BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027227
(226 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9CA86|PEX2_ARATH Peroxisome biogenesis protein 2 OS=Arabidopsis thaliana GN=PEX2
PE=1 SV=1
Length = 333
Score = 350 bits (899), Expect = 4e-96, Method: Compositional matrix adjust.
Identities = 171/230 (74%), Positives = 198/230 (86%), Gaps = 8/230 (3%)
Query: 1 MNVLWKQEQ--------KVRTGLEGPGLTNAQKIWYCIATVGGQYLWARLQSFSAFRRWG 52
MN+ ++ E+ KVRTGLEGPGLT+ QKIWYC+A+VGGQYL++RLQSFSAFRRWG
Sbjct: 104 MNLRYRDERGVVAQHLGKVRTGLEGPGLTSPQKIWYCVASVGGQYLFSRLQSFSAFRRWG 163
Query: 53 DSEQRPLARRAWILIQRIEALYKAASFGNLLIFLYTGRYRNLIERALRARLVYGTPNMNR 112
DSEQRPLARR W L+QRIE +YKAASF NLL FLYTGRYRNLIE+AL+ARLVY +P+MNR
Sbjct: 164 DSEQRPLARRLWTLVQRIEGIYKAASFLNLLSFLYTGRYRNLIEKALKARLVYRSPHMNR 223
Query: 113 AVSFEYMNRQLVWNEFSEMLLLLLPLLNSSTVKGLFGPFSKDKSSSSEEDVTTCPICQAS 172
+VSFEYMNRQLVWNEFSEMLLLLLPLLNSS VK + PF+KDKSSS++ED TCPICQ
Sbjct: 224 SVSFEYMNRQLVWNEFSEMLLLLLPLLNSSAVKNILSPFAKDKSSSTKEDTVTCPICQVD 283
Query: 173 PTTPFLALPCQHRYCYYCLRTRCAASPSFRCSRCNEPVIAMQRHGVINPK 222
P PF+ALPCQHRYCYYC+RTRCA++ SFRC RCNEPV+A+QR GV + K
Sbjct: 284 PAIPFIALPCQHRYCYYCIRTRCASAASFRCLRCNEPVVAIQREGVSSGK 333
>sp|Q75JQ3|PEX2_DICDI Peroxisome biogenesis factor 2 OS=Dictyostelium discoideum GN=pex2
PE=3 SV=1
Length = 423
Score = 137 bits (344), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 71/246 (28%), Positives = 114/246 (46%), Gaps = 29/246 (11%)
Query: 2 NVLWKQEQK---VRTGLEGPGLTNAQKIWYCIATVGGQYLWARLQSFSAFRRWGDSEQRP 58
N+ ++ E+ +R + LT QK + +GG++LW R+ + W +
Sbjct: 176 NLTYRNEKAFDPIRGSDQLNKLTMRQKWLSGLINIGGEWLWTRINRYLINNNWSEHPPND 235
Query: 59 LARRAWILIQRIEALYKAASFGNLLIFLYTGRYRNLIERALRARLVYGTPNMNRAVSFEY 118
+ ++ W + E+ YKA + N L FL+ G+Y L+ R L RLVY P ++R +SFEY
Sbjct: 236 IRKKFWNFLNFAESAYKALALLNFLTFLFNGKYVTLVNRILHMRLVYAHPTLSRNISFEY 295
Query: 119 MNRQLVWNEFSEMLLLLLPLLNSSTVKGLFGPFSKDKS---------------------- 156
MNR LVW+ F+E +L ++PL+N +K S
Sbjct: 296 MNRLLVWHGFTEFILFIMPLINIDRIKSFLYRLLVKTSFGNSSGNNNNTASNPLQQLQKQ 355
Query: 157 ----SSSEEDVTTCPICQASPTTPFLALPCQHRYCYYCLRTRCAASPSFRCSRCNEPVIA 212
+ + CPIC P + + C H +CYYC++T C SF C RCN +
Sbjct: 356 QLLIQQQQMALAKCPICMNDPISMPYSADCGHLFCYYCIKTSCMIDSSFTCPRCNSLISN 415
Query: 213 MQRHGV 218
++R +
Sbjct: 416 IKRFSI 421
>sp|P51021|PEX2_PODAS Peroxisomal biogenesis factor 2 OS=Podospora anserina GN=PEX2 PE=3
SV=1
Length = 554
Score = 116 bits (291), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 76/232 (32%), Positives = 107/232 (46%), Gaps = 45/232 (19%)
Query: 24 QKIWYCIATVGGQYLWARLQSFSAFRRWGDSEQRPLARRAWILIQRIEALYKAASFGNLL 83
QK Y + TVGG+Y+W++ +++ + G E P +R + R+ L+ AASF + L
Sbjct: 208 QKGLYGLMTVGGRYMWSKWENWLREQDGGYDEPSPTVQRLSSMTDRLSTLHAAASFASFL 267
Query: 84 IFLYTGRYRNLIERALRARLVYGTPNMNRAVSFEYMNRQLVWNEFSEMLLLLLPLLN--- 140
+FL GRYR L++R LR RL T ++R VSFEY+NRQLVW+ F+E LL +LPL+
Sbjct: 268 VFLLQGRYRTLLDRVLRMRLAPPTSQVSREVSFEYLNRQLVWHAFTEFLLFVLPLVGINR 327
Query: 141 -----SSTVKGLFGPFSKDKSSSSEEDVT--------TCPIC------------------ 169
+ T + S +EE TC IC
Sbjct: 328 WRRWLARTWRKTKKIMSTTGGEGAEEKKGEFAFLPERTCAICYQDQNQATNENELMAAAT 387
Query: 170 ---------QASPTTPFLALPCQHRYCYYCLRTRC--AASPSFRCSRCNEPV 210
Q T P+ +PC YC+ CL TR + C RC E V
Sbjct: 388 SKTGVVGSAQTDVTNPYETIPCGCVYCFVCLATRIEREEGEGWNCLRCGELV 439
>sp|P24392|PEX2_RAT Peroxisome biogenesis factor 2 OS=Rattus norvegicus GN=Pex2 PE=2
SV=1
