 8.5E-06 40.5 4.7 37 150-186 3-40 (287)
475 PLN02730 enoyl-[acyl-carrier-p 90.9 0.39 8.4E-06 41.7 4.7 34 148-181 4-40 (303)
476 PF01118 Semialdhyde_dh: Semia 90.9 0.38 8.2E-06 35.7 4.0 32 155-186 1-35 (121)
477 PLN02178 cinnamyl-alcohol dehy 90.8 0.3 6.6E-06 43.5 4.1 35 152-186 178-212 (375)
478 PRK14851 hypothetical protein; 90.8 0.18 4E-06 48.5 2.8 42 143-184 33-75 (679)
479 TIGR03451 mycoS_dep_FDH mycoth 90.8 0.3 6.5E-06 42.9 4.0 35 152-186 176-211 (358)
480 PRK03562 glutathione-regulated 90.8 0.2 4.3E-06 47.9 3.0 35 153-187 400-434 (621)
481 PLN02353 probable UDP-glucose 90.8 0.33 7.1E-06 44.9 4.3 34 154-187 2-37 (473)
482 PRK06182 short chain dehydroge 90.8 0.41 8.9E-06 40.2 4.7 35 152-186 2-37 (273)
483 cd08245 CAD Cinnamyl alcohol d 90.7 0.41 8.8E-06 41.2 4.7 36 151-186 161-196 (330)
484 cd08300 alcohol_DH_class_III c 90.7 0.39 8.4E-06 42.4 4.7 35 152-186 186-221 (368)
485 PRK06720 hypothetical protein; 90.7 0.45 9.7E-06 37.6 4.5 37 150-186 13-50 (169)
486 PRK10637 cysG siroheme synthas 90.7 0.47 1E-05 43.6 5.3 40 149-188 8-47 (457)
487 PRK04663 murD UDP-N-acetylmura 90.7 0.43 9.3E-06 43.5 5.0 36 151-186 4-42 (438)
488 PLN02527 aspartate carbamoyltr 90.6 5.6 0.00012 34.6 11.6 59 150-208 148-225 (306)
489 PLN02253 xanthoxin dehydrogena 90.6 0.48 1E-05 39.9 4.9 39 148-186 13-52 (280)
490 cd08242 MDR_like Medium chain 90.6 0.42 9.2E-06 40.9 4.7 36 151-186 154-189 (319)
491 PRK07424 bifunctional sterol d 90.6 0.4 8.6E-06 43.4 4.6 39 148-186 173-212 (406)
492 PLN02358 glyceraldehyde-3-phos 90.5 0.35 7.5E-06 42.7 4.1 30 154-183 6-36 (338)
493 PRK06914 short chain dehydroge 90.5 0.38 8.3E-06 40.4 4.3 36 152-187 2-38 (280)
494 PLN03209 translocon at the inn 90.5 0.4 8.7E-06 45.2 4.7 38 149-186 76-114 (576)
495 TIGR01758 MDH_euk_cyt malate d 90.5 0.59 1.3E-05 41.0 5.5 54 155-208 1-82 (324)
496 PRK12809 putative oxidoreducta 90.5 0.84 1.8E-05 43.7 7.0 47 141-187 297-344 (639)
497 COG1250 FadB 3-hydroxyacyl-CoA 90.5 0.33 7.2E-06 42.3 3.9 34 153-186 3-36 (307)
498 PRK07403 glyceraldehyde-3-phos 90.4 0.34 7.3E-06 42.8 3.9 31 154-184 2-35 (337)
499 cd08295 double_bond_reductase_ 90.4 0.43 9.4E-06 41.4 4.6 36 151-186 150-186 (338)
500 PLN03154 putative allyl alcoho 90.4 0.44 9.5E-06 41.9 4.6 36 151-186 157-193 (348)
No 1
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=100.00 E-value=7.2e-42 Score=296.42 Aligned_cols=204 Identities=20% Similarity=0.272 Sum_probs=169.0
Q ss_pred ceEEEeCCCCCCchhhHHHHHhcCCCeEEec-CCCCChhhhcCCceEEEEcCCCCCHHHHhcCCCceEEEecCccCCccc
Q 027226 13 TRVLFCGPHFPASHNYTKEYLQNYPSIQVDV-VPISDVPDVIANYHLCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVD 91 (226)
Q Consensus 13 ~~Ilv~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~adv~i~~~~~~~~~~l~~~~~Lk~I~~~~aG~d~id 91 (226)
|||+++.+..-. ....+. ++...++.... .+.+++.+.++++|+++++..+++++.++++|+||||++.|+|+|++|
T Consensus 1 mki~~~~~~~~~-~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~id 78 (311)
T PRK08410 1 MKIVILDAKTLG-DKDLSV-FEEFGDFQIYPTTSPEEVIERIKDANIIITNKVVIDKEVLSQLPNLKLICITATGTNNVD 78 (311)
T ss_pred CeEEEEecCCCC-hhhHHH-HhhCceEEEeCCCCHHHHHHHhCCCCEEEECCCCCCHHHHhhCCCCeEEEEccccccccc
Confidence 467777653211 122222 33333433322 234567788899999988766899999999999999999999999999
Q ss_pred hhHHHhCCcEEEecCCCCCCCchhHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCC--------CCCccCCCEEEEEcCCh
Q 027226 92 INAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVP--------TGETLLGKTVFILGFGN 163 (226)
Q Consensus 92 ~~~~~~~gi~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~--------~~~~l~gktvgIvG~G~ 163 (226)
+++++++||.|+|+||+ ++.+||||+++++|+++|++..+++.++++.|... .+++|+||||||||+|+
T Consensus 79 ~~~~~~~gI~v~n~~g~---~~~~VAE~a~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~~L~gktvGIiG~G~ 155 (311)
T PRK08410 79 IEYAKKKGIAVKNVAGY---STESVAQHTFAMLLSLLGRINYYDRYVKSGEYSESPIFTHISRPLGEIKGKKWGIIGLGT 155 (311)
T ss_pred HHHHHhCCCEEEcCCCC---CChHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCcCCCccccCccccccCCCEEEEECCCH
Confidence 99999999999999999 89999999999999999999999999999999743 14689999999999999
Q ss_pred HHHHHHHHHccCCCEEEEEcCCCCCC---CcccChhhhcccCcEEEEe-----ccCCccccccccc
Q 027226 164 IGVELAKRLRPFGVKIIATKRSWASH---SQVSCQSSGWHCKQVISIF-----NEKGFSSGEYCSR 221 (226)
Q Consensus 164 IG~~vA~~l~afG~~V~~~~r~~~~~---~~~~~l~ell~~sD~v~l~-----~~~d~i~~~~~~~ 221 (226)
||+++|+++++|||+|++|||+.+.. ....+|++++++||+|++| +|.++|+.+.|++
T Consensus 156 IG~~vA~~~~~fgm~V~~~d~~~~~~~~~~~~~~l~ell~~sDvv~lh~Plt~~T~~li~~~~~~~ 221 (311)
T PRK08410 156 IGKRVAKIAQAFGAKVVYYSTSGKNKNEEYERVSLEELLKTSDIISIHAPLNEKTKNLIAYKELKL 221 (311)
T ss_pred HHHHHHHHHhhcCCEEEEECCCccccccCceeecHHHHhhcCCEEEEeCCCCchhhcccCHHHHHh
Confidence 99999999999999999999975432 4567899999999999999 7888999888764
No 2
>PLN02928 oxidoreductase family protein
Probab=100.00 E-value=1.6e-41 Score=298.13 Aligned_cols=220 Identities=61% Similarity=0.986 Sum_probs=187.6
Q ss_pred CcCCCCCCCCCceEEEeCCCCCCchhhHHHHHhcCCCeEEecCCCCChhhhcCCceEEEEcCCCCCHHHHhcCCCceEEE
Q 027226 2 EGMARSSDKNITRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISDVPDVIANYHLCVVKTMRLDSNCISRANQMKLIM 81 (226)
Q Consensus 2 ~~~~~~~~~~~~~Ilv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~adv~i~~~~~~~~~~l~~~~~Lk~I~ 81 (226)
++..+++++.+++|+++.+.++....+.+++++.++...+...+.+++.+.++++|+++++..++++++++.+|+||||+
T Consensus 8 ~~~~~~~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~d~~i~~~~~~~~~~l~~~~~Lk~I~ 87 (347)
T PLN02928 8 DKRVHHSDMRPTRVLFCGPEFPASYSYTREYLQKYPFIQVDAVAREDVPDVIANYDICVPKMMRLDADIIARASQMKLIM 87 (347)
T ss_pred hhhccCCCCCCCEEEEECCCchhHHHHHHHHhhcCCeeEecCCCHHHHHHHhcCCcEEEECCCCCCHHHHhcCCCceEEE
Confidence 34556778888899999877665445666666667655555555567778889999988876689999999999999999
Q ss_pred ecCccCCccchhHHHhCCcEEEecCCCCCCCchhHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCCCCCccCCCEEEEEcC
Q 027226 82 QFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGF 161 (226)
Q Consensus 82 ~~~aG~d~id~~~~~~~gi~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~gktvgIvG~ 161 (226)
+.++|+|++|++++.++||.|+|+|++.++++.+||||+++++|+++|++..+.+.++++.|....+.+|.||||||||+
T Consensus 88 ~~~~G~d~id~~~~~~~gi~v~n~~~~~~~~~~~vAE~av~l~L~~~R~~~~~~~~~~~~~w~~~~~~~l~gktvGIiG~ 167 (347)
T PLN02928 88 QFGVGLEGVDVDAATKHGIKVARIPSEGTGNAASCAEMAIYLMLGLLRKQNEMQISLKARRLGEPIGDTLFGKTVFILGY 167 (347)
T ss_pred ECCcccCcCcHHHHHhCCCEEEECCCCCCcChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCcccccccCCCCCEEEEECC
Confidence 99999999999999999999999998754588999999999999999999999999999999766678999999999999
Q ss_pred ChHHHHHHHHHccCCCEEEEEcCCCCCC-------------------CcccChhhhcccCcEEEEe-----ccCCccccc
Q 027226 162 GNIGVELAKRLRPFGVKIIATKRSWASH-------------------SQVSCQSSGWHCKQVISIF-----NEKGFSSGE 217 (226)
Q Consensus 162 G~IG~~vA~~l~afG~~V~~~~r~~~~~-------------------~~~~~l~ell~~sD~v~l~-----~~~d~i~~~ 217 (226)
|+||+++|++|++|||+|++|+|+.+.. ....+|++++++||+|++| +|.++|+.+
T Consensus 168 G~IG~~vA~~l~afG~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ell~~aDiVvl~lPlt~~T~~li~~~ 247 (347)
T PLN02928 168 GAIGIELAKRLRPFGVKLLATRRSWTSEPEDGLLIPNGDVDDLVDEKGGHEDIYEFAGEADIVVLCCTLTKETAGIVNDE 247 (347)
T ss_pred CHHHHHHHHHHhhCCCEEEEECCCCChhhhhhhccccccccccccccCcccCHHHHHhhCCEEEECCCCChHhhcccCHH
Confidence 9999999999999999999999974321 1356899999999999999 677888877
Q ss_pred cccc
Q 027226 218 YCSR 221 (226)
Q Consensus 218 ~~~~ 221 (226)
.+.+
T Consensus 248 ~l~~ 251 (347)
T PLN02928 248 FLSS 251 (347)
T ss_pred HHhc
Confidence 7653
No 3
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=100.00 E-value=7.9e-42 Score=296.50 Aligned_cols=204 Identities=27% Similarity=0.416 Sum_probs=173.0
Q ss_pred CCceEEEeCCCCCCchhhHHHHHhcCCCeEEe---cCCCCChhhhcCCceEEEEcCCCCCHHHHhcCCCceEEEecCccC
Q 027226 11 NITRVLFCGPHFPASHNYTKEYLQNYPSIQVD---VVPISDVPDVIANYHLCVVKTMRLDSNCISRANQMKLIMQFGVGL 87 (226)
Q Consensus 11 ~~~~Ilv~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~adv~i~~~~~~~~~~l~~~~~Lk~I~~~~aG~ 87 (226)
.+++++...+..++ ..+.+... ....+. ..+++++.+.++++|++++..++++++.++.+|+||||++.++|+
T Consensus 2 ~~~~vl~~~~~~~~---~~~~l~~~-~~~~~~~~~~~~~~~l~~~~~~~d~~~~~~~~v~~~~l~~~~~Lk~I~~~g~Gv 77 (324)
T COG0111 2 MMIKVLVTDPLAPD---ALEELLAA-YDVEVPDGPDLDEEELLEALADADALIVSVTPVTEEVLAAAPNLKAIGRAGAGV 77 (324)
T ss_pred CcceeeccCccCHH---HHHHHHhc-cccccccccccchHHHHhhcccCcEEEEecCCCCHHHHhhCCCceEEEEccccc
Confidence 35677777766542 33444433 233332 223445678899999888766789999999999999999999999
Q ss_pred CccchhHHHhCCcEEEecCCCCCCCchhHHHHHHHHHHHHhhcHHHHHHHHHhCCCCC--CCCCccCCCEEEEEcCChHH
Q 027226 88 EGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGV--PTGETLLGKTVFILGFGNIG 165 (226)
Q Consensus 88 d~id~~~~~~~gi~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~--~~~~~l~gktvgIvG~G~IG 165 (226)
|++|.+++.++||.|+|+|+. |+.+||||+++++|+++|+++.+++.++++.|.. ..+.+|+||||||||+|+||
T Consensus 78 d~id~~~~~~~gi~V~nap~~---na~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~g~el~gkTvGIiG~G~IG 154 (324)
T COG0111 78 DNIDLEAATKRGILVVNAPGG---NAISVAELVLALLLALARRIPDADASQRRGEWDRKAFRGTELAGKTVGIIGLGRIG 154 (324)
T ss_pred cccCHHHHhhcCCEEEeCCCc---chHHHHHHHHHHHHHHhcCchhhHHHHHcCCccccccccccccCCEEEEECCCHHH
Confidence 999999999999999999998 9999999999999999999999999999999986 45679999999999999999
Q ss_pred HHHHHHHccCCCEEEEEcCCCCCC-------CcccChhhhcccCcEEEEe-----ccCCccccccccc
Q 027226 166 VELAKRLRPFGVKIIATKRSWASH-------SQVSCQSSGWHCKQVISIF-----NEKGFSSGEYCSR 221 (226)
Q Consensus 166 ~~vA~~l~afG~~V~~~~r~~~~~-------~~~~~l~ell~~sD~v~l~-----~~~d~i~~~~~~~ 221 (226)
+++|+++++|||+|++|||+.+.. ....+||++|++||++++| +|.++|+.+.|.+
T Consensus 155 ~~va~~l~afgm~v~~~d~~~~~~~~~~~~~~~~~~Ld~lL~~sDiv~lh~PlT~eT~g~i~~~~~a~ 222 (324)
T COG0111 155 RAVAKRLKAFGMKVIGYDPYSPRERAGVDGVVGVDSLDELLAEADILTLHLPLTPETRGLINAEELAK 222 (324)
T ss_pred HHHHHHHHhCCCeEEEECCCCchhhhccccceecccHHHHHhhCCEEEEcCCCCcchhcccCHHHHhh
Confidence 999999999999999999965543 3467899999999999999 8889999888764
No 4
>PRK06487 glycerate dehydrogenase; Provisional
Probab=100.00 E-value=3.1e-41 Score=293.14 Aligned_cols=206 Identities=19% Similarity=0.258 Sum_probs=171.4
Q ss_pred ceEEEeCCCCCC-chhhHHHHHhcCCCeEEecC-CCCChhhhcCCceEEEEcCCCCCHHHHhcCCCceEEEecCccCCcc
Q 027226 13 TRVLFCGPHFPA-SHNYTKEYLQNYPSIQVDVV-PISDVPDVIANYHLCVVKTMRLDSNCISRANQMKLIMQFGVGLEGV 90 (226)
Q Consensus 13 ~~Ilv~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~adv~i~~~~~~~~~~l~~~~~Lk~I~~~~aG~d~i 90 (226)
|||+++...... .....+.+.+.++++.+... +.+++.+.++++|+++.+..++++++++++|+||||++.++|+|++
T Consensus 1 m~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~i 80 (317)
T PRK06487 1 MRAVFLDHDSLDLGDLDLSPLEQAFDELQLHDATTPEQVAERLRGAQVAISNKVALDAAALAAAPQLKLILVAATGTNNV 80 (317)
T ss_pred CeEEEEccccCCccccchhHHHhhCCeEEEecCCCHHHHHHHhCCCeEEEEeCCCCCHHHHhhCCCCeEEEEcCcccccc
Confidence 467777543211 11222333334566655332 3456778889999988876679999999999999999999999999
Q ss_pred chhHHHhCCcEEEecCCCCCCCchhHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCC--------CCCccCCCEEEEEcCC
Q 027226 91 DINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVP--------TGETLLGKTVFILGFG 162 (226)
Q Consensus 91 d~~~~~~~gi~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~--------~~~~l~gktvgIvG~G 162 (226)
|.+++.++||+|+|++|+ ++++||||+++++|+++|++..+++.++++.|... .+.+|.||||||+|+|
T Consensus 81 d~~~~~~~gI~v~n~~g~---~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~~~l~gktvgIiG~G 157 (317)
T PRK06487 81 DLAAARERGITVCNCQGY---GTPSVAQHTLALLLALATRLPDYQQAVAAGRWQQSSQFCLLDFPIVELEGKTLGLLGHG 157 (317)
T ss_pred CHHHHHHCCCEEEeCCCC---CcchHHHHHHHHHHHHHcCHHHHHHHHHcCCCccCcccccccCcccccCCCEEEEECCC
Confidence 999999999999999998 88999999999999999999999999999999643 2468999999999999
Q ss_pred hHHHHHHHHHccCCCEEEEEcCCCCCC-CcccChhhhcccCcEEEEe-----ccCCccccccccc
Q 027226 163 NIGVELAKRLRPFGVKIIATKRSWASH-SQVSCQSSGWHCKQVISIF-----NEKGFSSGEYCSR 221 (226)
Q Consensus 163 ~IG~~vA~~l~afG~~V~~~~r~~~~~-~~~~~l~ell~~sD~v~l~-----~~~d~i~~~~~~~ 221 (226)
+||+++|+++++|||+|++|+|+.+.. .+..+|++++++||+|++| +|..+++.+.|++
T Consensus 158 ~IG~~vA~~l~~fgm~V~~~~~~~~~~~~~~~~l~ell~~sDiv~l~lPlt~~T~~li~~~~~~~ 222 (317)
T PRK06487 158 ELGGAVARLAEAFGMRVLIGQLPGRPARPDRLPLDELLPQVDALTLHCPLTEHTRHLIGARELAL 222 (317)
T ss_pred HHHHHHHHHHhhCCCEEEEECCCCCcccccccCHHHHHHhCCEEEECCCCChHHhcCcCHHHHhc
Confidence 999999999999999999999975433 4567899999999999999 7888999888764
No 5
>PRK06932 glycerate dehydrogenase; Provisional
Probab=100.00 E-value=4.4e-41 Score=291.76 Aligned_cols=174 Identities=14% Similarity=0.217 Sum_probs=156.6
Q ss_pred CCCChhhhcCCceEEEEcCCCCCHHHHhcCCCceEEEecCccCCccchhHHHhCCcEEEecCCCCCCCchhHHHHHHHHH
Q 027226 45 PISDVPDVIANYHLCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLM 124 (226)
Q Consensus 45 ~~~~~~~~~~~adv~i~~~~~~~~~~l~~~~~Lk~I~~~~aG~d~id~~~~~~~gi~v~n~~~~~~~~~~~vAE~~l~~~ 124 (226)
+++++.+.++++|+++++..++++++++++|+||||++.++|+|++|.+++.++||.|+|+||+ ++.+||||+++++
T Consensus 34 ~~~~~~~~~~~~d~ii~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~g~---~~~~vAE~~i~l~ 110 (314)
T PRK06932 34 SAEQTIERAKDADIVITSKVLFTRETLAQLPKLKLIAITATGTNNVDLVAAKELGIAVKNVTGY---SSTTVPEHVLGMI 110 (314)
T ss_pred ChHHHHHHhCCCcEEEEeCCCCCHHHHhhCcCCeEEEEecccccccCHHHHHhCCCEEEeCCCC---ChhHHHHHHHHHH
Confidence 3466778899999988766679999999999999999999999999999999999999999999 8899999999999
Q ss_pred HHHhhcHHHHHHHHHhCCCCCC--------CCCccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC--CcccC
Q 027226 125 LGLLRKQNEMRMAIEQKKLGVP--------TGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH--SQVSC 194 (226)
Q Consensus 125 L~~~R~~~~~~~~~~~~~w~~~--------~~~~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~--~~~~~ 194 (226)
|++.|++..+++.++++.|... .+.+|+||||||||+|+||+++|+++++|||+|++|+++.... .+..+
T Consensus 111 l~~~R~~~~~~~~~~~~~W~~~~~~~~~~~~~~~l~gktvgIiG~G~IG~~va~~l~~fg~~V~~~~~~~~~~~~~~~~~ 190 (314)
T PRK06932 111 FALKHSLMGWYRDQLSDRWATCKQFCYFDYPITDVRGSTLGVFGKGCLGTEVGRLAQALGMKVLYAEHKGASVCREGYTP 190 (314)
T ss_pred HHHHhChHHHHHHHHcCCCCcCccccccCCcccccCCCEEEEECCCHHHHHHHHHHhcCCCEEEEECCCcccccccccCC
Confidence 9999999999999999999642 2468999999999999999999999999999999999865332 24678
Q ss_pred hhhhcccCcEEEEe-----ccCCccccccccc
Q 027226 195 QSSGWHCKQVISIF-----NEKGFSSGEYCSR 221 (226)
Q Consensus 195 l~ell~~sD~v~l~-----~~~d~i~~~~~~~ 221 (226)
|++++++||+|++| +|.++++.+.|++
T Consensus 191 l~ell~~sDiv~l~~Plt~~T~~li~~~~l~~ 222 (314)
T PRK06932 191 FEEVLKQADIVTLHCPLTETTQNLINAETLAL 222 (314)
T ss_pred HHHHHHhCCEEEEcCCCChHHhcccCHHHHHh
Confidence 99999999999999 7788998888764
No 6
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=100.00 E-value=7.1e-41 Score=291.24 Aligned_cols=203 Identities=15% Similarity=0.217 Sum_probs=169.2
Q ss_pred CceEEEeCCCCCCchhhHHHHHhcCCCeEEec-C---CCCChhhhcCCceEEEEcCCCCCHHHHhcCCCceEEEecCccC
Q 027226 12 ITRVLFCGPHFPASHNYTKEYLQNYPSIQVDV-V---PISDVPDVIANYHLCVVKTMRLDSNCISRANQMKLIMQFGVGL 87 (226)
Q Consensus 12 ~~~Ilv~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~adv~i~~~~~~~~~~l~~~~~Lk~I~~~~aG~ 87 (226)
+|+|+++.+..+ +..+.+ +...++.+.. . +.+++.+.++++|+++++..++++++++++|+||||++.|+|+
T Consensus 2 ~~~vl~~~~~~~---~~~~~l-~~~~~v~~~~~~~~~~~~~~~~~~~~ad~li~~~~~~~~~~l~~~p~Lk~I~~~g~G~ 77 (323)
T PRK15409 2 KPSVILYKALPD---DLLQRL-EEHFTVTQVANLSPETVEQHAAAFAEAEGLLGSGEKVDAALLEKMPKLRAASTISVGY 77 (323)
T ss_pred CceEEEeCCCCH---HHHHHH-HhcCcEEEcCCCCCCCHHHHHHHhcCCeEEEEcCCCCCHHHHhhCCCCeEEEECceec
Confidence 378999987642 223333 3323443221 1 1234567789999998866689999999999999999999999
Q ss_pred CccchhHHHhCCcEEEecCCCCCCCchhHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCC-----CCCccCCCEEEEEcCC
Q 027226 88 EGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVP-----TGETLLGKTVFILGFG 162 (226)
Q Consensus 88 d~id~~~~~~~gi~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~-----~~~~l~gktvgIvG~G 162 (226)
|+||.+++.++||+|+|+||+ ++++||||+++++|++.|++..+++.+++|.|... .+.+|+||||||||+|
T Consensus 78 d~id~~~~~~~gI~V~n~~~~---~~~~VAE~~~~l~L~~~R~i~~~~~~~~~g~w~~~~~~~~~g~~L~gktvGIiG~G 154 (323)
T PRK15409 78 DNFDVDALTARKILLMHTPTV---LTETVADTLMALVLSTARRVVEVAERVKAGEWTASIGPDWFGTDVHHKTLGIVGMG 154 (323)
T ss_pred ccccHHHHHHCCCEEEeCCCC---CchHHHHHHHHHHHHHHcCHHHHHHHHHcCCCcccCccccccCCCCCCEEEEEccc
Confidence 999999999999999999998 89999999999999999999999999999999632 3679999999999999
Q ss_pred hHHHHHHHHHc-cCCCEEEEEcCCCCCC------CcccChhhhcccCcEEEEe-----ccCCccccccccc
Q 027226 163 NIGVELAKRLR-PFGVKIIATKRSWASH------SQVSCQSSGWHCKQVISIF-----NEKGFSSGEYCSR 221 (226)
Q Consensus 163 ~IG~~vA~~l~-afG~~V~~~~r~~~~~------~~~~~l~ell~~sD~v~l~-----~~~d~i~~~~~~~ 221 (226)
+||+++|++++ +|||+|++|+|+.+.. ....+|++++++||+|++| +|.++|+.+.|++
T Consensus 155 ~IG~~va~~l~~~fgm~V~~~~~~~~~~~~~~~~~~~~~l~ell~~sDvv~lh~plt~~T~~li~~~~l~~ 225 (323)
T PRK15409 155 RIGMALAQRAHFGFNMPILYNARRHHKEAEERFNARYCDLDTLLQESDFVCIILPLTDETHHLFGAEQFAK 225 (323)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCCchhhHHhcCcEecCHHHHHHhCCEEEEeCCCChHHhhccCHHHHhc
Confidence 99999999998 9999999999975432 3456899999999999999 7778888887763
No 7
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=100.00 E-value=5.7e-40 Score=284.71 Aligned_cols=170 Identities=25% Similarity=0.402 Sum_probs=154.4
Q ss_pred ChhhhcCCceEEEEc-CCCCCHHHHhcCCCceEEEecCccCCccchhHHHhCCcEEEecCCCCCCCchhHHHHHHHHHHH
Q 027226 48 DVPDVIANYHLCVVK-TMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLG 126 (226)
Q Consensus 48 ~~~~~~~~adv~i~~-~~~~~~~~l~~~~~Lk~I~~~~aG~d~id~~~~~~~gi~v~n~~~~~~~~~~~vAE~~l~~~L~ 126 (226)
++.+.++++|++++. ..++++++++++|+||+|+..|+|+||||+++++++||.|+|+|++ +.++||||+++++|+
T Consensus 37 ~~~~~~~~~~~i~~~~~~~i~~~~l~~~p~LKlIa~~~~G~D~vDl~aa~~~gI~Vtnvp~~---~t~sVAe~~~aLiLa 113 (324)
T COG1052 37 ELAERLKDADAVITFVNDRIDAEVLEKLPGLKLIATRSAGYDNVDLEAAKERGITVTNVPGY---STEAVAEHAVALILA 113 (324)
T ss_pred HHHHHhcCCcEEEEcCCCCcCHHHHHhCCCcEEEEEeccccCcccHHHHHHCCcEEEeCCCC---CchHHHHHHHHHHHH
Confidence 346778999998886 6789999999999999999999999999999999999999999999 679999999999999
Q ss_pred HhhcHHHHHHHHHhCCCCC------CCCCccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC------CcccC
Q 027226 127 LLRKQNEMRMAIEQKKLGV------PTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH------SQVSC 194 (226)
Q Consensus 127 ~~R~~~~~~~~~~~~~w~~------~~~~~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~------~~~~~ 194 (226)
+.|++...++.+++|.|.. ..+.+++|||+||+|+|+||+++|+++++|||+|+||+|++++. ..+.+
T Consensus 114 ~~R~~~~~~~~~r~g~w~~~~~~~~~~~~~l~gktvGIiG~GrIG~avA~r~~~Fgm~v~y~~~~~~~~~~~~~~~~y~~ 193 (324)
T COG1052 114 LARRIHEGDRRVREGNWSLSGGPDPLLGFDLRGKTLGIIGLGRIGQAVARRLKGFGMKVLYYDRSPNPEAEKELGARYVD 193 (324)
T ss_pred HhhchHHHHHHHhcCcccccCCcccccccCCCCCEEEEECCCHHHHHHHHHHhcCCCEEEEECCCCChHHHhhcCceecc
Confidence 9999999999999999865 34679999999999999999999999999999999999998522 45667
Q ss_pred hhhhcccCcEEEEe-----ccCCcccccccc
Q 027226 195 QSSGWHCKQVISIF-----NEKGFSSGEYCS 220 (226)
Q Consensus 195 l~ell~~sD~v~l~-----~~~d~i~~~~~~ 220 (226)
|+|++++||++++| +|...|+.+.++
T Consensus 194 l~ell~~sDii~l~~Plt~~T~hLin~~~l~ 224 (324)
T COG1052 194 LDELLAESDIISLHCPLTPETRHLINAEELA 224 (324)
T ss_pred HHHHHHhCCEEEEeCCCChHHhhhcCHHHHH
Confidence 99999999999999 777777777654
No 8
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=100.00 E-value=1.8e-39 Score=290.61 Aligned_cols=212 Identities=21% Similarity=0.232 Sum_probs=173.6
Q ss_pred CCCCCCCCCceEEEeCCCCCCchhhHHHHHhcCC-CeEEec--CCCCChhhhcCCceEEEEc-CCCCCHHHHhcCCCceE
Q 027226 4 MARSSDKNITRVLFCGPHFPASHNYTKEYLQNYP-SIQVDV--VPISDVPDVIANYHLCVVK-TMRLDSNCISRANQMKL 79 (226)
Q Consensus 4 ~~~~~~~~~~~Ilv~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~adv~i~~-~~~~~~~~l~~~~~Lk~ 79 (226)
++.|.++.||+|++..+..+. ..+.+.+... ++.+.. .+++++.+.++++|++++. ..++++++++++|+|||
T Consensus 2 ~~~~~~~~~~~ili~~~~~~~---~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~l~~~~~Lk~ 78 (409)
T PRK11790 2 AKVSLPKDKIKFLLLEGVHQS---AVEVLRAAGYTNIEYHKGALDEEELIEAIKDAHFIGIRSRTQLTEEVLAAAEKLVA 78 (409)
T ss_pred CCCCCCCCCeEEEEECCCCHH---HHHHHHhcCCceEEECCCCCCHHHHHHHcCCCCEEEEeCCCCCCHHHHhhCCCCeE
Confidence 466777888999998765322 2233322222 332211 2334667788999988664 35799999999999999
Q ss_pred EEecCccCCccchhHHHhCCcEEEecCCCCCCCchhHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCC--CCCccCCCEEE
Q 027226 80 IMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVP--TGETLLGKTVF 157 (226)
Q Consensus 80 I~~~~aG~d~id~~~~~~~gi~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~--~~~~l~gktvg 157 (226)
|++.|+|+|++|.+++.++||.|+|+||+ ++.+||||+++++|++.|++..+.+.+++|.|... .+.+|.|||||
T Consensus 79 I~~~~~G~d~id~~~~~~~gI~V~n~pg~---~~~aVAE~~i~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~L~gktvG 155 (409)
T PRK11790 79 IGCFCIGTNQVDLDAAAKRGIPVFNAPFS---NTRSVAELVIGEIILLLRGIPEKNAKAHRGGWNKSAAGSFEVRGKTLG 155 (409)
T ss_pred EEECceecccccHHHHHhCCCEEEeCCCC---ChHHHHHHHHHHHHHHHcChHHHHHHHHcCcccccccCcccCCCCEEE
Confidence 99999999999999999999999999998 89999999999999999999999999999999753 46899999999
Q ss_pred EEcCChHHHHHHHHHccCCCEEEEEcCCCCCC---C-cccChhhhcccCcEEEEe-----ccCCccccccccc
Q 027226 158 ILGFGNIGVELAKRLRPFGVKIIATKRSWASH---S-QVSCQSSGWHCKQVISIF-----NEKGFSSGEYCSR 221 (226)
Q Consensus 158 IvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~---~-~~~~l~ell~~sD~v~l~-----~~~d~i~~~~~~~ 221 (226)
|||+|+||+++|+++++|||+|++|||+.... . ...+|++++++||+|++| +|..+++.+.+++
T Consensus 156 IiG~G~IG~~vA~~~~~fGm~V~~~d~~~~~~~~~~~~~~~l~ell~~sDiVslh~Plt~~T~~li~~~~l~~ 228 (409)
T PRK11790 156 IVGYGHIGTQLSVLAESLGMRVYFYDIEDKLPLGNARQVGSLEELLAQSDVVSLHVPETPSTKNMIGAEELAL 228 (409)
T ss_pred EECCCHHHHHHHHHHHHCCCEEEEECCCcccccCCceecCCHHHHHhhCCEEEEcCCCChHHhhccCHHHHhc
Confidence 99999999999999999999999999975432 1 235899999999999999 6777888777653
No 9
>PRK13243 glyoxylate reductase; Reviewed
Probab=100.00 E-value=1.9e-38 Score=277.39 Aligned_cols=202 Identities=21% Similarity=0.325 Sum_probs=166.5
Q ss_pred ceEEEeCCCCCCchhhHHHHHhcCCCeEEec----CCCCChhhhcCCceEEEEcC-CCCCHHHHhcCCCceEEEecCccC
Q 027226 13 TRVLFCGPHFPASHNYTKEYLQNYPSIQVDV----VPISDVPDVIANYHLCVVKT-MRLDSNCISRANQMKLIMQFGVGL 87 (226)
Q Consensus 13 ~~Ilv~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~adv~i~~~-~~~~~~~l~~~~~Lk~I~~~~aG~ 87 (226)
|+|+++.+..+ ...+.+.+.+ ++.+.. .+.+++.+.++++|+++++. .++++++++++|+||||++.++|+
T Consensus 3 ~kil~~~~~~~---~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~p~Lk~I~~~~~G~ 78 (333)
T PRK13243 3 PKVFITREIPE---NGIEMLEEHF-EVEVWEDEREIPREVLLEKVRDVDALVTMLSERIDCEVFEAAPRLRIVANYAVGY 78 (333)
T ss_pred ceEEEECCCCH---HHHHHHhcCc-eEEEecCCCCCCHHHHHHHhCCCcEEEEeCCCCCCHHHHhhCCCCeEEEecCccc
Confidence 68888875432 2233333322 333221 12344667789999988753 479999999999999999999999
Q ss_pred CccchhHHHhCCcEEEecCCCCCCCchhHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCC---------CCCccCCCEEEE
Q 027226 88 EGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVP---------TGETLLGKTVFI 158 (226)
Q Consensus 88 d~id~~~~~~~gi~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~---------~~~~l~gktvgI 158 (226)
|++|.+++.++||.|+|++|+ ++.+||||+++++|++.|+++.+++.+++|.|... .+.+|+||||||
T Consensus 79 d~id~~~~~~~gI~v~n~~g~---~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~g~~L~gktvgI 155 (333)
T PRK13243 79 DNIDVEEATRRGIYVTNTPGV---LTEATADFAWALLLATARRLVEADHFVRSGEWKRRGVAWHPLMFLGYDVYGKTIGI 155 (333)
T ss_pred cccCHHHHHHcCCEEEECCCC---ChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCccccccccccccccCCCCCEEEE
Confidence 999999999999999999998 89999999999999999999999999999999641 357899999999
Q ss_pred EcCChHHHHHHHHHccCCCEEEEEcCCCCCC------CcccChhhhcccCcEEEEe-----ccCCccccccccc
Q 027226 159 LGFGNIGVELAKRLRPFGVKIIATKRSWASH------SQVSCQSSGWHCKQVISIF-----NEKGFSSGEYCSR 221 (226)
Q Consensus 159 vG~G~IG~~vA~~l~afG~~V~~~~r~~~~~------~~~~~l~ell~~sD~v~l~-----~~~d~i~~~~~~~ 221 (226)
||+|+||+.+|++|++|||+|++|+|+++.. ....++++++++||+|++| ++.++++.++++.
T Consensus 156 iG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lP~t~~T~~~i~~~~~~~ 229 (333)
T PRK13243 156 IGFGRIGQAVARRAKGFGMRILYYSRTRKPEAEKELGAEYRPLEELLRESDFVSLHVPLTKETYHMINEERLKL 229 (333)
T ss_pred ECcCHHHHHHHHHHHHCCCEEEEECCCCChhhHHHcCCEecCHHHHHhhCCEEEEeCCCChHHhhccCHHHHhc
Confidence 9999999999999999999999999986542 2356899999999999999 5678888776653
No 10
>PLN02306 hydroxypyruvate reductase
Probab=100.00 E-value=1.8e-36 Score=268.59 Aligned_cols=207 Identities=21% Similarity=0.233 Sum_probs=165.2
Q ss_pred CCCceEEEeCCCCCCchhhHHHHHhcCCCeEEec-----CCCCChhhhc-CCceEEEEc-CCCCCHHHHhcCCC--ceEE
Q 027226 10 KNITRVLFCGPHFPASHNYTKEYLQNYPSIQVDV-----VPISDVPDVI-ANYHLCVVK-TMRLDSNCISRANQ--MKLI 80 (226)
Q Consensus 10 ~~~~~Ilv~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~-~~adv~i~~-~~~~~~~~l~~~~~--Lk~I 80 (226)
..+++|+++.+..+. ...+.+.+...++.+.. .+.+++.+.+ .++|++++. ..++++++++++|+ ||+|
T Consensus 13 ~~~~~v~~~~~~~~~--~~~~~L~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~i~~~~l~~~~~l~lk~I 90 (386)
T PLN02306 13 NGKYRVVSTKPMPGT--RWINLLVDQDCRVEICTEKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFSALSKAGGKAF 90 (386)
T ss_pred CCCceEEEeCCCCcH--HHHHHHHhcCceEEecCCcCCCCCHHHHHHHhhcCCcEEEEcCCCCcCHHHHHhCCcCCceEE
Confidence 345789988865431 12233322212333211 2345566666 569988875 35799999999985 6999
Q ss_pred EecCccCCccchhHHHhCCcEEEecCCCCCCCchhHHHHHHHHHHHHhhcHHHHHHHHHhCCCCC-----CCCCccCCCE
Q 027226 81 MQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGV-----PTGETLLGKT 155 (226)
Q Consensus 81 ~~~~aG~d~id~~~~~~~gi~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~-----~~~~~l~gkt 155 (226)
++.++|+|++|++++.++||+|+|++|+ ++.+||||+++++|++.|++..+++.+++|.|.. ..+.+|.|||
T Consensus 91 ~~~~~G~D~iD~~aa~~~gI~V~n~pg~---~~~~VAE~al~liLal~R~i~~~~~~~~~g~w~~~~~~~~~g~~L~gkt 167 (386)
T PLN02306 91 SNMAVGYNNVDVEAANKYGIAVGNTPGV---LTETTAELAASLSLAAARRIVEADEFMRAGLYEGWLPHLFVGNLLKGQT 167 (386)
T ss_pred EECCcccccccHHHHHHCCCEEEECCCc---CHHHHHHHHHHHHHHHHhChHHHHHHHHcCCCccccccccCCcCCCCCE
Confidence 9999999999999999999999999998 8999999999999999999999999999998742 1367899999
Q ss_pred EEEEcCChHHHHHHHHHc-cCCCEEEEEcCCCCCC-------C---------------cccChhhhcccCcEEEEe----
Q 027226 156 VFILGFGNIGVELAKRLR-PFGVKIIATKRSWASH-------S---------------QVSCQSSGWHCKQVISIF---- 208 (226)
Q Consensus 156 vgIvG~G~IG~~vA~~l~-afG~~V~~~~r~~~~~-------~---------------~~~~l~ell~~sD~v~l~---- 208 (226)
|||||+|+||+++|++++ +|||+|++|||+.+.. . ...+|++++++||+|++|
T Consensus 168 vGIiG~G~IG~~vA~~l~~~fGm~V~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~ell~~sDiV~lh~Plt 247 (386)
T PLN02306 168 VGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQSTRLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLREADVISLHPVLD 247 (386)
T ss_pred EEEECCCHHHHHHHHHHHhcCCCEEEEECCCCchhhhhhhhhhcccccccccccccccccCCHHHHHhhCCEEEEeCCCC
Confidence 999999999999999985 9999999999986421 0 125899999999999999
Q ss_pred -ccCCccccccccc
Q 027226 209 -NEKGFSSGEYCSR 221 (226)
Q Consensus 209 -~~~d~i~~~~~~~ 221 (226)
+|.++|+.+.|++
T Consensus 248 ~~T~~lin~~~l~~ 261 (386)
T PLN02306 248 KTTYHLINKERLAL 261 (386)
T ss_pred hhhhhhcCHHHHHh
Confidence 7788888887764
No 11
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=100.00 E-value=1.5e-36 Score=279.62 Aligned_cols=202 Identities=31% Similarity=0.494 Sum_probs=167.9
Q ss_pred ceEEEeCCCCCCchhhHHHHHhcCCCeEEec---CCCCChhhhcCCceEEEEc-CCCCCHHHHhcCCCceEEEecCccCC
Q 027226 13 TRVLFCGPHFPASHNYTKEYLQNYPSIQVDV---VPISDVPDVIANYHLCVVK-TMRLDSNCISRANQMKLIMQFGVGLE 88 (226)
Q Consensus 13 ~~Ilv~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~adv~i~~-~~~~~~~~l~~~~~Lk~I~~~~aG~d 88 (226)
|+|+++.+..+. ..+ .++..+++++.. .+.+++.+.++++|+++++ ..++++++++++|+||||++.|+|+|
T Consensus 1 m~ili~~~~~~~---~~~-~l~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d 76 (526)
T PRK13581 1 MKVLVSDPISPA---GLE-ILKDAPGVEVDVKTGLDKEELLEIIGDYDALIVRSATKVTAEVLEAAKNLKVIGRAGVGVD 76 (526)
T ss_pred CeEEEeCCCCHH---HHH-HHhccCCeEEEeCCCCCHHHHHHHhcCCCEEEEcCCCCCCHHHHhhCCCCeEEEECCcccc
Confidence 478888765322 223 333334444432 2345677888999998875 35799999999999999999999999
Q ss_pred ccchhHHHhCCcEEEecCCCCCCCchhHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCC--CCCccCCCEEEEEcCChHHH
Q 027226 89 GVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVP--TGETLLGKTVFILGFGNIGV 166 (226)
Q Consensus 89 ~id~~~~~~~gi~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~--~~~~l~gktvgIvG~G~IG~ 166 (226)
++|++++.++||.|+|+|++ ++.+||||+++++|++.|+++.+++.++++.|... .+.+|.||||||+|+|+||+
T Consensus 77 ~id~~~~~~~gI~V~n~p~~---~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~W~~~~~~g~~l~gktvgIiG~G~IG~ 153 (526)
T PRK13581 77 NVDVPAATRRGIIVVNAPTG---NTISAAEHTIALMLALARNIPQAHASLKAGKWERKKFMGVELYGKTLGIIGLGRIGS 153 (526)
T ss_pred cccHHHHHHCCCEEEeCCCC---ChHHHHHHHHHHHHHHHcCHHHHHHHHHcCCCCccCccccccCCCEEEEECCCHHHH
Confidence 99999999999999999998 89999999999999999999999999999999753 46799999999999999999
Q ss_pred HHHHHHccCCCEEEEEcCCCCCC------CcccChhhhcccCcEEEEe-----ccCCccccccccc
Q 027226 167 ELAKRLRPFGVKIIATKRSWASH------SQVSCQSSGWHCKQVISIF-----NEKGFSSGEYCSR 221 (226)
Q Consensus 167 ~vA~~l~afG~~V~~~~r~~~~~------~~~~~l~ell~~sD~v~l~-----~~~d~i~~~~~~~ 221 (226)
++|++|++|||+|++|||+.... ....++++++++||++++| .+.++++.+.+++
T Consensus 154 ~vA~~l~~fG~~V~~~d~~~~~~~~~~~g~~~~~l~ell~~aDiV~l~lP~t~~t~~li~~~~l~~ 219 (526)
T PRK13581 154 EVAKRAKAFGMKVIAYDPYISPERAAQLGVELVSLDELLARADFITLHTPLTPETRGLIGAEELAK 219 (526)
T ss_pred HHHHHHHhCCCEEEEECCCCChhHHHhcCCEEEcHHHHHhhCCEEEEccCCChHhhcCcCHHHHhc
Confidence 99999999999999999975432 2344899999999999999 5677887766653
No 12
>PRK07574 formate dehydrogenase; Provisional
Probab=100.00 E-value=2.7e-36 Score=267.09 Aligned_cols=172 Identities=27% Similarity=0.394 Sum_probs=153.1
Q ss_pred CChhhhcCCceEEEEc---CCCCCHHHHhcCCCceEEEecCccCCccchhHHHhCCcEEEecCCCCCCCchhHHHHHHHH
Q 027226 47 SDVPDVIANYHLCVVK---TMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYL 123 (226)
Q Consensus 47 ~~~~~~~~~adv~i~~---~~~~~~~~l~~~~~Lk~I~~~~aG~d~id~~~~~~~gi~v~n~~~~~~~~~~~vAE~~l~~ 123 (226)
+++.+.++++|++++. ..+++++.++++|+||||++.++|+|++|++++.++||.|+|++|+ |+.+||||++++
T Consensus 82 ~~~~~~l~dadili~~~~~~~~~~~e~l~~~p~LK~I~~~g~G~D~id~~aa~~~gI~V~n~~g~---~a~~VAE~al~l 158 (385)
T PRK07574 82 SDFEKELPDADVVISQPFWPAYLTAERIAKAPNLKLAITAGIGSDHVDLQAASEHGITVAEVTGS---NSISVAEHVVMM 158 (385)
T ss_pred HHHHHHcCCCeEEEEecCCCCCCCHHHHhhCCCCcEEEECCcccccccHHHHHHCCcEEEcCCCC---chHHHHHHHHHH
Confidence 4567889999999874 3468999999999999999999999999999999999999999998 899999999999
Q ss_pred HHHHhhcHHHHHHHHHhCCCCCC----CCCccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC-------C-c
Q 027226 124 MLGLLRKQNEMRMAIEQKKLGVP----TGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH-------S-Q 191 (226)
Q Consensus 124 ~L~~~R~~~~~~~~~~~~~w~~~----~~~~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~-------~-~ 191 (226)
+|++.|++..+++.++++.|... .+.+|.|+||||||+|+||+++|++|++|||+|++|||+.... . .
T Consensus 159 ~L~l~R~~~~~~~~~~~g~W~~~~~~~~~~~L~gktVGIvG~G~IG~~vA~~l~~fG~~V~~~dr~~~~~~~~~~~g~~~ 238 (385)
T PRK07574 159 ILALVRNYEPSHRQAVEGGWNIADCVSRSYDLEGMTVGIVGAGRIGLAVLRRLKPFDVKLHYTDRHRLPEEVEQELGLTY 238 (385)
T ss_pred HHHHHcCHHHHHHHHHhCCCCcccccccceecCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCchhhHhhcCcee
Confidence 99999999999999999999742 3578999999999999999999999999999999999986321 1 1
Q ss_pred ccChhhhcccCcEEEEe-----ccCCccccccccc
Q 027226 192 VSCQSSGWHCKQVISIF-----NEKGFSSGEYCSR 221 (226)
Q Consensus 192 ~~~l~ell~~sD~v~l~-----~~~d~i~~~~~~~ 221 (226)
..+++++++.||+|++| ++.++++.+.+++
T Consensus 239 ~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~ 273 (385)
T PRK07574 239 HVSFDSLVSVCDVVTIHCPLHPETEHLFDADVLSR 273 (385)
T ss_pred cCCHHHHhhcCCEEEEcCCCCHHHHHHhCHHHHhc
Confidence 46899999999999999 5677887777654
No 13
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=100.00 E-value=4e-36 Score=276.80 Aligned_cols=202 Identities=25% Similarity=0.411 Sum_probs=165.7
Q ss_pred eEEEeCCCCCCchhhHHHHHhcCCCeEEec-CCCCChhhhcCCceEEEEcC-CCCCHHHHhcCCCceEEEecCccCCccc
Q 027226 14 RVLFCGPHFPASHNYTKEYLQNYPSIQVDV-VPISDVPDVIANYHLCVVKT-MRLDSNCISRANQMKLIMQFGVGLEGVD 91 (226)
Q Consensus 14 ~Ilv~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~adv~i~~~-~~~~~~~l~~~~~Lk~I~~~~aG~d~id 91 (226)
+|+++.+..+ ...+.+.+...++.+.. .+.+++.+.++++|+++++. .++++++++++|+||||++.|+|+|++|
T Consensus 1 ~vli~~~~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~li~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~id 77 (525)
T TIGR01327 1 KVLIADPISP---DGIDILEDVGVEVDVQTGLSREELLEIIPDYDALIVRSATKVTEEVIAAAPKLKVIGRAGVGVDNID 77 (525)
T ss_pred CEEEeCCCCH---HHHHHHHhcCcEEEeCCCCCHHHHHHHhcCCCEEEEcCCCCcCHHHHhhCCCceEEEECCcccchhc
Confidence 4677765532 22233322222333221 23456778889999988753 5799999999999999999999999999
Q ss_pred hhHHHhCCcEEEecCCCCCCCchhHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCC--CCCccCCCEEEEEcCChHHHHHH
Q 027226 92 INAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVP--TGETLLGKTVFILGFGNIGVELA 169 (226)
Q Consensus 92 ~~~~~~~gi~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~--~~~~l~gktvgIvG~G~IG~~vA 169 (226)
++++.++||.|+|+||+ ++.+||||+++++|++.|+++.+++.++++.|... .+.+|.||||||+|+|+||+++|
T Consensus 78 ~~~~~~~gI~V~n~pg~---~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~~~g~~l~gktvgIiG~G~IG~~vA 154 (525)
T TIGR01327 78 IEAATARGILVVNAPTG---NTISAAEHALAMLLAAARNIPQADASLKEGEWDRKAFMGTELYGKTLGVIGLGRIGSIVA 154 (525)
T ss_pred HHHHHHCCCEEEeCCCc---ChHHHHHHHHHHHHHHhcCHHHHHHHHHcCCccccccCccccCCCEEEEECCCHHHHHHH
Confidence 99999999999999998 89999999999999999999999999999999753 46899999999999999999999
Q ss_pred HHHccCCCEEEEEcCCCCCC------Cc-ccChhhhcccCcEEEEe-----ccCCccccccccc
Q 027226 170 KRLRPFGVKIIATKRSWASH------SQ-VSCQSSGWHCKQVISIF-----NEKGFSSGEYCSR 221 (226)
Q Consensus 170 ~~l~afG~~V~~~~r~~~~~------~~-~~~l~ell~~sD~v~l~-----~~~d~i~~~~~~~ 221 (226)
++|++|||+|++|||+.... .. ..+|+++++.||++++| ++..+++.+++++
T Consensus 155 ~~l~~fG~~V~~~d~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~ 218 (525)
T TIGR01327 155 KRAKAFGMKVLAYDPYISPERAEQLGVELVDDLDELLARADFITVHTPLTPETRGLIGAEELAK 218 (525)
T ss_pred HHHHhCCCEEEEECCCCChhHHHhcCCEEcCCHHHHHhhCCEEEEccCCChhhccCcCHHHHhc
Confidence 99999999999999964332 12 24799999999999999 6678887777663
No 14
>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]
Probab=100.00 E-value=1.5e-36 Score=257.04 Aligned_cols=206 Identities=23% Similarity=0.349 Sum_probs=177.2
Q ss_pred CCCCceEEEeCCCCCCchhhHHHHHhcCCCeEEe-cCCCCChhhhcCCceEEEEc-CCCCCHHHHh-cCCCceEEEecCc
Q 027226 9 DKNITRVLFCGPHFPASHNYTKEYLQNYPSIQVD-VVPISDVPDVIANYHLCVVK-TMRLDSNCIS-RANQMKLIMQFGV 85 (226)
Q Consensus 9 ~~~~~~Ilv~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~adv~i~~-~~~~~~~~l~-~~~~Lk~I~~~~a 85 (226)
+.++.+|+++.+..+.. ++.+.+..-++++. ..+.||+.+.++++|++++. .+++++++|+ ...+||+|.+.++
T Consensus 3 s~~~~~il~~e~~~~~~---~~~l~~~g~~v~~~~~~~~eel~~~i~~~~aviVrs~tkvtadvl~aa~~~lkvVgrag~ 79 (406)
T KOG0068|consen 3 SADMRKILVAESLDQAC---IEILKDNGYQVEFKKNLSLEELIEKIKDCDALIVRSKTKVTADVLEAAAGGLKVVGRAGI 79 (406)
T ss_pred CCCcceEEEecccchHH---HHHHHhcCceEEEeccCCHHHHHHHhccCCEEEEEeCCeecHHHHHhhcCCeEEEEeccc
Confidence 44555799998875432 33333444355543 34567888999999998884 6789999999 4579999999999
Q ss_pred cCCccchhHHHhCCcEEEecCCCCCCCchhHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCC--CCCccCCCEEEEEcCCh
Q 027226 86 GLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVP--TGETLLGKTVFILGFGN 163 (226)
Q Consensus 86 G~d~id~~~~~~~gi~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~--~~~~l~gktvgIvG~G~ 163 (226)
|+|++|++++.++||.|.|+|.+ |+.++||+++++++++.|++.+....++.|+|.+. .+.+++|||+||+|||+
T Consensus 80 G~dNVDL~AAte~gi~Vvn~P~~---Ns~saAEltigli~SLaR~i~~A~~s~k~g~wnr~~~~G~el~GKTLgvlG~Gr 156 (406)
T KOG0068|consen 80 GVDNVDLKAATENGILVVNTPTA---NSRSAAELTIGLILSLARQIGQASASMKEGKWNRVKYLGWELRGKTLGVLGLGR 156 (406)
T ss_pred CccccChhhHHhCCeEEEeCCCC---ChHHHHHHHHHHHHHHhhhcchhheeeecCceeecceeeeEEeccEEEEeeccc
Confidence 99999999999999999999998 88999999999999999999999999999999864 68999999999999999
Q ss_pred HHHHHHHHHccCCCEEEEEcCCCCCC------CcccChhhhcccCcEEEEe-----ccCCcccccccc
Q 027226 164 IGVELAKRLRPFGVKIIATKRSWASH------SQVSCQSSGWHCKQVISIF-----NEKGFSSGEYCS 220 (226)
Q Consensus 164 IG~~vA~~l~afG~~V~~~~r~~~~~------~~~~~l~ell~~sD~v~l~-----~~~d~i~~~~~~ 220 (226)
||+++|+++++|||+|++||+..... ++..+|+|+|+.+|++++| .|+.+++++.|.
T Consensus 157 IGseVA~r~k~~gm~vI~~dpi~~~~~~~a~gvq~vsl~Eil~~ADFitlH~PLtP~T~~lin~~tfA 224 (406)
T KOG0068|consen 157 IGSEVAVRAKAMGMHVIGYDPITPMALAEAFGVQLVSLEEILPKADFITLHVPLTPSTEKLLNDETFA 224 (406)
T ss_pred chHHHHHHHHhcCceEEeecCCCchHHHHhccceeeeHHHHHhhcCEEEEccCCCcchhhccCHHHHH
Confidence 99999999999999999999976554 4788999999999999999 888888887664
No 15
>PLN03139 formate dehydrogenase; Provisional
Probab=100.00 E-value=5e-36 Score=265.25 Aligned_cols=171 Identities=25% Similarity=0.332 Sum_probs=151.3
Q ss_pred CChhhhcCCceEEEEcC---CCCCHHHHhcCCCceEEEecCccCCccchhHHHhCCcEEEecCCCCCCCchhHHHHHHHH
Q 027226 47 SDVPDVIANYHLCVVKT---MRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYL 123 (226)
Q Consensus 47 ~~~~~~~~~adv~i~~~---~~~~~~~l~~~~~Lk~I~~~~aG~d~id~~~~~~~gi~v~n~~~~~~~~~~~vAE~~l~~ 123 (226)
+++.+.++++|++++.. .+++++.++++|+||||++.++|+||||++++.++||.|+|++|+ |+.+||||++++
T Consensus 89 ~~~~~~l~dadili~~~~~~~~~~~e~l~~ap~LK~I~~~g~G~D~iDl~aa~~~gI~V~n~~g~---na~sVAE~al~l 165 (386)
T PLN03139 89 CELEKHIPDLHVLITTPFHPAYVTAERIKKAKNLELLLTAGIGSDHIDLPAAAAAGLTVAEVTGS---NVVSVAEDELMR 165 (386)
T ss_pred HHHHHHhCCCeEEEEcCccCCCCCHHHHhhCCCccEEEECCccccccCHHHHHHCCeEEEECCCc---CcHHHHHHHHHH
Confidence 35677889999998742 358999999999999999999999999999999999999999998 999999999999
Q ss_pred HHHHhhcHHHHHHHHHhCCCCC----CCCCccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC-------C-c
Q 027226 124 MLGLLRKQNEMRMAIEQKKLGV----PTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH-------S-Q 191 (226)
Q Consensus 124 ~L~~~R~~~~~~~~~~~~~w~~----~~~~~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~-------~-~ 191 (226)
+|++.|++..+++.+++|.|.. ..+.+|.||||||||+|+||+++|++|++|||+|++|||+.... . .
T Consensus 166 iL~l~R~~~~~~~~~~~g~W~~~~~~~~~~~L~gktVGIVG~G~IG~~vA~~L~afG~~V~~~d~~~~~~~~~~~~g~~~ 245 (386)
T PLN03139 166 ILILLRNFLPGYHQVVSGEWNVAGIAYRAYDLEGKTVGTVGAGRIGRLLLQRLKPFNCNLLYHDRLKMDPELEKETGAKF 245 (386)
T ss_pred HHHHHcCcHHHHHHHHhCCCccccccCCCcCCCCCEEEEEeecHHHHHHHHHHHHCCCEEEEECCCCcchhhHhhcCcee
Confidence 9999999999999999999974 24679999999999999999999999999999999999985332 1 1
Q ss_pred ccChhhhcccCcEEEEe-----ccCCcccccccc
Q 027226 192 VSCQSSGWHCKQVISIF-----NEKGFSSGEYCS 220 (226)
Q Consensus 192 ~~~l~ell~~sD~v~l~-----~~~d~i~~~~~~ 220 (226)
..++++++++||+|++| .+.++++.+.++
T Consensus 246 ~~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~ 279 (386)
T PLN03139 246 EEDLDAMLPKCDVVVINTPLTEKTRGMFNKERIA 279 (386)
T ss_pred cCCHHHHHhhCCEEEEeCCCCHHHHHHhCHHHHh
Confidence 35899999999999999 566777766655
No 16
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=100.00 E-value=4.6e-36 Score=261.90 Aligned_cols=204 Identities=18% Similarity=0.269 Sum_probs=169.1
Q ss_pred CceEEEeCCCCCCchhhHHHHHhcCCCeEEecCC---CCChhhhcCCceEEEEc-CCCCCHHHHhcCC--CceEEEecCc
Q 027226 12 ITRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVP---ISDVPDVIANYHLCVVK-TMRLDSNCISRAN--QMKLIMQFGV 85 (226)
Q Consensus 12 ~~~Ilv~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~adv~i~~-~~~~~~~~l~~~~--~Lk~I~~~~a 85 (226)
||||+++... +++.++..++++.+ ++++...+ .++..+.++++|+++++ ..++++++++++| +||||++.++
T Consensus 1 ~~~i~~~~~~-~~e~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~~~~~~~~l~~~~~~~Lk~I~~~~~ 78 (330)
T PRK12480 1 MTKIMFFGTR-DYEKEMALNWGKKN-NVEVTTSKELLSSATVDQLKDYDGVTTMQFGKLENDVYPKLESYGIKQIAQRTA 78 (330)
T ss_pred CcEEEEEeCc-HHHHHHHHHHHHhc-CeEEEEcCCCCCHHHHHHhCCCCEEEEecCCCCCHHHHHhhhhcCceEEEeccc
Confidence 5899999866 44466777777666 55554421 23457888999998875 4589999999997 9999999999
Q ss_pred cCCccchhHHHhCCcEEEecCCCCCCCchhHHHHHHHHHHHHhhcHHHHHHHHHhCCC--CC-CCCCccCCCEEEEEcCC
Q 027226 86 GLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKL--GV-PTGETLLGKTVFILGFG 162 (226)
Q Consensus 86 G~d~id~~~~~~~gi~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w--~~-~~~~~l~gktvgIvG~G 162 (226)
|+|++|.+++.++||.|+|+||+ ++++||||+++++|++.|++..+++.++++.| .. ..+++|+|+||||||+|
T Consensus 79 G~d~id~~~~~~~gI~v~n~~~~---~~~~vAE~~~~l~L~~~R~~~~~~~~~~~~~~~w~~~~~~~~l~g~~VgIIG~G 155 (330)
T PRK12480 79 GFDMYDLDLAKKHNIVISNVPSY---SPETIAEYSVSIALQLVRRFPDIERRVQAHDFTWQAEIMSKPVKNMTVAIIGTG 155 (330)
T ss_pred ccchhhHHHHHHCCCEEEeCCCC---ChHHHHHHHHHHHHHHHHhHHHHHHHHHhCCcccccccCccccCCCEEEEECCC
Confidence 99999999999999999999999 88999999999999999999999999999865 33 24679999999999999
Q ss_pred hHHHHHHHHHccCCCEEEEEcCCCCCCC----cccChhhhcccCcEEEEe-----ccCCcccccccc
Q 027226 163 NIGVELAKRLRPFGVKIIATKRSWASHS----QVSCQSSGWHCKQVISIF-----NEKGFSSGEYCS 220 (226)
Q Consensus 163 ~IG~~vA~~l~afG~~V~~~~r~~~~~~----~~~~l~ell~~sD~v~l~-----~~~d~i~~~~~~ 220 (226)
+||+.+|++|++|||+|++|||++.... ...+++++++.||++++| .+..+++.+.++
T Consensus 156 ~IG~~vA~~L~~~G~~V~~~d~~~~~~~~~~~~~~~l~ell~~aDiVil~lP~t~~t~~li~~~~l~ 222 (330)
T PRK12480 156 RIGAATAKIYAGFGATITAYDAYPNKDLDFLTYKDSVKEAIKDADIISLHVPANKESYHLFDKAMFD 222 (330)
T ss_pred HHHHHHHHHHHhCCCEEEEEeCChhHhhhhhhccCCHHHHHhcCCEEEEeCCCcHHHHHHHhHHHHh
Confidence 9999999999999999999999865421 134799999999999999 234556555543
No 17
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=100.00 E-value=1.3e-34 Score=250.95 Aligned_cols=199 Identities=15% Similarity=0.208 Sum_probs=161.8
Q ss_pred ceEEEeCCCCCCchhhHHHHHhcCCCeEEecCCCCChhhhcCCceEEEEcCCCCCHHHHhcCCCceEEEecCccCCccch
Q 027226 13 TRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISDVPDVIANYHLCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDI 92 (226)
Q Consensus 13 ~~Ilv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~adv~i~~~~~~~~~~l~~~~~Lk~I~~~~aG~d~id~ 92 (226)
|.|++..+... ...|.+.+.+.+|++++..++.++ .+++|+++++. .+.+.++ .|+||||++.|+|+|++|.
T Consensus 1 ~~~~~~~~~~~-~~~~~~~l~~~~p~~~~~~~~~~~----~~~a~~~~~~~--~~~~~l~-~~~Lk~I~~~~aG~d~i~~ 72 (312)
T PRK15469 1 MDIIFYHPTFD-TQWWIEALRKALPQARVRAWKSGD----NDPADYALVWH--PPVEMLA-GRDLKAVFALGAGVDSILS 72 (312)
T ss_pred CEEEEeCCccC-HHHHHHHHHHHCCCCeEEecCCCC----CccCeEEEEeC--CChHHhc-cCCceEEEEcccccchhhh
Confidence 46777776633 245777777778988876544433 46889988874 3567775 5899999999999999973
Q ss_pred hH-----HHhCCcEEEecCCCCCCCchhHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCCCCCccCCCEEEEEcCChHHHH
Q 027226 93 NA-----ATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVE 167 (226)
Q Consensus 93 ~~-----~~~~gi~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~gktvgIvG~G~IG~~ 167 (226)
.. +.++||+|+|+++. +++.+||||+++++|++.|++..+.+.++++.|......++.||||||||+|+||++
T Consensus 73 ~~~~~~~~~~~~i~v~~~~~~--~~~~~vAE~~l~~~L~~~r~~~~~~~~~~~~~w~~~~~~~l~g~tvgIvG~G~IG~~ 150 (312)
T PRK15469 73 KLQAHPEMLDPSVPLFRLEDT--GMGEQMQEYAVSQVLHWFRRFDDYQALQNSSHWQPLPEYHREDFTIGILGAGVLGSK 150 (312)
T ss_pred hhccccccCCCCceEEEecCC--cccHHHHHHHHHHHHHHHcChHHHHHHHHhCCcCCCCCCCcCCCEEEEECCCHHHHH
Confidence 22 34589999999764 278999999999999999999999999999999876667899999999999999999
Q ss_pred HHHHHccCCCEEEEEcCCCCCC------CcccChhhhcccCcEEEEe-----ccCCccccccccc
Q 027226 168 LAKRLRPFGVKIIATKRSWASH------SQVSCQSSGWHCKQVISIF-----NEKGFSSGEYCSR 221 (226)
Q Consensus 168 vA~~l~afG~~V~~~~r~~~~~------~~~~~l~ell~~sD~v~l~-----~~~d~i~~~~~~~ 221 (226)
+|++|++|||+|++|+|+.+.. ....+|++++++||++++| .+..+++.+++++
T Consensus 151 vA~~l~afG~~V~~~~~~~~~~~~~~~~~~~~~l~e~l~~aDvvv~~lPlt~~T~~li~~~~l~~ 215 (312)
T PRK15469 151 VAQSLQTWGFPLRCWSRSRKSWPGVQSFAGREELSAFLSQTRVLINLLPNTPETVGIINQQLLEQ 215 (312)
T ss_pred HHHHHHHCCCEEEEEeCCCCCCCCceeecccccHHHHHhcCCEEEECCCCCHHHHHHhHHHHHhc
Confidence 9999999999999999976542 2346799999999999999 5667777666653
No 18
>PRK08605 D-lactate dehydrogenase; Validated
Probab=100.00 E-value=4.5e-34 Score=249.81 Aligned_cols=179 Identities=17% Similarity=0.316 Sum_probs=151.8
Q ss_pred hhhHHHHHhcCCCeEEec---CCCCChhhhcCCceEEEEc-CCCCCHHHHhcCCC--ceEEEecCccCCccchhHHHhCC
Q 027226 26 HNYTKEYLQNYPSIQVDV---VPISDVPDVIANYHLCVVK-TMRLDSNCISRANQ--MKLIMQFGVGLEGVDINAATRCG 99 (226)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~adv~i~~-~~~~~~~~l~~~~~--Lk~I~~~~aG~d~id~~~~~~~g 99 (226)
..+.+.+.+.+ ++++.. ...++..+.++++|++++. ..++++++++++|+ ||||++.|+|+|++|.++++++|
T Consensus 14 ~~~~~~~~~~~-~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~lk~I~~~~~G~d~id~~~~~~~g 92 (332)
T PRK08605 14 APYIKAWAEKH-HVEVDLTKEALTDDNVEEVEGFDGLSLSQQIPLSEAIYKLLNELGIKQIAQRSAGFDTYDLELATKYN 92 (332)
T ss_pred HHHHHHHHHhc-CeEEEEecCCCCHHHHHHhcCCCEEEEecCCCCCHHHHHhhhhcCceEEEEcccccchhhHHHHHHCC
Confidence 55666666654 444322 2334556778999988774 46799999999996 99999999999999999999999
Q ss_pred cEEEecCCCCCCCchhHHHHHHHHHHHHhhcHHHHHHHHHhCCCC--C-CCCCccCCCEEEEEcCChHHHHHHHHH-ccC
Q 027226 100 IKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLG--V-PTGETLLGKTVFILGFGNIGVELAKRL-RPF 175 (226)
Q Consensus 100 i~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~--~-~~~~~l~gktvgIvG~G~IG~~vA~~l-~af 175 (226)
|.|+|+||+ ++.+||||+++++|++.|++..+++.++++.|. . ..+++|+|+||||||+|+||+++|++| ++|
T Consensus 93 i~v~n~~~~---~~~~vAE~~~~~~l~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~g~~VgIIG~G~IG~~vA~~L~~~~ 169 (332)
T PRK08605 93 LIISNVPSY---SPESIAEFTVTQAINLVRHFNQIQTKVREHDFRWEPPILSRSIKDLKVAVIGTGRIGLAVAKIFAKGY 169 (332)
T ss_pred CEEEeCCCC---ChHHHHHHHHHHHHHHhcChHHHHHHHHhCCcccccccccceeCCCEEEEECCCHHHHHHHHHHHhcC
Confidence 999999998 889999999999999999999999999999764 2 246799999999999999999999999 899
Q ss_pred CCEEEEEcCCCCCC----Cc-ccChhhhcccCcEEEEe
Q 027226 176 GVKIIATKRSWASH----SQ-VSCQSSGWHCKQVISIF 208 (226)
Q Consensus 176 G~~V~~~~r~~~~~----~~-~~~l~ell~~sD~v~l~ 208 (226)
||+|++||++.... .. ..+++++++++|++++|
T Consensus 170 g~~V~~~d~~~~~~~~~~~~~~~~l~ell~~aDvIvl~ 207 (332)
T PRK08605 170 GSDVVAYDPFPNAKAATYVDYKDTIEEAVEGADIVTLH 207 (332)
T ss_pred CCEEEEECCCccHhHHhhccccCCHHHHHHhCCEEEEe
Confidence 99999999986542 12 34899999999999999
No 19
>PRK06436 glycerate dehydrogenase; Provisional
Probab=100.00 E-value=8.7e-34 Score=244.60 Aligned_cols=190 Identities=18% Similarity=0.208 Sum_probs=149.5
Q ss_pred ceEEEeCCCCCCchhhHHHHHhcCCCeEEecCCCCChhhhcCCceEEEEcCCCCCHHHHhcCCCceEEEecCccCCccch
Q 027226 13 TRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISDVPDVIANYHLCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDI 92 (226)
Q Consensus 13 ~~Ilv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~adv~i~~~~~~~~~~l~~~~~Lk~I~~~~aG~d~id~ 92 (226)
|++++..+..+. ..+.+.+.++..++...+ ...++|++++... +...++||||++.++|+|++|.
