Query 027227
Match_columns 226
No_of_seqs 249 out of 1500
Neff 8.0
Searched_HMMs 29240
Date Mon Mar 25 10:56:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027227.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027227hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2yur_A Retinoblastoma-binding 99.4 4.2E-13 1.4E-17 91.8 7.0 56 158-214 10-66 (74)
2 2djb_A Polycomb group ring fin 99.4 1.9E-12 6.4E-17 88.0 7.3 56 158-216 10-66 (72)
3 3ztg_A E3 ubiquitin-protein li 99.3 9.1E-13 3.1E-17 93.7 5.7 52 159-211 9-61 (92)
4 2ecy_A TNF receptor-associated 99.3 1.9E-12 6.6E-17 86.4 6.0 52 159-212 11-62 (66)
5 2ysl_A Tripartite motif-contai 99.3 3.5E-12 1.2E-16 86.6 5.8 53 158-211 15-68 (73)
6 1t1h_A Gspef-atpub14, armadill 99.3 2.1E-12 7.3E-17 88.9 4.7 50 160-211 5-54 (78)
7 2csy_A Zinc finger protein 183 99.3 5E-12 1.7E-16 87.8 5.8 50 159-211 11-60 (81)
8 2d8t_A Dactylidin, ring finger 99.3 3.3E-12 1.1E-16 86.6 4.7 50 160-212 12-61 (71)
9 2ysj_A Tripartite motif-contai 99.3 1E-11 3.5E-16 82.0 6.5 48 158-206 15-63 (63)
10 1chc_A Equine herpes virus-1 r 99.2 9.7E-12 3.3E-16 83.3 5.3 52 161-214 3-54 (68)
11 4ayc_A E3 ubiquitin-protein li 99.2 2.9E-12 9.9E-17 98.1 2.9 49 161-212 51-99 (138)
12 2ep4_A Ring finger protein 24; 99.2 1.7E-11 5.9E-16 83.5 6.4 58 159-218 11-70 (74)
13 2ecw_A Tripartite motif-contai 99.2 1.4E-11 4.8E-16 85.7 6.0 53 159-212 15-71 (85)
14 2egp_A Tripartite motif-contai 99.2 3.5E-12 1.2E-16 87.9 2.7 53 159-212 8-65 (79)
15 3lrq_A E3 ubiquitin-protein li 99.2 4.6E-12 1.6E-16 91.7 3.2 50 161-212 20-70 (100)
16 2ct2_A Tripartite motif protei 99.2 1.6E-11 5.5E-16 86.2 5.9 54 158-212 10-68 (88)
17 2ecj_A Tripartite motif-contai 99.2 2.2E-11 7.4E-16 78.8 6.0 47 159-206 11-58 (58)
18 3fl2_A E3 ubiquitin-protein li 99.2 6.9E-12 2.3E-16 94.1 4.1 50 161-212 50-99 (124)
19 2ecv_A Tripartite motif-contai 99.2 2.1E-11 7.2E-16 84.8 5.9 53 159-212 15-71 (85)
20 3l11_A E3 ubiquitin-protein li 99.2 5.1E-12 1.7E-16 93.6 2.3 53 158-212 10-62 (115)
21 2kr4_A Ubiquitin conjugation f 99.2 2.3E-11 8E-16 85.4 5.3 51 159-212 10-60 (85)
22 2ea6_A Ring finger protein 4; 99.2 1.5E-11 5.3E-16 82.3 4.1 52 158-211 10-67 (69)
23 2ect_A Ring finger protein 126 99.2 5.5E-11 1.9E-15 81.7 6.1 54 158-213 10-65 (78)
24 2ckl_A Polycomb group ring fin 99.2 2.5E-11 8.4E-16 88.9 4.6 50 161-213 13-63 (108)
25 3ng2_A RNF4, snurf, ring finge 99.1 1.3E-11 4.6E-16 83.1 2.5 51 160-212 7-63 (71)
26 1bor_A Transcription factor PM 99.1 1.8E-11 6E-16 79.2 2.6 45 161-211 4-48 (56)
27 2kre_A Ubiquitin conjugation f 99.1 2.9E-11 9.8E-16 87.6 3.9 51 159-212 25-75 (100)
28 2ecm_A Ring finger and CHY zin 99.1 4.1E-11 1.4E-15 76.7 4.2 48 161-211 3-54 (55)
29 1z6u_A NP95-like ring finger p 99.1 2.2E-11 7.7E-16 94.5 3.5 51 161-213 76-126 (150)
30 1g25_A CDK-activating kinase a 99.1 3.2E-11 1.1E-15 80.1 3.6 50 162-212 2-55 (65)
31 1iym_A EL5; ring-H2 finger, ub 99.1 5.2E-11 1.8E-15 76.3 4.4 48 161-211 3-54 (55)
32 2y43_A E3 ubiquitin-protein li 99.1 2.6E-11 9E-16 87.3 3.3 49 161-212 20-69 (99)
33 1wgm_A Ubiquitin conjugation f 99.1 9.6E-11 3.3E-15 84.5 5.7 51 159-212 18-69 (98)
34 1jm7_A BRCA1, breast cancer ty 99.1 4.1E-11 1.4E-15 87.9 3.7 50 162-212 20-70 (112)
35 2kiz_A E3 ubiquitin-protein li 99.1 1.3E-10 4.6E-15 77.9 5.7 51 159-212 10-63 (69)
36 3hct_A TNF receptor-associated 99.1 5.4E-11 1.8E-15 88.5 3.9 52 159-212 14-65 (118)
37 2ckl_B Ubiquitin ligase protei 99.1 4.5E-11 1.5E-15 93.9 3.6 52 160-213 51-103 (165)
38 2ecn_A Ring finger protein 141 99.1 5.2E-11 1.8E-15 80.2 3.2 53 160-216 12-64 (70)
39 2xeu_A Ring finger protein 4; 99.1 3.2E-11 1.1E-15 79.5 1.7 49 162-212 2-56 (64)
40 1e4u_A Transcriptional repress 99.1 1.9E-10 6.5E-15 79.5 5.5 54 159-214 7-64 (78)
41 2l0b_A E3 ubiquitin-protein li 99.1 8.1E-11 2.8E-15 83.6 3.5 49 160-211 37-88 (91)
42 1rmd_A RAG1; V(D)J recombinati 99.0 9.3E-11 3.2E-15 86.8 3.5 51 160-212 20-70 (116)
43 2yu4_A E3 SUMO-protein ligase 99.0 1.4E-10 4.8E-15 82.9 4.2 49 160-209 4-59 (94)
44 2c2l_A CHIP, carboxy terminus 99.0 1.4E-10 4.6E-15 97.8 4.7 52 159-212 204-255 (281)
45 1x4j_A Ring finger protein 38; 99.0 1.3E-10 4.4E-15 79.3 3.3 51 160-212 20-72 (75)
46 1v87_A Deltex protein 2; ring- 99.0 3E-10 1E-14 83.7 5.1 50 163-212 25-94 (114)
47 1jm7_B BARD1, BRCA1-associated 99.0 7.4E-11 2.5E-15 87.6 1.6 46 161-211 20-66 (117)
48 3knv_A TNF receptor-associated 99.0 5.6E-11 1.9E-15 91.3 0.9 51 159-211 27-77 (141)
49 2f42_A STIP1 homology and U-bo 99.0 3.1E-10 1.1E-14 90.3 4.6 51 160-212 103-153 (179)
50 2ea5_A Cell growth regulator w 99.0 1.7E-09 5.8E-14 72.6 6.8 53 160-219 12-65 (68)
51 4ic3_A E3 ubiquitin-protein li 98.9 1.6E-10 5.5E-15 78.9 1.5 48 161-215 22-70 (74)
52 2vje_A E3 ubiquitin-protein li 98.9 4.2E-10 1.4E-14 74.7 3.3 52 161-215 6-60 (64)
53 2y1n_A E3 ubiquitin-protein li 98.9 6.2E-10 2.1E-14 98.2 4.7 54 163-218 332-385 (389)
54 2vje_B MDM4 protein; proto-onc 98.9 6E-10 2.1E-14 73.7 3.3 52 161-215 5-59 (63)
55 2ecg_A Baculoviral IAP repeat- 98.9 6.6E-10 2.3E-14 76.0 2.8 48 161-215 23-71 (75)
56 3htk_C E3 SUMO-protein ligase 98.9 6E-10 2E-14 93.1 3.0 52 159-211 177-231 (267)
57 2ecl_A Ring-box protein 2; RNF 98.9 2.7E-09 9.4E-14 74.0 5.7 48 162-211 14-75 (81)
58 4ap4_A E3 ubiquitin ligase RNF 98.9 4.9E-10 1.7E-14 84.1 2.0 52 161-214 5-62 (133)
59 3hcs_A TNF receptor-associated 98.9 1.2E-09 3.9E-14 86.2 4.0 52 159-212 14-65 (170)
60 2yho_A E3 ubiquitin-protein li 98.8 1.4E-09 4.8E-14 75.2 1.7 52 161-219 16-68 (79)
61 3dpl_R Ring-box protein 1; ubi 98.7 7.2E-09 2.4E-13 75.6 4.6 48 162-211 36-100 (106)
62 2bay_A PRE-mRNA splicing facto 98.6 1.7E-08 5.7E-13 66.3 3.4 49 163-214 3-52 (61)
63 4ap4_A E3 ubiquitin ligase RNF 98.6 7.8E-09 2.7E-13 77.5 1.7 51 160-212 69-125 (133)
64 1wim_A KIAA0161 protein; ring 98.6 1.7E-08 5.7E-13 71.8 2.0 47 162-209 4-61 (94)
65 3vk6_A E3 ubiquitin-protein li 98.5 4.1E-08 1.4E-12 69.8 3.2 54 164-218 2-55 (101)
66 3t6p_A Baculoviral IAP repeat- 98.5 1.5E-08 5.1E-13 88.6 1.1 47 161-214 293-340 (345)
67 4a0k_B E3 ubiquitin-protein li 98.5 1.2E-08 3.9E-13 75.8 0.2 48 162-211 47-111 (117)
68 2d8s_A Cellular modulator of i 98.5 2.9E-07 1E-11 63.6 6.7 52 159-211 11-69 (80)
69 2ct0_A Non-SMC element 1 homol 98.2 3.8E-06 1.3E-10 57.0 7.0 51 161-211 13-63 (74)
70 1vyx_A ORF K3, K3RING; zinc-bi 97.7 3E-05 1E-09 50.3 3.5 50 161-211 4-58 (60)
71 3k1l_B Fancl; UBC, ring, RWD, 97.4 5.6E-05 1.9E-09 65.4 2.1 52 160-211 305-372 (381)
72 3nw0_A Non-structural maintena 97.0 0.00067 2.3E-08 56.1 5.2 49 163-211 180-228 (238)
73 2jun_A Midline-1; B-BOX, TRIM, 95.7 0.0051 1.8E-07 43.4 2.6 33 162-195 2-37 (101)
74 2cs3_A Protein C14ORF4, MY039 93.6 0.12 4.1E-06 35.0 4.8 37 160-197 12-52 (93)
75 3i2d_A E3 SUMO-protein ligase 93.6 0.059 2E-06 47.0 4.3 51 161-211 247-299 (371)
76 2ko5_A Ring finger protein Z; 93.5 0.082 2.8E-06 36.9 4.0 56 159-218 24-79 (99)
77 4fo9_A E3 SUMO-protein ligase 93.2 0.074 2.5E-06 46.2 4.2 52 160-211 212-265 (360)
78 3m62_A Ubiquitin conjugation f 89.5 0.35 1.2E-05 47.1 5.0 50 160-212 888-938 (968)
79 1weo_A Cellulose synthase, cat 89.0 0.66 2.3E-05 31.9 4.7 50 162-212 15-70 (93)
80 3o36_A Transcription intermedi 86.8 0.34 1.2E-05 37.8 2.6 49 162-211 3-53 (184)
81 2lri_C Autoimmune regulator; Z 82.6 1.3 4.6E-05 28.6 3.6 48 161-209 10-59 (66)
82 2lbm_A Transcriptional regulat 82.0 1.5 5.3E-05 32.9 4.2 47 161-208 61-116 (142)
83 1z60_A TFIIH basal transcripti 79.7 1.6 5.6E-05 27.6 3.1 41 164-206 16-58 (59)
84 3ql9_A Transcriptional regulat 77.6 2.2 7.5E-05 31.5 3.7 47 161-208 55-110 (129)
85 1wfk_A Zinc finger, FYVE domai 77.1 1.4 4.9E-05 30.1 2.4 34 160-193 6-42 (88)
86 1wd2_A Ariadne-1 protein homol 73.8 0.54 1.9E-05 29.9 -0.4 33 164-196 7-46 (60)
87 2fiy_A Protein FDHE homolog; F 72.1 0.43 1.5E-05 40.6 -1.6 56 161-220 180-241 (309)
88 1joc_A EEA1, early endosomal a 72.0 1.8 6.1E-05 31.7 2.0 31 163-193 69-102 (125)
89 1mm2_A MI2-beta; PHD, zinc fin 70.4 1.5 5.3E-05 27.7 1.1 49 161-210 7-57 (61)
90 1wil_A KIAA1045 protein; ring 70.3 22 0.00076 24.1 7.2 55 159-215 11-82 (89)
91 2l43_A N-teminal domain from h 68.1 1.4 4.9E-05 30.1 0.7 53 158-210 20-76 (88)
92 1vfy_A Phosphatidylinositol-3- 67.6 2.8 9.6E-05 27.5 2.0 29 164-192 12-43 (73)
93 1y02_A CARP2, FYVE-ring finger 67.3 2.2 7.5E-05 31.1 1.6 43 162-206 18-63 (120)
94 1z2q_A LM5-1; membrane protein 67.2 2.9 0.0001 28.2 2.1 32 162-193 20-54 (84)
95 2l5u_A Chromodomain-helicase-D 67.1 3.2 0.00011 26.2 2.1 47 161-208 9-57 (61)
96 2yw8_A RUN and FYVE domain-con 65.9 3 0.0001 28.0 1.9 32 162-193 18-52 (82)
97 3t7l_A Zinc finger FYVE domain 65.8 3.1 0.00011 28.5 2.1 33 162-194 19-54 (90)
98 2jne_A Hypothetical protein YF 65.7 0.4 1.4E-05 33.5 -2.5 45 163-215 32-76 (101)
99 3u5n_A E3 ubiquitin-protein li 65.0 1.6 5.6E-05 34.6 0.5 49 161-210 5-55 (207)
100 2a20_A Regulating synaptic mem 65.0 2.9 9.8E-05 26.4 1.5 40 159-211 5-44 (62)
101 2gmg_A Hypothetical protein PF 64.7 3.4 0.00012 29.3 2.1 37 173-216 64-100 (105)
102 1x4u_A Zinc finger, FYVE domai 64.5 3.2 0.00011 28.0 1.9 31 162-192 13-46 (84)
103 1dvp_A HRS, hepatocyte growth 64.3 2.4 8.2E-05 33.9 1.4 31 162-192 160-193 (220)
104 2pv0_B DNA (cytosine-5)-methyl 63.2 7.3 0.00025 34.0 4.3 48 161-209 91-148 (386)
105 2d8v_A Zinc finger FYVE domain 62.5 3.4 0.00012 26.7 1.6 35 160-196 5-40 (67)
106 3zyq_A Hepatocyte growth facto 62.4 2.9 0.0001 33.6 1.6 32 162-193 163-197 (226)
107 1fp0_A KAP-1 corepressor; PHD 61.8 4 0.00014 28.0 1.9 50 159-209 21-72 (88)
108 2xqn_T Testin, TESS; metal-bin 59.9 6.6 0.00023 28.0 3.0 47 162-212 29-75 (126)