Length = 305
Score = 108 bits (269), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 69/222 (31%), Positives = 108/222 (48%), Gaps = 19/222 (8%)
Query: 1 MNVLWKQEQKVRTGLEGPGLTNAQKIWYCIATVGGQYLWARLQSFSAFRRWGDSEQRPLA 60
+N+ +K + + P + QK+ Y + T+GG++L R + FR R LA
Sbjct: 81 LNIQYKNDSSPNPVYQPP--SKNQKLLYAVCTIGGRWLEER--CYDLFR------NRHLA 130
Query: 61 R--RAWILIQRIEALYKAASFGNLLIFLYTGRYRNLIERALRARLVYGTPNMNRAVSFEY 118
+A + + L K N LIFL G++ L ER L V+ P R V FEY
Sbjct: 131 SFGKAKQCMNFVVGLLKLGELMNFLIFLQKGKFATLTERLLGIHSVFCKPQSMREVGFEY 190
Query: 119 MNRQLVWNEFSEMLLLLLPLLNSSTVKGLFGPFSKDKSSSSEEDVT------TCPICQAS 172
MNR+L+W+ F+E L+ LLPL+N +K + +S++ D T C +C
Sbjct: 191 MNRELLWHGFAEFLVFLLPLINIQKLKAKLSSWCIPLTSTAGSDSTLGSSGKECALCGEW 250
Query: 173 PTTPFLALPCQHRYCYYCLRTRCAASPSFRCSRCNEPVIAMQ 214
PT P + C+H +CYYC+++ F C +C V ++Q
Sbjct: 251 PTMPH-TIGCEHVFCYYCVKSSFLFDMYFTCPKCGTEVHSVQ 291
>sp|P55098|PEX2_MOUSE Peroxisome biogenesis factor 2 OS=Mus musculus GN=Pex2 PE=2 SV=1
Length = 305
Score = 106 bits (265), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 65/199 (32%), Positives = 98/199 (49%), Gaps = 17/199 (8%)
Query: 24 QKIWYCIATVGGQYLWARLQSFSAFRRWGDSEQRPLAR--RAWILIQRIEALYKAASFGN 81
QK+ Y + T+GG++L R + FR R LA +A + + L K N
Sbjct: 102 QKLLYAVCTIGGRWLEER--CYDLFRN------RHLASFGKAKQCMNFVVGLLKLGELMN 153
Query: 82 LLIFLYTGRYRNLIERALRARLVYGTPNMNRAVSFEYMNRQLVWNEFSEMLLLLLPLLNS 141
LIFL G++ L ER L V+ P R V FEYMNR+L+W+ F+E L+ LLPL+N
Sbjct: 154 FLIFLQKGKFATLTERLLGIHSVFCKPQNMREVGFEYMNRELLWHGFAEFLIFLLPLINI 213
Query: 142 STVKGLFGPFSKDKSSSSEEDVT------TCPICQASPTTPFLALPCQHRYCYYCLRTRC 195
+K + + ++ D T C +C PT P + C+H +CYYC+++
Sbjct: 214 QKLKAKLSSWCTLCTGAAGHDSTLGSSGKECALCGEWPTMPH-TIGCEHVFCYYCVKSSF 272
Query: 196 AASPSFRCSRCNEPVIAMQ 214
F C +C V ++Q
Sbjct: 273 LFDIYFTCPKCGTEVHSVQ 291
>sp|P28328|PEX2_HUMAN Peroxisome biogenesis factor 2 OS=Homo sapiens GN=PEX2 PE=1 SV=2
Length = 305
Score = 103 bits (257), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 63/202 (31%), Positives = 95/202 (47%), Gaps = 23/202 (11%)
Query: 24 QKIWYCIATVGGQYLWARLQSFSAFRR-----WGDSEQRPLARRAWILIQRIEALYKAAS 78
QKIWY + T+GG++L R + FR +G +Q + + L K
Sbjct: 102 QKIWYAVCTIGGRWLEER--CYDLFRNHHLASFGKVKQ---------CVNFVIGLLKLGG 150
Query: 79 FGNLLIFLYTGRYRNLIERALRARLVYGTPNMNRAVSFEYMNRQLVWNEFSEMLLLLLPL 138
N LIFL G++ L ER L V+ P V FEYMNR+L+W+ F+E L+ LLPL
Sbjct: 151 LINFLIFLQRGKFATLTERLLGIHSVFCKPQNICEVGFEYMNRELLWHGFAEFLIFLLPL 210
Query: 139 LNSSTVKGLFGPFSKDKSSSSEEDVT------TCPICQASPTTPFLALPCQHRYCYYCLR 192
+N +K + + + D T C +C PT P + C+H +CY+C +
Sbjct: 211 INVQKLKAKLSSWCIPLTGAPNSDNTLATSGKECALCGEWPTMPH-TIGCEHIFCYFCAK 269
Query: 193 TRCAASPSFRCSRCNEPVIAMQ 214
+ F C +C V ++Q
Sbjct: 270 SSFLFDVYFTCPKCGTEVHSLQ 291
>sp|Q06438|PEX2_CRIGR Peroxisome biogenesis factor 2 OS=Cricetulus griseus GN=PEX2 PE=1
SV=1
Length = 304
Score = 101 bits (251), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 66/222 (29%), Positives = 106/222 (47%), Gaps = 19/222 (8%)
Query: 1 MNVLWKQEQKVRTGLEGPGLTNAQKIWYCIATVGGQYLWARLQSFSAFRRWGDSEQRPLA 60
+N+ +K + + + P + QK+WY + T+GG++L R + FR R LA
Sbjct: 80 LNIQYKNDFSSNSRYQPP--SKNQKLWYAVCTIGGRWLEER--CYDLFR------NRHLA 129
Query: 61 RRAWI--LIQRIEALYKAASFGNLLIFLYTGRYRNLIERALRARLVYGTPNMNRAVSFEY 118
+ + + L K N LIFL G++ L ER L V+ P R V F+Y
Sbjct: 130 SFGKVKQCMNVMVGLLKLGELINFLIFLQKGKFATLTERLLGIHSVFCKPQNIREVGFDY 189