T Consensus 1 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~------~~~~a~~~~~~~~------~~~~~~Lk~I~~~~aG~D~id~ 65 (303)
T PRK06436 1 MNVYVNFPMSKK---LLEICRDILDLDDVHWYP------DYYDAEAILIKGR------YVPGKKTKMIQSLSAGVDHIDV 65 (303)
T ss_pred CeEEEEccCCHH---HHHHHHhhcccceeEecc------ccCCCCEEEecCC------cCCCCCeEEEEECCcccCcccH
Confidence 346666555332 222222344444444322 2457888865321 2346899999999999999999
Q ss_pred hHHHhCCcEEEecCCCCCCCchhHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCCCCCccCCCEEEEEcCChHHHHHHHHH
Q 027226 93 NAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRL 172 (226)
Q Consensus 93 ~~~~~~gi~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~gktvgIvG~G~IG~~vA~~l 172 (226)
+++.++++.++|. |. ++.+||||+++++|+++|+++.+.+.++++.|....+.+|+||||||+|+|+||+++|+++
T Consensus 66 ~~~~~~~i~~~~~-g~---~~~~VAE~~l~l~L~l~R~i~~~~~~~~~g~w~~~~~~~L~gktvgIiG~G~IG~~vA~~l 141 (303)
T PRK06436 66 SGIPENVVLCSNA-GA---YSISVAEHAFALLLAWAKNICENNYNMKNGNFKQSPTKLLYNKSLGILGYGGIGRRVALLA 141 (303)
T ss_pred HHHHhCCeEEEcC-CC---CcHHHHHHHHHHHHHHHcChHHHHHHHHcCCCCCCCCCCCCCCEEEEECcCHHHHHHHHHH
Confidence 9998888877774 65 7899999999999999999999999999999987667899999999999999999999999
Q ss_pred ccCCCEEEEEcCCCCCC-C--cccChhhhcccCcEEEEe-----ccCCccccccccc
Q 027226 173 RPFGVKIIATKRSWASH-S--QVSCQSSGWHCKQVISIF-----NEKGFSSGEYCSR 221 (226)
Q Consensus 173 ~afG~~V~~~~r~~~~~-~--~~~~l~ell~~sD~v~l~-----~~~d~i~~~~~~~ 221 (226)
++|||+|++|+|+..+. . ...++++++++||++++| ++.++++.+++++
T Consensus 142 ~afG~~V~~~~r~~~~~~~~~~~~~l~ell~~aDiv~~~lp~t~~T~~li~~~~l~~ 198 (303)
T PRK06436 142 KAFGMNIYAYTRSYVNDGISSIYMEPEDIMKKSDFVLISLPLTDETRGMINSKMLSL 198 (303)
T ss_pred HHCCCEEEEECCCCcccCcccccCCHHHHHhhCCEEEECCCCCchhhcCcCHHHHhc
Confidence 99999999999976443 1 256899999999999999 6677887776653
No 20
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=100.00 E-value=1.7e-33 Score=248.24 Aligned_cols=183 Identities=19% Similarity=0.285 Sum_probs=149.6
Q ss_pred ceEEEeCCCCCCchhhHHHHHhcCCCeEEecCCCCChhhhcCCceEEEEc-CCCCCHHHHhcCCCceEEEecCccCCccc
Q 027226 13 TRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISDVPDVIANYHLCVVK-TMRLDSNCISRANQMKLIMQFGVGLEGVD 91 (226)
Q Consensus 13 ~~Ilv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~adv~i~~-~~~~~~~~l~~~~~Lk~I~~~~aG~d~id 91 (226)
|||++.... + +..++++.+.++.... ..+...+.++++|+++++ ..++++++++ .|+||||++.++|+||+|
T Consensus 1 mkIl~d~~~-~----~~~~~~~~~~ev~~~~-~~~~~~~~l~daD~liv~s~t~v~~~ll~-~~~Lk~I~~~~~G~D~iD 73 (378)
T PRK15438 1 MKILVDENM-P----YARELFSRLGEVKAVP-GRPIPVAQLADADALMVRSVTKVNESLLA-GKPIKFVGTATAGTDHVD 73 (378)
T ss_pred CEEEEeCCc-c----hHHHHHhhcCcEEEeC-CCCCCHHHhCCCcEEEEcCCCCCCHHHhc-CCCCeEEEECcccccccC
Confidence 688888654 2 2345555554554432 122235668999999885 4578999886 799999999999999999
Q ss_pred hhHHHhCCcEEEecCCCCCCCchhHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCCCCCccCCCEEEEEcCChHHHHHHHH
Q 027226 92 INAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKR 171 (226)
Q Consensus 92 ~~~~~~~gi~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~gktvgIvG~G~IG~~vA~~ 171 (226)
.+++.++||.|+|+||+ |+.+||||+++++|++.|+ .+.+|.||||||||+|+||+++|++
T Consensus 74 ~~~~~~~gI~v~napg~---na~aVAE~~~~~lL~l~r~----------------~g~~L~gktvGIIG~G~IG~~vA~~ 134 (378)
T PRK15438 74 EAWLKQAGIGFSAAPGC---NAIAVVEYVFSSLLMLAER----------------DGFSLHDRTVGIVGVGNVGRRLQAR 134 (378)
T ss_pred HHHHHHCCCEEEECCCc---CchHHHHHHHHHHHHHhcc----------------CCCCcCCCEEEEECcCHHHHHHHHH
Confidence 99999999999999998 9999999999999999985 1458999999999999999999999
Q ss_pred HccCCCEEEEEcCCCCCC---CcccChhhhcccCcEEEEe----c-----cCCccccccccc
Q 027226 172 LRPFGVKIIATKRSWASH---SQVSCQSSGWHCKQVISIF----N-----EKGFSSGEYCSR 221 (226)
Q Consensus 172 l~afG~~V~~~~r~~~~~---~~~~~l~ell~~sD~v~l~----~-----~~d~i~~~~~~~ 221 (226)
|++|||+|++|||..... ....+|++++++||++++| . |..+++.+++++
T Consensus 135 l~a~G~~V~~~dp~~~~~~~~~~~~~L~ell~~sDiI~lh~PLt~~g~~~T~~li~~~~l~~ 196 (378)
T PRK15438 135 LEALGIKTLLCDPPRADRGDEGDFRSLDELVQEADILTFHTPLFKDGPYKTLHLADEKLIRS 196 (378)
T ss_pred HHHCCCEEEEECCcccccccccccCCHHHHHhhCCEEEEeCCCCCCcccccccccCHHHHhc
Confidence 999999999999864422 2456899999999999999 2 667888877763
No 21
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=100.00 E-value=1.5e-32 Score=242.96 Aligned_cols=183 Identities=15% Similarity=0.251 Sum_probs=149.4
Q ss_pred ceEEEeCCCCCCchhhHHHHHhcCCCeEEecCCCCChhhhcCCceEEEEcC-CCCCHHHHhcCCCceEEEecCccCCccc
Q 027226 13 TRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISDVPDVIANYHLCVVKT-MRLDSNCISRANQMKLIMQFGVGLEGVD 91 (226)
Q Consensus 13 ~~Ilv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~adv~i~~~-~~~~~~~l~~~~~Lk~I~~~~aG~d~id 91 (226)
|||++..... +.+++++.+.++.... ..+...+.++++|+++++. .++++++++ .++||||++.++|+||+|
T Consensus 1 mkI~~d~~~p-----~~~~~~~~~~~v~~~~-~~~~~~~~l~daD~liv~~~t~v~~~ll~-~~~Lk~I~~~~~G~D~iD 73 (381)
T PRK00257 1 MKIVADENIP-----LLDAFFAGFGEIRRLP-GRAFDRAAVRDADVLLVRSVTRVDRALLE-GSRVRFVGTCTIGTDHLD 73 (381)
T ss_pred CEEEEecCch-----hHHHHHhhCCcEEEcC-CcccCHHHhCCceEEEEeCCCCCCHHHhc-CCCCeEEEECCccccccC
Confidence 6888887762 2355555555444322 1222356789999988753 579999997 589999999999999999
Q ss_pred hhHHHhCCcEEEecCCCCCCCchhHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCCCCCccCCCEEEEEcCChHHHHHHHH
Q 027226 92 INAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKR 171 (226)
Q Consensus 92 ~~~~~~~gi~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~gktvgIvG~G~IG~~vA~~ 171 (226)
.+++.++||.|+|+||+ |+.+||||+++++|++.|+ .+.++.||||||||+|+||+++|++
T Consensus 74 ~~~~~~~gI~v~napg~---na~aVAE~v~~~lL~l~r~----------------~g~~l~gktvGIIG~G~IG~~va~~ 134 (381)
T PRK00257 74 LDYFAEAGITWSSAPGC---NARGVVDYVLGSLLTLAER----------------EGVDLAERTYGVVGAGHVGGRLVRV 134 (381)
T ss_pred HHHHHHCCCEEEECCCc---ChHHHHHHHHHHHHHHhcc----------------cCCCcCcCEEEEECCCHHHHHHHHH
Confidence 99999999999999998 9999999999999999875 2568999999999999999999999
Q ss_pred HccCCCEEEEEcCCCCCC---CcccChhhhcccCcEEEEe----c-----cCCccccccccc
Q 027226 172 LRPFGVKIIATKRSWASH---SQVSCQSSGWHCKQVISIF----N-----EKGFSSGEYCSR 221 (226)
Q Consensus 172 l~afG~~V~~~~r~~~~~---~~~~~l~ell~~sD~v~l~----~-----~~d~i~~~~~~~ 221 (226)
+++|||+|++||+..... ....+|++++++||++++| + |..+++.+++++
T Consensus 135 l~a~G~~V~~~Dp~~~~~~~~~~~~~l~ell~~aDiV~lh~Plt~~g~~~T~~li~~~~l~~ 196 (381)
T PRK00257 135 LRGLGWKVLVCDPPRQEAEGDGDFVSLERILEECDVISLHTPLTKEGEHPTRHLLDEAFLAS 196 (381)
T ss_pred HHHCCCEEEEECCcccccccCccccCHHHHHhhCCEEEEeCcCCCCccccccccCCHHHHhc
Confidence 999999999999864322 3456899999999999999 2 557777776653
No 22
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=99.97 E-value=2.4e-31 Score=229.10 Aligned_cols=169 Identities=31% Similarity=0.450 Sum_probs=145.5
Q ss_pred hhhcCCceEEEEc--CCCCCHHHHhcC-CCceEEEecCccCCccchhHHHhCCcEEEecCCCCCCCchhHHHHHHHHHHH
Q 027226 50 PDVIANYHLCVVK--TMRLDSNCISRA-NQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLG 126 (226)
Q Consensus 50 ~~~~~~adv~i~~--~~~~~~~~l~~~-~~Lk~I~~~~aG~d~id~~~~~~~gi~v~n~~~~~~~~~~~vAE~~l~~~L~ 126 (226)
.+.+.+..+.+.+ ....+.+.+... |+||+|.++|+|+||+|+++++++||+|+|+|+. +.++|||++++++|.
T Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~p~lK~i~t~~vG~D~vDl~a~~krgI~V~nvp~~---~~~~vAd~~~~lil~ 131 (336)
T KOG0069|consen 55 LKRIADSRIAISVPFTGAFTKELISALSPNLKLIVTMSVGYDHVDLEAARKRGIRVANVPDV---LTDDVADLAVSLLLA 131 (336)
T ss_pred hhhccceeeeeecccchHHhHhhhhhcCCCeeEEEEeecccchhhHHHHHhcCceEeccCCc---chHHHHHHHHHHHHH
Confidence 3445555555443 345667777765 9999999999999999999999999999999999 789999999999999
Q ss_pred HhhcHHHHHHHHHhCCCCC----CCCCccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC-------CcccCh
Q 027226 127 LLRKQNEMRMAIEQKKLGV----PTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH-------SQVSCQ 195 (226)
Q Consensus 127 ~~R~~~~~~~~~~~~~w~~----~~~~~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~-------~~~~~l 195 (226)
+.|++...++.++++.|.. +.+..+.||||||+|+|+||+++|+||++||+.+.|++|+.... ....++
T Consensus 132 ~~R~~~~g~~~~~~g~w~~~~~~~~g~~~~gK~vgilG~G~IG~~ia~rL~~Fg~~i~y~~r~~~~~~~~~~~~~~~~d~ 211 (336)
T KOG0069|consen 132 LLRRFSEGNEMVRNGGWGWAGGWPLGYDLEGKTVGILGLGRIGKAIAKRLKPFGCVILYHSRTQLPPEEAYEYYAEFVDI 211 (336)
T ss_pred HHhhhhhhhhhhhcCCccccCCccccccccCCEEEEecCcHHHHHHHHhhhhccceeeeecccCCchhhHHHhcccccCH
Confidence 9999999999999999932 25689999999999999999999999999999999999976643 235689
Q ss_pred hhhcccCcEEEEe-----ccCCccccccccc
Q 027226 196 SSGWHCKQVISIF-----NEKGFSSGEYCSR 221 (226)
Q Consensus 196 ~ell~~sD~v~l~-----~~~d~i~~~~~~~ 221 (226)
++++++||+++++ .|..+++.++|+.
T Consensus 212 ~~~~~~sD~ivv~~pLt~~T~~liNk~~~~~ 242 (336)
T KOG0069|consen 212 EELLANSDVIVVNCPLTKETRHLINKKFIEK 242 (336)
T ss_pred HHHHhhCCEEEEecCCCHHHHHHhhHHHHHh
Confidence 9999999999999 7788888887753
No 23
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=99.88 E-value=5e-23 Score=165.27 Aligned_cols=101 Identities=31% Similarity=0.483 Sum_probs=88.0
Q ss_pred HHHHHHHhhcHHHHHHHHHhCCC---CCCCCCccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC-------C
Q 027226 121 IYLMLGLLRKQNEMRMAIEQKKL---GVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH-------S 190 (226)
Q Consensus 121 l~~~L~~~R~~~~~~~~~~~~~w---~~~~~~~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~-------~ 190 (226)
++++|++.|+++.+.+.++++.| ....+++++|+||||+|+|+||+++|++|++|||+|++|+|+.+.. .
T Consensus 1 i~l~L~~~R~~~~~~~~~~~~~W~~~~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~~~~ 80 (178)
T PF02826_consen 1 IALMLALLRRLPEYHEAQRNGEWASRERFPGRELRGKTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEEGADEFGV 80 (178)
T ss_dssp HHHHHHHHTTHHHHHHHHHTTBHHHHTTTTBS-STTSEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHHHHHHTTE
T ss_pred ChHHHHHHhCHHHHHHHHHcCCCCCCcCCCccccCCCEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhhhcccccc
Confidence 58999999999999999999999 5667899999999999999999999999999999999999998753 3
Q ss_pred cccChhhhcccCcEEEEe-----ccCCccccccccc
Q 027226 191 QVSCQSSGWHCKQVISIF-----NEKGFSSGEYCSR 221 (226)
Q Consensus 191 ~~~~l~ell~~sD~v~l~-----~~~d~i~~~~~~~ 221 (226)
...+|++++++||+|++| +|..+|+.+++++
T Consensus 81 ~~~~l~ell~~aDiv~~~~plt~~T~~li~~~~l~~ 116 (178)
T PF02826_consen 81 EYVSLDELLAQADIVSLHLPLTPETRGLINAEFLAK 116 (178)
T ss_dssp EESSHHHHHHH-SEEEE-SSSSTTTTTSBSHHHHHT
T ss_pred eeeehhhhcchhhhhhhhhccccccceeeeeeeeec
Confidence 578999999999999999 6688999888764
No 24
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=99.73 E-value=1.7e-17 Score=142.46 Aligned_cols=142 Identities=17% Similarity=0.224 Sum_probs=113.6
Q ss_pred hcCCceEEEEcCC-----------------CCCHHHHhcCCCceEEEecCccCCccchh-HHHhCCcEEE------ecCC
Q 027226 52 VIANYHLCVVKTM-----------------RLDSNCISRANQMKLIMQFGVGLEGVDIN-AATRCGIKVA------RIPG 107 (226)
Q Consensus 52 ~~~~adv~i~~~~-----------------~~~~~~l~~~~~Lk~I~~~~aG~d~id~~-~~~~~gi~v~------n~~~ 107 (226)
.++++|+++...+ .+++++++.+| .++...+|+++.+++ .++++||+|+ |++.
T Consensus 51 ~~~~~~~~i~p~~~~~~~~~i~~~~~~~~~~l~~~~l~~~~---~~~~~~~G~~~~~l~~~a~~~gi~v~~~~~~~~va~ 127 (287)
T TIGR02853 51 DLTTLDVVILPVPGTSHDGKVATVFSNEKVVLTPELLESTK---GHCTIYVGISNPYLEQLAADAGVKLIELFERDDVAI 127 (287)
T ss_pred hhccCCEEEECCccccCCceEecccccCCccccHHHHHhcC---CCCEEEEecCCHHHHHHHHHCCCeEEEEEeccceEE
Confidence 3688898886311 24578888887 367788899999888 8899999999 8887
Q ss_pred CCCCCchhHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCCCCCccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCC
Q 027226 108 DVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA 187 (226)
Q Consensus 108 ~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~ 187 (226)
+ |+.++||+++++++.. .+.+++|++++|+|+|.||+.+|++|++||++|++++|+..
T Consensus 128 ~---n~~~~Ae~ai~~al~~-------------------~~~~l~gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~~ 185 (287)
T TIGR02853 128 Y---NSIPTAEGAIMMAIEH-------------------TDFTIHGSNVMVLGFGRTGMTIARTFSALGARVFVGARSSA 185 (287)
T ss_pred E---ccHhHHHHHHHHHHHh-------------------cCCCCCCCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 7 8899999999977743 13489999999999999999999999999999999999864
Q ss_pred CC----------CcccChhhhcccCcEEEEeccCCcccccc
Q 027226 188 SH----------SQVSCQSSGWHCKQVISIFNEKGFSSGEY 218 (226)
Q Consensus 188 ~~----------~~~~~l~ell~~sD~v~l~~~~d~i~~~~ 218 (226)
.. ....++++++.++|+++++-...+++.+.
T Consensus 186 ~~~~~~~~g~~~~~~~~l~~~l~~aDiVint~P~~ii~~~~ 226 (287)
T TIGR02853 186 DLARITEMGLIPFPLNKLEEKVAEIDIVINTIPALVLTADV 226 (287)
T ss_pred HHHHHHHCCCeeecHHHHHHHhccCCEEEECCChHHhCHHH
Confidence 31 12345778899999999986555555443
No 25
>PF00389 2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; InterPro: IPR006139 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. The catalytic domain contains a number of conserved charged residues which may play a role in the catalytic mechanism. The NAD-binding domain is described in IPR006140 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 2DLD_A 2G76_B 3DC2_B 1YGY_B 3DDN_A 3KB6_B 3K5P_A 3EVT_A 1WWK_B 1GDH_A ....
Probab=99.70 E-value=2.9e-17 Score=125.63 Aligned_cols=99 Identities=22% Similarity=0.385 Sum_probs=76.2
Q ss_pred EEEeCCCCCCchhhHHHHHhcCCCeEEecC-CCCChhhhcCCceEEEEcCCC-CCHHHHhcCCCceEEEecCccCCccch
Q 027226 15 VLFCGPHFPASHNYTKEYLQNYPSIQVDVV-PISDVPDVIANYHLCVVKTMR-LDSNCISRANQMKLIMQFGVGLEGVDI 92 (226)
Q Consensus 15 Ilv~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~adv~i~~~~~-~~~~~l~~~~~Lk~I~~~~aG~d~id~ 92 (226)
||++.+..++. .+.+.+.+ ++.+... +.+++.+.++++|+++++... ++++.++.+|+||||++.|+|+|++|+
T Consensus 1 ili~~~~~~~~---~~~l~~~~-~v~~~~~~~~~~~~~~l~~~d~ii~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~id~ 76 (133)
T PF00389_consen 1 ILITDPLPDEE---IERLEEGF-EVEFCDSPSEEELAERLKDADAIIVGSGTPLTAEVLEAAPNLKLISTAGAGVDNIDL 76 (133)
T ss_dssp EEESSS-SHHH---HHHHHHTS-EEEEESSSSHHHHHHHHTTESEEEESTTSTBSHHHHHHHTT-SEEEESSSSCTTB-H
T ss_pred eEEeccCCHHH---HHHHHCCc-eEEEeCCCCHHHHHHHhCCCeEEEEcCCCCcCHHHHhccceeEEEEEcccccCcccH
Confidence 57777664332 22233334 6655443 345677889999999997655 999999999999999999999999999
Q ss_pred hHHHhCCcEEEecCCCCCCCchhHHHHH
Q 027226 93 NAATRCGIKVARIPGDVTGNAASCAELT 120 (226)
Q Consensus 93 ~~~~~~gi~v~n~~~~~~~~~~~vAE~~ 120 (226)
+++.++||.|+|+||+ ++.+||||+
T Consensus 77 ~~a~~~gI~V~n~~g~---~~~aVAE~a 101 (133)
T PF00389_consen 77 EAAKERGIPVTNVPGY---NAEAVAEHA 101 (133)
T ss_dssp HHHHHTTSEEEE-TTT---THHHHHHHH
T ss_pred HHHhhCeEEEEEeCCc---CCcchhccc
Confidence 9999999999999999 899999999
No 26
>KOG0067 consensus Transcription factor CtBP [Transcription]
Probab=99.69 E-value=4.1e-17 Score=140.51 Aligned_cols=143 Identities=24% Similarity=0.371 Sum_probs=129.9
Q ss_pred CCCCCHHHHhcCCCceEEEecCccCCccchhHHHhCCcEEEecCCCCCCCchhHHHHHHHHHHHHhhcHHHHHHHHHhCC
Q 027226 63 TMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKK 142 (226)
Q Consensus 63 ~~~~~~~~l~~~~~Lk~I~~~~aG~d~id~~~~~~~gi~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~ 142 (226)
+..++++.+++++-||++...+.|+|++|+.++.+.+|.+||.|+. .-+.+|.-++.++|.++|+-....+..+++.
T Consensus 82 ~i~l~reDlEkfkalRv~~rig~g~dn~dikaAseL~iavC~ip~~---~Ve~~a~stl~hIl~l~rrntw~cq~l~eg~ 158 (435)
T KOG0067|consen 82 TITLPREDLEKFKALRVIVRIGSGYDNIDIKAASELGIAVCNIPSD---AVEETADSTLCHILNLYRRNTWLCQALREGT 158 (435)
T ss_pred ecccchhhHHHhhhhceeeeeccccchhhhhhhhhheeeeecccch---hHHHHHHHHHHHHHhhhcccchhhhhhcccc
Confidence 4578999999999999999999999999999999999999999998 5599999999999999999999999999998
Q ss_pred CCCC---------CCCccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCCC-------cccChhhhcccCcEEE
Q 027226 143 LGVP---------TGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHS-------QVSCQSSGWHCKQVIS 206 (226)
Q Consensus 143 w~~~---------~~~~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~~-------~~~~l~ell~~sD~v~ 206 (226)
|... ....+.|.++|++|+|++|++|+.++++||+.|+.||++..+.. ....|++++.++|.++
T Consensus 159 ~~q~~~q~~e~a~g~~~~~G~~~g~~g~gr~g~av~~~A~afg~~~ifydp~~~~g~~~~lg~~rVytlqd~~~~sd~~S 238 (435)
T KOG0067|consen 159 CTQGLEQVREAACGLARIRGPTLGLIGFGRTGQAVALRAKAFGFVVIFYDPYLIDGIDKSLGLQRVYTLQDLLYQSDCVS 238 (435)
T ss_pred eeechhhhhhhhhccccccccceeeeccccccceehhhhhcccceeeeecchhhhhhhhhcccceecccchhhhhcccee
Confidence 8542 34678999999999999999999999999999999999877651 2445899999999999
Q ss_pred Ee
Q 027226 207 IF 208 (226)
Q Consensus 207 l~ 208 (226)
+|
T Consensus 239 ~h 240 (435)
T KOG0067|consen 239 LH 240 (435)
T ss_pred ee
Confidence 99
No 27
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=99.56 E-value=8.2e-15 Score=132.27 Aligned_cols=130 Identities=15% Similarity=0.154 Sum_probs=98.6
Q ss_pred CCceEEE-ecCccCCccc-hhHHHhCCcEEEecCCCCCCCchhHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCCCCCccC
Q 027226 75 NQMKLIM-QFGVGLEGVD-INAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLL 152 (226)
Q Consensus 75 ~~Lk~I~-~~~aG~d~id-~~~~~~~gi~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~ 152 (226)
++++-+. -+++|+..+- +...-..+|+|+|++++ +..+++|+++++++++...+ ++.+ +..+.
T Consensus 189 ~~i~G~~EeTttGv~rl~~m~~~g~L~iPV~nv~d~---~tk~~aD~~~G~~~s~~d~~------~R~~------~~~La 253 (476)
T PTZ00075 189 KKIVGVSEETTTGVHRLYKMLKKGELLFPAINVNDS---VTKSKFDNIYGCRHSLIDGI------FRAT------DVMIA 253 (476)
T ss_pred hccEeeeecchHHHHHHHHHHHCCCCCceEEEeCCc---chHHHHHHHHHHHHHHHHHH------HHhc------CCCcC
Confidence 3444333 4577887752 22223368999999999 77999999999999988333 2322 46899
Q ss_pred CCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC-------CcccChhhhcccCcEEEEe-ccCCccccccc
Q 027226 153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH-------SQVSCQSSGWHCKQVISIF-NEKGFSSGEYC 219 (226)
Q Consensus 153 gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~-------~~~~~l~ell~~sD~v~l~-~~~d~i~~~~~ 219 (226)
||||||+|+|.||+.+|++|++|||+|+++++.+... ....+++++++.+|+++++ .+.++|+.+.+
T Consensus 254 GKtVgVIG~G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~~G~~~~~leell~~ADIVI~atGt~~iI~~e~~ 328 (476)
T PTZ00075 254 GKTVVVCGYGDVGKGCAQALRGFGARVVVTEIDPICALQAAMEGYQVVTLEDVVETADIFVTATGNKDIITLEHM 328 (476)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHhcCceeccHHHHHhcCCEEEECCCcccccCHHHH
Confidence 9999999999999999999999999999997764332 2345789999999999998 44566665555
No 28
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=99.47 E-value=8.3e-13 Score=114.04 Aligned_cols=146 Identities=18% Similarity=0.199 Sum_probs=107.6
Q ss_pred hhcCCceEEEEcCC-----------------CCCHHHHhcCCCceEEEecCccCCccchhHHHhCCcEEEecCCCCC---
Q 027226 51 DVIANYHLCVVKTM-----------------RLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVT--- 110 (226)
Q Consensus 51 ~~~~~adv~i~~~~-----------------~~~~~~l~~~~~Lk~I~~~~aG~d~id~~~~~~~gi~v~n~~~~~~--- 110 (226)
+.++++|+++...+ .++.+.++.+|++..+. .|.+.++++ +.+.++||++.+..+...
T Consensus 51 ~~~~~ad~ii~~~p~~~~~~~i~~~~~~~~~~~~~~~l~~l~~~~~v~-~G~~~~~~~-~~~~~~gi~~~~~~~~~~~~~ 128 (296)
T PRK08306 51 EALSDVDVIILPVPGTNDEGNVDTVFSNEKLVLTEELLELTPEHCTIF-SGIANPYLK-ELAKETNRKLVELFERDDVAI 128 (296)
T ss_pred HHhccCCEEEECCccccCCceeeccccccCCcchHHHHHhcCCCCEEE-EecCCHHHH-HHHHHCCCeEEEEeccchhhh
Confidence 44788999886421 12678899999997555 588888987 678999999998764200
Q ss_pred CCchhHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCCCCCccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC-
Q 027226 111 GNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH- 189 (226)
Q Consensus 111 ~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~- 189 (226)
.++.++||.++...+.. ....++|++++|+|+|.+|+.+++.|+++|++|++++|++...
T Consensus 129 ~ns~~~aegav~~a~~~-------------------~~~~l~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~ 189 (296)
T PRK08306 129 LNSIPTAEGAIMMAIEH-------------------TPITIHGSNVLVLGFGRTGMTLARTLKALGANVTVGARKSAHLA 189 (296)
T ss_pred hccHhHHHHHHHHHHHh-------------------CCCCCCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHH
Confidence 16788888877754321 1356889999999999999999999999999999999986431
Q ss_pred ---------CcccChhhhcccCcEEEEeccCCccccc
Q 027226 190 ---------SQVSCQSSGWHCKQVISIFNEKGFSSGE 217 (226)
Q Consensus 190 ---------~~~~~l~ell~~sD~v~l~~~~d~i~~~ 217 (226)
....++.+.+..+|++.......+++.+
T Consensus 190 ~~~~~G~~~~~~~~l~~~l~~aDiVI~t~p~~~i~~~ 226 (296)
T PRK08306 190 RITEMGLSPFHLSELAEEVGKIDIIFNTIPALVLTKE 226 (296)
T ss_pred HHHHcCCeeecHHHHHHHhCCCCEEEECCChhhhhHH
Confidence 1223567788999999876444444443
No 29
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=99.13 E-value=3.2e-11 Score=104.19 Aligned_cols=71 Identities=30% Similarity=0.392 Sum_probs=57.6
Q ss_pred CCccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC-------CcccChhhhcccCcEEEEe----ccCCcccc
Q 027226 148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH-------SQVSCQSSGWHCKQVISIF----NEKGFSSG 216 (226)
Q Consensus 148 ~~~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~-------~~~~~l~ell~~sD~v~l~----~~~d~i~~ 216 (226)
...|+||||||||+|+||+++|++|++|||+|+++++..+.. ....+++++++.||++++| .+.+++++
T Consensus 11 ~~~LkgKtVGIIG~GsIG~amA~nL~d~G~~ViV~~r~~~s~~~A~~~G~~v~sl~Eaak~ADVV~llLPd~~t~~V~~~ 90 (335)
T PRK13403 11 VELLQGKTVAVIGYGSQGHAQAQNLRDSGVEVVVGVRPGKSFEVAKADGFEVMSVSEAVRTAQVVQMLLPDEQQAHVYKA 90 (335)
T ss_pred hhhhCcCEEEEEeEcHHHHHHHHHHHHCcCEEEEEECcchhhHHHHHcCCEECCHHHHHhcCCEEEEeCCChHHHHHHHH
Confidence 468999999999999999999999999999999997754331 2345899999999999999 34455544
Q ss_pred cc
Q 027226 217 EY 218 (226)
Q Consensus 217 ~~ 218 (226)
+.
T Consensus 91 ei 92 (335)
T PRK13403 91 EV 92 (335)
T ss_pred HH
Confidence 33
No 30
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=98.80 E-value=9.3e-09 Score=92.63 Aligned_cols=124 Identities=19% Similarity=0.198 Sum_probs=80.3
Q ss_pred EecCccCCccc-hhHHHhCCcEEEecCCCCCCCchhHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCCCCCccCCCEEEEE
Q 027226 81 MQFGVGLEGVD-INAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFIL 159 (226)
Q Consensus 81 ~~~~aG~d~id-~~~~~~~gi~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~gktvgIv 159 (226)
=-+++|+..+- +....+.++||.|+++..+ ...-|...+.--+....+.+ .....+.|++|+|+
T Consensus 154 EeTttGv~rl~~~~~~~~l~~Pv~~vn~s~~---K~~~dn~~gt~~s~~~ai~r------------at~~~l~Gk~VlVi 218 (425)
T PRK05476 154 EETTTGVHRLYAMAKDGALKFPAINVNDSVT---KSKFDNRYGTGESLLDGIKR------------ATNVLIAGKVVVVA 218 (425)
T ss_pred ecchHHHHHHHHHHHcCCCCCCEEecCCccc---CccccccHHHHhhhHHHHHH------------hccCCCCCCEEEEE
Confidence 34577877752 2222346899999998733 43323221111111111110 11345899999999
Q ss_pred cCChHHHHHHHHHccCCCEEEEEcCCCCCC-------CcccChhhhcccCcEEEEe-ccCCccccccc
Q 027226 160 GFGNIGVELAKRLRPFGVKIIATKRSWASH-------SQVSCQSSGWHCKQVISIF-NEKGFSSGEYC 219 (226)
Q Consensus 160 G~G~IG~~vA~~l~afG~~V~~~~r~~~~~-------~~~~~l~ell~~sD~v~l~-~~~d~i~~~~~ 219 (226)
|+|.||+.+|++|+++|++|+++++.+... ....++++++..+|+++.. .+.++++.+.+
T Consensus 219 G~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~~G~~v~~l~eal~~aDVVI~aTG~~~vI~~~~~ 286 (425)
T PRK05476 219 GYGDVGKGCAQRLRGLGARVIVTEVDPICALQAAMDGFRVMTMEEAAELGDIFVTATGNKDVITAEHM 286 (425)
T ss_pred CCCHHHHHHHHHHHhCCCEEEEEcCCchhhHHHHhcCCEecCHHHHHhCCCEEEECCCCHHHHHHHHH
Confidence 999999999999999999999999876442 2334678899999999876 33455554443
No 31
>PLN02494 adenosylhomocysteinase
Probab=98.77 E-value=9.4e-09 Score=93.11 Aligned_cols=72 Identities=18% Similarity=0.212 Sum_probs=57.3
Q ss_pred CccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC-------CcccChhhhcccCcEEEEe-ccCCcccccccc
Q 027226 149 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH-------SQVSCQSSGWHCKQVISIF-NEKGFSSGEYCS 220 (226)
Q Consensus 149 ~~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~-------~~~~~l~ell~~sD~v~l~-~~~d~i~~~~~~ 220 (226)
..+.||+|+|+|+|.||+.+|+++++|||+|+++++++... ....+++++++.+|+++.. .+.++++.+.+.
T Consensus 250 i~LaGKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~~~G~~vv~leEal~~ADVVI~tTGt~~vI~~e~L~ 329 (477)
T PLN02494 250 VMIAGKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQALMEGYQVLTLEDVVSEADIFVTTTGNKDIIMVDHMR 329 (477)
T ss_pred CccCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHHHHhcCCeeccHHHHHhhCCEEEECCCCccchHHHHHh
Confidence 45899999999999999999999999999999998876431 2334688999999999986 334555555443
No 32
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=98.64 E-value=1.7e-08 Score=79.28 Aligned_cols=73 Identities=22% Similarity=0.353 Sum_probs=51.3
Q ss_pred CCccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC-------CcccChhhhcccCcEEEEe-ccCCccccccc
Q 027226 148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH-------SQVSCQSSGWHCKQVISIF-NEKGFSSGEYC 219 (226)
Q Consensus 148 ~~~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~-------~~~~~l~ell~~sD~v~l~-~~~d~i~~~~~ 219 (226)
...+.||++.|+|||.+|+.+|+.|+++|++|+.++..|-.. ++...++++++.+|+++.. ...++|..+.+
T Consensus 18 ~~~l~Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DPi~alqA~~dGf~v~~~~~a~~~adi~vtaTG~~~vi~~e~~ 97 (162)
T PF00670_consen 18 NLMLAGKRVVVIGYGKVGKGIARALRGLGARVTVTEIDPIRALQAAMDGFEVMTLEEALRDADIFVTATGNKDVITGEHF 97 (162)
T ss_dssp -S--TTSEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTT-EEE-HHHHTTT-SEEEE-SSSSSSB-HHHH
T ss_pred ceeeCCCEEEEeCCCcccHHHHHHHhhCCCEEEEEECChHHHHHhhhcCcEecCHHHHHhhCCEEEECCCCccccCHHHH
Confidence 467999999999999999999999999999999999875432 4566789999999998875 66677766654
Q ss_pred c
Q 027226 220 S 220 (226)
Q Consensus 220 ~ 220 (226)
.
T Consensus 98 ~ 98 (162)
T PF00670_consen 98 R 98 (162)
T ss_dssp H
T ss_pred H
Confidence 3
No 33
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=98.61 E-value=4.8e-08 Score=87.54 Aligned_cols=72 Identities=24% Similarity=0.291 Sum_probs=55.4
Q ss_pred CCccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC-------CcccChhhhcccCcEEEEe-ccCCccccccc
Q 027226 148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH-------SQVSCQSSGWHCKQVISIF-NEKGFSSGEYC 219 (226)
Q Consensus 148 ~~~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~-------~~~~~l~ell~~sD~v~l~-~~~d~i~~~~~ 219 (226)
...+.|++|+|+|+|.||+.+|+++++||++|+++++.+... ....+++++++.+|+++.. .+.++++.+.+
T Consensus 190 ~~~l~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~~G~~v~~leeal~~aDVVItaTG~~~vI~~~~~ 269 (406)
T TIGR00936 190 NLLIAGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAAMDGFRVMTMEEAAKIGDIFITATGNKDVIRGEHF 269 (406)
T ss_pred CCCCCcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHHhcCCEeCCHHHHHhcCCEEEECCCCHHHHHHHHH
Confidence 346899999999999999999999999999999998765332 2234578888999997665 44455554333
No 34
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=98.49 E-value=2e-07 Score=81.50 Aligned_cols=61 Identities=28% Similarity=0.345 Sum_probs=51.5
Q ss_pred CCccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC--------CcccChhhhcccCcEEEEe
Q 027226 148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH--------SQVSCQSSGWHCKQVISIF 208 (226)
Q Consensus 148 ~~~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~--------~~~~~l~ell~~sD~v~l~ 208 (226)
...++++||||||+|++|+++|+.|+.+|++|+++++..... ....+.+++++.+|+|.++
T Consensus 12 ~~~L~gktIgIIG~GsmG~AlA~~L~~sG~~Vvv~~r~~~~s~~~A~~~G~~~~s~~eaa~~ADVVvLa 80 (330)
T PRK05479 12 LSLIKGKKVAIIGYGSQGHAHALNLRDSGVDVVVGLREGSKSWKKAEADGFEVLTVAEAAKWADVIMIL 80 (330)
T ss_pred hhhhCCCEEEEEeeHHHHHHHHHHHHHCCCEEEEEECCchhhHHHHHHCCCeeCCHHHHHhcCCEEEEc
Confidence 467999999999999999999999999999999887653322 2234778999999999998
No 35
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=98.32 E-value=6e-07 Score=73.35 Aligned_cols=70 Identities=24% Similarity=0.331 Sum_probs=51.8
Q ss_pred CCccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC--------CcccChhhhcc-cCcEEEEeccCCccccc
Q 027226 148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH--------SQVSCQSSGWH-CKQVISIFNEKGFSSGE 217 (226)
Q Consensus 148 ~~~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~--------~~~~~l~ell~-~sD~v~l~~~~d~i~~~ 217 (226)
+.+++||+++|+|+|++|+.+|++|..+|++|+++|++.... ....+.++++. .+|++....-.+.|+.+
T Consensus 23 ~~~l~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~~~~~g~~~v~~~~l~~~~~Dv~vp~A~~~~I~~~ 101 (200)
T cd01075 23 TDSLEGKTVAVQGLGKVGYKLAEHLLEEGAKLIVADINEEAVARAAELFGATVVAPEEIYSVDADVFAPCALGGVINDD 101 (200)
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcCCEEEcchhhccccCCEEEecccccccCHH
Confidence 567999999999999999999999999999999999875421 11123355554 68888755444555443
No 36
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=98.27 E-value=1.4e-06 Score=75.97 Aligned_cols=58 Identities=29% Similarity=0.368 Sum_probs=46.8
Q ss_pred cCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC--------CcccChhhhcccCcEEEEe
Q 027226 151 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH--------SQVSCQSSGWHCKQVISIF 208 (226)
Q Consensus 151 l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~--------~~~~~l~ell~~sD~v~l~ 208 (226)
|+||+|||||+|++|+++|+.|+.+|++|+++++..... ....+..++++.+|+|.++
T Consensus 1 l~~kkIgiIG~G~mG~AiA~~L~~sG~~Viv~~~~~~~~~~~a~~~Gv~~~s~~ea~~~ADiVvLa 66 (314)
T TIGR00465 1 LKGKTVAIIGYGSQGHAQALNLRDSGLNVIVGLRKGGASWKKATEDGFKVGTVEEAIPQADLIMNL 66 (314)
T ss_pred CCcCEEEEEeEcHHHHHHHHHHHHCCCeEEEEECcChhhHHHHHHCCCEECCHHHHHhcCCEEEEe
Confidence 579999999999999999999999999987665543221 2234577888999999999
No 37
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=98.13 E-value=4.1e-06 Score=75.46 Aligned_cols=61 Identities=20% Similarity=0.297 Sum_probs=50.4
Q ss_pred CCccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC-------CcccChhhhcccCcEEEEe
Q 027226 148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH-------SQVSCQSSGWHCKQVISIF 208 (226)
Q Consensus 148 ~~~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~-------~~~~~l~ell~~sD~v~l~ 208 (226)
+..+.|++|+|+|+|.||+.+|++++++|++|+++++++... .....+++.+..+|+++..
T Consensus 197 ~~~l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~~G~~~~~~~e~v~~aDVVI~a 264 (413)
T cd00401 197 DVMIAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAMEGYEVMTMEEAVKEGDIFVTT 264 (413)
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHhcCCEEccHHHHHcCCCEEEEC
Confidence 456899999999999999999999999999999998875432 2233467788889988876
No 38
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=98.12 E-value=1.4e-06 Score=68.82 Aligned_cols=55 Identities=18% Similarity=0.292 Sum_probs=45.0
Q ss_pred CEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC--------CcccChhhhcccCcEEEEe
Q 027226 154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH--------SQVSCQSSGWHCKQVISIF 208 (226)
Q Consensus 154 ktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~--------~~~~~l~ell~~sD~v~l~ 208 (226)
++||+||+|..|+.+|+.|..-|.+|++|||++... ....+..|+...+|++.+.
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~g~~~~~s~~e~~~~~dvvi~~ 64 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSPEKAEALAEAGAEVADSPAEAAEQADVVILC 64 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHHHTTEEEESSHHHHHHHBSEEEE-
T ss_pred CEEEEEchHHHHHHHHHHHHhcCCeEEeeccchhhhhhhHHhhhhhhhhhhhHhhcccceEee
Confidence 589999999999999999999999999999985432 2467889999999988876
No 39
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=98.08 E-value=2.4e-06 Score=77.09 Aligned_cols=61 Identities=23% Similarity=0.248 Sum_probs=43.7
Q ss_pred CCccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCC------CC-------CCcccChhhhcccCcEEEEe
Q 027226 148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW------AS-------HSQVSCQSSGWHCKQVISIF 208 (226)
Q Consensus 148 ~~~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~------~~-------~~~~~~l~ell~~sD~v~l~ 208 (226)
...|+||||+|||+|+||++-|.-|+..|.+|++--|.. +. .....+++|+++.||+|+++
T Consensus 31 ~~~LkgKtIaIIGyGSqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~~dGF~v~~~~Ea~~~ADvVviL 104 (487)
T PRK05225 31 ASYLKGKKIVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGFKVGTYEELIPQADLVINL 104 (487)
T ss_pred hHHhCCCEEEEEccCHHHHHHhCCCccccceeEEeccccccccccchHHHHHhcCCccCCHHHHHHhCCEEEEc
Confidence 468999999999999999966665565566555211111 11 13456789999999999998
No 40
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.99 E-value=1.4e-05 Score=69.51 Aligned_cols=52 Identities=25% Similarity=0.158 Sum_probs=46.1
Q ss_pred CCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCCCcccChhhhcccCcEEEEe
Q 027226 152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSGWHCKQVISIF 208 (226)
Q Consensus 152 ~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~~~~~~l~ell~~sD~v~l~ 208 (226)
.+.+|||+|+|.+|+++|++|...|.+|..|+|+... +++++++.+|++.+.
T Consensus 3 ~~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~~~-----~~~~~~~~advvi~~ 54 (308)
T PRK14619 3 QPKTIAILGAGAWGSTLAGLASANGHRVRVWSRRSGL-----SLAAVLADADVIVSA 54 (308)
T ss_pred CCCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCCCC-----CHHHHHhcCCEEEEE
Confidence 3568999999999999999999999999999997543 678888899999887
No 41
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=97.97 E-value=8.5e-06 Score=63.89 Aligned_cols=58 Identities=28% Similarity=0.411 Sum_probs=46.0
Q ss_pred cCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC--------CcccChhhhcccCcEEEEe
Q 027226 151 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH--------SQVSCQSSGWHCKQVISIF 208 (226)
Q Consensus 151 l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~--------~~~~~l~ell~~sD~v~l~ 208 (226)
|++|||.|||||+-|.+-|.-|+.-|.+|+.-.|..... .+..+..|..+.+|++.++
T Consensus 2 l~~k~IAViGyGsQG~a~AlNLrDSG~~V~Vglr~~s~s~~~A~~~Gf~v~~~~eAv~~aDvV~~L 67 (165)
T PF07991_consen 2 LKGKTIAVIGYGSQGHAHALNLRDSGVNVIVGLREGSASWEKAKADGFEVMSVAEAVKKADVVMLL 67 (165)
T ss_dssp HCTSEEEEES-SHHHHHHHHHHHHCC-EEEEEE-TTCHHHHHHHHTT-ECCEHHHHHHC-SEEEE-
T ss_pred cCCCEEEEECCChHHHHHHHHHHhCCCCEEEEecCCCcCHHHHHHCCCeeccHHHHHhhCCEEEEe
Confidence 689999999999999999999999999999877765532 4567889999999999998
No 42
>PLN02712 arogenate dehydrogenase
Probab=97.94 E-value=1.5e-05 Score=76.14 Aligned_cols=62 Identities=27% Similarity=0.210 Sum_probs=50.2
Q ss_pred CCCccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC----C---cccChhhhcc-cCcEEEEe
Q 027226 147 TGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH----S---QVSCQSSGWH-CKQVISIF 208 (226)
Q Consensus 147 ~~~~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~----~---~~~~l~ell~-~sD~v~l~ 208 (226)
.+..+.+++|||||+|.||+.+|+.++.+|++|++|+|+.... . ...++++++. .+|+|.+.
T Consensus 363 ~~~~~~~~kIgIIGlG~mG~slA~~L~~~G~~V~~~dr~~~~~~a~~~Gv~~~~~~~el~~~~aDvVILa 432 (667)
T PLN02712 363 CVNDGSKLKIAIVGFGNFGQFLAKTMVKQGHTVLAYSRSDYSDEAQKLGVSYFSDADDLCEEHPEVILLC 432 (667)
T ss_pred ccCCCCCCEEEEEecCHHHHHHHHHHHHCcCEEEEEECChHHHHHHHcCCeEeCCHHHHHhcCCCEEEEC
Confidence 4577889999999999999999999999999999999974321 1 1335667665 58999988
No 43
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=97.86 E-value=1.2e-05 Score=69.06 Aligned_cols=54 Identities=17% Similarity=0.139 Sum_probs=46.0
Q ss_pred EEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC--------CcccChhhhcccCcEEEEe
Q 027226 155 TVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH--------SQVSCQSSGWHCKQVISIF 208 (226)
Q Consensus 155 tvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~--------~~~~~l~ell~~sD~v~l~ 208 (226)
+|||||+|.+|+.+|+.+...|++|++|+|++... ....+.++++..+|++.+.
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~ 62 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGPEVADELLAAGAVTAETARQVTEQADVIFTM 62 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCcccCCHHHHHhcCCEEEEe
Confidence 48999999999999999999999999999986432 1245677889999999987
No 44
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=97.81 E-value=2.1e-05 Score=67.69 Aligned_cols=55 Identities=20% Similarity=0.214 Sum_probs=46.7
Q ss_pred CEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC--------CcccChhhhcccCcEEEEe
Q 027226 154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH--------SQVSCQSSGWHCKQVISIF 208 (226)
Q Consensus 154 ktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~--------~~~~~l~ell~~sD~v~l~ 208 (226)
++|||||+|.+|+.+|+.+...|.+|++|+|++... ....+.++++..+|++.+.
T Consensus 3 ~~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~g~~~~~~~~e~~~~~d~vi~~ 65 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNPEAVAEVIAAGAETASTAKAVAEQCDVIITM 65 (296)
T ss_pred ceEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEe
Confidence 579999999999999999999999999999975432 1235678888999999988
No 45
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=97.77 E-value=0.00039 Score=62.08 Aligned_cols=149 Identities=11% Similarity=-0.022 Sum_probs=82.9
Q ss_pred CceEEEEcCCCCCHHHHhcC-CCceEEEecCccCCccchhHHHhCCcEEEecCCCCC---CC--chhHHHHHHHHHHHHh
Q 027226 55 NYHLCVVKTMRLDSNCISRA-NQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVT---GN--AASCAELTIYLMLGLL 128 (226)
Q Consensus 55 ~adv~i~~~~~~~~~~l~~~-~~Lk~I~~~~aG~d~id~~~~~~~gi~v~n~~~~~~---~~--~~~vAE~~l~~~L~~~ 128 (226)
++|+++-.. .+..+.++.+ ++--++..+.-..+....+.+.++++.......... .. -.++|+.+=+......
T Consensus 66 ~~dii~~Vk-~p~~~~~~~~~~g~~l~~~~~~a~~~~~~~~l~~~~~t~i~~e~i~~~~~~~~~l~~~~~iaG~~av~~a 144 (370)
T TIGR00518 66 DAELVLKVK-EPLPEEYGYLRHGQILFTYLHLAAERALTDALLDSGTTAIAYETVQTADGALPLLAPMSEVAGRLAAQVG 144 (370)
T ss_pred cCCEEEEeC-CCCHHHHhhcCCCcEEEEEeccCCCHHHHHHHHHcCCeEEEeeeeeccCCCCccccchhHHHHHHHHHHH
Confidence 478887432 3445555554 455555555554555555677777766544222100 00 0223333322221111
Q ss_pred -hcHHHHHHHHHhCCC-CCCCCCccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC------C---------c
Q 027226 129 -RKQNEMRMAIEQKKL-GVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH------S---------Q 191 (226)
Q Consensus 129 -R~~~~~~~~~~~~~w-~~~~~~~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~------~---------~ 191 (226)
..+.+ . ..|+= .......+.+++|.|+|.|.+|+.+++.|+.+|++|.++|+++... . .
T Consensus 145 a~~~~~---~-~~g~~~~~~~~~~l~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~g~~v~~~~~~ 220 (370)
T TIGR00518 145 AYHLEK---T-QGGRGVLLGGVPGVEPGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDAEFGGRIHTRYSN 220 (370)
T ss_pred HHHhHh---h-cCCcceeecCCCCCCCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhcCceeEeccCC
Confidence 11111 0 00110 0011234678899999999999999999999999999999864321 0 1
Q ss_pred ccChhhhcccCcEEEEe
Q 027226 192 VSCQSSGWHCKQVISIF 208 (226)
Q Consensus 192 ~~~l~ell~~sD~v~l~ 208 (226)
...+.+.++.+|+++..
T Consensus 221 ~~~l~~~l~~aDvVI~a 237 (370)
T TIGR00518 221 AYEIEDAVKRADLLIGA 237 (370)
T ss_pred HHHHHHHHccCCEEEEc
Confidence 23467778889988875
No 46
>PLN02256 arogenate dehydrogenase
Probab=97.76 E-value=4e-05 Score=66.58 Aligned_cols=58 Identities=29% Similarity=0.249 Sum_probs=45.8
Q ss_pred cCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC-------CcccChhhhc-ccCcEEEEe
Q 027226 151 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH-------SQVSCQSSGW-HCKQVISIF 208 (226)
Q Consensus 151 l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~-------~~~~~l~ell-~~sD~v~l~ 208 (226)
-.+++|||||+|.||+.+|+.++..|.+|++|+++.... ....++++++ ..+|++.+.
T Consensus 34 ~~~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~~~~~a~~~gv~~~~~~~e~~~~~aDvVila 99 (304)
T PLN02256 34 SRKLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSDYSDIAAELGVSFFRDPDDFCEEHPDVVLLC 99 (304)
T ss_pred CCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECccHHHHHHHcCCeeeCCHHHHhhCCCCEEEEe
Confidence 356799999999999999999999999999999985321 1123556665 468999988
No 47
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=97.75 E-value=7.4e-05 Score=59.40 Aligned_cols=66 Identities=21% Similarity=0.248 Sum_probs=54.3
Q ss_pred CccCCCEEEEEcCChH-HHHHHHHHccCCCEEEEEcCCCCCCCcccChhhhcccCcEEEEeccC-Ccccccccc
Q 027226 149 ETLLGKTVFILGFGNI-GVELAKRLRPFGVKIIATKRSWASHSQVSCQSSGWHCKQVISIFNEK-GFSSGEYCS 220 (226)
Q Consensus 149 ~~l~gktvgIvG~G~I-G~~vA~~l~afG~~V~~~~r~~~~~~~~~~l~ell~~sD~v~l~~~~-d~i~~~~~~ 220 (226)
..+.||++.|+|.|.+ |+.+|+.|...|++|...+|+. .++.+.+.++|+++....+ .++..+.+.
T Consensus 40 ~~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~------~~l~~~l~~aDiVIsat~~~~ii~~~~~~ 107 (168)
T cd01080 40 IDLAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKT------KNLKEHTKQADIVIVAVGKPGLVKGDMVK 107 (168)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCc------hhHHHHHhhCCEEEEcCCCCceecHHHcc
Confidence 5799999999999985 9999999999999999999873 3778899999999988333 455555443
No 48
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.74 E-value=7.4e-05 Score=64.07 Aligned_cols=68 Identities=15% Similarity=0.211 Sum_probs=57.7
Q ss_pred CCccCCCEEEEEcCChH-HHHHHHHHccCCCEEEEEcCCCCCCCcccChhhhcccCcEEEEe-ccCCccccccccc
Q 027226 148 GETLLGKTVFILGFGNI-GVELAKRLRPFGVKIIATKRSWASHSQVSCQSSGWHCKQVISIF-NEKGFSSGEYCSR 221 (226)
Q Consensus 148 ~~~l~gktvgIvG~G~I-G~~vA~~l~afG~~V~~~~r~~~~~~~~~~l~ell~~sD~v~l~-~~~d~i~~~~~~~ 221 (226)
+.++.||+|.|||.|.| |+.+|.+|...|++|+.+..+ ..+|.+.+++||+++.. .+.+++..++++.
T Consensus 153 ~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVt~~hs~------t~~l~~~~~~ADIVV~avG~~~~i~~~~ik~ 222 (285)
T PRK14189 153 GIPLRGAHAVVIGRSNIVGKPMAMLLLQAGATVTICHSK------TRDLAAHTRQADIVVAAVGKRNVLTADMVKP 222 (285)
T ss_pred CCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEecCC------CCCHHHHhhhCCEEEEcCCCcCccCHHHcCC
Confidence 46899999999999999 999999999999999987543 23789999999999988 7777777766553
No 49
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=97.73 E-value=1.5e-05 Score=56.88 Aligned_cols=54 Identities=24% Similarity=0.293 Sum_probs=43.3
Q ss_pred EEEEEcCChHHHHHHHHHccCC---CEEE-EEcCCCCCC------Cc----ccChhhhcccCcEEEEe
Q 027226 155 TVFILGFGNIGVELAKRLRPFG---VKII-ATKRSWASH------SQ----VSCQSSGWHCKQVISIF 208 (226)
Q Consensus 155 tvgIvG~G~IG~~vA~~l~afG---~~V~-~~~r~~~~~------~~----~~~l~ell~~sD~v~l~ 208 (226)
||||||+|++|+++++.+..-| .+|+ +++|+++.. .+ ..+..+++..+|++.+.
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~advvila 68 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYGVQATADDNEEAAQEADVVILA 68 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCTTEEESEEHHHHHHHTSEEEE-
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhccccccCChHHhhccCCEEEEE
Confidence 6999999999999999999999 8999 448876542 11 22677888999999887
No 50
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.68 E-value=0.00012 Score=63.34 Aligned_cols=66 Identities=11% Similarity=0.121 Sum_probs=55.7
Q ss_pred CCccCCCEEEEEcCC-hHHHHHHHHHccCCCEEEEEcCCCCCCCcccChhhhcccCcEEEEe-ccCCccccccc
Q 027226 148 GETLLGKTVFILGFG-NIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSGWHCKQVISIF-NEKGFSSGEYC 219 (226)
Q Consensus 148 ~~~l~gktvgIvG~G-~IG~~vA~~l~afG~~V~~~~r~~~~~~~~~~l~ell~~sD~v~l~-~~~d~i~~~~~ 219 (226)
+.++.||+|+|||.| .+|+.+|.+|..-|++|+.|+++.+ ++.++.++||+++.. ...++|...++
T Consensus 154 ~i~l~Gk~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t~------~l~e~~~~ADIVIsavg~~~~v~~~~i 221 (301)
T PRK14194 154 CGDLTGKHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRST------DAKALCRQADIVVAAVGRPRLIDADWL 221 (301)
T ss_pred CCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEECCCCC------CHHHHHhcCCEEEEecCChhcccHhhc
Confidence 468999999999996 9999999999999999999977633 678999999999887 55566665554
No 51
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=97.67 E-value=0.00018 Score=64.24 Aligned_cols=52 Identities=17% Similarity=0.098 Sum_probs=45.5
Q ss_pred CCCEEEEEc-CChHHHHHHHHHccCCCEEEEEcCCCCCCCcccChhhhcccCcEEEEe
Q 027226 152 LGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSGWHCKQVISIF 208 (226)
Q Consensus 152 ~gktvgIvG-~G~IG~~vA~~l~afG~~V~~~~r~~~~~~~~~~l~ell~~sD~v~l~ 208 (226)
..++|+||| +|.+|+.+|+.|+.-|..|.+|+++.. .+.+++++.+|+|.+.
T Consensus 97 ~~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~~-----~~~~~~~~~aDlVila 149 (374)
T PRK11199 97 DLRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDDW-----DRAEDILADAGMVIVS 149 (374)
T ss_pred ccceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCcc-----hhHHHHHhcCCEEEEe
Confidence 558999999 999999999999999999999998632 3567888999999887
No 52
>PRK08818 prephenate dehydrogenase; Provisional
Probab=97.63 E-value=0.00013 Score=64.92 Aligned_cols=55 Identities=20% Similarity=0.167 Sum_probs=46.2
Q ss_pred cCCCEEEEEcC-ChHHHHHHHHHcc-CCCEEEEEcCCCCCCCcccChhhhcccCcEEEEe
Q 027226 151 LLGKTVFILGF-GNIGVELAKRLRP-FGVKIIATKRSWASHSQVSCQSSGWHCKQVISIF 208 (226)
Q Consensus 151 l~gktvgIvG~-G~IG~~vA~~l~a-fG~~V~~~~r~~~~~~~~~~l~ell~~sD~v~l~ 208 (226)
+...||+|||+ |-||+.+|+.++. +|.+|+++|+... ...++++.++.+|+|.+.
T Consensus 2 ~~~~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~~d~---~~~~~~~~v~~aDlVila 58 (370)
T PRK08818 2 IAQPVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDPADP---GSLDPATLLQRADVLIFS 58 (370)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcCCcc---ccCCHHHHhcCCCEEEEe
Confidence 35679999999 9999999999984 6999999998522 244677889999999998
No 53
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=97.62 E-value=7.1e-05 Score=64.68 Aligned_cols=55 Identities=11% Similarity=0.197 Sum_probs=46.3
Q ss_pred CEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC--------CcccChhhhcccCcEEEEe
Q 027226 154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH--------SQVSCQSSGWHCKQVISIF 208 (226)
Q Consensus 154 ktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~--------~~~~~l~ell~~sD~v~l~ 208 (226)
++|||||+|.+|..+|+.|...|.+|++|||++... ....+..++++.+|++.+.
T Consensus 2 ~~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~~~~~~~~~~g~~~~~s~~~~~~~aDvVi~~ 64 (296)
T PRK15461 2 AAIAFIGLGQMGSPMASNLLKQGHQLQVFDVNPQAVDALVDKGATPAASPAQAAAGAEFVITM 64 (296)
T ss_pred CeEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCcccCCHHHHHhcCCEEEEe
Confidence 479999999999999999999999999999975432 1245677888999999887
No 54
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=97.61 E-value=6.8e-05 Score=65.55 Aligned_cols=71 Identities=24% Similarity=0.306 Sum_probs=57.7
Q ss_pred CccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC-------CcccChhhhcccCcEEEEe-ccCCccccccc
Q 027226 149 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH-------SQVSCQSSGWHCKQVISIF-NEKGFSSGEYC 219 (226)
Q Consensus 149 ~~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~-------~~~~~l~ell~~sD~v~l~-~~~d~i~~~~~ 219 (226)
-.+.||++.|.|||..|+-+|.+|+++|++|+.+.-.|-.. ++...+++....+|+++-. ...|+|..+-+
T Consensus 205 ~liaGK~vVV~GYG~vGrG~A~~~rg~GA~ViVtEvDPI~AleA~MdGf~V~~m~~Aa~~gDifiT~TGnkdVi~~eh~ 283 (420)
T COG0499 205 VLLAGKNVVVAGYGWVGRGIAMRLRGMGARVIVTEVDPIRALEAAMDGFRVMTMEEAAKTGDIFVTATGNKDVIRKEHF 283 (420)
T ss_pred eeecCceEEEecccccchHHHHHhhcCCCeEEEEecCchHHHHHhhcCcEEEEhHHhhhcCCEEEEccCCcCccCHHHH
Confidence 46889999999999999999999999999999987765443 4566678888999987665 66777766543
No 55
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=97.56 E-value=0.0002 Score=59.64 Aligned_cols=37 Identities=41% Similarity=0.583 Sum_probs=34.4
Q ss_pred CccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCC
Q 027226 149 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRS 185 (226)
Q Consensus 149 ~~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~ 185 (226)
.++.+++|.|.|||++|+.+|++|..+|++|+++..+
T Consensus 27 ~~l~~~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~ 63 (227)
T cd01076 27 IGLAGARVAIQGFGNVGSHAARFLHEAGAKVVAVSDS 63 (227)
T ss_pred CCccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECC
Confidence 6789999999999999999999999999999987665
No 56
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=97.56 E-value=5.6e-05 Score=57.78 Aligned_cols=63 Identities=19% Similarity=0.250 Sum_probs=49.7
Q ss_pred CccCCCEEEEEcCChHHHHHHHHHccCCCE-EEEEcCCCCCC--------------CcccChhhhcccCcEEEEeccC
Q 027226 149 ETLLGKTVFILGFGNIGVELAKRLRPFGVK-IIATKRSWASH--------------SQVSCQSSGWHCKQVISIFNEK 211 (226)
Q Consensus 149 ~~l~gktvgIvG~G~IG~~vA~~l~afG~~-V~~~~r~~~~~--------------~~~~~l~ell~~sD~v~l~~~~ 211 (226)
..++++++.|+|.|.+|++++..|...|++ |+.++|+.... ....++.+.+..+|+++.....
T Consensus 8 ~~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~~~~~~~~~~~~~~~~~~~DivI~aT~~ 85 (135)
T PF01488_consen 8 GDLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEFGGVNIEAIPLEDLEEALQEADIVINATPS 85 (135)
T ss_dssp STGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTGCSEEEEEGGGHCHHHHTESEEEE-SST
T ss_pred CCcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCccccceeeHHHHHHHHhhCCeEEEecCC
Confidence 479999999999999999999999999997 99999975431 1344555667888888877433
No 57
>PRK06545 prephenate dehydrogenase; Validated
Probab=97.51 E-value=0.00013 Score=64.75 Aligned_cols=55 Identities=20% Similarity=0.221 Sum_probs=44.3
Q ss_pred CEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC-------C-----cccChhhhcccCcEEEEe
Q 027226 154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH-------S-----QVSCQSSGWHCKQVISIF 208 (226)
Q Consensus 154 ktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~-------~-----~~~~l~ell~~sD~v~l~ 208 (226)
++|+|||+|.||+.+|+.++..|.+|..|++++... . ...+++++++.+|++.+.
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~G~~v~i~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~aDlVila 67 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAAGPDVFIIGYDPSAAQLARALGFGVIDELAADLQRAAAEADLIVLA 67 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHhcCCCCcccccCHHHHhcCCCEEEEe
Confidence 579999999999999999999998888888765432 0 123566788999999988
No 58
>PLN02712 arogenate dehydrogenase
Probab=97.51 E-value=0.00011 Score=70.24 Aligned_cols=60 Identities=30% Similarity=0.271 Sum_probs=46.2
Q ss_pred CccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC-------CcccChhhhc-ccCcEEEEe
Q 027226 149 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH-------SQVSCQSSGW-HCKQVISIF 208 (226)
Q Consensus 149 ~~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~-------~~~~~l~ell-~~sD~v~l~ 208 (226)
..-+.++|||||+|.||+.+|+.++.+|.+|++|+|+.... ....++++++ ..+|+|.+.
T Consensus 48 ~~~~~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~~~A~~~Gv~~~~d~~e~~~~~aDvViLa 115 (667)
T PLN02712 48 DNTTQLKIAIIGFGNYGQFLAKTLISQGHTVLAHSRSDHSLAARSLGVSFFLDPHDLCERHPDVILLC 115 (667)
T ss_pred ccCCCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHcCCEEeCCHHHHhhcCCCEEEEc
Confidence 34445799999999999999999999999999999973221 1123556655 568999998
No 59
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.48 E-value=0.00028 Score=60.59 Aligned_cols=67 Identities=16% Similarity=0.167 Sum_probs=56.6
Q ss_pred CCccCCCEEEEEcCCh-HHHHHHHHHccCCCEEEEEcCCCCCCCcccChhhhcccCcEEEEe-ccCCcccccccc
Q 027226 148 GETLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSGWHCKQVISIF-NEKGFSSGEYCS 220 (226)
Q Consensus 148 ~~~l~gktvgIvG~G~-IG~~vA~~l~afG~~V~~~~r~~~~~~~~~~l~ell~~sD~v~l~-~~~d~i~~~~~~ 220 (226)
+..+.||++.|+|.|. +|+.+|.+|...|++|+.+.++. .+|.+.+++||+++.. ....++..+.++
T Consensus 153 ~i~l~Gk~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t------~~l~~~~~~ADIVIsAvg~p~~i~~~~vk 221 (286)
T PRK14175 153 DIDLEGKNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRS------KDMASYLKDADVIVSAVGKPGLVTKDVVK 221 (286)
T ss_pred CCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCc------hhHHHHHhhCCEEEECCCCCcccCHHHcC
Confidence 4579999999999999 99999999999999999887752 3689999999999988 555577666554
No 60
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=97.47 E-value=0.00012 Score=62.63 Aligned_cols=54 Identities=22% Similarity=0.270 Sum_probs=41.5
Q ss_pred EEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC--------C-cccChhhhcccCcEEEEe
Q 027226 155 TVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH--------S-QVSCQSSGWHCKQVISIF 208 (226)
Q Consensus 155 tvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~--------~-~~~~l~ell~~sD~v~l~ 208 (226)
+|||||+|.||+.+|+.|+..|.+|++|+++.... . ......+.+..+|++.+.