109 2yql_A PHD finger protein 21A; 59.4 0.96 3.3E-05 28.1 -1.4 47 160-207 6-54 (56)
110 3mpx_A FYVE, rhogef and PH dom 58.3 2.1 7.1E-05 37.5 0.0 46 163-208 375-428 (434)
111 2ro1_A Transcription intermedi 58.1 3.5 0.00012 32.2 1.3 47 163-210 2-50 (189)
112 3mjh_B Early endosome antigen 56.4 1.9 6.7E-05 24.1 -0.3 14 163-176 5-18 (34)
113 2ee8_A Protein ODD-skipped-rel 56.2 36 0.0012 22.5 6.3 53 160-212 14-85 (106)
114 1m3v_A FLIN4, fusion of the LI 55.8 14 0.00049 26.2 4.3 47 163-212 32-81 (122)
115 2k16_A Transcription initiatio 55.7 3.7 0.00013 26.9 0.9 52 160-211 15-70 (75)
116 2cup_A Skeletal muscle LIM-pro 52.4 5.8 0.0002 27.0 1.6 46 162-211 32-77 (101)
117 2rgt_A Fusion of LIM/homeobox 50.8 17 0.0006 27.3 4.2 46 162-212 32-77 (169)
118 2lcq_A Putative toxin VAPC6; P 49.8 4.2 0.00014 30.8 0.5 15 201-215 149-163 (165)
119 1x62_A C-terminal LIM domain p 48.2 23 0.0008 22.8 4.0 40 161-211 13-52 (79)
120 1x4w_A Hypothetical protein FL 46.9 10 0.00035 24.6 1.9 29 160-189 12-44 (67)
121 3vth_A Hydrogenase maturation 46.8 11 0.00038 35.9 3.0 53 159-211 107-194 (761)
122 1wg2_A Zinc finger (AN1-like) 46.3 23 0.00078 22.7 3.5 28 161-189 13-41 (64)
123 3a1b_A DNA (cytosine-5)-methyl 45.3 19 0.00064 27.4 3.5 46 162-208 78-133 (159)
124 3pwf_A Rubrerythrin; non heme 44.0 11 0.00037 28.9 2.0 14 201-214 154-167 (170)
125 1xwh_A Autoimmune regulator; P 43.5 2.7 9.2E-05 27.0 -1.3 47 161-208 6-54 (66)
126 2xjy_A Rhombotin-2; oncoprotei 43.3 19 0.00067 25.6 3.3 48 162-212 28-78 (131)
127 2jtn_A LIM domain-binding prot 43.1 19 0.00065 27.4 3.4 45 163-212 87-131 (182)
128 4g9i_A Hydrogenase maturation 42.3 10 0.00035 36.2 2.0 27 185-211 157-189 (772)
129 2uzg_A Ubiquitin carboxyl-term 42.2 13 0.00045 25.7 2.1 27 163-189 25-53 (97)
130 2dmd_A Zinc finger protein 64, 41.4 21 0.00073 23.1 3.1 51 162-212 7-76 (96)
131 1zbd_B Rabphilin-3A; G protein 40.2 9.6 0.00033 28.1 1.1 48 161-208 53-106 (134)
132 2yt9_A Zinc finger-containing 40.0 25 0.00084 22.7 3.2 13 200-212 65-77 (95)
133 2jmo_A Parkin; IBR, E3 ligase, 39.5 6.8 0.00023 26.0 0.2 15 181-195 55-69 (80)
134 1f62_A Transcription factor WS 39.1 20 0.0007 21.2 2.4 44 165-208 2-49 (51)
135 2zet_C Melanophilin; complex, 39.0 13 0.00045 28.0 1.8 47 161-208 66-116 (153)
136 2puy_A PHD finger protein 21A; 38.9 4 0.00014 25.5 -1.0 47 162-209 4-52 (60)
137 1wev_A Riken cDNA 1110020M19; 37.9 2 6.8E-05 29.4 -2.8 53 161-213 14-76 (88)
138 2ysm_A Myeloid/lymphoid or mix 37.8 12 0.0004 26.3 1.3 48 160-207 4-55 (111)
139 2jrp_A Putative cytoplasmic pr 36.6 2.9 9.8E-05 28.3 -2.0 42 164-213 3-44 (81)
140 1wff_A Riken cDNA 2810002D23 p 36.5 30 0.001 23.4 3.1 57 161-224 23-81 (85)
141 1yuz_A Nigerythrin; rubrythrin 36.4 15 0.00053 28.8 1.9 14 200-213 186-199 (202)
142 1l8d_A DNA double-strand break 36.1 9.4 0.00032 26.8 0.5 10 202-211 49-58 (112)
143 1wen_A Inhibitor of growth fam 35.3 29 0.00099 22.4 2.8 47 161-210 14-66 (71)
144 1weu_A Inhibitor of growth fam 35.1 28 0.00095 23.8 2.8 46 161-209 34-85 (91)
145 2ku3_A Bromodomain-containing 34.8 8 0.00027 25.2 -0.0 49 160-208 13-65 (71)
146 2dlq_A GLI-kruppel family memb 34.7 36 0.0012 23.0 3.5 13 200-212 94-106 (124)
147 1wfh_A Zinc finger (AN1-like) 34.4 63 0.0022 20.6 4.2 28 161-189 13-41 (64)
148 2yt5_A Metal-response element- 33.1 3.8 0.00013 26.0 -1.9 51 160-210 3-62 (66)
149 1x61_A Thyroid receptor intera 32.4 59 0.002 20.1 4.0 34 163-196 33-66 (72)
150 2ct7_A Ring finger protein 31; 32.2 3 0.0001 28.2 -2.6 29 166-194 28-61 (86)
151 3c5k_A HD6, histone deacetylas 31.9 16 0.00056 25.8 1.2 25 163-188 24-48 (109)
152 1b8t_A Protein (CRP1); LIM dom 31.5 46 0.0016 25.4 3.9 45 163-211 142-186 (192)
153 3uk3_C Zinc finger protein 217 31.5 18 0.00061 20.9 1.2 41 163-212 4-44 (57)
154 1zfo_A LAsp-1; LIM domain, zin 31.4 30 0.001 18.3 2.0 18 201-218 4-21 (31)
155 2o35_A Hypothetical protein DU 31.3 17 0.00059 25.3 1.2 12 186-197 43-54 (105)
156 2cor_A Pinch protein; LIM doma 31.1 63 0.0021 20.7 4.0 38 163-211 15-52 (79)
157 1x64_A Alpha-actinin-2 associa 31.0 69 0.0023 20.9 4.3 41 161-212 23-63 (89)
158 3fyb_A Protein of unknown func 30.8 18 0.00061 25.2 1.2 12 186-197 42-53 (104)
159 1we9_A PHD finger family prote 30.3 8.8 0.0003 24.1 -0.4 49 160-208 3-57 (64)
160 1iml_A CRIP, cysteine rich int 30.3 42 0.0014 21.2 3.0 43 162-209 26-70 (76)
161 1lko_A Rubrerythrin all-iron(I 30.2 17 0.00059 28.2 1.2 14 202-215 173-186 (191)
162 1rut_X Flinc4, fusion protein 30.1 15 0.00051 28.2 0.8 48 162-212 31-81 (188)
163 2d8x_A Protein pinch; LIM doma 29.5 33 0.0011 21.3 2.3 32 164-195 32-63 (70)
164 2lce_A B-cell lymphoma 6 prote 28.7 28 0.00097 21.4 1.9 44 160-212 14-57 (74)
165 4ayb_P DNA-directed RNA polyme 28.6 16 0.00055 21.9 0.6 16 199-214 22-37 (48)
166 2jvx_A NF-kappa-B essential mo 27.9 12 0.00042 19.8 -0.0 13 200-212 3-15 (28)
167 1x4v_A Hypothetical protein LO 27.7 83 0.0029 19.8 3.9 39 162-205 11-51 (63)
168 1wig_A KIAA1808 protein; LIM d 27.5 48 0.0017 20.9 2.9 32 163-195 31-64 (73)
169 1x4s_A Protein FON, zinc finge 27.0 29 0.001 21.8 1.6 34 161-194 9-45 (59)
170 3lqh_A Histone-lysine N-methyl 26.9 16 0.00055 28.4 0.4 48 164-211 3-65 (183)
171 2l4z_A DNA endonuclease RBBP8, 26.8 55 0.0019 23.2 3.4 40 162-211 60-99 (123)
172 2lv9_A Histone-lysine N-methyl 26.7 36 0.0012 23.3 2.3 47 161-208 26-75 (98)
173 2e6r_A Jumonji/ARID domain-con 26.6 7.9 0.00027 26.5 -1.2 49 160-208 13-65 (92)
174 1wyh_A SLIM 2, skeletal muscle 26.1 60 0.0021 20.0 3.2 30 164-193 34-63 (72)
175 6rxn_A Rubredoxin; electron tr 26.0 25 0.00085 20.9 1.1 12 200-211 30-41 (46)
176 2kmk_A Zinc finger protein GFI 25.9 29 0.00099 21.5 1.6 14 199-212 56-69 (82)
177 2dar_A PDZ and LIM domain prot 25.3 49 0.0017 21.7 2.7 38 163-211 25-62 (90)
178 1v6g_A Actin binding LIM prote 25.2 37 0.0013 21.8 2.0 37 164-211 16-52 (81)
179 2dj7_A Actin-binding LIM prote 25.0 86 0.0029 20.1 3.8 41 161-211 13-53 (80)
180 2co8_A NEDD9 interacting prote 24.4 1.4E+02 0.0048 19.1 4.9 42 161-212 13-54 (82)
181 1nyp_A Pinch protein; LIM doma 24.3 43 0.0015 20.4 2.1 24 164-188 6-29 (66)
182 2kn9_A Rubredoxin; metalloprot 24.2 37 0.0013 22.7 1.8 19 199-217 59-77 (81)
183 4rxn_A Rubredoxin; electron tr 24.0 34 0.0012 21.0 1.5 15 199-213 35-49 (54)
184 2m0e_A Zinc finger and BTB dom 24.0 31 0.0011 16.1 1.2 12 201-212 3-14 (29)
185 2d8z_A Four and A half LIM dom 23.6 61 0.0021 19.9 2.8 31 163-194 31-62 (70)
186 2ebt_A Krueppel-like factor 5; 23.5 1.2E+02 0.0041 19.3 4.5 52 161-212 13-87 (100)
187 1x6a_A LIMK-2, LIM domain kina 23.4 56 0.0019 20.8 2.6 12 183-194 63-74 (81)
188 1x6e_A Zinc finger protein 24; 23.4 21 0.00073 22.0 0.5 40 161-212 12-54 (72)
189 2v3b_B Rubredoxin 2, rubredoxi 23.4 35 0.0012 20.9 1.5 17 199-215 35-51 (55)
190 1x5w_A Zinc finger protein 64, 23.3 20 0.00067 21.9 0.3 40 161-212 7-49 (70)
191 1wfe_A Riken cDNA 2310008M20 p 23.0 48 0.0016 22.4 2.2 28 161-188 23-52 (86)
192 1dx8_A Rubredoxin; electron tr 22.9 44 0.0015 21.6 2.0 18 199-216 39-56 (70)
193 2cur_A Skeletal muscle LIM-pro 22.7 1.1E+02 0.0036 18.7 3.8 33 163-195 31-63 (69)
194 1ard_A Yeast transcription fac 22.2 40 0.0014 15.7 1.4 12 201-212 3-14 (29)
195 1x4l_A Skeletal muscle LIM-pro 21.9 77 0.0026 19.6 3.0 10 165-174 7-16 (72)
196 2cu8_A Cysteine-rich protein 2 21.9 78 0.0027 19.8 3.1 37 164-211 10-47 (76)
197 1wfp_A Zinc finger (AN1-like) 21.8 1.2E+02 0.0042 19.8 3.9 28 161-189 23-51 (74)
198 2e72_A POGO transposable eleme 21.6 28 0.00095 20.9 0.7 16 199-214 11-26 (49)
199 2lvu_A Zinc finger and BTB dom 26.7 20 0.00069 16.7 0.0 12 201-212 3-14 (26)
200 3v43_A Histone acetyltransfera 21.2 1.5E+02 0.0051 20.5 4.7 45 162-207 4-62 (112)
201 2d8y_A Eplin protein; LIM doma 21.1 1.8E+02 0.0061 18.9 5.8 33 163-195 42-74 (91)
202 1x68_A FHL5 protein; four-and- 20.9 68 0.0023 20.2 2.6 10 165-174 7-16 (76)
203 4gne_A Histone-lysine N-methyl 20.8 20 0.0007 25.3 -0.0 46 159-207 11-60 (107)
204 2ctu_A Zinc finger protein 483 20.6 32 0.0011 20.7 0.9 16 161-176 16-31 (73)
205 2vrw_B P95VAV, VAV1, proto-onc 20.4 45 0.0016 28.6 2.1 32 161-192 355-390 (406)
No 1
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.41 E-value=4.2e-13 Score=91.82 Aligned_cols=56 Identities=27% Similarity=0.623 Sum_probs=47.2
Q ss_pred CCCcCcccccccCCCCCCCCeecC-CCCcccHHHHHHHHhcCCCCCCCCCCccccccc
Q 027227 158 SSEEDVTTCPICQASPTTPFLALP-CQHRYCYYCLRTRCAASPSFRCSRCNEPVIAMQ 214 (226)
Q Consensus 158 ~~~~~~~~C~iC~~~~~~p~~~~~-CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~ 214 (226)
....++..|+||.+.+.+| +.++ |||.||..||..|+...+...||+||+++...+
T Consensus 10 ~~~~~~~~C~IC~~~~~~p-~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~ 66 (74)
T 2yur_A 10 DPIPDELLCLICKDIMTDA-VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPD 66 (74)
T ss_dssp CCSCGGGSCSSSCCCCTTC-EECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTT
T ss_pred ccCCCCCCCcCCChHHhCC-eEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCcc
Confidence 3456789999999999999 6788 999999999999998654578999999765433
No 2
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.36 E-value=1.9e-12 Score=88.02 Aligned_cols=56 Identities=27% Similarity=0.522 Sum_probs=46.8
Q ss_pred CCCcCcccccccCCCCCCCCeec-CCCCcccHHHHHHHHhcCCCCCCCCCCccccccccc
Q 027227 158 SSEEDVTTCPICQASPTTPFLAL-PCQHRYCYYCLRTRCAASPSFRCSRCNEPVIAMQRH 216 (226)
Q Consensus 158 ~~~~~~~~C~iC~~~~~~p~~~~-~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~ 216 (226)
...++...|+||++.+.+| +.+ +|||.||..||..|+.. ...||.||+++..-+..