Query: 119 MNRQLVWNEFSEMLLLLLPLLNSSTVKGLFGPFSKDKSSSSEEDVTT------CPICQAS 172
MNR+L+W+ F+E L+ LLPL+N K + + ++ D C +C
Sbjct: 190 MNRELLWHGFAEFLIFLLPLINIQKFKAKLSSWCIPLTGAASSDSALASSGKECALCGEW 249
Query: 173 PTTPFLALPCQHRYCYYCLRTRCAASPSFRCSRCNEPVIAMQ 214
PT P + C+H +CYYC+++ F C +C V ++Q
Sbjct: 250 PTMPH-TIGCEHVFCYYCVKSSFLFDMYFTCPKCGIEVHSVQ 290
>sp|Q99155|PEX2_YARLI Peroxisomal biogenesis factor 2 OS=Yarrowia lipolytica (strain CLIB
122 / E 150) GN=PEX2 PE=3 SV=2
Length = 381
Score = 101 bits (251), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 76/237 (32%), Positives = 102/237 (43%), Gaps = 55/237 (23%)
Query: 24 QKIWYCIATVGGQYLWARLQSFSAFRRWGDSEQR-------PLARRAWILIQRIEALYKA 76
QK+ Y I VGG YLW++++ + R D AR A + LY A
Sbjct: 104 QKLGYGILVVGGGYLWSKIEGYLLARSEDDVATDGTSVRGASAARGALKVANFASLLYSA 163
Query: 77 ASFGNLLIFLYTGRYRNLIERALRARLVYGTPNMNRAVSFEYMNRQLVWNEFSEMLLLL- 135
A+ GN + FLYTGRY +I R LR RLV +R VS+E+ NRQLVWN F+E L+ +
Sbjct: 164 ATLGNFVAFLYTGRYATVIMRLLRIRLVPSQRTSSRQVSYEFQNRQLVWNAFTEFLIFIL 223
Query: 136 ---------------LPLLNSSTVKGLFGPFSKDKSSSSEEDVT-----TCPIC------ 169
L LN + V + +SE ++ TC IC
Sbjct: 224 PLLQLPKLKRRIERKLQSLNVTRVGNV--------EEASEGELAHLPQKTCAICFRDEEE 275
Query: 170 ----------QASPTTPFLALPCQHRYCYYCLRTRCA--ASPSFRCSRCNEPVIAMQ 214
T P+ A C H YCY CL T+ A + C RC + V M+
Sbjct: 276 QEGGGGASHYSTDVTNPYQA-DCGHVYCYVCLVTKLAQGDGDGWNCYRCAKQVQKMK 331
>sp|Q01964|PEX2_PICPA Peroxisomal biogenesis factor 2 OS=Komagataella pastoris GN=PEX2
PE=3 SV=1
Length = 461
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 77/193 (39%), Gaps = 52/193 (26%)
Query: 67 IQRIEALYKAASFGNLLIFLYTGRYRNLIERALRARLV------YGTPNMNRAVSFEYMN 120
I +E + S N + FL +G + +L R L R + +S+E+ N
Sbjct: 164 ISTLEKAHSVLSLVNFVTFLVSGSFPDLTTRILNIRFKPLVTTQVAFASNPETISYEFQN 223
Query: 121 RQLVWNEFSEMLLLLLPLLN-----SSTVKGLFGPFSKDKSSSSEEDVT--------TCP 167
RQLVWN +E ++ +LP L+ S V + G K S ++ED+ C
Sbjct: 224 RQLVWNTLTEFIVFILPALSVPKFTKSLVSSITGTSPK-SSQVTDEDLKVFSSLPERVCA 282
Query: 168 IC----QASP--------------TTPFLALPCQHRYCYYCLRTRC-----------AAS 198
IC Q S T P+ C H YCY C+ ++ +
Sbjct: 283 ICFQNSQNSDSGAQNDISLNDTLVTNPY-ETTCGHIYCYVCILSKLQIFKEEGKNLPKSD 341
Query: 199 PS--FRCSRCNEP 209
P+ + C RCNEP
Sbjct: 342 PNKYWHCLRCNEP 354
>sp|P32800|PEX2_YEAST Peroxisomal biogenesis factor 2 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=PEX2 PE=1 SV=1
Length = 271
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 36/77 (46%), Gaps = 6/77 (7%)
Query: 116 FEYMNRQLVWNEFSEMLLLLLPLLNSSTVKGLFGPFSKD-KSSSSEEDVTTCPICQASPT 174
EY NRQL+WN E+ L T +GL K +S S+ T CP C PT
Sbjct: 176 LEYQNRQLLWNALLELFSNTLL-----TKRGLLTFVKKPPRSRSTTTYKTVCPRCGGFPT 230
Query: 175 TPFLALPCQHRYCYYCL 191
P+ C+ YCY C+
Sbjct: 231 NPYQIACCRANYCYVCV 247
>sp|Q5PQN5|TRI55_RAT Tripartite motif-containing protein 55 OS=Rattus norvegicus
GN=Trim55 PE=2 SV=1
Length = 545
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 36/87 (41%), Gaps = 17/87 (19%)
Query: 148 FGPFSKDKSSSSE-EDVTTCPICQASPTTPFLALPCQHRYCYYCLR-------------- 192
+ FSK++ + E CPIC T P + LPCQH C C
Sbjct: 7 YKSFSKEQQTMDNLEKQLICPICLEMFTKPVVILPCQHNLCRKCASDIFQASNPYLPTRG 66
Query: 193 -TRCAASPSFRCSRCNEPVIAMQRHGV 218
T A+ FRC C V+ + RHGV
Sbjct: 67 GTTVASGGRFRCPSCRHEVV-LDRHGV 92
>sp|Q9BYV6|TRI55_HUMAN Tripartite motif-containing protein 55 OS=Homo sapiens GN=TRIM55
PE=1 SV=2
Length = 548
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 36/87 (41%), Gaps = 17/87 (19%)