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~aDlVila 64 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRESTCERAIERGLVDEASTDLSLLKDCDLVILA 64 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCcccccCCHhHhcCCCEEEEc
Confidence 79999999999999999998899999999975321 0 111112457888988887
No 61
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=97.46 E-value=0.00018 Score=61.47 Aligned_cols=58 Identities=21% Similarity=0.181 Sum_probs=45.3
Q ss_pred CCCEEEEEcCChHHHHHHHHHcc--CCCEEE-EEcCCCCCC----------CcccChhhhcccCcEEEEec
Q 027226 152 LGKTVFILGFGNIGVELAKRLRP--FGVKII-ATKRSWASH----------SQVSCQSSGWHCKQVISIFN 209 (226)
Q Consensus 152 ~gktvgIvG~G~IG~~vA~~l~a--fG~~V~-~~~r~~~~~----------~~~~~l~ell~~sD~v~l~~ 209 (226)
...+|||||+|+||+.+++.+.. .++++. .++|++... ....++++++...|+|++..
T Consensus 5 ~~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~~a~~~g~~~~~~~~eell~~~D~Vvi~t 75 (271)
T PRK13302 5 PELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRDPQRHADFIWGLRRPPPVVPLDQLATHADIVVEAA 75 (271)
T ss_pred CeeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCCHHHHHHHHHhcCCCcccCCHHHHhcCCCEEEECC
Confidence 45799999999999999999975 588876 567754321 12467899999999999883
No 62
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=97.45 E-value=0.00012 Score=63.29 Aligned_cols=54 Identities=17% Similarity=0.252 Sum_probs=43.4
Q ss_pred EEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC--------CcccChhhhccc---CcEEEEe
Q 027226 155 TVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH--------SQVSCQSSGWHC---KQVISIF 208 (226)
Q Consensus 155 tvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~--------~~~~~l~ell~~---sD~v~l~ 208 (226)
+|||||+|.+|+.+|+.+...|.+|++|||++... ....+.+++... +|++.+.
T Consensus 2 ~Ig~IGlG~mG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~~s~~~~~~~~~~advVi~~ 66 (299)
T PRK12490 2 KLGLIGLGKMGGNMAERLREDGHEVVGYDVNQEAVDVAGKLGITARHSLEELVSKLEAPRTIWVM 66 (299)
T ss_pred EEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHCCCeecCCHHHHHHhCCCCCEEEEE
Confidence 69999999999999999999999999999975431 124567777765 5787776
No 63
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=97.41 E-value=0.00026 Score=54.80 Aligned_cols=64 Identities=25% Similarity=0.271 Sum_probs=49.3
Q ss_pred ccCCCEEEEEcCChHHHHHHHHHccCC-CEEEEEcCCCCCC--------C-----cccChhhhcccCcEEEEeccCCc
Q 027226 150 TLLGKTVFILGFGNIGVELAKRLRPFG-VKIIATKRSWASH--------S-----QVSCQSSGWHCKQVISIFNEKGF 213 (226)
Q Consensus 150 ~l~gktvgIvG~G~IG~~vA~~l~afG-~~V~~~~r~~~~~--------~-----~~~~l~ell~~sD~v~l~~~~d~ 213 (226)
.+.+++++|+|.|.+|+.+++.+...| .+|..++|+.... . ...++++++..+|++++.-..+.
T Consensus 16 ~~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvi~~~~~~~ 93 (155)
T cd01065 16 ELKGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELGIAIAYLDLEELLAEADLIINTTPVGM 93 (155)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhcccceeecchhhccccCCEEEeCcCCCC
Confidence 466899999999999999999999886 6899999975432 0 23355667888999988844444
No 64
>KOG1370 consensus S-adenosylhomocysteine hydrolase [Coenzyme transport and metabolism]
Probab=97.39 E-value=0.00016 Score=62.04 Aligned_cols=70 Identities=21% Similarity=0.351 Sum_probs=56.8
Q ss_pred ccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC-------CcccChhhhcccCcEEEEe-ccCCccccccc
Q 027226 150 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH-------SQVSCQSSGWHCKQVISIF-NEKGFSSGEYC 219 (226)
Q Consensus 150 ~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~-------~~~~~l~ell~~sD~v~l~-~~~d~i~~~~~ 219 (226)
-+.||.+.|.|||.+|+-+|..|++||++|+...-.|-.. ++...++|..++.|+++-. ...|+|.++-|
T Consensus 211 M~aGKv~Vv~GYGdVGKgCaqaLkg~g~~VivTEiDPI~ALQAaMeG~~V~tm~ea~~e~difVTtTGc~dii~~~H~ 288 (434)
T KOG1370|consen 211 MIAGKVAVVCGYGDVGKGCAQALKGFGARVIVTEIDPICALQAAMEGYEVTTLEEAIREVDIFVTTTGCKDIITGEHF 288 (434)
T ss_pred eecccEEEEeccCccchhHHHHHhhcCcEEEEeccCchHHHHHHhhccEeeeHHHhhhcCCEEEEccCCcchhhHHHH
Confidence 5679999999999999999999999999999876543221 5677899999999988776 56677766544
No 65
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=97.36 E-value=0.00018 Score=62.33 Aligned_cols=54 Identities=17% Similarity=0.255 Sum_probs=42.5
Q ss_pred EEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC--------CcccChhhhccc---CcEEEEe
Q 027226 155 TVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH--------SQVSCQSSGWHC---KQVISIF 208 (226)
Q Consensus 155 tvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~--------~~~~~l~ell~~---sD~v~l~ 208 (226)
+|||||+|.+|+.+|+.|...|.+|.+|||++... ....+.+++... +|++.+.
T Consensus 2 ~Ig~IGlG~MG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~~~~~e~~~~~~~~dvvi~~ 66 (301)
T PRK09599 2 QLGMIGLGRMGGNMARRLLRGGHEVVGYDRNPEAVEALAEEGATGADSLEELVAKLPAPRVVWLM 66 (301)
T ss_pred EEEEEcccHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHCCCeecCCHHHHHhhcCCCCEEEEE
Confidence 79999999999999999999999999999986432 123456677665 5776666
No 66
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.34 E-value=0.00056 Score=59.12 Aligned_cols=65 Identities=12% Similarity=0.194 Sum_probs=53.8
Q ss_pred CCccCCCEEEEEc-CChHHHHHHHHHccCCCEEEEEc-CCCCCCCcccChhhhcccCcEEEEe-ccCCccccccc
Q 027226 148 GETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATK-RSWASHSQVSCQSSGWHCKQVISIF-NEKGFSSGEYC 219 (226)
Q Consensus 148 ~~~l~gktvgIvG-~G~IG~~vA~~l~afG~~V~~~~-r~~~~~~~~~~l~ell~~sD~v~l~-~~~d~i~~~~~ 219 (226)
+.++.||+|+||| .|.+|+.+|.+|..-|++|+.|+ |+. +++++.+.||+++.. ....++...++
T Consensus 153 ~i~~~Gk~V~viGrs~~mG~PmA~~L~~~g~tVtv~~~rT~-------~l~e~~~~ADIVIsavg~~~~v~~~~l 220 (296)
T PRK14188 153 HGDLSGLNAVVIGRSNLVGKPMAQLLLAANATVTIAHSRTR-------DLPAVCRRADILVAAVGRPEMVKGDWI 220 (296)
T ss_pred CCCCCCCEEEEEcCCcchHHHHHHHHHhCCCEEEEECCCCC-------CHHHHHhcCCEEEEecCChhhcchhee
Confidence 3589999999999 99999999999998899999995 542 578999999999887 55555555543
No 67
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=97.33 E-value=0.00043 Score=56.61 Aligned_cols=55 Identities=24% Similarity=0.266 Sum_probs=45.2
Q ss_pred CEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC-----------CcccChhhhcccCcEEEEe
Q 027226 154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH-----------SQVSCQSSGWHCKQVISIF 208 (226)
Q Consensus 154 ktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~-----------~~~~~l~ell~~sD~v~l~ 208 (226)
++++|+|.|+||..+|+++...|.+|+.-+|+.++. ....+.++..+.+|++.|.
T Consensus 2 ~~~~i~GtGniG~alA~~~a~ag~eV~igs~r~~~~~~a~a~~l~~~i~~~~~~dA~~~aDVVvLA 67 (211)
T COG2085 2 MIIAIIGTGNIGSALALRLAKAGHEVIIGSSRGPKALAAAAAALGPLITGGSNEDAAALADVVVLA 67 (211)
T ss_pred cEEEEeccChHHHHHHHHHHhCCCeEEEecCCChhHHHHHHHhhccccccCChHHHHhcCCEEEEe
Confidence 589999999999999999999999998886654432 2345667888899999987
No 68
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=97.32 E-value=0.00013 Score=55.33 Aligned_cols=59 Identities=22% Similarity=0.218 Sum_probs=40.5
Q ss_pred cCCCEEEEEcCChHHHHHHHHHccCCCEEEEE-cCCCCCC---------CcccChhhhcccCcEEEEec
Q 027226 151 LLGKTVFILGFGNIGVELAKRLRPFGVKIIAT-KRSWASH---------SQVSCQSSGWHCKQVISIFN 209 (226)
Q Consensus 151 l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~-~r~~~~~---------~~~~~l~ell~~sD~v~l~~ 209 (226)
-...+|||||.|++|+.+++.|+.-|.+|.++ +|+.... ....++++++..+|++.+.-
T Consensus 8 ~~~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~srs~~sa~~a~~~~~~~~~~~~~~~~~~aDlv~iav 76 (127)
T PF10727_consen 8 AARLKIGIIGAGRVGTALARALARAGHEVVGVYSRSPASAERAAAFIGAGAILDLEEILRDADLVFIAV 76 (127)
T ss_dssp ----EEEEECTSCCCCHHHHHHHHTTSEEEEESSCHH-HHHHHHC--TT-----TTGGGCC-SEEEE-S
T ss_pred CCccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCcccccccccccccccccccccccccCCEEEEEe
Confidence 34579999999999999999999999999886 5553221 23567889999999998863
No 69
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=97.32 E-value=0.00076 Score=57.02 Aligned_cols=37 Identities=38% Similarity=0.525 Sum_probs=34.1
Q ss_pred CCccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcC
Q 027226 148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKR 184 (226)
Q Consensus 148 ~~~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r 184 (226)
+.++.|+||.|-|||++|+.+|+.|..+|++|++++-
T Consensus 33 ~~~l~g~~vaIqGfGnVG~~~a~~L~e~GakvvaVsD 69 (254)
T cd05313 33 NETLKGKRVAISGSGNVAQYAAEKLLELGAKVVTLSD 69 (254)
T ss_pred CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEC
Confidence 4689999999999999999999999999999997755
No 70
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=97.30 E-value=0.00019 Score=64.98 Aligned_cols=59 Identities=22% Similarity=0.308 Sum_probs=48.6
Q ss_pred ccCCCEEEEEcCChHHHHHHHHHccCC-CEEEEEcCCCCCC-----------CcccChhhhcccCcEEEEe
Q 027226 150 TLLGKTVFILGFGNIGVELAKRLRPFG-VKIIATKRSWASH-----------SQVSCQSSGWHCKQVISIF 208 (226)
Q Consensus 150 ~l~gktvgIvG~G~IG~~vA~~l~afG-~~V~~~~r~~~~~-----------~~~~~l~ell~~sD~v~l~ 208 (226)
.+.|++|+|+|.|.||+.+++.|+.+| .+|+.++|+.... ....++.+.+..+|++...
T Consensus 177 ~l~~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la~~~g~~~i~~~~l~~~l~~aDvVi~a 247 (417)
T TIGR01035 177 SLKGKKALLIGAGEMGELVAKHLLRKGVGKILIANRTYERAEDLAKELGGEAVKFEDLEEYLAEADIVISS 247 (417)
T ss_pred CccCCEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCeEeeHHHHHHHHhhCCEEEEC
Confidence 588999999999999999999999999 6899999976432 1123566778899998887
No 71
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=97.29 E-value=0.00049 Score=59.65 Aligned_cols=59 Identities=22% Similarity=0.375 Sum_probs=45.7
Q ss_pred CCCEEEEEcCChHHHHHHHHHccCCC--EEEEEcCCCCCC-----C-----cccChhhhcccCcEEEEecc
Q 027226 152 LGKTVFILGFGNIGVELAKRLRPFGV--KIIATKRSWASH-----S-----QVSCQSSGWHCKQVISIFNE 210 (226)
Q Consensus 152 ~gktvgIvG~G~IG~~vA~~l~afG~--~V~~~~r~~~~~-----~-----~~~~l~ell~~sD~v~l~~~ 210 (226)
..++|+|||+|.||..+|+.++..|. +|++|+|++... . ...++++.+..+|++.+.-.
T Consensus 5 ~~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvViiavp 75 (307)
T PRK07502 5 LFDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELGLGDRVTTSAAEAVKGADLVILCVP 75 (307)
T ss_pred CCcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCCCceecCCHHHHhcCCCEEEECCC
Confidence 34789999999999999999987774 899999975421 0 12356677889999988843
No 72
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.26 E-value=0.00028 Score=61.03 Aligned_cols=37 Identities=24% Similarity=0.383 Sum_probs=34.7
Q ss_pred CCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCC
Q 027226 152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS 188 (226)
Q Consensus 152 ~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~ 188 (226)
.|+.+||+|+|.+|.--.+.+|||||+|+++|++.++
T Consensus 181 pG~~vgI~GlGGLGh~aVq~AKAMG~rV~vis~~~~k 217 (360)
T KOG0023|consen 181 PGKWVGIVGLGGLGHMAVQYAKAMGMRVTVISTSSKK 217 (360)
T ss_pred CCcEEEEecCcccchHHHHHHHHhCcEEEEEeCCchh
Confidence 7999999999999999999999999999999998643
No 73
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=97.23 E-value=0.00041 Score=59.92 Aligned_cols=54 Identities=19% Similarity=0.225 Sum_probs=44.5
Q ss_pred EEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC-------CcccChhhhcccCcEEEEe
Q 027226 155 TVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH-------SQVSCQSSGWHCKQVISIF 208 (226)
Q Consensus 155 tvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~-------~~~~~l~ell~~sD~v~l~ 208 (226)
+|||||+|.+|..+|+.|...|.+|.+|+++++.. ....+..++...+|++.+.
T Consensus 2 ~Ig~IGlG~MG~~ma~~L~~~G~~v~v~~~~~~~~~~~~~g~~~~~s~~~~~~~advVi~~ 62 (292)
T PRK15059 2 KLGFIGLGIMGTPMAINLARAGHQLHVTTIGPVADELLSLGAVSVETARQVTEASDIIFIM 62 (292)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCeEEEEeCCHhHHHHHHcCCeecCCHHHHHhcCCEEEEe
Confidence 69999999999999999999999999999875421 1244566788899998877
No 74
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=97.23 E-value=0.00028 Score=61.00 Aligned_cols=56 Identities=14% Similarity=0.284 Sum_probs=42.6
Q ss_pred EEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC--------CcccChhh---hcccCcEEEEecc
Q 027226 155 TVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH--------SQVSCQSS---GWHCKQVISIFNE 210 (226)
Q Consensus 155 tvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~--------~~~~~l~e---ll~~sD~v~l~~~ 210 (226)
+|||||+|.+|..+|+.|...|.+|.+|+|++... ....++++ .+..+|++.+.-.
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~~~~~dvIi~~vp 68 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQDAVKAMKEDRTTGVANLRELSQRLSAPRVVWVMVP 68 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCcccCCHHHHHhhcCCCCEEEEEcC
Confidence 79999999999999999999999999999985432 11233333 4456788887733
No 75
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.20 E-value=0.0012 Score=56.89 Aligned_cols=67 Identities=12% Similarity=0.112 Sum_probs=55.5
Q ss_pred CCccCCCEEEEEcCCh-HHHHHHHHHccCCCEEEEEcCCCCCCCcccChhhhcccCcEEEEe-ccCCcccccccc
Q 027226 148 GETLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSGWHCKQVISIF-NEKGFSSGEYCS 220 (226)
Q Consensus 148 ~~~l~gktvgIvG~G~-IG~~vA~~l~afG~~V~~~~r~~~~~~~~~~l~ell~~sD~v~l~-~~~d~i~~~~~~ 220 (226)
+.++.||++.|+|.|. .|+.+|..|...|++|+.+.+. ..+|.+.++.+|+++.. ...+++..++++
T Consensus 154 ~i~l~Gk~vvViG~gg~vGkpia~~L~~~gatVtv~~~~------t~~L~~~~~~aDIvI~AtG~~~~v~~~~lk 222 (283)
T PRK14192 154 NIELAGKHAVVVGRSAILGKPMAMMLLNANATVTICHSR------TQNLPELVKQADIIVGAVGKPELIKKDWIK 222 (283)
T ss_pred CCCCCCCEEEEECCcHHHHHHHHHHHHhCCCEEEEEeCC------chhHHHHhccCCEEEEccCCCCcCCHHHcC
Confidence 5689999999999998 9999999999999999988873 33688888999999988 345566655554
No 76
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=97.17 E-value=0.0012 Score=54.73 Aligned_cols=37 Identities=41% Similarity=0.601 Sum_probs=33.0
Q ss_pred CccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCC
Q 027226 149 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRS 185 (226)
Q Consensus 149 ~~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~ 185 (226)
.++.|+||.|.|||++|+.+|+.|...|.+|++++-+
T Consensus 19 ~~l~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~ 55 (217)
T cd05211 19 DSLEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDP 55 (217)
T ss_pred CCcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcC
Confidence 5789999999999999999999999999987776543
No 77
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=97.16 E-value=0.00067 Score=58.27 Aligned_cols=55 Identities=15% Similarity=0.225 Sum_probs=47.1
Q ss_pred CEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC---------CcccChhhhcccCcEEEEe
Q 027226 154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH---------SQVSCQSSGWHCKQVISIF 208 (226)
Q Consensus 154 ktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~---------~~~~~l~ell~~sD~v~l~ 208 (226)
.+||+||+|..|..+|++|..-|..|.+|+|++... ....+..|+.+.+|+|...
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~aG~~v~v~~r~~~ka~~~~~~~Ga~~a~s~~eaa~~aDvVitm 64 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKAGHEVTVYNRTPEKAAELLAAAGATVAASPAEAAAEADVVITM 64 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHCCCEEEEEeCChhhhhHHHHHcCCcccCCHHHHHHhCCEEEEe
Confidence 479999999999999999999999999999997762 1244556899999998876
No 78
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=97.15 E-value=0.00079 Score=57.81 Aligned_cols=60 Identities=30% Similarity=0.384 Sum_probs=51.0
Q ss_pred CccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC--------CcccChhhhcccCcEEEEe
Q 027226 149 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH--------SQVSCQSSGWHCKQVISIF 208 (226)
Q Consensus 149 ~~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~--------~~~~~l~ell~~sD~v~l~ 208 (226)
.-|.||||+|||||+-|.+=|.-|+--|.+|++=-|....+ .+..+.+|+.+.+|++.++
T Consensus 14 ~~LkgK~iaIIGYGsQG~ahalNLRDSGlnViiGlr~g~~s~~kA~~dGf~V~~v~ea~k~ADvim~L 81 (338)
T COG0059 14 DLLKGKKVAIIGYGSQGHAQALNLRDSGLNVIIGLRKGSSSWKKAKEDGFKVYTVEEAAKRADVVMIL 81 (338)
T ss_pred hHhcCCeEEEEecChHHHHHHhhhhhcCCcEEEEecCCchhHHHHHhcCCEeecHHHHhhcCCEEEEe
Confidence 47999999999999999999999999999977655544443 4567789999999999998
No 79
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=97.15 E-value=0.00046 Score=59.50 Aligned_cols=34 Identities=24% Similarity=0.312 Sum_probs=31.7
Q ss_pred CEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCC
Q 027226 154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA 187 (226)
Q Consensus 154 ktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~ 187 (226)
++|||||.|.+|..+|..+...|++|+.||++..
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~ 38 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPA 38 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence 6899999999999999999999999999999753
No 80
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.14 E-value=0.0011 Score=56.96 Aligned_cols=68 Identities=15% Similarity=0.195 Sum_probs=56.4
Q ss_pred CCccCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCCCCCCcccChhhhcccCcEEEEe-ccCCccccccccc
Q 027226 148 GETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSGWHCKQVISIF-NEKGFSSGEYCSR 221 (226)
Q Consensus 148 ~~~l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~~~~~~~~~l~ell~~sD~v~l~-~~~d~i~~~~~~~ 221 (226)
+.++.||+++|||. |-+|+.+|.+|..-|++|+.|... ..++.+..++||+++.. ....++..++++.
T Consensus 153 ~i~l~Gk~v~vIG~S~ivG~Pla~lL~~~gatVtv~~s~------t~~l~~~~~~ADIVI~avg~~~~v~~~~ik~ 222 (284)
T PRK14179 153 NVELEGKHAVVIGRSNIVGKPMAQLLLDKNATVTLTHSR------TRNLAEVARKADILVVAIGRGHFVTKEFVKE 222 (284)
T ss_pred CCCCCCCEEEEECCCCcCcHHHHHHHHHCCCEEEEECCC------CCCHHHHHhhCCEEEEecCccccCCHHHccC
Confidence 56899999999999 999999999999999999998322 23788999999999887 6677777666543
No 81
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=97.11 E-value=0.00045 Score=60.45 Aligned_cols=34 Identities=26% Similarity=0.327 Sum_probs=31.9
Q ss_pred CEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCC
Q 027226 154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA 187 (226)
Q Consensus 154 ktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~ 187 (226)
++|||||.|.||..+|..+...|++|+.||+++.
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~ 41 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPG 41 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 6899999999999999999999999999999754
No 82
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=97.10 E-value=0.00043 Score=59.51 Aligned_cols=34 Identities=15% Similarity=0.220 Sum_probs=31.3
Q ss_pred CEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCC
Q 027226 154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA 187 (226)
Q Consensus 154 ktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~ 187 (226)
++|+|||.|.+|..+|..+...|.+|+.||+++.
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~ 35 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQE 35 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCCcEEEEeCCHH
Confidence 5899999999999999999988999999999743
No 83
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=97.09 E-value=0.00094 Score=58.82 Aligned_cols=56 Identities=25% Similarity=0.177 Sum_probs=47.9
Q ss_pred CCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCCC-------------cccChhhhcccCcEEEEe
Q 027226 153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHS-------------QVSCQSSGWHCKQVISIF 208 (226)
Q Consensus 153 gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~~-------------~~~~l~ell~~sD~v~l~ 208 (226)
++||||||=|..|+-++.-++.+|.+|+..++.+.... +...+.++...||+++.=
T Consensus 1 ~~tvgIlGGGQLgrMm~~aa~~lG~~v~vLdp~~~~PA~~va~~~i~~~~dD~~al~ela~~~DViT~E 69 (375)
T COG0026 1 MKTVGILGGGQLGRMMALAAARLGIKVIVLDPDADAPAAQVADRVIVAAYDDPEALRELAAKCDVITYE 69 (375)
T ss_pred CCeEEEEcCcHHHHHHHHHHHhcCCEEEEecCCCCCchhhcccceeecCCCCHHHHHHHHhhCCEEEEe
Confidence 47999999999999999999999999999999876651 134688899999999864
No 84
>PLN02858 fructose-bisphosphate aldolase
Probab=97.09 E-value=0.00046 Score=70.86 Aligned_cols=56 Identities=14% Similarity=0.122 Sum_probs=48.0
Q ss_pred CCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC--------CcccChhhhcccCcEEEEe
Q 027226 153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH--------SQVSCQSSGWHCKQVISIF 208 (226)
Q Consensus 153 gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~--------~~~~~l~ell~~sD~v~l~ 208 (226)
.++||+||+|.+|..+|+.|...|++|++|||++... ....+..++...+|++.+.
T Consensus 324 ~~~IGfIGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~Ga~~~~s~~e~~~~aDvVi~~ 387 (1378)
T PLN02858 324 VKRIGFIGLGAMGFGMASHLLKSNFSVCGYDVYKPTLVRFENAGGLAGNSPAEVAKDVDVLVIM 387 (1378)
T ss_pred CCeEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEe
Confidence 4899999999999999999999999999999986432 1245677899999999987
No 85
>PLN02688 pyrroline-5-carboxylate reductase
Probab=97.08 E-value=0.00058 Score=57.80 Aligned_cols=54 Identities=20% Similarity=0.253 Sum_probs=41.7
Q ss_pred EEEEEcCChHHHHHHHHHccCCC----EEEEE-cCCCCCC-------C-cccChhhhcccCcEEEEe
Q 027226 155 TVFILGFGNIGVELAKRLRPFGV----KIIAT-KRSWASH-------S-QVSCQSSGWHCKQVISIF 208 (226)
Q Consensus 155 tvgIvG~G~IG~~vA~~l~afG~----~V~~~-~r~~~~~-------~-~~~~l~ell~~sD~v~l~ 208 (226)
+|||||+|.+|.++|+.|..-|. +|++| +|++... . ...+..++...+|++.+.
T Consensus 2 kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~~~~g~~~~~~~~e~~~~aDvVil~ 68 (266)
T PLN02688 2 RVGFIGAGKMAEAIARGLVASGVVPPSRISTADDSNPARRDVFQSLGVKTAASNTEVVKSSDVIILA 68 (266)
T ss_pred eEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHHHHHHcCCEEeCChHHHHhcCCEEEEE
Confidence 69999999999999999987777 88888 7764331 1 133556677888988776
No 86
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=97.07 E-value=0.00077 Score=55.58 Aligned_cols=54 Identities=20% Similarity=0.113 Sum_probs=42.6
Q ss_pred EEEEEcCChHHHHHHHHHc--cCCCE-EEEEcCCCCCC---------CcccChhhhcccCcEEEEe
Q 027226 155 TVFILGFGNIGVELAKRLR--PFGVK-IIATKRSWASH---------SQVSCQSSGWHCKQVISIF 208 (226)
Q Consensus 155 tvgIvG~G~IG~~vA~~l~--afG~~-V~~~~r~~~~~---------~~~~~l~ell~~sD~v~l~ 208 (226)
+|||||+|.||+.+.+.++ ..+++ |..||++..+. ....++|+++++.|+++-.
T Consensus 2 ~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~~~~~~~~~~s~ide~~~~~DlvVEa 67 (255)
T COG1712 2 KVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEEKAKELEASVGRRCVSDIDELIAEVDLVVEA 67 (255)
T ss_pred eEEEEeccHHHHHHHHHHhcCCcceeEEEEecCCHHHHHHHHhhcCCCccccHHHHhhccceeeee
Confidence 7999999999999999998 35665 77788875543 1246699999999988765
No 87
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.06 E-value=0.0015 Score=56.02 Aligned_cols=68 Identities=18% Similarity=0.282 Sum_probs=57.6
Q ss_pred CCccCCCEEEEEcCCh-HHHHHHHHHccCCCEEEEEcCCCCCCCcccChhhhcccCcEEEEe-ccCCccccccccc
Q 027226 148 GETLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSGWHCKQVISIF-NEKGFSSGEYCSR 221 (226)
Q Consensus 148 ~~~l~gktvgIvG~G~-IG~~vA~~l~afG~~V~~~~r~~~~~~~~~~l~ell~~sD~v~l~-~~~d~i~~~~~~~ 221 (226)
+.++.||++.|+|.|. +|+-+|.+|...|++|+.+.++. .+|.+..+++|+++.. ....++..++++.
T Consensus 154 ~i~l~Gk~vvViGrs~iVG~Pla~lL~~~~atVtv~hs~T------~~l~~~~~~ADIvi~avG~p~~v~~~~vk~ 223 (285)
T PRK10792 154 GIDTYGLNAVVVGASNIVGRPMSLELLLAGCTVTVCHRFT------KNLRHHVRNADLLVVAVGKPGFIPGEWIKP 223 (285)
T ss_pred CCCCCCCEEEEECCCcccHHHHHHHHHHCCCeEEEEECCC------CCHHHHHhhCCEEEEcCCCcccccHHHcCC
Confidence 4589999999999999 99999999999999999987652 3789999999999888 5666777766653
No 88
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=97.02 E-value=0.0027 Score=49.99 Aligned_cols=68 Identities=18% Similarity=0.199 Sum_probs=50.4
Q ss_pred CCccCCCEEEEEcCCh-HHHHHHHHHccCCCEEEEEcCCCCCCCcccChhhhcccCcEEEEe-ccCCccccccccc
Q 027226 148 GETLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSGWHCKQVISIF-NEKGFSSGEYCSR 221 (226)
Q Consensus 148 ~~~l~gktvgIvG~G~-IG~~vA~~l~afG~~V~~~~r~~~~~~~~~~l~ell~~sD~v~l~-~~~d~i~~~~~~~ 221 (226)
+.++.||++.|||-+. +|+.++.+|..-|+.|.....+. .++++.+++||+++.. ....+|-.+.++.
T Consensus 31 ~~~l~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T------~~l~~~~~~ADIVVsa~G~~~~i~~~~ik~ 100 (160)
T PF02882_consen 31 GIDLEGKKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKT------KNLQEITRRADIVVSAVGKPNLIKADWIKP 100 (160)
T ss_dssp T-STTT-EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTS------SSHHHHHTTSSEEEE-SSSTT-B-GGGS-T
T ss_pred CCCCCCCEEEEECCcCCCChHHHHHHHhCCCeEEeccCCC------CcccceeeeccEEeeeeccccccccccccC
Confidence 4579999999999996 99999999999999999876653 3789999999999988 6677777666543
No 89
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.01 E-value=0.00077 Score=57.11 Aligned_cols=55 Identities=18% Similarity=0.181 Sum_probs=42.7
Q ss_pred CEEEEEcCChHHHHHHHHHccCC---CEEEEEcCCCCCC------C---cccChhhhcccCcEEEEe
Q 027226 154 KTVFILGFGNIGVELAKRLRPFG---VKIIATKRSWASH------S---QVSCQSSGWHCKQVISIF 208 (226)
Q Consensus 154 ktvgIvG~G~IG~~vA~~l~afG---~~V~~~~r~~~~~------~---~~~~l~ell~~sD~v~l~ 208 (226)
.+|+|||+|.||+.+|+.+..-| .+|.+++|+.... . -..+.++++..+|++.+.
T Consensus 3 m~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~~~~~~~~~~~g~~~~~~~~~~~~~advVil~ 69 (267)
T PRK11880 3 KKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSPEKRAALAEEYGVRAATDNQEAAQEADVVVLA 69 (267)
T ss_pred CEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCHHHHHHHHHhcCCeecCChHHHHhcCCEEEEE
Confidence 47999999999999999998777 6899999975321 1 123456677888988776
No 90
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=97.00 E-value=0.00061 Score=58.38 Aligned_cols=40 Identities=28% Similarity=0.397 Sum_probs=36.0
Q ss_pred CccCCCEEEEEcCChHHHHHHHHHccCC-CEEEEEcCCCCC
Q 027226 149 ETLLGKTVFILGFGNIGVELAKRLRPFG-VKIIATKRSWAS 188 (226)
Q Consensus 149 ~~l~gktvgIvG~G~IG~~vA~~l~afG-~~V~~~~r~~~~ 188 (226)
..+.++++.|+|.|.+|++++..|..+| .+|+.++|+...
T Consensus 119 ~~~~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~~~ 159 (278)
T PRK00258 119 VDLKGKRILILGAGGAARAVILPLLDLGVAEITIVNRTVER 159 (278)
T ss_pred CCCCCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCHHH
Confidence 4688999999999999999999999999 689999998543
No 91
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.00 E-value=0.00078 Score=58.92 Aligned_cols=55 Identities=18% Similarity=0.083 Sum_probs=43.8
Q ss_pred CEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC----------------------CcccChhhhcccCcEEEEe
Q 027226 154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH----------------------SQVSCQSSGWHCKQVISIF 208 (226)
Q Consensus 154 ktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~----------------------~~~~~l~ell~~sD~v~l~ 208 (226)
.+|+|||.|.+|..+|..|..-|.+|..|+|++... ....++++.+..+|++.+.
T Consensus 5 m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~aD~Vi~~ 81 (328)
T PRK14618 5 MRVAVLGAGAWGTALAVLAASKGVPVRLWARRPEFAAALAAERENREYLPGVALPAELYPTADPEEALAGADFAVVA 81 (328)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHHHcCCCEEEEE
Confidence 479999999999999999998999999999974321 0123566777888888777
No 92
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=96.97 E-value=0.00062 Score=59.31 Aligned_cols=61 Identities=23% Similarity=0.296 Sum_probs=47.1
Q ss_pred ccCCCEEEEEcCChHHHHHHHHHccCC-CEEEEEcCCCCCC------C-----cccChhhhcccCcEEEEecc
Q 027226 150 TLLGKTVFILGFGNIGVELAKRLRPFG-VKIIATKRSWASH------S-----QVSCQSSGWHCKQVISIFNE 210 (226)
Q Consensus 150 ~l~gktvgIvG~G~IG~~vA~~l~afG-~~V~~~~r~~~~~------~-----~~~~l~ell~~sD~v~l~~~ 210 (226)
.+.+++|+|+|.|.||+.+++.++..| .+|+.++|++... . ...++.+.+..+|++.....
T Consensus 175 ~l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVi~at~ 247 (311)
T cd05213 175 NLKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKELGGNAVPLDELLELLNEADVVISATG 247 (311)
T ss_pred CccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcCCeEEeHHHHHHHHhcCCEEEECCC
Confidence 378999999999999999999999877 4799999975431 1 12345677788898888733
No 93
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=96.96 E-value=0.0012 Score=56.47 Aligned_cols=56 Identities=14% Similarity=0.115 Sum_probs=43.0
Q ss_pred CCEEEEEcCChHHHHHHHHHccCC----CEEEEEcCCCCCC-------C---cccChhhhcccCcEEEEe
Q 027226 153 GKTVFILGFGNIGVELAKRLRPFG----VKIIATKRSWASH-------S---QVSCQSSGWHCKQVISIF 208 (226)
Q Consensus 153 gktvgIvG~G~IG~~vA~~l~afG----~~V~~~~r~~~~~-------~---~~~~l~ell~~sD~v~l~ 208 (226)
..+|||||+|++|+++|+.+..-| .+|++++|+.... . ...+..++...+|++.+.
T Consensus 3 ~mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~r~~~~~~~~l~~~~g~~~~~~~~e~~~~aDvVila 72 (279)
T PRK07679 3 IQNISFLGAGSIAEAIIGGLLHANVVKGEQITVSNRSNETRLQELHQKYGVKGTHNKKELLTDANILFLA 72 (279)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCCHHHHHHHHHhcCceEeCCHHHHHhcCCEEEEE
Confidence 468999999999999999998766 6899999865321 1 133455677889988877
No 94
>PRK08507 prephenate dehydrogenase; Validated
Probab=96.96 E-value=0.00099 Score=56.86 Aligned_cols=53 Identities=19% Similarity=0.160 Sum_probs=40.1
Q ss_pred EEEEEcCChHHHHHHHHHccCC--CEEEEEcCCCCCC--------C-cccChhhhcccCcEEEEe
Q 027226 155 TVFILGFGNIGVELAKRLRPFG--VKIIATKRSWASH--------S-QVSCQSSGWHCKQVISIF 208 (226)
Q Consensus 155 tvgIvG~G~IG~~vA~~l~afG--~~V~~~~r~~~~~--------~-~~~~l~ell~~sD~v~l~ 208 (226)
+|+|||+|.+|+.+|+.|+.-| .+|++|+|++... . ...+.+++. .+|++.+.
T Consensus 2 ~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~~g~~~~~~~~~~~~-~aD~Vila 65 (275)
T PRK08507 2 KIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKALELGLVDEIVSFEELK-KCDVIFLA 65 (275)
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHCCCCcccCCHHHHh-cCCEEEEe
Confidence 7999999999999999998666 4899999975321 0 123455654 49998887
No 95
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=96.96 E-value=0.00076 Score=61.25 Aligned_cols=59 Identities=25% Similarity=0.347 Sum_probs=47.2
Q ss_pred ccCCCEEEEEcCChHHHHHHHHHccCCC-EEEEEcCCCCCC------C-----cccChhhhcccCcEEEEe
Q 027226 150 TLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASH------S-----QVSCQSSGWHCKQVISIF 208 (226)
Q Consensus 150 ~l~gktvgIvG~G~IG~~vA~~l~afG~-~V~~~~r~~~~~------~-----~~~~l~ell~~sD~v~l~ 208 (226)
.+.|++|+|+|.|.||+.+++.|+..|+ +|+.++|++... . ...++.+.+..+|+++..
T Consensus 179 ~~~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVI~a 249 (423)
T PRK00045 179 DLSGKKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAEELAEEFGGEAIPLDELPEALAEADIVISS 249 (423)
T ss_pred CccCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCCcEeeHHHHHHHhccCCEEEEC
Confidence 4789999999999999999999999998 799999975432 1 123345667888888877
No 96
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=96.95 E-value=0.0017 Score=45.47 Aligned_cols=36 Identities=42% Similarity=0.642 Sum_probs=32.9
Q ss_pred CccCCCEEEEEcCChHHHHHHHHHccC-CCEEEEEcC
Q 027226 149 ETLLGKTVFILGFGNIGVELAKRLRPF-GVKIIATKR 184 (226)
Q Consensus 149 ~~l~gktvgIvG~G~IG~~vA~~l~af-G~~V~~~~r 184 (226)
..+.+++++|+|.|.+|+.++..+..+ +.+|..|+|
T Consensus 19 ~~~~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r 55 (86)
T cd05191 19 KSLKGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR 55 (86)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 568899999999999999999999988 678999988
No 97
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=96.94 E-value=0.0014 Score=63.55 Aligned_cols=55 Identities=27% Similarity=0.313 Sum_probs=44.8
Q ss_pred CEEEEEcCChHHHHHHHHHccCC--CEEEEEcCCCCCC-------C---cccChhhhcccCcEEEEe
Q 027226 154 KTVFILGFGNIGVELAKRLRPFG--VKIIATKRSWASH-------S---QVSCQSSGWHCKQVISIF 208 (226)
Q Consensus 154 ktvgIvG~G~IG~~vA~~l~afG--~~V~~~~r~~~~~-------~---~~~~l~ell~~sD~v~l~ 208 (226)
++|||||+|.+|.++|+.++..| .+|++|+++.... . ...++++.+..+|++.+.
T Consensus 4 ~~I~IIG~G~mG~ala~~l~~~G~~~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvVila 70 (735)
T PRK14806 4 GRVVVIGLGLIGGSFAKALRERGLAREVVAVDRRAKSLELAVSLGVIDRGEEDLAEAVSGADVIVLA 70 (735)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCCEEEEEECChhHHHHHHHCCCCCcccCCHHHHhcCCCEEEEC
Confidence 78999999999999999999888 5899999975431 1 234567778899999887
No 98
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=96.94 E-value=0.0014 Score=56.88 Aligned_cols=33 Identities=24% Similarity=0.182 Sum_probs=31.0
Q ss_pred CEEEEEcCChHHHHHHHHHccCCCEEEEEcCCC
Q 027226 154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSW 186 (226)
Q Consensus 154 ktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~ 186 (226)
++|+|||.|.+|..+|..+...|.+|++||+++
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~ 35 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAGHEVRLWDADP 35 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCCCeeEEEeCCH
Confidence 479999999999999999999999999999975
No 99
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.93 E-value=0.0025 Score=54.75 Aligned_cols=68 Identities=15% Similarity=0.136 Sum_probs=56.3
Q ss_pred CCccCCCEEEEEcCCh-HHHHHHHHHccCCCEEEEEcCCCCCCCcccChhhhcccCcEEEEe-ccCCccccccccc
Q 027226 148 GETLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSGWHCKQVISIF-NEKGFSSGEYCSR 221 (226)
Q Consensus 148 ~~~l~gktvgIvG~G~-IG~~vA~~l~afG~~V~~~~r~~~~~~~~~~l~ell~~sD~v~l~-~~~d~i~~~~~~~ 221 (226)
+.++.||++.|+|.|. +|+-+|.+|...|++|..+.... .+|.+..+++|+++.. ....+|..++++.
T Consensus 159 ~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVtv~hs~T------~~l~~~~~~ADIvv~AvG~p~~i~~~~vk~ 228 (287)
T PRK14176 159 GVDIEGKNAVIVGHSNVVGKPMAAMLLNRNATVSVCHVFT------DDLKKYTLDADILVVATGVKHLIKADMVKE 228 (287)
T ss_pred CCCCCCCEEEEECCCcccHHHHHHHHHHCCCEEEEEeccC------CCHHHHHhhCCEEEEccCCccccCHHHcCC
Confidence 4689999999999999 99999999999999999887542 3789999999999875 5666666665543
No 100
>PRK14031 glutamate dehydrogenase; Provisional
Probab=96.90 E-value=0.0015 Score=59.36 Aligned_cols=38 Identities=29% Similarity=0.489 Sum_probs=34.9
Q ss_pred CCccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCC
Q 027226 148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRS 185 (226)
Q Consensus 148 ~~~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~ 185 (226)
+.+|.|+||.|.|+|++|+..|+.|..+|++|++++.+
T Consensus 223 g~~l~g~rVaVQGfGNVG~~aA~~L~e~GAkVVaVSD~ 260 (444)
T PRK14031 223 GTDLKGKVCLVSGSGNVAQYTAEKVLELGGKVVTMSDS 260 (444)
T ss_pred CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECC
Confidence 45799999999999999999999999999999997663
No 101
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=96.90 E-value=0.0011 Score=59.96 Aligned_cols=35 Identities=20% Similarity=0.357 Sum_probs=32.2
Q ss_pred CEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCC
Q 027226 154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS 188 (226)
Q Consensus 154 ktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~ 188 (226)
++|+|||+|.+|..+|..|+.-|.+|++||+++..
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~~ 38 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQHA 38 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHHH
Confidence 68999999999999999999999999999997543
No 102
>PRK08655 prephenate dehydrogenase; Provisional
Probab=96.89 E-value=0.0014 Score=59.83 Aligned_cols=54 Identities=20% Similarity=0.238 Sum_probs=44.5
Q ss_pred EEEEEc-CChHHHHHHHHHccCCCEEEEEcCCCCCC------Cc---ccChhhhcccCcEEEEe
Q 027226 155 TVFILG-FGNIGVELAKRLRPFGVKIIATKRSWASH------SQ---VSCQSSGWHCKQVISIF 208 (226)
Q Consensus 155 tvgIvG-~G~IG~~vA~~l~afG~~V~~~~r~~~~~------~~---~~~l~ell~~sD~v~l~ 208 (226)
+|+|+| +|.||+.+|+.|+..|.+|++|+|++... .+ ..++++.+..+|++.+.
T Consensus 2 kI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~~a~~~gv~~~~~~~e~~~~aDvVIla 65 (437)
T PRK08655 2 KISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPKKGKEVAKELGVEYANDNIDAAKDADIVIIS 65 (437)
T ss_pred EEEEEecCCHHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHcCCeeccCHHHHhccCCEEEEe
Confidence 799997 99999999999999999999999975441 11 23566788899999887
No 103
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=96.89 E-value=0.00086 Score=48.77 Aligned_cols=60 Identities=17% Similarity=0.155 Sum_probs=44.2
Q ss_pred ccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCC--CC---CcccChhhhcccCcEEEEec
Q 027226 150 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA--SH---SQVSCQSSGWHCKQVISIFN 209 (226)
Q Consensus 150 ~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~--~~---~~~~~l~ell~~sD~v~l~~ 209 (226)
.++|++|.|+|.|.+|.+-++.|...|++|+.+++... +. .....+++.+..+|++....
T Consensus 4 ~l~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~~~~~~~i~~~~~~~~~~l~~~~lV~~at 68 (103)
T PF13241_consen 4 DLKGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEIEFSEGLIQLIRREFEEDLDGADLVFAAT 68 (103)
T ss_dssp --TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSEHHHHTSCEEEESS-GGGCTTESEEEE-S
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCchhhhhhHHHHHhhhHHHHHhhheEEEecC
Confidence 58899999999999999999999999999999999841 11 12334556677888777663
No 104
>PRK09414 glutamate dehydrogenase; Provisional
Probab=96.87 E-value=0.0016 Score=59.38 Aligned_cols=37 Identities=24% Similarity=0.562 Sum_probs=34.0
Q ss_pred CCccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcC
Q 027226 148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKR 184 (226)
Q Consensus 148 ~~~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r 184 (226)
+.++.|+||.|.|||++|+.+|+.|..+|++|++++-
T Consensus 227 ~~~l~g~rVaIqGfGnVG~~~A~~L~~~GakVVavsD 263 (445)
T PRK09414 227 GDSFEGKRVVVSGSGNVAIYAIEKAQQLGAKVVTCSD 263 (445)
T ss_pred CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEc
Confidence 3579999999999999999999999999999999833
No 105
>PLN02477 glutamate dehydrogenase
Probab=96.86 E-value=0.003 Score=57.06 Aligned_cols=38 Identities=37% Similarity=0.585 Sum_probs=34.3
Q ss_pred CCccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCC
Q 027226 148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRS 185 (226)
Q Consensus 148 ~~~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~ 185 (226)
+.++.|+||.|.|||++|+.+|+.|...|++|++++-+
T Consensus 201 g~~l~g~~VaIqGfGnVG~~~A~~L~e~GakVVaVsD~ 238 (410)
T PLN02477 201 GKSIAGQTFVIQGFGNVGSWAAQLIHEKGGKIVAVSDI 238 (410)
T ss_pred CCCccCCEEEEECCCHHHHHHHHHHHHcCCEEEEEECC
Confidence 45899999999999999999999999999999976543
No 106
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=96.86 E-value=0.0011 Score=56.73 Aligned_cols=55 Identities=13% Similarity=0.231 Sum_probs=41.6
Q ss_pred CEEEEEcCChHHHHHHHHHccCCC----EEEEEcCCCCCC------C---cccChhhhcccCcEEEEe
Q 027226 154 KTVFILGFGNIGVELAKRLRPFGV----KIIATKRSWASH------S---QVSCQSSGWHCKQVISIF 208 (226)
Q Consensus 154 ktvgIvG~G~IG~~vA~~l~afG~----~V~~~~r~~~~~------~---~~~~l~ell~~sD~v~l~ 208 (226)
.+|||||+|++|+++++.+..-|. +|++++|+.... . ...+..+++..+|++.+.
T Consensus 3 ~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~~g~~~~~~~~e~~~~aDiIiLa 70 (272)
T PRK12491 3 KQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDKYGITITTNNNEVANSADILILS 70 (272)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHhcCcEEeCCcHHHHhhCCEEEEE
Confidence 579999999999999999976553 699999865431 1 123455677888988776
No 107
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=96.83 E-value=0.0021 Score=57.25 Aligned_cols=55 Identities=29% Similarity=0.273 Sum_probs=44.8
Q ss_pred CCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC----------C---cccChhhhcccCcEEEE
Q 027226 153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH----------S---QVSCQSSGWHCKQVISI 207 (226)
Q Consensus 153 gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~----------~---~~~~l~ell~~sD~v~l 207 (226)
.+||||||-|.+|+.++..++.+|++|+.+++.+... . +.+.+.++...+|+++.
T Consensus 2 ~~~igilG~Gql~~ml~~aa~~lG~~v~~~d~~~~~pa~~~ad~~~~~~~~D~~~l~~~a~~~dvit~ 69 (372)
T PRK06019 2 MKTIGIIGGGQLGRMLALAAAPLGYKVIVLDPDPDSPAAQVADEVIVADYDDVAALRELAEQCDVITY 69 (372)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCCchhHhCceEEecCCCCHHHHHHHHhcCCEEEe
Confidence 4799999999999999999999999999999976543 1 12346678888998764
No 108
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=96.83 E-value=0.002 Score=53.05 Aligned_cols=81 Identities=16% Similarity=0.110 Sum_probs=56.3
Q ss_pred CchhHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCCCCCccCCCEEEEEcCChHHHHHHHH--HccCCCEEEEE-cCCCCC
Q 027226 112 NAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKR--LRPFGVKIIAT-KRSWAS 188 (226)
Q Consensus 112 ~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~gktvgIvG~G~IG~~vA~~--l~afG~~V~~~-~r~~~~ 188 (226)
++.+.++|.+..++...|++.. |. ..++++|+|.|.+|+.+++. ....|+++.++ |+.+..
T Consensus 59 ~G~~~~gy~v~~l~~~~~~~l~---------~~-------~~~rV~IIGaG~iG~~l~~~~~~~~~g~~ivgv~D~d~~~ 122 (213)
T PRK05472 59 FGKRGVGYNVEELLEFIEKILG---------LD-------RTWNVALVGAGNLGRALLNYNGFEKRGFKIVAAFDVDPEK 122 (213)
T ss_pred cCCCCCCeeHHHHHHHHHHHhC---------CC-------CCcEEEEECCCHHHHHHHHhhhcccCCcEEEEEEECChhh
Confidence 3455677999999988888762 11 34689999999999999986 34789998874 554322
Q ss_pred C---------CcccChhhhccc--CcEEEEe
Q 027226 189 H---------SQVSCQSSGWHC--KQVISIF 208 (226)
Q Consensus 189 ~---------~~~~~l~ell~~--sD~v~l~ 208 (226)
. ....++++++.. .|.+.+.
T Consensus 123 ~~~~i~g~~v~~~~~l~~li~~~~iD~ViIa 153 (213)
T PRK05472 123 IGTKIGGIPVYHIDELEEVVKENDIEIGILT 153 (213)
T ss_pred cCCEeCCeEEcCHHHHHHHHHHCCCCEEEEe
Confidence 1 123456777754 7777766
No 109
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=96.81 E-value=0.0016 Score=60.42 Aligned_cols=34 Identities=21% Similarity=0.164 Sum_probs=31.4
Q ss_pred CEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCC
Q 027226 154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA 187 (226)
Q Consensus 154 ktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~ 187 (226)
++|||||.|.+|..+|..+..-|.+|+.||+++.
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~~ 38 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLAGIDVAVFDPHPE 38 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 5899999999999999999988999999999754
No 110
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.80 E-value=0.0016 Score=56.39 Aligned_cols=33 Identities=18% Similarity=0.344 Sum_probs=30.9
Q ss_pred CEEEEEcCChHHHHHHHHHccCCCEEEEEcCCC
Q 027226 154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSW 186 (226)
Q Consensus 154 ktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~ 186 (226)
++|+|||.|.+|..+|..+..-|.+|+.|+++.
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~ 37 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGLQVVLIDVME 37 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence 689999999999999999999999999999865
No 111
>PRK14982 acyl-ACP reductase; Provisional
Probab=96.76 E-value=0.0024 Score=56.24 Aligned_cols=76 Identities=20% Similarity=0.290 Sum_probs=54.3
Q ss_pred CCccCCCEEEEEcC-ChHHHHHHHHHc-cCCC-EEEEEcCCCCCC---------CcccChhhhcccCcEEEEecc--CCc
Q 027226 148 GETLLGKTVFILGF-GNIGVELAKRLR-PFGV-KIIATKRSWASH---------SQVSCQSSGWHCKQVISIFNE--KGF 213 (226)
Q Consensus 148 ~~~l~gktvgIvG~-G~IG~~vA~~l~-afG~-~V~~~~r~~~~~---------~~~~~l~ell~~sD~v~l~~~--~d~ 213 (226)
+..+++++|.|+|. |.||+.+++.|. ..|. +++.++|+.... ....++++.+..+|++..... ..+
T Consensus 150 g~~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~La~el~~~~i~~l~~~l~~aDiVv~~ts~~~~~ 229 (340)
T PRK14982 150 GIDLSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQELQAELGGGKILSLEEALPEADIVVWVASMPKGV 229 (340)
T ss_pred ccCcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHHHHhccccHHhHHHHHccCCEEEECCcCCcCC
Confidence 45799999999998 899999999996 5675 899999864332 123356788999998876632 232
Q ss_pred -cccccccccc
Q 027226 214 -SSGEYCSRRS 223 (226)
Q Consensus 214 -i~~~~~~~~~ 223 (226)
++.+...+|.
T Consensus 230 ~I~~~~l~~~~ 240 (340)
T PRK14982 230 EIDPETLKKPC 240 (340)
T ss_pred cCCHHHhCCCe
Confidence 5555555443
No 112
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=96.76 E-value=0.003 Score=55.22 Aligned_cols=55 Identities=18% Similarity=0.292 Sum_probs=42.5
Q ss_pred CEEEEEcCChHHHHHHHHHccC-CCEEEE-EcCCCCCC-------CcccChhhhcccCcEEEEe
Q 027226 154 KTVFILGFGNIGVELAKRLRPF-GVKIIA-TKRSWASH-------SQVSCQSSGWHCKQVISIF 208 (226)
Q Consensus 154 ktvgIvG~G~IG~~vA~~l~af-G~~V~~-~~r~~~~~-------~~~~~l~ell~~sD~v~l~ 208 (226)
-+|||+|+|+||+.+++.+... ++++.+ ++++.... +...+.++++...|++.+.
T Consensus 4 IRVgIVG~GnIGr~~a~al~~~pd~ELVgV~dr~~~~~~~~~~~v~~~~d~~e~l~~iDVViIc 67 (324)
T TIGR01921 4 IRAAIVGYGNLGRSVEKAIQQQPDMELVGVFSRRGAETLDTETPVYAVADDEKHLDDVDVLILC 67 (324)
T ss_pred cEEEEEeecHHHHHHHHHHHhCCCcEEEEEEcCCcHHHHhhcCCccccCCHHHhccCCCEEEEc
Confidence 5899999999999999999765 899887 57764111 2334566777889999887
No 113
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=96.76 E-value=0.0025 Score=54.73 Aligned_cols=56 Identities=25% Similarity=0.318 Sum_probs=40.0
Q ss_pred CCEEEEEcCChHHHHHHHHHccCCCEE--EEEcCCCCCC-------C-c---ccChhhhcccCcEEEEe
Q 027226 153 GKTVFILGFGNIGVELAKRLRPFGVKI--IATKRSWASH-------S-Q---VSCQSSGWHCKQVISIF 208 (226)
Q Consensus 153 gktvgIvG~G~IG~~vA~~l~afG~~V--~~~~r~~~~~-------~-~---~~~l~ell~~sD~v~l~ 208 (226)
-.+|+|+|+|.||+.+|+.++.-|..| +++|++.... . . ...+.+....+|++++-
T Consensus 3 ~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lgv~d~~~~~~~~~~~~~aD~Viva 71 (279)
T COG0287 3 SMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALELGVIDELTVAGLAEAAAEADLVIVA 71 (279)
T ss_pred CcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcCcccccccchhhhhcccCCEEEEe
Confidence 478999999999999999999888876 5555543221 0 0 11225677788998887
No 114
>PLN02858 fructose-bisphosphate aldolase
Probab=96.73 E-value=0.0015 Score=67.15 Aligned_cols=57 Identities=18% Similarity=0.158 Sum_probs=47.9
Q ss_pred CCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC--------CcccChhhhcccCcEEEEe
Q 027226 152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH--------SQVSCQSSGWHCKQVISIF 208 (226)
Q Consensus 152 ~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~--------~~~~~l~ell~~sD~v~l~ 208 (226)
+.++||+||+|.+|..+|+.|..-|.+|.+|||++... ....+..++...+|++.+.
T Consensus 3 ~~~~IGfIGLG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~~Ga~~~~s~~e~a~~advVi~~ 67 (1378)
T PLN02858 3 SAGVVGFVGLDSLSFELASSLLRSGFKVQAFEISTPLMEKFCELGGHRCDSPAEAAKDAAALVVV 67 (1378)
T ss_pred CCCeEEEEchhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEE
Confidence 46789999999999999999999999999999986542 2356778888889887776
No 115
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=96.72 E-value=0.0011 Score=57.09 Aligned_cols=51 Identities=14% Similarity=0.149 Sum_probs=42.8
Q ss_pred EEcCChHHHHHHHHHccCCCEEEEEcCCCCCC--------CcccChhhhcccCcEEEEe
Q 027226 158 ILGFGNIGVELAKRLRPFGVKIIATKRSWASH--------SQVSCQSSGWHCKQVISIF 208 (226)
Q Consensus 158 IvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~--------~~~~~l~ell~~sD~v~l~ 208 (226)
|||+|.+|..+|+.|...|.+|++|+|++... ....+..+++..+|++.+.
T Consensus 1 ~IGlG~mG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~~~~~~advVil~ 59 (288)
T TIGR01692 1 FIGLGNMGGPMAANLLKAGHPVRVFDLFPDAVEEAVAAGAQAAASPAEAAEGADRVITM 59 (288)
T ss_pred CCcccHhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEe
Confidence 58999999999999999999999999975432 1245678899999998888
No 116
>PLN00203 glutamyl-tRNA reductase
Probab=96.71 E-value=0.0016 Score=60.64 Aligned_cols=59 Identities=20% Similarity=0.201 Sum_probs=47.7
Q ss_pred ccCCCEEEEEcCChHHHHHHHHHccCCC-EEEEEcCCCCCC------C--------cccChhhhcccCcEEEEe
Q 027226 150 TLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASH------S--------QVSCQSSGWHCKQVISIF 208 (226)
Q Consensus 150 ~l~gktvgIvG~G~IG~~vA~~l~afG~-~V~~~~r~~~~~------~--------~~~~l~ell~~sD~v~l~ 208 (226)
.+.+++|+|||.|.+|+.+++.|...|+ +|+.++|+.... . ...++.+.+..+|+|...
T Consensus 263 ~l~~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~~g~~i~~~~~~dl~~al~~aDVVIsA 336 (519)
T PLN00203 263 SHASARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEFPDVEIIYKPLDEMLACAAEADVVFTS 336 (519)
T ss_pred CCCCCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhCCCceEeecHhhHHHHHhcCCEEEEc
Confidence 4889999999999999999999999998 699999975432 1 123455678889998776
No 117
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.70 E-value=0.0036 Score=53.61 Aligned_cols=68 Identities=12% Similarity=0.186 Sum_probs=57.6
Q ss_pred CCccCCCEEEEEcCC-hHHHHHHHHHccCCCEEEEEcCCCCCCCcccChhhhcccCcEEEEe-ccCCccccccccc
Q 027226 148 GETLLGKTVFILGFG-NIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSGWHCKQVISIF-NEKGFSSGEYCSR 221 (226)
Q Consensus 148 ~~~l~gktvgIvG~G-~IG~~vA~~l~afG~~V~~~~r~~~~~~~~~~l~ell~~sD~v~l~-~~~d~i~~~~~~~ 221 (226)
+.++.|++|.|+|.+ ..|+.+|.++..+|++|....++. .+|.+.+++||+++.. ....++..+..+.
T Consensus 147 ~i~l~Gk~V~ViGrs~~vGrpla~lL~~~~atVtv~hs~t------~~L~~~~~~ADIvI~Avgk~~lv~~~~vk~ 216 (279)
T PRK14178 147 KISIAGKRAVVVGRSIDVGRPMAALLLNADATVTICHSKT------ENLKAELRQADILVSAAGKAGFITPDMVKP 216 (279)
T ss_pred CCCCCCCEEEEECCCccccHHHHHHHHhCCCeeEEEecCh------hHHHHHHhhCCEEEECCCcccccCHHHcCC
Confidence 458999999999999 999999999999999998877642 3789999999999988 5567777776643
No 118
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=96.69 E-value=0.0026 Score=52.05 Aligned_cols=39 Identities=26% Similarity=0.333 Sum_probs=35.6
Q ss_pred CccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCC
Q 027226 149 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA 187 (226)
Q Consensus 149 ~~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~ 187 (226)
-.+.||+|.|||.|.+|...++.|...|++|+.+++...
T Consensus 6 l~l~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~~~ 44 (202)
T PRK06718 6 IDLSNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPELT 44 (202)
T ss_pred EEcCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCC
Confidence 478999999999999999999999999999999988653
No 119
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=96.69 E-value=0.0019 Score=59.39 Aligned_cols=55 Identities=15% Similarity=0.226 Sum_probs=43.4
Q ss_pred CEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC--------------CcccChhhhcc---cCcEEEEe
Q 027226 154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH--------------SQVSCQSSGWH---CKQVISIF 208 (226)
Q Consensus 154 ktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~--------------~~~~~l~ell~---~sD~v~l~ 208 (226)
.+|||||+|.+|+.+|+.|..-|.+|.+|+|++... ....++++++. .+|++.+.
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~i~~~~s~~e~v~~l~~~d~Iil~ 73 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASRGFKISVYNRTYEKTEEFVKKAKEGNTRVKGYHTLEELVNSLKKPRKVILL 73 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhhhhcCCcceecCCHHHHHhcCCCCCEEEEE
Confidence 479999999999999999999999999999976541 12456777775 47855555
No 120
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.67 E-value=0.0048 Score=53.02 Aligned_cols=68 Identities=15% Similarity=0.130 Sum_probs=56.7
Q ss_pred CCccCCCEEEEEcCC-hHHHHHHHHHccCCCEEEEEcCCCCCCCcccChhhhcccCcEEEEe-ccCCccccccccc
Q 027226 148 GETLLGKTVFILGFG-NIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSGWHCKQVISIF-NEKGFSSGEYCSR 221 (226)
Q Consensus 148 ~~~l~gktvgIvG~G-~IG~~vA~~l~afG~~V~~~~r~~~~~~~~~~l~ell~~sD~v~l~-~~~d~i~~~~~~~ 221 (226)
+.++.||+|.|||-| -+|+.+|.+|..-|++|...... ..+|.+.+++||+++.. ...+++..+.++.
T Consensus 152 ~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs~------t~~l~~~~~~ADIvV~AvG~p~~i~~~~vk~ 221 (285)
T PRK14191 152 HIEIKGKDVVIIGASNIVGKPLAMLMLNAGASVSVCHIL------TKDLSFYTQNADIVCVGVGKPDLIKASMVKK 221 (285)
T ss_pred CCCCCCCEEEEECCCchhHHHHHHHHHHCCCEEEEEeCC------cHHHHHHHHhCCEEEEecCCCCcCCHHHcCC
Confidence 468999999999999 99999999999999999987443 23688999999999888 7777777666643
No 121
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=96.67 E-value=0.0088 Score=46.06 Aligned_cols=68 Identities=21% Similarity=0.191 Sum_probs=56.1
Q ss_pred CCccCCCEEEEEcCC-hHHHHHHHHHccCCCEEEEEcCCCCCCCcccChhhhcccCcEEEEe-ccCCccccccccc
Q 027226 148 GETLLGKTVFILGFG-NIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSGWHCKQVISIF-NEKGFSSGEYCSR 221 (226)
Q Consensus 148 ~~~l~gktvgIvG~G-~IG~~vA~~l~afG~~V~~~~r~~~~~~~~~~l~ell~~sD~v~l~-~~~d~i~~~~~~~ 221 (226)
+.++.||++.|+|-+ .+|+.+|.+|..-|++|...+++. .++++..++||+++.. ....++..++++.
T Consensus 23 ~~~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t------~~l~~~v~~ADIVvsAtg~~~~i~~~~ikp 92 (140)
T cd05212 23 GVRLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKT------IQLQSKVHDADVVVVGSPKPEKVPTEWIKP 92 (140)
T ss_pred CCCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCC------cCHHHHHhhCCEEEEecCCCCccCHHHcCC
Confidence 568999999999987 579999999999999999997653 2789999999999988 4446676666553
No 122
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=96.66 E-value=0.0023 Score=54.46 Aligned_cols=55 Identities=11% Similarity=0.045 Sum_probs=41.6
Q ss_pred CEEEEEcCChHHHHHHHHHccC--CCEEE-EEcCCCCCC---------CcccChhhhcccCcEEEEe
Q 027226 154 KTVFILGFGNIGVELAKRLRPF--GVKII-ATKRSWASH---------SQVSCQSSGWHCKQVISIF 208 (226)
Q Consensus 154 ktvgIvG~G~IG~~vA~~l~af--G~~V~-~~~r~~~~~---------~~~~~l~ell~~sD~v~l~ 208 (226)
.+|||||+|.||+.+++.+... ++++. .+|+++... ..+.++++++...|++.+.
T Consensus 2 mrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a~~~a~~~~~~~~~~~~ell~~~DvVvi~ 68 (265)
T PRK13304 2 LKIGIVGCGAIASLITKAILSGRINAELYAFYDRNLEKAENLASKTGAKACLSIDELVEDVDLVVEC 68 (265)
T ss_pred CEEEEECccHHHHHHHHHHHcCCCCeEEEEEECCCHHHHHHHHHhcCCeeECCHHHHhcCCCEEEEc
Confidence 3799999999999999988754 57744 577764321 1246788888889999886
No 123
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=96.65 E-value=0.037 Score=51.39 Aligned_cols=126 Identities=10% Similarity=0.063 Sum_probs=75.2
Q ss_pred CceEEEEcCCCCCHHHHhcC-CCceEEEecCccCCccchhHHHhCCcEEEecCCCC--C-----CCchhHHHHHHHHH-H
Q 027226 55 NYHLCVVKTMRLDSNCISRA-NQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDV--T-----GNAASCAELTIYLM-L 125 (226)
Q Consensus 55 ~adv~i~~~~~~~~~~l~~~-~~Lk~I~~~~aG~d~id~~~~~~~gi~v~n~~~~~--~-----~~~~~vAE~~l~~~-L 125 (226)
++|+++... .++.+.++.+ ++--+|....-.-|.=.++.+.+++|++....-.- + .-=.+||+.+=+.. +
T Consensus 64 ~adiIlkV~-~P~~~e~~~l~~g~tli~~l~p~~n~~ll~~l~~k~it~ia~E~vprisraq~~d~lssma~iAGy~Avi 142 (511)
T TIGR00561 64 QSDIILKVN-APSDAEIAELPAGKALVSFIWPAQNPELMEKLAAKNITVLAMDAVPRISRAQKLDALSSMANIAGYRAII 142 (511)
T ss_pred cCCEEEEeC-CCCHHHHHhcCCCCEEEEEcCccCCHHHHHHHHHcCCEEEEeecccccccCCccCcchhhHHHHHHHHHH
Confidence 578887532 4566667776 56667777666555545667788898876543110 0 00123444432211 1
Q ss_pred HHhhcHHHHHHHHHhCCCCCCCCCccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCC
Q 027226 126 GLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA 187 (226)
Q Consensus 126 ~~~R~~~~~~~~~~~~~w~~~~~~~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~ 187 (226)
..+..+.++. .|.-. ......+.++.|+|.|.+|...+..++.+|++|++++++..
T Consensus 143 ~Aa~~lgr~~----~g~~t--aag~vp~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~ 198 (511)
T TIGR00561 143 EAAHEFGRFF----TGQIT--AAGKVPPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPE 198 (511)
T ss_pred HHHHHhhhhc----CCcee--cCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 1112221111 11111 11245579999999999999999999999999999998753
No 124
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=96.63 E-value=0.0032 Score=49.41 Aligned_cols=40 Identities=25% Similarity=0.243 Sum_probs=35.9
Q ss_pred CCccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCC
Q 027226 148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA 187 (226)
Q Consensus 148 ~~~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~ 187 (226)
.-.|.|++|.|+|-|.+|.+.++.|...|++|..+++...
T Consensus 8 ~l~l~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp~~~ 47 (157)
T PRK06719 8 MFNLHNKVVVIIGGGKIAYRKASGLKDTGAFVTVVSPEIC 47 (157)
T ss_pred EEEcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCccC
Confidence 3579999999999999999999999999999999976543
No 125
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=96.62 E-value=0.024 Score=52.66 Aligned_cols=124 Identities=11% Similarity=0.065 Sum_probs=75.2
Q ss_pred CceEEEEcCCCCCHHHHhcCC-CceEEEecCccCCccchhHHHhCCcEEEecCCCC--C-----CCchhHHHHHHHHHHH
Q 027226 55 NYHLCVVKTMRLDSNCISRAN-QMKLIMQFGVGLEGVDINAATRCGIKVARIPGDV--T-----GNAASCAELTIYLMLG 126 (226)
Q Consensus 55 ~adv~i~~~~~~~~~~l~~~~-~Lk~I~~~~aG~d~id~~~~~~~gi~v~n~~~~~--~-----~~~~~vAE~~l~~~L~ 126 (226)
++|+++.-. .++.+.++.++ +-.+|....-..+.=.++.+.+++|.+....-.. + .-=.++|+.+=
T Consensus 65 ~~diilkV~-~P~~~e~~~l~~g~~li~~l~p~~~~~l~~~l~~~~it~ia~e~vpr~sraq~~d~lssma~IAG----- 138 (509)
T PRK09424 65 QSDIILKVN-APSDDEIALLREGATLVSFIWPAQNPELLEKLAARGVTVLAMDAVPRISRAQSLDALSSMANIAG----- 138 (509)
T ss_pred cCCEEEEeC-CCCHHHHHhcCCCCEEEEEeCcccCHHHHHHHHHcCCEEEEeecccccccCCCcccccchhhhhH-----
Confidence 588888533 45666677774 5666676666556545667788898876532210 0 00123333332
Q ss_pred HhhcHHHHHHHHHhCCCCCC---CCCccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCC
Q 027226 127 LLRKQNEMRMAIEQKKLGVP---TGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA 187 (226)
Q Consensus 127 ~~R~~~~~~~~~~~~~w~~~---~~~~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~ 187 (226)
+|-+....+.. ++.... ......+.+|.|+|.|.||...+..++.+|++|+++|+++.