T Consensus 10 ~~~~~~~~C~IC~~~~~~p-~~~~~CgH~fC~~Ci~~~~~~--~~~CP~Cr~~~~~~~~~ 66 (72)
T 2djb_A 10 SELTPYILCSICKGYLIDA-TTITECLHTFCKSCIVRHFYY--SNRCPKCNIVVHQTQPL 66 (72)
T ss_dssp CCCCGGGSCTTTSSCCSSC-EECSSSCCEECHHHHHHHHHH--CSSCTTTCCCCCSSCSC
T ss_pred hhcCCCCCCCCCChHHHCc-CEECCCCCHHHHHHHHHHHHc--CCcCCCcCcccCccccc
Confidence 3456789999999999999 554 99999999999999975 46899999998754443
No 3
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.35 E-value=9.1e-13 Score=93.68 Aligned_cols=52 Identities=29% Similarity=0.670 Sum_probs=45.8
Q ss_pred CCcCcccccccCCCCCCCCeecC-CCCcccHHHHHHHHhcCCCCCCCCCCcccc
Q 027227 159 SEEDVTTCPICQASPTTPFLALP-CQHRYCYYCLRTRCAASPSFRCSRCNEPVI 211 (226)
Q Consensus 159 ~~~~~~~C~iC~~~~~~p~~~~~-CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 211 (226)
..+++..|+||.+.+.+| ++++ |||.||..||..|+...+...||.|+.++.
T Consensus 9 ~~~~~~~C~IC~~~~~~p-~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 9 PIPDELLCLICKDIMTDA-VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp CCCTTTEETTTTEECSSC-EECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred cCCcCCCCCCCChhhcCc-eECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 456789999999999999 7888 999999999999997655578999999874
No 4
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.33 E-value=1.9e-12 Score=86.40 Aligned_cols=52 Identities=27% Similarity=0.692 Sum_probs=44.9
Q ss_pred CCcCcccccccCCCCCCCCeecCCCCcccHHHHHHHHhcCCCCCCCCCCccccc
Q 027227 159 SEEDVTTCPICQASPTTPFLALPCQHRYCYYCLRTRCAASPSFRCSRCNEPVIA 212 (226)
Q Consensus 159 ~~~~~~~C~iC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 212 (226)
..+++..|+||.+.+.+| +.++|||.||..|+..|+.. ....||.|++++..
T Consensus 11 ~~~~~~~C~IC~~~~~~p-~~~~CgH~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~ 62 (66)
T 2ecy_A 11 TVEDKYKCEKCHLVLCSP-KQTECGHRFCESCMAALLSS-SSPKCTACQESIVK 62 (66)
T ss_dssp SCCCCEECTTTCCEESSC-CCCSSSCCCCHHHHHHHHTT-SSCCCTTTCCCCCT
T ss_pred cCCcCCCCCCCChHhcCe-eECCCCCHHHHHHHHHHHHh-CcCCCCCCCcCCCh
Confidence 456789999999999999 67899999999999999963 35689999998864
No 5
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.29 E-value=3.5e-12 Score=86.63 Aligned_cols=53 Identities=25% Similarity=0.699 Sum_probs=45.5
Q ss_pred CCCcCcccccccCCCCCCCCeecCCCCcccHHHHHHHHhc-CCCCCCCCCCcccc
Q 027227 158 SSEEDVTTCPICQASPTTPFLALPCQHRYCYYCLRTRCAA-SPSFRCSRCNEPVI 211 (226)
Q Consensus 158 ~~~~~~~~C~iC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-~~~~~CP~Cr~~~~ 211 (226)
...+++..|+||.+.+.+| +.++|||.||..|+..|+.. .....||.||+++.
T Consensus 15 ~~~~~~~~C~IC~~~~~~~-~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 68 (73)
T 2ysl_A 15 NKLQEEVICPICLDILQKP-VTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVR 68 (73)
T ss_dssp CCCCCCCBCTTTCSBCSSE-EECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCC
T ss_pred HhCccCCEeccCCcccCCe-EEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCC
Confidence 3456788999999999999 78899999999999999863 23568999999886
No 6
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.29 E-value=2.1e-12 Score=88.93 Aligned_cols=50 Identities=16% Similarity=0.303 Sum_probs=44.6
Q ss_pred CcCcccccccCCCCCCCCeecCCCCcccHHHHHHHHhcCCCCCCCCCCcccc
Q 027227 160 EEDVTTCPICQASPTTPFLALPCQHRYCYYCLRTRCAASPSFRCSRCNEPVI 211 (226)
Q Consensus 160 ~~~~~~C~iC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 211 (226)
..++..|+||.+.+.+| ++++|||+||..||..|+.. +...||.|++++.
T Consensus 5 ~~~~~~C~IC~~~~~~P-v~~~CgH~fc~~Ci~~~~~~-~~~~CP~C~~~~~ 54 (78)
T 1t1h_A 5 FPEYFRCPISLELMKDP-VIVSTGQTYERSSIQKWLDA-GHKTCPKSQETLL 54 (78)
T ss_dssp CSSSSSCTTTSCCCSSE-EEETTTEEEEHHHHHHHHTT-TCCBCTTTCCBCS
T ss_pred CcccCCCCCccccccCC-EEcCCCCeecHHHHHHHHHH-CcCCCCCCcCCCC
Confidence 45689999999999999 78899999999999999974 3578999999886
No 7
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.27 E-value=5e-12 Score=87.79 Aligned_cols=50 Identities=30% Similarity=0.642 Sum_probs=44.2
Q ss_pred CCcCcccccccCCCCCCCCeecCCCCcccHHHHHHHHhcCCCCCCCCCCcccc
Q 027227 159 SEEDVTTCPICQASPTTPFLALPCQHRYCYYCLRTRCAASPSFRCSRCNEPVI 211 (226)
Q Consensus 159 ~~~~~~~C~iC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 211 (226)
..++...|+||.+.+.+| +.++|||.||..|+..|+.. ...||+|+.++.
T Consensus 11 ~~~~~~~C~IC~~~~~~p-~~~~CgH~fC~~Ci~~~~~~--~~~CP~Cr~~~~ 60 (81)
T 2csy_A 11 EEEIPFRCFICRQAFQNP-VVTKCRHYFCESCALEHFRA--TPRCYICDQPTG 60 (81)
T ss_dssp CCCCCSBCSSSCSBCCSE-EECTTSCEEEHHHHHHHHHH--CSBCSSSCCBCC
T ss_pred cCCCCCCCcCCCchhcCe-eEccCCCHhHHHHHHHHHHC--CCcCCCcCcccc
Confidence 345678999999999999 78999999999999999975 568999999885
No 8
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.27 E-value=3.3e-12 Score=86.56 Aligned_cols=50 Identities=30% Similarity=0.821 Sum_probs=44.0
Q ss_pred CcCcccccccCCCCCCCCeecCCCCcccHHHHHHHHhcCCCCCCCCCCccccc
Q 027227 160 EEDVTTCPICQASPTTPFLALPCQHRYCYYCLRTRCAASPSFRCSRCNEPVIA 212 (226)
Q Consensus 160 ~~~~~~C~iC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 212 (226)
..++..|+||++.+.+| +.++|||.||+.|+..|+.. ...||+||.++..
T Consensus 12 ~~~~~~C~IC~~~~~~~-~~~~CgH~fC~~Ci~~~~~~--~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 12 SLTVPECAICLQTCVHP-VSLPCKHVFCYLCVKGASWL--GKRCALCRQEIPE 61 (71)
T ss_dssp SSSCCBCSSSSSBCSSE-EEETTTEEEEHHHHHHCTTC--SSBCSSSCCBCCH
T ss_pred CCCCCCCccCCcccCCC-EEccCCCHHHHHHHHHHHHC--CCcCcCcCchhCH
Confidence 45678999999999999 78899999999999999865 4689999998863
No 9
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.26 E-value=1e-11 Score=81.98 Aligned_cols=48 Identities=27% Similarity=0.772 Sum_probs=41.2
Q ss_pred CCCcCcccccccCCCCCCCCeecCCCCcccHHHHHHHHhcC-CCCCCCCC
Q 027227 158 SSEEDVTTCPICQASPTTPFLALPCQHRYCYYCLRTRCAAS-PSFRCSRC 206 (226)
Q Consensus 158 ~~~~~~~~C~iC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~-~~~~CP~C 206 (226)
...+++..|+||.+.+.+| +.++|||+||+.||..|+... ....||.|
T Consensus 15 ~~~~~~~~C~IC~~~~~~p-~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 15 NKLQEEVICPICLDILQKP-VTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCCBCTTTCSBCSSC-EECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred HhCccCCCCCcCCchhCCe-EEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 3456789999999999999 788999999999999999742 35689998
No 10
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.23 E-value=9.7e-12 Score=83.26 Aligned_cols=52 Identities=33% Similarity=0.809 Sum_probs=44.5
Q ss_pred cCcccccccCCCCCCCCeecCCCCcccHHHHHHHHhcCCCCCCCCCCccccccc
Q 027227 161 EDVTTCPICQASPTTPFLALPCQHRYCYYCLRTRCAASPSFRCSRCNEPVIAMQ 214 (226)
Q Consensus 161 ~~~~~C~iC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~ 214 (226)
+++..|+||.+.+.+|.+.++|||.||+.|+..|+.. ...||.||.++....
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~--~~~CP~Cr~~~~~~~ 54 (68)
T 1chc_A 3 TVAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQ--NPTCPLCKVPVESVV 54 (68)
T ss_dssp CCCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHH--SCSTTTTCCCCCCEE
T ss_pred CCCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhC--cCcCcCCChhhHhhh
Confidence 3467899999999997567999999999999999975 468999999987543
No 11
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.23 E-value=2.9e-12 Score=98.07 Aligned_cols=49 Identities=24% Similarity=0.698 Sum_probs=43.3
Q ss_pred cCcccccccCCCCCCCCeecCCCCcccHHHHHHHHhcCCCCCCCCCCccccc
Q 027227 161 EDVTTCPICQASPTTPFLALPCQHRYCYYCLRTRCAASPSFRCSRCNEPVIA 212 (226)
Q Consensus 161 ~~~~~C~iC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 212 (226)
+++..|+||.+.+.+| ++++|||.||..||..|+.. ...||.||.++..
T Consensus 51 ~~~~~C~iC~~~~~~~-~~~~CgH~fc~~Ci~~~~~~--~~~CP~Cr~~~~~ 99 (138)
T 4ayc_A 51 ENELQCIICSEYFIEA-VTLNCAHSFCSYCINEWMKR--KIECPICRKDIKS 99 (138)
T ss_dssp HHHSBCTTTCSBCSSE-EEETTSCEEEHHHHHHHTTT--CSBCTTTCCBCCC
T ss_pred cccCCCcccCcccCCc-eECCCCCCccHHHHHHHHHc--CCcCCCCCCcCCC
Confidence 3567899999999999 78999999999999999865 5689999999864
No 12
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.23 E-value=1.7e-11 Score=83.47 Aligned_cols=58 Identities=21% Similarity=0.386 Sum_probs=46.3
Q ss_pred CCcCcccccccCCCCCCCC--eecCCCCcccHHHHHHHHhcCCCCCCCCCCccccccccccc
Q 027227 159 SEEDVTTCPICQASPTTPF--LALPCQHRYCYYCLRTRCAASPSFRCSRCNEPVIAMQRHGV 218 (226)
Q Consensus 159 ~~~~~~~C~iC~~~~~~p~--~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~ 218 (226)
...++..|+||++.+.++. ..++|||.||..|+..|+... ..||.||.++..+..+..
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~--~~CP~Cr~~~~~~~~~~~ 70 (74)
T 2ep4_A 11 ELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVR--KVCPLCNMPVLQLAQLSG 70 (74)
T ss_dssp CCCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHC--SBCTTTCCBCSSCCSCCC
T ss_pred cCCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcC--CcCCCcCcccccccccCC
Confidence 3456789999999988762 223999999999999999763 489999999987666544
No 13
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.22 E-value=1.4e-11 Score=85.70 Aligned_cols=53 Identities=25% Similarity=0.615 Sum_probs=45.8
Q ss_pred CCcCcccccccCCCCCCCCeecCCCCcccHHHHHHHHhcC----CCCCCCCCCccccc
Q 027227 159 SEEDVTTCPICQASPTTPFLALPCQHRYCYYCLRTRCAAS----PSFRCSRCNEPVIA 212 (226)
Q Consensus 159 ~~~~~~~C~iC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~----~~~~CP~Cr~~~~~ 212 (226)
...++..|+||.+.+.+| +.++|||.||..|+..|+... ....||.|+.++..
T Consensus 15 ~~~~~~~C~IC~~~~~~p-~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecw_A 15 MIKEEVTCPICLELLKEP-VSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPF 71 (85)
T ss_dssp CCCTTTSCTTTCSCCSSC-EECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCT
T ss_pred hCccCCCCcCCChhhCcc-eeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCH
Confidence 346778999999999999 789999999999999998763 26789999998863
No 14
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.22 E-value=3.5e-12 Score=87.89 Aligned_cols=53 Identities=28% Similarity=0.613 Sum_probs=45.3
Q ss_pred CCcCcccccccCCCCCCCCeecCCCCcccHHHHHHHHhcC-----CCCCCCCCCccccc
Q 027227 159 SEEDVTTCPICQASPTTPFLALPCQHRYCYYCLRTRCAAS-----PSFRCSRCNEPVIA 212 (226)
Q Consensus 159 ~~~~~~~C~iC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~-----~~~~CP~Cr~~~~~ 212 (226)
..+++..|+||.+.+.+| +.++|||.||..|+..|+... ....||.||.++..
T Consensus 8 ~~~~~~~C~IC~~~~~~p-~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 8 NVQEEVTCPICLELLTEP-LSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp CCCCCCEETTTTEECSSC-CCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred hcccCCCCcCCCcccCCe-eECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence 456778999999999999 678999999999999998652 26789999999863
No 15
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.21 E-value=4.6e-12 Score=91.67 Aligned_cols=50 Identities=22% Similarity=0.583 Sum_probs=43.9
Q ss_pred cCcccccccCCCCCCCCee-cCCCCcccHHHHHHHHhcCCCCCCCCCCccccc
Q 027227 161 EDVTTCPICQASPTTPFLA-LPCQHRYCYYCLRTRCAASPSFRCSRCNEPVIA 212 (226)
Q Consensus 161 ~~~~~C~iC~~~~~~p~~~-~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 212 (226)
+++..|+||++.+.+| +. ++|||.||+.||..|+... ...||.||.++..
T Consensus 20 ~~~~~C~IC~~~~~~p-~~~~~CgH~FC~~Ci~~~~~~~-~~~CP~Cr~~~~~ 70 (100)
T 3lrq_A 20 AEVFRCFICMEKLRDA-RLCPHCSKLCCFSCIRRWLTEQ-RAQCPHCRAPLQL 70 (100)
T ss_dssp HHHTBCTTTCSBCSSE-EECTTTCCEEEHHHHHHHHHHT-CSBCTTTCCBCCG
T ss_pred CCCCCCccCCccccCc-cccCCCCChhhHHHHHHHHHHC-cCCCCCCCCcCCH
Confidence 4678999999999999 67 9999999999999999863 2689999999863
No 16
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.21 E-value=1.6e-11 Score=86.19 Aligned_cols=54 Identities=35% Similarity=0.666 Sum_probs=45.8
Q ss_pred CCCcCcccccccCCCCCC----CCeecCCCCcccHHHHHHHHhcC-CCCCCCCCCccccc
Q 027227 158 SSEEDVTTCPICQASPTT----PFLALPCQHRYCYYCLRTRCAAS-PSFRCSRCNEPVIA 212 (226)
Q Consensus 158 ~~~~~~~~C~iC~~~~~~----p~~~~~CgH~fC~~Ci~~~~~~~-~~~~CP~Cr~~~~~ 212 (226)
...++...|+||.+.+.+ | +.++|||.||..|+..|+... ....||.||.++..