Query: 148 FGPFSKDKSSSSE-EDVTTCPICQASPTTPFLALPCQHRYCYYCLR-------------- 192
+ FSK++ + E CPIC T P + LPCQH C C
Sbjct: 7 YKSFSKEQQTMDNLEKQLICPICLEMFTKPVVILPCQHNLCRKCASDIFQASNPYLPTRG 66
Query: 193 -TRCAASPSFRCSRCNEPVIAMQRHGV 218
T A+ FRC C V+ + RHGV
Sbjct: 67 GTTMASGGRFRCPSCRHEVV-LDRHGV 92
>sp|Q969Q1|TRI63_HUMAN E3 ubiquitin-protein ligase TRIM63 OS=Homo sapiens GN=TRIM63 PE=1
SV=1
Length = 353
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 29/68 (42%), Gaps = 16/68 (23%)
Query: 166 CPICQASPTTPFLALPCQHRYCYYCLRTRC-AASP--------------SFRCSRCNEPV 210
CPIC T P + LPCQH C C AA+P FRC C V
Sbjct: 23 CPICLEMFTKPVVILPCQHNLCRKCANDIFQAANPYWTSRGSSVSMSGGRFRCPTCRHEV 82
Query: 211 IAMQRHGV 218
I M RHGV
Sbjct: 83 I-MDRHGV 89
>sp|Q38HM4|TRI63_MOUSE E3 ubiquitin-protein ligase TRIM63 OS=Mus musculus GN=Trim63 PE=1
SV=1
Length = 350
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 29/68 (42%), Gaps = 16/68 (23%)
Query: 166 CPICQASPTTPFLALPCQHRYCYYCLRTRC-AASP--------------SFRCSRCNEPV 210
CPIC T P + LPCQH C C AA+P FRC C V
Sbjct: 23 CPICLEMFTKPVVILPCQHNLCRKCANDIFQAANPYWTNRGGSVSMSGGRFRCPSCRHEV 82
Query: 211 IAMQRHGV 218
I M RHGV
Sbjct: 83 I-MDRHGV 89
>sp|Q91Z63|TRI63_RAT E3 ubiquitin-protein ligase TRIM63 OS=Rattus norvegicus GN=Trim63
PE=2 SV=1
Length = 351
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 29/68 (42%), Gaps = 16/68 (23%)
Query: 166 CPICQASPTTPFLALPCQHRYCYYCLRTRC-AASP--------------SFRCSRCNEPV 210
CPIC T P + LPCQH C C AA+P FRC C V
Sbjct: 23 CPICLEMFTKPVVILPCQHNLCRKCANDIFQAANPYWTNRGGSVSMSGGRFRCPSCRHEV 82
Query: 211 IAMQRHGV 218
I M RHGV
Sbjct: 83 I-MDRHGV 89
>sp|Q58D15|TRI54_BOVIN Tripartite motif-containing protein 54 OS=Bos taurus GN=TRIM54 PE=2
SV=1
Length = 366
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 33/87 (37%), Gaps = 17/87 (19%)
Query: 148 FGPFSKDKSSSSE-EDVTTCPICQASPTTPFLALPCQHRYCYYCLR-------------- 192
F P D S E CPIC + P + LPCQH C C
Sbjct: 7 FKPLLGDAHSMDNLEKQLICPICLEMFSKPVVILPCQHNLCRKCANDVFQASNPLWQSRS 66
Query: 193 -TRCAASPSFRCSRCNEPVIAMQRHGV 218
T ++ FRC C V+ + RHGV
Sbjct: 67 STTVSSGGRFRCPSCRHEVV-LDRHGV 92
>sp|Q5REJ9|TRI54_PONAB Tripartite motif-containing protein 54 OS=Pongo abelii GN=TRIM54
PE=2 SV=1
Length = 358
Score = 41.6 bits (96), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 33/87 (37%), Gaps = 17/87 (19%)
Query: 148 FGPFSKDKSSSSE-EDVTTCPICQASPTTPFLALPCQHRYCYYCLR-------------- 192
F P D S E CPIC + P + LPCQH C C
Sbjct: 7 FKPLLGDAHSMDNLEKQLICPICLEMFSKPVVILPCQHNLCRKCANDVFQASNPLWQSRG 66
Query: 193 -TRCAASPSFRCSRCNEPVIAMQRHGV 218
T ++ FRC C V+ + RHGV
Sbjct: 67 STTVSSGGRFRCPSCRHEVV-LDRHGV 92
>sp|Q9BYV2|TRI54_HUMAN Tripartite motif-containing protein 54 OS=Homo sapiens GN=TRIM54
PE=1 SV=3
Length = 358
Score = 41.6 bits (96), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 33/87 (37%), Gaps = 17/87 (19%)
Query: 148 FGPFSKDKSSSSE-EDVTTCPICQASPTTPFLALPCQHRYCYYCLR-------------- 192
F P D S E CPIC + P + LPCQH C C
Sbjct: 7 FKPLLGDAHSMDNLEKQLICPICLEMFSKPVVILPCQHNLCRKCANDVFQASNPLWQSRG 66
Query: 193 -TRCAASPSFRCSRCNEPVIAMQRHGV 218
T ++ FRC C V+ + RHGV
Sbjct: 67 STTVSSGGRFRCPSCRHEVV-LDRHGV 92
>sp|Q9ERP3|TRI54_MOUSE Tripartite motif-containing protein 54 OS=Mus musculus GN=Trim54
PE=1 SV=1
Length = 366
Score = 41.2 bits (95), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 33/87 (37%), Gaps = 17/87 (19%)