T Consensus 139 -y~Av~~aa~~~--~~~~~g~~taaG~~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~ 199 (509)
T PRK09424 139 -YRAVIEAAHEF--GRFFTGQITAAGKVPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPE 199 (509)
T ss_pred -HHHHHHHHHHh--cccCCCceeccCCcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 22222111111 111111 11245699999999999999999999999999999999754
No 126
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=96.61 E-value=0.0024 Score=54.65 Aligned_cols=55 Identities=16% Similarity=0.169 Sum_probs=42.0
Q ss_pred CEEEEEcCChHHHHHHHHHccCC----CEEEEEcCCCCCC-------C---c-ccChhhhcccCcEEEEe
Q 027226 154 KTVFILGFGNIGVELAKRLRPFG----VKIIATKRSWASH-------S---Q-VSCQSSGWHCKQVISIF 208 (226)
Q Consensus 154 ktvgIvG~G~IG~~vA~~l~afG----~~V~~~~r~~~~~-------~---~-~~~l~ell~~sD~v~l~ 208 (226)
.+|+|||+|++|+++++.+..-| .+|++|+|+.... . . ..+..+++..+|++.+.
T Consensus 2 ~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~~~~~~~l~~~~~~~~~~~~~~e~~~~aDvVila 71 (277)
T PRK06928 2 EKIGFIGYGSMADMIATKLLETEVATPEEIILYSSSKNEHFNQLYDKYPTVELADNEAEIFTKCDHSFIC 71 (277)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCcHHHHHHHHHHcCCeEEeCCHHHHHhhCCEEEEe
Confidence 37999999999999999998777 6899999864221 1 1 24556678889988877
No 127
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=96.61 E-value=0.0048 Score=52.31 Aligned_cols=56 Identities=16% Similarity=0.136 Sum_probs=41.7
Q ss_pred CCEEEEEcCChHHHHHHHHHccCC----CEEEEEcCCCCCC--CcccChhhhcccCcEEEEe
Q 027226 153 GKTVFILGFGNIGVELAKRLRPFG----VKIIATKRSWASH--SQVSCQSSGWHCKQVISIF 208 (226)
Q Consensus 153 gktvgIvG~G~IG~~vA~~l~afG----~~V~~~~r~~~~~--~~~~~l~ell~~sD~v~l~ 208 (226)
..+|||||+|.+|.++++.+..-| -+|++++|+.... ....+..++...+|++.+.
T Consensus 3 ~mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~D~Vila 64 (260)
T PTZ00431 3 NIRVGFIGLGKMGSALAYGIENSNIIGKENIYYHTPSKKNTPFVYLQSNEELAKTCDIIVLA 64 (260)
T ss_pred CCEEEEECccHHHHHHHHHHHhCCCCCcceEEEECCChhcCCeEEeCChHHHHHhCCEEEEE
Confidence 358999999999999999998554 2499999865432 1233455667889988877
No 128
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.60 E-value=0.0029 Score=57.94 Aligned_cols=39 Identities=26% Similarity=0.358 Sum_probs=35.3
Q ss_pred CccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCC
Q 027226 149 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA 187 (226)
Q Consensus 149 ~~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~ 187 (226)
..+.+++|+|+|+|..|+++|+.|+..|++|.++|+...
T Consensus 10 ~~~~~~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~ 48 (458)
T PRK01710 10 KFIKNKKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKSE 48 (458)
T ss_pred hhhcCCeEEEEcccHHHHHHHHHHHHCCCEEEEECCCCC
Confidence 456689999999999999999999999999999998653
No 129
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=96.59 E-value=0.0017 Score=54.91 Aligned_cols=55 Identities=15% Similarity=0.071 Sum_probs=41.0
Q ss_pred EEEEEcCChHHHHHHHHHccCCCE---EEEEcCCCCCC------C----cccChhhhcccCcEEEEec
Q 027226 155 TVFILGFGNIGVELAKRLRPFGVK---IIATKRSWASH------S----QVSCQSSGWHCKQVISIFN 209 (226)
Q Consensus 155 tvgIvG~G~IG~~vA~~l~afG~~---V~~~~r~~~~~------~----~~~~l~ell~~sD~v~l~~ 209 (226)
+|||||+|++|+.+++.+..-|.. |.+++|+.... . ...+.++++..+|++.+.-
T Consensus 2 ~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~aDvVilav 69 (258)
T PRK06476 2 KIGFIGTGAITEAMVTGLLTSPADVSEIIVSPRNAQIAARLAERFPKVRIAKDNQAVVDRSDVVFLAV 69 (258)
T ss_pred eEEEECcCHHHHHHHHHHHhCCCChheEEEECCCHHHHHHHHHHcCCceEeCCHHHHHHhCCEEEEEe
Confidence 699999999999999999866643 57888864321 1 1245667788899988873
No 130
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=96.59 E-value=0.0038 Score=50.35 Aligned_cols=63 Identities=24% Similarity=0.330 Sum_probs=47.0
Q ss_pred CCccCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCCCCC--------------------CcccChhhhcccCcEEE
Q 027226 148 GETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWASH--------------------SQVSCQSSGWHCKQVIS 206 (226)
Q Consensus 148 ~~~l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~~~~--------------------~~~~~l~ell~~sD~v~ 206 (226)
+..++++++.|+|- |.+|+.+++.|...|.+|+.++|+.... .+..++.+.+..+|++.
T Consensus 23 ~~~l~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~diVi 102 (194)
T cd01078 23 GKDLKGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAADSLRARFGEGVGAVETSDDAARAAAIKGADVVF 102 (194)
T ss_pred CcCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhhcCCcEEEeeCCCHHHHHHHHhcCCEEE
Confidence 35688999999995 9999999999999999999999874321 01122346778888776
Q ss_pred Eecc
Q 027226 207 IFNE 210 (226)
Q Consensus 207 l~~~ 210 (226)
....
T Consensus 103 ~at~ 106 (194)
T cd01078 103 AAGA 106 (194)
T ss_pred ECCC
Confidence 6533
No 131
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=96.57 E-value=0.003 Score=57.05 Aligned_cols=33 Identities=21% Similarity=0.453 Sum_probs=30.8
Q ss_pred EEEEEcCChHHHHHHHHHccCCCEEEEEcCCCC
Q 027226 155 TVFILGFGNIGVELAKRLRPFGVKIIATKRSWA 187 (226)
Q Consensus 155 tvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~ 187 (226)
+|||||+|.+|..+|..|..-|.+|++||++..
T Consensus 2 kI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~ 34 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADLGHEVTGVDIDQE 34 (411)
T ss_pred EEEEECCCchhHHHHHHHHhcCCeEEEEECCHH
Confidence 699999999999999999999999999999754
No 132
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=96.56 E-value=0.0031 Score=51.99 Aligned_cols=54 Identities=26% Similarity=0.292 Sum_probs=41.8
Q ss_pred EEEEEc-CChHHHHHHHHHccCCCEEEEEcCCCCCC-------------------CcccChhhhcccCcEEEEe
Q 027226 155 TVFILG-FGNIGVELAKRLRPFGVKIIATKRSWASH-------------------SQVSCQSSGWHCKQVISIF 208 (226)
Q Consensus 155 tvgIvG-~G~IG~~vA~~l~afG~~V~~~~r~~~~~-------------------~~~~~l~ell~~sD~v~l~ 208 (226)
+|+||| .|++|+.+|+.|..-|.+|..++|+.... ....+..+.+..+|++.+.
T Consensus 2 kI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~ea~~~aDvVila 75 (219)
T TIGR01915 2 KIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDLEKAEEAAAKALEELGHGGSDIKVTGADNAEAAKRADVVILA 75 (219)
T ss_pred EEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCHHHHHHHHHHHHhhccccCCCceEEEeChHHHHhcCCEEEEE
Confidence 699997 99999999999998899999999875321 0012345677888988877
No 133
>PRK14030 glutamate dehydrogenase; Provisional
Probab=96.55 E-value=0.0068 Score=55.21 Aligned_cols=35 Identities=37% Similarity=0.613 Sum_probs=32.7
Q ss_pred CCccCCCEEEEEcCChHHHHHHHHHccCCCEEEEE
Q 027226 148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIAT 182 (226)
Q Consensus 148 ~~~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~ 182 (226)
+.++.|+||.|=|+|++|+.+|+.|..+|++|+++
T Consensus 223 g~~l~g~~vaIQGfGnVG~~aA~~L~e~GakvVav 257 (445)
T PRK14030 223 GIDIKGKTVAISGFGNVAWGAATKATELGAKVVTI 257 (445)
T ss_pred CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEE
Confidence 45799999999999999999999999999999993
No 134
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=96.52 E-value=0.0022 Score=59.29 Aligned_cols=55 Identities=15% Similarity=0.124 Sum_probs=43.6
Q ss_pred CEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC---C------------cccChhhhccc---CcEEEEe
Q 027226 154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH---S------------QVSCQSSGWHC---KQVISIF 208 (226)
Q Consensus 154 ktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~---~------------~~~~l~ell~~---sD~v~l~ 208 (226)
.+||+||+|..|+.+|+.|..-|.+|.+|||++... . ...+++++... +|++.+.
T Consensus 7 ~~IG~IGLG~MG~~mA~nL~~~G~~V~V~NRt~~k~~~l~~~~~~~Ga~~~~~a~s~~e~v~~l~~~dvIi~~ 79 (493)
T PLN02350 7 SRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGNLPLYGFKDPEDFVLSIQKPRSVIIL 79 (493)
T ss_pred CCEEEEeeHHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhhhcCCcccccCCCHHHHHhcCCCCCEEEEE
Confidence 369999999999999999999999999999975432 0 23456676665 8887766
No 135
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=96.52 E-value=0.0039 Score=54.12 Aligned_cols=55 Identities=18% Similarity=0.160 Sum_probs=42.6
Q ss_pred CEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC-----C-----------------cccChhhhcccCcEEEEe
Q 027226 154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH-----S-----------------QVSCQSSGWHCKQVISIF 208 (226)
Q Consensus 154 ktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~-----~-----------------~~~~l~ell~~sD~v~l~ 208 (226)
.+|+|+|.|.+|..+|..|..-|.+|..|+|++... . ...+.++.+..+|++.+.
T Consensus 2 mkI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~ 78 (325)
T PRK00094 2 MKIAVLGAGSWGTALAIVLARNGHDVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRATTDLAEALADADLILVA 78 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHHhCCCEEEEe
Confidence 379999999999999999998899999999964221 0 123455677788887776
No 136
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=96.50 E-value=0.0031 Score=57.12 Aligned_cols=61 Identities=18% Similarity=0.221 Sum_probs=48.8
Q ss_pred CccCCCEEEEEcCChHHHHHHHHHccCCC-EEEEEcCCCCCC------C------cccChhhhcccCcEEEEec
Q 027226 149 ETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASH------S------QVSCQSSGWHCKQVISIFN 209 (226)
Q Consensus 149 ~~l~gktvgIvG~G~IG~~vA~~l~afG~-~V~~~~r~~~~~------~------~~~~l~ell~~sD~v~l~~ 209 (226)
..+.|+++.|+|.|.+|+.+|+.|...|. +|+.++|+.... . ..+++.+.+..+|+++...
T Consensus 177 ~~l~~kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~~~~~~~~~~~l~~~l~~aDiVI~aT 250 (414)
T PRK13940 177 DNISSKNVLIIGAGQTGELLFRHVTALAPKQIMLANRTIEKAQKITSAFRNASAHYLSELPQLIKKADIIIAAV 250 (414)
T ss_pred cCccCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHhcCCeEecHHHHHHHhccCCEEEECc
Confidence 46889999999999999999999999996 699999985431 1 1244567788899988873
No 137
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=96.50 E-value=0.00088 Score=54.74 Aligned_cols=44 Identities=30% Similarity=0.459 Sum_probs=38.9
Q ss_pred CCCCCCCCccCCCEEEEEcCChHHHHHHHHHccCCC-EEEEEcCC
Q 027226 142 KLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRS 185 (226)
Q Consensus 142 ~w~~~~~~~l~gktvgIvG~G~IG~~vA~~l~afG~-~V~~~~r~ 185 (226)
.|.......|.+++|.|+|.|.+|..+|+.|...|. ++..+|+.
T Consensus 10 ~~g~~~q~kl~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d 54 (202)
T TIGR02356 10 DIGEEGQQRLLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD 54 (202)
T ss_pred hcCHHHHHHhcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence 465555678999999999999999999999999998 79999986
No 138
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=96.49 E-value=0.004 Score=57.45 Aligned_cols=40 Identities=25% Similarity=0.321 Sum_probs=36.1
Q ss_pred CCccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCC
Q 027226 148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA 187 (226)
Q Consensus 148 ~~~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~ 187 (226)
+..+.+++++|+|.|.+|++++..+...|++|..++|+..
T Consensus 327 ~~~~~~k~vlIiGaGgiG~aia~~L~~~G~~V~i~~R~~~ 366 (477)
T PRK09310 327 NIPLNNQHVAIVGAGGAAKAIATTLARAGAELLIFNRTKA 366 (477)
T ss_pred CCCcCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 4567899999999999999999999999999999998643
No 139
>PRK07680 late competence protein ComER; Validated
Probab=96.48 E-value=0.0025 Score=54.27 Aligned_cols=54 Identities=20% Similarity=0.211 Sum_probs=41.6
Q ss_pred EEEEEcCChHHHHHHHHHccCCC----EEEEEcCCCCCC---------C-cccChhhhcccCcEEEEe
Q 027226 155 TVFILGFGNIGVELAKRLRPFGV----KIIATKRSWASH---------S-QVSCQSSGWHCKQVISIF 208 (226)
Q Consensus 155 tvgIvG~G~IG~~vA~~l~afG~----~V~~~~r~~~~~---------~-~~~~l~ell~~sD~v~l~ 208 (226)
+|||||+|.+|+++++.|..-|. +|.+++|+.... . ...+..+++..+|++.+.
T Consensus 2 ~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~aDiVila 69 (273)
T PRK07680 2 NIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKERYPGIHVAKTIEEVISQSDLIFIC 69 (273)
T ss_pred EEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHHHcCCeEEECCHHHHHHhCCEEEEe
Confidence 69999999999999999987773 799999975321 1 123556678889988777
No 140
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=96.47 E-value=0.0056 Score=51.98 Aligned_cols=55 Identities=15% Similarity=0.123 Sum_probs=38.1
Q ss_pred CEEEEEcCChHHHHHHHHHcc---CCCEEEEEcCCCC-CC-------CcccChhhh-cccCcEEEEe
Q 027226 154 KTVFILGFGNIGVELAKRLRP---FGVKIIATKRSWA-SH-------SQVSCQSSG-WHCKQVISIF 208 (226)
Q Consensus 154 ktvgIvG~G~IG~~vA~~l~a---fG~~V~~~~r~~~-~~-------~~~~~l~el-l~~sD~v~l~ 208 (226)
.+|||||+|.||+.+++.+.. .++++.++.++.. .. .-..+++++ ....|+|+=.
T Consensus 3 ~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~~~~~~~~~~~~~l~~ll~~~~DlVVE~ 69 (267)
T PRK13301 3 HRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADLPPALAGRVALLDGLPGLLAWRPDLVVEA 69 (267)
T ss_pred eEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHHHHHhhccCcccCCHHHHhhcCCCEEEEC
Confidence 689999999999999998863 3466655433322 11 125568886 4778888755
No 141
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.42 E-value=0.0061 Score=52.35 Aligned_cols=34 Identities=24% Similarity=0.250 Sum_probs=31.3
Q ss_pred CEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCC
Q 027226 154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA 187 (226)
Q Consensus 154 ktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~ 187 (226)
++|+|||.|.+|..+|..+..-|.+|+.||++..
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~ 37 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDE 37 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence 5899999999999999999988999999998753
No 142
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=96.42 E-value=0.0078 Score=52.95 Aligned_cols=58 Identities=17% Similarity=0.145 Sum_probs=45.6
Q ss_pred CccCCCEEEEEcCChHHHHHHHHHccCCC-EEEEEcCCCCCCCcccChh----hhcccCcEEEE
Q 027226 149 ETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQS----SGWHCKQVISI 207 (226)
Q Consensus 149 ~~l~gktvgIvG~G~IG~~vA~~l~afG~-~V~~~~r~~~~~~~~~~l~----ell~~sD~v~l 207 (226)
..+.+++|.|||.|.+|+.+|+.|..-|. +|+..+|+... .++.++. +++..+|+|..
T Consensus 170 ~~l~~k~vLvIGaGem~~l~a~~L~~~g~~~i~v~nRt~~~-~~~~~~~~~~~~~~~~~DvVIs 232 (338)
T PRK00676 170 QKSKKASLLFIGYSEINRKVAYYLQRQGYSRITFCSRQQLT-LPYRTVVREELSFQDPYDVIFF 232 (338)
T ss_pred CCccCCEEEEEcccHHHHHHHHHHHHcCCCEEEEEcCCccc-cchhhhhhhhhhcccCCCEEEE
Confidence 46899999999999999999999999996 69999998653 2233332 45667788776
No 143
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=96.41 E-value=0.0025 Score=49.90 Aligned_cols=58 Identities=19% Similarity=0.169 Sum_probs=44.6
Q ss_pred EEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC----------------------CcccChhhhcccCcEEEEeccCC
Q 027226 155 TVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH----------------------SQVSCQSSGWHCKQVISIFNEKG 212 (226)
Q Consensus 155 tvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~----------------------~~~~~l~ell~~sD~v~l~~~~d 212 (226)
+|+|+|.|+.|.++|..|..-|-+|..|+|..... .-..++++.++.+|++.+.-.+.
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~~ad~IiiavPs~ 80 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKATTDLEEALEDADIIIIAVPSQ 80 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHTT-SEEEE-S-GG
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCcccccccCHHHHhCcccEEEecccHH
Confidence 68999999999999999999999999999974210 01456888999999988874433
No 144
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=96.41 E-value=0.0014 Score=52.85 Aligned_cols=34 Identities=24% Similarity=0.425 Sum_probs=27.3
Q ss_pred CEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCC
Q 027226 154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA 187 (226)
Q Consensus 154 ktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~ 187 (226)
.+|+|+|+|.+|-.+|..+...|.+|+++|....
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~ 34 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEE 34 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HH
T ss_pred CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChH
Confidence 4799999999999999999999999999998643
No 145
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=96.39 E-value=0.013 Score=47.51 Aligned_cols=74 Identities=19% Similarity=0.220 Sum_probs=56.1
Q ss_pred CCCccCCCEEEEEcCCh-HHHHHHHHHccCCCEEEEEcCCC-------------CCC--CcccChhhhcccCcEEEEe-c
Q 027226 147 TGETLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSW-------------ASH--SQVSCQSSGWHCKQVISIF-N 209 (226)
Q Consensus 147 ~~~~l~gktvgIvG~G~-IG~~vA~~l~afG~~V~~~~r~~-------------~~~--~~~~~l~ell~~sD~v~l~-~ 209 (226)
.+.++.||++.|||-+. +|+-+|.+|..-|++|+.++.+. +.. .....+.+.+++||+++.. .
T Consensus 56 ~~~~l~GK~vvVIGrS~iVGkPla~lL~~~~AtVti~~~~~~~~~~~~~~~~hs~t~~~~~~~~l~~~~~~ADIVIsAvG 135 (197)
T cd01079 56 YGNRLYGKTITIINRSEVVGRPLAALLANDGARVYSVDINGIQVFTRGESIRHEKHHVTDEEAMTLDCLSQSDVVITGVP 135 (197)
T ss_pred cCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEEecCcccccccccccccccccccchhhHHHHHhhhCCEEEEccC
Confidence 36789999999999996 59999999999999999985211 110 0011278999999999887 7
Q ss_pred cCCc-ccccccc
Q 027226 210 EKGF-SSGEYCS 220 (226)
Q Consensus 210 ~~d~-i~~~~~~ 220 (226)
..+| |..+.++
T Consensus 136 ~~~~~i~~d~ik 147 (197)
T cd01079 136 SPNYKVPTELLK 147 (197)
T ss_pred CCCCccCHHHcC
Confidence 7788 7666654
No 146
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=96.39 E-value=0.0045 Score=49.64 Aligned_cols=34 Identities=24% Similarity=0.346 Sum_probs=29.5
Q ss_pred EEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCC
Q 027226 155 TVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS 188 (226)
Q Consensus 155 tvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~ 188 (226)
+|+|||.|.+|+.+|..+...|++|..||+++..
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~ 34 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPEA 34 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHH
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChHH
Confidence 6999999999999999999999999999997543
No 147
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=96.36 E-value=0.0055 Score=53.84 Aligned_cols=37 Identities=30% Similarity=0.436 Sum_probs=34.5
Q ss_pred CCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCC
Q 027226 152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS 188 (226)
Q Consensus 152 ~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~ 188 (226)
.|++|+|+|+|.+|....+.++++|++|++++++.++
T Consensus 166 pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K 202 (339)
T COG1064 166 PGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEK 202 (339)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHH
Confidence 3899999999999999999999999999999998764
No 148
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=96.36 E-value=0.0034 Score=52.85 Aligned_cols=53 Identities=19% Similarity=0.316 Sum_probs=41.5
Q ss_pred HHHHHHHhCCCCCCCCCccCCCEEEEEcCChHHHHHHHHHccCCC-EEEEEcCC
Q 027226 133 EMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRS 185 (226)
Q Consensus 133 ~~~~~~~~~~w~~~~~~~l~gktvgIvG~G~IG~~vA~~l~afG~-~V~~~~r~ 185 (226)
+|.++..-..|.......|..++|+|+|.|.+|..+|+.|...|. ++..+|..
T Consensus 12 rY~Rqi~l~~~g~~~Q~~L~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D 65 (245)
T PRK05690 12 RYNRQIILRGFDFDGQEKLKAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFD 65 (245)
T ss_pred HHHHhccchhcCHHHHHHhcCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 444444334565545578999999999999999999999999998 68888774
No 149
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=96.32 E-value=0.0056 Score=52.68 Aligned_cols=39 Identities=26% Similarity=0.278 Sum_probs=34.7
Q ss_pred ccCCCEEEEEcCChHHHHHHHHHccCCC-EEEEEcCCCCC
Q 027226 150 TLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWAS 188 (226)
Q Consensus 150 ~l~gktvgIvG~G~IG~~vA~~l~afG~-~V~~~~r~~~~ 188 (226)
.+.+++|.|+|.|..|++++..|...|+ +|+.++|+...
T Consensus 124 ~~~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~~k 163 (284)
T PRK12549 124 DASLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDPAR 163 (284)
T ss_pred CccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCHHH
Confidence 4678999999999999999999999998 79999997543
No 150
>KOG0409 consensus Predicted dehydrogenase [General function prediction only]
Probab=96.32 E-value=0.0048 Score=53.05 Aligned_cols=60 Identities=17% Similarity=0.189 Sum_probs=49.4
Q ss_pred CccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC--------CcccChhhhcccCcEEEEe
Q 027226 149 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH--------SQVSCQSSGWHCKQVISIF 208 (226)
Q Consensus 149 ~~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~--------~~~~~l~ell~~sD~v~l~ 208 (226)
...+.++||.||+|..|..++.-|-.-|.+|++|||+.... .-..+-.|+.+.||++...
T Consensus 31 ~~~s~~~iGFIGLG~MG~~M~~nLik~G~kVtV~dr~~~k~~~f~~~Ga~v~~sPaeVae~sDvvitm 98 (327)
T KOG0409|consen 31 ITPSKTRIGFIGLGNMGSAMVSNLIKAGYKVTVYDRTKDKCKEFQEAGARVANSPAEVAEDSDVVITM 98 (327)
T ss_pred CCcccceeeEEeeccchHHHHHHHHHcCCEEEEEeCcHHHHHHHHHhchhhhCCHHHHHhhcCEEEEE
Confidence 34568999999999999999999999999999999986553 1134556888999988765
No 151
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=96.30 E-value=0.0098 Score=54.25 Aligned_cols=39 Identities=28% Similarity=0.506 Sum_probs=35.3
Q ss_pred ccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCC
Q 027226 150 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS 188 (226)
Q Consensus 150 ~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~ 188 (226)
...+++|.|+|+|.-|.++|+.|+..|++|+++|.++.+
T Consensus 4 ~~~~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~ 42 (448)
T COG0771 4 DFQGKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAP 42 (448)
T ss_pred cccCCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCc
Confidence 344999999999999999999999999999999976655
No 152
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=96.26 E-value=0.0067 Score=50.58 Aligned_cols=57 Identities=14% Similarity=0.160 Sum_probs=41.2
Q ss_pred CCCEEEEEcCChHHHHHHHHHccCC---CE-EEEEcCCC-CCC--------C-cccChhhhcccCcEEEEe
Q 027226 152 LGKTVFILGFGNIGVELAKRLRPFG---VK-IIATKRSW-ASH--------S-QVSCQSSGWHCKQVISIF 208 (226)
Q Consensus 152 ~gktvgIvG~G~IG~~vA~~l~afG---~~-V~~~~r~~-~~~--------~-~~~~l~ell~~sD~v~l~ 208 (226)
...+|||||.|++|+++++.+..-| .+ |+.++|+. +.. . ...+.++++..+|++.+.
T Consensus 3 ~~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DiViia 73 (245)
T PRK07634 3 KKHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQARYNVSTTTDWKQHVTSVDTIVLA 73 (245)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHHHcCcEEeCChHHHHhcCCEEEEe
Confidence 3578999999999999999886544 44 77787642 111 1 134567788899998887
No 153
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=96.25 E-value=0.0044 Score=51.49 Aligned_cols=62 Identities=13% Similarity=0.197 Sum_probs=46.3
Q ss_pred CEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC-----------------CcccChhhh-cccCcEEEEeccCCccc
Q 027226 154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH-----------------SQVSCQSSG-WHCKQVISIFNEKGFSS 215 (226)
Q Consensus 154 ktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~-----------------~~~~~l~el-l~~sD~v~l~~~~d~i~ 215 (226)
+++.|+|.|+.|..+|+.|...|.+|+..++..... ....-|.++ +..+|+++.....|.++
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~aD~vva~t~~d~~N 80 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGIDDADAVVAATGNDEVN 80 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCCCcCCEEEEeeCCCHHH
Confidence 578999999999999999999999999999864331 122334444 67778877775555544
No 154
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=96.25 E-value=0.0015 Score=54.28 Aligned_cols=44 Identities=27% Similarity=0.410 Sum_probs=37.4
Q ss_pred CCCCCCCCccCCCEEEEEcCChHHHHHHHHHccCCC-EEEEEcCC
Q 027226 142 KLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRS 185 (226)
Q Consensus 142 ~w~~~~~~~l~gktvgIvG~G~IG~~vA~~l~afG~-~V~~~~r~ 185 (226)
.|.......|.+++|.|+|.|.+|.++|+.|...|+ +++.+|..
T Consensus 10 ~~g~~~q~~L~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D 54 (228)
T cd00757 10 EIGEEGQEKLKNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDD 54 (228)
T ss_pred hcCHHHHHHHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 465544578999999999999999999999999999 68888764
No 155
>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II. All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.
Probab=96.24 E-value=0.0057 Score=53.77 Aligned_cols=53 Identities=13% Similarity=0.173 Sum_probs=37.6
Q ss_pred EEEEcCChHHHHHHHHHc-cCCCEEEEEcCCCCCC-------Cc---------------------ccChhhhcccCcEEE
Q 027226 156 VFILGFGNIGVELAKRLR-PFGVKIIATKRSWASH-------SQ---------------------VSCQSSGWHCKQVIS 206 (226)
Q Consensus 156 vgIvG~G~IG~~vA~~l~-afG~~V~~~~r~~~~~-------~~---------------------~~~l~ell~~sD~v~ 206 (226)
|||+|||+||+.+++.+. .=+|+|.++.....+. .+ ..++++++..+|+|+
T Consensus 1 VaInG~GrIGr~varav~~~~d~elVaVnD~~~~~~a~lA~~lgyds~~~~~~~~~~~~~~~l~v~g~~eeLl~~vDiVv 80 (333)
T TIGR01546 1 VGVNGYGTIGKRVADAVTKQDDMKLVGVTKTSPDFEAYRAKELGIPVYAASEEFIPRFEEAGIEVAGTLEDLLEKVDIVV 80 (333)
T ss_pred CEEECCcHHHHHHHHHHhhCCCcEEEEEecCChHHHHHHHHHhCCCEEeecCCcceEeccCceEecCCHHHHhhcCCEEE
Confidence 699999999999999876 3468888765421110 00 224778888888888
Q ss_pred Ee
Q 027226 207 IF 208 (226)
Q Consensus 207 l~ 208 (226)
.+
T Consensus 81 e~ 82 (333)
T TIGR01546 81 DA 82 (333)
T ss_pred EC
Confidence 77
No 156
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=96.20 E-value=0.0083 Score=54.66 Aligned_cols=38 Identities=32% Similarity=0.531 Sum_probs=34.5
Q ss_pred CCccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCC
Q 027226 148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRS 185 (226)
Q Consensus 148 ~~~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~ 185 (226)
+.++.|+||.|=|+|++|+.+|++|..+|++|++++-+
T Consensus 232 ~~~l~Gk~VaVqG~GnVg~~aa~~L~e~GakVVavSD~ 269 (454)
T PTZ00079 232 NDSLEGKTVVVSGSGNVAQYAVEKLLQLGAKVLTMSDS 269 (454)
T ss_pred CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcC
Confidence 46799999999999999999999999999999976654
No 157
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.15 E-value=0.016 Score=49.74 Aligned_cols=68 Identities=10% Similarity=0.079 Sum_probs=56.6
Q ss_pred CCccCCCEEEEEcCC-hHHHHHHHHHccCCCEEEEEcCCCCCCCcccChhhhcccCcEEEEe-ccCCccccccccc
Q 027226 148 GETLLGKTVFILGFG-NIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSGWHCKQVISIF-NEKGFSSGEYCSR 221 (226)
Q Consensus 148 ~~~l~gktvgIvG~G-~IG~~vA~~l~afG~~V~~~~r~~~~~~~~~~l~ell~~sD~v~l~-~~~d~i~~~~~~~ 221 (226)
+.++.||++.|||-| -+|+-+|.+|..-|+.|...... ..+|.+..++||+++.. ....|+..++++.
T Consensus 152 ~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~AtVti~hs~------T~~l~~~~~~ADIvV~AvGkp~~i~~~~vk~ 221 (281)
T PRK14183 152 EIDVKGKDVCVVGASNIVGKPMAALLLNANATVDICHIF------TKDLKAHTKKADIVIVGVGKPNLITEDMVKE 221 (281)
T ss_pred CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC------CcCHHHHHhhCCEEEEecCcccccCHHHcCC
Confidence 458999999999999 88999999999889999876433 23688999999999888 7777777766654
No 158
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=96.14 E-value=0.0071 Score=52.01 Aligned_cols=34 Identities=21% Similarity=0.277 Sum_probs=31.6
Q ss_pred CEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCC
Q 027226 154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA 187 (226)
Q Consensus 154 ktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~ 187 (226)
++|+|||.|.+|..+|..+...|.+|+.||+++.
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~ 37 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEE 37 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence 6899999999999999999999999999999753
No 159
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=96.11 E-value=0.0063 Score=54.85 Aligned_cols=60 Identities=25% Similarity=0.300 Sum_probs=49.5
Q ss_pred CccCCCEEEEEcCChHHHHHHHHHccCCC-EEEEEcCCCCCC-----------CcccChhhhcccCcEEEEe
Q 027226 149 ETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASH-----------SQVSCQSSGWHCKQVISIF 208 (226)
Q Consensus 149 ~~l~gktvgIvG~G~IG~~vA~~l~afG~-~V~~~~r~~~~~-----------~~~~~l~ell~~sD~v~l~ 208 (226)
..|+++++.|||.|.+|+-+|+.|..-|. +|+..+|+.... ....++.+.+.++|++..-
T Consensus 174 ~~L~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~~~~~~l~el~~~l~~~DvViss 245 (414)
T COG0373 174 GSLKDKKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLGAEAVALEELLEALAEADVVISS 245 (414)
T ss_pred cccccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhCCeeecHHHHHHhhhhCCEEEEe
Confidence 35999999999999999999999999995 788888876543 1245567788999998876
No 160
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=96.10 E-value=0.013 Score=48.06 Aligned_cols=40 Identities=23% Similarity=0.396 Sum_probs=36.5
Q ss_pred CccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCC
Q 027226 149 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS 188 (226)
Q Consensus 149 ~~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~ 188 (226)
-.+.|++|.|||-|.+|.+-++.|..+|++|+.+++...+
T Consensus 5 l~l~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~~ 44 (205)
T TIGR01470 5 ANLEGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEELES 44 (205)
T ss_pred EEcCCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCCH
Confidence 4689999999999999999999999999999999987653
No 161
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=96.05 E-value=0.0049 Score=54.36 Aligned_cols=45 Identities=27% Similarity=0.459 Sum_probs=38.6
Q ss_pred CCCCCCCCccCCCEEEEEcCChHHHHHHHHHccCCC-EEEEEcCCC
Q 027226 142 KLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSW 186 (226)
Q Consensus 142 ~w~~~~~~~l~gktvgIvG~G~IG~~vA~~l~afG~-~V~~~~r~~ 186 (226)
.|.......|++++|.|+|.|.+|..+|+.|...|. ++..+|+..
T Consensus 13 ~~G~~~Q~~L~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (338)
T PRK12475 13 GIGEEGQRKIREKHVLIVGAGALGAANAEALVRAGIGKLTIADRDY 58 (338)
T ss_pred hcCHHHHHhhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 355445578999999999999999999999999998 788898864
No 162
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=96.05 E-value=0.0038 Score=50.86 Aligned_cols=43 Identities=21% Similarity=0.440 Sum_probs=38.1
Q ss_pred CCCCCCCccCCCEEEEEcCChHHHHHHHHHccCCC-EEEEEcCC
Q 027226 143 LGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRS 185 (226)
Q Consensus 143 w~~~~~~~l~gktvgIvG~G~IG~~vA~~l~afG~-~V~~~~r~ 185 (226)
|.......|.+++|.|+|.|.+|.++|+.|...|+ ++..+|..
T Consensus 11 ~G~e~Q~~L~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d 54 (197)
T cd01492 11 WGLEAQKRLRSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDR 54 (197)
T ss_pred hCHHHHHHHHhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECC
Confidence 66555678999999999999999999999999999 58888875
No 163
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.01 E-value=0.02 Score=49.12 Aligned_cols=68 Identities=15% Similarity=0.197 Sum_probs=56.8
Q ss_pred CCccCCCEEEEEcCCh-HHHHHHHHHccCCCEEEEEcCCCCCCCcccChhhhcccCcEEEEe-ccCCccccccccc
Q 027226 148 GETLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSGWHCKQVISIF-NEKGFSSGEYCSR 221 (226)
Q Consensus 148 ~~~l~gktvgIvG~G~-IG~~vA~~l~afG~~V~~~~r~~~~~~~~~~l~ell~~sD~v~l~-~~~d~i~~~~~~~ 221 (226)
+.++.||++.|||-+. +|+-+|.+|..-|++|+.+.... .+|.+..++||+++.. ...+|+..++++.
T Consensus 152 ~i~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVtichs~T------~~l~~~~~~ADIvI~AvG~~~~i~~~~vk~ 221 (284)
T PRK14170 152 GTQIEGKRAVVIGRSNIVGKPVAQLLLNENATVTIAHSRT------KDLPQVAKEADILVVATGLAKFVKKDYIKP 221 (284)
T ss_pred CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC------CCHHHHHhhCCEEEEecCCcCccCHHHcCC
Confidence 5689999999999986 59999999999999998765432 2689999999999888 7778887777654
No 164
>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]
Probab=95.97 E-value=0.013 Score=52.50 Aligned_cols=39 Identities=36% Similarity=0.605 Sum_probs=35.9
Q ss_pred CccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCC
Q 027226 149 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA 187 (226)
Q Consensus 149 ~~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~ 187 (226)
..+.|+||.|=|+|++|+..|+.|...|++|+++|-+..
T Consensus 203 ~~l~G~rVaVQG~GNVg~~aa~~l~~~GAkvva~sds~g 241 (411)
T COG0334 203 DDLEGARVAVQGFGNVGQYAAEKLHELGAKVVAVSDSKG 241 (411)
T ss_pred CCcCCCEEEEECccHHHHHHHHHHHHcCCEEEEEEcCCC
Confidence 449999999999999999999999999999999988755
No 165
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.94 E-value=0.016 Score=53.07 Aligned_cols=34 Identities=15% Similarity=0.326 Sum_probs=31.0
Q ss_pred cCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCC
Q 027226 151 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRS 185 (226)
Q Consensus 151 l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~ 185 (226)
-.||+|+|+|+|.-|+++|+.|+. |++|+.+|..
T Consensus 4 ~~~~~v~v~G~G~sG~a~~~~L~~-g~~v~v~D~~ 37 (454)
T PRK01368 4 HTKQKIGVFGLGKTGISVYEELQN-KYDVIVYDDL 37 (454)
T ss_pred CCCCEEEEEeecHHHHHHHHHHhC-CCEEEEECCC
Confidence 358999999999999999999996 9999999954
No 166
>PLN02272 glyceraldehyde-3-phosphate dehydrogenase
Probab=95.92 E-value=0.0093 Score=53.84 Aligned_cols=32 Identities=22% Similarity=0.320 Sum_probs=27.7
Q ss_pred CEEEEEcCChHHHHHHHHHcc-CCCEEEEE-cCC
Q 027226 154 KTVFILGFGNIGVELAKRLRP-FGVKIIAT-KRS 185 (226)
Q Consensus 154 ktvgIvG~G~IG~~vA~~l~a-fG~~V~~~-~r~ 185 (226)
.+|||.|||+||+.++|.+.. ++++|++. |+.
T Consensus 86 ~kvgInGFGRIGR~v~R~~~~~~~i~vvaINdp~ 119 (421)
T PLN02272 86 TKIGINGFGRIGRLVLRIATSRDDIEVVAVNDPF 119 (421)
T ss_pred eEEEEECcCHHHHHHHHHHhhcCCcEEEEecCCC
Confidence 599999999999999999874 89999984 444
No 167
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.91 E-value=0.011 Score=53.52 Aligned_cols=57 Identities=19% Similarity=0.204 Sum_probs=41.8
Q ss_pred CCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCCCc--------ccChhhhcccCcEEEEec
Q 027226 153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQ--------VSCQSSGWHCKQVISIFN 209 (226)
Q Consensus 153 gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~~~--------~~~l~ell~~sD~v~l~~ 209 (226)
.++|.|+|+|.+|..+|+.|+..|.+|.++|++...... ....+.+...+|++++.+
T Consensus 3 ~~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvV~s~ 67 (418)
T PRK00683 3 LQRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSLEALQSCPYIHERYLENAEEFPEQVDLVVRSP 67 (418)
T ss_pred CCeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCccccchhHHHhhhhcCCcHHHhcCCCEEEECC
Confidence 478999999999999999999999999999986543210 011122345678877773
No 168
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=95.90 E-value=0.016 Score=43.55 Aligned_cols=54 Identities=20% Similarity=0.244 Sum_probs=39.2
Q ss_pred EEEEEcC-ChHHHHHHHHHcc-CCCEEE-EEcCCCCCC----------------CcccChhhhcccCcEEEEe
Q 027226 155 TVFILGF-GNIGVELAKRLRP-FGVKII-ATKRSWASH----------------SQVSCQSSGWHCKQVISIF 208 (226)
Q Consensus 155 tvgIvG~-G~IG~~vA~~l~a-fG~~V~-~~~r~~~~~----------------~~~~~l~ell~~sD~v~l~ 208 (226)
+|+|+|+ |++|+.+++.+.. =|+++. ++++...+. .-..++++++..+|++.-.
T Consensus 2 rV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v~~~l~~~~~~~DVvIDf 74 (124)
T PF01113_consen 2 RVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPVTDDLEELLEEADVVIDF 74 (124)
T ss_dssp EEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBEBS-HHHHTTH-SEEEEE
T ss_pred EEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcCCcccccchhHHHhcccCCEEEEc
Confidence 6999999 9999999999986 788844 456655111 1146788899889988765
No 169
>COG0540 PyrB Aspartate carbamoyltransferase, catalytic chain [Nucleotide transport and metabolism]
Probab=95.89 E-value=0.064 Score=46.40 Aligned_cols=127 Identities=14% Similarity=0.143 Sum_probs=83.1
Q ss_pred HHhcC-CCceEEEecCccCCccchhHHHhCCc-EEEecCCCCCCCchhHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCCC
Q 027226 70 CISRA-NQMKLIMQFGVGLEGVDINAATRCGI-KVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPT 147 (226)
Q Consensus 70 ~l~~~-~~Lk~I~~~~aG~d~id~~~~~~~gi-~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~ 147 (226)
.++.+ ++.=+|-....|+-++. +...++ +|.|+.+-+..|..+ ++.=++...+. .
T Consensus 97 tl~ayg~D~iViRH~~egaa~~~---a~~~~~~pvINaGDG~~qHPTQ----~LLDl~TI~~~----------------~ 153 (316)
T COG0540 97 TLSAYGVDAIVIRHPEEGAARLL---AEFSGVNPVINAGDGSHQHPTQ----ALLDLYTIREE----------------F 153 (316)
T ss_pred HHHhhCCCEEEEeCccccHHHHH---HHhcCCCceEECCCCCCCCccH----HHHHHHHHHHH----------------h
Confidence 44555 56666666666665543 233356 799998765433322 22222222221 1
Q ss_pred CCccCCCEEEEEc---CChHHHHHHHHHccCCCEEEEEcCCC-CC--C-----------CcccC-hhhhcccCcEEEEe-
Q 027226 148 GETLLGKTVFILG---FGNIGVELAKRLRPFGVKIIATKRSW-AS--H-----------SQVSC-QSSGWHCKQVISIF- 208 (226)
Q Consensus 148 ~~~l~gktvgIvG---~G~IG~~vA~~l~afG~~V~~~~r~~-~~--~-----------~~~~~-l~ell~~sD~v~l~- 208 (226)
| .+.|++|+|+| +|+.-+..++.|+.||++|..++|.. .+ . ....+ .+|.+.++|++-++
T Consensus 154 G-~~~gl~iaivGDlkhsRva~S~~~~L~~~ga~v~lvsP~~L~~p~~i~~~l~~~~~~~~~~~~~e~~i~~~DVl~~lR 232 (316)
T COG0540 154 G-RLDGLKIAIVGDLKHSRVAHSNIQALKRFGAEVYLVSPETLLPPEYILEELEEKGGVVVEHDSDEEVIEEADVLYMLR 232 (316)
T ss_pred C-CcCCcEEEEEccccchHHHHHHHHHHHHcCCEEEEECchHhCCchhHHHHHhhcCceEEEecchhhhhccCCEEEeeh
Confidence 2 39999999999 89999999999999999999999842 11 1 01233 44599999999998
Q ss_pred -ccCCcccccccc
Q 027226 209 -NEKGFSSGEYCS 220 (226)
Q Consensus 209 -~~~d~i~~~~~~ 220 (226)
++..+-+..++|
T Consensus 233 vQ~ER~~~~~~~s 245 (316)
T COG0540 233 VQKERFNDPEEYS 245 (316)
T ss_pred hhHhhcCCccchH
Confidence 666676666666
No 170
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=95.89 E-value=0.026 Score=48.20 Aligned_cols=68 Identities=21% Similarity=0.215 Sum_probs=57.6
Q ss_pred CCccCCCEEEEEcCChH-HHHHHHHHccCCCEEEEEcCCCCCCCcccChhhhcccCcEEEEe-ccCCccccccccc
Q 027226 148 GETLLGKTVFILGFGNI-GVELAKRLRPFGVKIIATKRSWASHSQVSCQSSGWHCKQVISIF-NEKGFSSGEYCSR 221 (226)
Q Consensus 148 ~~~l~gktvgIvG~G~I-G~~vA~~l~afG~~V~~~~r~~~~~~~~~~l~ell~~sD~v~l~-~~~d~i~~~~~~~ 221 (226)
+.+++||++.|||-++| |+-+|.+|..-+++|.....+. .++.+..++||+++.. ...+|+..++.+-
T Consensus 151 ~i~l~Gk~~vVVGrS~iVGkPla~lL~~~naTVtvcHs~T------~~l~~~~k~ADIvv~AvG~p~~i~~d~vk~ 220 (283)
T COG0190 151 GIDLRGKNVVVVGRSNIVGKPLALLLLNANATVTVCHSRT------KDLASITKNADIVVVAVGKPHFIKADMVKP 220 (283)
T ss_pred CCCCCCCEEEEECCCCcCcHHHHHHHHhCCCEEEEEcCCC------CCHHHHhhhCCEEEEecCCccccccccccC
Confidence 45899999999999986 9999999999999999987653 3789999999999887 7777777666554
No 171
>PRK08328 hypothetical protein; Provisional
Probab=95.88 E-value=0.0083 Score=50.04 Aligned_cols=43 Identities=30% Similarity=0.479 Sum_probs=37.2
Q ss_pred CCCCCCCccCCCEEEEEcCChHHHHHHHHHccCCC-EEEEEcCC
Q 027226 143 LGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRS 185 (226)
Q Consensus 143 w~~~~~~~l~gktvgIvG~G~IG~~vA~~l~afG~-~V~~~~r~ 185 (226)
|.......|.+++|.|+|.|.+|.++|+.|...|. +++.+|..
T Consensus 17 ~g~~~q~~L~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D 60 (231)
T PRK08328 17 FGVEGQEKLKKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQ 60 (231)
T ss_pred cCHHHHHHHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 65545678999999999999999999999999998 58888764
No 172
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.88 E-value=0.026 Score=48.72 Aligned_cols=68 Identities=12% Similarity=0.121 Sum_probs=57.5
Q ss_pred CCccCCCEEEEEcCCh-HHHHHHHHHccCCCEEEEEcCCCCCCCcccChhhhcccCcEEEEe-ccCCccccccccc
Q 027226 148 GETLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSGWHCKQVISIF-NEKGFSSGEYCSR 221 (226)
Q Consensus 148 ~~~l~gktvgIvG~G~-IG~~vA~~l~afG~~V~~~~r~~~~~~~~~~l~ell~~sD~v~l~-~~~d~i~~~~~~~ 221 (226)
+.++.||++.|||-+. +|+-+|.+|..-|+.|+.+.... .+|.+..++||+++.. ....|+..++++.
T Consensus 155 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVt~chs~T------~~l~~~~~~ADIvVsAvGkp~~i~~~~ik~ 224 (294)
T PRK14187 155 TRNLSGSDAVVIGRSNIVGKPMACLLLGENCTVTTVHSAT------RDLADYCSKADILVAAVGIPNFVKYSWIKK 224 (294)
T ss_pred CCCCCCCEEEEECCCccchHHHHHHHhhCCCEEEEeCCCC------CCHHHHHhhCCEEEEccCCcCccCHHHcCC
Confidence 4689999999999986 69999999999999999876542 2689999999999888 7778887777664
No 173
>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]
Probab=95.87 E-value=0.0072 Score=52.89 Aligned_cols=56 Identities=27% Similarity=0.294 Sum_probs=42.2
Q ss_pred CCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC----C---cccChhhhc-ccCcEEEEe
Q 027226 153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH----S---QVSCQSSGW-HCKQVISIF 208 (226)
Q Consensus 153 gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~----~---~~~~l~ell-~~sD~v~l~ 208 (226)
-++|||||||+.|+-.|+.+..-|-.|+..||+.-++ + ....+.+++ +.+|++-+.
T Consensus 52 tl~IaIIGfGnmGqflAetli~aGh~li~hsRsdyssaa~~yg~~~ft~lhdlcerhpDvvLlc 115 (480)
T KOG2380|consen 52 TLVIAIIGFGNMGQFLAETLIDAGHGLICHSRSDYSSAAEKYGSAKFTLLHDLCERHPDVVLLC 115 (480)
T ss_pred ceEEEEEecCcHHHHHHHHHHhcCceeEecCcchhHHHHHHhcccccccHHHHHhcCCCEEEEE
Confidence 3789999999999999999999999999999975332 1 233444444 566766555
No 174
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=95.86 E-value=0.0051 Score=52.85 Aligned_cols=38 Identities=24% Similarity=0.319 Sum_probs=34.4
Q ss_pred ccCCCEEEEEcCChHHHHHHHHHccCCC-EEEEEcCCCC
Q 027226 150 TLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWA 187 (226)
Q Consensus 150 ~l~gktvgIvG~G~IG~~vA~~l~afG~-~V~~~~r~~~ 187 (226)
.+.++++.|+|.|..|++++..|...|+ +|+.++|+..
T Consensus 122 ~~~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~~ 160 (282)
T TIGR01809 122 PLAGFRGLVIGAGGTSRAAVYALASLGVTDITVINRNPD 160 (282)
T ss_pred ccCCceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCHH
Confidence 4678999999999999999999999998 6999999754
No 175
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.85 E-value=0.013 Score=53.25 Aligned_cols=36 Identities=25% Similarity=0.386 Sum_probs=33.8
Q ss_pred cCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCC
Q 027226 151 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW 186 (226)
Q Consensus 151 l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~ 186 (226)
+.||++.|+|.|.+|.++|+.|+..|++|+++|+..
T Consensus 3 ~~~k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~ 38 (447)
T PRK02472 3 YQNKKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKP 38 (447)
T ss_pred cCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 678999999999999999999999999999999764
No 176
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.84 E-value=0.012 Score=50.68 Aligned_cols=34 Identities=24% Similarity=0.298 Sum_probs=31.5
Q ss_pred CEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCC
Q 027226 154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA 187 (226)
Q Consensus 154 ktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~ 187 (226)
++|+|||.|.+|..+|..+..-|.+|+.||++..
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~ 38 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSAD 38 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence 6899999999999999999999999999999743
No 177
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.83 E-value=0.026 Score=48.47 Aligned_cols=68 Identities=18% Similarity=0.127 Sum_probs=57.0
Q ss_pred CCccCCCEEEEEcCCh-HHHHHHHHHccCCCEEEEEcCCCCCCCcccChhhhcccCcEEEEe-ccCCccccccccc
Q 027226 148 GETLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSGWHCKQVISIF-NEKGFSSGEYCSR 221 (226)
Q Consensus 148 ~~~l~gktvgIvG~G~-IG~~vA~~l~afG~~V~~~~r~~~~~~~~~~l~ell~~sD~v~l~-~~~d~i~~~~~~~ 221 (226)
+.++.||++.|||-+. +|+-+|.+|..-|+.|+.+..+. .+|.+..++||+++.. ...+|+..++++.
T Consensus 152 ~i~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVt~chs~T------~nl~~~~~~ADIvIsAvGkp~~i~~~~vk~ 221 (282)
T PRK14166 152 EIDLEGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIKT------KDLSLYTRQADLIIVAAGCVNLLRSDMVKE 221 (282)
T ss_pred CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC------CCHHHHHhhCCEEEEcCCCcCccCHHHcCC
Confidence 4689999999999986 69999999998999999876542 3689999999999888 7778887776654
No 178
>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP.
Probab=95.81 E-value=0.014 Score=51.50 Aligned_cols=53 Identities=30% Similarity=0.273 Sum_probs=41.8
Q ss_pred EEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC----------CcccC---hhhhcccCcEEEE
Q 027226 155 TVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH----------SQVSC---QSSGWHCKQVISI 207 (226)
Q Consensus 155 tvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~----------~~~~~---l~ell~~sD~v~l 207 (226)
||||||-|.+|+.+++.++.+|++|+.+++.+... ....+ +.++...+|+++.
T Consensus 1 ~igiiG~gql~~~l~~aa~~lG~~v~~~d~~~~~p~~~~ad~~~~~~~~d~~~i~~~a~~~dvit~ 66 (352)
T TIGR01161 1 TVGILGGGQLGRMLALAARPLGIKVHVLDPDANSPAVQVADHVVLAPFFDPAAIRELAESCDVITF 66 (352)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCEEEEECCCCCCChhHhCceeEeCCCCCHHHHHHHHhhCCEEEe
Confidence 69999999999999999999999999999875433 01222 5667778888753
No 179
>PF00044 Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; InterPro: IPR020828 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) plays an important role in glycolysis and gluconeogenesis [] by reversibly catalysing the oxidation and phosphorylation of D-glyceraldehyde-3-phosphate to 1,3-diphospho-glycerate. The enzyme exists as a tetramer of identical subunits, each containing 2 conserved functional domains: an NAD-binding domain, and a highly conserved catalytic domain []. The enzyme has been found to bind to actin and tropomyosin, and may thus have a role in cytoskeleton assembly. Alternatively, the cytoskeleton may provide a framework for precise positioning of the glycolytic enzymes, thus permitting efficient passage of metabolites from enzyme to enzyme []. GAPDH displays diverse non-glycolytic functions as well, its role depending upon its subcellular location. For instance, the translocation of GAPDH to the nucleus acts as a signalling mechanism for programmed cell death, or apoptosis []. The accumulation of GAPDH within the nucleus is involved in the induction of apoptosis, where GAPDH functions in the activation of transcription. The presence of GAPDH is associated with the synthesis of pro-apoptotic proteins like BAX, c-JUN and GAPDH itself. GAPDH has been implicated in certain neurological diseases: GAPDH is able to bind to the gene products from neurodegenerative disorders such as Huntington's disease, Alzheimer's disease, Parkinson's disease and Machado-Joseph disease through stretches encoded by their CAG repeats. Abnormal neuronal apoptosis is associated with these diseases. Propargylamines such as deprenyl increase neuronal survival by interfering with apoptosis signalling pathways via their binding to GAPDH, which decreases the synthesis of pro-apoptotic proteins []. This entry represents the N-terminal domain which is a Rossmann NAD(P) binding fold.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2G82_Q 1CER_R 1ZNQ_Q 3GPD_G 1U8F_R 3DOC_B 2YYY_A 1GPD_G 4GPD_1 2I5P_O ....
Probab=95.78 E-value=0.013 Score=45.70 Aligned_cols=32 Identities=25% Similarity=0.320 Sum_probs=27.3
Q ss_pred EEEEEcCChHHHHHHHHHc-cCCCEEEEEcCCC
Q 027226 155 TVFILGFGNIGVELAKRLR-PFGVKIIATKRSW 186 (226)
Q Consensus 155 tvgIvG~G~IG~~vA~~l~-afG~~V~~~~r~~ 186 (226)
+|||-|||+|||.++|.+. .-.++|.+++-..
T Consensus 2 kVgINGfGRIGR~v~r~~~~~~~~evvaInd~~ 34 (151)
T PF00044_consen 2 KVGINGFGRIGRLVLRAALDQPDIEVVAINDPA 34 (151)
T ss_dssp EEEEESTSHHHHHHHHHHHTSTTEEEEEEEESS
T ss_pred EEEEECCCcccHHHHHhhcccceEEEEEEeccc
Confidence 7999999999999999997 6678988886543
No 180
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.76 E-value=0.03 Score=48.42 Aligned_cols=68 Identities=13% Similarity=0.092 Sum_probs=56.5
Q ss_pred CCccCCCEEEEEcCCh-HHHHHHHHHccCCCEEEEEcCCCCCCCcccChhhhcccCcEEEEe-ccCCccccccccc
Q 027226 148 GETLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSGWHCKQVISIF-NEKGFSSGEYCSR 221 (226)
Q Consensus 148 ~~~l~gktvgIvG~G~-IG~~vA~~l~afG~~V~~~~r~~~~~~~~~~l~ell~~sD~v~l~-~~~d~i~~~~~~~ 221 (226)
+.++.||++.|||-+. +|+-+|.+|..-|++|+.+.... .+|.+..++||+++.. ....|+..++++.
T Consensus 153 ~i~l~Gk~vvVIGrS~iVGkPla~lL~~~~atVtv~hs~T------~~l~~~~~~ADIvIsAvGkp~~i~~~~ik~ 222 (297)
T PRK14186 153 QIDIAGKKAVVVGRSILVGKPLALMLLAANATVTIAHSRT------QDLASITREADILVAAAGRPNLIGAEMVKP 222 (297)
T ss_pred CCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCC------CCHHHHHhhCCEEEEccCCcCccCHHHcCC
Confidence 4689999999999986 69999999999999998875432 2789999999999987 7777777776654
No 181
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.74 E-value=0.012 Score=50.74 Aligned_cols=35 Identities=20% Similarity=0.324 Sum_probs=32.2
Q ss_pred CEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCC
Q 027226 154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS 188 (226)
Q Consensus 154 ktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~ 188 (226)
++|||||.|.+|..+|..+...|.+|+.||+++..
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~ 40 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEEL 40 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHH
Confidence 48999999999999999999999999999998654
No 182
>PRK06141 ornithine cyclodeaminase; Validated
Probab=95.74 E-value=0.015 Score=50.77 Aligned_cols=58 Identities=16% Similarity=0.055 Sum_probs=43.9
Q ss_pred CCCEEEEEcCChHHHHHHHHHc-cCC-CEEEEEcCCCCCC------C--------cccChhhhcccCcEEEEec
Q 027226 152 LGKTVFILGFGNIGVELAKRLR-PFG-VKIIATKRSWASH------S--------QVSCQSSGWHCKQVISIFN 209 (226)
Q Consensus 152 ~gktvgIvG~G~IG~~vA~~l~-afG-~~V~~~~r~~~~~------~--------~~~~l~ell~~sD~v~l~~ 209 (226)
..++|+|+|.|..|+..++.+. .++ -+|..|+|++... . ...+.++.+..+|+|+...
T Consensus 124 ~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~~g~~~~~~~~~~~av~~aDIVi~aT 197 (314)
T PRK06141 124 DASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRAQGFDAEVVTDLEAAVRQADIISCAT 197 (314)
T ss_pred CCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhcCCceEEeCCHHHHHhcCCEEEEee
Confidence 4689999999999999998554 355 4799999986542 0 1245677889999997763
No 183
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.74 E-value=0.032 Score=47.92 Aligned_cols=68 Identities=15% Similarity=0.145 Sum_probs=56.5
Q ss_pred CCccCCCEEEEEcCCh-HHHHHHHHHccCCCEEEEEcCCCCCCCcccChhhhcccCcEEEEe-ccCCccccccccc
Q 027226 148 GETLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSGWHCKQVISIF-NEKGFSSGEYCSR 221 (226)
Q Consensus 148 ~~~l~gktvgIvG~G~-IG~~vA~~l~afG~~V~~~~r~~~~~~~~~~l~ell~~sD~v~l~-~~~d~i~~~~~~~ 221 (226)
+.++.||++.|||-+. +|+-+|.+|..-|+.|+...... .+|.+..++||+++.. ....|+..++++.
T Consensus 151 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~atVtichs~T------~~l~~~~~~ADIvI~AvG~p~~i~~~~vk~ 220 (282)
T PRK14169 151 DIDVAGKRVVIVGRSNIVGRPLAGLMVNHDATVTIAHSKT------RNLKQLTKEADILVVAVGVPHFIGADAVKP 220 (282)
T ss_pred CCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEECCCC------CCHHHHHhhCCEEEEccCCcCccCHHHcCC
Confidence 4689999999999986 69999999999999998775432 2689999999999888 7777887777654
No 184
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.72 E-value=0.014 Score=54.09 Aligned_cols=36 Identities=25% Similarity=0.397 Sum_probs=33.2
Q ss_pred ccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCC
Q 027226 150 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRS 185 (226)
Q Consensus 150 ~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~ 185 (226)
.+.|++|.|+|+|.+|.+.++.|+..|++|+++|+.
T Consensus 9 ~~~~~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~ 44 (488)
T PRK03369 9 LLPGAPVLVAGAGVTGRAVLAALTRFGARPTVCDDD 44 (488)
T ss_pred ccCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 346899999999999999999999999999999965
No 185
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.70 E-value=0.016 Score=52.79 Aligned_cols=37 Identities=41% Similarity=0.602 Sum_probs=34.6
Q ss_pred ccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCC
Q 027226 150 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW 186 (226)
Q Consensus 150 ~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~ 186 (226)
.+.+|++.|+|.|.+|.++|+.|...|++|+++|+..
T Consensus 2 ~~~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 2 ELKGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 3678999999999999999999999999999999975
No 186
>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....
Probab=95.70 E-value=0.013 Score=49.26 Aligned_cols=34 Identities=44% Similarity=0.742 Sum_probs=32.4
Q ss_pred CccCCCEEEEEcCChHHHHHHHHHccCCCEEEEE
Q 027226 149 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIAT 182 (226)
Q Consensus 149 ~~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~ 182 (226)
.++.|+|+.|-|+|.+|+.+|+.|...|++|+++
T Consensus 28 ~~l~g~~v~IqGfG~VG~~~a~~l~~~Ga~vv~v 61 (244)
T PF00208_consen 28 DSLEGKRVAIQGFGNVGSHAARFLAELGAKVVAV 61 (244)
T ss_dssp HSSTTCEEEEEESSHHHHHHHHHHHHTTEEEEEE
T ss_pred CCcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEE
Confidence 4699999999999999999999999999999998
No 187
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.67 E-value=0.032 Score=47.79 Aligned_cols=68 Identities=16% Similarity=0.217 Sum_probs=57.0
Q ss_pred CCccCCCEEEEEcCCh-HHHHHHHHHccCCCEEEEEcCCCCCCCcccChhhhcccCcEEEEe-ccCCccccccccc
Q 027226 148 GETLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSGWHCKQVISIF-NEKGFSSGEYCSR 221 (226)
Q Consensus 148 ~~~l~gktvgIvG~G~-IG~~vA~~l~afG~~V~~~~r~~~~~~~~~~l~ell~~sD~v~l~-~~~d~i~~~~~~~ 221 (226)
+.++.||++.|||-+. +|+-+|.+|..-|++|+.+..+. .+|.+..++||+++.. ...+|+..++++.
T Consensus 153 ~i~l~Gk~vvViGrS~~VGkPla~lL~~~~AtVt~chs~T------~~l~~~~~~ADIvIsAvGkp~~i~~~~ik~ 222 (278)
T PRK14172 153 NIDIEGKEVVVIGRSNIVGKPVAQLLLNENATVTICHSKT------KNLKEVCKKADILVVAIGRPKFIDEEYVKE 222 (278)
T ss_pred CCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCC------CCHHHHHhhCCEEEEcCCCcCccCHHHcCC
Confidence 4589999999999986 69999999999999998886542 2689999999999888 7778887777654
No 188
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.67 E-value=0.034 Score=47.75 Aligned_cols=68 Identities=16% Similarity=0.195 Sum_probs=57.3
Q ss_pred CCccCCCEEEEEcCCh-HHHHHHHHHccCCCEEEEEcCCCCCCCcccChhhhcccCcEEEEe-ccCCccccccccc
Q 027226 148 GETLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSGWHCKQVISIF-NEKGFSSGEYCSR 221 (226)
Q Consensus 148 ~~~l~gktvgIvG~G~-IG~~vA~~l~afG~~V~~~~r~~~~~~~~~~l~ell~~sD~v~l~-~~~d~i~~~~~~~ 221 (226)
+.++.||++.|||-+. +|+-+|.+|..-|+.|+....+. .+|.+..++||+++.. ....|+..++++.
T Consensus 154 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~atVt~chs~T------~~l~~~~~~ADIvIsAvGk~~~i~~~~ik~ 223 (284)
T PRK14177 154 GIDVTGKNAVVVGRSPILGKPMAMLLTEMNATVTLCHSKT------QNLPSIVRQADIIVGAVGKPEFIKADWISE 223 (284)
T ss_pred CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC------CCHHHHHhhCCEEEEeCCCcCccCHHHcCC
Confidence 5689999999999986 69999999999999999886542 2689999999999887 7778887777654
No 189
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.66 E-value=0.012 Score=50.34 Aligned_cols=34 Identities=21% Similarity=0.300 Sum_probs=31.2
Q ss_pred CEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCC
Q 027226 154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA 187 (226)
Q Consensus 154 ktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~ 187 (226)
++|+|||.|.+|..+|..+...|.+|+.+|+++.
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~ 37 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDA 37 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCCceEEEeCCHH
Confidence 5899999999999999999999999999997653
No 190
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=95.65 E-value=0.0079 Score=53.08 Aligned_cols=44 Identities=32% Similarity=0.459 Sum_probs=38.4
Q ss_pred CCCCCCCCccCCCEEEEEcCChHHHHHHHHHccCCC-EEEEEcCC
Q 027226 142 KLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRS 185 (226)
Q Consensus 142 ~w~~~~~~~l~gktvgIvG~G~IG~~vA~~l~afG~-~V~~~~r~ 185 (226)
.|.......|..++|.|+|.|.+|..+|+.|...|. +|..+|..
T Consensus 13 ~~G~~~Q~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D 57 (339)
T PRK07688 13 PIGEEGQQKLREKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRD 57 (339)
T ss_pred hcCHHHHHHhcCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 455444578999999999999999999999999999 89999985
No 191
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.64 E-value=0.015 Score=53.29 Aligned_cols=37 Identities=32% Similarity=0.458 Sum_probs=34.3
Q ss_pred ccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCC
Q 027226 150 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW 186 (226)
Q Consensus 150 ~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~ 186 (226)
.+.|++|.|+|+|.+|..+|+.|+..|.+|.++|...
T Consensus 6 ~~~~~~i~viG~G~~G~~~a~~l~~~G~~v~~~D~~~ 42 (460)
T PRK01390 6 GFAGKTVAVFGLGGSGLATARALVAGGAEVIAWDDNP 42 (460)
T ss_pred ccCCCEEEEEeecHhHHHHHHHHHHCCCEEEEECCCh
Confidence 4778999999999999999999999999999999764
No 192
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.59 E-value=0.038 Score=47.48 Aligned_cols=68 Identities=13% Similarity=0.173 Sum_probs=56.9
Q ss_pred CCccCCCEEEEEcCCh-HHHHHHHHHccCCCEEEEEcCCCCCCCcccChhhhcccCcEEEEe-ccCCccccccccc
Q 027226 148 GETLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSGWHCKQVISIF-NEKGFSSGEYCSR 221 (226)
Q Consensus 148 ~~~l~gktvgIvG~G~-IG~~vA~~l~afG~~V~~~~r~~~~~~~~~~l~ell~~sD~v~l~-~~~d~i~~~~~~~ 221 (226)
+.++.||++.|||-+. +|+-+|.+|..-|++|+...... .+|.+..++||+++.. ....|+..++++.
T Consensus 153 ~i~l~Gk~vvViGrS~~VGkPla~lL~~~~ATVt~chs~T------~dl~~~~k~ADIvIsAvGkp~~i~~~~vk~ 222 (282)
T PRK14180 153 GIKTEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFT------TDLKSHTTKADILIVAVGKPNFITADMVKE 222 (282)
T ss_pred CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEEcCCC------CCHHHHhhhcCEEEEccCCcCcCCHHHcCC
Confidence 5689999999999986 69999999998899999886542 2788999999999888 7777877776653
No 193
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.58 E-value=0.039 Score=47.48 Aligned_cols=68 Identities=19% Similarity=0.179 Sum_probs=56.5
Q ss_pred CCccCCCEEEEEcCCh-HHHHHHHHHccCCCEEEEEcCCCCCCCcccChhhhcccCcEEEEe-ccCCccccccccc
Q 027226 148 GETLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSGWHCKQVISIF-NEKGFSSGEYCSR 221 (226)
Q Consensus 148 ~~~l~gktvgIvG~G~-IG~~vA~~l~afG~~V~~~~r~~~~~~~~~~l~ell~~sD~v~l~-~~~d~i~~~~~~~ 221 (226)
+.++.||++.|||-+. +|+-+|.+|..-|+.|+.+..+. .+|.+..++||+++.. ....|+..++++.
T Consensus 150 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVtichs~T------~~l~~~~~~ADIvIsAvGkp~~i~~~~vk~ 219 (287)
T PRK14173 150 GIPLAGKEVVVVGRSNIVGKPLAALLLREDATVTLAHSKT------QDLPAVTRRADVLVVAVGRPHLITPEMVRP 219 (287)
T ss_pred CCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEeCCCC------CCHHHHHhhCCEEEEecCCcCccCHHHcCC
Confidence 4689999999999875 69999999999999998775542 2689999999999888 7778887777653
No 194
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=95.57 E-value=0.014 Score=52.28 Aligned_cols=55 Identities=16% Similarity=0.224 Sum_probs=44.6
Q ss_pred CEEEEEcCChHHHHHHHHHccCC-CEEEEEcCCCCCC------------------CcccChhhhcccCcEEEEe
Q 027226 154 KTVFILGFGNIGVELAKRLRPFG-VKIIATKRSWASH------------------SQVSCQSSGWHCKQVISIF 208 (226)
Q Consensus 154 ktvgIvG~G~IG~~vA~~l~afG-~~V~~~~r~~~~~------------------~~~~~l~ell~~sD~v~l~ 208 (226)
++|.|+|.|.||+.+|..|..-| .+|+..||+.... .+.+.+.++++..|+|...