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~-~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 68 (88)
T 2ct2_A 10 DALREVLECPICMESFTEEQLRP-KLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRI 68 (88)
T ss_dssp CCCCSCCBCTTTCCBCCTTSSCE-EECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCC
T ss_pred hhccCCCCCccCCccccccCCCe-EECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccc
Confidence 345677899999999998 8 788999999999999999763 24789999998764
No 17
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.21 E-value=2.2e-11 Score=78.84 Aligned_cols=47 Identities=21% Similarity=0.682 Sum_probs=40.3
Q ss_pred CCcCcccccccCCCCCCCCeecCCCCcccHHHHHHHHhc-CCCCCCCCC
Q 027227 159 SEEDVTTCPICQASPTTPFLALPCQHRYCYYCLRTRCAA-SPSFRCSRC 206 (226)
Q Consensus 159 ~~~~~~~C~iC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-~~~~~CP~C 206 (226)
...+...|+||.+.+.+| +.++|||.||..|+..|+.. +....||+|
T Consensus 11 ~~~~~~~C~IC~~~~~~p-~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 11 NLQVEASCSVCLEYLKEP-VIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CSCCCCBCSSSCCBCSSC-CCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred ccccCCCCccCCcccCcc-EeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 446778999999999999 68999999999999999754 346789998
No 18
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.21 E-value=6.9e-12 Score=94.12 Aligned_cols=50 Identities=30% Similarity=0.610 Sum_probs=44.3
Q ss_pred cCcccccccCCCCCCCCeecCCCCcccHHHHHHHHhcCCCCCCCCCCccccc
Q 027227 161 EDVTTCPICQASPTTPFLALPCQHRYCYYCLRTRCAASPSFRCSRCNEPVIA 212 (226)
Q Consensus 161 ~~~~~C~iC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 212 (226)
+++..|+||.+.+.+| ++++|||.||..|+..|+.. ....||.||.++..
T Consensus 50 ~~~~~C~IC~~~~~~p-~~~~CgH~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 50 EETFQCICCQELVFRP-ITTVCQHNVCKDCLDRSFRA-QVFSCPACRYDLGR 99 (124)
T ss_dssp HHHTBCTTTSSBCSSE-EECTTSCEEEHHHHHHHHHT-TCCBCTTTCCBCCT
T ss_pred ccCCCCCcCChHHcCc-EEeeCCCcccHHHHHHHHhH-CcCCCCCCCccCCC
Confidence 4568999999999999 78899999999999999974 45689999999875
No 19
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.20 E-value=2.1e-11 Score=84.81 Aligned_cols=53 Identities=30% Similarity=0.667 Sum_probs=45.7
Q ss_pred CCcCcccccccCCCCCCCCeecCCCCcccHHHHHHHHhc----CCCCCCCCCCccccc
Q 027227 159 SEEDVTTCPICQASPTTPFLALPCQHRYCYYCLRTRCAA----SPSFRCSRCNEPVIA 212 (226)
Q Consensus 159 ~~~~~~~C~iC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~----~~~~~CP~Cr~~~~~ 212 (226)
..++...|+||.+.+.+| +.++|||.||..|+..|+.. .....||.|+.++..
T Consensus 15 ~~~~~~~C~IC~~~~~~p-~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecv_A 15 NVKEEVTCPICLELLTQP-LSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQP 71 (85)
T ss_dssp CCCCCCCCTTTCSCCSSC-BCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred HccCCCCCCCCCcccCCc-eeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence 356778999999999999 67899999999999999875 236789999998873
No 20
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.18 E-value=5.1e-12 Score=93.57 Aligned_cols=53 Identities=26% Similarity=0.636 Sum_probs=45.7
Q ss_pred CCCcCcccccccCCCCCCCCeecCCCCcccHHHHHHHHhcCCCCCCCCCCccccc
Q 027227 158 SSEEDVTTCPICQASPTTPFLALPCQHRYCYYCLRTRCAASPSFRCSRCNEPVIA 212 (226)
Q Consensus 158 ~~~~~~~~C~iC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 212 (226)
....++..|+||.+.+.+| +.++|||.||..|+..|+.. ....||.||.++..
T Consensus 10 ~~~~~~~~C~iC~~~~~~p-~~~~CgH~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 10 IPSLSECQCGICMEILVEP-VTLPCNHTLCKPCFQSTVEK-ASLCCPFCRRRVSS 62 (115)
T ss_dssp CCCHHHHBCTTTCSBCSSC-EECTTSCEECHHHHCCCCCT-TTSBCTTTCCBCHH
T ss_pred cCCCCCCCCccCCcccCce-eEcCCCCHHhHHHHHHHHhH-CcCCCCCCCcccCc
Confidence 3456789999999999999 78899999999999998864 35789999999864
No 21
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.18 E-value=2.3e-11 Score=85.44 Aligned_cols=51 Identities=14% Similarity=0.031 Sum_probs=45.2
Q ss_pred CCcCcccccccCCCCCCCCeecCCCCcccHHHHHHHHhcCCCCCCCCCCccccc
Q 027227 159 SEEDVTTCPICQASPTTPFLALPCQHRYCYYCLRTRCAASPSFRCSRCNEPVIA 212 (226)
Q Consensus 159 ~~~~~~~C~iC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 212 (226)
...++..||||++.+.+| ++++|||+||..||..|+.. ...||.|+.++..
T Consensus 10 ~~p~~~~CpI~~~~m~dP-V~~~cGhtf~r~~I~~~l~~--~~~cP~~~~~l~~ 60 (85)
T 2kr4_A 10 DAPDEFRDPLMDTLMTDP-VRLPSGTVMDRSIILRHLLN--SPTDPFNRQMLTE 60 (85)
T ss_dssp TCCTTTBCTTTCSBCSSE-EECTTSCEEEHHHHHHHHHH--CSBCTTTCCBCCG
T ss_pred cCchheECcccCchhcCC-eECCCCCEECHHHHHHHHhc--CCCCCCCcCCCCh
Confidence 345789999999999999 78999999999999999985 4689999998863
No 22
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.18 E-value=1.5e-11 Score=82.26 Aligned_cols=52 Identities=23% Similarity=0.623 Sum_probs=43.4
Q ss_pred CCCcCcccccccCCCCCCCC------eecCCCCcccHHHHHHHHhcCCCCCCCCCCcccc
Q 027227 158 SSEEDVTTCPICQASPTTPF------LALPCQHRYCYYCLRTRCAASPSFRCSRCNEPVI 211 (226)
Q Consensus 158 ~~~~~~~~C~iC~~~~~~p~------~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 211 (226)
....+...|+||++.+.+|. +.++|||.||..|+..|+.. ...||.||.++.
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~--~~~CP~Cr~~~~ 67 (69)
T 2ea6_A 10 LRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN--ANTCPTCRKKIN 67 (69)
T ss_dssp CCTTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHH--CSSCTTTCCCCC
T ss_pred cCCCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHc--CCCCCCCCCccC
Confidence 34567889999999887652 56899999999999999976 468999999875
No 23
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.15 E-value=5.5e-11 Score=81.75 Aligned_cols=54 Identities=19% Similarity=0.445 Sum_probs=43.7
Q ss_pred CCCcCcccccccCCCCCCCC--eecCCCCcccHHHHHHHHhcCCCCCCCCCCcccccc
Q 027227 158 SSEEDVTTCPICQASPTTPF--LALPCQHRYCYYCLRTRCAASPSFRCSRCNEPVIAM 213 (226)
Q Consensus 158 ~~~~~~~~C~iC~~~~~~p~--~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~ 213 (226)
....++..|+||++.+.++. ..++|||.||..||..|+.. ...||.||+++..-
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~--~~~CP~Cr~~~~~~ 65 (78)
T 2ect_A 10 EHVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQ--HDSCPVCRKSLTGQ 65 (78)
T ss_dssp TTSSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTT--TCSCTTTCCCCCCS
T ss_pred ccCCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHc--CCcCcCcCCccCCc
Confidence 34566789999999887652 34699999999999999965 46899999998743
No 24
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.15 E-value=2.5e-11 Score=88.88 Aligned_cols=50 Identities=20% Similarity=0.477 Sum_probs=43.8
Q ss_pred cCcccccccCCCCCCCCeec-CCCCcccHHHHHHHHhcCCCCCCCCCCcccccc
Q 027227 161 EDVTTCPICQASPTTPFLAL-PCQHRYCYYCLRTRCAASPSFRCSRCNEPVIAM 213 (226)
Q Consensus 161 ~~~~~C~iC~~~~~~p~~~~-~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~ 213 (226)
+++..|+||.+.+.+| +.+ +|||.||..|+..|+.. ...||.|+.++...
T Consensus 13 ~~~~~C~IC~~~~~~p-~~~~~CgH~fC~~Ci~~~~~~--~~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 13 NPHLMCVLCGGYFIDA-TTIIECLHSFCKTCIVRYLET--SKYCPICDVQVHKT 63 (108)
T ss_dssp GGGTBCTTTSSBCSSE-EEETTTCCEEEHHHHHHHHTS--CSBCTTTCCBSCSS
T ss_pred CCcCCCccCChHHhCc-CEeCCCCChhhHHHHHHHHHh--CCcCcCCCcccccc
Confidence 5678999999999999 565 99999999999999975 47899999998753
No 25
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.14 E-value=1.3e-11 Score=83.15 Aligned_cols=51 Identities=24% Similarity=0.645 Sum_probs=43.0
Q ss_pred CcCcccccccCCCCCCCC------eecCCCCcccHHHHHHHHhcCCCCCCCCCCccccc
Q 027227 160 EEDVTTCPICQASPTTPF------LALPCQHRYCYYCLRTRCAASPSFRCSRCNEPVIA 212 (226)
Q Consensus 160 ~~~~~~C~iC~~~~~~p~------~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 212 (226)
.+++..|+||.+.+.+|. +.++|||.||..|+..|+.. ...||.||+++..
T Consensus 7 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~--~~~CP~Cr~~~~~ 63 (71)
T 3ng2_A 7 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN--ANTCPTCRKKINH 63 (71)
T ss_dssp CTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHH--CSBCTTTCCBCCC
T ss_pred CCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHc--CCCCCCCCCccCh
Confidence 456789999999887662 57899999999999999976 3589999998874
No 26
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.13 E-value=1.8e-11 Score=79.21 Aligned_cols=45 Identities=33% Similarity=0.766 Sum_probs=39.5
Q ss_pred cCcccccccCCCCCCCCeecCCCCcccHHHHHHHHhcCCCCCCCCCCcccc
Q 027227 161 EDVTTCPICQASPTTPFLALPCQHRYCYYCLRTRCAASPSFRCSRCNEPVI 211 (226)
Q Consensus 161 ~~~~~C~iC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 211 (226)
.+...|+||.+.+.+| +.++|||.||..|+.. ....||.||+++.
T Consensus 4 ~~~~~C~IC~~~~~~p-~~l~CgH~fC~~Ci~~-----~~~~CP~Cr~~~~ 48 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCP-KLLPCLHTLCSGCLEA-----SGMQCPICQAPWP 48 (56)
T ss_dssp CCCSSCSSSCSSCBCC-SCSTTSCCSBTTTCSS-----SSSSCSSCCSSSS
T ss_pred ccCCCceEeCCccCCe-EEcCCCCcccHHHHcc-----CCCCCCcCCcEee
Confidence 5678999999999999 7899999999999865 2468999999887
No 27
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.13 E-value=2.9e-11 Score=87.60 Aligned_cols=51 Identities=14% Similarity=0.045 Sum_probs=45.2
Q ss_pred CCcCcccccccCCCCCCCCeecCCCCcccHHHHHHHHhcCCCCCCCCCCccccc
Q 027227 159 SEEDVTTCPICQASPTTPFLALPCQHRYCYYCLRTRCAASPSFRCSRCNEPVIA 212 (226)
Q Consensus 159 ~~~~~~~C~iC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 212 (226)
...++..||||.+.+.+| ++++|||+||..||..|+.. ...||.|+.++..
T Consensus 25 ~~p~~~~CpI~~~~m~dP-V~~~cGhtf~r~~I~~~l~~--~~~cP~~~~~l~~ 75 (100)
T 2kre_A 25 DAPDEFRDPLMDTLMTDP-VRLPSGTIMDRSIILRHLLN--SPTDPFNRQTLTE 75 (100)
T ss_dssp SCSTTTBCTTTCSBCSSE-EEETTTEEEEHHHHHHHTTS--CSBCSSSCCBCCT
T ss_pred cCcHhhCCcCccCcccCC-eECCCCCEEchHHHHHHHHc--CCCCCCCCCCCCh
Confidence 346789999999999999 78899999999999999974 5789999998863
No 28
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.13 E-value=4.1e-11 Score=76.73 Aligned_cols=48 Identities=29% Similarity=0.672 Sum_probs=41.0
Q ss_pred cCcccccccCCCCCC----CCeecCCCCcccHHHHHHHHhcCCCCCCCCCCcccc
Q 027227 161 EDVTTCPICQASPTT----PFLALPCQHRYCYYCLRTRCAASPSFRCSRCNEPVI 211 (226)
Q Consensus 161 ~~~~~C~iC~~~~~~----p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 211 (226)
.++..|+||++.+.+ + +.++|||.||..|+..|+... ..||.||+++.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~-~~~~CgH~fc~~Ci~~~~~~~--~~CP~Cr~~~~ 54 (55)
T 2ecm_A 3 SGSSGCPICLEDIHTSRVVA-HVLPCGHLLHRTCYEEMLKEG--YRCPLCSGPSS 54 (55)
T ss_dssp SCCCSCTTTCCCCCTTTSCE-EECTTSCEEETTHHHHHHHHT--CCCTTSCCSSC
T ss_pred CCCCcCcccChhhcCCCcCe-EecCCCCcccHHHHHHHHHcC--CcCCCCCCcCC
Confidence 346789999998865 5 789999999999999999863 68999998875
No 29
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.12 E-value=2.2e-11 Score=94.49 Aligned_cols=51 Identities=27% Similarity=0.574 Sum_probs=44.5
Q ss_pred cCcccccccCCCCCCCCeecCCCCcccHHHHHHHHhcCCCCCCCCCCcccccc
Q 027227 161 EDVTTCPICQASPTTPFLALPCQHRYCYYCLRTRCAASPSFRCSRCNEPVIAM 213 (226)
Q Consensus 161 ~~~~~C~iC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~ 213 (226)
++...|+||.+.+.+| +.++|||.||..||..|+.. ....||.||.++..-
T Consensus 76 ~~~~~C~IC~~~~~~p-v~~~CgH~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 76 EQSFMCVCCQELVYQP-VTTECFHNVCKDCLQRSFKA-QVFSCPACRHDLGQN 126 (150)
T ss_dssp HHHTBCTTTSSBCSSE-EECTTSCEEEHHHHHHHHHT-TCCBCTTTCCBCCTT
T ss_pred ccCCEeecCChhhcCC-EEcCCCCchhHHHHHHHHHh-CCCcCCCCCccCCCC
Confidence 4568999999999999 78999999999999999975 346899999998743
No 30
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.12 E-value=3.2e-11 Score=80.14 Aligned_cols=50 Identities=24% Similarity=0.586 Sum_probs=41.2
Q ss_pred CcccccccCC-CCCCCC---eecCCCCcccHHHHHHHHhcCCCCCCCCCCccccc
Q 027227 162 DVTTCPICQA-SPTTPF---LALPCQHRYCYYCLRTRCAASPSFRCSRCNEPVIA 212 (226)
Q Consensus 162 ~~~~C~iC~~-~~~~p~---~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 212 (226)
++..|+||.+ .+.+|. +.++|||+||..|+..|+.. ....||.||+++..