Query: 148 FGPFSKDKSSSSE-EDVTTCPICQASPTTPFLALPCQHRYCYYCLR-------------- 192
F P D + E CPIC + P + LPCQH C C
Sbjct: 7 FKPLLGDAHNMDNLEKQLICPICLEMFSKPVVILPCQHNLCRKCANDVFQASNPLWQSRG 66
Query: 193 -TRCAASPSFRCSRCNEPVIAMQRHGV 218
T ++ FRC C V+ + RHGV
Sbjct: 67 STTVSSGGRFRCPSCRHEVV-LDRHGV 92
>sp|Q5XIH6|TRI54_RAT Tripartite motif-containing protein 54 OS=Rattus norvegicus
GN=Trim54 PE=2 SV=1
Length = 364
Score = 41.2 bits (95), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 33/87 (37%), Gaps = 17/87 (19%)
Query: 148 FGPFSKDKSSSSE-EDVTTCPICQASPTTPFLALPCQHRYCYYCLR-------------- 192
F P D + E CPIC + P + LPCQH C C
Sbjct: 7 FKPLLGDAHNMDNLEKQLICPICLEMFSKPVVILPCQHNLCRKCANDVFQASNPLWQSRG 66
Query: 193 -TRCAASPSFRCSRCNEPVIAMQRHGV 218
T ++ FRC C V+ + RHGV
Sbjct: 67 STTVSSGGRFRCPSCRHEVV-LDRHGV 92
>sp|Q8TEC5|SH3R2_HUMAN Putative E3 ubiquitin-protein ligase SH3RF2 OS=Homo sapiens
GN=SH3RF2 PE=1 SV=3
Length = 729
Score = 39.7 bits (91), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 21/47 (44%)
Query: 166 CPICQASPTTPFLALPCQHRYCYYCLRTRCAASPSFRCSRCNEPVIA 212
CP+C LPCQH +C CL+ A RC C PV +
Sbjct: 12 CPVCFEKLDVTAKVLPCQHTFCKPCLQRVFKAHKELRCPECRTPVFS 58
>sp|Q6NRD3|SH3R1_XENLA E3 ubiquitin-protein ligase SH3RF1 OS=Xenopus laevis GN=sh3rf1 PE=2
SV=1
Length = 826
Score = 39.3 bits (90), Expect = 0.021, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 20/45 (44%)
Query: 162 DVTTCPICQASPTTPFLALPCQHRYCYYCLRTRCAASPSFRCSRC 206
D+ CP+C LPCQH +C CL ++ RC C
Sbjct: 8 DLLECPVCLERLDASAKVLPCQHTFCKRCLLGIVSSRKELRCPEC 52
>sp|Q86T96|RN180_HUMAN E3 ubiquitin-protein ligase RNF180 OS=Homo sapiens GN=RNF180 PE=2
SV=2
Length = 592
Score = 39.3 bits (90), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 24/49 (48%)
Query: 152 SKDKSSSSEEDVTTCPICQASPTTPFLALPCQHRYCYYCLRTRCAASPS 200
+D + E+D C +C P++ PC H +C CLRT +PS
Sbjct: 418 DEDNEYAEEKDSYICAVCLDVYFNPYMCYPCHHIFCEPCLRTLAKDNPS 466
>sp|Q5RAK3|RN180_PONAB E3 ubiquitin-protein ligase RNF180 OS=Pongo abelii GN=RNF180 PE=2
SV=1
Length = 592
Score = 39.3 bits (90), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 25/49 (51%)
Query: 152 SKDKSSSSEEDVTTCPICQASPTTPFLALPCQHRYCYYCLRTRCAASPS 200
+D + E+D C +C P++ PC+H +C CLRT +PS
Sbjct: 418 DEDNEYAEEKDSYICAVCLDVYFNPYMCYPCRHIFCEPCLRTLAKDNPS 466
>sp|Q03601|NHL1_CAEEL RING finger protein nhl-1 OS=Caenorhabditis elegans GN=nhl-1 PE=1
SV=2
Length = 974
Score = 38.9 bits (89), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
Query: 161 EDVTTCPICQASPTTPFLALPCQHRYCYYCLRTRCAAS--PSFRCSRC 206
E + TCPIC P L LPCQH +CY CL + CA + + +C C
Sbjct: 38 EQLLTCPICLDRYKQPKL-LPCQHTFCYPCLES-CADTLHRNLKCPEC 83
>sp|Q28E95|SH3R1_XENTR E3 ubiquitin-protein ligase SH3RF1 OS=Xenopus tropicalis GN=sh3rf1
PE=2 SV=1
Length = 861
Score = 38.9 bits (89), Expect = 0.028, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 20/45 (44%)
Query: 162 DVTTCPICQASPTTPFLALPCQHRYCYYCLRTRCAASPSFRCSRC 206
D+ CP+C LPCQH +C CL ++ RC C
Sbjct: 8 DLLECPVCLERLDASAKVLPCQHTFCKRCLLGIVSSRNELRCPEC 52
>sp|Q5RBR0|SH3R1_PONAB E3 ubiquitin-protein ligase SH3RF1 OS=Pongo abelii GN=SH3RF1 PE=2
SV=1
Length = 888
Score = 38.5 bits (88), Expect = 0.038, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 19/45 (42%)
Query: 162 DVTTCPICQASPTTPFLALPCQHRYCYYCLRTRCAASPSFRCSRC 206
D+ CP+C LPCQH +C CL + RC C
Sbjct: 8 DLLECPVCLERLDASAKVLPCQHTFCKRCLLGIVGSRNELRCPEC 52