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~~~d~VIn~ 75 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAADVDALVALIKDFDLVINA 75 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEecccChHHHHHHHhcCCEEEEe
Confidence 68999999999999999999888 9999999984321 1244577888888887766
No 195
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=95.56 E-value=0.035 Score=47.02 Aligned_cols=55 Identities=18% Similarity=0.219 Sum_probs=40.8
Q ss_pred CEEEEEcC-ChHHHHHHHHHccC-CCEEEE-EcCCCCCC--------CcccChhhhcccCcEEEEe
Q 027226 154 KTVFILGF-GNIGVELAKRLRPF-GVKIIA-TKRSWASH--------SQVSCQSSGWHCKQVISIF 208 (226)
Q Consensus 154 ktvgIvG~-G~IG~~vA~~l~af-G~~V~~-~~r~~~~~--------~~~~~l~ell~~sD~v~l~ 208 (226)
.+|+|+|+ |++|+.+++.+... ++++.+ +++.+... ....++++++...|+++..
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~~~~~~i~~~~dl~~ll~~~DvVid~ 67 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVGQGALGVAITDDLEAVLADADVLIDF 67 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccccCCCCccccCCHHHhccCCCEEEEC
Confidence 37999998 99999999998854 788766 66654321 1246788888888888755
No 196
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.54 E-value=0.018 Score=53.33 Aligned_cols=36 Identities=25% Similarity=0.487 Sum_probs=33.5
Q ss_pred cCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCC
Q 027226 151 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW 186 (226)
Q Consensus 151 l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~ 186 (226)
+.+++|+|+|+|.+|..+|+.|+..|.+|.++|...
T Consensus 5 ~~~~~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~ 40 (498)
T PRK02006 5 LQGPMVLVLGLGESGLAMARWCARHGARLRVADTRE 40 (498)
T ss_pred cCCCEEEEEeecHhHHHHHHHHHHCCCEEEEEcCCC
Confidence 568999999999999999999999999999999754
No 197
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.53 E-value=0.021 Score=52.57 Aligned_cols=39 Identities=21% Similarity=0.308 Sum_probs=35.2
Q ss_pred CCccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCC
Q 027226 148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW 186 (226)
Q Consensus 148 ~~~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~ 186 (226)
+..+.+++|.|+|.|.+|.++|+.|+..|.+|.++++..
T Consensus 11 ~~~~~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~ 49 (480)
T PRK01438 11 HSDWQGLRVVVAGLGVSGFAAADALLELGARVTVVDDGD 49 (480)
T ss_pred ccCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 346788999999999999999999999999999999764
No 198
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=95.53 E-value=0.041 Score=47.60 Aligned_cols=68 Identities=13% Similarity=0.182 Sum_probs=56.0
Q ss_pred CCccCCCEEEEEcCCh-HHHHHHHHHccCCCEEEEEcCCCCCCCcccChhhhcccCcEEEEe-ccCCccccccccc
Q 027226 148 GETLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSGWHCKQVISIF-NEKGFSSGEYCSR 221 (226)
Q Consensus 148 ~~~l~gktvgIvG~G~-IG~~vA~~l~afG~~V~~~~r~~~~~~~~~~l~ell~~sD~v~l~-~~~d~i~~~~~~~ 221 (226)
+.++.||++.|||-+. +|+-+|.+|..-|++|+.+.... .++++..++||+++.. ....++..++++.
T Consensus 162 ~i~l~Gk~vvVIGRS~iVGkPla~lL~~~~ATVtvchs~T------~nl~~~~~~ADIvv~AvGk~~~i~~~~vk~ 231 (299)
T PLN02516 162 GIPIKGKKAVVVGRSNIVGLPVSLLLLKADATVTVVHSRT------PDPESIVREADIVIAAAGQAMMIKGDWIKP 231 (299)
T ss_pred CCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCC------CCHHHHHhhCCEEEEcCCCcCccCHHHcCC
Confidence 5689999999999986 59999999998899999885532 3689999999999988 5667776666654
No 199
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=95.52 E-value=0.011 Score=54.37 Aligned_cols=32 Identities=19% Similarity=0.355 Sum_probs=30.1
Q ss_pred EEEEcCChHHHHHHHHHccCCCEEEEEcCCCC
Q 027226 156 VFILGFGNIGVELAKRLRPFGVKIIATKRSWA 187 (226)
Q Consensus 156 vgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~ 187 (226)
|||||+|.+|+.+|+.|..-|.+|++|+|++.
T Consensus 2 IG~IGLG~MG~~mA~nL~~~G~~V~v~drt~~ 33 (467)
T TIGR00873 2 IGVIGLAVMGSNLALNMADHGFTVSVYNRTPE 33 (467)
T ss_pred EEEEeeHHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence 89999999999999999999999999999754
No 200
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=95.52 E-value=0.019 Score=46.92 Aligned_cols=38 Identities=32% Similarity=0.424 Sum_probs=35.0
Q ss_pred CCccCCCEEEEEcCChHHHHHHHHHccCCC-EEEEEcCC
Q 027226 148 GETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRS 185 (226)
Q Consensus 148 ~~~l~gktvgIvG~G~IG~~vA~~l~afG~-~V~~~~r~ 185 (226)
...|..++|+|+|.|.+|..+|..|...|. +++.+|+.
T Consensus 16 q~~L~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 16 VQKLEQATVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred HHHHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 467899999999999999999999999999 69999987
No 201
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=95.52 E-value=0.025 Score=53.41 Aligned_cols=61 Identities=15% Similarity=0.087 Sum_probs=47.5
Q ss_pred CCccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC----------CcccC---hhhhcccCcEEEEe
Q 027226 148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH----------SQVSC---QSSGWHCKQVISIF 208 (226)
Q Consensus 148 ~~~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~----------~~~~~---l~ell~~sD~v~l~ 208 (226)
......|||||||-|..|+.++..++.+|++|+.+++.+... .++.+ +.++...+|+++..
T Consensus 17 ~~~~~~k~IgIIGgGqlg~mla~aA~~lG~~Vi~ld~~~~apa~~~AD~~~v~~~~D~~~l~~~a~~~dvIt~e 90 (577)
T PLN02948 17 VHGVSETVVGVLGGGQLGRMLCQAASQMGIKVKVLDPLEDCPASSVAARHVVGSFDDRAAVREFAKRCDVLTVE 90 (577)
T ss_pred ccCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhCceeeeCCCCCHHHHHHHHHHCCEEEEe
Confidence 345889999999999999999999999999999999876432 11223 45566778887654
No 202
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.52 E-value=0.019 Score=52.85 Aligned_cols=38 Identities=21% Similarity=0.326 Sum_probs=35.1
Q ss_pred CccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCC
Q 027226 149 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW 186 (226)
Q Consensus 149 ~~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~ 186 (226)
..+.+++|.|+|+|..|+++|+.|+..|++|.++|+..
T Consensus 11 ~~~~~~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~ 48 (473)
T PRK00141 11 PQELSGRVLVAGAGVSGRGIAAMLSELGCDVVVADDNE 48 (473)
T ss_pred ccccCCeEEEEccCHHHHHHHHHHHHCCCEEEEECCCh
Confidence 56788999999999999999999999999999999753
No 203
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.49 E-value=0.04 Score=47.42 Aligned_cols=68 Identities=21% Similarity=0.173 Sum_probs=56.3
Q ss_pred CCccCCCEEEEEcCCh-HHHHHHHHHccCCCEEEEEcCCCCCCCcccChhhhcccCcEEEEe-ccCCccccccccc
Q 027226 148 GETLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSGWHCKQVISIF-NEKGFSSGEYCSR 221 (226)
Q Consensus 148 ~~~l~gktvgIvG~G~-IG~~vA~~l~afG~~V~~~~r~~~~~~~~~~l~ell~~sD~v~l~-~~~d~i~~~~~~~ 221 (226)
+.++.||++.|||-+. +|+-+|.+|..-|+.|+....+ ..+|.+..++||+++.. ....+|..++++.
T Consensus 154 ~i~l~GK~vvViGrS~iVGkPla~lL~~~~ATVtichs~------T~~L~~~~~~ADIvV~AvGkp~~i~~~~vk~ 223 (288)
T PRK14171 154 EPNLTGKNVVIIGRSNIVGKPLSALLLKENCSVTICHSK------THNLSSITSKADIVVAAIGSPLKLTAEYFNP 223 (288)
T ss_pred CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC------CCCHHHHHhhCCEEEEccCCCCccCHHHcCC
Confidence 4589999999999986 5999999999889999876543 23689999999999987 7777887777654
No 204
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=95.47 E-value=0.036 Score=48.41 Aligned_cols=56 Identities=18% Similarity=0.197 Sum_probs=42.1
Q ss_pred CCCEEEEEcCChHHHHHHHHHccCCC--EEEEEcCCCCCC-------C-----------cccChhhhcccCcEEEEe
Q 027226 152 LGKTVFILGFGNIGVELAKRLRPFGV--KIIATKRSWASH-------S-----------QVSCQSSGWHCKQVISIF 208 (226)
Q Consensus 152 ~gktvgIvG~G~IG~~vA~~l~afG~--~V~~~~r~~~~~-------~-----------~~~~l~ell~~sD~v~l~ 208 (226)
.+++|+|+|.|+||..+|-.+...|. ++..+|+..... . ...+. +.++.||++++.
T Consensus 5 ~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~~~~-~~~~~adivIit 80 (315)
T PRK00066 5 QHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYAGDY-SDCKDADLVVIT 80 (315)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEEeCCH-HHhCCCCEEEEe
Confidence 56799999999999999999987787 799999864432 0 01122 446888888886
No 205
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=95.45 E-value=0.0099 Score=49.70 Aligned_cols=55 Identities=13% Similarity=0.277 Sum_probs=40.9
Q ss_pred CEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC--------CcccChhhh---cccCcEEEEe
Q 027226 154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH--------SQVSCQSSG---WHCKQVISIF 208 (226)
Q Consensus 154 ktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~--------~~~~~l~el---l~~sD~v~l~ 208 (226)
.++|.||+|+.|..+.++|..-|-+|++||+++... ....+|+++ |+..-+|.+-
T Consensus 1 M~iGmiGLGrMG~n~v~rl~~~ghdvV~yD~n~~av~~~~~~ga~~a~sl~el~~~L~~pr~vWlM 66 (300)
T COG1023 1 MQIGMIGLGRMGANLVRRLLDGGHDVVGYDVNQTAVEELKDEGATGAASLDELVAKLSAPRIVWLM 66 (300)
T ss_pred CcceeeccchhhHHHHHHHHhCCCeEEEEcCCHHHHHHHHhcCCccccCHHHHHHhcCCCcEEEEE
Confidence 368999999999999999999999999999976432 234445543 3445555544
No 206
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=95.42 E-value=0.014 Score=52.95 Aligned_cols=58 Identities=14% Similarity=0.180 Sum_probs=42.9
Q ss_pred EEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC----------------CcccChhhh-cccCcEEEEeccCC
Q 027226 155 TVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH----------------SQVSCQSSG-WHCKQVISIFNEKG 212 (226)
Q Consensus 155 tvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~----------------~~~~~l~el-l~~sD~v~l~~~~d 212 (226)
++.|+|+|.+|+.+|+.|...|.+|+++++++... .....|+++ +..+|.+.+....|
T Consensus 2 ~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~~~~~ 76 (453)
T PRK09496 2 KIIIVGAGQVGYTLAENLSGENNDVTVIDTDEERLRRLQDRLDVRTVVGNGSSPDVLREAGAEDADLLIAVTDSD 76 (453)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcCEEEEEeCCCCHHHHHHcCCCcCCEEEEecCCh
Confidence 68999999999999999999999999999864321 012234444 67788777764433
No 207
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=95.41 E-value=0.01 Score=52.68 Aligned_cols=52 Identities=23% Similarity=0.325 Sum_probs=41.6
Q ss_pred HHHHHHhCCCCCCCCCccCCCEEEEEcCChHHHHHHHHHccCCC-EEEEEcCC
Q 027226 134 MRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRS 185 (226)
Q Consensus 134 ~~~~~~~~~w~~~~~~~l~gktvgIvG~G~IG~~vA~~l~afG~-~V~~~~r~ 185 (226)
|.++..-..|.......|.+++|.|+|.|.+|..+|+.|...|. ++..+|..
T Consensus 9 Y~Rq~~l~~~g~~~q~~L~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D 61 (355)
T PRK05597 9 YRRQIMLGEIGQQGQQSLFDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDD 61 (355)
T ss_pred hhheechhhcCHHHHHHHhCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 34443334466555678999999999999999999999999998 68888875
No 208
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=95.41 E-value=0.02 Score=48.76 Aligned_cols=55 Identities=22% Similarity=0.232 Sum_probs=43.5
Q ss_pred CEEEEEcCChHHHHHHHHHccCC----CEEEEEcCCCCCC------C--c-ccChhhhcccCcEEEEe
Q 027226 154 KTVFILGFGNIGVELAKRLRPFG----VKIIATKRSWASH------S--Q-VSCQSSGWHCKQVISIF 208 (226)
Q Consensus 154 ktvgIvG~G~IG~~vA~~l~afG----~~V~~~~r~~~~~------~--~-~~~l~ell~~sD~v~l~ 208 (226)
.++|+||.|++|++++..+..-| .+|+..+|+.... + . ..+.+++..++|++.|.
T Consensus 2 ~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~~l~~~~g~~~~~~~~~~~~~advv~La 69 (266)
T COG0345 2 MKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSEEKRAALAAEYGVVTTTDNQEAVEEADVVFLA 69 (266)
T ss_pred ceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCCCHHHHHHHHHHcCCcccCcHHHHHhhCCEEEEE
Confidence 58999999999999999998777 6899988875432 1 1 34556788888888887
No 209
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.40 E-value=0.023 Score=52.30 Aligned_cols=36 Identities=25% Similarity=0.218 Sum_probs=33.2
Q ss_pred cCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCC
Q 027226 151 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW 186 (226)
Q Consensus 151 l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~ 186 (226)
+.||+|+|+|+|.-|+++|+.|+..|++|+.+|...
T Consensus 6 ~~~~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~ 41 (468)
T PRK04690 6 LEGRRVALWGWGREGRAAYRALRAHLPAQALTLFCN 41 (468)
T ss_pred cCCCEEEEEccchhhHHHHHHHHHcCCEEEEEcCCC
Confidence 468999999999999999999999999999999643
No 210
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=95.40 E-value=0.016 Score=44.40 Aligned_cols=32 Identities=19% Similarity=0.343 Sum_probs=27.9
Q ss_pred EEEEcCChHHHHHHHHHccCCCEEEEEcCCCC
Q 027226 156 VFILGFGNIGVELAKRLRPFGVKIIATKRSWA 187 (226)
Q Consensus 156 vgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~ 187 (226)
+-|+|-|++|+++++.++.+|++|+.+|+++.
T Consensus 1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~e 32 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALLGFRVTVVDPRPE 32 (136)
T ss_dssp EEEES-STCHHHHHHHHHHCTEEEEEEES-CC
T ss_pred CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCcc
Confidence 46999999999999999999999999999854
No 211
>PRK07340 ornithine cyclodeaminase; Validated
Probab=95.36 E-value=0.025 Score=49.10 Aligned_cols=58 Identities=10% Similarity=0.040 Sum_probs=45.3
Q ss_pred cCCCEEEEEcCChHHHHHHHHHc-cCCC-EEEEEcCCCCCC------C-------cccChhhhcccCcEEEEe
Q 027226 151 LLGKTVFILGFGNIGVELAKRLR-PFGV-KIIATKRSWASH------S-------QVSCQSSGWHCKQVISIF 208 (226)
Q Consensus 151 l~gktvgIvG~G~IG~~vA~~l~-afG~-~V~~~~r~~~~~------~-------~~~~l~ell~~sD~v~l~ 208 (226)
...++++|+|.|.+|+..++.+. .++. +|..|+|++... . ...+.++++.++|+|+..
T Consensus 123 ~~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~~~~~~~~~~~~~av~~aDiVita 195 (304)
T PRK07340 123 APPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARALGPTAEPLDGEAIPEAVDLVVTA 195 (304)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCCeeEECCHHHHhhcCCEEEEc
Confidence 35689999999999999999986 4675 699999975432 1 134677888899998877
No 212
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=95.33 E-value=0.018 Score=43.69 Aligned_cols=33 Identities=42% Similarity=0.634 Sum_probs=29.6
Q ss_pred CCEEEEEcCChHHHHHHHHHccCCC-EEEEEcCC
Q 027226 153 GKTVFILGFGNIGVELAKRLRPFGV-KIIATKRS 185 (226)
Q Consensus 153 gktvgIvG~G~IG~~vA~~l~afG~-~V~~~~r~ 185 (226)
.++|.|+|.|.+|.++|+.|...|+ ++..+|..
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d 35 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDD 35 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESS
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCc
Confidence 6899999999999999999999999 69998885
No 213
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.30 E-value=0.057 Score=46.35 Aligned_cols=68 Identities=12% Similarity=0.140 Sum_probs=56.4
Q ss_pred CCccCCCEEEEEcCCh-HHHHHHHHHccCCCEEEEEcCCCCCCCcccChhhhcccCcEEEEe-ccCCccccccccc
Q 027226 148 GETLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSGWHCKQVISIF-NEKGFSSGEYCSR 221 (226)
Q Consensus 148 ~~~l~gktvgIvG~G~-IG~~vA~~l~afG~~V~~~~r~~~~~~~~~~l~ell~~sD~v~l~-~~~d~i~~~~~~~ 221 (226)
+.++.||++.|||-+. +|+-+|.+|..-|+.|+.+..+. .+|.+..++||+++.. ....+|..++++.
T Consensus 152 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~AtVtichs~T------~nl~~~~~~ADIvI~AvGk~~~i~~~~ik~ 221 (282)
T PRK14182 152 RVDPKGKRALVVGRSNIVGKPMAMMLLERHATVTIAHSRT------ADLAGEVGRADILVAAIGKAELVKGAWVKE 221 (282)
T ss_pred CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC------CCHHHHHhhCCEEEEecCCcCccCHHHcCC
Confidence 4579999999999986 69999999998899999876542 2689999999999888 6777777776654
No 214
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.30 E-value=0.058 Score=46.45 Aligned_cols=68 Identities=19% Similarity=0.140 Sum_probs=55.6
Q ss_pred CCccCCCEEEEEcCCh-HHHHHHHHHccC----CCEEEEEcCCCCCCCcccChhhhcccCcEEEEe-ccCCccccccccc
Q 027226 148 GETLLGKTVFILGFGN-IGVELAKRLRPF----GVKIIATKRSWASHSQVSCQSSGWHCKQVISIF-NEKGFSSGEYCSR 221 (226)
Q Consensus 148 ~~~l~gktvgIvG~G~-IG~~vA~~l~af----G~~V~~~~r~~~~~~~~~~l~ell~~sD~v~l~-~~~d~i~~~~~~~ 221 (226)
+.++.||++.|||-+. +|+-+|.+|..- ++.|+...... .+|.+.+++||+++.. ....||..++++.
T Consensus 148 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~AtVtvchs~T------~~l~~~~~~ADIvV~AvG~p~~i~~~~ik~ 221 (287)
T PRK14181 148 EIPLHGRHVAIVGRSNIVGKPLAALLMQKHPDTNATVTLLHSQS------ENLTEILKTADIIIAAIGVPLFIKEEMIAE 221 (287)
T ss_pred CCCCCCCEEEEECCCccchHHHHHHHHhCcCCCCCEEEEeCCCC------CCHHHHHhhCCEEEEccCCcCccCHHHcCC
Confidence 4689999999999986 599999999876 88999875432 2789999999999987 6777777776654
No 215
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=95.25 E-value=0.013 Score=52.38 Aligned_cols=54 Identities=20% Similarity=0.356 Sum_probs=43.9
Q ss_pred HHHHHHHHhCCCCCCCCCccCCCEEEEEcCChHHHHHHHHHccCCC-EEEEEcCC
Q 027226 132 NEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRS 185 (226)
Q Consensus 132 ~~~~~~~~~~~w~~~~~~~l~gktvgIvG~G~IG~~vA~~l~afG~-~V~~~~r~ 185 (226)
.+|.++..-..|.......|.+++|.|+|.|.+|..+|+.|...|. ++..+|..
T Consensus 20 ~ry~Rqi~l~~~g~~~q~~l~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D 74 (370)
T PRK05600 20 RRTARQLALPGFGIEQQERLHNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDD 74 (370)
T ss_pred HHhhcccchhhhCHHHHHHhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 3455554445576555678999999999999999999999999998 78888885
No 216
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=95.23 E-value=0.014 Score=42.97 Aligned_cols=54 Identities=15% Similarity=0.077 Sum_probs=39.9
Q ss_pred EEEEEcCChHHHHHHHHHccC--CCEEE-EEcCCCCCC---------CcccChhhhcc--cCcEEEEe
Q 027226 155 TVFILGFGNIGVELAKRLRPF--GVKII-ATKRSWASH---------SQVSCQSSGWH--CKQVISIF 208 (226)
Q Consensus 155 tvgIvG~G~IG~~vA~~l~af--G~~V~-~~~r~~~~~---------~~~~~l~ell~--~sD~v~l~ 208 (226)
++||||+|.+|+...+-+... +++|. .+|+++... ..+.++++++. ..|++.+.
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~I~ 69 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEKYGIPVYTDLEELLADEDVDAVIIA 69 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTSEEESSHHHHHHHTTESEEEEE
T ss_pred EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHhcccchhHHHHHHHhhcCCEEEEe
Confidence 699999999999998777755 66766 466654221 23677899998 67777776
No 217
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.20 E-value=0.064 Score=46.12 Aligned_cols=68 Identities=12% Similarity=0.117 Sum_probs=56.5
Q ss_pred CCccCCCEEEEEcCCh-HHHHHHHHHcc--CCCEEEEEcCCCCCCCcccChhhhcccCcEEEEe-ccCCccccccccc
Q 027226 148 GETLLGKTVFILGFGN-IGVELAKRLRP--FGVKIIATKRSWASHSQVSCQSSGWHCKQVISIF-NEKGFSSGEYCSR 221 (226)
Q Consensus 148 ~~~l~gktvgIvG~G~-IG~~vA~~l~a--fG~~V~~~~r~~~~~~~~~~l~ell~~sD~v~l~-~~~d~i~~~~~~~ 221 (226)
+.++.||++.|||-+. +|+-+|.+|.. -|+.|+...... .+|.+..++||+++.. ....||..++++.
T Consensus 153 ~i~l~Gk~vvViGrS~~VGkPla~lL~~~~~~atVtvchs~T------~~l~~~~k~ADIvV~AvGkp~~i~~~~ik~ 224 (284)
T PRK14193 153 DVELAGAHVVVIGRGVTVGRPIGLLLTRRSENATVTLCHTGT------RDLAAHTRRADIIVAAAGVAHLVTADMVKP 224 (284)
T ss_pred CCCCCCCEEEEECCCCcchHHHHHHHhhccCCCEEEEeCCCC------CCHHHHHHhCCEEEEecCCcCccCHHHcCC
Confidence 5689999999999875 69999999987 799998876542 3689999999999988 7778888777764
No 218
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=95.18 E-value=0.055 Score=47.91 Aligned_cols=68 Identities=13% Similarity=0.146 Sum_probs=56.9
Q ss_pred CCccCCCEEEEEcCCh-HHHHHHHHHccCCCEEEEEcCCCCCCCcccChhhhcccCcEEEEe-ccCCccccccccc
Q 027226 148 GETLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSGWHCKQVISIF-NEKGFSSGEYCSR 221 (226)
Q Consensus 148 ~~~l~gktvgIvG~G~-IG~~vA~~l~afG~~V~~~~r~~~~~~~~~~l~ell~~sD~v~l~-~~~d~i~~~~~~~ 221 (226)
+.++.||++.|||-+. +|+-+|.+|..-|+.|+.+.... .++.+..++||+++.. ....||..++++.
T Consensus 226 ~i~l~GK~vvVIGRS~iVGkPLa~LL~~~~ATVTicHs~T------~nl~~~~r~ADIVIsAvGkp~~i~~d~vK~ 295 (364)
T PLN02616 226 NVEIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT------KNPEEITREADIIISAVGQPNMVRGSWIKP 295 (364)
T ss_pred CCCCCCCEEEEECCCccccHHHHHHHHHCCCeEEEeCCCC------CCHHHHHhhCCEEEEcCCCcCcCCHHHcCC
Confidence 4689999999999986 59999999999999999875442 3789999999999988 7777877776654
No 219
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=95.18 E-value=0.053 Score=47.74 Aligned_cols=68 Identities=12% Similarity=0.182 Sum_probs=56.3
Q ss_pred CCccCCCEEEEEcCCh-HHHHHHHHHccCCCEEEEEcCCCCCCCcccChhhhcccCcEEEEe-ccCCccccccccc
Q 027226 148 GETLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSGWHCKQVISIF-NEKGFSSGEYCSR 221 (226)
Q Consensus 148 ~~~l~gktvgIvG~G~-IG~~vA~~l~afG~~V~~~~r~~~~~~~~~~l~ell~~sD~v~l~-~~~d~i~~~~~~~ 221 (226)
+.++.||++.|||-+. +|+-+|.+|..-|++|....... .++++..++||+++.. ....||..++++.
T Consensus 209 ~i~l~GK~vvVIGRS~iVGkPla~LL~~~~ATVTicHs~T------~nl~~~~~~ADIvIsAvGkp~~v~~d~vk~ 278 (345)
T PLN02897 209 GVEIAGKNAVVIGRSNIVGLPMSLLLQRHDATVSTVHAFT------KDPEQITRKADIVIAAAGIPNLVRGSWLKP 278 (345)
T ss_pred CCCCCCCEEEEECCCccccHHHHHHHHHCCCEEEEEcCCC------CCHHHHHhhCCEEEEccCCcCccCHHHcCC
Confidence 5689999999999986 59999999999999998876542 2689999999999987 7777777766653
No 220
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.16 E-value=0.033 Score=50.75 Aligned_cols=38 Identities=21% Similarity=0.448 Sum_probs=34.5
Q ss_pred cCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCC
Q 027226 151 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS 188 (226)
Q Consensus 151 l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~ 188 (226)
+.++++.|+|.|.+|.++|+.|...|.+|.++|.....
T Consensus 3 ~~~~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~~ 40 (445)
T PRK04308 3 FQNKKILVAGLGGTGISMIAYLRKNGAEVAAYDAELKP 40 (445)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCc
Confidence 56899999999999999999999999999999976543
No 221
>COG0057 GapA Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]
Probab=95.10 E-value=0.026 Score=49.20 Aligned_cols=32 Identities=28% Similarity=0.380 Sum_probs=28.1
Q ss_pred CEEEEEcCChHHHHHHHHHccCC--CEEEEEcCC
Q 027226 154 KTVFILGFGNIGVELAKRLRPFG--VKIIATKRS 185 (226)
Q Consensus 154 ktvgIvG~G~IG~~vA~~l~afG--~~V~~~~r~ 185 (226)
-+|||=|||+|||.++|.+..-+ |+|++++--
T Consensus 2 ikV~INGfGrIGR~v~ra~~~~~~dieVVaInd~ 35 (335)
T COG0057 2 IKVAINGFGRIGRLVARAALERDGDIEVVAINDL 35 (335)
T ss_pred cEEEEecCcHHHHHHHHHHHhCCCCeEEEEEecC
Confidence 37999999999999999998664 999998773
No 222
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=95.08 E-value=0.045 Score=37.45 Aligned_cols=35 Identities=34% Similarity=0.462 Sum_probs=31.9
Q ss_pred EEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC
Q 027226 155 TVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH 189 (226)
Q Consensus 155 tvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~ 189 (226)
++.|||-|.||-++|..++.+|.+|..+.+.+...
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~ 35 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLL 35 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhh
Confidence 58899999999999999999999999999976654
No 223
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.07 E-value=0.062 Score=46.23 Aligned_cols=68 Identities=10% Similarity=0.148 Sum_probs=56.2
Q ss_pred CCccCCCEEEEEcCCh-HHHHHHHHHccCCCEEEEEcCCCCCCCcccChhhhcccCcEEEEe-ccCCccccccccc
Q 027226 148 GETLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSGWHCKQVISIF-NEKGFSSGEYCSR 221 (226)
Q Consensus 148 ~~~l~gktvgIvG~G~-IG~~vA~~l~afG~~V~~~~r~~~~~~~~~~l~ell~~sD~v~l~-~~~d~i~~~~~~~ 221 (226)
+.++.||++.|||-+. +|+-+|.+|..-|+.|+.+... ..+|.+.+++||+++.. ...++|..++++.
T Consensus 153 ~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~atVt~chs~------t~~l~~~~~~ADIvI~AvG~p~~i~~~~ik~ 222 (284)
T PRK14190 153 NIDISGKHVVVVGRSNIVGKPVGQLLLNENATVTYCHSK------TKNLAELTKQADILIVAVGKPKLITADMVKE 222 (284)
T ss_pred CCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEEeCC------chhHHHHHHhCCEEEEecCCCCcCCHHHcCC
Confidence 4589999999999885 6999999999999999887543 23789999999999887 6777777777643
No 224
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=95.05 E-value=0.06 Score=48.65 Aligned_cols=60 Identities=22% Similarity=0.307 Sum_probs=50.8
Q ss_pred ccCCCEEEEEcC----------ChHHHHHHHHHccCCCEEEEEcCCCCCCC-----cccChhhhcccCcEEEEec
Q 027226 150 TLLGKTVFILGF----------GNIGVELAKRLRPFGVKIIATKRSWASHS-----QVSCQSSGWHCKQVISIFN 209 (226)
Q Consensus 150 ~l~gktvgIvG~----------G~IG~~vA~~l~afG~~V~~~~r~~~~~~-----~~~~l~ell~~sD~v~l~~ 209 (226)
.+.|++|+|+|+ .+-...+++.|...|++|.+|||...... ...++++.+..+|.++++.
T Consensus 310 ~~~~~~v~vlGlafK~~t~d~r~sp~~~~~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~ad~~v~~t 384 (411)
T TIGR03026 310 PLKGKTVLILGLAFKPNTDDVRESPALDIIELLKEKGAKVKAYDPLVPEEEVKGLPLIDDLEEALKGADALVILT 384 (411)
T ss_pred cccCCEEEEEeeEecCCCCccccChHHHHHHHHHhCCCEEEEECCCCChhhhhhcccCCCHHHHHhCCCEEEEec
Confidence 578999999998 66788999999999999999999865431 1367889999999999993
No 225
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=95.02 E-value=0.027 Score=44.39 Aligned_cols=53 Identities=21% Similarity=0.235 Sum_probs=42.8
Q ss_pred EEEEc-CChHHHHHHHHHccCCCEEEEEcCCCCCC-------------CcccChhhhcccCcEEEEe
Q 027226 156 VFILG-FGNIGVELAKRLRPFGVKIIATKRSWASH-------------SQVSCQSSGWHCKQVISIF 208 (226)
Q Consensus 156 vgIvG-~G~IG~~vA~~l~afG~~V~~~~r~~~~~-------------~~~~~l~ell~~sD~v~l~ 208 (226)
|.|+| .|.+|+.+++.|..-|.+|+++.|++.+. .+...+.+.++.+|.+...
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~~~~~~~~~~d~~d~~~~~~al~~~d~vi~~ 67 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAEDSPGVEIIQGDLFDPDSVKAALKGADAVIHA 67 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHHCTTEEEEESCTTCHHHHHHHHTTSSEEEEC
T ss_pred eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhcccccccccceeeehhhhhhhhhhhhcchhhhh
Confidence 67899 59999999999999999999999987641 1334556778888888776
No 226
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=95.01 E-value=0.01 Score=52.99 Aligned_cols=34 Identities=26% Similarity=0.481 Sum_probs=31.8
Q ss_pred CEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCC
Q 027226 154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA 187 (226)
Q Consensus 154 ktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~ 187 (226)
.|+||+|+|-||--+|-.+..-|++|+|+|-..+
T Consensus 10 ~~I~ViGLGYVGLPlA~~fA~~G~~ViG~DIn~~ 43 (436)
T COG0677 10 ATIGVIGLGYVGLPLAAAFASAGFKVIGVDINQK 43 (436)
T ss_pred eEEEEEccccccHHHHHHHHHcCCceEeEeCCHH
Confidence 7999999999999999999999999999998643
No 227
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=94.97 E-value=0.038 Score=48.48 Aligned_cols=57 Identities=14% Similarity=0.021 Sum_probs=44.9
Q ss_pred CCCEEEEEcCChHHHHHHHHHc-cCCC-EEEEEcCCCCCC---------------CcccChhhhcccCcEEEEe
Q 027226 152 LGKTVFILGFGNIGVELAKRLR-PFGV-KIIATKRSWASH---------------SQVSCQSSGWHCKQVISIF 208 (226)
Q Consensus 152 ~gktvgIvG~G~IG~~vA~~l~-afG~-~V~~~~r~~~~~---------------~~~~~l~ell~~sD~v~l~ 208 (226)
..++++|+|.|..|+..++.+. .++. +|..|+|+.... ....++++.+..+|+|+..
T Consensus 128 ~~~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~~~~a~~~a~~~~~~~g~~v~~~~~~~~av~~aDiVvta 201 (326)
T TIGR02992 128 DSSVVAIFGAGMQARLQLEALTLVRDIRSARIWARDSAKAEALALQLSSLLGIDVTAATDPRAAMSGADIIVTT 201 (326)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhccCCEEEEe
Confidence 3579999999999999999996 5785 699999985432 0135567788899998887
No 228
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=94.97 E-value=0.061 Score=48.80 Aligned_cols=62 Identities=6% Similarity=0.109 Sum_probs=51.4
Q ss_pred CCccCCCEEEEEcC----------ChHHHHHHHHHccCC-CEEEEEcCCCCCC-------CcccChhhhcccCcEEEEec
Q 027226 148 GETLLGKTVFILGF----------GNIGVELAKRLRPFG-VKIIATKRSWASH-------SQVSCQSSGWHCKQVISIFN 209 (226)
Q Consensus 148 ~~~l~gktvgIvG~----------G~IG~~vA~~l~afG-~~V~~~~r~~~~~-------~~~~~l~ell~~sD~v~l~~ 209 (226)
+..+.|++|+|+|+ .+-...+++.|+..| ++|.+|||..... ....++++.+..+|.++++.
T Consensus 315 ~~~~~~~~v~vlGlafK~~t~d~r~Sp~~~l~~~L~~~gg~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~ad~vvi~t 394 (415)
T PRK11064 315 DKRASEVKIACFGLAFKPNIDDLRESPAMEIAELIAQWHSGETLVVEPNIHQLPKKLDGLVTLVSLDEALATADVLVMLV 394 (415)
T ss_pred ccCcCCCEEEEEeeEECCCCcchhhChHHHHHHHHHhcCCcEEEEECCCCCchhhhccCceeeCCHHHHHhCCCEEEECC
Confidence 45689999999998 668889999999996 9999999975432 12467889999999999993
No 229
>PRK08223 hypothetical protein; Validated
Probab=94.97 E-value=0.054 Score=46.68 Aligned_cols=39 Identities=23% Similarity=0.307 Sum_probs=34.6
Q ss_pred CCCccCCCEEEEEcCChHHHHHHHHHccCCC-EEEEEcCC
Q 027226 147 TGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRS 185 (226)
Q Consensus 147 ~~~~l~gktvgIvG~G~IG~~vA~~l~afG~-~V~~~~r~ 185 (226)
....|+.++|.|+|+|.+|..+|+.|...|. ++..+|..
T Consensus 21 ~Q~kL~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D 60 (287)
T PRK08223 21 EQQRLRNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFD 60 (287)
T ss_pred HHHHHhcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 4578999999999999999999999999998 67777774
No 230
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=94.96 E-value=0.043 Score=46.72 Aligned_cols=38 Identities=21% Similarity=0.269 Sum_probs=34.2
Q ss_pred ccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCC
Q 027226 150 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA 187 (226)
Q Consensus 150 ~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~ 187 (226)
...+++++|+|.|.+|++++..+...|.+|+.++|+..
T Consensus 114 ~~~~k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~~~ 151 (270)
T TIGR00507 114 LRPNQRVLIIGAGGAARAVALPLLKADCNVIIANRTVS 151 (270)
T ss_pred CccCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 35679999999999999999999999999999999754
No 231
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.95 E-value=0.036 Score=50.52 Aligned_cols=36 Identities=14% Similarity=0.272 Sum_probs=32.6
Q ss_pred CCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCC
Q 027226 152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA 187 (226)
Q Consensus 152 ~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~ 187 (226)
++-+++|+|+|.+|..+|+.|+..|.+|.++|....
T Consensus 5 ~~~~~~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~ 40 (448)
T PRK03803 5 SDGLHIVVGLGKTGLSVVRFLARQGIPFAVMDSREQ 40 (448)
T ss_pred cCCeEEEEeecHhHHHHHHHHHhCCCeEEEEeCCCC
Confidence 456899999999999999999999999999997643
No 232
>PTZ00117 malate dehydrogenase; Provisional
Probab=94.95 E-value=0.068 Score=46.74 Aligned_cols=37 Identities=16% Similarity=0.183 Sum_probs=31.9
Q ss_pred cCCCEEEEEcCChHHHHHHHHHccCC-CEEEEEcCCCC
Q 027226 151 LLGKTVFILGFGNIGVELAKRLRPFG-VKIIATKRSWA 187 (226)
Q Consensus 151 l~gktvgIvG~G~IG~~vA~~l~afG-~~V~~~~r~~~ 187 (226)
...++|+|||.|.+|..+|-.+...| .+|..+|....
T Consensus 3 ~~~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~ 40 (319)
T PTZ00117 3 VKRKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKG 40 (319)
T ss_pred CCCcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCc
Confidence 45679999999999999999998777 68999998653
No 233
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=94.94 E-value=0.038 Score=43.62 Aligned_cols=40 Identities=15% Similarity=0.251 Sum_probs=33.3
Q ss_pred CCccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCC
Q 027226 148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA 187 (226)
Q Consensus 148 ~~~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~ 187 (226)
...+...+|.|+|.|+.|+..++.|+++|++|..++.++.
T Consensus 15 ~~~~~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~~ 54 (168)
T PF01262_consen 15 PGGVPPAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERPE 54 (168)
T ss_dssp TTEE-T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHH
T ss_pred CCCCCCeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCHH
Confidence 3567789999999999999999999999999999998643
No 234
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=94.91 E-value=0.034 Score=48.29 Aligned_cols=33 Identities=27% Similarity=0.211 Sum_probs=30.8
Q ss_pred CEEEEEcCChHHHHHHHHHccCCCEEEEEcCCC
Q 027226 154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSW 186 (226)
Q Consensus 154 ktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~ 186 (226)
.+|+|+|.|.||..+|.+|+..|.+|..+.|+.
T Consensus 6 m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~ 38 (313)
T PRK06249 6 PRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD 38 (313)
T ss_pred cEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence 589999999999999999999999999999865
No 235
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=94.90 E-value=0.0098 Score=49.96 Aligned_cols=39 Identities=26% Similarity=0.407 Sum_probs=34.3
Q ss_pred CCccCCCEEEEEcCChHHHHHHHHHccCCC-EEEEEcCCC
Q 027226 148 GETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSW 186 (226)
Q Consensus 148 ~~~l~gktvgIvG~G~IG~~vA~~l~afG~-~V~~~~r~~ 186 (226)
...|++++|.|+|.|.+|..+|+.|...|. +++.+|+..
T Consensus 19 q~~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ 58 (240)
T TIGR02355 19 QEALKASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDT 58 (240)
T ss_pred HHHHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCc
Confidence 467999999999999999999999999998 688888753
No 236
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=94.87 E-value=0.034 Score=51.68 Aligned_cols=35 Identities=20% Similarity=0.265 Sum_probs=32.1
Q ss_pred CCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCC
Q 027226 153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA 187 (226)
Q Consensus 153 gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~ 187 (226)
=++|||||.|.+|..+|..+..-|.+|+.||+++.
T Consensus 5 ~~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e 39 (503)
T TIGR02279 5 VVTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAE 39 (503)
T ss_pred ccEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 36899999999999999999999999999999754
No 237
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.87 E-value=0.094 Score=45.41 Aligned_cols=68 Identities=13% Similarity=0.165 Sum_probs=54.4
Q ss_pred CCccCCCEEEEEcCCh-HHHHHHHHHccC----CCEEEEEcCCCCCCCcccChhhhcccCcEEEEe-ccCCccccccccc
Q 027226 148 GETLLGKTVFILGFGN-IGVELAKRLRPF----GVKIIATKRSWASHSQVSCQSSGWHCKQVISIF-NEKGFSSGEYCSR 221 (226)
Q Consensus 148 ~~~l~gktvgIvG~G~-IG~~vA~~l~af----G~~V~~~~r~~~~~~~~~~l~ell~~sD~v~l~-~~~d~i~~~~~~~ 221 (226)
+.++.||++.|||-+. +|+-+|.+|..- ++.|...... ..+|.+..++||+++.. ...++|..++++.
T Consensus 152 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~------T~~l~~~~~~ADIvIsAvGkp~~i~~~~ik~ 225 (297)
T PRK14167 152 GVDTEGADVVVVGRSDIVGKPMANLLIQKADGGNATVTVCHSR------TDDLAAKTRRADIVVAAAGVPELIDGSMLSE 225 (297)
T ss_pred CCCCCCCEEEEECCCcccHHHHHHHHhcCccCCCCEEEEeCCC------CCCHHHHHhhCCEEEEccCCcCccCHHHcCC
Confidence 4579999999999986 699999999754 8999876433 22689999999999987 7777777776654
No 238
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=94.85 E-value=0.035 Score=51.63 Aligned_cols=34 Identities=21% Similarity=0.321 Sum_probs=31.7
Q ss_pred CEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCC
Q 027226 154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA 187 (226)
Q Consensus 154 ktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~ 187 (226)
++|||||.|.+|..+|..+..-|.+|+.||+++.
T Consensus 8 ~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e 41 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAG 41 (507)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 6899999999999999999988999999999755
No 239
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=94.84 E-value=0.033 Score=48.78 Aligned_cols=33 Identities=30% Similarity=0.496 Sum_probs=30.5
Q ss_pred CEEEEEcCChHHHHHHHHHccCCCEEEEEcCCC
Q 027226 154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSW 186 (226)
Q Consensus 154 ktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~ 186 (226)
.+|+|||.|.+|..+|..|..-|.+|+.|+|+.
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~ 35 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAAGADVTLIGRAR 35 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCcEEEEecHH
Confidence 479999999999999999998899999999864
No 240
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=94.82 E-value=0.048 Score=47.83 Aligned_cols=67 Identities=10% Similarity=0.103 Sum_probs=46.9
Q ss_pred CCEEEEEcCChHHHHHHHHHc-cCC-CEEEEEcCCCCCC---------C-----cccChhhhcccCcEEEEe--ccCCcc
Q 027226 153 GKTVFILGFGNIGVELAKRLR-PFG-VKIIATKRSWASH---------S-----QVSCQSSGWHCKQVISIF--NEKGFS 214 (226)
Q Consensus 153 gktvgIvG~G~IG~~vA~~l~-afG-~~V~~~~r~~~~~---------~-----~~~~l~ell~~sD~v~l~--~~~d~i 214 (226)
-+++||+|.|.+|+.-++.+. .+. -+|..|+|+.... . ...+.+++++.+|+|+.. ...-++
T Consensus 128 ~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~~~g~~v~~~~~~~eav~~aDiVitaT~s~~P~~ 207 (325)
T TIGR02371 128 SSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRASDYEVPVRAATDPREAVEGCDILVTTTPSRKPVV 207 (325)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhhCCcEEEeCCHHHHhccCCEEEEecCCCCcEe
Confidence 489999999999998766654 233 4799999985442 1 145678899999999887 233344
Q ss_pred ccccc
Q 027226 215 SGEYC 219 (226)
Q Consensus 215 ~~~~~ 219 (226)
..+.+
T Consensus 208 ~~~~l 212 (325)
T TIGR02371 208 KADWV 212 (325)
T ss_pred cHHHc
Confidence 44433
No 241
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=94.81 E-value=0.034 Score=47.66 Aligned_cols=32 Identities=28% Similarity=0.344 Sum_probs=29.6
Q ss_pred EEEEEcCChHHHHHHHHHccCCCEEEEEcCCC
Q 027226 155 TVFILGFGNIGVELAKRLRPFGVKIIATKRSW 186 (226)
Q Consensus 155 tvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~ 186 (226)
+|+|+|.|++|..+|..|..-|.+|..++|+.
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~ 33 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGHDVTLVARRG 33 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEECCh
Confidence 69999999999999999998899999999854
No 242
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=94.79 E-value=0.07 Score=45.40 Aligned_cols=55 Identities=16% Similarity=0.153 Sum_probs=35.5
Q ss_pred CEEEEEcCChHHHHHHHHHccC-CCEEEEEc-CCCCCC----------CcccChhhhcccCcEEEEe
Q 027226 154 KTVFILGFGNIGVELAKRLRPF-GVKIIATK-RSWASH----------SQVSCQSSGWHCKQVISIF 208 (226)
Q Consensus 154 ktvgIvG~G~IG~~vA~~l~af-G~~V~~~~-r~~~~~----------~~~~~l~ell~~sD~v~l~ 208 (226)
.+|||+|+|+||+.+++.+... ++++.++- +..... .-..+++++-...|+++..
T Consensus 2 ~rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~DvVve~ 68 (265)
T PRK13303 2 MKVAMIGFGAIGAAVLELLEHDPDLRVDWVIVPEHSIDAVRRALGEAVRVVSSVDALPQRPDLVVEC 68 (265)
T ss_pred cEEEEECCCHHHHHHHHHHhhCCCceEEEEEEcCCCHHHHhhhhccCCeeeCCHHHhccCCCEEEEC
Confidence 3799999999999999999865 56654432 321110 1134566663456777766
No 243
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=94.76 E-value=0.043 Score=50.28 Aligned_cols=38 Identities=26% Similarity=0.364 Sum_probs=34.2
Q ss_pred ccCCCEEEEEcCChHHHH-HHHHHccCCCEEEEEcCCCC
Q 027226 150 TLLGKTVFILGFGNIGVE-LAKRLRPFGVKIIATKRSWA 187 (226)
Q Consensus 150 ~l~gktvgIvG~G~IG~~-vA~~l~afG~~V~~~~r~~~ 187 (226)
..+++++.|+|+|..|.. +|+.|+..|.+|.++|....
T Consensus 4 ~~~~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~ 42 (461)
T PRK00421 4 LRRIKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKES 42 (461)
T ss_pred cCCCCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCC
Confidence 456789999999999999 79999999999999998654
No 244
>PRK08618 ornithine cyclodeaminase; Validated
Probab=94.75 E-value=0.047 Score=47.86 Aligned_cols=57 Identities=12% Similarity=0.156 Sum_probs=42.8
Q ss_pred CCCEEEEEcCChHHHHHHHHHc-cCCC-EEEEEcCCCCCC---------------CcccChhhhcccCcEEEEe
Q 027226 152 LGKTVFILGFGNIGVELAKRLR-PFGV-KIIATKRSWASH---------------SQVSCQSSGWHCKQVISIF 208 (226)
Q Consensus 152 ~gktvgIvG~G~IG~~vA~~l~-afG~-~V~~~~r~~~~~---------------~~~~~l~ell~~sD~v~l~ 208 (226)
..++++|+|.|.+|+..++.+. ..+. +|..|+|++... ....+++++++.+|+|+..
T Consensus 126 ~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~aDiVi~a 199 (325)
T PRK08618 126 DAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKFNTEIYVVNSADEAIEEADIIVTV 199 (325)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEc
Confidence 4689999999999999887764 5676 699999975432 0135567788888888776
No 245
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=94.74 E-value=0.067 Score=46.44 Aligned_cols=35 Identities=23% Similarity=0.425 Sum_probs=30.6
Q ss_pred CEEEEEcCChHHHHHHHHHccCCC--EEEEEcCCCCC
Q 027226 154 KTVFILGFGNIGVELAKRLRPFGV--KIIATKRSWAS 188 (226)
Q Consensus 154 ktvgIvG~G~IG~~vA~~l~afG~--~V~~~~r~~~~ 188 (226)
++|+|+|.|.+|+.+|..|...|. +|..+|+....
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~ 37 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEK 37 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcch
Confidence 479999999999999999998884 79999996543
No 246
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=94.72 E-value=0.032 Score=50.76 Aligned_cols=34 Identities=18% Similarity=0.354 Sum_probs=30.5
Q ss_pred CEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCC
Q 027226 154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS 188 (226)
Q Consensus 154 ktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~ 188 (226)
-+|||||+|.+|..+|..+.. |.+|++||++...
T Consensus 7 mkI~vIGlGyvGlpmA~~la~-~~~V~g~D~~~~~ 40 (425)
T PRK15182 7 VKIAIIGLGYVGLPLAVEFGK-SRQVVGFDVNKKR 40 (425)
T ss_pred CeEEEECcCcchHHHHHHHhc-CCEEEEEeCCHHH
Confidence 579999999999999999887 7999999997544
No 247
>PRK07411 hypothetical protein; Validated
Probab=94.71 E-value=0.02 Score=51.52 Aligned_cols=44 Identities=23% Similarity=0.372 Sum_probs=37.3
Q ss_pred CCCCCCCCccCCCEEEEEcCChHHHHHHHHHccCCC-EEEEEcCC
Q 027226 142 KLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRS 185 (226)
Q Consensus 142 ~w~~~~~~~l~gktvgIvG~G~IG~~vA~~l~afG~-~V~~~~r~ 185 (226)
.|.......|+..+|+|+|.|.+|..+|+.|...|. ++..+|..
T Consensus 27 ~~g~~~q~~L~~~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~D 71 (390)
T PRK07411 27 EVGLEGQKRLKAASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFD 71 (390)
T ss_pred hcCHHHHHHHhcCcEEEECCCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 354444578999999999999999999999999998 68888874
No 248
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.71 E-value=0.11 Score=44.99 Aligned_cols=68 Identities=13% Similarity=0.145 Sum_probs=54.3
Q ss_pred CCccCCCEEEEEcCCh-HHHHHHHHHccC----CCEEEEEcCCCCCCCcccChhhhcccCcEEEEe-ccCCccccccccc
Q 027226 148 GETLLGKTVFILGFGN-IGVELAKRLRPF----GVKIIATKRSWASHSQVSCQSSGWHCKQVISIF-NEKGFSSGEYCSR 221 (226)
Q Consensus 148 ~~~l~gktvgIvG~G~-IG~~vA~~l~af----G~~V~~~~r~~~~~~~~~~l~ell~~sD~v~l~-~~~d~i~~~~~~~ 221 (226)
+.++.||++.|||-+. +|+-+|.+|..- ++.|+...... .+|.+..++||+++.. ...+||..++++.
T Consensus 152 ~i~l~GK~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~T------~nl~~~~~~ADIvIsAvGkp~~i~~~~vk~ 225 (293)
T PRK14185 152 HIETSGKKCVVLGRSNIVGKPMAQLMMQKAYPGDCTVTVCHSRS------KNLKKECLEADIIIAALGQPEFVKADMVKE 225 (293)
T ss_pred CCCCCCCEEEEECCCccchHHHHHHHHcCCCCCCCEEEEecCCC------CCHHHHHhhCCEEEEccCCcCccCHHHcCC
Confidence 4579999999999986 599999999754 79998874432 2689999999999887 7777777666653
No 249
>PRK06392 homoserine dehydrogenase; Provisional
Probab=94.71 E-value=0.047 Score=47.98 Aligned_cols=30 Identities=20% Similarity=0.655 Sum_probs=25.6
Q ss_pred EEEEEcCChHHHHHHHHHcc--------CCCEEEEEcC
Q 027226 155 TVFILGFGNIGVELAKRLRP--------FGVKIIATKR 184 (226)
Q Consensus 155 tvgIvG~G~IG~~vA~~l~a--------fG~~V~~~~r 184 (226)
+|+|+|||+||+.+++.+.. ++.+|.++..
T Consensus 2 rVaIiGfG~VG~~va~~L~~~~~~~~~g~~l~VVaVsd 39 (326)
T PRK06392 2 RISIIGLGNVGLNVLRIIKSRNDDRRNNNGISVVSVSD 39 (326)
T ss_pred EEEEECCCHHHHHHHHHHHhCHHhHhcCCCeEEEEEEE
Confidence 79999999999999999864 7788777654
No 250
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=94.69 E-value=0.051 Score=45.81 Aligned_cols=34 Identities=24% Similarity=0.438 Sum_probs=31.5
Q ss_pred CEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCC
Q 027226 154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA 187 (226)
Q Consensus 154 ktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~ 187 (226)
-++-|+|-|++++++|+.++.+|++|+.+|.++.
T Consensus 101 ~~L~IfGaG~va~~la~la~~lGf~V~v~D~R~~ 134 (246)
T TIGR02964 101 PHVVLFGAGHVGRALVRALAPLPCRVTWVDSREA 134 (246)
T ss_pred CEEEEECCcHHHHHHHHHHhcCCCEEEEEeCCcc
Confidence 5899999999999999999999999999997644
No 251
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=94.66 E-value=0.1 Score=43.43 Aligned_cols=38 Identities=26% Similarity=0.459 Sum_probs=34.9
Q ss_pred CCccCCCEEEEEcCChHHHHHHHHHccCCCE---EEEEcCC
Q 027226 148 GETLLGKTVFILGFGNIGVELAKRLRPFGVK---IIATKRS 185 (226)
Q Consensus 148 ~~~l~gktvgIvG~G~IG~~vA~~l~afG~~---V~~~~r~ 185 (226)
+..+.++++.|+|.|..|+.+|+.|...|++ |+.+||+
T Consensus 20 g~~l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~ 60 (226)
T cd05311 20 GKKIEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSK 60 (226)
T ss_pred CCCccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCC
Confidence 4578999999999999999999999999985 9999998
No 252
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=94.66 E-value=0.046 Score=47.11 Aligned_cols=37 Identities=19% Similarity=0.211 Sum_probs=34.1
Q ss_pred ccCCCEEEEEcCChHHHHHHHHHccCCCE-EEEEcCCC
Q 027226 150 TLLGKTVFILGFGNIGVELAKRLRPFGVK-IIATKRSW 186 (226)
Q Consensus 150 ~l~gktvgIvG~G~IG~~vA~~l~afG~~-V~~~~r~~ 186 (226)
.+.+|++.|+|.|.+|++++..|...|++ |..++|+.
T Consensus 123 ~~~~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~ 160 (289)
T PRK12548 123 DVKGKKLTVIGAGGAATAIQVQCALDGAKEITIFNIKD 160 (289)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence 47889999999999999999999999996 99999975
No 253
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=94.60 E-value=0.038 Score=42.47 Aligned_cols=56 Identities=21% Similarity=0.216 Sum_probs=42.5
Q ss_pred EEEEEcC-ChHHHHHHHHHc--cCCCEEEEEcCCCCCC------------------CcccChhhhcccCcEEEEecc
Q 027226 155 TVFILGF-GNIGVELAKRLR--PFGVKIIATKRSWASH------------------SQVSCQSSGWHCKQVISIFNE 210 (226)
Q Consensus 155 tvgIvG~-G~IG~~vA~~l~--afG~~V~~~~r~~~~~------------------~~~~~l~ell~~sD~v~l~~~ 210 (226)
+|+|+|. |++|+.+|-.|. .++-++..+|+..... .-..+..+.++.||++++..-
T Consensus 2 KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~~aDivvitag 78 (141)
T PF00056_consen 2 KVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITSGDYEALKDADIVVITAG 78 (141)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEESSGGGGTTESEEEETTS
T ss_pred EEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhcccccccccccccccccccEEEEecc
Confidence 7999999 999999999886 6667899999974321 001245677889999998743
No 254
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=94.59 E-value=0.043 Score=48.02 Aligned_cols=55 Identities=20% Similarity=0.220 Sum_probs=45.0
Q ss_pred CEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCC-----------CC-----------CcccChhhhcccCcEEEEe
Q 027226 154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA-----------SH-----------SQVSCQSSGWHCKQVISIF 208 (226)
Q Consensus 154 ktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~-----------~~-----------~~~~~l~ell~~sD~v~l~ 208 (226)
.+|.|+|.|+-|.++|..|..-|-+|..|.|.+. +. ....++++.+..+|++.+.
T Consensus 2 ~kI~ViGaGswGTALA~~la~ng~~V~lw~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~~ad~iv~a 78 (329)
T COG0240 2 MKIAVIGAGSWGTALAKVLARNGHEVRLWGRDEEIVAEINETRENPKYLPGILLPPNLKATTDLAEALDGADIIVIA 78 (329)
T ss_pred ceEEEEcCChHHHHHHHHHHhcCCeeEEEecCHHHHHHHHhcCcCccccCCccCCcccccccCHHHHHhcCCEEEEE
Confidence 5899999999999999999999999999998521 11 1256788888889988887
No 255
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=94.59 E-value=0.027 Score=50.33 Aligned_cols=44 Identities=25% Similarity=0.380 Sum_probs=37.6
Q ss_pred CCCCCCCCccCCCEEEEEcCChHHHHHHHHHccCCC-EEEEEcCC
Q 027226 142 KLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRS 185 (226)
Q Consensus 142 ~w~~~~~~~l~gktvgIvG~G~IG~~vA~~l~afG~-~V~~~~r~ 185 (226)
.|.......+.+++|.|+|.|.+|..+|+.|...|. ++..+|+.
T Consensus 124 ~~g~~~q~~l~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d 168 (376)
T PRK08762 124 EVGEEGQRRLLEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHD 168 (376)
T ss_pred hcCHHHHHHHhcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 454433467899999999999999999999999999 69999886
No 256
>PRK06197 short chain dehydrogenase; Provisional
Probab=94.57 E-value=0.051 Score=46.70 Aligned_cols=47 Identities=19% Similarity=0.254 Sum_probs=39.4
Q ss_pred hCCCCCCCCCccCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCC
Q 027226 140 QKKLGVPTGETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW 186 (226)
Q Consensus 140 ~~~w~~~~~~~l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~ 186 (226)
.+.|......++.||++.|.|- |.||+++|+.|...|++|+..+|+.
T Consensus 3 ~~~~~~~~~~~~~~k~vlItGas~gIG~~~a~~l~~~G~~vi~~~r~~ 50 (306)
T PRK06197 3 MTKWTAADIPDQSGRVAVVTGANTGLGYETAAALAAKGAHVVLAVRNL 50 (306)
T ss_pred CCCCCccccccCCCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCH
Confidence 3557554457899999999985 8999999999999999999998863
No 257
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=94.55 E-value=0.022 Score=46.35 Aligned_cols=43 Identities=30% Similarity=0.471 Sum_probs=36.9
Q ss_pred CCCCCCCccCCCEEEEEcCChHHHHHHHHHccCCCE-EEEEcCC
Q 027226 143 LGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVK-IIATKRS 185 (226)
Q Consensus 143 w~~~~~~~l~gktvgIvG~G~IG~~vA~~l~afG~~-V~~~~r~ 185 (226)
|.......|++++|.|+|+|.+|.++|+-|...|.. +..+|..
T Consensus 9 ~G~~~q~~L~~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d 52 (198)
T cd01485 9 WGDEAQNKLRSAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHR 52 (198)
T ss_pred cCHHHHHHHhhCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECC
Confidence 655455789999999999999999999999999984 8888764
No 258
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=94.50 E-value=0.045 Score=49.24 Aligned_cols=33 Identities=15% Similarity=0.162 Sum_probs=28.9
Q ss_pred EEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCC
Q 027226 155 TVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS 188 (226)
Q Consensus 155 tvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~ 188 (226)
+|+|+|+|.+|..+|..++ .|.+|++||++...
T Consensus 2 kI~VIGlGyvGl~~A~~lA-~G~~VigvD~d~~k 34 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIA-QNHEVVALDILPSR 34 (388)
T ss_pred EEEEECCCHHHHHHHHHHH-hCCcEEEEECCHHH
Confidence 6999999999999998776 49999999997543
No 259
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.46 E-value=0.062 Score=48.82 Aligned_cols=37 Identities=24% Similarity=0.318 Sum_probs=33.7
Q ss_pred cCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCC
Q 027226 151 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA 187 (226)
Q Consensus 151 l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~ 187 (226)
+.++++.|+|+|..|...++.|+..|.+|.++|....
T Consensus 4 ~~~~~i~v~G~G~sG~s~~~~l~~~G~~v~~~D~~~~ 40 (438)
T PRK03806 4 YQGKKVVIIGLGLTGLSCVDFFLARGVTPRVIDTRIT 40 (438)
T ss_pred cCCCEEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCCC
Confidence 5688999999999999999999999999999997543
No 260
>PRK04148 hypothetical protein; Provisional
Probab=94.41 E-value=0.044 Score=41.87 Aligned_cols=35 Identities=26% Similarity=0.384 Sum_probs=32.2
Q ss_pred CCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCC
Q 027226 152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA 187 (226)
Q Consensus 152 ~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~ 187 (226)
+++++.+||+| -|..+|+.|+..|.+|++.|.++.
T Consensus 16 ~~~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~ 50 (134)
T PRK04148 16 KNKKIVELGIG-FYFKVAKKLKESGFDVIVIDINEK 50 (134)
T ss_pred cCCEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHH
Confidence 56899999999 999999999999999999998865
No 261
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=94.36 E-value=0.069 Score=47.78 Aligned_cols=60 Identities=27% Similarity=0.329 Sum_probs=49.8
Q ss_pred cCCCEEEEEcC----------ChHHHHHHHHHccCCCEEEEEcCCCCCC--------CcccChhhhcccCcEEEEecc
Q 027226 151 LLGKTVFILGF----------GNIGVELAKRLRPFGVKIIATKRSWASH--------SQVSCQSSGWHCKQVISIFNE 210 (226)
Q Consensus 151 l~gktvgIvG~----------G~IG~~vA~~l~afG~~V~~~~r~~~~~--------~~~~~l~ell~~sD~v~l~~~ 210 (226)
|.||||||+|+ .+--..++++|+..|++|++|||-..+. .=..++++++..||.+++..+
T Consensus 308 l~Gk~iavlgLafKpnTDD~ReSpa~~vi~~L~~~Ga~V~aYDP~a~~~~~~~~~~~~~~~~~~~~~~~aDaivi~te 385 (414)
T COG1004 308 LKGKTIAVLGLAFKPNTDDMRESPALDIIKRLQEKGAEVIAYDPVAMENAFRNFPDVELESDAEEALKGADAIVINTE 385 (414)
T ss_pred CCCcEEEEEEEeecCCCccchhchHHHHHHHHHHCCCEEEEECchhhHHHHhcCCCceEeCCHHHHHhhCCEEEEecc
Confidence 99999999998 3567889999999999999999965543 114678899999999999843
No 262
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.33 E-value=0.15 Score=44.01 Aligned_cols=68 Identities=15% Similarity=0.205 Sum_probs=55.5
Q ss_pred CCccCCCEEEEEcCCh-HHHHHHHHHcc----CCCEEEEEcCCCCCCCcccChhhhcccCcEEEEe-ccCCccccccccc
Q 027226 148 GETLLGKTVFILGFGN-IGVELAKRLRP----FGVKIIATKRSWASHSQVSCQSSGWHCKQVISIF-NEKGFSSGEYCSR 221 (226)
Q Consensus 148 ~~~l~gktvgIvG~G~-IG~~vA~~l~a----fG~~V~~~~r~~~~~~~~~~l~ell~~sD~v~l~-~~~d~i~~~~~~~ 221 (226)
+.++.||++.|||-+. +|+-+|.+|.. -|++|.....+ ..+|.+.++.||+++.. ....+|..++++.
T Consensus 152 ~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~AtVt~~hs~------t~~l~~~~~~ADIVI~AvG~p~li~~~~vk~ 225 (286)
T PRK14184 152 GLSPAGKKAVVVGRSNIVGKPLALMLGAPGKFANATVTVCHSR------TPDLAEECREADFLFVAIGRPRFVTADMVKP 225 (286)
T ss_pred CCCCCCCEEEEECCCccchHHHHHHHhCCcccCCCEEEEEeCC------chhHHHHHHhCCEEEEecCCCCcCCHHHcCC
Confidence 4689999999999986 59999999987 78998887654 23789999999999887 6667777766643
No 263
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=94.30 E-value=0.042 Score=47.77 Aligned_cols=38 Identities=26% Similarity=0.443 Sum_probs=34.3
Q ss_pred cCCCEEEEEcCChHHHHHHHHHccCCC-EEEEEcCCCCC
Q 027226 151 LLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWAS 188 (226)
Q Consensus 151 l~gktvgIvG~G~IG~~vA~~l~afG~-~V~~~~r~~~~ 188 (226)
-.|.|+.|.|+|.+|.+++.-+++.|+ +|+++|-.+.+
T Consensus 191 ~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~K 229 (375)
T KOG0022|consen 191 EPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDK 229 (375)
T ss_pred CCCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHH
Confidence 458999999999999999999999999 79999987544
No 264
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=94.28 E-value=0.036 Score=49.53 Aligned_cols=53 Identities=17% Similarity=0.255 Sum_probs=39.9
Q ss_pred EEEEcCChHHHHHHHHHccCC-C-EEEEEcCCCCC--------C-----------CcccChhhhcccCcEEEEe
Q 027226 156 VFILGFGNIGVELAKRLRPFG-V-KIIATKRSWAS--------H-----------SQVSCQSSGWHCKQVISIF 208 (226)
Q Consensus 156 vgIvG~G~IG~~vA~~l~afG-~-~V~~~~r~~~~--------~-----------~~~~~l~ell~~sD~v~l~ 208 (226)
|+|+|.|.+|+.+++.|...+ . +|+..+|+... . ....+|+++++.+|+++..
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~ 74 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKLLGDRVEAVQVDVNDPESLAELLRGCDVVINC 74 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT--TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhccccceeEEEEecCCHHHHHHHHhcCCEEEEC
Confidence 789999999999999998665 5 89999997544 1 1234578899999999876
No 265
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=94.27 E-value=0.075 Score=43.72 Aligned_cols=36 Identities=25% Similarity=0.283 Sum_probs=33.5
Q ss_pred cCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCC
Q 027226 151 LLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW 186 (226)
Q Consensus 151 l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~ 186 (226)
+.|+++.|.|- |.||+.+|+.+...|.+|+..+|+.
T Consensus 3 ~~~~~~lItG~~g~iG~~~a~~l~~~G~~vi~~~r~~ 39 (253)
T PRK08217 3 LKDKVIVITGGAQGLGRAMAEYLAQKGAKLALIDLNQ 39 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence 67999999998 9999999999999999999999874
No 266
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=94.21 E-value=0.13 Score=45.11 Aligned_cols=37 Identities=16% Similarity=0.162 Sum_probs=31.7
Q ss_pred cCCCEEEEEcCChHHHHHHHHHccCC-CEEEEEcCCCC
Q 027226 151 LLGKTVFILGFGNIGVELAKRLRPFG-VKIIATKRSWA 187 (226)
Q Consensus 151 l~gktvgIvG~G~IG~~vA~~l~afG-~~V~~~~r~~~ 187 (226)
+..++|+|||.|++|..+|..+..-| ++|..+|.++.
T Consensus 4 ~~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~ 41 (321)
T PTZ00082 4 IKRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKN 41 (321)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCc
Confidence 45579999999999999999988667 48999998765
No 267
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=94.21 E-value=0.078 Score=44.04 Aligned_cols=37 Identities=30% Similarity=0.445 Sum_probs=33.6
Q ss_pred ccCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCC
Q 027226 150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW 186 (226)
Q Consensus 150 ~l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~ 186 (226)
.+.||++.|.|- |.||+++|++|..-|++|+..+|+.
T Consensus 7 ~~~~k~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~~ 44 (255)
T PRK07523 7 DLTGRRALVTGSSQGIGYALAEGLAQAGAEVILNGRDP 44 (255)
T ss_pred CCCCCEEEEECCcchHHHHHHHHHHHcCCEEEEEeCCH
Confidence 578999999985 9999999999999999999999864
No 268
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=94.19 E-value=0.065 Score=40.91 Aligned_cols=31 Identities=35% Similarity=0.572 Sum_probs=28.4
Q ss_pred EEEEEcCChHHHHHHHHHccCCC-EEEEEcCC
Q 027226 155 TVFILGFGNIGVELAKRLRPFGV-KIIATKRS 185 (226)
Q Consensus 155 tvgIvG~G~IG~~vA~~l~afG~-~V~~~~r~ 185 (226)
+|.|+|.|.+|.++|+.|...|. ++..+|..
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d 32 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFD 32 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCC
Confidence 58999999999999999999999 69999875
No 269
>PRK08291 ectoine utilization protein EutC; Validated
Probab=94.17 E-value=0.077 Score=46.58 Aligned_cols=57 Identities=11% Similarity=-0.021 Sum_probs=44.0
Q ss_pred CCCEEEEEcCChHHHHHHHHHc-cCCC-EEEEEcCCCCCC------------C---cccChhhhcccCcEEEEe
Q 027226 152 LGKTVFILGFGNIGVELAKRLR-PFGV-KIIATKRSWASH------------S---QVSCQSSGWHCKQVISIF 208 (226)
Q Consensus 152 ~gktvgIvG~G~IG~~vA~~l~-afG~-~V~~~~r~~~~~------------~---~~~~l~ell~~sD~v~l~ 208 (226)
..++++|+|.|.+|+..+..+. ..+. +|..|+|+.... . ...++++++..+|+++..