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~ 55 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVR-GAGNCPECGTPLRK 55 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHT-TSSSCTTTCCCCSS
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHc-CCCcCCCCCCcccc
Confidence 4578999999 777773 35799999999999999765 35689999998864
No 31
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.12 E-value=5.2e-11 Score=76.29 Aligned_cols=48 Identities=25% Similarity=0.582 Sum_probs=40.3
Q ss_pred cCcccccccCCCCCC---CCeecC-CCCcccHHHHHHHHhcCCCCCCCCCCcccc
Q 027227 161 EDVTTCPICQASPTT---PFLALP-CQHRYCYYCLRTRCAASPSFRCSRCNEPVI 211 (226)
Q Consensus 161 ~~~~~C~iC~~~~~~---p~~~~~-CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 211 (226)
+++..|+||++.+.+ + ..++ |||.||..|+..|++. ...||.||+++.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~-~~~~~C~H~f~~~Ci~~w~~~--~~~CP~Cr~~~~ 54 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEA-RFLPRCGHGFHAECVDMWLGS--HSTCPLCRLTVV 54 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCC-EECSSSCCEECTTHHHHTTTT--CCSCSSSCCCSC
T ss_pred CCCCcCccCCccccCCCce-EECCCCCCcccHHHHHHHHHc--CCcCcCCCCEeE
Confidence 466789999998876 6 5666 9999999999999965 568999998764
No 32
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.12 E-value=2.6e-11 Score=87.30 Aligned_cols=49 Identities=27% Similarity=0.681 Sum_probs=42.8
Q ss_pred cCcccccccCCCCCCCCeec-CCCCcccHHHHHHHHhcCCCCCCCCCCccccc
Q 027227 161 EDVTTCPICQASPTTPFLAL-PCQHRYCYYCLRTRCAASPSFRCSRCNEPVIA 212 (226)
Q Consensus 161 ~~~~~C~iC~~~~~~p~~~~-~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 212 (226)
++...|+||.+.+.+| +.+ +|||.||..|+..|+.. ...||.|+.++..
T Consensus 20 ~~~~~C~IC~~~~~~p-~~~~~CgH~fC~~Ci~~~~~~--~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 20 DDLLRCGICFEYFNIA-MIIPQCSHNYCSLCIRKFLSY--KTQCPTCCVTVTE 69 (99)
T ss_dssp HHHTBCTTTCSBCSSE-EECTTTCCEEEHHHHHHHHTT--CCBCTTTCCBCCG
T ss_pred CCCCCcccCChhhCCc-CEECCCCCHhhHHHHHHHHHC--CCCCCCCCCcCCh
Confidence 4568999999999999 566 89999999999999974 4689999998874
No 33
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.10 E-value=9.6e-11 Score=84.50 Aligned_cols=51 Identities=14% Similarity=0.069 Sum_probs=45.2
Q ss_pred CCcCcccccccCCCCCCCCeecCCC-CcccHHHHHHHHhcCCCCCCCCCCccccc
Q 027227 159 SEEDVTTCPICQASPTTPFLALPCQ-HRYCYYCLRTRCAASPSFRCSRCNEPVIA 212 (226)
Q Consensus 159 ~~~~~~~C~iC~~~~~~p~~~~~Cg-H~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 212 (226)
...+++.||||++.+.+| ++++|| |+||..||..|+.. ...||.|+.++..
T Consensus 18 ~~p~~~~CpI~~~~m~dP-V~~~cG~htf~r~cI~~~l~~--~~~cP~~~~~l~~ 69 (98)
T 1wgm_A 18 DACDEFLDPIMSTLMCDP-VVLPSSRVTVDRSTIARHLLS--DQTDPFNRSPLTM 69 (98)
T ss_dssp SCCTTTBCTTTCSBCSSE-EECTTTCCEEEHHHHHHHTTT--SCBCTTTCSBCCT
T ss_pred cCcHhcCCcCccccccCC-eECCCCCeEECHHHHHHHHHh--CCCCCCCCCCCCh
Confidence 345789999999999999 789999 99999999999975 4689999998863
No 34
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.10 E-value=4.1e-11 Score=87.95 Aligned_cols=50 Identities=22% Similarity=0.697 Sum_probs=43.0
Q ss_pred CcccccccCCCCCCCCeecCCCCcccHHHHHHHHhcC-CCCCCCCCCccccc
Q 027227 162 DVTTCPICQASPTTPFLALPCQHRYCYYCLRTRCAAS-PSFRCSRCNEPVIA 212 (226)
Q Consensus 162 ~~~~C~iC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~-~~~~CP~Cr~~~~~ 212 (226)
+...|+||.+.+.+| +.++|||.||..|+..|+... ....||.|+.++..
T Consensus 20 ~~~~C~IC~~~~~~p-~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 70 (112)
T 1jm7_A 20 KILECPICLELIKEP-VSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITK 70 (112)
T ss_dssp HHTSCSSSCCCCSSC-CBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCT
T ss_pred CCCCCcccChhhcCe-EECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCH
Confidence 456899999999999 678999999999999999753 24689999998874
No 35
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.09 E-value=1.3e-10 Score=77.87 Aligned_cols=51 Identities=24% Similarity=0.529 Sum_probs=41.7
Q ss_pred CCcCcccccccCCCCC---CCCeecCCCCcccHHHHHHHHhcCCCCCCCCCCccccc
Q 027227 159 SEEDVTTCPICQASPT---TPFLALPCQHRYCYYCLRTRCAASPSFRCSRCNEPVIA 212 (226)
Q Consensus 159 ~~~~~~~C~iC~~~~~---~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 212 (226)
...++..|+||++.+. .+ +.++|||.||..|+..|+.. ...||.||.++..
T Consensus 10 ~~~~~~~C~IC~~~~~~~~~~-~~~~C~H~fc~~Ci~~~~~~--~~~CP~Cr~~~~~ 63 (69)
T 2kiz_A 10 EEDTEEKCTICLSILEEGEDV-RRLPCMHLFHQVCVDQWLIT--NKKCPICRVDIEA 63 (69)
T ss_dssp STTCCCSBTTTTBCCCSSSCE-EECTTSCEEEHHHHHHHHHH--CSBCTTTCSBSCS
T ss_pred cCCCCCCCeeCCccccCCCcE-EEeCCCCHHHHHHHHHHHHc--CCCCcCcCccccC
Confidence 3456789999998764 34 67899999999999999976 3579999998863
No 36
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.08 E-value=5.4e-11 Score=88.49 Aligned_cols=52 Identities=27% Similarity=0.645 Sum_probs=45.1
Q ss_pred CCcCcccccccCCCCCCCCeecCCCCcccHHHHHHHHhcCCCCCCCCCCccccc
Q 027227 159 SEEDVTTCPICQASPTTPFLALPCQHRYCYYCLRTRCAASPSFRCSRCNEPVIA 212 (226)
Q Consensus 159 ~~~~~~~C~iC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 212 (226)
..++...|+||.+.+.+| +.++|||.||..|+..|+... ...||.||.++..
T Consensus 14 ~~~~~~~C~IC~~~~~~p-~~~~CgH~fC~~Ci~~~~~~~-~~~CP~Cr~~~~~ 65 (118)
T 3hct_A 14 PLESKYECPICLMALREA-VQTPCGHRFCKACIIKSIRDA-GHKCPVDNEILLE 65 (118)
T ss_dssp CCCGGGBCTTTCSBCSSE-EECTTSCEEEHHHHHHHHHHH-CSBCTTTCCBCCG
T ss_pred CCCCCCCCCcCChhhcCe-EECCcCChhhHHHHHHHHhhC-CCCCCCCCCCcCH
Confidence 456778999999999999 788999999999999999753 3489999998874
No 37
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.08 E-value=4.5e-11 Score=93.95 Aligned_cols=52 Identities=23% Similarity=0.614 Sum_probs=44.3
Q ss_pred CcCcccccccCCCCCCCCeec-CCCCcccHHHHHHHHhcCCCCCCCCCCcccccc
Q 027227 160 EEDVTTCPICQASPTTPFLAL-PCQHRYCYYCLRTRCAASPSFRCSRCNEPVIAM 213 (226)
Q Consensus 160 ~~~~~~C~iC~~~~~~p~~~~-~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~ 213 (226)
..+...|+||.+.+.+| +.+ +|||.||..||..|+.. ....||.|+.++...
T Consensus 51 ~~~~~~C~IC~~~~~~p-~~~~~CgH~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~~ 103 (165)
T 2ckl_B 51 LHSELMCPICLDMLKNT-MTTKECLHRFCADCIITALRS-GNKECPTCRKKLVSK 103 (165)
T ss_dssp CHHHHBCTTTSSBCSSE-EEETTTCCEEEHHHHHHHHHT-TCCBCTTTCCBCCSG
T ss_pred CCCCCCCcccChHhhCc-CEeCCCCChhHHHHHHHHHHh-CcCCCCCCCCcCCCc
Confidence 45678999999999999 555 99999999999999975 357899999998643
No 38
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.08 E-value=5.2e-11 Score=80.17 Aligned_cols=53 Identities=25% Similarity=0.602 Sum_probs=44.8
Q ss_pred CcCcccccccCCCCCCCCeecCCCCcccHHHHHHHHhcCCCCCCCCCCccccccccc
Q 027227 160 EEDVTTCPICQASPTTPFLALPCQHRYCYYCLRTRCAASPSFRCSRCNEPVIAMQRH 216 (226)
Q Consensus 160 ~~~~~~C~iC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~ 216 (226)
..+...|+||++.+.+ +.++|||.||..|+..|+.. ...||.||.++...+..
T Consensus 12 ~~~~~~C~IC~~~~~~--~~~~CgH~fc~~Ci~~~~~~--~~~CP~Cr~~~~~~~~~ 64 (70)
T 2ecn_A 12 LTDEEECCICMDGRAD--LILPCAHSFCQKCIDKWSDR--HRNCPICRLQMTGANES 64 (70)
T ss_dssp CCCCCCCSSSCCSCCS--EEETTTEEECHHHHHHSSCC--CSSCHHHHHCTTCCCCC
T ss_pred CCCCCCCeeCCcCccC--cccCCCCcccHHHHHHHHHC--cCcCCCcCCcccCCCcc
Confidence 4567899999999888 57899999999999999863 57899999998865544
No 39
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.07 E-value=3.2e-11 Score=79.48 Aligned_cols=49 Identities=24% Similarity=0.681 Sum_probs=41.4
Q ss_pred CcccccccCCCCCCCC------eecCCCCcccHHHHHHHHhcCCCCCCCCCCccccc
Q 027227 162 DVTTCPICQASPTTPF------LALPCQHRYCYYCLRTRCAASPSFRCSRCNEPVIA 212 (226)
Q Consensus 162 ~~~~C~iC~~~~~~p~------~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 212 (226)
++..|+||.+.+.+|. +.++|||.||..|+..|+.. ...||.||+++..
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~--~~~CP~Cr~~~~~ 56 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN--ANTCPTCRKKINH 56 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHH--CSBCTTTCCBCTT
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHc--CCCCCCCCccCCc
Confidence 4578999999887651 57899999999999999976 4689999998874
No 40
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.06 E-value=1.9e-10 Score=79.46 Aligned_cols=54 Identities=22% Similarity=0.554 Sum_probs=42.3
Q ss_pred CCcCcccccccCCCCC--CCCeecC--CCCcccHHHHHHHHhcCCCCCCCCCCccccccc
Q 027227 159 SEEDVTTCPICQASPT--TPFLALP--CQHRYCYYCLRTRCAASPSFRCSRCNEPVIAMQ 214 (226)
Q Consensus 159 ~~~~~~~C~iC~~~~~--~p~~~~~--CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~ 214 (226)
..+++..||||++.+. ++ ...+ |||.||..|+..++.. ....||.||+++..-.
T Consensus 7 ~~~~~~~CpICle~~~~~d~-~~~p~~CGH~fC~~Cl~~~~~~-~~~~CP~CR~~~~~~~ 64 (78)
T 1e4u_A 7 AKEDPVECPLCMEPLEIDDI-NFFPCTCGYQICRFCWHRIRTD-ENGLCPACRKPYPEDP 64 (78)
T ss_dssp CCCCCCBCTTTCCBCCTTTT-TCCSSTTSCCCCHHHHHHHTTS-SCSBCTTTCCBCSSCS
T ss_pred ccccCCcCCccCccCccccc-cccccCCCCCcCHHHHHHHHhc-CCCCCCCCCCccCCCc
Confidence 3467889999999774 34 3444 9999999999998754 4578999999987533
No 41
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.05 E-value=8.1e-11 Score=83.59 Aligned_cols=49 Identities=24% Similarity=0.485 Sum_probs=41.7
Q ss_pred CcCcccccccCCCCCC---CCeecCCCCcccHHHHHHHHhcCCCCCCCCCCcccc
Q 027227 160 EEDVTTCPICQASPTT---PFLALPCQHRYCYYCLRTRCAASPSFRCSRCNEPVI 211 (226)
Q Consensus 160 ~~~~~~C~iC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 211 (226)
.+++..|+||++.+.. + ..++|||.||..||..|+.. ...||.||.++.
T Consensus 37 ~~~~~~C~IC~~~~~~~~~~-~~l~C~H~Fh~~Ci~~wl~~--~~~CP~Cr~~~~ 88 (91)
T 2l0b_A 37 VGQEMCCPICCSEYVKGDVA-TELPCHHYFHKPCVSIWLQK--SGTCPVCRCMFP 88 (91)
T ss_dssp SSSCSEETTTTEECCTTCEE-EEETTTEEEEHHHHHHHHTT--TCBCTTTCCBSS
T ss_pred cCCCCCCcccChhhcCCCcE-EecCCCChHHHHHHHHHHHc--CCcCcCcCccCC
Confidence 4567899999988776 5 66899999999999999975 468999998876
No 42
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.04 E-value=9.3e-11 Score=86.81 Aligned_cols=51 Identities=22% Similarity=0.590 Sum_probs=44.4
Q ss_pred CcCcccccccCCCCCCCCeecCCCCcccHHHHHHHHhcCCCCCCCCCCccccc
Q 027227 160 EEDVTTCPICQASPTTPFLALPCQHRYCYYCLRTRCAASPSFRCSRCNEPVIA 212 (226)
Q Consensus 160 ~~~~~~C~iC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 212 (226)
..++..|+||.+.+.+| +.++|||.||..|+..|+... ...||.|+.++..
T Consensus 20 ~~~~~~C~IC~~~~~~p-~~~~CgH~fC~~Ci~~~~~~~-~~~CP~Cr~~~~~ 70 (116)
T 1rmd_A 20 FVKSISCQICEHILADP-VETSCKHLFCRICILRCLKVM-GSYCPSCRYPCFP 70 (116)
T ss_dssp HHHHTBCTTTCSBCSSE-EECTTSCEEEHHHHHHHHHHT-CSBCTTTCCBCCG
T ss_pred ccCCCCCCCCCcHhcCc-EEcCCCCcccHHHHHHHHhHC-cCcCCCCCCCCCH
Confidence 34578999999999999 789999999999999999763 4689999999874
No 43
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.03 E-value=1.4e-10 Score=82.92 Aligned_cols=49 Identities=20% Similarity=0.415 Sum_probs=41.5
Q ss_pred CcCcccccccCCCCCCCCeecC-CCCcccHHHHHHHHhcC----CCCCCCC--CCcc
Q 027227 160 EEDVTTCPICQASPTTPFLALP-CQHRYCYYCLRTRCAAS----PSFRCSR--CNEP 209 (226)
Q Consensus 160 ~~~~~~C~iC~~~~~~p~~~~~-CgH~fC~~Ci~~~~~~~----~~~~CP~--Cr~~ 209 (226)
..+++.||||++.+.+| ++++ |||+||..||..|+... ....||+ |+..