>sp|Q71F54|SH3R1_RAT E3 ubiquitin-protein ligase SH3RF1 OS=Rattus norvegicus GN=Sh3rf1
PE=1 SV=1
Length = 894
Score = 38.5 bits (88), Expect = 0.040, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 19/45 (42%)
Query: 162 DVTTCPICQASPTTPFLALPCQHRYCYYCLRTRCAASPSFRCSRC 206
D+ CP+C LPCQH +C CL + RC C
Sbjct: 8 DLLECPVCLERLDASAKVLPCQHTFCKRCLLGIVGSRNELRCPEC 52
>sp|Q69ZI1|SH3R1_MOUSE E3 ubiquitin-protein ligase SH3RF1 OS=Mus musculus GN=Sh3rf1 PE=1
SV=2
Length = 892
Score = 38.5 bits (88), Expect = 0.040, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 19/45 (42%)
Query: 162 DVTTCPICQASPTTPFLALPCQHRYCYYCLRTRCAASPSFRCSRC 206
D+ CP+C LPCQH +C CL + RC C
Sbjct: 8 DLLECPVCLERLDASAKVLPCQHTFCKRCLLGIVGSRNELRCPEC 52
>sp|Q7Z6J0|SH3R1_HUMAN E3 ubiquitin-protein ligase SH3RF1 OS=Homo sapiens GN=SH3RF1 PE=1
SV=2
Length = 888
Score = 38.5 bits (88), Expect = 0.041, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 19/45 (42%)
Query: 162 DVTTCPICQASPTTPFLALPCQHRYCYYCLRTRCAASPSFRCSRC 206
D+ CP+C LPCQH +C CL + RC C
Sbjct: 8 DLLECPVCLERLDASAKVLPCQHTFCKRCLLGIVGSRNELRCPEC 52
>sp|A5D8S5|SH3R1_DANRE E3 ubiquitin-protein ligase SH3RF1 OS=Danio rerio GN=sh3rf1 PE=2
SV=2
Length = 867
Score = 38.5 bits (88), Expect = 0.043, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 19/45 (42%)
Query: 162 DVTTCPICQASPTTPFLALPCQHRYCYYCLRTRCAASPSFRCSRC 206
D+ CP+C LPCQH +C CL + RC C
Sbjct: 8 DLLECPVCLERLDATAKVLPCQHTFCRRCLLGIVGSRGELRCPEC 52
>sp|P36113|YKZ7_YEAST RING finger protein YKR017C OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=YKR017C PE=1 SV=1
Length = 551
Score = 38.1 bits (87), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 48/109 (44%), Gaps = 6/109 (5%)
Query: 89 GRYRNLIERALRARLVYGTPNMNRAVSFEYMN----RQL-VWNEFSEMLLLLLPLLNSST 143
G + +++R + ++ P+ + + ++ + R L VW E + LL+ L L ++
Sbjct: 98 GIFERMLQRVDHLQPIFAIPSADILILLQHYDWNEERLLEVWTEKMDELLVELGLSTTAN 157
Query: 144 VKGLFGPFSKDKSSSSEEDVTTCPICQASPTTPFLALPCQHRYCYYCLR 192
+K S + + D T C IC T AL C H YC C R
Sbjct: 158 IKKDNDYNSHFREVEFKNDFT-CIICCDKKDTETFALECGHEYCINCYR 205
>sp|P84445|ICP0_EHV1V E3 ubiquitin-protein ligase ICP0 OS=Equine herpesvirus 1 (strain
V592) GN=ICP0 PE=3 SV=1
Length = 532
Score = 38.1 bits (87), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 166 CPICQASPTTPFLALPCQHRYCYYCLRTRCAASPSFRCSRCNEPV 210
CPIC P+ +ALPC H +CY C+ +P+ C C PV
Sbjct: 8 CPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPT--CPLCKVPV 50
>sp|P28990|ICP0_EHV1B E3 ubiquitin-protein ligase ICP0 OS=Equine herpesvirus 1 (strain
Ab4p) GN=63 PE=1 SV=1
Length = 532
Score = 38.1 bits (87), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 166 CPICQASPTTPFLALPCQHRYCYYCLRTRCAASPSFRCSRCNEPV 210
CPIC P+ +ALPC H +CY C+ +P+ C C PV
Sbjct: 8 CPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPT--CPLCKVPV 50
>sp|A5D7F8|SH3R1_BOVIN E3 ubiquitin-protein ligase SH3RF1 OS=Bos taurus GN=SH3RF1 PE=2
SV=1
Length = 840
Score = 38.1 bits (87), Expect = 0.052, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 19/45 (42%)
Query: 162 DVTTCPICQASPTTPFLALPCQHRYCYYCLRTRCAASPSFRCSRC 206
D+ CP+C LPCQH +C CL + RC C
Sbjct: 8 DLLECPVCLERLDASAKVLPCQHTFCKRCLLGIVGSRNELRCPEC 52
>sp|Q9VRP9|BRE1_DROME E3 ubiquitin-protein ligase Bre1 OS=Drosophila melanogaster GN=Bre1
PE=1 SV=2
Length = 1044
Score = 37.7 bits (86), Expect = 0.068, Method: Composition-based stats.