T Consensus 131 ~~~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~~~~~g~~v~~~~d~~~al~~aDiVi~a 204 (330)
T PRK08291 131 DASRAAVIGAGEQARLQLEALTLVRPIREVRVWARDAAKAEAYAADLRAELGIPVTVARDVHEAVAGADIIVTT 204 (330)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHhhccCceEEEeCCHHHHHccCCEEEEe
Confidence 3489999999999999888887 4665 799999984432 1 135677888899999877
No 270
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=94.14 E-value=0.05 Score=44.76 Aligned_cols=43 Identities=26% Similarity=0.184 Sum_probs=36.5
Q ss_pred CCCCCCCccCCCEEEEEcCChHHHHHHHHHccCCCE-EEEEcCC
Q 027226 143 LGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVK-IIATKRS 185 (226)
Q Consensus 143 w~~~~~~~l~gktvgIvG~G~IG~~vA~~l~afG~~-V~~~~r~ 185 (226)
|.......|..++|+|+|.|.+|..+|+.|...|.. +..+|..
T Consensus 18 ~g~~~q~~L~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D 61 (212)
T PRK08644 18 HTPKLLEKLKKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD 61 (212)
T ss_pred cCHHHHHHHhCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 333345689999999999999999999999988984 8888886
No 271
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=94.13 E-value=0.13 Score=48.40 Aligned_cols=46 Identities=24% Similarity=0.289 Sum_probs=38.2
Q ss_pred CCCCCCCCCccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCC
Q 027226 141 KKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW 186 (226)
Q Consensus 141 ~~w~~~~~~~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~ 186 (226)
..|.........|++|.|||.|.+|-..|..|+..|.+|+.+++..
T Consensus 125 ~~~~~~~~~~~~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~ 170 (564)
T PRK12771 125 NGWKFPAPAPDTGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGP 170 (564)
T ss_pred cCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCC
Confidence 4565443345679999999999999999999999999999999754
No 272
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=94.13 E-value=0.029 Score=50.48 Aligned_cols=44 Identities=23% Similarity=0.333 Sum_probs=37.0
Q ss_pred CCCCCCCCccCCCEEEEEcCChHHHHHHHHHccCCC-EEEEEcCC
Q 027226 142 KLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRS 185 (226)
Q Consensus 142 ~w~~~~~~~l~gktvgIvG~G~IG~~vA~~l~afG~-~V~~~~r~ 185 (226)
.|.......|.+++|.|+|.|.+|..+|+.|...|. ++..+|..
T Consensus 31 ~~g~~~q~~L~~~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~D 75 (392)
T PRK07878 31 DVGVDGQKRLKNARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFD 75 (392)
T ss_pred hcCHHHHHHHhcCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCC
Confidence 354444578999999999999999999999998888 68888874
No 273
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=94.08 E-value=0.07 Score=40.88 Aligned_cols=31 Identities=35% Similarity=0.488 Sum_probs=29.3
Q ss_pred EEEEcCChHHHHHHHHHccCCCEEEEEcCCC
Q 027226 156 VFILGFGNIGVELAKRLRPFGVKIIATKRSW 186 (226)
Q Consensus 156 vgIvG~G~IG~~vA~~l~afG~~V~~~~r~~ 186 (226)
|.|+|.|.||..+|-+|+.-|.+|..++|+.
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~ 31 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP 31 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc
Confidence 6899999999999999988999999999976
No 274
>PRK06841 short chain dehydrogenase; Provisional
Probab=94.06 E-value=0.076 Score=43.98 Aligned_cols=38 Identities=26% Similarity=0.344 Sum_probs=34.3
Q ss_pred ccCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCCC
Q 027226 150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA 187 (226)
Q Consensus 150 ~l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~~ 187 (226)
.+.+|++.|.|- |.||+++|+.|...|++|+..+|+..
T Consensus 12 ~~~~k~vlItGas~~IG~~la~~l~~~G~~Vi~~~r~~~ 50 (255)
T PRK06841 12 DLSGKVAVVTGGASGIGHAIAELFAAKGARVALLDRSED 50 (255)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 578999999995 99999999999999999999998643
No 275
>PRK12828 short chain dehydrogenase; Provisional
Probab=94.02 E-value=0.077 Score=43.20 Aligned_cols=39 Identities=33% Similarity=0.394 Sum_probs=34.1
Q ss_pred ccCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCCCC
Q 027226 150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWAS 188 (226)
Q Consensus 150 ~l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~~~ 188 (226)
.+.+||+.|.|- |.||+.+++.+..-|.+|+..+|+..+
T Consensus 4 ~~~~k~vlItGatg~iG~~la~~l~~~G~~v~~~~r~~~~ 43 (239)
T PRK12828 4 SLQGKVVAITGGFGGLGRATAAWLAARGARVALIGRGAAP 43 (239)
T ss_pred CCCCCEEEEECCCCcHhHHHHHHHHHCCCeEEEEeCChHh
Confidence 477899999985 999999999999889999999996543
No 276
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=94.01 E-value=0.062 Score=39.22 Aligned_cols=32 Identities=34% Similarity=0.694 Sum_probs=27.6
Q ss_pred EEEEcCChHHHHHHHHHccCCCEEEEEcCCCC
Q 027226 156 VFILGFGNIGVELAKRLRPFGVKIIATKRSWA 187 (226)
Q Consensus 156 vgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~ 187 (226)
+.|+|+|++|+.+++.|+..+.+|+.+++.+.
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~ 32 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPE 32 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSHH
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcH
Confidence 57999999999999999997779999999753
No 277
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=93.99 E-value=0.066 Score=46.19 Aligned_cols=38 Identities=24% Similarity=0.261 Sum_probs=34.0
Q ss_pred CccCCCEEEEEcCChHHHHHHHHHccCCC-EEEEEcCCC
Q 027226 149 ETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSW 186 (226)
Q Consensus 149 ~~l~gktvgIvG~G~IG~~vA~~l~afG~-~V~~~~r~~ 186 (226)
..+.+|++.|+|.|..+++++-.+...|+ +|..++|+.
T Consensus 120 ~~~~~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~ 158 (288)
T PRK12749 120 FDIKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRD 158 (288)
T ss_pred CCcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence 35788999999999999999998988897 799999985
No 278
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.97 E-value=0.17 Score=43.77 Aligned_cols=68 Identities=12% Similarity=0.119 Sum_probs=54.5
Q ss_pred CCccCCCEEEEEcCCh-HHHHHHHHHcc----CCCEEEEEcCCCCCCCcccChhhhcccCcEEEEe-ccCCccccccccc
Q 027226 148 GETLLGKTVFILGFGN-IGVELAKRLRP----FGVKIIATKRSWASHSQVSCQSSGWHCKQVISIF-NEKGFSSGEYCSR 221 (226)
Q Consensus 148 ~~~l~gktvgIvG~G~-IG~~vA~~l~a----fG~~V~~~~r~~~~~~~~~~l~ell~~sD~v~l~-~~~d~i~~~~~~~ 221 (226)
+.++.||++.|||-+. +|+-+|.+|.. -|++|....... .++.+.++.||+++.. ....+|..++++.
T Consensus 154 ~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~atVt~~hs~t------~~l~~~~~~ADIvI~Avg~~~li~~~~vk~ 227 (295)
T PRK14174 154 NIETKGKHCVVVGRSNIVGKPMANLMLQKLKESNCTVTICHSAT------KDIPSYTRQADILIAAIGKARFITADMVKP 227 (295)
T ss_pred CCCCCCCEEEEECCCCcchHHHHHHHHhccccCCCEEEEEeCCc------hhHHHHHHhCCEEEEecCccCccCHHHcCC
Confidence 4589999999999986 59999999876 588888765542 3689999999999888 6667887777744
No 279
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.96 E-value=0.17 Score=43.81 Aligned_cols=68 Identities=12% Similarity=0.193 Sum_probs=54.5
Q ss_pred CCccCCCEEEEEcCCh-HHHHHHHHHccC----CCEEEEEcCCCCCCCcccChhhhcccCcEEEEe-ccCCccccccccc
Q 027226 148 GETLLGKTVFILGFGN-IGVELAKRLRPF----GVKIIATKRSWASHSQVSCQSSGWHCKQVISIF-NEKGFSSGEYCSR 221 (226)
Q Consensus 148 ~~~l~gktvgIvG~G~-IG~~vA~~l~af----G~~V~~~~r~~~~~~~~~~l~ell~~sD~v~l~-~~~d~i~~~~~~~ 221 (226)
+.++.||++.|||-+. +|+-+|.+|..- ++.|...... ..++.+..++||+++.. ....+|..++++.
T Consensus 156 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~atVtv~hs~------T~~l~~~~~~ADIvVsAvGkp~~i~~~~ik~ 229 (297)
T PRK14168 156 GVETSGAEVVVVGRSNIVGKPIANMMTQKGPGANATVTIVHTR------SKNLARHCQRADILIVAAGVPNLVKPEWIKP 229 (297)
T ss_pred CCCCCCCEEEEECCCCcccHHHHHHHHhcccCCCCEEEEecCC------CcCHHHHHhhCCEEEEecCCcCccCHHHcCC
Confidence 5689999999999885 699999999865 7999876443 23688999999999986 6777777766653
No 280
>COG0027 PurT Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) [Nucleotide transport and metabolism]
Probab=93.85 E-value=0.1 Score=45.36 Aligned_cols=38 Identities=32% Similarity=0.505 Sum_probs=34.5
Q ss_pred CCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC
Q 027226 152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH 189 (226)
Q Consensus 152 ~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~ 189 (226)
..++|.++|-|..|+++|=-+..+|.+|+++||+....
T Consensus 11 ~a~kvmLLGSGELGKEvaIe~QRLG~eViAVDrY~~AP 48 (394)
T COG0027 11 QATKVMLLGSGELGKEVAIEAQRLGVEVIAVDRYANAP 48 (394)
T ss_pred CCeEEEEecCCccchHHHHHHHhcCCEEEEecCcCCCh
Confidence 45679999999999999999999999999999997654
No 281
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=93.80 E-value=0.083 Score=50.22 Aligned_cols=59 Identities=29% Similarity=0.375 Sum_probs=45.8
Q ss_pred chhHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCC---CCCccCCCEEEEEcCChHHHHHHHHHccCCC-EEEEEcC
Q 027226 113 AASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVP---TGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKR 184 (226)
Q Consensus 113 ~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~---~~~~l~gktvgIvG~G~IG~~vA~~l~afG~-~V~~~~r 184 (226)
....||-++-+=|-+. +|+-. ....|++.+|+|+|.|.+|..+|+.|.+.|. +++.+|.
T Consensus 308 P~~la~~avdlnlkLm-------------kWRllP~l~~ekL~~~kVLIvGaGGLGs~VA~~La~~GVg~ItlVD~ 370 (664)
T TIGR01381 308 PKRLAERSVDLNLKLM-------------KWRLHPDLQLERYSQLKVLLLGAGTLGCNVARCLIGWGVRHITFVDN 370 (664)
T ss_pred HHHHHHHHHHHHHHHH-------------hhhcCChhhHHHHhcCeEEEECCcHHHHHHHHHHHHcCCCeEEEEcC
Confidence 4556777666655555 36532 2367899999999999999999999999999 5888876
No 282
>PLN00106 malate dehydrogenase
Probab=93.79 E-value=0.25 Score=43.37 Aligned_cols=57 Identities=16% Similarity=0.116 Sum_probs=41.9
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHcc--CCCEEEEEcCCCCCC-------------C----cccChhhhcccCcEEEEe
Q 027226 152 LGKTVFILGF-GNIGVELAKRLRP--FGVKIIATKRSWASH-------------S----QVSCQSSGWHCKQVISIF 208 (226)
Q Consensus 152 ~gktvgIvG~-G~IG~~vA~~l~a--fG~~V~~~~r~~~~~-------------~----~~~~l~ell~~sD~v~l~ 208 (226)
..++|+|+|. |+||..+|-.|.. +.-++..+|...... . +..++.+.++.+|++++.
T Consensus 17 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~~~g~a~Dl~~~~~~~~i~~~~~~~d~~~~l~~aDiVVit 93 (323)
T PLN00106 17 PGFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANTPGVAADVSHINTPAQVRGFLGDDQLGDALKGADLVIIP 93 (323)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCCCCeeEchhhhCCcCceEEEEeCCCCHHHHcCCCCEEEEe
Confidence 4479999999 9999999999984 444899999865211 0 122335678889998887
No 283
>smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain. GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold.
Probab=93.77 E-value=0.11 Score=40.50 Aligned_cols=30 Identities=30% Similarity=0.427 Sum_probs=25.1
Q ss_pred EEEEEcCChHHHHHHHHHc-cCCCEEEEEcC
Q 027226 155 TVFILGFGNIGVELAKRLR-PFGVKIIATKR 184 (226)
Q Consensus 155 tvgIvG~G~IG~~vA~~l~-afG~~V~~~~r 184 (226)
+|||+|+|+||+.+++.+. .-++++.+..-
T Consensus 2 kv~I~G~GriGr~v~~~~~~~~~~~lvai~d 32 (149)
T smart00846 2 KVGINGFGRIGRLVLRALLERPDIEVVAIND 32 (149)
T ss_pred EEEEECcCHHHHHHHHHHHhCCCCEEEEeec
Confidence 7999999999999999887 46788777543
No 284
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=93.75 E-value=0.073 Score=48.26 Aligned_cols=33 Identities=27% Similarity=0.442 Sum_probs=30.2
Q ss_pred EEEEEcCChHHHHHHHHHccCCCEEEEEcCCCC
Q 027226 155 TVFILGFGNIGVELAKRLRPFGVKIIATKRSWA 187 (226)
Q Consensus 155 tvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~ 187 (226)
++.|+|+|.+|.++|+.|+..|.+|.++|....
T Consensus 1 ~~~~iG~G~~G~a~a~~l~~~G~~V~~sD~~~~ 33 (433)
T TIGR01087 1 KILILGLGKTGRAVARFLHKKGAEVTVTDLKPN 33 (433)
T ss_pred CEEEEEeCHhHHHHHHHHHHCCCEEEEEeCCCC
Confidence 378999999999999999999999999997644
No 285
>PRK08703 short chain dehydrogenase; Provisional
Probab=93.73 E-value=0.11 Score=42.67 Aligned_cols=39 Identities=28% Similarity=0.411 Sum_probs=34.6
Q ss_pred CccCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCCC
Q 027226 149 ETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA 187 (226)
Q Consensus 149 ~~l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~~ 187 (226)
..++++++.|.|- |.||+++|+.+...|++|++++|+..
T Consensus 2 ~~l~~k~vlItG~sggiG~~la~~l~~~g~~V~~~~r~~~ 41 (239)
T PRK08703 2 ATLSDKTILVTGASQGLGEQVAKAYAAAGATVILVARHQK 41 (239)
T ss_pred CCCCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCChH
Confidence 3578899999985 89999999999999999999999763
No 286
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=93.72 E-value=0.11 Score=42.51 Aligned_cols=38 Identities=26% Similarity=0.318 Sum_probs=33.8
Q ss_pred ccCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCCC
Q 027226 150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA 187 (226)
Q Consensus 150 ~l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~~ 187 (226)
++.++++.|.|- |.||+++++.|..-|++|++.+|+..
T Consensus 2 ~~~~~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~~~ 40 (238)
T PRK05786 2 RLKGKKVAIIGVSEGLGYAVAYFALKEGAQVCINSRNEN 40 (238)
T ss_pred CcCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 367899999987 77999999999999999999999653
No 287
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=93.70 E-value=0.11 Score=42.76 Aligned_cols=37 Identities=30% Similarity=0.426 Sum_probs=33.6
Q ss_pred ccCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCC
Q 027226 150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW 186 (226)
Q Consensus 150 ~l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~ 186 (226)
.+.||++.|.|- |.||+++|+.|..-|++|+..+|+.
T Consensus 2 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~vi~~~r~~ 39 (248)
T TIGR01832 2 SLEGKVALVTGANTGLGQGIAVGLAEAGADIVGAGRSE 39 (248)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCch
Confidence 378999999997 7999999999999999999999864
No 288
>PRK06523 short chain dehydrogenase; Provisional
Probab=93.68 E-value=0.11 Score=43.13 Aligned_cols=39 Identities=31% Similarity=0.435 Sum_probs=34.7
Q ss_pred CccCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCCC
Q 027226 149 ETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA 187 (226)
Q Consensus 149 ~~l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~~ 187 (226)
..++||++.|.|- |.||+++|+.|..-|++|+..+|+..
T Consensus 5 ~~~~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~r~~~ 44 (260)
T PRK06523 5 LELAGKRALVTGGTKGIGAATVARLLEAGARVVTTARSRP 44 (260)
T ss_pred cCCCCCEEEEECCCCchhHHHHHHHHHCCCEEEEEeCChh
Confidence 4688999999995 89999999999999999999998643
No 289
>PRK06057 short chain dehydrogenase; Provisional
Probab=93.67 E-value=0.12 Score=43.05 Aligned_cols=38 Identities=26% Similarity=0.381 Sum_probs=34.4
Q ss_pred ccCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCCC
Q 027226 150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA 187 (226)
Q Consensus 150 ~l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~~ 187 (226)
.+.|+++.|.|- |.||+++++.+...|++|+..+|+..
T Consensus 4 ~~~~~~vlItGasggIG~~~a~~l~~~G~~v~~~~r~~~ 42 (255)
T PRK06057 4 RLAGRVAVITGGGSGIGLATARRLAAEGATVVVGDIDPE 42 (255)
T ss_pred cCCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 478999999998 99999999999999999999988643
No 290
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=93.58 E-value=0.1 Score=46.17 Aligned_cols=31 Identities=19% Similarity=0.408 Sum_probs=25.5
Q ss_pred CEEEEEcCChHHHHHHHHHcc-CCCEEEEEcC
Q 027226 154 KTVFILGFGNIGVELAKRLRP-FGVKIIATKR 184 (226)
Q Consensus 154 ktvgIvG~G~IG~~vA~~l~a-fG~~V~~~~r 184 (226)
.+|||+|+|+||+.+++.+.. =+|++.+...
T Consensus 2 ikVaI~G~GrIGr~va~al~~~~d~eLvav~d 33 (341)
T PRK04207 2 IKVGVNGYGTIGKRVADAVAAQPDMELVGVAK 33 (341)
T ss_pred eEEEEECCCHHHHHHHHHHhcCCCcEEEEEEC
Confidence 379999999999999998874 4788777654
No 291
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=93.54 E-value=0.12 Score=44.82 Aligned_cols=56 Identities=13% Similarity=0.146 Sum_probs=44.3
Q ss_pred CCEEEEEcCChHHHHHHHHHc-cCCC-EEEEEcCCCCCC---------------CcccChhhhcccCcEEEEe
Q 027226 153 GKTVFILGFGNIGVELAKRLR-PFGV-KIIATKRSWASH---------------SQVSCQSSGWHCKQVISIF 208 (226)
Q Consensus 153 gktvgIvG~G~IG~~vA~~l~-afG~-~V~~~~r~~~~~---------------~~~~~l~ell~~sD~v~l~ 208 (226)
-+++||+|.|..|+.-++.+. -+.. +|..|+|++... ....+.++.+..||+|+..
T Consensus 117 a~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~~~~~~~~~~~v~~~~~~~eav~~aDIV~ta 189 (301)
T PRK06407 117 VENFTIIGSGFQAETQLEGMASVYNPKRIRVYSRNFDHARAFAERFSKEFGVDIRPVDNAEAALRDADTITSI 189 (301)
T ss_pred CcEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEe
Confidence 589999999999998877775 4566 699999986542 1135688899999999887
No 292
>PRK06823 ornithine cyclodeaminase; Validated
Probab=93.53 E-value=0.13 Score=44.98 Aligned_cols=56 Identities=14% Similarity=0.001 Sum_probs=44.0
Q ss_pred CCEEEEEcCChHHHHHHHHHc-cCCC-EEEEEcCCCCCC--------------CcccChhhhcccCcEEEEe
Q 027226 153 GKTVFILGFGNIGVELAKRLR-PFGV-KIIATKRSWASH--------------SQVSCQSSGWHCKQVISIF 208 (226)
Q Consensus 153 gktvgIvG~G~IG~~vA~~l~-afG~-~V~~~~r~~~~~--------------~~~~~l~ell~~sD~v~l~ 208 (226)
-++++|+|.|..++.-++.+. .+.. +|..|+|++... ....+.++.++.+|+|+..
T Consensus 128 ~~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIV~ta 199 (315)
T PRK06823 128 VSAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYAQALGFAVNTTLDAAEVAHAANLIVTT 199 (315)
T ss_pred CCEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhcCCcEEEECCHHHHhcCCCEEEEe
Confidence 489999999999999888775 4444 799999986552 0135678889999999887
No 293
>PRK06949 short chain dehydrogenase; Provisional
Probab=93.53 E-value=0.13 Score=42.63 Aligned_cols=38 Identities=26% Similarity=0.440 Sum_probs=34.2
Q ss_pred CccCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCC
Q 027226 149 ETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW 186 (226)
Q Consensus 149 ~~l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~ 186 (226)
..+.+|++.|.|- |.||+++++.|...|++|+..+|+.
T Consensus 5 ~~~~~k~ilItGasg~IG~~~a~~l~~~G~~Vi~~~r~~ 43 (258)
T PRK06949 5 INLEGKVALVTGASSGLGARFAQVLAQAGAKVVLASRRV 43 (258)
T ss_pred cCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 3578999999995 9999999999999999999998864
No 294
>PRK14852 hypothetical protein; Provisional
Probab=93.52 E-value=0.096 Score=52.04 Aligned_cols=43 Identities=21% Similarity=0.240 Sum_probs=36.1
Q ss_pred CCCCCCCccCCCEEEEEcCChHHHHHHHHHccCCC-EEEEEcCC
Q 027226 143 LGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRS 185 (226)
Q Consensus 143 w~~~~~~~l~gktvgIvG~G~IG~~vA~~l~afG~-~V~~~~r~ 185 (226)
|.......|+.++|+|+|+|.+|..+|+.|...|. ++..+|..
T Consensus 322 ig~e~Q~kL~~srVlVvGlGGlGs~ia~~LAraGVG~I~L~D~D 365 (989)
T PRK14852 322 VDYAGQRRLLRSRVAIAGLGGVGGIHLMTLARTGIGNFNLADFD 365 (989)
T ss_pred cCHHHHHHHhcCcEEEECCcHHHHHHHHHHHHcCCCeEEEEcCC
Confidence 55444578999999999999999999999998888 57776663
No 295
>PRK06153 hypothetical protein; Provisional
Probab=93.48 E-value=0.08 Score=47.41 Aligned_cols=37 Identities=22% Similarity=0.311 Sum_probs=33.8
Q ss_pred CccCCCEEEEEcCChHHHHHHHHHccCCC-EEEEEcCC
Q 027226 149 ETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRS 185 (226)
Q Consensus 149 ~~l~gktvgIvG~G~IG~~vA~~l~afG~-~V~~~~r~ 185 (226)
..|++++|+|||+|.+|..++..|...|. +++.+|..
T Consensus 172 ~kL~~~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D 209 (393)
T PRK06153 172 AKLEGQRIAIIGLGGTGSYILDLVAKTPVREIHLFDGD 209 (393)
T ss_pred HHHhhCcEEEEcCCccHHHHHHHHHHcCCCEEEEECCC
Confidence 47899999999999999999999999998 78888874
No 296
>CHL00194 ycf39 Ycf39; Provisional
Probab=93.48 E-value=0.11 Score=44.93 Aligned_cols=54 Identities=13% Similarity=0.215 Sum_probs=42.1
Q ss_pred EEEEEc-CChHHHHHHHHHccCCCEEEEEcCCCCCC---------------CcccChhhhcccCcEEEEe
Q 027226 155 TVFILG-FGNIGVELAKRLRPFGVKIIATKRSWASH---------------SQVSCQSSGWHCKQVISIF 208 (226)
Q Consensus 155 tvgIvG-~G~IG~~vA~~l~afG~~V~~~~r~~~~~---------------~~~~~l~ell~~sD~v~l~ 208 (226)
+|.|.| .|.||+.+++.|..-|.+|++.+|+.... .+..++.+.+..+|++..+
T Consensus 2 kIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~~~l~~~~v~~v~~Dl~d~~~l~~al~g~d~Vi~~ 71 (317)
T CHL00194 2 SLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKASFLKEWGAELVYGDLSLPETLPPSFKGVTAIIDA 71 (317)
T ss_pred EEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHHhhhHhhcCCEEEECCCCCHHHHHHHHCCCCEEEEC
Confidence 688999 69999999999998899999999874321 1234466778888987765
No 297
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=93.48 E-value=0.088 Score=45.20 Aligned_cols=30 Identities=23% Similarity=0.385 Sum_probs=28.6
Q ss_pred EEEEEcCChHHHHHHHHHccCCCEEEEEcC
Q 027226 155 TVFILGFGNIGVELAKRLRPFGVKIIATKR 184 (226)
Q Consensus 155 tvgIvG~G~IG~~vA~~l~afG~~V~~~~r 184 (226)
+|+|+|.|.+|..+|..|..-|.+|+.++|
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g~~V~~~~r 31 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAGRDVTFLVR 31 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCCCceEEEec
Confidence 699999999999999999988999999998
No 298
>PRK06046 alanine dehydrogenase; Validated
Probab=93.47 E-value=0.12 Score=45.38 Aligned_cols=55 Identities=18% Similarity=0.146 Sum_probs=41.6
Q ss_pred CCEEEEEcCChHHHHHHHHHc-cCCC-EEEEEcCCCCCC------C---------cccChhhhcccCcEEEEe
Q 027226 153 GKTVFILGFGNIGVELAKRLR-PFGV-KIIATKRSWASH------S---------QVSCQSSGWHCKQVISIF 208 (226)
Q Consensus 153 gktvgIvG~G~IG~~vA~~l~-afG~-~V~~~~r~~~~~------~---------~~~~l~ell~~sD~v~l~ 208 (226)
-++|||+|.|.+|+..++.+. ..+. +|..|+|+.... . ...++++++. +|+|++.
T Consensus 129 ~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~-aDiVv~a 200 (326)
T PRK06046 129 SKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTKSSAEKFVERMSSVVGCDVTVAEDIEEACD-CDILVTT 200 (326)
T ss_pred CCEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhh-CCEEEEe
Confidence 479999999999999998886 4566 577789975331 0 1345778876 9999887
No 299
>PRK04523 N-acetylornithine carbamoyltransferase; Reviewed
Probab=93.47 E-value=0.8 Score=40.41 Aligned_cols=118 Identities=14% Similarity=0.041 Sum_probs=72.9
Q ss_pred HHHHhcCCCceEEEecCccCC------ccch-hHHHhCCcEEEecCCCCCCCchhHHHHHHHHHHHHhhcHHHHHHHHHh
Q 027226 68 SNCISRANQMKLIMQFGVGLE------GVDI-NAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQ 140 (226)
Q Consensus 68 ~~~l~~~~~Lk~I~~~~aG~d------~id~-~~~~~~gi~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~ 140 (226)
..+++++.++=.+-....|.+ +-.+ ..+.-.+++|.|..+. .+-.++.++. +.+.+.
T Consensus 99 arvls~~~D~iv~R~~~~g~~~~~~~~~~~~~~~a~~s~vPVINa~~~-~HPtQaLaDl-----~Ti~e~---------- 162 (335)
T PRK04523 99 ARVLSRYVDLIGVRAFPKFVDWSKDRQDQVLNSFAKYSTVPVINMETI-THPCQELAHA-----LALQEH---------- 162 (335)
T ss_pred HHHHHHhCcEEEEeCCccccccccchhHHHHHHHHHhCCCCEEECCCC-CChHHHHHHH-----HHHHHH----------
Confidence 455666656544444455654 1112 2234468999999664 3123333442 222221
Q ss_pred CCCCCCCCCcc-CCCEEEEEcCC-------hHHHHHHHHHccCCCEEEEEcC-CC---CCC----------------Ccc
Q 027226 141 KKLGVPTGETL-LGKTVFILGFG-------NIGVELAKRLRPFGVKIIATKR-SW---ASH----------------SQV 192 (226)
Q Consensus 141 ~~w~~~~~~~l-~gktvgIvG~G-------~IG~~vA~~l~afG~~V~~~~r-~~---~~~----------------~~~ 192 (226)
.+ .+ .|++|+|+|.| ++....+..+..|||+|....| .. .+. ...
T Consensus 163 ------~g-~~~~g~ki~i~~~gd~~~~~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 235 (335)
T PRK04523 163 ------FG-TTLRGKKYVLTWTYHPKPLNTAVANSALLIATRLGMDVTLLCPTPDYILDERYMDWAEQNAAESGGSLTVS 235 (335)
T ss_pred ------hC-CccCCCEEEEEEeccCcccccHHHHHHHHHHHHcCCEEEEECCchhhCCCHHHHHHHHHHHHHcCCeEEEE
Confidence 12 36 79999887654 6788888888999999999998 32 111 013
Q ss_pred cChhhhcccCcEEEEe
Q 027226 193 SCQSSGWHCKQVISIF 208 (226)
Q Consensus 193 ~~l~ell~~sD~v~l~ 208 (226)
.++++.++.+|+|...
T Consensus 236 ~d~~ea~~~aDvvy~~ 251 (335)
T PRK04523 236 HDIDSAYAGADVVYAK 251 (335)
T ss_pred cCHHHHhCCCCEEEec
Confidence 6778999999999886
No 300
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=93.46 E-value=0.077 Score=45.69 Aligned_cols=40 Identities=30% Similarity=0.414 Sum_probs=35.8
Q ss_pred CccCCCEEEEEcCChHHHHHHHHHccCCC-EEEEEcCCCCC
Q 027226 149 ETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWAS 188 (226)
Q Consensus 149 ~~l~gktvgIvG~G~IG~~vA~~l~afG~-~V~~~~r~~~~ 188 (226)
....|+++.|+|.|..+++++--|+..|+ +|..++|+...
T Consensus 122 ~~~~~~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~~r 162 (283)
T COG0169 122 VDVTGKRVLILGAGGAARAVAFALAEAGAKRITVVNRTRER 162 (283)
T ss_pred cccCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHH
Confidence 45689999999999999999999999996 79999997654
No 301
>PRK06398 aldose dehydrogenase; Validated
Probab=93.45 E-value=0.13 Score=42.92 Aligned_cols=39 Identities=26% Similarity=0.291 Sum_probs=34.3
Q ss_pred ccCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCCCC
Q 027226 150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWAS 188 (226)
Q Consensus 150 ~l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~~~ 188 (226)
.++||++.|.|- |.||+++|+.|..-|++|+..+|+...
T Consensus 3 ~l~gk~vlItGas~gIG~~ia~~l~~~G~~Vi~~~r~~~~ 42 (258)
T PRK06398 3 GLKDKVAIVTGGSQGIGKAVVNRLKEEGSNVINFDIKEPS 42 (258)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCccc
Confidence 578999999994 699999999999999999999987543
No 302
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=93.42 E-value=0.12 Score=45.00 Aligned_cols=55 Identities=22% Similarity=0.166 Sum_probs=40.4
Q ss_pred EEEEEcCChHHHHHHHHHccCC--CEEEEEcCCCCCCC-------cc-----------cChhhhcccCcEEEEecc
Q 027226 155 TVFILGFGNIGVELAKRLRPFG--VKIIATKRSWASHS-------QV-----------SCQSSGWHCKQVISIFNE 210 (226)
Q Consensus 155 tvgIvG~G~IG~~vA~~l~afG--~~V~~~~r~~~~~~-------~~-----------~~l~ell~~sD~v~l~~~ 210 (226)
+|+|||.|.+|..+|..+...| -+|..+|+...... .. .+. +.++.||++.+...
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~~d~-~~l~~aDiViita~ 76 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYAGDY-ADCKGADVVVITAG 76 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEeeCCH-HHhCCCCEEEEccC
Confidence 6999999999999999998888 58999998753220 00 122 44678888888733
No 303
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=93.40 E-value=0.12 Score=42.44 Aligned_cols=38 Identities=29% Similarity=0.502 Sum_probs=34.0
Q ss_pred ccCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCCC
Q 027226 150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA 187 (226)
Q Consensus 150 ~l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~~ 187 (226)
.+.++++.|.|- |.||+++++.|...|.+|++.+|+..
T Consensus 2 ~~~~~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~~ 40 (251)
T PRK07231 2 RLEGKVAIVTGASSGIGEGIARRFAAEGARVVVTDRNEE 40 (251)
T ss_pred CcCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 467899999985 89999999999999999999999753
No 304
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=93.37 E-value=0.078 Score=46.08 Aligned_cols=61 Identities=18% Similarity=0.107 Sum_probs=48.8
Q ss_pred CCccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC---------------CcccChhhhcccCcEEEEe
Q 027226 148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH---------------SQVSCQSSGWHCKQVISIF 208 (226)
Q Consensus 148 ~~~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~---------------~~~~~l~ell~~sD~v~l~ 208 (226)
......-+|.|+|.|-+|..-|+.+.++|++|...|++...- .....+++.+..+|++.-.
T Consensus 163 vpGV~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~rv~~~~st~~~iee~v~~aDlvIga 238 (371)
T COG0686 163 VPGVLPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGGRVHTLYSTPSNIEEAVKKADLVIGA 238 (371)
T ss_pred CCCCCCccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhCceeEEEEcCHHHHHHHhhhccEEEEE
Confidence 356778899999999999999999999999999999974331 1345577788888887643
No 305
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=93.34 E-value=0.11 Score=47.12 Aligned_cols=38 Identities=37% Similarity=0.336 Sum_probs=34.2
Q ss_pred ccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCC
Q 027226 150 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA 187 (226)
Q Consensus 150 ~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~ 187 (226)
.+..+++.|+|+|.+|+.+++.|...|.+|+.+++++.
T Consensus 228 ~~~~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~~ 265 (453)
T PRK09496 228 EKPVKRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDPE 265 (453)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence 35579999999999999999999999999999988754
No 306
>PTZ00245 ubiquitin activating enzyme; Provisional
Probab=93.34 E-value=0.094 Score=44.43 Aligned_cols=52 Identities=23% Similarity=0.273 Sum_probs=41.8
Q ss_pred HHHHHHHHhCCCCCCCCCccCCCEEEEEcCChHHHHHHHHHccCCC-EEEEEcCC
Q 027226 132 NEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRS 185 (226)
Q Consensus 132 ~~~~~~~~~~~w~~~~~~~l~gktvgIvG~G~IG~~vA~~l~afG~-~V~~~~r~ 185 (226)
.+|.++.+- |.......|...+|.|+|.|.+|.++|+.|...|. ++..+|..
T Consensus 7 ~RYsRQIrL--wG~EgQ~KL~~SrVLVVG~GGLGsEVAKnLaLAGVGsItIvDdD 59 (287)
T PTZ00245 7 VRYDRQIRL--WGKSTQQQLMHTSVALHGVAGAAAEAAKNLVLAGVRAVAVADEG 59 (287)
T ss_pred HHHhHHHHH--hCHHHHHHHhhCeEEEECCCchHHHHHHHHHHcCCCeEEEecCC
Confidence 345555444 77666688999999999999999999999999998 57777764
No 307
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase. This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.
Probab=93.33 E-value=0.14 Score=43.29 Aligned_cols=54 Identities=20% Similarity=0.265 Sum_probs=40.8
Q ss_pred EEEEEc-CChHHHHHHHHHccCCCEEEEEcCCCCCCCcccChhhhcccC--cEEEEe
Q 027226 155 TVFILG-FGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSGWHCK--QVISIF 208 (226)
Q Consensus 155 tvgIvG-~G~IG~~vA~~l~afG~~V~~~~r~~~~~~~~~~l~ell~~s--D~v~l~ 208 (226)
+|.|+| .|.||+.+++.|..-|.+|++++|+.-.-.....+++++... |++...
T Consensus 1 kilv~G~tG~iG~~l~~~l~~~g~~v~~~~r~~~d~~~~~~~~~~~~~~~~d~vi~~ 57 (287)
T TIGR01214 1 RILITGANGQLGRELVQQLSPEGRVVVALTSSQLDLTDPEALERLLRAIRPDAVVNT 57 (287)
T ss_pred CEEEEcCCCHHHHHHHHHHHhcCCEEEEeCCcccCCCCHHHHHHHHHhCCCCEEEEC
Confidence 477888 599999999999989999999998633323445666777765 776654
No 308
>PRK08862 short chain dehydrogenase; Provisional
Probab=93.31 E-value=0.11 Score=42.82 Aligned_cols=38 Identities=13% Similarity=0.337 Sum_probs=33.7
Q ss_pred ccCCCEEEEEcCCh-HHHHHHHHHccCCCEEEEEcCCCC
Q 027226 150 TLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWA 187 (226)
Q Consensus 150 ~l~gktvgIvG~G~-IG~~vA~~l~afG~~V~~~~r~~~ 187 (226)
.++||++.|.|-++ ||+++|+.|..-|++|+..+|+..
T Consensus 2 ~~~~k~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~~ 40 (227)
T PRK08862 2 DIKSSIILITSAGSVLGRTISCHFARLGATLILCDQDQS 40 (227)
T ss_pred CCCCeEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence 46899999999776 999999999999999999988653
No 309
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=93.30 E-value=0.41 Score=40.54 Aligned_cols=35 Identities=26% Similarity=0.437 Sum_probs=31.6
Q ss_pred CCCEEEEEcCChHHHHHHHHHccCCCE-EEEEcCCC
Q 027226 152 LGKTVFILGFGNIGVELAKRLRPFGVK-IIATKRSW 186 (226)
Q Consensus 152 ~gktvgIvG~G~IG~~vA~~l~afG~~-V~~~~r~~ 186 (226)
.|++|.|+|.|.||...++.++++|++ |++.+++.
T Consensus 120 ~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~ 155 (280)
T TIGR03366 120 KGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSP 155 (280)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCH
Confidence 689999999999999999999999997 88887654
No 310
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=93.30 E-value=0.16 Score=42.59 Aligned_cols=36 Identities=31% Similarity=0.468 Sum_probs=32.3
Q ss_pred ccCCCEEEEEcC---ChHHHHHHHHHccCCCEEEEEcCC
Q 027226 150 TLLGKTVFILGF---GNIGVELAKRLRPFGVKIIATKRS 185 (226)
Q Consensus 150 ~l~gktvgIvG~---G~IG~~vA~~l~afG~~V~~~~r~ 185 (226)
.+.||++.|.|- +.||+++|+.|..-|++|+..+|+
T Consensus 4 ~~~~k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~ 42 (257)
T PRK08594 4 SLEGKTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAG 42 (257)
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCc
Confidence 478999999997 589999999999999999988764
No 311
>PRK01713 ornithine carbamoyltransferase; Provisional
Probab=93.28 E-value=1.1 Score=39.49 Aligned_cols=59 Identities=10% Similarity=-0.006 Sum_probs=46.3
Q ss_pred ccCCCEEEEEcCC--hHHHHHHHHHccCCCEEEEEcCCCCCC-------------------CcccChhhhcccCcEEEEe
Q 027226 150 TLLGKTVFILGFG--NIGVELAKRLRPFGVKIIATKRSWASH-------------------SQVSCQSSGWHCKQVISIF 208 (226)
Q Consensus 150 ~l~gktvgIvG~G--~IG~~vA~~l~afG~~V~~~~r~~~~~-------------------~~~~~l~ell~~sD~v~l~ 208 (226)
.+.|++|+++|=+ ++....+..+..||++|....|..-.. ....++++.++.+|+|..-
T Consensus 153 ~l~gl~ia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~p~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvVyt~ 232 (334)
T PRK01713 153 PLSEISYVYIGDARNNMGNSLLLIGAKLGMDVRICAPKALLPEASLVEMCEKFAKESGARITVTDDIDKAVKGVDFVHTD 232 (334)
T ss_pred CcCCcEEEEECCCccCHHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEc
Confidence 4889999999986 578888889999999999998853111 0136778899999999873
No 312
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=93.28 E-value=0.13 Score=48.06 Aligned_cols=38 Identities=26% Similarity=0.531 Sum_probs=34.8
Q ss_pred ccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCC
Q 027226 150 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA 187 (226)
Q Consensus 150 ~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~ 187 (226)
.+.+|++.|+|.|.+|++++..|...|++|+.++|+.+
T Consensus 376 ~~~~k~vlIlGaGGagrAia~~L~~~G~~V~i~nR~~e 413 (529)
T PLN02520 376 PLAGKLFVVIGAGGAGKALAYGAKEKGARVVIANRTYE 413 (529)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence 57799999999999999999999999999999999743
No 313
>PRK02102 ornithine carbamoyltransferase; Validated
Probab=93.27 E-value=1.1 Score=39.48 Aligned_cols=59 Identities=15% Similarity=0.053 Sum_probs=47.1
Q ss_pred ccCCCEEEEEcCC--hHHHHHHHHHccCCCEEEEEcCCCCCC-------------------CcccChhhhcccCcEEEEe
Q 027226 150 TLLGKTVFILGFG--NIGVELAKRLRPFGVKIIATKRSWASH-------------------SQVSCQSSGWHCKQVISIF 208 (226)
Q Consensus 150 ~l~gktvgIvG~G--~IG~~vA~~l~afG~~V~~~~r~~~~~-------------------~~~~~l~ell~~sD~v~l~ 208 (226)
.+.|+||+++|-+ ++.+..+..+..||++|....|..-.. .-..++++.++.+|+|..-
T Consensus 152 ~l~g~~va~vGd~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~aDvvyt~ 231 (331)
T PRK02102 152 PLKGLKLAYVGDGRNNMANSLMVGGAKLGMDVRICAPKELWPEEELVALAREIAKETGAKITITEDPEEAVKGADVIYTD 231 (331)
T ss_pred CCCCCEEEEECCCcccHHHHHHHHHHHcCCEEEEECCcccccCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEc
Confidence 4789999999997 788888999999999999998743211 0135678899999999885
No 314
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=93.23 E-value=0.12 Score=45.15 Aligned_cols=32 Identities=25% Similarity=0.341 Sum_probs=29.8
Q ss_pred EEEEEcCChHHHHHHHHHccCCCEEEEEcCCC
Q 027226 155 TVFILGFGNIGVELAKRLRPFGVKIIATKRSW 186 (226)
Q Consensus 155 tvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~ 186 (226)
+|+|+|.|++|.++|..|..-|.+|..|+|+.
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~ 33 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKKISVNLWGRNH 33 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCCCeEEEEecCH
Confidence 59999999999999999998899999999964
No 315
>PRK07576 short chain dehydrogenase; Provisional
Probab=93.21 E-value=0.15 Score=42.83 Aligned_cols=38 Identities=24% Similarity=0.372 Sum_probs=34.4
Q ss_pred CccCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCC
Q 027226 149 ETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW 186 (226)
Q Consensus 149 ~~l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~ 186 (226)
.++.+|++.|.|- |.||+++++.|...|++|+..+|+.
T Consensus 5 ~~~~~k~ilItGasggIG~~la~~l~~~G~~V~~~~r~~ 43 (264)
T PRK07576 5 FDFAGKNVVVVGGTSGINLGIAQAFARAGANVAVASRSQ 43 (264)
T ss_pred ccCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence 4588999999988 8999999999999999999999864
No 316
>PRK08265 short chain dehydrogenase; Provisional
Probab=93.17 E-value=0.16 Score=42.44 Aligned_cols=38 Identities=24% Similarity=0.302 Sum_probs=34.3
Q ss_pred ccCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCCC
Q 027226 150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA 187 (226)
Q Consensus 150 ~l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~~ 187 (226)
.+++|++.|.|- |.||+++|+.|...|++|+..+|+..
T Consensus 3 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~ 41 (261)
T PRK08265 3 GLAGKVAIVTGGATLIGAAVARALVAAGARVAIVDIDAD 41 (261)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 478999999986 89999999999999999999998754
No 317
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=93.16 E-value=0.14 Score=40.10 Aligned_cols=57 Identities=12% Similarity=0.154 Sum_probs=45.7
Q ss_pred CCCEEEEEc--CChHHHHHHHHHccCCCEEEEEcCCCC--CC-------------------CcccChhhhcccCcEEEEe
Q 027226 152 LGKTVFILG--FGNIGVELAKRLRPFGVKIIATKRSWA--SH-------------------SQVSCQSSGWHCKQVISIF 208 (226)
Q Consensus 152 ~gktvgIvG--~G~IG~~vA~~l~afG~~V~~~~r~~~--~~-------------------~~~~~l~ell~~sD~v~l~ 208 (226)
.|+||+++| .+++...++..+..||++|....|..- +. .-..++++.++.+|++...
T Consensus 1 ~gl~i~~vGD~~~rv~~Sl~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~e~l~~aDvvy~~ 80 (158)
T PF00185_consen 1 KGLKIAYVGDGHNRVAHSLIELLAKFGMEVVLIAPEGLRYPPDPEVLEKAKKNAKKNGGKITITDDIEEALKGADVVYTD 80 (158)
T ss_dssp TTEEEEEESSTTSHHHHHHHHHHHHTTSEEEEESSGGGGGSHHHHHHHHHHHHHHHHTTEEEEESSHHHHHTT-SEEEEE
T ss_pred CCCEEEEECCCCChHHHHHHHHHHHcCCEEEEECCCcccCCCCHHHHHHHHHHHHHhCCCeEEEeCHHHhcCCCCEEEEc
Confidence 489999999 489999999999999999999988651 11 0135788999999998876
No 318
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=93.15 E-value=0.15 Score=41.85 Aligned_cols=38 Identities=26% Similarity=0.385 Sum_probs=34.0
Q ss_pred CccCCCEEEEEc-CChHHHHHHHHHccCCCEEEEEcCCC
Q 027226 149 ETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW 186 (226)
Q Consensus 149 ~~l~gktvgIvG-~G~IG~~vA~~l~afG~~V~~~~r~~ 186 (226)
+.+.++++.|.| .|.||+.+++.|..-|.+|++.+|+.
T Consensus 2 ~~~~~~~ilItGasg~iG~~l~~~l~~~g~~V~~~~r~~ 40 (251)
T PRK12826 2 RDLEGRVALVTGAARGIGRAIAVRLAADGAEVIVVDICG 40 (251)
T ss_pred CCCCCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCH
Confidence 346789999999 79999999999999999999999874
No 319
>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function.; PDB: 3L5O_B 3NPG_A.
Probab=93.15 E-value=0.12 Score=40.12 Aligned_cols=58 Identities=14% Similarity=0.098 Sum_probs=42.5
Q ss_pred ccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC------CcccChhhhcccCcEEEEecc
Q 027226 150 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH------SQVSCQSSGWHCKQVISIFNE 210 (226)
Q Consensus 150 ~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~------~~~~~l~ell~~sD~v~l~~~ 210 (226)
...|++|++||+ + +.++++++.-+.+|..+++.+... .....-+++++.||++.+-.+
T Consensus 8 ~~~~~~V~~VG~--f-~P~~~~l~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~l~~aD~viiTGs 71 (147)
T PF04016_consen 8 IGPGDKVGMVGY--F-QPLVEKLKERGAEVRVFDLNPDNIGEEPGDVPDEDAEEILPWADVVIITGS 71 (147)
T ss_dssp TTTTSEEEEES-----HCCHHHHCCCCSEEEEEESSGGG--SSCT-EEGGGHHHHGGG-SEEEEECH
T ss_pred hcCCCEEEEEcC--c-HHHHHHHhcCCCCEEEEECCCCCCCCCCCcCCHHHHHHHHccCCEEEEEee
Confidence 457899999996 1 127888888899999999987332 234566789999999988844
No 320
>PRK09186 flagellin modification protein A; Provisional
Probab=93.14 E-value=0.13 Score=42.64 Aligned_cols=36 Identities=39% Similarity=0.468 Sum_probs=32.6
Q ss_pred cCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCC
Q 027226 151 LLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW 186 (226)
Q Consensus 151 l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~ 186 (226)
+.+|++.|.|- |.||+++|+.|..-|++|++.+|+.
T Consensus 2 ~~~k~vlItGas~giG~~~a~~l~~~g~~v~~~~r~~ 38 (256)
T PRK09186 2 LKGKTILITGAGGLIGSALVKAILEAGGIVIAADIDK 38 (256)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecCh
Confidence 57899999996 7999999999999999999998864
No 321
>PRK05717 oxidoreductase; Validated
Probab=93.11 E-value=0.16 Score=42.13 Aligned_cols=39 Identities=18% Similarity=0.274 Sum_probs=34.7
Q ss_pred CCccCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCC
Q 027226 148 GETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW 186 (226)
Q Consensus 148 ~~~l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~ 186 (226)
...+.||++.|.|- |.||+++|+.|..-|++|+..+++.
T Consensus 5 ~~~~~~k~vlItG~sg~IG~~~a~~l~~~g~~v~~~~~~~ 44 (255)
T PRK05717 5 NPGHNGRVALVTGAARGIGLGIAAWLIAEGWQVVLADLDR 44 (255)
T ss_pred CcccCCCEEEEeCCcchHHHHHHHHHHHcCCEEEEEcCCH
Confidence 45788999999995 8999999999999999999998764
No 322
>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2. This enzyme is an alternative to PurN (TIGR00639)
Probab=93.11 E-value=0.14 Score=45.49 Aligned_cols=34 Identities=35% Similarity=0.586 Sum_probs=31.3
Q ss_pred EEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCC
Q 027226 155 TVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS 188 (226)
Q Consensus 155 tvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~ 188 (226)
+|||+|-|..|+.+++.++.+|++|+.+++.+..
T Consensus 1 kililG~g~~~~~l~~aa~~~G~~v~~~d~~~~~ 34 (380)
T TIGR01142 1 RVLLLGSGELGKEVAIEAQRLGVEVIAVDRYANA 34 (380)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCC
Confidence 5899999999999999999999999999997644
No 323
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=93.06 E-value=0.11 Score=45.03 Aligned_cols=33 Identities=33% Similarity=0.363 Sum_probs=30.4
Q ss_pred CEEEEEcCChHHHHHHHHHccCCCEEEEEcCCC
Q 027226 154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSW 186 (226)
Q Consensus 154 ktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~ 186 (226)
.+|+|+|.|.||.-+|-+|..-|.+|..+.|+.
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~ 35 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDR 35 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCeEEEEech
Confidence 479999999999999999998899999999964
No 324
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=93.01 E-value=0.16 Score=42.43 Aligned_cols=38 Identities=24% Similarity=0.346 Sum_probs=33.7
Q ss_pred CccCCCEEEEEcCC---hHHHHHHHHHccCCCEEEEEcCCC
Q 027226 149 ETLLGKTVFILGFG---NIGVELAKRLRPFGVKIIATKRSW 186 (226)
Q Consensus 149 ~~l~gktvgIvG~G---~IG~~vA~~l~afG~~V~~~~r~~ 186 (226)
..+.||++.|.|-+ .||+++|+.|..-|++|+..+|+.
T Consensus 6 ~~~~~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~ 46 (258)
T PRK07533 6 LPLAGKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLND 46 (258)
T ss_pred cccCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCCh
Confidence 45789999999986 799999999999999999888764
No 325
>PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.01 E-value=0.15 Score=45.99 Aligned_cols=31 Identities=19% Similarity=0.231 Sum_probs=28.6
Q ss_pred EEEEEcCChHHHHHHHHHccCCCEEEEEcCCC
Q 027226 155 TVFILGFGNIGVELAKRLRPFGVKIIATKRSW 186 (226)
Q Consensus 155 tvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~ 186 (226)
+|.|+|+|..|.++|+.|+ .|.+|+++|..+
T Consensus 2 ~v~v~G~G~sG~a~a~~L~-~G~~V~~~D~~~ 32 (401)
T PRK03815 2 KISLFGYGKTTKALAKFLK-KFGGVDIFDDKF 32 (401)
T ss_pred eEEEEeECHHHHHHHHHHh-CCCeEEEEcCCC
Confidence 5899999999999999999 999999999653
No 326
>TIGR03316 ygeW probable carbamoyltransferase YgeW. Members of this protein family include the ygeW gene product of Escherichia coli. The function is unknown. Members show homology to ornithine carbamoyltransferase (TIGR00658) and aspartate carbamoyltransferase (carbamoyltransferase), and therefore may belong to the carbamoyltransferases in function. Members often are found in a large, conserved genomic region associated with purine catabolism.
Probab=93.00 E-value=1.8 Score=38.60 Aligned_cols=59 Identities=10% Similarity=0.082 Sum_probs=44.7
Q ss_pred ccCCCEEEEEcCC--------hHHHHHHHHHccCCCEEEEEcCCCCCC-------------------CcccChhhhcccC
Q 027226 150 TLLGKTVFILGFG--------NIGVELAKRLRPFGVKIIATKRSWASH-------------------SQVSCQSSGWHCK 202 (226)
Q Consensus 150 ~l~gktvgIvG~G--------~IG~~vA~~l~afG~~V~~~~r~~~~~-------------------~~~~~l~ell~~s 202 (226)
.+.|+||+|+|.| ++.+..+..+..|||+|....|..-.. .-..++++.++.+
T Consensus 167 ~l~g~kvai~~~~d~~~gr~~~v~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~~~~~g~~~~~~~d~~ea~~~a 246 (357)
T TIGR03316 167 NLKGKKFAMTWAYSPSYGKPLSVPQGIIGLMTRFGMDVTLAHPEGYHLLPEVIEVAKKNAAENGGKFNIVNSMDEAFKDA 246 (357)
T ss_pred ccCCCEEEEEeccccccCccchHHHHHHHHHHHcCCEEEEECCCcccCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCC
Confidence 4789999999854 344667778889999999998863210 0136778999999
Q ss_pred cEEEEe
Q 027226 203 QVISIF 208 (226)
Q Consensus 203 D~v~l~ 208 (226)
|+|...
T Consensus 247 Dvvyt~ 252 (357)
T TIGR03316 247 DIVYPK 252 (357)
T ss_pred CEEEEC
Confidence 999886
No 327
>PRK08339 short chain dehydrogenase; Provisional
Probab=93.00 E-value=0.16 Score=42.65 Aligned_cols=37 Identities=30% Similarity=0.369 Sum_probs=33.1
Q ss_pred ccCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCC
Q 027226 150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW 186 (226)
Q Consensus 150 ~l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~ 186 (226)
.+.||++.|.|- |.||+++|+.|...|++|+..+|+.
T Consensus 5 ~l~~k~~lItGas~gIG~aia~~l~~~G~~V~~~~r~~ 42 (263)
T PRK08339 5 DLSGKLAFTTASSKGIGFGVARVLARAGADVILLSRNE 42 (263)
T ss_pred CCCCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCH
Confidence 478999999986 6799999999999999999998863
No 328
>PRK00856 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=92.92 E-value=1.3 Score=38.62 Aligned_cols=59 Identities=14% Similarity=0.079 Sum_probs=48.4
Q ss_pred ccCCCEEEEEcC---ChHHHHHHHHHccCCCEEEEEcCCCCCC------CcccChhhhcccCcEEEEe
Q 027226 150 TLLGKTVFILGF---GNIGVELAKRLRPFGVKIIATKRSWASH------SQVSCQSSGWHCKQVISIF 208 (226)
Q Consensus 150 ~l~gktvgIvG~---G~IG~~vA~~l~afG~~V~~~~r~~~~~------~~~~~l~ell~~sD~v~l~ 208 (226)
.+.|++|+++|= +++....+..+..||++|....|..-.. .-..++++.++.+|+|...
T Consensus 153 ~l~g~kv~~vGD~~~~~v~~Sl~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~d~~ea~~~aDvvyt~ 220 (305)
T PRK00856 153 RLEGLKVAIVGDIKHSRVARSNIQALTRLGAEVRLIAPPTLLPEGMPEYGVHTDLDEVIEDADVVMML 220 (305)
T ss_pred CCCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEECCcccCcccccceEEECCHHHHhCCCCEEEEC
Confidence 488999999987 5899999999999999999998854221 1246778999999998875
No 329
>PRK07806 short chain dehydrogenase; Provisional
Probab=92.89 E-value=0.19 Score=41.46 Aligned_cols=37 Identities=32% Similarity=0.445 Sum_probs=33.0
Q ss_pred ccCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCC
Q 027226 150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW 186 (226)
Q Consensus 150 ~l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~ 186 (226)
.+.++++.|.|- |.||+++++.|..-|.+|++.+|+.
T Consensus 3 ~~~~k~vlItGasggiG~~l~~~l~~~G~~V~~~~r~~ 40 (248)
T PRK07806 3 DLPGKTALVTGSSRGIGADTAKILAGAGAHVVVNYRQK 40 (248)
T ss_pred CCCCcEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCc
Confidence 367899999996 9999999999999999999988864
No 330
>PRK06550 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=92.88 E-value=0.18 Score=41.10 Aligned_cols=38 Identities=24% Similarity=0.389 Sum_probs=33.6
Q ss_pred ccCCCEEEEEc-CChHHHHHHHHHccCCCEEEEEcCCCC
Q 027226 150 TLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWA 187 (226)
Q Consensus 150 ~l~gktvgIvG-~G~IG~~vA~~l~afG~~V~~~~r~~~ 187 (226)
++.+|++.|.| .|.||+++|+.|..-|++|+..+|+..
T Consensus 2 ~l~~k~~lVtGas~~iG~~ia~~l~~~G~~v~~~~r~~~ 40 (235)
T PRK06550 2 EFMTKTVLITGAASGIGLAQARAFLAQGAQVYGVDKQDK 40 (235)
T ss_pred CCCCCEEEEcCCCchHHHHHHHHHHHCCCEEEEEeCCcc
Confidence 47889999998 588999999999999999999998654
No 331
>PRK08264 short chain dehydrogenase; Validated
Probab=92.85 E-value=0.15 Score=41.66 Aligned_cols=38 Identities=29% Similarity=0.422 Sum_probs=33.8
Q ss_pred ccCCCEEEEEc-CChHHHHHHHHHccCCC-EEEEEcCCCC
Q 027226 150 TLLGKTVFILG-FGNIGVELAKRLRPFGV-KIIATKRSWA 187 (226)
Q Consensus 150 ~l~gktvgIvG-~G~IG~~vA~~l~afG~-~V~~~~r~~~ 187 (226)
.+.++++.|.| .|.||+++|+.|..-|. +|+.++|+.+
T Consensus 3 ~~~~~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r~~~ 42 (238)
T PRK08264 3 DIKGKVVLVTGANRGIGRAFVEQLLARGAAKVYAAARDPE 42 (238)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCcccEEEEecChh
Confidence 46789999998 69999999999999999 9999998654
No 332
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=92.83 E-value=0.17 Score=42.22 Aligned_cols=36 Identities=25% Similarity=0.445 Sum_probs=32.7
Q ss_pred ccCCCEEEEEcCC---hHHHHHHHHHccCCCEEEEEcCC
Q 027226 150 TLLGKTVFILGFG---NIGVELAKRLRPFGVKIIATKRS 185 (226)
Q Consensus 150 ~l~gktvgIvG~G---~IG~~vA~~l~afG~~V~~~~r~ 185 (226)
.+.||++.|.|-+ .||+++|+.|..-|++|+..+|+
T Consensus 4 ~l~~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~ 42 (252)
T PRK06079 4 ILSGKKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQN 42 (252)
T ss_pred ccCCCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCc
Confidence 4789999999985 79999999999999999998775
No 333
>PRK08628 short chain dehydrogenase; Provisional
Probab=92.82 E-value=0.16 Score=42.17 Aligned_cols=39 Identities=28% Similarity=0.301 Sum_probs=34.3
Q ss_pred CccCCCEEEEEc-CChHHHHHHHHHccCCCEEEEEcCCCC
Q 027226 149 ETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWA 187 (226)
Q Consensus 149 ~~l~gktvgIvG-~G~IG~~vA~~l~afG~~V~~~~r~~~ 187 (226)
..+.|+++.|.| .|.||+++|+.|...|++|+..+|+..
T Consensus 3 ~~l~~~~ilItGasggiG~~la~~l~~~G~~v~~~~r~~~ 42 (258)
T PRK08628 3 LNLKDKVVIVTGGASGIGAAISLRLAEEGAIPVIFGRSAP 42 (258)
T ss_pred CCcCCCEEEEeCCCChHHHHHHHHHHHcCCcEEEEcCChh
Confidence 358899999998 578999999999999999999988654
No 334
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=92.79 E-value=0.27 Score=42.78 Aligned_cols=33 Identities=21% Similarity=0.276 Sum_probs=28.8
Q ss_pred CEEEEEcCChHHHHHHHHHccCCC-EEEEEcCCC
Q 027226 154 KTVFILGFGNIGVELAKRLRPFGV-KIIATKRSW 186 (226)
Q Consensus 154 ktvgIvG~G~IG~~vA~~l~afG~-~V~~~~r~~ 186 (226)
.+|+|+|.|.+|..+|..+...|. +|+.+|...
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~ 35 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVE 35 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence 579999999999999999887665 899999843
No 335
>PRK07060 short chain dehydrogenase; Provisional
Probab=92.75 E-value=0.19 Score=41.20 Aligned_cols=37 Identities=30% Similarity=0.460 Sum_probs=33.9
Q ss_pred ccCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCC
Q 027226 150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW 186 (226)
Q Consensus 150 ~l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~ 186 (226)
.+.++++.|.|. |.||+.+++.+..-|.+|+.++|+.
T Consensus 6 ~~~~~~~lItGa~g~iG~~~a~~l~~~g~~V~~~~r~~ 43 (245)
T PRK07060 6 DFSGKSVLVTGASSGIGRACAVALAQRGARVVAAARNA 43 (245)
T ss_pred ccCCCEEEEeCCcchHHHHHHHHHHHCCCEEEEEeCCH
Confidence 478899999998 8999999999999999999999875
No 336
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=92.75 E-value=0.17 Score=42.76 Aligned_cols=36 Identities=28% Similarity=0.419 Sum_probs=32.7
Q ss_pred ccCCCEEEEEcCC---hHHHHHHHHHccCCCEEEEEcCC
Q 027226 150 TLLGKTVFILGFG---NIGVELAKRLRPFGVKIIATKRS 185 (226)
Q Consensus 150 ~l~gktvgIvG~G---~IG~~vA~~l~afG~~V~~~~r~ 185 (226)
.+.||++.|.|-+ .||+++|+.|..-|++|+..+|+
T Consensus 4 ~l~~k~~lVTGas~~~GIG~aiA~~la~~Ga~V~~~~r~ 42 (271)
T PRK06505 4 LMQGKRGLIMGVANDHSIAWGIAKQLAAQGAELAFTYQG 42 (271)
T ss_pred ccCCCEEEEeCCCCCCcHHHHHHHHHHhCCCEEEEecCc
Confidence 3789999999998 69999999999999999998875
No 337
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=92.75 E-value=0.078 Score=45.30 Aligned_cols=43 Identities=19% Similarity=0.307 Sum_probs=36.8
Q ss_pred CCCCCCCccCCCEEEEEcCChHHHHHHHHHccCCC-EEEEEcCC
Q 027226 143 LGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRS 185 (226)
Q Consensus 143 w~~~~~~~l~gktvgIvG~G~IG~~vA~~l~afG~-~V~~~~r~ 185 (226)
|.......|++++|.|+|.|.+|..+|+.|...|. +++.+|..
T Consensus 20 ~G~e~~~kL~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D 63 (268)
T PRK15116 20 YGEKALQLFADAHICVVGIGGVGSWAAEALARTGIGAITLIDMD 63 (268)
T ss_pred hCHHHHHHhcCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 55444578999999999999999999999998895 78888864
No 338
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=92.74 E-value=0.15 Score=42.67 Aligned_cols=37 Identities=30% Similarity=0.399 Sum_probs=33.2
Q ss_pred CccCCCEEEEEcCChHHHHHHHHHccCCC-EEEEEcCC
Q 027226 149 ETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRS 185 (226)
Q Consensus 149 ~~l~gktvgIvG~G~IG~~vA~~l~afG~-~V~~~~r~ 185 (226)
..|.+++|.|+|+|.+|..+|+.|...|. +++.+|..
T Consensus 7 ~~L~~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D 44 (231)
T cd00755 7 EKLRNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFD 44 (231)
T ss_pred HHHhCCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 46889999999999999999999998888 78888874
No 339
>PRK07831 short chain dehydrogenase; Provisional
Probab=92.73 E-value=0.17 Score=42.14 Aligned_cols=38 Identities=26% Similarity=0.379 Sum_probs=33.4
Q ss_pred CccCCCEEEEEcC-C-hHHHHHHHHHccCCCEEEEEcCCC
Q 027226 149 ETLLGKTVFILGF-G-NIGVELAKRLRPFGVKIIATKRSW 186 (226)
Q Consensus 149 ~~l~gktvgIvG~-G-~IG~~vA~~l~afG~~V~~~~r~~ 186 (226)
..+.++++.|.|- | .||+++++.|...|++|+..+|+.
T Consensus 13 ~~~~~k~vlItG~sg~gIG~~ia~~l~~~G~~V~~~~~~~ 52 (262)
T PRK07831 13 GLLAGKVVLVTAAAGTGIGSATARRALEEGARVVISDIHE 52 (262)
T ss_pred cccCCCEEEEECCCcccHHHHHHHHHHHcCCEEEEEeCCH
Confidence 4567899999997 6 699999999999999999988764
No 340
>PRK06172 short chain dehydrogenase; Provisional
Probab=92.73 E-value=0.15 Score=42.12 Aligned_cols=38 Identities=29% Similarity=0.381 Sum_probs=34.0
Q ss_pred ccCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCCC
Q 027226 150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA 187 (226)
Q Consensus 150 ~l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~~ 187 (226)
.+.+|++.|.|. |.||+++|+.|..-|++|+..+|+..
T Consensus 4 ~l~~k~ilItGas~~iG~~ia~~l~~~G~~v~~~~r~~~ 42 (253)
T PRK06172 4 TFSGKVALVTGGAAGIGRATALAFAREGAKVVVADRDAA 42 (253)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 477899999985 79999999999999999999998753
No 341
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=92.72 E-value=0.16 Score=42.32 Aligned_cols=39 Identities=31% Similarity=0.438 Sum_probs=33.7
Q ss_pred CCccCCCEEEEEc-CChHHHHHHHHHccCCCEEEEEcCCC
Q 027226 148 GETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW 186 (226)
Q Consensus 148 ~~~l~gktvgIvG-~G~IG~~vA~~l~afG~~V~~~~r~~ 186 (226)
.....+++|.|+| .|.||+.+++.|..-|.+|+++.|+.
T Consensus 12 ~~~~~~~~ilItGasG~iG~~l~~~L~~~g~~V~~~~R~~ 51 (251)
T PLN00141 12 AENVKTKTVFVAGATGRTGKRIVEQLLAKGFAVKAGVRDV 51 (251)
T ss_pred cccccCCeEEEECCCcHHHHHHHHHHHhCCCEEEEEecCH
Confidence 3456689999999 59999999999998899999988753
No 342
>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase. Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.
Probab=92.69 E-value=0.12 Score=45.38 Aligned_cols=30 Identities=33% Similarity=0.588 Sum_probs=25.0
Q ss_pred EEEEEcCChHHHHHHHHHccC----CCEEEEEcC
Q 027226 155 TVFILGFGNIGVELAKRLRPF----GVKIIATKR 184 (226)
Q Consensus 155 tvgIvG~G~IG~~vA~~l~af----G~~V~~~~r 184 (226)
+|||+|+|+||+.+.|.+... +++|.....
T Consensus 1 ~IaInGfGrIGR~vlr~l~e~~~~~~~~vvaInd 34 (325)
T TIGR01532 1 RVAINGFGRIGRNVLRALYESGERLGIEVVALNE 34 (325)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCCeEEEEEec
Confidence 589999999999999998754 378888754
No 343
>PRK00779 ornithine carbamoyltransferase; Provisional
Probab=92.68 E-value=1.4 Score=38.33 Aligned_cols=59 Identities=14% Similarity=0.044 Sum_probs=47.9
Q ss_pred ccCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCCCCC----------------CcccChhhhcccCcEEEEe
Q 027226 150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWASH----------------SQVSCQSSGWHCKQVISIF 208 (226)
Q Consensus 150 ~l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~~~~----------------~~~~~l~ell~~sD~v~l~ 208 (226)
.+.|++|+++|= +++.+..+..+..||++|....|..-.. ....++++.++.+|+|...