T Consensus 4 ~~~~~~CPI~~~~~~dP-V~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 4 GSSGFTCPITKEEMKKP-VKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp CSSCCBCTTTCSBCSSE-EEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred CCcEeECcCcCchhcCC-EEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 45678999999999999 7775 99999999999999753 2468999 8755
No 44
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.03 E-value=1.4e-10 Score=97.85 Aligned_cols=52 Identities=12% Similarity=0.001 Sum_probs=44.8
Q ss_pred CCcCcccccccCCCCCCCCeecCCCCcccHHHHHHHHhcCCCCCCCCCCccccc
Q 027227 159 SEEDVTTCPICQASPTTPFLALPCQHRYCYYCLRTRCAASPSFRCSRCNEPVIA 212 (226)
Q Consensus 159 ~~~~~~~C~iC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 212 (226)
...+...||||.+.+.+| ++++|||+||..||..|+...+ ..||+|+.++..
T Consensus 204 ~~~~~~~c~i~~~~~~dP-v~~~~gh~f~~~~i~~~~~~~~-~~cP~~~~~~~~ 255 (281)
T 2c2l_A 204 DIPDYLCGKISFELMREP-CITPSGITYDRKDIEEHLQRVG-HFNPVTRSPLTQ 255 (281)
T ss_dssp CCCSTTBCTTTCSBCSSE-EECSSCCEEETTHHHHHHHHTC-SSCTTTCCCCCG
T ss_pred CCCcccCCcCcCCHhcCC-eECCCCCEECHHHHHHHHHHCC-CCCcCCCCCCch
Confidence 345789999999999999 7899999999999999997643 349999998863
No 45
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.02 E-value=1.3e-10 Score=79.34 Aligned_cols=51 Identities=22% Similarity=0.522 Sum_probs=42.0
Q ss_pred CcCcccccccCCCCCCC--CeecCCCCcccHHHHHHHHhcCCCCCCCCCCccccc
Q 027227 160 EEDVTTCPICQASPTTP--FLALPCQHRYCYYCLRTRCAASPSFRCSRCNEPVIA 212 (226)
Q Consensus 160 ~~~~~~C~iC~~~~~~p--~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 212 (226)
..++..|+||++.+..+ ...++|||.||..|+..|+.. ...||+||+++..
T Consensus 20 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~--~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 20 QSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKA--NRTCPICRADSGP 72 (75)
T ss_dssp SSSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHH--CSSCTTTCCCCCC
T ss_pred cCCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHc--CCcCcCcCCcCCC
Confidence 45678999999887765 245789999999999999976 4589999998763
No 46
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.01 E-value=3e-10 Score=83.69 Aligned_cols=50 Identities=20% Similarity=0.435 Sum_probs=40.2
Q ss_pred cccccccCCCCCCCC-----------------eecCCCCcccHHHHHHHHhc---CCCCCCCCCCccccc
Q 027227 163 VTTCPICQASPTTPF-----------------LALPCQHRYCYYCLRTRCAA---SPSFRCSRCNEPVIA 212 (226)
Q Consensus 163 ~~~C~iC~~~~~~p~-----------------~~~~CgH~fC~~Ci~~~~~~---~~~~~CP~Cr~~~~~ 212 (226)
+..|+||++.+..|. ..++|||.||..||..|+.. .....||+||..+..
T Consensus 25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~ 94 (114)
T 1v87_A 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE 94 (114)
T ss_dssp SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred CCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence 468999999887651 16899999999999999953 235689999998864
No 47
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.00 E-value=7.4e-11 Score=87.61 Aligned_cols=46 Identities=26% Similarity=0.696 Sum_probs=40.8
Q ss_pred cCcccccccCCCCCCCCeec-CCCCcccHHHHHHHHhcCCCCCCCCCCcccc
Q 027227 161 EDVTTCPICQASPTTPFLAL-PCQHRYCYYCLRTRCAASPSFRCSRCNEPVI 211 (226)
Q Consensus 161 ~~~~~C~iC~~~~~~p~~~~-~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 211 (226)
.+...|+||.+.+.+| +++ +|||.||..||..|+. ..||.|+.++.
T Consensus 20 ~~~~~C~IC~~~~~~p-v~~~~CgH~fC~~Ci~~~~~----~~CP~Cr~~~~ 66 (117)
T 1jm7_B 20 EKLLRCSRCTNILREP-VCLGGCEHIFCSNCVSDCIG----TGCPVCYTPAW 66 (117)
T ss_dssp HHTTSCSSSCSCCSSC-BCCCSSSCCBCTTTGGGGTT----TBCSSSCCBCS
T ss_pred hhCCCCCCCChHhhCc-cEeCCCCCHHHHHHHHHHhc----CCCcCCCCcCc
Confidence 4568999999999999 677 9999999999999885 58999999874
No 48
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.00 E-value=5.6e-11 Score=91.29 Aligned_cols=51 Identities=27% Similarity=0.658 Sum_probs=44.1
Q ss_pred CCcCcccccccCCCCCCCCeecCCCCcccHHHHHHHHhcCCCCCCCCCCcccc
Q 027227 159 SEEDVTTCPICQASPTTPFLALPCQHRYCYYCLRTRCAASPSFRCSRCNEPVI 211 (226)
Q Consensus 159 ~~~~~~~C~iC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 211 (226)
..+++..|+||.+.+.+| +.++|||.||..||..|+.. ....||.||.++.
T Consensus 27 ~l~~~~~C~IC~~~~~~p-v~~~CgH~FC~~Ci~~~~~~-~~~~CP~Cr~~~~ 77 (141)
T 3knv_A 27 KLEAKYLCSACRNVLRRP-FQAQCGHRYCSFCLASILSS-GPQNCAACVHEGI 77 (141)
T ss_dssp GCCGGGBCTTTCSBCSSE-EECTTSCEEEHHHHHHHGGG-SCEECHHHHHTTC
T ss_pred cCCcCcCCCCCChhhcCc-EECCCCCccCHHHHHHHHhc-CCCCCCCCCCccc
Confidence 346789999999999999 78999999999999999975 3458999999763
No 49
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.98 E-value=3.1e-10 Score=90.28 Aligned_cols=51 Identities=12% Similarity=-0.012 Sum_probs=44.7
Q ss_pred CcCcccccccCCCCCCCCeecCCCCcccHHHHHHHHhcCCCCCCCCCCccccc
Q 027227 160 EEDVTTCPICQASPTTPFLALPCQHRYCYYCLRTRCAASPSFRCSRCNEPVIA 212 (226)
Q Consensus 160 ~~~~~~C~iC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 212 (226)
..+...||||.+.+.+| ++++|||+||..||..|+...+ ..||.|+.++..
T Consensus 103 ip~~f~CPI~~elm~DP-V~~~~Ghtfer~~I~~~l~~~~-~tcP~t~~~l~~ 153 (179)
T 2f42_A 103 IPDYLCGKISFELMREP-CITPSGITYDRKDIEEHLQRVG-HFDPVTRSPLTQ 153 (179)
T ss_dssp CCGGGBCTTTCSBCSSE-EECTTSCEEEHHHHHHHHHHTC-SBCTTTCCBCCG
T ss_pred CcHhhcccCccccCCCC-eECCCCCEECHHHHHHHHHhCC-CCCCCCcCCCCh
Confidence 46789999999999999 7899999999999999998643 369999998863
No 50
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.96 E-value=1.7e-09 Score=72.64 Aligned_cols=53 Identities=26% Similarity=0.545 Sum_probs=44.0
Q ss_pred CcCcccccccCCCCCCCCeecCCCCc-ccHHHHHHHHhcCCCCCCCCCCcccccccccccc
Q 027227 160 EEDVTTCPICQASPTTPFLALPCQHR-YCYYCLRTRCAASPSFRCSRCNEPVIAMQRHGVI 219 (226)
Q Consensus 160 ~~~~~~C~iC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~~ 219 (226)
.++...|+||++...++ +.++|||. ||..|+.. ...||.||.++....++-.+
T Consensus 12 ~~~~~~C~IC~~~~~~~-v~~pCgH~~~C~~C~~~------~~~CP~CR~~i~~~~~i~~~ 65 (68)
T 2ea5_A 12 EENSKDCVVCQNGTVNW-VLLPCRHTCLCDGCVKY------FQQCPMCRQFVQESFALSGP 65 (68)
T ss_dssp CCCSSCCSSSSSSCCCC-EETTTTBCCSCTTHHHH------CSSCTTTCCCCCCEECCCSS
T ss_pred CCCCCCCCCcCcCCCCE-EEECCCChhhhHHHHhc------CCCCCCCCcchhceEEeecC
Confidence 45678999999999999 88999999 99999973 25899999999876555443
No 51
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.95 E-value=1.6e-10 Score=78.92 Aligned_cols=48 Identities=23% Similarity=0.569 Sum_probs=41.4
Q ss_pred cCcccccccCCCCCCCCeecCCCCc-ccHHHHHHHHhcCCCCCCCCCCcccccccc
Q 027227 161 EDVTTCPICQASPTTPFLALPCQHR-YCYYCLRTRCAASPSFRCSRCNEPVIAMQR 215 (226)
Q Consensus 161 ~~~~~C~iC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~ 215 (226)
+++..|+||++.+.+| +.++|||. ||..|+..+ ..||.||+++....+
T Consensus 22 ~~~~~C~iC~~~~~~~-~~~pCgH~~~C~~C~~~~------~~CP~Cr~~i~~~~~ 70 (74)
T 4ic3_A 22 QEEKLCKICMDRNIAI-VFVPCGHLVTCKQCAEAV------DKCPMCYTVITFKQK 70 (74)
T ss_dssp HHHTBCTTTSSSBCCE-EEETTCCBCCCHHHHTTC------SBCTTTCCBCSEEEE
T ss_pred ccCCCCCCCCCCCCCE-EEcCCCChhHHHHhhhcC------ccCCCcCcCccCcEE
Confidence 4567999999999999 78999999 999999765 589999999876544
No 52
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.94 E-value=4.2e-10 Score=74.69 Aligned_cols=52 Identities=21% Similarity=0.554 Sum_probs=43.7
Q ss_pred cCcccccccCCCCCCCCeec--CCCCc-ccHHHHHHHHhcCCCCCCCCCCcccccccc
Q 027227 161 EDVTTCPICQASPTTPFLAL--PCQHR-YCYYCLRTRCAASPSFRCSRCNEPVIAMQR 215 (226)
Q Consensus 161 ~~~~~C~iC~~~~~~p~~~~--~CgH~-fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~ 215 (226)
+++..|+||++...++ +.+ +|||. ||+.|+..+... ...||.||+++....+
T Consensus 6 ~~~~~C~IC~~~~~~~-~~~~~pCgH~~~C~~C~~~~~~~--~~~CPiCR~~i~~~i~ 60 (64)
T 2vje_A 6 NAIEPCVICQGRPKNG-CIVHGKTGHLMACFTCAKKLKKR--NKPCPVCRQPIQMIVL 60 (64)
T ss_dssp GGGSCCTTTSSSCSCE-EEEETTEEEEEECHHHHHHHHHT--TCCCTTTCCCCCEEEE
T ss_pred CCcCCCCcCCCCCCCE-EEECCCCCChhhHHHHHHHHHHc--CCcCCCcCcchhceEe
Confidence 4567899999999999 666 99999 899999998864 4689999999876443
No 53
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.92 E-value=6.2e-10 Score=98.21 Aligned_cols=54 Identities=22% Similarity=0.458 Sum_probs=46.3
Q ss_pred cccccccCCCCCCCCeecCCCCcccHHHHHHHHhcCCCCCCCCCCccccccccccc
Q 027227 163 VTTCPICQASPTTPFLALPCQHRYCYYCLRTRCAASPSFRCSRCNEPVIAMQRHGV 218 (226)
Q Consensus 163 ~~~C~iC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~ 218 (226)
...|+||.+.+.+| +.++|||.||..|+..|... ....||.||.++.......+
T Consensus 332 ~~~C~ICle~~~~p-v~lpCGH~FC~~Ci~~wl~~-~~~~CP~CR~~i~~~~~i~v 385 (389)
T 2y1n_A 332 FQLCKICAENDKDV-KIEPCGHLMCTSCLTSWQES-EGQGCPFCRCEIKGTEPIVV 385 (389)
T ss_dssp SSBCTTTSSSBCCE-EEETTCCEECHHHHHHHHHH-TCSBCTTTCCBCCEEEECSC
T ss_pred CCCCCccCcCCCCe-EEeCCCChhhHHHHHHHHhc-CCCCCCCCCCccCCceeEec
Confidence 47999999999999 78999999999999999873 35689999999987655544
No 54
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.91 E-value=6e-10 Score=73.70 Aligned_cols=52 Identities=19% Similarity=0.510 Sum_probs=43.4
Q ss_pred cCcccccccCCCCCCCCeec--CCCCc-ccHHHHHHHHhcCCCCCCCCCCcccccccc
Q 027227 161 EDVTTCPICQASPTTPFLAL--PCQHR-YCYYCLRTRCAASPSFRCSRCNEPVIAMQR 215 (226)
Q Consensus 161 ~~~~~C~iC~~~~~~p~~~~--~CgH~-fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~ 215 (226)
+....|+||++...++ +.+ +|||. ||+.|+..+... ...||.||+++....+
T Consensus 5 ~~~~~C~IC~~~~~~~-~~~~~pCgH~~~C~~C~~~~~~~--~~~CPiCR~~i~~~i~ 59 (63)
T 2vje_B 5 NLLKPCSLCEKRPRDG-NIIHGRTGHLVTCFHCARRLKKA--GASCPICKKEIQLVIK 59 (63)
T ss_dssp GGGSBCTTTSSSBSCE-EEEETTEEEEEECHHHHHHHHHT--TCBCTTTCCBCCEEEE
T ss_pred CcCCCCcccCCcCCCe-EEEecCCCCHhHHHHHHHHHHHh--CCcCCCcCchhhceEE
Confidence 4567899999999998 666 99998 999999988864 4689999999875443
No 55
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.88 E-value=6.6e-10 Score=75.97 Aligned_cols=48 Identities=23% Similarity=0.575 Sum_probs=40.2
Q ss_pred cCcccccccCCCCCCCCeecCCCCc-ccHHHHHHHHhcCCCCCCCCCCcccccccc
Q 027227 161 EDVTTCPICQASPTTPFLALPCQHR-YCYYCLRTRCAASPSFRCSRCNEPVIAMQR 215 (226)
Q Consensus 161 ~~~~~C~iC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~ 215 (226)
+++..|+||++.+.+| +.++|||. ||..|+.. ...||.||.++....+
T Consensus 23 ~~~~~C~IC~~~~~~~-~~~pCgH~~~C~~C~~~------~~~CP~Cr~~i~~~~~ 71 (75)
T 2ecg_A 23 QEEKLCKICMDRNIAI-VFVPCGHLVTCKQCAEA------VDKCPMCYTVITFKQK 71 (75)
T ss_dssp HHHHSCSSSCSSCCCB-CCSSSCCCCBCHHHHHH------CSBCTTTCCBCCCCCB
T ss_pred CCCCCCCcCCCCCCCE-EEecCCCHHHHHHHhhC------CCCCccCCceecCcEE
Confidence 3467899999999999 78999999 99999953 2589999999876433
No 56
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.88 E-value=6e-10 Score=93.09 Aligned_cols=52 Identities=21% Similarity=0.377 Sum_probs=45.0
Q ss_pred CCcCcccccccCCCCCCCCee-cCCCCcccHHHHHHHHhcCCCCCCCC--CCcccc
Q 027227 159 SEEDVTTCPICQASPTTPFLA-LPCQHRYCYYCLRTRCAASPSFRCSR--CNEPVI 211 (226)
Q Consensus 159 ~~~~~~~C~iC~~~~~~p~~~-~~CgH~fC~~Ci~~~~~~~~~~~CP~--Cr~~~~ 211 (226)
....+..||||++.+.+| ++ +.|||+||..||..|+...+...||+ |++.+.