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Query: 161 EDVTTCPICQASPTTPFLALPCQHRYCYYCLRTRCAASPSFRCSRCN 207
++ TCP C+ L+ C H +CY CLRTR +C +CN
Sbjct: 986 KETLTCPSCKVKRKDAVLS-KCFHVFCYDCLRTRYETRQR-KCPKCN 1030
>sp|Q02084|A33_PLEWA Zinc-binding protein A33 OS=Pleurodeles waltl PE=1 SV=2
Length = 625
Score = 37.0 bits (84), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 165 TCPICQASPTTPFLALPCQHRYCYYCLRTRCAASPSFRCSRCNE 208
TCP+C++ P + L C H +C +C+ ++ +F C C E
Sbjct: 162 TCPLCRSLFKEPVI-LECGHNFCKHCIDKSWESASAFSCPECKE 204
>sp|Q9SIZ8|RKP_ARATH E3 ubiquitin-protein ligase RKP OS=Arabidopsis thaliana GN=RKP PE=2
SV=2
Length = 1280
Score = 36.6 bits (83), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
Query: 152 SKDKSSSSEEDVTTCPICQASPTTPFLALPCQHRYCYYCLRTRCAASPSFRCSRCNEPVI 211
S +K ++ ED TC IC A +A PC HR CY C+ RC CN VI
Sbjct: 1204 SFNKDTTDIED-NTCCICYAGEANAMIA-PCSHRSCYGCITRHLLNCQ--RCFFCNATVI 1259
Query: 212 AMQR 215
+ R
Sbjct: 1260 DVIR 1263
>sp|Q8C120|SH3R3_MOUSE SH3 domain-containing RING finger protein 3 OS=Mus musculus
GN=Sh3rf3 PE=2 SV=2
Length = 878
Score = 36.6 bits (83), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 24/54 (44%)
Query: 153 KDKSSSSEEDVTTCPICQASPTTPFLALPCQHRYCYYCLRTRCAASPSFRCSRC 206
+D SS D+ C +C T LPCQH +C CL + + RC C
Sbjct: 39 EDMDESSLLDLLECSVCLERLDTTAKVLPCQHTFCRRCLESIVCSRHELRCPEC 92
>sp|Q8TQQ2|COFC_METAC 2-phospho-L-lactate guanylyltransferase OS=Methanosarcina
acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 /
C2A) GN=cofC PE=3 SV=1
Length = 208
Score = 36.2 bits (82), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 49/105 (46%), Gaps = 17/105 (16%)
Query: 95 IERALRARLVYGTPNMNRAVSFEYMNRQLVWNEFSEMLLLL-LPLLNSSTVKGLFGPFSK 153
+E +AR++ ++N A +NR L +E ++++ LPLL + +KG+
Sbjct: 58 LEDMTKARVLLDEDDLNEA-----LNRYLAGSEEPVLIVMADLPLLAPAHIKGI------ 106
Query: 154 DKSSSSEEDVTTCPICQASPTTPFLALPCQHRYCYY--CLRTRCA 196
SS+E+DV P F+ P ++R YY T C+
Sbjct: 107 ---SSTEKDVCIVPGKGGGTNALFIKNPSRYRVKYYGSSFLTHCS 148
>sp|Q9WUH5|TRI10_MOUSE Tripartite motif-containing protein 10 OS=Mus musculus GN=Trim10
PE=2 SV=2
Length = 489
Score = 36.2 bits (82), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 26/59 (44%), Gaps = 6/59 (10%)
Query: 156 SSSSEEDVTTCPICQASPTTPFLALPCQHRYCYYCLRTRC-----AASPSFRCSRCNEP 209
S +S D CPICQ + P + + C H +C CL C + S C C EP
Sbjct: 6 SVTSLADEVNCPICQGTLREP-VTIDCGHNFCRGCLTRYCEIPGPESEESLSCPLCKEP 63
>sp|P29129|ICP0_SUHVF E3 ubiquitin-protein ligase ICP0 OS=Suid herpesvirus 1 (strain
Indiana-Funkhauser / Becker) GN=EP0 PE=2 SV=1
Length = 410
Score = 35.8 bits (81), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Query: 163 VTTCPICQASPTTPFLALPCQHRYCYYCLRTRCAASPSFRCSRCNEPVIAMQRH 216
V CPIC T LPC H++C C++ S + C CN V ++ H
Sbjct: 43 VMDCPICLDVAATEAQTLPCMHKFCLDCIQRWTLTSTA--CPLCNARVTSILHH 94
>sp|Q9FIY7|SM3L3_ARATH Putative SWI/SNF-related matrix-associated actin-dependent regulator
of chromatin subfamily A member 3-like 3 OS=Arabidopsis
thaliana GN=At5g43530 PE=3 SV=1
Length = 1277
Score = 35.8 bits (81), Expect = 0.25, Method: Composition-based stats.