T Consensus 149 ~l~gl~i~~vGd~~~v~~Sl~~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvy~~ 224 (304)
T PRK00779 149 SLKGLKVAWVGDGNNVANSLLLAAALLGFDLRVATPKGYEPDPEIVEKIAKETGASIEVTHDPKEAVKGADVVYTD 224 (304)
T ss_pred CcCCcEEEEEeCCCccHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEec
Confidence 478999999997 7899999999999999999998853111 0136788999999999876
No 344
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=92.65 E-value=0.12 Score=45.09 Aligned_cols=55 Identities=15% Similarity=0.074 Sum_probs=39.1
Q ss_pred CEEEEEcCChHHHHHHHHHc-cCCC-EEEEEcCCCCCC--------------CcccChhhhcccCcEEEEe
Q 027226 154 KTVFILGFGNIGVELAKRLR-PFGV-KIIATKRSWASH--------------SQVSCQSSGWHCKQVISIF 208 (226)
Q Consensus 154 ktvgIvG~G~IG~~vA~~l~-afG~-~V~~~~r~~~~~--------------~~~~~l~ell~~sD~v~l~ 208 (226)
+++||+|.|..|+.-++.+. .++. +|..|+|++... ....+.++.++.+|+++..
T Consensus 129 ~~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~v~~~~~~~~av~~aDii~ta 199 (313)
T PF02423_consen 129 RTLGVIGAGVQARWHLRALAAVRPIKEVRVYSRSPERAEAFAARLRDLGVPVVAVDSAEEAVRGADIIVTA 199 (313)
T ss_dssp -EEEEE--SHHHHHHHHHHHHHS--SEEEEE-SSHHHHHHHHHHHHCCCTCEEEESSHHHHHTTSSEEEE-
T ss_pred ceEEEECCCHHHHHHHHHHHHhCCceEEEEEccChhHHHHHHHhhccccccceeccchhhhcccCCEEEEc
Confidence 69999999999999988876 4666 699999985322 1356788999999999988
No 345
>PRK14804 ornithine carbamoyltransferase; Provisional
Probab=92.64 E-value=1.4 Score=38.45 Aligned_cols=59 Identities=12% Similarity=0.036 Sum_probs=47.7
Q ss_pred ccCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCCCCC------------Cc----ccChhhhcccCcEEEEe
Q 027226 150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWASH------------SQ----VSCQSSGWHCKQVISIF 208 (226)
Q Consensus 150 ~l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~~~~------------~~----~~~l~ell~~sD~v~l~ 208 (226)
.+.|+||+++|- +++....+..+..|||+|....|..-.. .+ ..++++.++.+|+|...
T Consensus 150 ~l~g~~va~vGd~~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~~~g~i~~~~d~~~av~~aDvvy~d 225 (311)
T PRK14804 150 PLNQKQLTYIGVHNNVVNSLIGITAALGIHLTLVTPIAAKENIHAQTVERAKKKGTLSWEMNLHKAVSHADYVYTD 225 (311)
T ss_pred CCCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEECCCCccHHHHHHHHHHHHhcCCeEEEeCHHHHhCCCCEEEee
Confidence 478999999997 6899999999999999999999854211 01 35678999999999884
No 346
>PRK06125 short chain dehydrogenase; Provisional
Probab=92.64 E-value=0.2 Score=41.77 Aligned_cols=37 Identities=30% Similarity=0.379 Sum_probs=33.3
Q ss_pred ccCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCC
Q 027226 150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW 186 (226)
Q Consensus 150 ~l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~ 186 (226)
.+.||++.|.|- |.||+++|+.|...|++|+..+|+.
T Consensus 4 ~~~~k~vlItG~~~giG~~ia~~l~~~G~~V~~~~r~~ 41 (259)
T PRK06125 4 HLAGKRVLITGASKGIGAAAAEAFAAEGCHLHLVARDA 41 (259)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCH
Confidence 467899999998 6899999999999999999999864
No 347
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=92.63 E-value=0.33 Score=35.98 Aligned_cols=55 Identities=11% Similarity=0.156 Sum_probs=41.9
Q ss_pred CEEEEEc----CChHHHHHHHHHccCCCEEEEEcCCCCCC---CcccChhhhcccCcEEEEe
Q 027226 154 KTVFILG----FGNIGVELAKRLRPFGVKIIATKRSWASH---SQVSCQSSGWHCKQVISIF 208 (226)
Q Consensus 154 ktvgIvG----~G~IG~~vA~~l~afG~~V~~~~r~~~~~---~~~~~l~ell~~sD~v~l~ 208 (226)
|++.|+| -|..|..+.+.++..|.+|+.+++...+. ..+.+|+|.=...|++++.
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vnp~~~~i~G~~~y~sl~e~p~~iDlavv~ 62 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKAAGYEVYPVNPKGGEILGIKCYPSLAEIPEPIDLAVVC 62 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHHTT-EEEEESTTCSEETTEE-BSSGGGCSST-SEEEE-
T ss_pred CEEEEEcccCCCCChHHHHHHHHHhCCCEEEEECCCceEECcEEeeccccCCCCCCCEEEEE
Confidence 6899999 78999999999999999999999987553 2366777733788888877
No 348
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=92.62 E-value=0.25 Score=43.96 Aligned_cols=35 Identities=31% Similarity=0.345 Sum_probs=31.7
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCC
Q 027226 152 LGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW 186 (226)
Q Consensus 152 ~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~ 186 (226)
.+++|.|.|- |-||+.+++.|..-|.+|++++|..
T Consensus 20 ~~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~~ 55 (370)
T PLN02695 20 EKLRICITGAGGFIASHIARRLKAEGHYIIASDWKK 55 (370)
T ss_pred CCCEEEEECCccHHHHHHHHHHHhCCCEEEEEEecc
Confidence 5689999997 9999999999999999999999854
No 349
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=92.61 E-value=0.17 Score=44.34 Aligned_cols=35 Identities=29% Similarity=0.387 Sum_probs=32.4
Q ss_pred cCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCC
Q 027226 151 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRS 185 (226)
Q Consensus 151 l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~ 185 (226)
..|++|.|+|.|.||...+..++..|++|++++++
T Consensus 171 ~~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~ 205 (355)
T cd08230 171 WNPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRR 205 (355)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Confidence 35889999999999999999999999999999884
No 350
>PRK07062 short chain dehydrogenase; Provisional
Probab=92.55 E-value=0.16 Score=42.39 Aligned_cols=39 Identities=21% Similarity=0.248 Sum_probs=34.5
Q ss_pred CccCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCCC
Q 027226 149 ETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA 187 (226)
Q Consensus 149 ~~l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~~ 187 (226)
..+.||++.|.|- |.||+++|+.+..-|++|+..+|+..
T Consensus 4 ~~l~~k~~lItGas~giG~~ia~~l~~~G~~V~~~~r~~~ 43 (265)
T PRK07062 4 IQLEGRVAVVTGGSSGIGLATVELLLEAGASVAICGRDEE 43 (265)
T ss_pred cccCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHH
Confidence 3578999999997 57999999999999999999998753
No 351
>PRK05867 short chain dehydrogenase; Provisional
Probab=92.54 E-value=0.21 Score=41.40 Aligned_cols=37 Identities=27% Similarity=0.360 Sum_probs=33.7
Q ss_pred ccCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCC
Q 027226 150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW 186 (226)
Q Consensus 150 ~l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~ 186 (226)
.+.||++.|.|- |.||+++|+.|..-|.+|+..+|+.
T Consensus 6 ~~~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~ 43 (253)
T PRK05867 6 DLHGKRALITGASTGIGKRVALAYVEAGAQVAIAARHL 43 (253)
T ss_pred cCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCH
Confidence 478999999997 8999999999999999999998864
No 352
>PRK08177 short chain dehydrogenase; Provisional
Probab=92.52 E-value=0.21 Score=40.64 Aligned_cols=35 Identities=31% Similarity=0.443 Sum_probs=31.1
Q ss_pred CEEEEEc-CChHHHHHHHHHccCCCEEEEEcCCCCC
Q 027226 154 KTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWAS 188 (226)
Q Consensus 154 ktvgIvG-~G~IG~~vA~~l~afG~~V~~~~r~~~~ 188 (226)
+++.|.| .|.||+++|+.|...|++|+.++|++..
T Consensus 2 k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~ 37 (225)
T PRK08177 2 RTALIIGASRGLGLGLVDRLLERGWQVTATVRGPQQ 37 (225)
T ss_pred CEEEEeCCCchHHHHHHHHHHhCCCEEEEEeCCCcc
Confidence 6788888 8999999999999999999999997643
No 353
>PRK08374 homoserine dehydrogenase; Provisional
Probab=92.52 E-value=0.18 Score=44.41 Aligned_cols=31 Identities=35% Similarity=0.712 Sum_probs=25.5
Q ss_pred CEEEEEcCChHHHHHHHHHcc--------CC--CEEEEEcC
Q 027226 154 KTVFILGFGNIGVELAKRLRP--------FG--VKIIATKR 184 (226)
Q Consensus 154 ktvgIvG~G~IG~~vA~~l~a--------fG--~~V~~~~r 184 (226)
-+|+|+|||++|+.+++.+.. +| .+|.++..
T Consensus 3 i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~d 43 (336)
T PRK08374 3 VKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVELKVVSITD 43 (336)
T ss_pred eEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEe
Confidence 489999999999999998865 56 77777643
No 354
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=92.50 E-value=0.34 Score=42.28 Aligned_cols=35 Identities=17% Similarity=0.287 Sum_probs=28.7
Q ss_pred CCEEEEEcCChHHHHHHHHHccCC--CEEEEEcCCCC
Q 027226 153 GKTVFILGFGNIGVELAKRLRPFG--VKIIATKRSWA 187 (226)
Q Consensus 153 gktvgIvG~G~IG~~vA~~l~afG--~~V~~~~r~~~ 187 (226)
..+|+|||.|.||..+|-.+...| -++..+|...+
T Consensus 3 ~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~ 39 (312)
T cd05293 3 RNKVTVVGVGQVGMACAISILAKGLADELVLVDVVED 39 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcc
Confidence 359999999999999999886444 47999998653
No 355
>COG5322 Predicted dehydrogenase [General function prediction only]
Probab=92.49 E-value=0.48 Score=40.47 Aligned_cols=62 Identities=19% Similarity=0.169 Sum_probs=46.0
Q ss_pred CCCccCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCCCCC--------------CcccChhhhcccCcEEEEe
Q 027226 147 TGETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWASH--------------SQVSCQSSGWHCKQVISIF 208 (226)
Q Consensus 147 ~~~~l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~~~~--------------~~~~~l~ell~~sD~v~l~ 208 (226)
.+.+|+..||+|+|+ |.||..+||.+.+-+.+..-.-|..... -..-++|..+...|+++-.
T Consensus 161 lGidlsqatvaivGa~G~Ia~~Iar~la~~~~~~~ll~r~aea~~rq~l~~l~e~~~~~~i~s~d~~~~~e~i~v~v 237 (351)
T COG5322 161 LGIDLSQATVAIVGATGDIASAIARWLAPKVGVKELLLRDAEARNRQRLTLLQEELGRGKIMSLDYALPQEDILVWV 237 (351)
T ss_pred hCcCHHHCeEEEecCCchHHHHHHHHhccccCEEEEecccHHhhhhhhhhhcccccCCCeeeeccccccccceEEEE
Confidence 578999999999996 9999999999999999877666432111 1234567666666666655
No 356
>KOG1207 consensus Diacetyl reductase/L-xylulose reductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=92.48 E-value=0.14 Score=41.00 Aligned_cols=38 Identities=34% Similarity=0.520 Sum_probs=34.6
Q ss_pred CccCCCEEEEEcCC-hHHHHHHHHHccCCCEEEEEcCCC
Q 027226 149 ETLLGKTVFILGFG-NIGVELAKRLRPFGVKIIATKRSW 186 (226)
Q Consensus 149 ~~l~gktvgIvG~G-~IG~~vA~~l~afG~~V~~~~r~~ 186 (226)
..|.|+.|.+-|.| .||+++..-|..-|++|+++.|.+
T Consensus 3 t~laG~~vlvTgagaGIG~~~v~~La~aGA~ViAvaR~~ 41 (245)
T KOG1207|consen 3 TSLAGVIVLVTGAGAGIGKEIVLSLAKAGAQVIAVARNE 41 (245)
T ss_pred ccccceEEEeecccccccHHHHHHHHhcCCEEEEEecCH
Confidence 46889999999998 599999999999999999999974
No 357
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=92.47 E-value=0.34 Score=40.28 Aligned_cols=40 Identities=15% Similarity=0.132 Sum_probs=35.9
Q ss_pred CccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCC
Q 027226 149 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS 188 (226)
Q Consensus 149 ~~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~ 188 (226)
-.++|++|.|||-|.++.+=++.|..+|++|+.+++...+
T Consensus 21 l~~~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i~~ 60 (223)
T PRK05562 21 LLSNKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKFSK 60 (223)
T ss_pred EECCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCCCH
Confidence 4677999999999999999999999999999999997654
No 358
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=92.47 E-value=0.29 Score=39.05 Aligned_cols=39 Identities=33% Similarity=0.416 Sum_probs=33.0
Q ss_pred CccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCC
Q 027226 149 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA 187 (226)
Q Consensus 149 ~~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~ 187 (226)
..+.||+|.|||-|..|-.+|..|...|-+|..+.|++.
T Consensus 163 ~~~~~k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~R~~~ 201 (203)
T PF13738_consen 163 EDFKGKRVVVVGGGNSAVDIAYALAKAGKSVTLVTRSPI 201 (203)
T ss_dssp GGCTTSEEEEE--SHHHHHHHHHHTTTCSEEEEEESS--
T ss_pred hhcCCCcEEEEcChHHHHHHHHHHHhhCCEEEEEecCCC
Confidence 578899999999999999999999999999999999753
No 359
>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional
Probab=92.46 E-value=0.22 Score=41.73 Aligned_cols=37 Identities=27% Similarity=0.347 Sum_probs=32.8
Q ss_pred CccCCCEEEEEcCC---hHHHHHHHHHccCCCEEEEEcCC
Q 027226 149 ETLLGKTVFILGFG---NIGVELAKRLRPFGVKIIATKRS 185 (226)
Q Consensus 149 ~~l~gktvgIvG~G---~IG~~vA~~l~afG~~V~~~~r~ 185 (226)
..+.||++.|.|-+ .||+++|++|..-|++|+..+|+
T Consensus 4 ~~~~~k~~lITGas~~~GIG~a~a~~la~~G~~v~~~~r~ 43 (260)
T PRK06603 4 GLLQGKKGLITGIANNMSISWAIAQLAKKHGAELWFTYQS 43 (260)
T ss_pred cccCCcEEEEECCCCCcchHHHHHHHHHHcCCEEEEEeCc
Confidence 45789999999997 49999999999999999988775
No 360
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=92.44 E-value=0.23 Score=48.87 Aligned_cols=34 Identities=24% Similarity=0.278 Sum_probs=30.9
Q ss_pred CEEEEEcCChHHHHH-HHHHccCCCEEEEEcCCCC
Q 027226 154 KTVFILGFGNIGVEL-AKRLRPFGVKIIATKRSWA 187 (226)
Q Consensus 154 ktvgIvG~G~IG~~v-A~~l~afG~~V~~~~r~~~ 187 (226)
+++.|+|+|.+|... |+.|+..|.+|.++|....
T Consensus 5 ~~i~viG~G~sG~salA~~L~~~G~~V~~sD~~~~ 39 (809)
T PRK14573 5 LFYHFIGIGGIGMSALAHILLDRGYSVSGSDLSEG 39 (809)
T ss_pred ceEEEEEecHHhHHHHHHHHHHCCCeEEEECCCCC
Confidence 469999999999998 9999999999999997643
No 361
>PRK07890 short chain dehydrogenase; Provisional
Probab=92.43 E-value=0.19 Score=41.66 Aligned_cols=38 Identities=29% Similarity=0.414 Sum_probs=33.7
Q ss_pred ccCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCCC
Q 027226 150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA 187 (226)
Q Consensus 150 ~l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~~ 187 (226)
.+.+|++.|.|- |.||+++|+.|..-|++|+..+|+..
T Consensus 2 ~l~~k~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~~~ 40 (258)
T PRK07890 2 LLKGKVVVVSGVGPGLGRTLAVRAARAGADVVLAARTAE 40 (258)
T ss_pred ccCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 367899999985 89999999999999999999998653
No 362
>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=92.42 E-value=0.19 Score=41.70 Aligned_cols=36 Identities=31% Similarity=0.483 Sum_probs=32.5
Q ss_pred ccCCCEEEEEcCC---hHHHHHHHHHccCCCEEEEEcCC
Q 027226 150 TLLGKTVFILGFG---NIGVELAKRLRPFGVKIIATKRS 185 (226)
Q Consensus 150 ~l~gktvgIvG~G---~IG~~vA~~l~afG~~V~~~~r~ 185 (226)
.+.+|++.|.|-+ .||+++|+.|...|++|+..+|+
T Consensus 2 ~l~~k~vlItGas~~~giG~~la~~l~~~G~~vi~~~r~ 40 (256)
T PRK12748 2 PLMKKIALVTGASRLNGIGAAVCRRLAAKGIDIFFTYWS 40 (256)
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHHcCCcEEEEcCC
Confidence 4678999999974 69999999999999999999887
No 363
>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional
Probab=92.41 E-value=0.2 Score=42.56 Aligned_cols=35 Identities=26% Similarity=0.311 Sum_probs=31.8
Q ss_pred cCCCEEEEEcCC---hHHHHHHHHHccCCCEEEEEcCC
Q 027226 151 LLGKTVFILGFG---NIGVELAKRLRPFGVKIIATKRS 185 (226)
Q Consensus 151 l~gktvgIvG~G---~IG~~vA~~l~afG~~V~~~~r~ 185 (226)
+.||++.|.|-+ .||+++|++|..-|++|+..+|+
T Consensus 3 l~~k~~lItGas~~~GIG~aiA~~la~~G~~Vil~~r~ 40 (274)
T PRK08415 3 MKGKKGLIVGVANNKSIAYGIAKACFEQGAELAFTYLN 40 (274)
T ss_pred cCCcEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEecC
Confidence 578999999984 79999999999999999988876
No 364
>PRK09072 short chain dehydrogenase; Provisional
Probab=92.38 E-value=0.23 Score=41.49 Aligned_cols=36 Identities=33% Similarity=0.509 Sum_probs=32.8
Q ss_pred cCCCEEEEEc-CChHHHHHHHHHccCCCEEEEEcCCC
Q 027226 151 LLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW 186 (226)
Q Consensus 151 l~gktvgIvG-~G~IG~~vA~~l~afG~~V~~~~r~~ 186 (226)
+.++++.|.| -|.||+++++.+...|.+|++.+|+.
T Consensus 3 ~~~~~vlItG~s~~iG~~ia~~l~~~G~~V~~~~r~~ 39 (263)
T PRK09072 3 LKDKRVLLTGASGGIGQALAEALAAAGARLLLVGRNA 39 (263)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEECCH
Confidence 5789999998 59999999999999999999999864
No 365
>PRK07774 short chain dehydrogenase; Provisional
Probab=92.37 E-value=0.23 Score=40.90 Aligned_cols=37 Identities=22% Similarity=0.318 Sum_probs=33.6
Q ss_pred ccCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCC
Q 027226 150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW 186 (226)
Q Consensus 150 ~l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~ 186 (226)
.+.+|++.|.|- |.||+++++.|...|++|+..+|+.
T Consensus 3 ~~~~k~vlItGasg~iG~~la~~l~~~g~~vi~~~r~~ 40 (250)
T PRK07774 3 RFDDKVAIVTGAAGGIGQAYAEALAREGASVVVADINA 40 (250)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence 467899999997 9999999999999999999999874
No 366
>PRK07326 short chain dehydrogenase; Provisional
Probab=92.37 E-value=0.2 Score=40.93 Aligned_cols=36 Identities=36% Similarity=0.433 Sum_probs=32.3
Q ss_pred cCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCC
Q 027226 151 LLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW 186 (226)
Q Consensus 151 l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~ 186 (226)
+.++++.|.|- |.||+.+++.|...|.+|++.+|++
T Consensus 4 ~~~~~ilItGatg~iG~~la~~l~~~g~~V~~~~r~~ 40 (237)
T PRK07326 4 LKGKVALITGGSKGIGFAIAEALLAEGYKVAITARDQ 40 (237)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEeeCCH
Confidence 46799999984 9999999999998899999999865
No 367
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=92.36 E-value=0.42 Score=41.97 Aligned_cols=55 Identities=15% Similarity=0.092 Sum_probs=40.6
Q ss_pred CEEEEEcC-ChHHHHHHHHHccCC-------CEEEEEcCCCCCC---------Cc-----------ccChhhhcccCcEE
Q 027226 154 KTVFILGF-GNIGVELAKRLRPFG-------VKIIATKRSWASH---------SQ-----------VSCQSSGWHCKQVI 205 (226)
Q Consensus 154 ktvgIvG~-G~IG~~vA~~l~afG-------~~V~~~~r~~~~~---------~~-----------~~~l~ell~~sD~v 205 (226)
.+|+|+|. |.||+.++..|...+ .+|..+|+..... .+ ..++.+.++.+|+|
T Consensus 3 ~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~~~~~~~~~~~~~l~~aDiV 82 (325)
T cd01336 3 IRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLKSVVATTDPEEAFKDVDVA 82 (325)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehhhccccccCCceecCCHHHHhCCCCEE
Confidence 36999999 999999999997633 4899999854321 00 23455778889988
Q ss_pred EEe
Q 027226 206 SIF 208 (226)
Q Consensus 206 ~l~ 208 (226)
+..
T Consensus 83 I~t 85 (325)
T cd01336 83 ILV 85 (325)
T ss_pred EEe
Confidence 776
No 368
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=92.36 E-value=0.22 Score=41.54 Aligned_cols=36 Identities=22% Similarity=0.402 Sum_probs=32.5
Q ss_pred cCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCC
Q 027226 151 LLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW 186 (226)
Q Consensus 151 l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~ 186 (226)
+.+|++.|.|- |.||+++|+.|..-|++|+..+|+.
T Consensus 3 ~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~ 39 (262)
T TIGR03325 3 LKGEVVLVTGGASGLGRAIVDRFVAEGARVAVLDKSA 39 (262)
T ss_pred cCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence 67899999986 6899999999999999999998864
No 369
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=92.34 E-value=0.17 Score=44.20 Aligned_cols=36 Identities=31% Similarity=0.550 Sum_probs=32.3
Q ss_pred CCCEEEEEcCChHHHHHHHHHccCCC-EEEEEcCCCC
Q 027226 152 LGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWA 187 (226)
Q Consensus 152 ~gktvgIvG~G~IG~~vA~~l~afG~-~V~~~~r~~~ 187 (226)
.|++|.|.|.|.+|...++.++..|+ +|++.+++..
T Consensus 169 ~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~ 205 (343)
T PRK09880 169 QGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPR 205 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHH
Confidence 58999999999999999999999999 6888887643
No 370
>PRK12861 malic enzyme; Reviewed
Probab=92.31 E-value=1 Score=43.97 Aligned_cols=97 Identities=15% Similarity=0.105 Sum_probs=72.6
Q ss_pred CcEEEecCCCCCCCchhHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCCCCCccCCCEEEEEcCChHHHHHHHHHccCCC-
Q 027226 99 GIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV- 177 (226)
Q Consensus 99 gi~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~gktvgIvG~G~IG~~vA~~l~afG~- 177 (226)
.|++.|- +. ..+|=-+++.+++.+|- .+..+.+.+|.+.|.|.-|..+|+.+...|.
T Consensus 157 ~ipvf~D-D~-----qGTa~v~lA~llnal~~----------------~gk~l~d~~iv~~GAGaAg~~ia~~l~~~G~~ 214 (764)
T PRK12861 157 KIPVFHD-DQ-----HGTAITVSAAFINGLKV----------------VGKSIKEVKVVTSGAGAAALACLDLLVDLGLP 214 (764)
T ss_pred CCCeecc-cc-----chHHHHHHHHHHHHHHH----------------hCCChhHcEEEEECHhHHHHHHHHHHHHcCCC
Confidence 6888775 33 44666777777777763 3678999999999999999999999999999
Q ss_pred --EEEEEcCCC-----CC---C---------CcccChhhhcccCcEEEEeccCCccccc
Q 027226 178 --KIIATKRSW-----AS---H---------SQVSCQSSGWHCKQVISIFNEKGFSSGE 217 (226)
Q Consensus 178 --~V~~~~r~~-----~~---~---------~~~~~l~ell~~sD~v~l~~~~d~i~~~ 217 (226)
+++.+|+.. ++ . ....+|.|+++.+|++.=+...+.+..+
T Consensus 215 ~~~i~~~D~~Gli~~~r~~~l~~~k~~~a~~~~~~~L~eai~~advliG~S~~g~ft~e 273 (764)
T PRK12861 215 VENIWVTDIEGVVYRGRTTLMDPDKERFAQETDARTLAEVIGGADVFLGLSAGGVLKAE 273 (764)
T ss_pred hhhEEEEcCCCeeeCCCcccCCHHHHHHHhhcCCCCHHHHHhcCCEEEEcCCCCCCCHH
Confidence 799999643 11 1 2346799999999888776655555443
No 371
>TIGR00658 orni_carb_tr ornithine carbamoyltransferase. Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.
Probab=92.30 E-value=1.7 Score=37.82 Aligned_cols=59 Identities=15% Similarity=0.079 Sum_probs=47.1
Q ss_pred ccCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCCCCC-------------------CcccChhhhcccCcEEEEe
Q 027226 150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWASH-------------------SQVSCQSSGWHCKQVISIF 208 (226)
Q Consensus 150 ~l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~~~~-------------------~~~~~l~ell~~sD~v~l~ 208 (226)
.+.|.+|+++|= +++-+..+..+..||++|....|..-.. ....++++.++.+|+|...
T Consensus 145 ~l~g~~v~~vGd~~~v~~Sl~~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvy~~ 223 (304)
T TIGR00658 145 KLKGVKVVYVGDGNNVCNSLMLAGAKLGMDVVVATPEGYEPDADIVKKAQEIAKENGGSVELTHDPVEAVKGADVIYTD 223 (304)
T ss_pred CCCCcEEEEEeCCCchHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEc
Confidence 388999999997 6888888999999999999998743211 0135778999999999885
No 372
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=92.28 E-value=0.24 Score=43.43 Aligned_cols=37 Identities=24% Similarity=0.284 Sum_probs=32.8
Q ss_pred cCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCCC
Q 027226 151 LLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA 187 (226)
Q Consensus 151 l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~~ 187 (226)
++|++|.|.|- |-||+++++.|..-|.+|++.+|+..
T Consensus 2 ~~~k~ilItGatG~IG~~l~~~L~~~G~~V~~~~r~~~ 39 (349)
T TIGR02622 2 WQGKKVLVTGHTGFKGSWLSLWLLELGAEVYGYSLDPP 39 (349)
T ss_pred cCCCEEEEECCCChhHHHHHHHHHHCCCEEEEEeCCCc
Confidence 46899999994 99999999999999999999988654
No 373
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=92.28 E-value=0.17 Score=41.71 Aligned_cols=37 Identities=30% Similarity=0.434 Sum_probs=33.1
Q ss_pred cCCCEEEEEc-CChHHHHHHHHHccCCCEEEEEcCCCC
Q 027226 151 LLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWA 187 (226)
Q Consensus 151 l~gktvgIvG-~G~IG~~vA~~l~afG~~V~~~~r~~~ 187 (226)
++++++.|.| .|.||+++|+.|...|.+|+.++|+..
T Consensus 2 ~~~~~vlItG~sg~iG~~la~~l~~~g~~v~~~~r~~~ 39 (258)
T PRK12429 2 LKGKVALVTGAASGIGLEIALALAKEGAKVVIADLNDE 39 (258)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHH
Confidence 4679999999 699999999999999999999998754
No 374
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.26 E-value=0.19 Score=45.82 Aligned_cols=34 Identities=21% Similarity=0.493 Sum_probs=31.2
Q ss_pred EEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCC
Q 027226 155 TVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS 188 (226)
Q Consensus 155 tvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~ 188 (226)
+|.|+|.|..|..+|+.|...|.+|.++|+...+
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~~ 35 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDSP 35 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCch
Confidence 6899999999999999999999999999987554
No 375
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=92.25 E-value=0.31 Score=43.55 Aligned_cols=55 Identities=16% Similarity=0.119 Sum_probs=42.6
Q ss_pred CEEEEEcCChHHHHHHHHHcc-------CCCEEEEEcCCCCC----------------C-----------CcccChhhhc
Q 027226 154 KTVFILGFGNIGVELAKRLRP-------FGVKIIATKRSWAS----------------H-----------SQVSCQSSGW 199 (226)
Q Consensus 154 ktvgIvG~G~IG~~vA~~l~a-------fG~~V~~~~r~~~~----------------~-----------~~~~~l~ell 199 (226)
.+|+|||.|+-|.++|..+.. ||-+|..|.|.... . .-..++++++
T Consensus 12 ~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~tsdl~eav 91 (365)
T PTZ00345 12 LKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAVSDLKEAV 91 (365)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCcCCCceEEecCHHHHH
Confidence 589999999999999999974 45799999887631 0 0134567888
Q ss_pred ccCcEEEEe
Q 027226 200 HCKQVISIF 208 (226)
Q Consensus 200 ~~sD~v~l~ 208 (226)
..+|++.+.
T Consensus 92 ~~aDiIvlA 100 (365)
T PTZ00345 92 EDADLLIFV 100 (365)
T ss_pred hcCCEEEEE
Confidence 889988876
No 376
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=92.25 E-value=0.2 Score=46.00 Aligned_cols=36 Identities=31% Similarity=0.461 Sum_probs=32.7
Q ss_pred CCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCC
Q 027226 153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS 188 (226)
Q Consensus 153 gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~ 188 (226)
-+++.|||-|-||-++|..++.||.+|..+.+...-
T Consensus 173 P~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~i 208 (454)
T COG1249 173 PKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRI 208 (454)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCC
Confidence 378999999999999999999999999999887544
No 377
>PRK08289 glyceraldehyde-3-phosphate dehydrogenase; Reviewed
Probab=92.23 E-value=0.21 Score=45.77 Aligned_cols=33 Identities=33% Similarity=0.508 Sum_probs=27.8
Q ss_pred cCCCEEEEEcCChHHHHHHHHHcc-----CCCEEEEEc
Q 027226 151 LLGKTVFILGFGNIGVELAKRLRP-----FGVKIIATK 183 (226)
Q Consensus 151 l~gktvgIvG~G~IG~~vA~~l~a-----fG~~V~~~~ 183 (226)
...++|||-|||+||+.++|.+-. -+++|.+..
T Consensus 125 ~~~~~V~InGFGRIGR~v~R~~~~~~~~~~~l~lvAIn 162 (477)
T PRK08289 125 IEPRDVVLYGFGRIGRLLARLLIEKTGGGNGLRLRAIV 162 (477)
T ss_pred CCCceEEEECCCHHHHHHHHHHHhccCCCCCeEEEEEe
Confidence 557899999999999999998742 578888884
No 378
>PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=92.18 E-value=0.23 Score=41.41 Aligned_cols=35 Identities=29% Similarity=0.400 Sum_probs=31.4
Q ss_pred ccCCCEEEEEcCC---hHHHHHHHHHccCCCEEEEEcC
Q 027226 150 TLLGKTVFILGFG---NIGVELAKRLRPFGVKIIATKR 184 (226)
Q Consensus 150 ~l~gktvgIvG~G---~IG~~vA~~l~afG~~V~~~~r 184 (226)
.+.||++.|.|-+ .||+++|+.+...|++|+..++
T Consensus 3 ~l~~k~vlVtGas~~~giG~~~a~~l~~~G~~vi~~~~ 40 (256)
T PRK12859 3 QLKNKVAVVTGVSRLDGIGAAICKELAEAGADIFFTYW 40 (256)
T ss_pred CcCCcEEEEECCCCCCChHHHHHHHHHHCCCeEEEEec
Confidence 5889999999985 7999999999999999998753
No 379
>PRK06500 short chain dehydrogenase; Provisional
Probab=92.18 E-value=0.25 Score=40.62 Aligned_cols=37 Identities=35% Similarity=0.465 Sum_probs=33.0
Q ss_pred ccCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCC
Q 027226 150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW 186 (226)
Q Consensus 150 ~l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~ 186 (226)
.+.+|++.|.|- |.||+++++.|...|++|+..+|+.
T Consensus 3 ~~~~k~vlItGasg~iG~~la~~l~~~g~~v~~~~r~~ 40 (249)
T PRK06500 3 RLQGKTALITGGTSGIGLETARQFLAEGARVAITGRDP 40 (249)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCCH
Confidence 367899999996 9999999999999999999998863
No 380
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=92.17 E-value=0.14 Score=43.93 Aligned_cols=54 Identities=26% Similarity=0.316 Sum_probs=39.8
Q ss_pred EEEEEc-CChHHHHHHHHHccCCCEEEEEcCCCCCCCcccChhhhccc--CcEEEEe
Q 027226 155 TVFILG-FGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSGWHC--KQVISIF 208 (226)
Q Consensus 155 tvgIvG-~G~IG~~vA~~l~afG~~V~~~~r~~~~~~~~~~l~ell~~--sD~v~l~ 208 (226)
+|.|+| -|-||+++.+.|+..|.+|++++|..-.-.+...+.+++.. .|+|+..
T Consensus 2 riLI~GasG~lG~~l~~~l~~~~~~v~~~~r~~~dl~d~~~~~~~~~~~~pd~Vin~ 58 (286)
T PF04321_consen 2 RILITGASGFLGSALARALKERGYEVIATSRSDLDLTDPEAVAKLLEAFKPDVVINC 58 (286)
T ss_dssp EEEEETTTSHHHHHHHHHHTTTSEEEEEESTTCS-TTSHHHHHHHHHHH--SEEEE-
T ss_pred EEEEECCCCHHHHHHHHHHhhCCCEEEEeCchhcCCCCHHHHHHHHHHhCCCeEecc
Confidence 689999 69999999999999999999998763332344556677665 4655444
No 381
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=92.16 E-value=0.34 Score=44.80 Aligned_cols=60 Identities=20% Similarity=0.187 Sum_probs=48.2
Q ss_pred CccCCCEEEEEcC----------ChHHHHHHHHHccCCCEEEEEcCCCCCC-----Cc----------------------
Q 027226 149 ETLLGKTVFILGF----------GNIGVELAKRLRPFGVKIIATKRSWASH-----SQ---------------------- 191 (226)
Q Consensus 149 ~~l~gktvgIvG~----------G~IG~~vA~~l~afG~~V~~~~r~~~~~-----~~---------------------- 191 (226)
..+.|++|+|+|+ .+-...+++.|...|++|.+|||..... .+
T Consensus 320 ~~~~~~~VavlGlafK~~tdD~R~Spa~~li~~L~~~G~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (473)
T PLN02353 320 NTVSGKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEEQIQRDLSMNKFDWDHPRHLQPMSPTAVKQ 399 (473)
T ss_pred cccCCCEEEEEeeeecCCCCccccChHHHHHHHHHhCCCEEEEECCCCChHHHHHHhhcccccccccccccccccccccc
Confidence 3689999999998 6788999999999999999999974332 10
Q ss_pred ---ccChhhhcccCcEEEEe
Q 027226 192 ---VSCQSSGWHCKQVISIF 208 (226)
Q Consensus 192 ---~~~l~ell~~sD~v~l~ 208 (226)
..++++.++.+|+++++
T Consensus 400 ~~~~~~~~~a~~~aD~vvi~ 419 (473)
T PLN02353 400 VSVVWDAYEATKGAHGICIL 419 (473)
T ss_pred eeeeCCHHHHhcCCCEEEEC
Confidence 11335788999999999
No 382
>PLN02602 lactate dehydrogenase
Probab=92.14 E-value=0.4 Score=42.55 Aligned_cols=34 Identities=18% Similarity=0.361 Sum_probs=28.8
Q ss_pred CEEEEEcCChHHHHHHHHHccCCC--EEEEEcCCCC
Q 027226 154 KTVFILGFGNIGVELAKRLRPFGV--KIIATKRSWA 187 (226)
Q Consensus 154 ktvgIvG~G~IG~~vA~~l~afG~--~V~~~~r~~~ 187 (226)
++|+|||.|+||..+|-.+...|. ++..+|....
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~ 73 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPD 73 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCc
Confidence 699999999999999998875554 7999998653
No 383
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=92.14 E-value=0.27 Score=42.13 Aligned_cols=55 Identities=13% Similarity=0.131 Sum_probs=41.0
Q ss_pred CEEEEEc-CChHHHHHHHHHccCCCEEEEEcCCCCCC---------------CcccChhhhcccCcEEEEe
Q 027226 154 KTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWASH---------------SQVSCQSSGWHCKQVISIF 208 (226)
Q Consensus 154 ktvgIvG-~G~IG~~vA~~l~afG~~V~~~~r~~~~~---------------~~~~~l~ell~~sD~v~l~ 208 (226)
+++.|.| .|-||+.+++.|..-|.+|++++|+.... ....++.+++...|++...
T Consensus 1 ~~vlItG~~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~d~vi~~ 71 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLEQGEEVRVLVRPTSDRRNLEGLDVEIVEGDLRDPASLRKAVAGCRALFHV 71 (328)
T ss_pred CeEEEECCccchhHHHHHHHHHCCCEEEEEEecCccccccccCCceEEEeeCCCHHHHHHHHhCCCEEEEe
Confidence 3788998 59999999999999999999999975431 0123455667777876544
No 384
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=92.13 E-value=0.29 Score=40.30 Aligned_cols=40 Identities=23% Similarity=0.340 Sum_probs=37.0
Q ss_pred CCccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCC
Q 027226 148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA 187 (226)
Q Consensus 148 ~~~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~ 187 (226)
.-++.||+|.|+|-|.+|.+=++.+...|++|+.+++...
T Consensus 7 ~~~l~~k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~~~ 46 (210)
T COG1648 7 FLDLEGKKVLVVGGGSVALRKARLLLKAGADVTVVSPEFE 46 (210)
T ss_pred EEEcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEcCCcc
Confidence 3578999999999999999999999999999999999873
No 385
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=92.11 E-value=0.22 Score=42.75 Aligned_cols=35 Identities=37% Similarity=0.317 Sum_probs=31.2
Q ss_pred CCCEEEEEc-CChHHHHHHHHHccCCCEEEEEcCCC
Q 027226 152 LGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW 186 (226)
Q Consensus 152 ~gktvgIvG-~G~IG~~vA~~l~afG~~V~~~~r~~ 186 (226)
.|++|.|.| .|-||+.++++|..-|.+|++..|+.
T Consensus 3 ~~~~ilVtGatGfIG~~l~~~L~~~g~~V~~~~r~~ 38 (322)
T PLN02662 3 EGKVVCVTGASGYIASWLVKLLLQRGYTVKATVRDP 38 (322)
T ss_pred CCCEEEEECChHHHHHHHHHHHHHCCCEEEEEEcCC
Confidence 368999999 79999999999999999999888754
No 386
>PRK03515 ornithine carbamoyltransferase subunit I; Provisional
Probab=92.09 E-value=1.8 Score=38.23 Aligned_cols=59 Identities=14% Similarity=0.025 Sum_probs=47.0
Q ss_pred ccCCCEEEEEcCC--hHHHHHHHHHccCCCEEEEEcCCCCCC-------------------CcccChhhhcccCcEEEEe
Q 027226 150 TLLGKTVFILGFG--NIGVELAKRLRPFGVKIIATKRSWASH-------------------SQVSCQSSGWHCKQVISIF 208 (226)
Q Consensus 150 ~l~gktvgIvG~G--~IG~~vA~~l~afG~~V~~~~r~~~~~-------------------~~~~~l~ell~~sD~v~l~ 208 (226)
.+.|++|+++|-+ ++....+..+..||++|....|..-.. .-..++++.++.+|+|..-
T Consensus 153 ~l~g~~ia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~i~~~~d~~ea~~~aDvvytd 232 (336)
T PRK03515 153 AFNEMTLAYAGDARNNMGNSLLEAAALTGLDLRLVAPKACWPEAALVTECRALAQKNGGNITLTEDIAEGVKGADFIYTD 232 (336)
T ss_pred CcCCCEEEEeCCCcCcHHHHHHHHHHHcCCEEEEECCchhcCcHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEec
Confidence 5889999999976 689999999999999999998843211 0136678899999998875
No 387
>PRK08589 short chain dehydrogenase; Validated
Probab=92.07 E-value=0.25 Score=41.60 Aligned_cols=36 Identities=28% Similarity=0.272 Sum_probs=33.1
Q ss_pred ccCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCC
Q 027226 150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRS 185 (226)
Q Consensus 150 ~l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~ 185 (226)
.+.||++.|.|- |.||+++|+.|..-|++|+..+|+
T Consensus 3 ~l~~k~vlItGas~gIG~aia~~l~~~G~~vi~~~r~ 39 (272)
T PRK08589 3 RLENKVAVITGASTGIGQASAIALAQEGAYVLAVDIA 39 (272)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCc
Confidence 478999999997 789999999999999999999987
No 388
>PRK04284 ornithine carbamoyltransferase; Provisional
Probab=92.07 E-value=2.1 Score=37.68 Aligned_cols=59 Identities=14% Similarity=0.040 Sum_probs=47.2
Q ss_pred ccCCCEEEEEcCC--hHHHHHHHHHccCCCEEEEEcCCCCCC-------------------CcccChhhhcccCcEEEEe
Q 027226 150 TLLGKTVFILGFG--NIGVELAKRLRPFGVKIIATKRSWASH-------------------SQVSCQSSGWHCKQVISIF 208 (226)
Q Consensus 150 ~l~gktvgIvG~G--~IG~~vA~~l~afG~~V~~~~r~~~~~-------------------~~~~~l~ell~~sD~v~l~ 208 (226)
.+.|+||+++|=+ ++.+..+..+..||++|....|..-.. .-..++++.++.+|+|...
T Consensus 152 ~l~g~kia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~aDvvy~~ 231 (332)
T PRK04284 152 PYKDIKFTYVGDGRNNVANALMQGAAIMGMDFHLVCPKELNPDDELLNKCKEIAAETGGKITITDDIDEGVKGSDVIYTD 231 (332)
T ss_pred CcCCcEEEEecCCCcchHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEC
Confidence 4789999999975 888899999999999999998852110 0146678899999999885
No 389
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=92.07 E-value=0.21 Score=43.72 Aligned_cols=35 Identities=20% Similarity=0.425 Sum_probs=32.2
Q ss_pred CCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCC
Q 027226 152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW 186 (226)
Q Consensus 152 ~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~ 186 (226)
.|.+|.|.|.|.||...++.++++|.+|++.++++
T Consensus 166 ~g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~ 200 (349)
T TIGR03201 166 KGDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDP 200 (349)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCH
Confidence 47999999999999999999999999999988764
No 390
>PRK05866 short chain dehydrogenase; Provisional
Probab=92.05 E-value=0.27 Score=42.16 Aligned_cols=40 Identities=25% Similarity=0.381 Sum_probs=35.8
Q ss_pred CCCccCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCC
Q 027226 147 TGETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW 186 (226)
Q Consensus 147 ~~~~l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~ 186 (226)
....+.++++.|.|- |.||+++|+.|..-|++|+..+|+.
T Consensus 34 ~~~~~~~k~vlItGasggIG~~la~~La~~G~~Vi~~~R~~ 74 (293)
T PRK05866 34 QPVDLTGKRILLTGASSGIGEAAAEQFARRGATVVAVARRE 74 (293)
T ss_pred CCcCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 456788999999996 9999999999999999999999874
No 391
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=92.04 E-value=0.21 Score=43.46 Aligned_cols=36 Identities=22% Similarity=0.215 Sum_probs=32.7
Q ss_pred CCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCC
Q 027226 152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA 187 (226)
Q Consensus 152 ~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~ 187 (226)
.|.+|.|.|.|.+|...++.++.+|++|++.+++..
T Consensus 165 ~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~ 200 (329)
T TIGR02822 165 PGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAA 200 (329)
T ss_pred CCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChH
Confidence 489999999999999999999999999999888644
No 392
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=92.04 E-value=0.23 Score=43.88 Aligned_cols=57 Identities=14% Similarity=0.048 Sum_probs=41.9
Q ss_pred EEEEEcCChHHHHHHHHHccCC--------CEEEEEcCCCC----------------C----CC-------cccChhhhc
Q 027226 155 TVFILGFGNIGVELAKRLRPFG--------VKIIATKRSWA----------------S----HS-------QVSCQSSGW 199 (226)
Q Consensus 155 tvgIvG~G~IG~~vA~~l~afG--------~~V~~~~r~~~----------------~----~~-------~~~~l~ell 199 (226)
+|+|||.|+-|.++|..+..-| .+|..|.|... . .. -..++++++
T Consensus 1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~dl~eal 80 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVPDLVEAA 80 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEECCHHHHH
Confidence 4899999999999999997544 89999987220 0 00 124678889
Q ss_pred ccCcEEEEeccC
Q 027226 200 HCKQVISIFNEK 211 (226)
Q Consensus 200 ~~sD~v~l~~~~ 211 (226)
..+|++.+.-.+
T Consensus 81 ~~ADiIIlAVPs 92 (342)
T TIGR03376 81 KGADILVFVIPH 92 (342)
T ss_pred hcCCEEEEECCh
Confidence 999988877333
No 393
>PRK05876 short chain dehydrogenase; Provisional
Probab=92.04 E-value=0.27 Score=41.66 Aligned_cols=37 Identities=16% Similarity=0.299 Sum_probs=33.2
Q ss_pred ccCCCEEEEEc-CChHHHHHHHHHccCCCEEEEEcCCC
Q 027226 150 TLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW 186 (226)
Q Consensus 150 ~l~gktvgIvG-~G~IG~~vA~~l~afG~~V~~~~r~~ 186 (226)
.+.||++.|.| .|.||+++|+.|..-|++|+..+|+.
T Consensus 3 ~~~~k~vlVTGas~gIG~ala~~La~~G~~Vv~~~r~~ 40 (275)
T PRK05876 3 GFPGRGAVITGGASGIGLATGTEFARRGARVVLGDVDK 40 (275)
T ss_pred CcCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence 47899999997 78999999999999999999998763
No 394
>PRK12939 short chain dehydrogenase; Provisional
Probab=92.01 E-value=0.22 Score=40.94 Aligned_cols=38 Identities=24% Similarity=0.344 Sum_probs=33.5
Q ss_pred ccCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCCC
Q 027226 150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA 187 (226)
Q Consensus 150 ~l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~~ 187 (226)
.+.++++.|.|- |.||+.+|+.+..-|++|+..+|+..
T Consensus 4 ~~~~~~vlItGa~g~iG~~la~~l~~~G~~v~~~~r~~~ 42 (250)
T PRK12939 4 NLAGKRALVTGAARGLGAAFAEALAEAGATVAFNDGLAA 42 (250)
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 467899999985 99999999999999999999988643
No 395
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=92.01 E-value=0.27 Score=40.74 Aligned_cols=37 Identities=35% Similarity=0.533 Sum_probs=33.3
Q ss_pred ccCCCEEEEEc-CChHHHHHHHHHccCCCEEEEEcCCC
Q 027226 150 TLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW 186 (226)
Q Consensus 150 ~l~gktvgIvG-~G~IG~~vA~~l~afG~~V~~~~r~~ 186 (226)
.+.+|++.|.| .|.||+++|++|..-|++|+..+|+.
T Consensus 6 ~l~~k~~lItGas~giG~~ia~~L~~~G~~vvl~~r~~ 43 (254)
T PRK08085 6 SLAGKNILITGSAQGIGFLLATGLAEYGAEIIINDITA 43 (254)
T ss_pred cCCCCEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCH
Confidence 57899999998 57899999999999999999999874
No 396
>PRK12367 short chain dehydrogenase; Provisional
Probab=91.99 E-value=0.26 Score=41.17 Aligned_cols=39 Identities=36% Similarity=0.466 Sum_probs=34.4
Q ss_pred CCccCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCC
Q 027226 148 GETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW 186 (226)
Q Consensus 148 ~~~l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~ 186 (226)
...+.||++.|.|- |.||+++|+.+..-|++|+..+|+.
T Consensus 9 ~~~l~~k~~lITGas~gIG~ala~~l~~~G~~Vi~~~r~~ 48 (245)
T PRK12367 9 QSTWQGKRIGITGASGALGKALTKAFRAKGAKVIGLTHSK 48 (245)
T ss_pred HHhhCCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEECCc
Confidence 34678899999987 6899999999999999999998865
No 397
>PLN02740 Alcohol dehydrogenase-like
Probab=91.98 E-value=0.21 Score=44.38 Aligned_cols=36 Identities=33% Similarity=0.522 Sum_probs=32.4
Q ss_pred cCCCEEEEEcCChHHHHHHHHHccCCC-EEEEEcCCC
Q 027226 151 LLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSW 186 (226)
Q Consensus 151 l~gktvgIvG~G~IG~~vA~~l~afG~-~V~~~~r~~ 186 (226)
-.|.+|.|+|.|.||...++.++.+|+ +|++.+++.
T Consensus 197 ~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~ 233 (381)
T PLN02740 197 QAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINP 233 (381)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCCh
Confidence 358999999999999999999999999 699988764
No 398
>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional
Probab=91.97 E-value=0.3 Score=40.79 Aligned_cols=38 Identities=24% Similarity=0.430 Sum_probs=34.0
Q ss_pred ccCCCEEEEEc-CChHHHHHHHHHccCCCEEEEEcCCCC
Q 027226 150 TLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWA 187 (226)
Q Consensus 150 ~l~gktvgIvG-~G~IG~~vA~~l~afG~~V~~~~r~~~ 187 (226)
.+.+|++.|.| .|.||+++|+.|..-|++|+..+++..
T Consensus 6 ~l~~k~vlItG~s~gIG~~la~~l~~~G~~v~~~~~~~~ 44 (266)
T PRK06171 6 NLQGKIIIVTGGSSGIGLAIVKELLANGANVVNADIHGG 44 (266)
T ss_pred cCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCcc
Confidence 57899999998 689999999999999999999988654
No 399
>PTZ00325 malate dehydrogenase; Provisional
Probab=91.94 E-value=0.53 Score=41.31 Aligned_cols=36 Identities=28% Similarity=0.298 Sum_probs=31.0
Q ss_pred CccCCCEEEEEcC-ChHHHHHHHHHc--cCCCEEEEEcC
Q 027226 149 ETLLGKTVFILGF-GNIGVELAKRLR--PFGVKIIATKR 184 (226)
Q Consensus 149 ~~l~gktvgIvG~-G~IG~~vA~~l~--afG~~V~~~~r 184 (226)
..++.++|+|+|. |+||..+|..+. .+.-++..+|+
T Consensus 4 ~~~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di 42 (321)
T PTZ00325 4 SALKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDI 42 (321)
T ss_pred cCCCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEec
Confidence 4567789999999 999999999998 45568999998
No 400
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=91.92 E-value=0.96 Score=41.23 Aligned_cols=61 Identities=20% Similarity=0.212 Sum_probs=46.6
Q ss_pred CCccCCCEEEEEcC----------ChHHHHHHHHHccCCCEEEEEcCCCCCC-----CcccChhh-hcccCcEEEEe
Q 027226 148 GETLLGKTVFILGF----------GNIGVELAKRLRPFGVKIIATKRSWASH-----SQVSCQSS-GWHCKQVISIF 208 (226)
Q Consensus 148 ~~~l~gktvgIvG~----------G~IG~~vA~~l~afG~~V~~~~r~~~~~-----~~~~~l~e-ll~~sD~v~l~ 208 (226)
+..+.|++|+|+|+ .+=+..+++.|..-|.+|.+|||..... .+...+++ .+..+|.++++
T Consensus 309 ~~~~~~~~V~vlGlafK~~t~D~R~Spa~~ii~~L~~~g~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~ad~vvi~ 385 (425)
T PRK15182 309 GINVEGSSVLILGFTFKENCPDIRNTRIIDVVKELGKYSCKVDIFDPWVDAEEVRREYGIIPVSEVKSSHYDAIIVA 385 (425)
T ss_pred CCCCCCCEEEEEEeEeCCCCCccccCcHHHHHHHHHhCCCEEEEECCCCChhHHHHhcCcccchhhhhcCCCEEEEc
Confidence 45689999999999 6778999999999999999999974322 11111223 36788999998
No 401
>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional
Probab=91.92 E-value=0.28 Score=41.16 Aligned_cols=36 Identities=31% Similarity=0.335 Sum_probs=31.5
Q ss_pred ccCCCEEEEEc---CChHHHHHHHHHccCCCEEEEEcCC
Q 027226 150 TLLGKTVFILG---FGNIGVELAKRLRPFGVKIIATKRS 185 (226)
Q Consensus 150 ~l~gktvgIvG---~G~IG~~vA~~l~afG~~V~~~~r~ 185 (226)
.+.||++.|.| -+.||+++|+.|...|++|+...|.
T Consensus 3 ~~~~k~~lITGa~~~~GIG~a~a~~l~~~G~~v~~~~~~ 41 (261)
T PRK08690 3 FLQGKKILITGMISERSIAYGIAKACREQGAELAFTYVV 41 (261)
T ss_pred ccCCcEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCc
Confidence 47899999999 4589999999999999999887653
No 402
>PRK07589 ornithine cyclodeaminase; Validated
Probab=91.91 E-value=0.23 Score=44.01 Aligned_cols=57 Identities=14% Similarity=0.152 Sum_probs=44.4
Q ss_pred CCEEEEEcCChHHHHHHHHHc-cCCC-EEEEEcCCCCCC--------------CcccChhhhcccCcEEEEec
Q 027226 153 GKTVFILGFGNIGVELAKRLR-PFGV-KIIATKRSWASH--------------SQVSCQSSGWHCKQVISIFN 209 (226)
Q Consensus 153 gktvgIvG~G~IG~~vA~~l~-afG~-~V~~~~r~~~~~--------------~~~~~l~ell~~sD~v~l~~ 209 (226)
-++++|+|.|..++.-++.+. -+.. +|..|+|++... ....+.++.++.||+|+...
T Consensus 129 a~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIIvtaT 201 (346)
T PRK07589 129 SRTMALIGNGAQSEFQALAFKALLGIEEIRLYDIDPAATAKLARNLAGPGLRIVACRSVAEAVEGADIITTVT 201 (346)
T ss_pred CcEEEEECCcHHHHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEec
Confidence 489999999999988877554 5566 699999986542 01467889999999999874
No 403
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=91.90 E-value=0.28 Score=40.77 Aligned_cols=38 Identities=26% Similarity=0.466 Sum_probs=34.0
Q ss_pred CccCCCEEEEEc-CChHHHHHHHHHccCCCEEEEEcCCC
Q 027226 149 ETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW 186 (226)
Q Consensus 149 ~~l~gktvgIvG-~G~IG~~vA~~l~afG~~V~~~~r~~ 186 (226)
..+.+|++.|.| .|.||+.+|++|...|.+|+..+|+.
T Consensus 8 ~~~~~k~ilItGa~g~IG~~la~~l~~~G~~V~~~~r~~ 46 (259)
T PRK08213 8 FDLSGKTALVTGGSRGLGLQIAEALGEAGARVVLSARKA 46 (259)
T ss_pred hCcCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCH
Confidence 457899999998 59999999999999999999998864
No 404
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=91.89 E-value=0.3 Score=41.31 Aligned_cols=33 Identities=24% Similarity=0.394 Sum_probs=29.0
Q ss_pred EEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCCC
Q 027226 155 TVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA 187 (226)
Q Consensus 155 tvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~~ 187 (226)
+|.|.|- |.||+.+++.|..-|.+|++..|++.
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~g~~V~~~~R~~~ 34 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAASVPFLVASRSSS 34 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhCCCcEEEEeCCCc
Confidence 3677776 99999999999988999999999864
No 405
>PRK06196 oxidoreductase; Provisional
Probab=91.87 E-value=0.27 Score=42.47 Aligned_cols=39 Identities=28% Similarity=0.430 Sum_probs=34.4
Q ss_pred CccCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCCC
Q 027226 149 ETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA 187 (226)
Q Consensus 149 ~~l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~~ 187 (226)
..+.||++.|.|- |.||+++|+.|..-|++|+..+|+..
T Consensus 22 ~~l~~k~vlITGasggIG~~~a~~L~~~G~~Vv~~~R~~~ 61 (315)
T PRK06196 22 HDLSGKTAIVTGGYSGLGLETTRALAQAGAHVIVPARRPD 61 (315)
T ss_pred CCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 3578899999997 78999999999999999999998743
No 406
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=91.85 E-value=0.29 Score=40.22 Aligned_cols=36 Identities=28% Similarity=0.350 Sum_probs=32.3
Q ss_pred cCCCEEEEEc-CChHHHHHHHHHccCCCEEEEEcCCC
Q 027226 151 LLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW 186 (226)
Q Consensus 151 l~gktvgIvG-~G~IG~~vA~~l~afG~~V~~~~r~~ 186 (226)
+.++++.|.| .|.||+++++.|..-|.+|+.++|+.
T Consensus 1 ~~~~~ilItGas~~iG~~la~~l~~~g~~v~~~~r~~ 37 (250)
T TIGR03206 1 LKDKTAIVTGGGGGIGGATCRRFAEEGAKVAVFDLNR 37 (250)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCH
Confidence 4689999998 58999999999999999999998864
No 407
>PRK05875 short chain dehydrogenase; Provisional
Probab=91.85 E-value=0.27 Score=41.29 Aligned_cols=37 Identities=22% Similarity=0.304 Sum_probs=33.3
Q ss_pred ccCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCC
Q 027226 150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW 186 (226)
Q Consensus 150 ~l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~ 186 (226)
.+.+|++.|.|- |.||+++++.|..-|++|+.++|+.
T Consensus 4 ~~~~k~vlItGasg~IG~~la~~l~~~G~~V~~~~r~~ 41 (276)
T PRK05875 4 SFQDRTYLVTGGGSGIGKGVAAGLVAAGAAVMIVGRNP 41 (276)
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 367899999996 8999999999999999999999864
No 408
>PRK12862 malic enzyme; Reviewed
Probab=91.84 E-value=1.3 Score=43.47 Aligned_cols=97 Identities=16% Similarity=0.124 Sum_probs=72.6
Q ss_pred CcEEEecCCCCCCCchhHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCCCCCccCCCEEEEEcCChHHHHHHHHHccCCC-
Q 027226 99 GIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV- 177 (226)
Q Consensus 99 gi~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~gktvgIvG~G~IG~~vA~~l~afG~- 177 (226)
+|++.|- +. ..+|=-+++.+++.+|- .+..+.+.+|.|.|.|.-|-.+|+.+...|.
T Consensus 161 ~ip~f~D-D~-----~GTa~v~la~l~~a~~~----------------~~~~~~~~~iv~~GaGaag~~~a~~l~~~G~~ 218 (763)
T PRK12862 161 KIPVFHD-DQ-----HGTAIIVAAALLNGLKL----------------VGKDIEDVKLVASGAGAAALACLDLLVSLGVK 218 (763)
T ss_pred CCceEec-Cc-----ccHHHHHHHHHHHHHHH----------------hCCChhhcEEEEEChhHHHHHHHHHHHHcCCC
Confidence 5777775 33 44666777777777753 3678999999999999999999999999999
Q ss_pred --EEEEEcCCC-----C-C--C---------CcccChhhhcccCcEEEEeccCCccccc
Q 027226 178 --KIIATKRSW-----A-S--H---------SQVSCQSSGWHCKQVISIFNEKGFSSGE 217 (226)
Q Consensus 178 --~V~~~~r~~-----~-~--~---------~~~~~l~ell~~sD~v~l~~~~d~i~~~ 217 (226)
+++.+|+.. + . . ....+|.|+++.+|++.=+...+.+..+
T Consensus 219 ~~~i~~~D~~G~i~~~r~~~l~~~~~~~a~~~~~~~l~e~~~~~~v~iG~s~~g~~~~~ 277 (763)
T PRK12862 219 RENIWVTDIKGVVYEGRTELMDPWKARYAQKTDARTLAEVIEGADVFLGLSAAGVLKPE 277 (763)
T ss_pred cccEEEEcCCCeeeCCCCccccHHHHHHhhhcccCCHHHHHcCCCEEEEcCCCCCCCHH
Confidence 799999642 1 1 1 1345789999999988877666655544
No 409
>PRK06138 short chain dehydrogenase; Provisional
Probab=91.83 E-value=0.28 Score=40.37 Aligned_cols=37 Identities=24% Similarity=0.412 Sum_probs=33.0
Q ss_pred ccCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCC
Q 027226 150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW 186 (226)
Q Consensus 150 ~l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~ 186 (226)
.+.||++.|.|- |.||+++|+.|..-|++|+..+|+.
T Consensus 2 ~~~~k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~ 39 (252)
T PRK06138 2 RLAGRVAIVTGAGSGIGRATAKLFAREGARVVVADRDA 39 (252)
T ss_pred CCCCcEEEEeCCCchHHHHHHHHHHHCCCeEEEecCCH
Confidence 367899999986 8999999999998899999998864
No 410
>PLN02427 UDP-apiose/xylose synthase
Probab=91.82 E-value=0.39 Score=42.67 Aligned_cols=40 Identities=25% Similarity=0.305 Sum_probs=34.3
Q ss_pred CCCccCCCEEEEEc-CChHHHHHHHHHccC-CCEEEEEcCCC
Q 027226 147 TGETLLGKTVFILG-FGNIGVELAKRLRPF-GVKIIATKRSW 186 (226)
Q Consensus 147 ~~~~l~gktvgIvG-~G~IG~~vA~~l~af-G~~V~~~~r~~ 186 (226)
.+..+..++|.|.| .|-||+.+++.|..- |.+|++++|+.
T Consensus 8 ~~~~~~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r~~ 49 (386)
T PLN02427 8 DGKPIKPLTICMIGAGGFIGSHLCEKLMTETPHKVLALDVYN 49 (386)
T ss_pred CCCcccCcEEEEECCcchHHHHHHHHHHhcCCCEEEEEecCc
Confidence 36677888999999 699999999999877 58999999753
No 411
>PRK07825 short chain dehydrogenase; Provisional
Probab=91.82 E-value=0.28 Score=41.14 Aligned_cols=37 Identities=30% Similarity=0.378 Sum_probs=32.9
Q ss_pred ccCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCC
Q 027226 150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW 186 (226)
Q Consensus 150 ~l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~ 186 (226)
.+.|+++.|.|- |.||+++|+.|..-|++|+..+|+.
T Consensus 2 ~~~~~~ilVtGasggiG~~la~~l~~~G~~v~~~~r~~ 39 (273)
T PRK07825 2 DLRGKVVAITGGARGIGLATARALAALGARVAIGDLDE 39 (273)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEECCH
Confidence 467899999986 8999999999999999999998864
No 412
>PLN02780 ketoreductase/ oxidoreductase
Probab=91.82 E-value=0.69 Score=40.28 Aligned_cols=36 Identities=22% Similarity=0.301 Sum_probs=32.4
Q ss_pred cCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCC
Q 027226 151 LLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW 186 (226)
Q Consensus 151 l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~ 186 (226)
.+|+++.|.|. |.||+++|+.+..-|++|+.++|+.
T Consensus 51 ~~g~~~lITGAs~GIG~alA~~La~~G~~Vil~~R~~ 87 (320)
T PLN02780 51 KYGSWALVTGPTDGIGKGFAFQLARKGLNLVLVARNP 87 (320)
T ss_pred ccCCEEEEeCCCcHHHHHHHHHHHHCCCCEEEEECCH
Confidence 46899999995 6899999999999999999999865
No 413
>PRK06114 short chain dehydrogenase; Provisional
Probab=91.81 E-value=0.35 Score=40.17 Aligned_cols=38 Identities=24% Similarity=0.252 Sum_probs=33.6
Q ss_pred CccCCCEEEEEc-CChHHHHHHHHHccCCCEEEEEcCCC
Q 027226 149 ETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW 186 (226)
Q Consensus 149 ~~l~gktvgIvG-~G~IG~~vA~~l~afG~~V~~~~r~~ 186 (226)
..+.||++.|.| -|.||+++|+.|...|++|+..+|+.
T Consensus 4 ~~~~~k~~lVtG~s~gIG~~ia~~l~~~G~~v~~~~r~~ 42 (254)
T PRK06114 4 FDLDGQVAFVTGAGSGIGQRIAIGLAQAGADVALFDLRT 42 (254)
T ss_pred cCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCc
Confidence 357899999997 56999999999999999999998864
No 414
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=91.78 E-value=0.26 Score=41.53 Aligned_cols=35 Identities=23% Similarity=0.422 Sum_probs=32.0
Q ss_pred cCCCEEEEEcCC---hHHHHHHHHHccCCCEEEEEcCC
Q 027226 151 LLGKTVFILGFG---NIGVELAKRLRPFGVKIIATKRS 185 (226)
Q Consensus 151 l~gktvgIvG~G---~IG~~vA~~l~afG~~V~~~~r~ 185 (226)
+.||++.|.|-+ .||+++|+.|..-|++|+..+|+
T Consensus 4 l~~k~~lITGas~~~GIG~aia~~la~~G~~vil~~r~ 41 (262)
T PRK07984 4 LSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQN 41 (262)
T ss_pred cCCCEEEEeCCCCCccHHHHHHHHHHHCCCEEEEEecc
Confidence 689999999997 59999999999999999988775
No 415
>PRK08017 oxidoreductase; Provisional
Probab=91.78 E-value=0.26 Score=40.68 Aligned_cols=34 Identities=35% Similarity=0.504 Sum_probs=31.0
Q ss_pred CEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCCC
Q 027226 154 KTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA 187 (226)
Q Consensus 154 ktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~~ 187 (226)
|++.|.|. |.||+++++.|..-|.+|+..+|+..
T Consensus 3 k~vlVtGasg~IG~~la~~l~~~g~~v~~~~r~~~ 37 (256)
T PRK08017 3 KSVLITGCSSGIGLEAALELKRRGYRVLAACRKPD 37 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 68999998 99999999999999999999988753
No 416
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=91.77 E-value=0.23 Score=42.77 Aligned_cols=34 Identities=21% Similarity=0.203 Sum_probs=28.9
Q ss_pred CCCEEEEEcCChHHHHHHHHHccCCCE-EEEEcCC
Q 027226 152 LGKTVFILGFGNIGVELAKRLRPFGVK-IIATKRS 185 (226)
Q Consensus 152 ~gktvgIvG~G~IG~~vA~~l~afG~~-V~~~~r~ 185 (226)
.++++.|+|.|.||...+..++.+|++ |+++++.
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~ 178 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETN 178 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCC
Confidence 478899999999999999999999998 5555553
No 417
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=91.76 E-value=0.29 Score=40.67 Aligned_cols=37 Identities=30% Similarity=0.332 Sum_probs=33.4
Q ss_pred CccCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCC
Q 027226 149 ETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRS 185 (226)
Q Consensus 149 ~~l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~ 185 (226)
..+.||++.|.|- |.||+++|+.|...|++|+..+|+
T Consensus 11 ~~l~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~ 48 (258)
T PRK06935 11 FSLDGKVAIVTGGNTGLGQGYAVALAKAGADIIITTHG 48 (258)
T ss_pred ccCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence 3588999999986 799999999999999999999886
No 418
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=91.74 E-value=0.12 Score=44.50 Aligned_cols=44 Identities=34% Similarity=0.455 Sum_probs=37.5
Q ss_pred CCCCCCCccCCCEEEEEcCChHHHHHHHHHccCCC-EEEEEcCCC
Q 027226 143 LGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSW 186 (226)
Q Consensus 143 w~~~~~~~l~gktvgIvG~G~IG~~vA~~l~afG~-~V~~~~r~~ 186 (226)
|.......|...+|.|+|+|.+|.++|+-|...|. +|..+|...
T Consensus 9 ~G~eaq~kL~~s~VLIvG~gGLG~EiaKnLalaGVg~itI~D~d~ 53 (286)
T cd01491 9 LGHEAMKKLQKSNVLISGLGGLGVEIAKNLILAGVKSVTLHDTKP 53 (286)
T ss_pred cCHHHHHHHhcCcEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCc
Confidence 54444578999999999999999999999999999 588888754
No 419
>PRK11891 aspartate carbamoyltransferase; Provisional
Probab=91.71 E-value=3 Score=38.04 Aligned_cols=59 Identities=17% Similarity=0.133 Sum_probs=47.3
Q ss_pred ccCCCEEEEEcCC---hHHHHHHHHHccC-CCEEEEEcCCCCC-C---C-----------cccChhhhcccCcEEEEe
Q 027226 150 TLLGKTVFILGFG---NIGVELAKRLRPF-GVKIIATKRSWAS-H---S-----------QVSCQSSGWHCKQVISIF 208 (226)
Q Consensus 150 ~l~gktvgIvG~G---~IG~~vA~~l~af-G~~V~~~~r~~~~-~---~-----------~~~~l~ell~~sD~v~l~ 208 (226)
.+.|+||+++|=+ ++....+..+..| ||+|....|..-. . . -..++++.++.+|+|...