T Consensus 177 ~~~~el~CPIcl~~f~DP-Vts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~ 231 (267)
T 3htk_C 177 GGKIELTCPITCKPYEAP-LISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVS 231 (267)
T ss_dssp SSBCCSBCTTTSSBCSSE-EEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEEC
T ss_pred CCceeeECcCccCcccCC-eeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCc
Confidence 346789999999999999 55 59999999999999997655678999 998775
No 57
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.87 E-value=2.7e-09 Score=73.99 Aligned_cols=48 Identities=21% Similarity=0.556 Sum_probs=38.6
Q ss_pred CcccccccCCCCCC--------------CCeecCCCCcccHHHHHHHHhcCCCCCCCCCCcccc
Q 027227 162 DVTTCPICQASPTT--------------PFLALPCQHRYCYYCLRTRCAASPSFRCSRCNEPVI 211 (226)
Q Consensus 162 ~~~~C~iC~~~~~~--------------p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 211 (226)
++..|+||++.+.+ +.+..+|||.|+..||.+|+.. ...||+||+++.
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~--~~~CP~CR~~~~ 75 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQ--NNRCPLCQQDWV 75 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTT--CCBCTTTCCBCC
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHh--CCCCCCcCCCcc
Confidence 45679999988865 4233459999999999999976 458999999876
No 58
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.87 E-value=4.9e-10 Score=84.14 Aligned_cols=52 Identities=23% Similarity=0.636 Sum_probs=43.5
Q ss_pred cCcccccccCCCCCCCC------eecCCCCcccHHHHHHHHhcCCCCCCCCCCccccccc
Q 027227 161 EDVTTCPICQASPTTPF------LALPCQHRYCYYCLRTRCAASPSFRCSRCNEPVIAMQ 214 (226)
Q Consensus 161 ~~~~~C~iC~~~~~~p~------~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~ 214 (226)
.++..|+||++.+.+|+ +.++|||+||..||..|+.. ...||.|++++...+
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~--~~~CP~Cr~~~~~~~ 62 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN--ANTCPTCRKKINHKR 62 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTT--CSBCTTTCCBCTTTC
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHh--CCCCCCCCCcCcccc
Confidence 45789999999988772 57899999999999999975 458999999987533
No 59
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.86 E-value=1.2e-09 Score=86.21 Aligned_cols=52 Identities=27% Similarity=0.645 Sum_probs=45.0
Q ss_pred CCcCcccccccCCCCCCCCeecCCCCcccHHHHHHHHhcCCCCCCCCCCccccc
Q 027227 159 SEEDVTTCPICQASPTTPFLALPCQHRYCYYCLRTRCAASPSFRCSRCNEPVIA 212 (226)
Q Consensus 159 ~~~~~~~C~iC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 212 (226)
..++.+.|+||.+.+.+| +.++|||+||..|+..|+... ...||.||.++..
T Consensus 14 ~~~~~~~C~IC~~~~~~p-v~~~CgH~fC~~Ci~~~~~~~-~~~CP~Cr~~~~~ 65 (170)
T 3hcs_A 14 PLESKYECPICLMALREA-VQTPCGHRFCKACIIKSIRDA-GHKCPVDNEILLE 65 (170)
T ss_dssp CCCGGGBCTTTCSBCSSE-EECTTSCEEEHHHHHHHHHHH-CSBCTTTCCBCCG
T ss_pred CCCCCCCCCCCChhhcCc-EECCCCCHHHHHHHHHHHHhC-CCCCCCCccCcch
Confidence 356789999999999999 678999999999999998753 3489999998864
No 60
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.78 E-value=1.4e-09 Score=75.21 Aligned_cols=52 Identities=21% Similarity=0.464 Sum_probs=43.1
Q ss_pred cCcccccccCCCCCCCCeecCCCCc-ccHHHHHHHHhcCCCCCCCCCCcccccccccccc
Q 027227 161 EDVTTCPICQASPTTPFLALPCQHR-YCYYCLRTRCAASPSFRCSRCNEPVIAMQRHGVI 219 (226)
Q Consensus 161 ~~~~~C~iC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~~ 219 (226)
+++..|+||.+...+| +.++|||. ||..|+..+ ..||.||.++....+.-.+
T Consensus 16 ~~~~~C~IC~~~~~~~-v~~pCgH~~~C~~C~~~~------~~CP~Cr~~i~~~~~i~~p 68 (79)
T 2yho_A 16 KEAMLCMVCCEEEINS-TFCPCGHTVCCESCAAQL------QSCPVCRSRVEHVQHVYLP 68 (79)
T ss_dssp HHHTBCTTTSSSBCCE-EEETTCBCCBCHHHHTTC------SBCTTTCCBCCEEEECBCT
T ss_pred CCCCEeEEeCcccCcE-EEECCCCHHHHHHHHHhc------CcCCCCCchhhCeEEEEeC
Confidence 3457899999999999 78999999 999998643 3899999999876555443
No 61
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=98.75 E-value=7.2e-09 Score=75.64 Aligned_cols=48 Identities=19% Similarity=0.337 Sum_probs=39.7
Q ss_pred CcccccccCCCCCCC-----------------CeecCCCCcccHHHHHHHHhcCCCCCCCCCCcccc
Q 027227 162 DVTTCPICQASPTTP-----------------FLALPCQHRYCYYCLRTRCAASPSFRCSRCNEPVI 211 (226)
Q Consensus 162 ~~~~C~iC~~~~~~p-----------------~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 211 (226)
++..|+||++.+..+ .+.++|||.|+..||..|+.. ...||+||+++.
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~--~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT--RQVCPLDNREWE 100 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTT--CSBCSSSCSBCC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHc--CCcCcCCCCcce
Confidence 456899999887755 244799999999999999975 568999999865
No 62
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.64 E-value=1.7e-08 Score=66.29 Aligned_cols=49 Identities=16% Similarity=0.169 Sum_probs=41.8
Q ss_pred cccccccCCCCCCCCeec-CCCCcccHHHHHHHHhcCCCCCCCCCCccccccc
Q 027227 163 VTTCPICQASPTTPFLAL-PCQHRYCYYCLRTRCAASPSFRCSRCNEPVIAMQ 214 (226)
Q Consensus 163 ~~~C~iC~~~~~~p~~~~-~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~ 214 (226)
...|+||.+.+.+| +.+ +|||+||..||..|+..+ ..||++++++..-+
T Consensus 3 ~~~CpIs~~~m~dP-V~~~~sG~~yer~~I~~~l~~~--~~cP~t~~~L~~~~ 52 (61)
T 2bay_A 3 HMLCAISGKVPRRP-VLSPKSRTIFEKSLLEQYVKDT--GNDPITNEPLSIEE 52 (61)
T ss_dssp -CCCTTTCSCCSSE-EEETTTTEEEEHHHHHHHHHHH--SBCTTTCCBCCGGG
T ss_pred eEEecCCCCCCCCC-EEeCCCCcEEcHHHHHHHHHhC--CCCcCCcCCCChhh
Confidence 36899999999999 677 999999999999999863 46999999886433
No 63
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.62 E-value=7.8e-09 Score=77.48 Aligned_cols=51 Identities=24% Similarity=0.649 Sum_probs=42.5
Q ss_pred CcCcccccccCCCCCCC------CeecCCCCcccHHHHHHHHhcCCCCCCCCCCccccc
Q 027227 160 EEDVTTCPICQASPTTP------FLALPCQHRYCYYCLRTRCAASPSFRCSRCNEPVIA 212 (226)
Q Consensus 160 ~~~~~~C~iC~~~~~~p------~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 212 (226)
.++...|+||++.+.+| .+.++|||.||..|+.+|+.. ...||+||.++..
T Consensus 69 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~--~~~CP~Cr~~~~~ 125 (133)
T 4ap4_A 69 GSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN--ANTCPTCRKKINH 125 (133)
T ss_dssp SSSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHH--CSBCTTTCCBCCG
T ss_pred CCCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHc--CCCCCCCCCcCCh
Confidence 35678999999987664 156899999999999999976 4689999998874
No 64
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.56 E-value=1.7e-08 Score=71.83 Aligned_cols=47 Identities=19% Similarity=0.568 Sum_probs=38.3
Q ss_pred CcccccccCCCCCCCCeec---CCCCcccHHHHHHHHhcC------CCCCCCC--CCcc
Q 027227 162 DVTTCPICQASPTTPFLAL---PCQHRYCYYCLRTRCAAS------PSFRCSR--CNEP 209 (226)
Q Consensus 162 ~~~~C~iC~~~~~~p~~~~---~CgH~fC~~Ci~~~~~~~------~~~~CP~--Cr~~ 209 (226)
+...|+||.+.+..| ..+ +|||.||..|+..++..+ ....||. |+..
T Consensus 4 ~~~~C~IC~~~~~~~-~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGEYPVE-QMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCCCBGG-GEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCcccccc-cceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 467899999998887 343 799999999999998642 2358999 9988
No 65
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=98.53 E-value=4.1e-08 Score=69.81 Aligned_cols=54 Identities=22% Similarity=0.521 Sum_probs=44.8
Q ss_pred ccccccCCCCCCCCeecCCCCcccHHHHHHHHhcCCCCCCCCCCccccccccccc
Q 027227 164 TTCPICQASPTTPFLALPCQHRYCYYCLRTRCAASPSFRCSRCNEPVIAMQRHGV 218 (226)
Q Consensus 164 ~~C~iC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~ 218 (226)
..|+.|.-++..-..++||+|+||++|+..+.++ +...||.|+.++..++....
T Consensus 2 hfC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~-~~k~Cp~C~~~V~rVe~~~~ 55 (101)
T 3vk6_A 2 HFCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKK-GDKMCPGCSDPVQRIEQCTR 55 (101)
T ss_dssp CBCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHT-TCCBCTTTCCBCSEEEEEEG
T ss_pred eecCccCCCeEEEeeeccccccHHHHHHHHHHhc-cCCCCcCcCCeeeeeEEecc
Confidence 3589999887776678999999999999998765 35689999999998887543
No 66
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.53 E-value=1.5e-08 Score=88.57 Aligned_cols=47 Identities=21% Similarity=0.596 Sum_probs=41.0
Q ss_pred cCcccccccCCCCCCCCeecCCCCc-ccHHHHHHHHhcCCCCCCCCCCccccccc
Q 027227 161 EDVTTCPICQASPTTPFLALPCQHR-YCYYCLRTRCAASPSFRCSRCNEPVIAMQ 214 (226)
Q Consensus 161 ~~~~~C~iC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~ 214 (226)
+++..|+||++.+.+| +.++|||. ||..|+..+ ..||.||.++....
T Consensus 293 ~~~~~C~IC~~~~~~~-v~lpCgH~~fC~~C~~~~------~~CP~CR~~i~~~~ 340 (345)
T 3t6p_A 293 QEERTCKVCMDKEVSV-VFIPCGHLVVCQECAPSL------RKCPICRGIIKGTV 340 (345)
T ss_dssp HTTCBCTTTSSSBCCE-EEETTCCEEECTTTGGGC------SBCTTTCCBCCEEE
T ss_pred cCCCCCCccCCcCCce-EEcCCCChhHhHHHHhcC------CcCCCCCCCccCeE
Confidence 4578999999999999 78999999 999999765 47999999987644
No 67
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=98.53 E-value=1.2e-08 Score=75.76 Aligned_cols=48 Identities=19% Similarity=0.337 Sum_probs=0.9
Q ss_pred CcccccccCCCCCCC-----------------CeecCCCCcccHHHHHHHHhcCCCCCCCCCCcccc
Q 027227 162 DVTTCPICQASPTTP-----------------FLALPCQHRYCYYCLRTRCAASPSFRCSRCNEPVI 211 (226)
Q Consensus 162 ~~~~C~iC~~~~~~p-----------------~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 211 (226)
++..|+||++.+..+ .+..+|+|.|+..||..|+.. ...||+||+++.
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~--~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT--RQVCPLDNREWE 111 (117)
T ss_dssp CC-----------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHc--CCcCCCCCCeee
Confidence 346899999888763 122589999999999999976 468999999865
No 68
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.49 E-value=2.9e-07 Score=63.59 Aligned_cols=52 Identities=27% Similarity=0.571 Sum_probs=42.6
Q ss_pred CCcCcccccccCCCC--CCCCeecCCC-----CcccHHHHHHHHhcCCCCCCCCCCcccc
Q 027227 159 SEEDVTTCPICQASP--TTPFLALPCQ-----HRYCYYCLRTRCAASPSFRCSRCNEPVI 211 (226)
Q Consensus 159 ~~~~~~~C~iC~~~~--~~p~~~~~Cg-----H~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 211 (226)
...++..|.||++.+ .++ ..++|+ |.|...||..|+.......||+|+..+.
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~-l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~ 69 (80)
T 2d8s_A 11 TPSSQDICRICHCEGDDESP-LITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFI 69 (80)
T ss_dssp CCTTSCCCSSSCCCCCSSSC-EECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCC
T ss_pred CCCCCCCCeEcCccccCCCe-eEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeee
Confidence 345667899999765 467 578996 9999999999998755568999999886
No 69
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.22 E-value=3.8e-06 Score=57.00 Aligned_cols=51 Identities=22% Similarity=0.421 Sum_probs=41.2
Q ss_pred cCcccccccCCCCCCCCeecCCCCcccHHHHHHHHhcCCCCCCCCCCcccc
Q 027227 161 EDVTTCPICQASPTTPFLALPCQHRYCYYCLRTRCAASPSFRCSRCNEPVI 211 (226)
Q Consensus 161 ~~~~~C~iC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 211 (226)
+....|.||.+.+..-.....|+|.|-..||..|++......||.|+.+..
T Consensus 13 ~~i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~ 63 (74)
T 2ct0_A 13 DAVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 63 (74)
T ss_dssp SSSCBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCC
T ss_pred CCCCcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCC
Confidence 456789999998875433457999999999999998654578999998766
No 70
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=97.68 E-value=3e-05 Score=50.32 Aligned_cols=50 Identities=26% Similarity=0.373 Sum_probs=40.2
Q ss_pred cCcccccccCCCCCCCCeecCCC--C---cccHHHHHHHHhcCCCCCCCCCCcccc
Q 027227 161 EDVTTCPICQASPTTPFLALPCQ--H---RYCYYCLRTRCAASPSFRCSRCNEPVI 211 (226)
Q Consensus 161 ~~~~~C~iC~~~~~~p~~~~~Cg--H---~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 211 (226)
++...|.||++...++ ...||. + .|-..|+..|+..+++..||+|+.++.