Identities = 17/41 (41%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 166 CPICQASPTTPFLALPCQHRYCYYCLRTRCAASPSFRCSRC 206
CPIC S P L PC HR C CL T + C C
Sbjct: 1040 CPICLESADDPVLT-PCAHRMCRECLLTSWRSPSCGLCPIC 1079
>sp|F6ZQ54|TRI13_XENTR Tripartite motif containing 13 OS=Xenopus tropicalis GN=trim13 PE=3
SV=1
Length = 408
Score = 35.4 bits (80), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 32/67 (47%), Gaps = 10/67 (14%)
Query: 160 EEDVTTCPICQASPTTPFLALPCQHRYCYYCL--------RTRCAASPSFRCSRCNEPVI 211
EED+T CPIC + P + LPC H +C CL RT SF+C C +
Sbjct: 5 EEDLT-CPICCSLFDDPRV-LPCSHNFCKKCLDGVLEENSRTMQWRPSSFKCPTCRKETP 62
Query: 212 AMQRHGV 218
M +G+
Sbjct: 63 TMGVNGL 69
>sp|Q8TEJ3|SH3R3_HUMAN SH3 domain-containing RING finger protein 3 OS=Homo sapiens
GN=SH3RF3 PE=1 SV=2
Length = 882
Score = 35.4 bits (80), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 24/54 (44%)
Query: 153 KDKSSSSEEDVTTCPICQASPTTPFLALPCQHRYCYYCLRTRCAASPSFRCSRC 206
+D SS D+ C +C T LPCQH +C CL + + RC C
Sbjct: 44 EDMDESSLLDLLECSVCLERLDTTAKVLPCQHTFCRRCLESIVCSRHELRCPEC 97
>sp|O15344|TRI18_HUMAN Midline-1 OS=Homo sapiens GN=MID1 PE=1 SV=1
Length = 667
Score = 35.4 bits (80), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 28/65 (43%), Gaps = 11/65 (16%)
Query: 161 EDVTTCPICQASPTTPFLALPCQHRYCYYC----LRTRCAASPS------FRCSRCNEPV 210
E TCPIC P L LPC H C+ C L + CA + S F+C C +
Sbjct: 5 ESELTCPICLELFEDPLL-LPCAHSLCFNCAHRILVSHCATNESVESITAFQCPTCRHVI 63
Query: 211 IAMQR 215
QR
Sbjct: 64 TLSQR 68
>sp|Q8BZT2|SH3R2_MOUSE Putative E3 ubiquitin-protein ligase SH3RF2 OS=Mus musculus
GN=Sh3rf2 PE=1 SV=2
Length = 735
Score = 35.0 bits (79), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 18/41 (43%)
Query: 166 CPICQASPTTPFLALPCQHRYCYYCLRTRCAASPSFRCSRC 206
CP+C LPCQH +C CL+ A RC C
Sbjct: 12 CPVCFEKLDVTAKVLPCQHTFCKPCLQRIFKAHKELRCPEC 52
>sp|Q498M5|SH3R2_RAT Putative E3 ubiquitin-protein ligase SH3RF2 OS=Rattus norvegicus
GN=Sh3rf2 PE=2 SV=1
Length = 735
Score = 35.0 bits (79), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 18/41 (43%)
Query: 166 CPICQASPTTPFLALPCQHRYCYYCLRTRCAASPSFRCSRC 206
CP+C LPCQH +C CL+ A RC C
Sbjct: 12 CPVCFEKLDVTAKVLPCQHTFCKPCLQRIFKAHKELRCPEC 52
>sp|Q9SYU4|PEX10_ARATH Peroxisome biogenesis factor 10 OS=Arabidopsis thaliana GN=PEX10
PE=1 SV=1
Length = 381
Score = 34.7 bits (78), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 44/198 (22%), Positives = 73/198 (36%), Gaps = 50/198 (25%)
Query: 48 FRRWGDSEQR-----PLARRAWILIQRIEALYKAASFGNLLIFLYTGRYRNLIERALRAR 102
R W + QR P+AR L+ R NL++F + G Y ++ +RA R
Sbjct: 184 MRSWHRAIQRWPVVLPVAREVLQLVLR----------ANLMLFYFEGFYYHISKRASGVR 233
Query: 103 LVYGTPNMNRAVSFEYMN---------------------------RQLVWNEFSEMLLLL 135
V+ +N+ ++ + +Q +
Sbjct: 234 YVFIGKQLNQRPRYQILGVFLLIQLCILAAEGLRRSNLSSITSSIQQASIGSYQTSGGRG 293
Query: 136 LPLLNSS----TVKGLFGPFSKDKSSSSEEDVTTCPICQASPTTPFLALPCQHRYCYYCL 191
LP+LN T + G +S S+S+E V C +C ++ P A PC H +C+ C+
Sbjct: 294 LPVLNEEGNLITSEAEKGNWSTSDSTSTEA-VGKCTLCLSTRQHP-TATPCGHVFCWSCI 351
Query: 192 RTRCAASPSFRCSRCNEP 209
C + C C P
Sbjct: 352 MEWC--NEKQECPLCRTP 367
>sp|Q8IS11|GEFO_DICDI Ras guanine nucleotide exchange factor O OS=Dictyostelium
discoideum GN=gefO PE=2 SV=1
Length = 944
Score = 34.7 bits (78), Expect = 0.58, Method: Composition-based stats.
Identities = 14/39 (35%), Positives = 18/39 (46%)
Query: 165 TCPICQASPTTPFLALPCQHRYCYYCLRTRCAASPSFRC 203
TC ICQ P +PC H +C CL T + +C
Sbjct: 15 TCGICQNLFKDPNTLIPCGHAFCLDCLTTNASIKNCIQC 53
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.325 0.136 0.436
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 80,737,990
Number of Sequences: 539616
Number of extensions: 3000270
Number of successful extensions: 9031
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 170
Number of HSP's that attempted gapping in prelim test: 8906
Number of HSP's gapped (non-prelim): 265
length of query: 226
length of database: 191,569,459
effective HSP length: 113
effective length of query: 113
effective length of database: 130,592,851
effective search space: 14756992163
effective search space used: 14756992163
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 59 (27.3 bits)