T Consensus 238 ~l~G~kIa~vGD~~~~rv~~Sl~~~la~~~G~~v~l~~P~~~~~~~~~~~~~~~~G~~v~~~~d~~eav~~ADVVYt~ 315 (429)
T PRK11891 238 IVDGAHIALVGDLKYGRTVHSLVKLLALYRGLKFTLVSPPTLEMPAYIVEQISRNGHVIEQTDDLAAGLRGADVVYAT 315 (429)
T ss_pred CcCCCEEEEECcCCCChHHHHHHHHHHHhcCCEEEEECCCccccCHHHHHHHHhcCCeEEEEcCHHHHhCCCCEEEEc
Confidence 4889999999984 8899999988877 9999999885421 1 0 146788999999999885
No 420
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=91.69 E-value=0.34 Score=42.64 Aligned_cols=56 Identities=13% Similarity=0.127 Sum_probs=46.4
Q ss_pred CCEEEEEcCChHHHHHHHHHc-cCCC-EEEEEcCCCCCC---------------CcccChhhhcccCcEEEEe
Q 027226 153 GKTVFILGFGNIGVELAKRLR-PFGV-KIIATKRSWASH---------------SQVSCQSSGWHCKQVISIF 208 (226)
Q Consensus 153 gktvgIvG~G~IG~~vA~~l~-afG~-~V~~~~r~~~~~---------------~~~~~l~ell~~sD~v~l~ 208 (226)
-++++|||.|..++.-++.++ -|+. +|..|+|++... ....+.++.++.||+|+-.
T Consensus 130 a~~laiIGaG~qA~~ql~a~~~v~~~~~I~i~~r~~~~~e~~a~~l~~~~~~~v~a~~s~~~av~~aDiIvt~ 202 (330)
T COG2423 130 ASTLAIIGAGAQARTQLEALKAVRDIREIRVYSRDPEAAEAFAARLRKRGGEAVGAADSAEEAVEGADIVVTA 202 (330)
T ss_pred CcEEEEECCcHHHHHHHHHHHhhCCccEEEEEcCCHHHHHHHHHHHHhhcCccceeccCHHHHhhcCCEEEEe
Confidence 479999999999999999887 6676 699999986543 1356778999999999988
No 421
>PRK12562 ornithine carbamoyltransferase subunit F; Provisional
Probab=91.68 E-value=1.9 Score=38.00 Aligned_cols=59 Identities=12% Similarity=0.037 Sum_probs=47.2
Q ss_pred ccCCCEEEEEcCC--hHHHHHHHHHccCCCEEEEEcCCCCCC-------------------CcccChhhhcccCcEEEEe
Q 027226 150 TLLGKTVFILGFG--NIGVELAKRLRPFGVKIIATKRSWASH-------------------SQVSCQSSGWHCKQVISIF 208 (226)
Q Consensus 150 ~l~gktvgIvG~G--~IG~~vA~~l~afG~~V~~~~r~~~~~-------------------~~~~~l~ell~~sD~v~l~ 208 (226)
.+.|++|+++|-+ ++.+..+..+..||++|....|..-.. ....++++.++.+|+|...
T Consensus 153 ~l~gl~va~vGD~~~~v~~S~~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvyt~ 232 (334)
T PRK12562 153 AFNEMTLVYAGDARNNMGNSMLEAAALTGLDLRLVAPQACWPEASLVAECSALAQKHGGKITLTEDIAAGVKGADFIYTD 232 (334)
T ss_pred CcCCcEEEEECCCCCCHHHHHHHHHHHcCCEEEEECCcccCCcHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEc
Confidence 5789999999976 789999999999999999988753111 0136678899999999886
No 422
>PRK11579 putative oxidoreductase; Provisional
Probab=91.67 E-value=0.34 Score=42.65 Aligned_cols=55 Identities=18% Similarity=0.154 Sum_probs=37.6
Q ss_pred CEEEEEcCChHHHH-HHHHHcc-CCCEEEE-EcCCCCCC-------CcccChhhhccc--CcEEEEe
Q 027226 154 KTVFILGFGNIGVE-LAKRLRP-FGVKIIA-TKRSWASH-------SQVSCQSSGWHC--KQVISIF 208 (226)
Q Consensus 154 ktvgIvG~G~IG~~-vA~~l~a-fG~~V~~-~~r~~~~~-------~~~~~l~ell~~--sD~v~l~ 208 (226)
-+|||||+|.||+. .+..++. -++++.+ +|+..... ..+.++++++.. -|+|++.
T Consensus 5 irvgiiG~G~i~~~~~~~~~~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~ell~~~~vD~V~I~ 71 (346)
T PRK11579 5 IRVGLIGYGYASKTFHAPLIAGTPGLELAAVSSSDATKVKADWPTVTVVSEPQHLFNDPNIDLIVIP 71 (346)
T ss_pred ceEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCCHHHHHhhCCCCceeCCHHHHhcCCCCCEEEEc
Confidence 48999999999985 5665544 4788876 55543210 125789999964 5777766
No 423
>PRK07478 short chain dehydrogenase; Provisional
Probab=91.66 E-value=0.25 Score=40.95 Aligned_cols=38 Identities=34% Similarity=0.403 Sum_probs=33.6
Q ss_pred ccCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCCC
Q 027226 150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA 187 (226)
Q Consensus 150 ~l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~~ 187 (226)
.+.+|++.|.|- |.||+++|+.|..-|.+|+..+|+.+
T Consensus 3 ~~~~k~~lItGas~giG~~ia~~l~~~G~~v~~~~r~~~ 41 (254)
T PRK07478 3 RLNGKVAIITGASSGIGRAAAKLFAREGAKVVVGARRQA 41 (254)
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 467899999985 78999999999999999999998643
No 424
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=91.64 E-value=0.15 Score=37.53 Aligned_cols=49 Identities=16% Similarity=0.237 Sum_probs=31.7
Q ss_pred cCChHHHHHHHHHccC----CCEEEEEcCCC---CCC--------CcccChhhhcc--cCcEEEEe
Q 027226 160 GFGNIGVELAKRLRPF----GVKIIATKRSW---ASH--------SQVSCQSSGWH--CKQVISIF 208 (226)
Q Consensus 160 G~G~IG~~vA~~l~af----G~~V~~~~r~~---~~~--------~~~~~l~ell~--~sD~v~l~ 208 (226)
|+|.||+.+++.+... +++|.++-.+. ... ....++++++. ..|+++=.
T Consensus 1 G~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvVE~ 66 (117)
T PF03447_consen 1 GFGNVGRGLLEQLKEQQERIDLEVVGVADRSMLISKDWAASFPDEAFTTDLEELIDDPDIDVVVEC 66 (117)
T ss_dssp --SHHHHHHHHHHHHTHHHCEEEEEEEEESSEEEETTHHHHHTHSCEESSHHHHHTHTT-SEEEE-
T ss_pred CCCHHHHHHHHHHHhCcccCCEEEEEEEECCchhhhhhhhhcccccccCCHHHHhcCcCCCEEEEC
Confidence 8999999999999854 78877765443 111 23567788887 67777655
No 425
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=91.63 E-value=0.3 Score=40.86 Aligned_cols=37 Identities=22% Similarity=0.374 Sum_probs=33.1
Q ss_pred ccCCCEEEEEcC---ChHHHHHHHHHccCCCEEEEEcCCC
Q 027226 150 TLLGKTVFILGF---GNIGVELAKRLRPFGVKIIATKRSW 186 (226)
Q Consensus 150 ~l~gktvgIvG~---G~IG~~vA~~l~afG~~V~~~~r~~ 186 (226)
.+.+|++.|.|- +.||+++|+.|..-|++|+..+|+.
T Consensus 4 ~~~~k~~lItGa~~s~GIG~a~a~~la~~G~~v~l~~r~~ 43 (256)
T PRK07889 4 LLEGKRILVTGVITDSSIAFHVARVAQEQGAEVVLTGFGR 43 (256)
T ss_pred cccCCEEEEeCCCCcchHHHHHHHHHHHCCCEEEEecCcc
Confidence 478999999996 7999999999999999999988754
No 426
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=91.63 E-value=0.29 Score=43.21 Aligned_cols=35 Identities=29% Similarity=0.425 Sum_probs=31.7
Q ss_pred CCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCC
Q 027226 152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW 186 (226)
Q Consensus 152 ~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~ 186 (226)
.|++|.|.|.|.||..++..++.+|++|++.+.+.
T Consensus 183 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~ 217 (360)
T PLN02586 183 PGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSS 217 (360)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 58899999999999999999999999998876654
No 427
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=91.61 E-value=0.26 Score=43.62 Aligned_cols=36 Identities=31% Similarity=0.410 Sum_probs=32.2
Q ss_pred cCCCEEEEEcCChHHHHHHHHHccCCC-EEEEEcCCC
Q 027226 151 LLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSW 186 (226)
Q Consensus 151 l~gktvgIvG~G~IG~~vA~~l~afG~-~V~~~~r~~ 186 (226)
-.|.+|.|.|.|.||...+..++.+|+ +|++.+++.
T Consensus 184 ~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~ 220 (368)
T TIGR02818 184 EEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINP 220 (368)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCH
Confidence 347999999999999999999999999 799988754
No 428
>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional
Probab=91.61 E-value=0.28 Score=41.54 Aligned_cols=37 Identities=30% Similarity=0.383 Sum_probs=32.5
Q ss_pred CccCCCEEEEEcC---ChHHHHHHHHHccCCCEEEEEcCC
Q 027226 149 ETLLGKTVFILGF---GNIGVELAKRLRPFGVKIIATKRS 185 (226)
Q Consensus 149 ~~l~gktvgIvG~---G~IG~~vA~~l~afG~~V~~~~r~ 185 (226)
..+.||++.|.|- +.||+++|+.|..-|++|+...|+
T Consensus 6 ~~~~~k~~lItGas~~~GIG~aia~~la~~G~~V~l~~r~ 45 (272)
T PRK08159 6 GLMAGKRGLILGVANNRSIAWGIAKACRAAGAELAFTYQG 45 (272)
T ss_pred ccccCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCc
Confidence 4577899999998 479999999999999999887664
No 429
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=91.60 E-value=0.36 Score=43.45 Aligned_cols=58 Identities=16% Similarity=0.022 Sum_probs=48.6
Q ss_pred cCCCEEEEEcC----------ChHHHHHHHHHccCCCEEEEEcCCCCCC-----CcccChhhhcccCcEEEEe
Q 027226 151 LLGKTVFILGF----------GNIGVELAKRLRPFGVKIIATKRSWASH-----SQVSCQSSGWHCKQVISIF 208 (226)
Q Consensus 151 l~gktvgIvG~----------G~IG~~vA~~l~afG~~V~~~~r~~~~~-----~~~~~l~ell~~sD~v~l~ 208 (226)
..|++|+|+|+ .+-...+++.|..-|++|.+|||..+.. .-.++++++++.+|++.+.
T Consensus 294 ~~~~~i~vlGlafK~~t~D~R~Sp~~~i~~~L~~~G~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (388)
T PRK15057 294 RKPQVVGIYRLIMKSGSDNFRASSIQGIMKRIKAKGVEVIIYEPVMKEDSFFNSRLERDLATFKQQADVIISN 366 (388)
T ss_pred hcCCEEEEEcceeCCCCCccccChHHHHHHHHHhCCCEEEEECCCCCchhhcCCeeeCCHHHHHHhCCEEEEc
Confidence 46899999999 4567899999999999999999975543 1356778899999999988
No 430
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=91.59 E-value=0.31 Score=40.12 Aligned_cols=36 Identities=36% Similarity=0.547 Sum_probs=32.9
Q ss_pred cCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCC
Q 027226 151 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW 186 (226)
Q Consensus 151 l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~ 186 (226)
..|++|.|.|.|.+|+.+++.++..|.+|++.+++.
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~ 168 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSD 168 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCH
Confidence 457899999999999999999999999999998864
No 431
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=91.57 E-value=0.25 Score=42.81 Aligned_cols=35 Identities=26% Similarity=0.389 Sum_probs=32.0
Q ss_pred CCCEEEEEcCChHHHHHHHHHccCCCE-EEEEcCCC
Q 027226 152 LGKTVFILGFGNIGVELAKRLRPFGVK-IIATKRSW 186 (226)
Q Consensus 152 ~gktvgIvG~G~IG~~vA~~l~afG~~-V~~~~r~~ 186 (226)
.|.+|.|+|.|.+|..++..++.+|++ |++.+++.
T Consensus 163 ~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~ 198 (339)
T cd08239 163 GRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSP 198 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCH
Confidence 389999999999999999999999999 99988753
No 432
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=91.57 E-value=0.14 Score=41.99 Aligned_cols=54 Identities=17% Similarity=0.214 Sum_probs=43.0
Q ss_pred EEEEcC-ChHHHHHHHHHccCCCEEEEEcCCCCCC-----------------CcccChhhhcccCcEEEEec
Q 027226 156 VFILGF-GNIGVELAKRLRPFGVKIIATKRSWASH-----------------SQVSCQSSGWHCKQVISIFN 209 (226)
Q Consensus 156 vgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~~~~-----------------~~~~~l~ell~~sD~v~l~~ 209 (226)
|.|+|. |.+|+.+++.|..-|.+|.+..|..+.. .+.++|.+.++.+|.+.+.-
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~~~~~~~~l~~~g~~vv~~d~~~~~~l~~al~g~d~v~~~~ 72 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAGFSVRALVRDPSSDRAQQLQALGAEVVEADYDDPESLVAALKGVDAVFSVT 72 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTGCEEEEESSSHHHHHHHHHHTTTEEEES-TT-HHHHHHHHTTCSEEEEES
T ss_pred CEEECCccHHHHHHHHHHHhCCCCcEEEEeccchhhhhhhhcccceEeecccCCHHHHHHHHcCCceEEeec
Confidence 678885 9999999999999999999999976432 12455777889999987763
No 433
>PRK12742 oxidoreductase; Provisional
Probab=91.55 E-value=0.36 Score=39.35 Aligned_cols=35 Identities=29% Similarity=0.447 Sum_probs=31.0
Q ss_pred ccCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcC
Q 027226 150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKR 184 (226)
Q Consensus 150 ~l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r 184 (226)
.+.+|++.|.|- |.||+++|+.|...|++|+...+
T Consensus 3 ~~~~k~vlItGasggIG~~~a~~l~~~G~~v~~~~~ 38 (237)
T PRK12742 3 AFTGKKVLVLGGSRGIGAAIVRRFVTDGANVRFTYA 38 (237)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEecC
Confidence 477999999995 89999999999999999987655
No 434
>PRK07856 short chain dehydrogenase; Provisional
Probab=91.54 E-value=0.28 Score=40.64 Aligned_cols=37 Identities=24% Similarity=0.428 Sum_probs=33.2
Q ss_pred ccCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCC
Q 027226 150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW 186 (226)
Q Consensus 150 ~l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~ 186 (226)
.+.||++.|.|- |.||+++|+.|..-|.+|+..+|+.
T Consensus 3 ~~~~k~~lItGas~gIG~~la~~l~~~g~~v~~~~r~~ 40 (252)
T PRK07856 3 DLTGRVVLVTGGTRGIGAGIARAFLAAGATVVVCGRRA 40 (252)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCh
Confidence 467999999985 7899999999999999999999875
No 435
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=91.54 E-value=0.31 Score=40.47 Aligned_cols=37 Identities=30% Similarity=0.417 Sum_probs=33.1
Q ss_pred ccCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCC
Q 027226 150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW 186 (226)
Q Consensus 150 ~l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~ 186 (226)
.+.+|++.|.|- |.||+++|+.|..-|++|+.++|+.
T Consensus 5 ~~~~k~vlVtGas~gIG~~la~~l~~~G~~v~~~~r~~ 42 (260)
T PRK12823 5 RFAGKVVVVTGAAQGIGRGVALRAAAEGARVVLVDRSE 42 (260)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCch
Confidence 478899999987 7899999999999999999999863
No 436
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=91.54 E-value=0.28 Score=40.01 Aligned_cols=37 Identities=32% Similarity=0.435 Sum_probs=32.8
Q ss_pred cCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCCC
Q 027226 151 LLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA 187 (226)
Q Consensus 151 l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~~ 187 (226)
+.++++.|.|- |.||+.+++.+..-|.+|+.++|++.
T Consensus 3 ~~~~~ilItGasg~iG~~l~~~l~~~g~~v~~~~r~~~ 40 (246)
T PRK05653 3 LQGKTALVTGASRGIGRAIALRLAADGAKVVIYDSNEE 40 (246)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChh
Confidence 46789999985 99999999999999999999999754
No 437
>PRK05872 short chain dehydrogenase; Provisional
Probab=91.51 E-value=0.36 Score=41.34 Aligned_cols=40 Identities=38% Similarity=0.473 Sum_probs=35.0
Q ss_pred CCccCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCCC
Q 027226 148 GETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA 187 (226)
Q Consensus 148 ~~~l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~~ 187 (226)
...+.||++.|.|- |.||+++|+.+..-|++|+..+|+..
T Consensus 4 ~~~l~gk~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~ 44 (296)
T PRK05872 4 MTSLAGKVVVVTGAARGIGAELARRLHARGAKLALVDLEEA 44 (296)
T ss_pred CCCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 35688999999985 88999999999999999999998643
No 438
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=91.48 E-value=0.31 Score=42.75 Aligned_cols=40 Identities=33% Similarity=0.265 Sum_probs=35.3
Q ss_pred CCCccCCCEEEEEc-CChHHHHHHHHHccCCCEEEEEcCCC
Q 027226 147 TGETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW 186 (226)
Q Consensus 147 ~~~~l~gktvgIvG-~G~IG~~vA~~l~afG~~V~~~~r~~ 186 (226)
.+++..+++|.|.| .|-||+.+++.|..-|.+|++.+|..
T Consensus 4 ~~~~~~~~~vLVtG~~GfIG~~l~~~L~~~G~~V~~~~r~~ 44 (353)
T PLN02896 4 EGRESATGTYCVTGATGYIGSWLVKLLLQRGYTVHATLRDP 44 (353)
T ss_pred cccccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCh
Confidence 35788899999999 69999999999998899999988753
No 439
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=91.46 E-value=0.32 Score=40.92 Aligned_cols=38 Identities=34% Similarity=0.410 Sum_probs=34.1
Q ss_pred CccCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCC
Q 027226 149 ETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW 186 (226)
Q Consensus 149 ~~l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~ 186 (226)
..+++|++.|.|- |.||+++++.|..-|.+|+.++|+.
T Consensus 6 ~~~~~k~vlVtGas~giG~~ia~~l~~~G~~V~~~~r~~ 44 (278)
T PRK08277 6 FSLKGKVAVITGGGGVLGGAMAKELARAGAKVAILDRNQ 44 (278)
T ss_pred eccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence 3578999999996 8999999999999999999999864
No 440
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=91.44 E-value=0.33 Score=40.48 Aligned_cols=36 Identities=31% Similarity=0.436 Sum_probs=32.5
Q ss_pred cCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCC
Q 027226 151 LLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW 186 (226)
Q Consensus 151 l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~ 186 (226)
+.||++.|.|- |.||+++|+.|...|++|+..+|+.
T Consensus 4 ~~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~ 40 (263)
T PRK06200 4 LHGQVALITGGGSGIGRALVERFLAEGARVAVLERSA 40 (263)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence 67899999986 6899999999999999999999864
No 441
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=91.39 E-value=0.33 Score=40.17 Aligned_cols=38 Identities=24% Similarity=0.441 Sum_probs=34.0
Q ss_pred CccCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCC
Q 027226 149 ETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW 186 (226)
Q Consensus 149 ~~l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~ 186 (226)
..+.||++.|.|- |.||+++|+.+..-|++|+.++|+.
T Consensus 7 ~~~~~k~ilItGas~~IG~~la~~l~~~G~~v~~~~r~~ 45 (256)
T PRK06124 7 FSLAGQVALVTGSARGLGFEIARALAGAGAHVLVNGRNA 45 (256)
T ss_pred cCCCCCEEEEECCCchHHHHHHHHHHHcCCeEEEEeCCH
Confidence 3578999999986 7899999999998999999999974
No 442
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=91.37 E-value=0.33 Score=40.27 Aligned_cols=38 Identities=26% Similarity=0.393 Sum_probs=33.5
Q ss_pred ccCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCCC
Q 027226 150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA 187 (226)
Q Consensus 150 ~l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~~ 187 (226)
.+.+|++.|.|- |.||+++|+.|...|++|+..+|+..
T Consensus 3 ~l~~~~vlItGas~~iG~~ia~~l~~~G~~v~~~~r~~~ 41 (257)
T PRK07067 3 RLQGKVALLTGAASGIGEAVAERYLAEGARVVIADIKPA 41 (257)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEcCCHH
Confidence 367899999984 99999999999999999999998654
No 443
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=91.36 E-value=0.27 Score=43.34 Aligned_cols=35 Identities=34% Similarity=0.523 Sum_probs=32.2
Q ss_pred CCCEEEEEcCChHHHHHHHHHccCCC-EEEEEcCCC
Q 027226 152 LGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSW 186 (226)
Q Consensus 152 ~gktvgIvG~G~IG~~vA~~l~afG~-~V~~~~r~~ 186 (226)
.|.+|.|.|.|.||...++.++.+|+ +|++.+++.
T Consensus 187 ~g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~~ 222 (369)
T cd08301 187 KGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNP 222 (369)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCH
Confidence 58999999999999999999999999 799998764
No 444
>PRK08278 short chain dehydrogenase; Provisional
Probab=91.35 E-value=0.36 Score=40.72 Aligned_cols=38 Identities=34% Similarity=0.510 Sum_probs=33.6
Q ss_pred ccCCCEEEEEc-CChHHHHHHHHHccCCCEEEEEcCCCC
Q 027226 150 TLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWA 187 (226)
Q Consensus 150 ~l~gktvgIvG-~G~IG~~vA~~l~afG~~V~~~~r~~~ 187 (226)
.+.+|++.|.| .|.||+++|+.|...|++|+..+|+..
T Consensus 3 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~ 41 (273)
T PRK08278 3 SLSGKTLFITGASRGIGLAIALRAARDGANIVIAAKTAE 41 (273)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecccc
Confidence 46789999998 589999999999999999999998653
No 445
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=91.32 E-value=0.66 Score=39.48 Aligned_cols=30 Identities=33% Similarity=0.509 Sum_probs=25.1
Q ss_pred EEEEEc-CChHHHHHHHHHcc-CCCEEEE-EcC
Q 027226 155 TVFILG-FGNIGVELAKRLRP-FGVKIIA-TKR 184 (226)
Q Consensus 155 tvgIvG-~G~IG~~vA~~l~a-fG~~V~~-~~r 184 (226)
+|+|+| +|++|+.+++.+.. -++++.+ ++|
T Consensus 3 kV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~ 35 (266)
T TIGR00036 3 KVAVAGAAGRMGRELIKAALAAEGLQLVAAFER 35 (266)
T ss_pred EEEEECCCCHHHHHHHHHHHhCCCCEEEEEEec
Confidence 799999 79999999999874 5888666 554
No 446
>PRK02255 putrescine carbamoyltransferase; Provisional
Probab=91.32 E-value=2.6 Score=37.26 Aligned_cols=60 Identities=10% Similarity=-0.004 Sum_probs=47.4
Q ss_pred CccCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCCC---CCC----------------cccChhhhcccCcEEEEe
Q 027226 149 ETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA---SHS----------------QVSCQSSGWHCKQVISIF 208 (226)
Q Consensus 149 ~~l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~~---~~~----------------~~~~l~ell~~sD~v~l~ 208 (226)
..+.|++|+++|= .++....+..+..||++|....|..- ... ...++++.++.+|+|..-
T Consensus 150 ~~l~glkv~~vGD~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~eav~~aDvvy~~ 229 (338)
T PRK02255 150 KKLEDCKVVFVGDATQVCVSLMFIATKMGMDFVHFGPKGYQLPEEHLAIAEENCEVSGGSVLVTDDVDEAVKDADFVYTD 229 (338)
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHhCCCEEEEECCCccccCHHHHHHHHHHHHhcCCeEEEEcCHHHHhCCCCEEEEc
Confidence 3589999999997 57888888889999999999988531 110 136788999999999883
No 447
>PRK05086 malate dehydrogenase; Provisional
Probab=91.32 E-value=0.56 Score=40.91 Aligned_cols=34 Identities=32% Similarity=0.349 Sum_probs=27.2
Q ss_pred CEEEEEcC-ChHHHHHHHHH---ccCCCEEEEEcCCCC
Q 027226 154 KTVFILGF-GNIGVELAKRL---RPFGVKIIATKRSWA 187 (226)
Q Consensus 154 ktvgIvG~-G~IG~~vA~~l---~afG~~V~~~~r~~~ 187 (226)
++|+|+|. |.||+++|..+ ..++..+..+++...
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~ 38 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPV 38 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCC
Confidence 47999999 99999999777 345668888887543
No 448
>PRK05993 short chain dehydrogenase; Provisional
Probab=91.31 E-value=0.32 Score=41.08 Aligned_cols=36 Identities=28% Similarity=0.428 Sum_probs=32.1
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCCC
Q 027226 152 LGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA 187 (226)
Q Consensus 152 ~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~~ 187 (226)
.+|++.|.|- |.||+++|+.|..-|.+|+..+|+..
T Consensus 3 ~~k~vlItGasggiG~~la~~l~~~G~~Vi~~~r~~~ 39 (277)
T PRK05993 3 MKRSILITGCSSGIGAYCARALQSDGWRVFATCRKEE 39 (277)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence 3689999997 99999999999999999999998753
No 449
>PRK07063 short chain dehydrogenase; Provisional
Probab=91.29 E-value=0.29 Score=40.65 Aligned_cols=37 Identities=22% Similarity=0.342 Sum_probs=33.0
Q ss_pred ccCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCC
Q 027226 150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW 186 (226)
Q Consensus 150 ~l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~ 186 (226)
.+.+|++.|.|- |.||+++|+.|..-|++|+..+|+.
T Consensus 4 ~l~~k~vlVtGas~gIG~~~a~~l~~~G~~vv~~~r~~ 41 (260)
T PRK07063 4 RLAGKVALVTGAAQGIGAAIARAFAREGAAVALADLDA 41 (260)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence 478999999984 7999999999999999999998853
No 450
>PRK08226 short chain dehydrogenase; Provisional
Probab=91.29 E-value=0.35 Score=40.22 Aligned_cols=37 Identities=32% Similarity=0.444 Sum_probs=33.2
Q ss_pred ccCCCEEEEEc-CChHHHHHHHHHccCCCEEEEEcCCC
Q 027226 150 TLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW 186 (226)
Q Consensus 150 ~l~gktvgIvG-~G~IG~~vA~~l~afG~~V~~~~r~~ 186 (226)
.+.++++.|.| .|.||+++|+.|..-|.+|+..+|+.
T Consensus 3 ~~~~~~~lItG~s~giG~~la~~l~~~G~~Vv~~~r~~ 40 (263)
T PRK08226 3 KLTGKTALITGALQGIGEGIARVFARHGANLILLDISP 40 (263)
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCH
Confidence 36789999997 78899999999999999999999864
No 451
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=91.27 E-value=0.36 Score=40.26 Aligned_cols=37 Identities=32% Similarity=0.375 Sum_probs=32.3
Q ss_pred CccCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCC
Q 027226 149 ETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRS 185 (226)
Q Consensus 149 ~~l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~ 185 (226)
..+.||++.|.|- |.||+++|+.|..-|++|+...++
T Consensus 4 ~~l~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~ 41 (260)
T PRK08416 4 NEMKGKTLVISGGTRGIGKAIVYEFAQSGVNIAFTYNS 41 (260)
T ss_pred cccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCC
Confidence 4688999999986 789999999999999999887553
No 452
>PRK09242 tropinone reductase; Provisional
Probab=91.27 E-value=0.35 Score=40.12 Aligned_cols=37 Identities=27% Similarity=0.480 Sum_probs=33.3
Q ss_pred ccCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCC
Q 027226 150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW 186 (226)
Q Consensus 150 ~l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~ 186 (226)
.+.||++.|.|- |.||+++++++...|++|+..+|+.
T Consensus 6 ~~~~k~~lItGa~~gIG~~~a~~l~~~G~~v~~~~r~~ 43 (257)
T PRK09242 6 RLDGQTALITGASKGIGLAIAREFLGLGADVLIVARDA 43 (257)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCH
Confidence 578999999985 8999999999999999999998864
No 453
>PRK06223 malate dehydrogenase; Reviewed
Probab=91.26 E-value=0.33 Score=41.92 Aligned_cols=34 Identities=26% Similarity=0.345 Sum_probs=29.2
Q ss_pred CEEEEEcCChHHHHHHHHHccCCC-EEEEEcCCCC
Q 027226 154 KTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWA 187 (226)
Q Consensus 154 ktvgIvG~G~IG~~vA~~l~afG~-~V~~~~r~~~ 187 (226)
++|+|+|.|.+|..+|..+...|. +|..+|+...
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~ 37 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVEG 37 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCc
Confidence 589999999999999999986554 9999998543
No 454
>PRK07035 short chain dehydrogenase; Provisional
Probab=91.26 E-value=0.36 Score=39.87 Aligned_cols=37 Identities=32% Similarity=0.494 Sum_probs=33.6
Q ss_pred ccCCCEEEEEc-CChHHHHHHHHHccCCCEEEEEcCCC
Q 027226 150 TLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW 186 (226)
Q Consensus 150 ~l~gktvgIvG-~G~IG~~vA~~l~afG~~V~~~~r~~ 186 (226)
.+.+|++.|.| -|.||+++++.|..-|++|+..+|+.
T Consensus 5 ~l~~k~vlItGas~gIG~~l~~~l~~~G~~Vi~~~r~~ 42 (252)
T PRK07035 5 DLTGKIALVTGASRGIGEAIAKLLAQQGAHVIVSSRKL 42 (252)
T ss_pred ccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 57889999998 68999999999999999999999864
No 455
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=91.25 E-value=0.32 Score=40.23 Aligned_cols=37 Identities=30% Similarity=0.380 Sum_probs=33.8
Q ss_pred ccCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCC
Q 027226 150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW 186 (226)
Q Consensus 150 ~l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~ 186 (226)
.+.+|++.|.|- |.||+.+++.|..-|.+|+..+|.+
T Consensus 4 ~~~~~~vlItGasg~iG~~la~~l~~~G~~v~~~~r~~ 41 (262)
T PRK13394 4 NLNGKTAVVTGAASGIGKEIALELARAGAAVAIADLNQ 41 (262)
T ss_pred cCCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCCh
Confidence 467899999987 9999999999999999999998875
No 456
>PLN02240 UDP-glucose 4-epimerase
Probab=91.24 E-value=0.38 Score=41.91 Aligned_cols=36 Identities=28% Similarity=0.510 Sum_probs=31.9
Q ss_pred ccCCCEEEEEc-CChHHHHHHHHHccCCCEEEEEcCC
Q 027226 150 TLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRS 185 (226)
Q Consensus 150 ~l~gktvgIvG-~G~IG~~vA~~l~afG~~V~~~~r~ 185 (226)
.+.+++|.|.| .|.||+.+++.|..-|.+|+++++.
T Consensus 2 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~~~ 38 (352)
T PLN02240 2 SLMGRTILVTGGAGYIGSHTVLQLLLAGYKVVVIDNL 38 (352)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence 46789999997 5999999999999889999999764
No 457
>PRK06997 enoyl-(acyl carrier protein) reductase; Provisional
Probab=91.22 E-value=0.33 Score=40.68 Aligned_cols=35 Identities=29% Similarity=0.375 Sum_probs=30.8
Q ss_pred ccCCCEEEEEcC---ChHHHHHHHHHccCCCEEEEEcC
Q 027226 150 TLLGKTVFILGF---GNIGVELAKRLRPFGVKIIATKR 184 (226)
Q Consensus 150 ~l~gktvgIvG~---G~IG~~vA~~l~afG~~V~~~~r 184 (226)
.+.+|++.|.|- +.||+++|++|...|++|+..++
T Consensus 3 ~l~~k~vlItGas~~~GIG~a~a~~l~~~G~~v~~~~~ 40 (260)
T PRK06997 3 FLAGKRILITGLLSNRSIAYGIAKACKREGAELAFTYV 40 (260)
T ss_pred ccCCcEEEEeCCCCCCcHHHHHHHHHHHCCCeEEEEcc
Confidence 368999999994 68999999999999999988754
No 458
>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed
Probab=91.21 E-value=1.4 Score=43.07 Aligned_cols=97 Identities=15% Similarity=0.177 Sum_probs=71.6
Q ss_pred CcEEEecCCCCCCCchhHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCCCCCccCCCEEEEEcCChHHHHHHHHHccCCC-
Q 027226 99 GIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV- 177 (226)
Q Consensus 99 gi~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~gktvgIvG~G~IG~~vA~~l~afG~- 177 (226)
+|++.|- +. ..+|=-+++.+++.+|- .+..+.+.++.|.|.|.-|-.+|+.+...|+
T Consensus 153 ~ip~f~D-D~-----~GTa~v~lA~l~na~~~----------------~~~~~~~~~iv~~GaGaag~~~a~~l~~~G~~ 210 (752)
T PRK07232 153 DIPVFHD-DQ-----HGTAIISAAALLNALEL----------------VGKKIEDVKIVVSGAGAAAIACLNLLVALGAK 210 (752)
T ss_pred CCCeecc-cc-----chHHHHHHHHHHHHHHH----------------hCCChhhcEEEEECccHHHHHHHHHHHHcCCC
Confidence 5777664 22 44566777777777753 3678999999999999999999999999999
Q ss_pred --EEEEEcCCC-----C-CC-----------CcccChhhhcccCcEEEEeccCCccccc
Q 027226 178 --KIIATKRSW-----A-SH-----------SQVSCQSSGWHCKQVISIFNEKGFSSGE 217 (226)
Q Consensus 178 --~V~~~~r~~-----~-~~-----------~~~~~l~ell~~sD~v~l~~~~d~i~~~ 217 (226)
+++.+|+.. + .. ....+|.|+++.+|++.=+...+.+..+
T Consensus 211 ~~~i~~~D~~G~i~~~r~~~~~~~k~~~a~~~~~~~l~~~i~~~~v~iG~s~~g~~~~~ 269 (752)
T PRK07232 211 KENIIVCDSKGVIYKGRTEGMDEWKAAYAVDTDARTLAEAIEGADVFLGLSAAGVLTPE 269 (752)
T ss_pred cccEEEEcCCCeecCCCcccccHHHHHHhccCCCCCHHHHHcCCCEEEEcCCCCCCCHH
Confidence 799888753 1 11 1346789999999988877655554443
No 459
>PRK07577 short chain dehydrogenase; Provisional
Probab=91.20 E-value=0.4 Score=39.03 Aligned_cols=37 Identities=32% Similarity=0.493 Sum_probs=32.5
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCCCC
Q 027226 152 LGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWAS 188 (226)
Q Consensus 152 ~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~~~ 188 (226)
.+|++.|.|- |.||+.+|+.+..-|++|+..+|+...
T Consensus 2 ~~k~vlItG~s~~iG~~ia~~l~~~G~~v~~~~r~~~~ 39 (234)
T PRK07577 2 SSRTVLVTGATKGIGLALSLRLANLGHQVIGIARSAID 39 (234)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCccc
Confidence 4688999986 889999999999999999999987544
No 460
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=91.19 E-value=0.35 Score=39.53 Aligned_cols=37 Identities=30% Similarity=0.480 Sum_probs=32.6
Q ss_pred ccCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEE-cCCC
Q 027226 150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIAT-KRSW 186 (226)
Q Consensus 150 ~l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~-~r~~ 186 (226)
.+.+|++.|.|- |.||+++|+.+..-|++|+.. +|+.
T Consensus 2 ~~~~~~ilI~Gasg~iG~~la~~l~~~g~~v~~~~~r~~ 40 (247)
T PRK05565 2 KLMGKVAIVTGASGGIGRAIAELLAKEGAKVVIAYDINE 40 (247)
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCCH
Confidence 467899999985 999999999999889999988 8764
No 461
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=91.16 E-value=0.24 Score=39.37 Aligned_cols=32 Identities=28% Similarity=0.295 Sum_probs=28.6
Q ss_pred EEEEEcCChHHHHHHHHHccCCC-EEEEEcCCC
Q 027226 155 TVFILGFGNIGVELAKRLRPFGV-KIIATKRSW 186 (226)
Q Consensus 155 tvgIvG~G~IG~~vA~~l~afG~-~V~~~~r~~ 186 (226)
+|+|+|.|.+|..+|+.|...|. ++..+|...
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV 33 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 58999999999999999998899 499988864
No 462
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=91.16 E-value=0.93 Score=46.00 Aligned_cols=68 Identities=21% Similarity=0.149 Sum_probs=54.9
Q ss_pred CCCCCC-CCCccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC----C-------------------------
Q 027226 141 KKLGVP-TGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH----S------------------------- 190 (226)
Q Consensus 141 ~~w~~~-~~~~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~----~------------------------- 190 (226)
..|..+ +...-.|++|+|||-|.-|-+.|..|.-.|-.|..|.|+-+.. +
T Consensus 1772 egwm~p~pp~~rtg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll~ygipnmkldk~vv~rrv~ll~~egi~ 1851 (2142)
T KOG0399|consen 1772 EGWMKPCPPAFRTGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLMYGIPNMKLDKFVVQRRVDLLEQEGIR 1851 (2142)
T ss_pred hcCCccCCcccccCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCceeeecCCccchhHHHHHHHHHHHHhhCce
Confidence 347544 4567789999999999999999999999999999999986554 0
Q ss_pred --------cccChhhhcccCcEEEEe
Q 027226 191 --------QVSCQSSGWHCKQVISIF 208 (226)
Q Consensus 191 --------~~~~l~ell~~sD~v~l~ 208 (226)
+..++|++..+-|.+++.
T Consensus 1852 f~tn~eigk~vs~d~l~~~~daiv~a 1877 (2142)
T KOG0399|consen 1852 FVTNTEIGKHVSLDELKKENDAIVLA 1877 (2142)
T ss_pred EEeeccccccccHHHHhhccCeEEEE
Confidence 245678888888888776
No 463
>PRK06198 short chain dehydrogenase; Provisional
Probab=91.12 E-value=0.26 Score=40.92 Aligned_cols=38 Identities=21% Similarity=0.350 Sum_probs=33.6
Q ss_pred CccCCCEEEEEcC-ChHHHHHHHHHccCCCE-EEEEcCCC
Q 027226 149 ETLLGKTVFILGF-GNIGVELAKRLRPFGVK-IIATKRSW 186 (226)
Q Consensus 149 ~~l~gktvgIvG~-G~IG~~vA~~l~afG~~-V~~~~r~~ 186 (226)
..+.+|++.|.|- |.||+.+++.|...|.+ |+.++|+.
T Consensus 2 ~~~~~k~vlItGa~g~iG~~la~~l~~~G~~~V~~~~r~~ 41 (260)
T PRK06198 2 GRLDGKVALVTGGTQGLGAAIARAFAERGAAGLVICGRNA 41 (260)
T ss_pred CCCCCcEEEEeCCCchHHHHHHHHHHHCCCCeEEEEcCCH
Confidence 3578899999995 89999999999999999 99999864
No 464
>PRK06139 short chain dehydrogenase; Provisional
Probab=91.04 E-value=0.35 Score=42.39 Aligned_cols=38 Identities=26% Similarity=0.372 Sum_probs=34.3
Q ss_pred CccCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCC
Q 027226 149 ETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW 186 (226)
Q Consensus 149 ~~l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~ 186 (226)
..+.+|++.|.|. |.||+++|+.|..-|++|+..+|+.
T Consensus 3 ~~l~~k~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~~ 41 (330)
T PRK06139 3 GPLHGAVVVITGASSGIGQATAEAFARRGARLVLAARDE 41 (330)
T ss_pred cCCCCCEEEEcCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence 3578899999998 7999999999999999999999864
No 465
>PRK07370 enoyl-(acyl carrier protein) reductase; Validated
Probab=91.03 E-value=0.38 Score=40.23 Aligned_cols=35 Identities=26% Similarity=0.377 Sum_probs=30.6
Q ss_pred ccCCCEEEEEcC---ChHHHHHHHHHccCCCEEEEEcC
Q 027226 150 TLLGKTVFILGF---GNIGVELAKRLRPFGVKIIATKR 184 (226)
Q Consensus 150 ~l~gktvgIvG~---G~IG~~vA~~l~afG~~V~~~~r 184 (226)
.+.||++.|.|- +.||+++|+.+..-|++|+...+
T Consensus 3 ~l~~k~~lItGas~~~GIG~aia~~la~~G~~v~~~~~ 40 (258)
T PRK07370 3 DLTGKKALVTGIANNRSIAWGIAQQLHAAGAELGITYL 40 (258)
T ss_pred ccCCcEEEEeCCCCCCchHHHHHHHHHHCCCEEEEEec
Confidence 468999999997 48999999999999999977654
No 466
>PRK13814 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=91.00 E-value=2.5 Score=36.85 Aligned_cols=59 Identities=19% Similarity=0.111 Sum_probs=48.3
Q ss_pred ccCCCEEEEEcC---ChHHHHHHHHHccCCC-EEEEEcCCCCCC--------CcccChhhhcccCcEEEEe
Q 027226 150 TLLGKTVFILGF---GNIGVELAKRLRPFGV-KIIATKRSWASH--------SQVSCQSSGWHCKQVISIF 208 (226)
Q Consensus 150 ~l~gktvgIvG~---G~IG~~vA~~l~afG~-~V~~~~r~~~~~--------~~~~~l~ell~~sD~v~l~ 208 (226)
.+.|++|.++|= +++....+..+..||+ +|....|..-.. ....++++.++.+|++...
T Consensus 154 ~l~g~~va~vGD~~~~rv~~Sl~~~~a~~g~~~v~~~~P~~~~p~~~~~~~~~~~~d~~ea~~~aDvvy~~ 224 (310)
T PRK13814 154 HWNKLCVTIIGDIRHSRVANSLMDGLVTMGVPEIRLVGPSSLLPDKVGNDSIKKFTELKPSLLNSDVIVTL 224 (310)
T ss_pred CcCCcEEEEECCCCCCcHHHHHHHHHHHcCCCEEEEeCCcccCcCccccceEEEEcCHHHHhCCCCEEEEC
Confidence 378999999998 5999999999999999 999988853221 1136788999999999885
No 467
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=91.00 E-value=0.37 Score=40.61 Aligned_cols=34 Identities=15% Similarity=0.272 Sum_probs=28.9
Q ss_pred CCCEEEEEcCChHHHHHHHHHccCC-----------CEEEEEcCC
Q 027226 152 LGKTVFILGFGNIGVELAKRLRPFG-----------VKIIATKRS 185 (226)
Q Consensus 152 ~gktvgIvG~G~IG~~vA~~l~afG-----------~~V~~~~r~ 185 (226)
+..+|.|||.|.+|..+++.|...| .+++.+|..
T Consensus 10 ~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D 54 (244)
T TIGR03736 10 RPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDD 54 (244)
T ss_pred CCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCC
Confidence 5689999999999999999998653 388888874
No 468
>PTZ00434 cytosolic glyceraldehyde 3-phosphate dehydrogenase; Provisional
Probab=90.98 E-value=0.28 Score=43.51 Aligned_cols=31 Identities=26% Similarity=0.343 Sum_probs=25.1
Q ss_pred CEEEEEcCChHHHHHHHHHcc-----CCCEEEEEcC
Q 027226 154 KTVFILGFGNIGVELAKRLRP-----FGVKIIATKR 184 (226)
Q Consensus 154 ktvgIvG~G~IG~~vA~~l~a-----fG~~V~~~~r 184 (226)
.+|||=|||+|||.+.|.+-. -+++|.+.+-
T Consensus 4 ikVgINGFGRIGR~v~R~~~~~~~~~~~ievVAINd 39 (361)
T PTZ00434 4 IKVGINGFGRIGRMVFQAICDQGLIGTEIDVVAVVD 39 (361)
T ss_pred eEEEEECcChHHHHHHHHHHHcccCCCCeEEEEEeC
Confidence 489999999999999998653 2578888754
No 469
>PRK08303 short chain dehydrogenase; Provisional
Probab=90.92 E-value=0.44 Score=41.20 Aligned_cols=38 Identities=29% Similarity=0.374 Sum_probs=33.8
Q ss_pred CccCCCEEEEEcCC-hHHHHHHHHHccCCCEEEEEcCCC
Q 027226 149 ETLLGKTVFILGFG-NIGVELAKRLRPFGVKIIATKRSW 186 (226)
Q Consensus 149 ~~l~gktvgIvG~G-~IG~~vA~~l~afG~~V~~~~r~~ 186 (226)
..+.||++.|.|-+ .||+++|+.|..-|++|+..+|+.
T Consensus 4 ~~l~~k~~lITGgs~GIG~aia~~la~~G~~Vv~~~r~~ 42 (305)
T PRK08303 4 KPLRGKVALVAGATRGAGRGIAVELGAAGATVYVTGRST 42 (305)
T ss_pred cCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeccc
Confidence 45889999999985 699999999999999999998863
No 470
>PRK07814 short chain dehydrogenase; Provisional
Probab=90.91 E-value=0.39 Score=40.14 Aligned_cols=38 Identities=18% Similarity=0.359 Sum_probs=33.5
Q ss_pred ccCCCEEEEEcCC-hHHHHHHHHHccCCCEEEEEcCCCC
Q 027226 150 TLLGKTVFILGFG-NIGVELAKRLRPFGVKIIATKRSWA 187 (226)
Q Consensus 150 ~l~gktvgIvG~G-~IG~~vA~~l~afG~~V~~~~r~~~ 187 (226)
.+.++++.|.|-+ .||+++++.|..-|++|+..+|+..
T Consensus 7 ~~~~~~vlItGasggIG~~~a~~l~~~G~~Vi~~~r~~~ 45 (263)
T PRK07814 7 RLDDQVAVVTGAGRGLGAAIALAFAEAGADVLIAARTES 45 (263)
T ss_pred cCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 4779999999865 6999999999999999999999753
No 471
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=90.89 E-value=0.39 Score=39.93 Aligned_cols=37 Identities=27% Similarity=0.322 Sum_probs=32.8
Q ss_pred ccCCCEEEEEc-CChHHHHHHHHHccCCCEEEEEcCCC
Q 027226 150 TLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW 186 (226)
Q Consensus 150 ~l~gktvgIvG-~G~IG~~vA~~l~afG~~V~~~~r~~ 186 (226)
.+.||++.|.| -|.||+++|++|..-|++|+.++|+.
T Consensus 5 ~l~~k~~lItGas~gIG~aia~~l~~~G~~vv~~~~~~ 42 (251)
T PRK12481 5 DLNGKVAIITGCNTGLGQGMAIGLAKAGADIVGVGVAE 42 (251)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCch
Confidence 47899999998 67999999999999999999988753
No 472
>PRK12829 short chain dehydrogenase; Provisional
Probab=90.88 E-value=0.33 Score=40.21 Aligned_cols=38 Identities=24% Similarity=0.302 Sum_probs=33.9
Q ss_pred CccCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCC
Q 027226 149 ETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW 186 (226)
Q Consensus 149 ~~l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~ 186 (226)
..+.++++.|.|- |.||+.+++.|...|.+|+..+|+.
T Consensus 7 ~~~~~~~vlItGa~g~iG~~~a~~L~~~g~~V~~~~r~~ 45 (264)
T PRK12829 7 KPLDGLRVLVTGGASGIGRAIAEAFAEAGARVHVCDVSE 45 (264)
T ss_pred hccCCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCH
Confidence 3478899999985 9999999999999999999999864
No 473
>PRK06940 short chain dehydrogenase; Provisional
Probab=90.88 E-value=0.42 Score=40.46 Aligned_cols=33 Identities=27% Similarity=0.503 Sum_probs=29.8
Q ss_pred CCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCC
Q 027226 153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW 186 (226)
Q Consensus 153 gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~ 186 (226)
+|++.|-|.|.||+++|+.|. -|.+|+..+|+.
T Consensus 2 ~k~~lItGa~gIG~~la~~l~-~G~~Vv~~~r~~ 34 (275)
T PRK06940 2 KEVVVVIGAGGIGQAIARRVG-AGKKVLLADYNE 34 (275)
T ss_pred CCEEEEECCChHHHHHHHHHh-CCCEEEEEeCCH
Confidence 588999999999999999996 799999999864
No 474
>PRK06194 hypothetical protein; Provisional
Probab=90.88 E-value=0.39 Score=40.53 Aligned_cols=37 Identities=22% Similarity=0.386 Sum_probs=32.7
Q ss_pred ccCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCC
Q 027226 150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW 186 (226)
Q Consensus 150 ~l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~ 186 (226)
.+.++++.|.|- |.||+++|+.|..-|++|+.++|+.
T Consensus 3 ~~~~k~vlVtGasggIG~~la~~l~~~G~~V~~~~r~~ 40 (287)
T PRK06194 3 DFAGKVAVITGAASGFGLAFARIGAALGMKLVLADVQQ 40 (287)
T ss_pred CCCCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEeCCh
Confidence 467899999985 8999999999999999999999863
No 475
>PLN02730 enoyl-[acyl-carrier-protein] reductase
Probab=90.87 E-value=0.39 Score=41.71 Aligned_cols=34 Identities=35% Similarity=0.509 Sum_probs=31.4
Q ss_pred CCccCCCEEEEEcC---ChHHHHHHHHHccCCCEEEE
Q 027226 148 GETLLGKTVFILGF---GNIGVELAKRLRPFGVKIIA 181 (226)
Q Consensus 148 ~~~l~gktvgIvG~---G~IG~~vA~~l~afG~~V~~ 181 (226)
+.+|.||++.|-|- ..||.++|+.|..-|++|+.
T Consensus 4 ~~~l~gk~alITGa~~s~GIG~a~A~~la~~Ga~Vv~ 40 (303)
T PLN02730 4 PIDLRGKRAFIAGVADDNGYGWAIAKALAAAGAEILV 40 (303)
T ss_pred CcCCCCCEEEEeCCCCCCcHHHHHHHHHHHCCCEEEE
Confidence 35699999999999 78999999999999999988
No 476
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=90.86 E-value=0.38 Score=35.67 Aligned_cols=32 Identities=31% Similarity=0.414 Sum_probs=25.1
Q ss_pred EEEEEc-CChHHHHHHHHHc-cCCCEEEE-EcCCC
Q 027226 155 TVFILG-FGNIGVELAKRLR-PFGVKIIA-TKRSW 186 (226)
Q Consensus 155 tvgIvG-~G~IG~~vA~~l~-afG~~V~~-~~r~~ 186 (226)
+|+|+| .|.+|+++.++|. ...+++.. ++++.
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~ 35 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSR 35 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTT
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeecc
Confidence 699999 9999999999997 56677555 44443
No 477
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=90.84 E-value=0.3 Score=43.48 Aligned_cols=35 Identities=29% Similarity=0.445 Sum_probs=32.2
Q ss_pred CCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCC
Q 027226 152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW 186 (226)
Q Consensus 152 ~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~ 186 (226)
.|++|.|.|.|.||...++.++++|++|++.+++.
T Consensus 178 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~~~ 212 (375)
T PLN02178 178 SGKRLGVNGLGGLGHIAVKIGKAFGLRVTVISRSS 212 (375)
T ss_pred CCCEEEEEcccHHHHHHHHHHHHcCCeEEEEeCCh
Confidence 58999999999999999999999999999987653
No 478
>PRK14851 hypothetical protein; Provisional
Probab=90.83 E-value=0.18 Score=48.53 Aligned_cols=42 Identities=19% Similarity=0.197 Sum_probs=35.1
Q ss_pred CCCCCCCccCCCEEEEEcCChHHHHHHHHHccCCC-EEEEEcC
Q 027226 143 LGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKR 184 (226)
Q Consensus 143 w~~~~~~~l~gktvgIvG~G~IG~~vA~~l~afG~-~V~~~~r 184 (226)
|.......|++++|+|+|+|.+|..+|..|...|. +++.+|.
T Consensus 33 ~g~e~Q~kL~~~~VlIvG~GGlGs~va~~Lar~GVG~l~LvD~ 75 (679)
T PRK14851 33 FTPGEQERLAEAKVAIPGMGGVGGVHLITMVRTGIGRFHIADF 75 (679)
T ss_pred cCHHHHHHHhcCeEEEECcCHHHHHHHHHHHHhCCCeEEEEcC
Confidence 43334578999999999999999999999998888 6777775
No 479
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=90.83 E-value=0.3 Score=42.94 Aligned_cols=35 Identities=26% Similarity=0.323 Sum_probs=31.5
Q ss_pred CCCEEEEEcCChHHHHHHHHHccCCCE-EEEEcCCC
Q 027226 152 LGKTVFILGFGNIGVELAKRLRPFGVK-IIATKRSW 186 (226)
Q Consensus 152 ~gktvgIvG~G~IG~~vA~~l~afG~~-V~~~~r~~ 186 (226)
.|++|.|.|.|.||+.++..++++|++ |++.+++.
T Consensus 176 ~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~ 211 (358)
T TIGR03451 176 RGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDD 211 (358)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCH
Confidence 479999999999999999999999995 99887754
No 480
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=90.83 E-value=0.2 Score=47.88 Aligned_cols=35 Identities=29% Similarity=0.398 Sum_probs=32.0
Q ss_pred CCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCC
Q 027226 153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA 187 (226)
Q Consensus 153 gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~ 187 (226)
...|-|+|+|++|+.+|+.|+..|.+++..|.+++
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~ 434 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPD 434 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCCCEEEEECCHH
Confidence 46899999999999999999999999999998754
No 481
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=90.80 E-value=0.33 Score=44.89 Aligned_cols=34 Identities=12% Similarity=0.185 Sum_probs=29.5
Q ss_pred CEEEEEcCChHHHHHHHHHccC--CCEEEEEcCCCC
Q 027226 154 KTVFILGFGNIGVELAKRLRPF--GVKIIATKRSWA 187 (226)
Q Consensus 154 ktvgIvG~G~IG~~vA~~l~af--G~~V~~~~r~~~ 187 (226)
.+|+|+|+|.+|..+|..|... |.+|+++|....
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~ 37 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVP 37 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHH
Confidence 4799999999999999999854 799999998643
No 482
>PRK06182 short chain dehydrogenase; Validated
Probab=90.79 E-value=0.41 Score=40.18 Aligned_cols=35 Identities=26% Similarity=0.369 Sum_probs=31.6
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCC
Q 027226 152 LGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW 186 (226)
Q Consensus 152 ~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~ 186 (226)
.++++.|.|- |.||+++|+.|..-|++|++.+|+.
T Consensus 2 ~~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~ 37 (273)
T PRK06182 2 QKKVALVTGASSGIGKATARRLAAQGYTVYGAARRV 37 (273)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence 4789999995 8999999999999999999999864
No 483
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=90.74 E-value=0.41 Score=41.20 Aligned_cols=36 Identities=31% Similarity=0.452 Sum_probs=32.4
Q ss_pred cCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCC
Q 027226 151 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW 186 (226)
Q Consensus 151 l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~ 186 (226)
-.|.+|.|.|.|.+|+.+++.++.+|++|++.+++.
T Consensus 161 ~~~~~vlI~g~g~iG~~~~~~a~~~G~~v~~~~~~~ 196 (330)
T cd08245 161 RPGERVAVLGIGGLGHLAVQYARAMGFETVAITRSP 196 (330)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 446899999999999999999999999999988764
No 484
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=90.73 E-value=0.39 Score=42.41 Aligned_cols=35 Identities=26% Similarity=0.494 Sum_probs=31.9
Q ss_pred CCCEEEEEcCChHHHHHHHHHccCCC-EEEEEcCCC
Q 027226 152 LGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSW 186 (226)
Q Consensus 152 ~gktvgIvG~G~IG~~vA~~l~afG~-~V~~~~r~~ 186 (226)
.|.+|.|+|.|.||...++.++.+|+ +|++.+++.
T Consensus 186 ~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~ 221 (368)
T cd08300 186 PGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINP 221 (368)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCH
Confidence 47999999999999999999999999 699988764
No 485
>PRK06720 hypothetical protein; Provisional
Probab=90.71 E-value=0.45 Score=37.62 Aligned_cols=37 Identities=35% Similarity=0.387 Sum_probs=32.8
Q ss_pred ccCCCEEEEEcCCh-HHHHHHHHHccCCCEEEEEcCCC
Q 027226 150 TLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSW 186 (226)
Q Consensus 150 ~l~gktvgIvG~G~-IG~~vA~~l~afG~~V~~~~r~~ 186 (226)
.+.|+++.|.|-+. ||+++|+.+..-|++|+.++++.
T Consensus 13 ~l~gk~~lVTGa~~GIG~aia~~l~~~G~~V~l~~r~~ 50 (169)
T PRK06720 13 KLAGKVAIVTGGGIGIGRNTALLLAKQGAKVIVTDIDQ 50 (169)
T ss_pred ccCCCEEEEecCCChHHHHHHHHHHHCCCEEEEEECCH
Confidence 47899999999865 99999999999999999998764
No 486
>PRK10637 cysG siroheme synthase; Provisional
Probab=90.69 E-value=0.47 Score=43.63 Aligned_cols=40 Identities=15% Similarity=0.285 Sum_probs=36.2
Q ss_pred CccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCC
Q 027226 149 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS 188 (226)
Q Consensus 149 ~~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~ 188 (226)
-.|+||+|.|||-|.++.+=++.|..+|++|+.+++...+
T Consensus 8 ~~l~~~~vlvvGgG~vA~rk~~~ll~~ga~v~visp~~~~ 47 (457)
T PRK10637 8 CQLRDRDCLLVGGGDVAERKARLLLDAGARLTVNALAFIP 47 (457)
T ss_pred EEcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCCCH
Confidence 5799999999999999999999999999999999886544
No 487
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.66 E-value=0.43 Score=43.45 Aligned_cols=36 Identities=25% Similarity=0.491 Sum_probs=31.3
Q ss_pred cCC-CEEEEEcCChHHHHHHHHHccC--CCEEEEEcCCC
Q 027226 151 LLG-KTVFILGFGNIGVELAKRLRPF--GVKIIATKRSW 186 (226)
Q Consensus 151 l~g-ktvgIvG~G~IG~~vA~~l~af--G~~V~~~~r~~ 186 (226)
+.+ ++|.|+|+|.+|...++.|... |++|.++|...
T Consensus 4 ~~~~~~v~viG~G~sG~s~~~~l~~~~~~~~v~~~D~~~ 42 (438)
T PRK04663 4 WQGIKNVVVVGLGITGLSVVKHLRKYQPQLTVKVIDTRE 42 (438)
T ss_pred ccCCceEEEEeccHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence 455 7899999999999999999877 68999999754
No 488
>PLN02527 aspartate carbamoyltransferase
Probab=90.60 E-value=5.6 Score=34.62 Aligned_cols=59 Identities=20% Similarity=-0.019 Sum_probs=46.3
Q ss_pred ccCCCEEEEEcCC---hHHHHHHHHHccC-CCEEEEEcCCCCCC---C------------cccChhhhcccCcEEEEe
Q 027226 150 TLLGKTVFILGFG---NIGVELAKRLRPF-GVKIIATKRSWASH---S------------QVSCQSSGWHCKQVISIF 208 (226)
Q Consensus 150 ~l~gktvgIvG~G---~IG~~vA~~l~af-G~~V~~~~r~~~~~---~------------~~~~l~ell~~sD~v~l~ 208 (226)
.+.|++|+++|-+ +.....+..+..| |++|....|..-.. . -..++++.++.+|+|...
T Consensus 148 ~l~g~kva~vGD~~~~rv~~Sl~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvyt~ 225 (306)
T PLN02527 148 RLDGIKVGLVGDLANGRTVRSLAYLLAKYEDVKIYFVAPDVVKMKDDIKDYLTSKGVEWEESSDLMEVASKCDVLYQT 225 (306)
T ss_pred CcCCCEEEEECCCCCChhHHHHHHHHHhcCCCEEEEECCCccCCCHHHHHHHHHcCCEEEEEcCHHHHhCCCCEEEEC
Confidence 4789999999965 6888889888877 99999988854211 0 135778999999999885
No 489
>PLN02253 xanthoxin dehydrogenase
Probab=90.58 E-value=0.48 Score=39.89 Aligned_cols=39 Identities=23% Similarity=0.368 Sum_probs=34.0
Q ss_pred CCccCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCC
Q 027226 148 GETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW 186 (226)
Q Consensus 148 ~~~l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~ 186 (226)
...+.||++.|.|- |.||+++|+.|..-|++|+..+|+.
T Consensus 13 ~~~l~~k~~lItGas~gIG~~la~~l~~~G~~v~~~~~~~ 52 (280)
T PLN02253 13 SQRLLGKVALVTGGATGIGESIVRLFHKHGAKVCIVDLQD 52 (280)
T ss_pred ccccCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCH
Confidence 35678999999985 7899999999999999999998753
No 490
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=90.58 E-value=0.42 Score=40.93 Aligned_cols=36 Identities=28% Similarity=0.406 Sum_probs=32.5
Q ss_pred cCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCC
Q 027226 151 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW 186 (226)
Q Consensus 151 l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~ 186 (226)
..|.+|.|.|.|.+|+.+++.++.+|.+|++.+++.
T Consensus 154 ~~g~~vlV~g~g~vg~~~~q~a~~~G~~vi~~~~~~ 189 (319)
T cd08242 154 TPGDKVAVLGDGKLGLLIAQVLALTGPDVVLVGRHS 189 (319)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCH
Confidence 457999999999999999999999999999887753
No 491
>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated
Probab=90.56 E-value=0.4 Score=43.45 Aligned_cols=39 Identities=36% Similarity=0.501 Sum_probs=34.5
Q ss_pred CCccCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCC
Q 027226 148 GETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW 186 (226)
Q Consensus 148 ~~~l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~ 186 (226)
...++||++.|.|- |.||+++|+.+..-|++|+..+|+.
T Consensus 173 a~sl~gK~VLITGASgGIG~aLA~~La~~G~~Vi~l~r~~ 212 (406)
T PRK07424 173 ALSLKGKTVAVTGASGTLGQALLKELHQQGAKVVALTSNS 212 (406)
T ss_pred ccCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 34678999999987 8999999999999999999998764
No 492
>PLN02358 glyceraldehyde-3-phosphate dehydrogenase
Probab=90.55 E-value=0.35 Score=42.74 Aligned_cols=30 Identities=30% Similarity=0.407 Sum_probs=24.8
Q ss_pred CEEEEEcCChHHHHHHHHHcc-CCCEEEEEc
Q 027226 154 KTVFILGFGNIGVELAKRLRP-FGVKIIATK 183 (226)
Q Consensus 154 ktvgIvG~G~IG~~vA~~l~a-fG~~V~~~~ 183 (226)
.+|||+|+|+||+..++.+.. -+.++.++.
T Consensus 6 lrVaI~G~GrIGr~~~r~~~~~~~velvaI~ 36 (338)
T PLN02358 6 IRIGINGFGRIGRLVARVVLQRDDVELVAVN 36 (338)
T ss_pred eEEEEEeecHHHHHHHHHHhhCCCcEEEEEe
Confidence 499999999999999998764 367887754
No 493
>PRK06914 short chain dehydrogenase; Provisional
Probab=90.54 E-value=0.38 Score=40.43 Aligned_cols=36 Identities=25% Similarity=0.227 Sum_probs=31.6
Q ss_pred CCCEEEEEc-CChHHHHHHHHHccCCCEEEEEcCCCC
Q 027226 152 LGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWA 187 (226)
Q Consensus 152 ~gktvgIvG-~G~IG~~vA~~l~afG~~V~~~~r~~~ 187 (226)
.++++.|.| .|.||+++++.|..-|++|+.++|++.
T Consensus 2 ~~k~~lItGasg~iG~~la~~l~~~G~~V~~~~r~~~ 38 (280)
T PRK06914 2 NKKIAIVTGASSGFGLLTTLELAKKGYLVIATMRNPE 38 (280)
T ss_pred CCCEEEEECCCchHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 578899988 589999999999999999999988643
No 494
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=90.53 E-value=0.4 Score=45.25 Aligned_cols=38 Identities=26% Similarity=0.399 Sum_probs=33.1
Q ss_pred CccCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCC
Q 027226 149 ETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW 186 (226)
Q Consensus 149 ~~l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~ 186 (226)
..-.|+++.|.|. |.||+++++.|...|++|+++.|+.
T Consensus 76 ~~~~gKvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~ 114 (576)
T PLN03209 76 DTKDEDLAFVAGATGKVGSRTVRELLKLGFRVRAGVRSA 114 (576)
T ss_pred ccCCCCEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 3456799999996 9999999999999999999998853
No 495
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=90.51 E-value=0.59 Score=41.00 Aligned_cols=54 Identities=15% Similarity=0.089 Sum_probs=39.7
Q ss_pred EEEEEcC-ChHHHHHHHHHccCCC-------EEEEEcCCCCCC---------Ccc-----------cChhhhcccCcEEE
Q 027226 155 TVFILGF-GNIGVELAKRLRPFGV-------KIIATKRSWASH---------SQV-----------SCQSSGWHCKQVIS 206 (226)
Q Consensus 155 tvgIvG~-G~IG~~vA~~l~afG~-------~V~~~~r~~~~~---------~~~-----------~~l~ell~~sD~v~ 206 (226)
+|+|+|. |+||..+|..+...|. .+..+|+..... ... .+..+.++.+|+++
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~~a~g~~~Dl~d~~~~~~~~~~~~~~~~~~~~~aDiVV 80 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMKVLEGVVMELMDCAFPLLDGVVPTHDPAVAFTDVDVAI 80 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCcccccceeEeehhcccchhcCceeccCChHHHhCCCCEEE
Confidence 5899999 9999999999876554 588999854431 011 13357888899998
Q ss_pred Ee
Q 027226 207 IF 208 (226)
Q Consensus 207 l~ 208 (226)
+.
T Consensus 81 it 82 (324)
T TIGR01758 81 LV 82 (324)
T ss_pred Ec
Confidence 87
No 496
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=90.50 E-value=0.84 Score=43.74 Aligned_cols=47 Identities=19% Similarity=0.138 Sum_probs=38.1
Q ss_pred CCCCCCC-CCccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCC
Q 027226 141 KKLGVPT-GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA 187 (226)
Q Consensus 141 ~~w~~~~-~~~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~ 187 (226)
..|.... .....+++|.|||-|..|...|..|+..|.+|+.|++...
T Consensus 297 ~~~~~~~~~~~~~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~ 344 (639)
T PRK12809 297 MGWRPDVSKVVPRSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPE 344 (639)
T ss_pred hCCCCCCCcccCCCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCC
Confidence 3465432 2234699999999999999999999999999999998754
No 497
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=90.49 E-value=0.33 Score=42.26 Aligned_cols=34 Identities=24% Similarity=0.285 Sum_probs=31.1
Q ss_pred CCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCC
Q 027226 153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW 186 (226)
Q Consensus 153 gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~ 186 (226)
-++|||||.|-+|..+|..+..=|.+|..+|++.
T Consensus 3 i~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~~ 36 (307)
T COG1250 3 IKKVAVIGAGVMGAGIAAVFALAGYDVVLKDISP 36 (307)
T ss_pred ccEEEEEcccchhHHHHHHHhhcCCceEEEeCCH
Confidence 4799999999999999999999669999999983
No 498
>PRK07403 glyceraldehyde-3-phosphate dehydrogenase; Reviewed
Probab=90.39 E-value=0.34 Score=42.76 Aligned_cols=31 Identities=26% Similarity=0.374 Sum_probs=25.8
Q ss_pred CEEEEEcCChHHHHHHHHHc-c--CCCEEEEEcC
Q 027226 154 KTVFILGFGNIGVELAKRLR-P--FGVKIIATKR 184 (226)
Q Consensus 154 ktvgIvG~G~IG~~vA~~l~-a--fG~~V~~~~r 184 (226)
.+|||=|||+||+.+.|.+. . .+++|.+.+.
T Consensus 2 ~ki~INGfGRIGR~~~R~~~~~~~~~~~vvaind 35 (337)
T PRK07403 2 IRVAINGFGRIGRNFLRCWLGRENSQLELVAIND 35 (337)
T ss_pred eEEEEEccChHHHHHHHHHHhccCCCeEEEEecC
Confidence 38999999999999999854 2 4788888876
No 499
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=90.38 E-value=0.43 Score=41.42 Aligned_cols=36 Identities=22% Similarity=0.309 Sum_probs=32.2
Q ss_pred cCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCC
Q 027226 151 LLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW 186 (226)
Q Consensus 151 l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~ 186 (226)
-.|.+|.|.|. |.+|+.+++.++.+|++|++..++.
T Consensus 150 ~~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~~ 186 (338)
T cd08295 150 KKGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGSD 186 (338)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 35799999998 9999999999999999999987753
No 500
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=90.36 E-value=0.44 Score=41.88 Aligned_cols=36 Identities=19% Similarity=0.340 Sum_probs=32.3
Q ss_pred cCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCC
Q 027226 151 LLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW 186 (226)
Q Consensus 151 l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~ 186 (226)
-.|.+|.|.|. |.+|..+++.++.+|++|++.+++.
T Consensus 157 ~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~ 193 (348)
T PLN03154 157 KKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSS 193 (348)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCH
Confidence 35899999999 9999999999999999999987654
Done!