T Consensus 4 ~~~~~CrIC~~~~~~~-l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 4 EDVPVCWICNEELGNE-RFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp CSCCEETTTTEECSCC-CCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCEeEEeecCCCCc-eecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 4567899999877777 467865 3 789999999998655679999998875
No 71
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=97.37 E-value=5.6e-05 Score=65.37 Aligned_cols=52 Identities=19% Similarity=0.366 Sum_probs=38.9
Q ss_pred CcCcccccccCCCCCC----CC---eecCCCCcccHHHHHHHHhcCC---------CCCCCCCCcccc
Q 027227 160 EEDVTTCPICQASPTT----PF---LALPCQHRYCYYCLRTRCAASP---------SFRCSRCNEPVI 211 (226)
Q Consensus 160 ~~~~~~C~iC~~~~~~----p~---~~~~CgH~fC~~Ci~~~~~~~~---------~~~CP~Cr~~~~ 211 (226)
.+....|+||.+.... |- ....|||.|...|+.+|+.... ...||.|++++.
T Consensus 305 ee~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs 372 (381)
T 3k1l_B 305 DNEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS 372 (381)
T ss_dssp CCSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred ccCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence 3467789999976654 31 1247999999999999997521 146999999886
No 72
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=97.05 E-value=0.00067 Score=56.05 Aligned_cols=49 Identities=22% Similarity=0.421 Sum_probs=40.2
Q ss_pred cccccccCCCCCCCCeecCCCCcccHHHHHHHHhcCCCCCCCCCCcccc
Q 027227 163 VTTCPICQASPTTPFLALPCQHRYCYYCLRTRCAASPSFRCSRCNEPVI 211 (226)
Q Consensus 163 ~~~C~iC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 211 (226)
-..|.+|.+....-.....|+|.|...|+..|++......||.|+.+..
T Consensus 180 i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~ 228 (238)
T 3nw0_A 180 VKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 228 (238)
T ss_dssp CCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCC
T ss_pred CCcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCC
Confidence 5689999998876534455999999999999997655679999998765
No 73
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=95.74 E-value=0.0051 Score=43.44 Aligned_cols=33 Identities=21% Similarity=0.714 Sum_probs=26.7
Q ss_pred CcccccccCCC-CCCCCee--cCCCCcccHHHHHHHH
Q 027227 162 DVTTCPICQAS-PTTPFLA--LPCQHRYCYYCLRTRC 195 (226)
Q Consensus 162 ~~~~C~iC~~~-~~~p~~~--~~CgH~fC~~Ci~~~~ 195 (226)
++..|++|.+. ...| +. +.|+|.||..|+....
T Consensus 2 ee~~C~~C~~~~~~~a-v~~C~~C~~~~C~~Cl~~~h 37 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDA-VKTCVTCEVSYCDECLKATH 37 (101)
T ss_dssp CCCBCTTCCSSSCCBC-CEEETTTTEEECHHHHHHHS
T ss_pred CCCCCcCCCCCCCCCc-eEECCcCChHHhHHHCHHHh
Confidence 35789999975 5666 55 8999999999999733
No 74
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=93.64 E-value=0.12 Score=34.96 Aligned_cols=37 Identities=24% Similarity=0.687 Sum_probs=29.3
Q ss_pred CcCcccccccCCCCCCCCeecCC----CCcccHHHHHHHHhc
Q 027227 160 EEDVTTCPICQASPTTPFLALPC----QHRYCYYCLRTRCAA 197 (226)
Q Consensus 160 ~~~~~~C~iC~~~~~~p~~~~~C----gH~fC~~Ci~~~~~~ 197 (226)
....+.|.+|.+.+.+.+ -..| +|.||..|-...++.
T Consensus 12 ~~a~l~CtlC~erLEdtH-FVQCPsv~~HkFCFpCsr~sIk~ 52 (93)
T 2cs3_A 12 NSGPLCCTICHERLEDTH-FVQCPSVPSHKFCFPCSRESIKA 52 (93)
T ss_dssp SCCSCCCSSSCSCCSSTT-SEECSSCSSCEECHHHHHHHHHH
T ss_pred CCCeeEeecchhhhccCc-eeeCCCccCCeeeccccHHHHHh
Confidence 345689999999998875 3345 699999999988874
No 75
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=93.62 E-value=0.059 Score=46.98 Aligned_cols=51 Identities=20% Similarity=0.482 Sum_probs=40.2
Q ss_pred cCcccccccCCCCCCCCeecCCCCcccHHH--HHHHHhcCCCCCCCCCCcccc
Q 027227 161 EDVTTCPICQASPTTPFLALPCQHRYCYYC--LRTRCAASPSFRCSRCNEPVI 211 (226)
Q Consensus 161 ~~~~~C~iC~~~~~~p~~~~~CgH~fC~~C--i~~~~~~~~~~~CP~Cr~~~~ 211 (226)
.-.+.||+-...+..|.....|.|.-|++- +.......+.+.||+|.+.+.
T Consensus 247 ~vSL~CPlS~~ri~~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~ 299 (371)
T 3i2d_A 247 IMSLQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIA 299 (371)
T ss_dssp EEESBCTTTSSBCSSEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCC
T ss_pred EEeecCCCccccccccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccC
Confidence 456999999999999987899999977665 333333457899999998775
No 76
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=93.49 E-value=0.082 Score=36.86 Aligned_cols=56 Identities=21% Similarity=0.345 Sum_probs=41.9
Q ss_pred CCcCcccccccCCCCCCCCeecCCCCcccHHHHHHHHhcCCCCCCCCCCccccccccccc
Q 027227 159 SEEDVTTCPICQASPTTPFLALPCQHRYCYYCLRTRCAASPSFRCSRCNEPVIAMQRHGV 218 (226)
Q Consensus 159 ~~~~~~~C~iC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~ 218 (226)
+......|..|....+.- +....|-.|..|+...+.. +..||+|+.++..--++.+
T Consensus 24 s~~G~~nCKsCWf~~k~L--V~C~dHYLCl~CLtlmL~~--SdrCpIC~~pLPtkl~~~~ 79 (99)
T 2ko5_A 24 THLGPQFCKSCWFENKGL--VECNNHYLCLNCLTLLLSV--SNRCPICKMPLPTKLRPSA 79 (99)
T ss_dssp CCSCCCCCCSSCSCCSSE--EECSSCEEEHHHHHHTCSS--SSEETTTTEECCCCSCTTT
T ss_pred cccCcccChhhccccCCe--eeecchhhHHHHHHHHHhh--ccCCcccCCcCCcceecCc
Confidence 345668899999877753 4466688999999888764 5589999999976444444
No 77
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=93.23 E-value=0.074 Score=46.22 Aligned_cols=52 Identities=21% Similarity=0.484 Sum_probs=40.3
Q ss_pred CcCcccccccCCCCCCCCeecCCCCcccHHHH--HHHHhcCCCCCCCCCCcccc
Q 027227 160 EEDVTTCPICQASPTTPFLALPCQHRYCYYCL--RTRCAASPSFRCSRCNEPVI 211 (226)
Q Consensus 160 ~~~~~~C~iC~~~~~~p~~~~~CgH~fC~~Ci--~~~~~~~~~~~CP~Cr~~~~ 211 (226)
..-.+.||+-...+..|.....|.|.-|.+-. .......+.+.||+|++.+.
T Consensus 212 ~~vSL~CPlS~~ri~~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~ 265 (360)
T 4fo9_A 212 LRVSLMCPLGKMRLTIPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAA 265 (360)
T ss_dssp EEEESBCTTTCSBCSSEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCC
T ss_pred eEEeeeCCCccceeccCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccC
Confidence 34578999999999999877999999666543 33333456899999998875
No 78
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=89.54 E-value=0.35 Score=47.10 Aligned_cols=50 Identities=12% Similarity=0.062 Sum_probs=43.7
Q ss_pred CcCcccccccCCCCCCCCeecCCC-CcccHHHHHHHHhcCCCCCCCCCCccccc
Q 027227 160 EEDVTTCPICQASPTTPFLALPCQ-HRYCYYCLRTRCAASPSFRCSRCNEPVIA 212 (226)
Q Consensus 160 ~~~~~~C~iC~~~~~~p~~~~~Cg-H~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 212 (226)
..++..|||-.+.+.+| ++++.| ++|=..+|..|+.. ...||..|.++..
T Consensus 888 iP~~F~cPIs~~lM~DP-VilpsG~~TydR~~I~~wl~~--~~tdP~Tr~~L~~ 938 (968)
T 3m62_A 888 VPDEFLDPLMYTIMKDP-VILPASKMNIDRSTIKAHLLS--DSTDPFNRMPLKL 938 (968)
T ss_dssp SCGGGBCTTTCSBCSSE-EECTTTCCEEEHHHHHHHHTT--CCBCTTTCCBCCG
T ss_pred CcHHhCCcchhhHHhCC-eEcCCCCEEECHHHHHHHHhc--CCCCCCCCCCCCc
Confidence 35689999999999999 889998 58999999999976 4589999998864
No 79
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=88.99 E-value=0.66 Score=31.94 Aligned_cols=50 Identities=20% Similarity=0.432 Sum_probs=36.1
Q ss_pred CcccccccCCCCC-----CCCe-ecCCCCcccHHHHHHHHhcCCCCCCCCCCccccc
Q 027227 162 DVTTCPICQASPT-----TPFL-ALPCQHRYCYYCLRTRCAASPSFRCSRCNEPVIA 212 (226)
Q Consensus 162 ~~~~C~iC~~~~~-----~p~~-~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 212 (226)
..-.|.||.+..- ++++ ...|+.-.|..|..--.+ +.+..||.|+.+...
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErk-eG~q~CpqCktrYkr 70 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERR-EGTQNCPQCKTRYKR 70 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHH-TSCSSCTTTCCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHh-ccCccccccCCcccc
Confidence 4468999987532 2322 357898999999865444 467899999988863
No 80
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=86.79 E-value=0.34 Score=37.84 Aligned_cols=49 Identities=16% Similarity=0.377 Sum_probs=33.7
Q ss_pred CcccccccCCCCCCCCeecCCCCcccHHHHHHHHhc--CCCCCCCCCCcccc
Q 027227 162 DVTTCPICQASPTTPFLALPCQHRYCYYCLRTRCAA--SPSFRCSRCNEPVI 211 (226)
Q Consensus 162 ~~~~C~iC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~--~~~~~CP~Cr~~~~ 211 (226)
++..|.+|.+.-..- ....|...|...|+...+.. .+.+.||.|+..-.
T Consensus 3 ~~~~C~~C~~~g~ll-~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~~ 53 (184)
T 3o36_A 3 NEDWCAVCQNGGELL-CCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLSK 53 (184)
T ss_dssp SCSSCTTTCCCSSCE-ECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSSS
T ss_pred CCCccccCCCCCeee-ecCCCCcccCccccCCCCCCCCCCCEECccccCccc
Confidence 456799998654332 44668888889997655443 24689999987554
No 81
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=82.64 E-value=1.3 Score=28.60 Aligned_cols=48 Identities=15% Similarity=0.447 Sum_probs=34.2
Q ss_pred cCcccccccCCCCCCCCeecCCCCcccHHHHHHHHhcC--CCCCCCCCCcc
Q 027227 161 EDVTTCPICQASPTTPFLALPCQHRYCYYCLRTRCAAS--PSFRCSRCNEP 209 (226)
Q Consensus 161 ~~~~~C~iC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~--~~~~CP~Cr~~ 209 (226)
.....|.+|.+.-..- .-..|...|..+|+...+... +.+.||.|...
T Consensus 10 ~~~~~C~vC~~~~~ll-~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~ 59 (66)
T 2lri_C 10 APGARCGVCGDGTDVL-RCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGD 59 (66)
T ss_dssp CTTCCCTTTSCCTTCE-ECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTC
T ss_pred CCCCCcCCCCCCCeEE-ECCCCCCceecccCCCccCcCCCCCEECccccCC
Confidence 4456799998653322 446788899999997666542 46899999654
No 82
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=82.03 E-value=1.5 Score=32.87 Aligned_cols=47 Identities=15% Similarity=0.414 Sum_probs=34.3
Q ss_pred cCcccccccCCCCCCCCeecCCCCcccHHHHHHHHh---------cCCCCCCCCCCc
Q 027227 161 EDVTTCPICQASPTTPFLALPCQHRYCYYCLRTRCA---------ASPSFRCSRCNE 208 (226)
Q Consensus 161 ~~~~~C~iC~~~~~~p~~~~~CgH~fC~~Ci~~~~~---------~~~~~~CP~Cr~ 208 (226)
..+..|.+|.+--.-- ....|-..||..|+...+. ..+.+.||.|..
T Consensus 61 g~~d~C~vC~~GG~Ll-cCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 61 GMDEQCRWCAEGGNLI-CCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp SCBCSCSSSCCCSSEE-ECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCCCeecccCCCCcEE-eCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 3467899998754432 3467888999999986542 346899999974
No 83
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=79.74 E-value=1.6 Score=27.65 Aligned_cols=41 Identities=22% Similarity=0.544 Sum_probs=28.7
Q ss_pred ccccccCCCCCCC--CeecCCCCcccHHHHHHHHhcCCCCCCCCC
Q 027227 164 TTCPICQASPTTP--FLALPCQHRYCYYCLRTRCAASPSFRCSRC 206 (226)
Q Consensus 164 ~~C~iC~~~~~~p--~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~C 206 (226)
..|-.|+..+.+. |....|++.||.+|=. .+. +.-..||-|
T Consensus 16 ~~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~-fiH-e~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQHVYVCAVCQNVFCVDCDV-FVH-DSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSEEECCTTTTCCBCHHHHH-TTT-TTSCSSSTT
T ss_pred CcccccCcccCCCccEECCccCcCcccchhH-HHH-hhccCCcCC
Confidence 4599998877543 3467899999999943 222 235679988
No 84
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=77.57 E-value=2.2 Score=31.49 Aligned_cols=47 Identities=15% Similarity=0.405 Sum_probs=33.4
Q ss_pred cCcccccccCCCCCCCCeecCCCCcccHHHHHHHH--------h-cCCCCCCCCCCc
Q 027227 161 EDVTTCPICQASPTTPFLALPCQHRYCYYCLRTRC--------A-ASPSFRCSRCNE 208 (226)
Q Consensus 161 ~~~~~C~iC~~~~~~p~~~~~CgH~fC~~Ci~~~~--------~-~~~~~~CP~Cr~ 208 (226)
..+..|.+|.+--.-. -...|-..||..|+...+ . ..+.+.|+.|..
T Consensus 55 g~~~~C~vC~dGG~Ll-cCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~ 110 (129)
T 3ql9_A 55 GMDEQCRWCAEGGNLI-CCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHP 110 (129)
T ss_dssp SCBSSCTTTCCCSEEE-ECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCC
T ss_pred CCCCcCeecCCCCeeE-ecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCC
Confidence 3456799998754433 346788999999998642 1 346799999964
No 85
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=77.14 E-value=1.4 Score=30.14 Aligned_cols=34 Identities=21% Similarity=0.404 Sum_probs=25.1
Q ss_pred CcCcccccccCCCCCC---CCeecCCCCcccHHHHHH
Q 027227 160 EEDVTTCPICQASPTT---PFLALPCQHRYCYYCLRT 193 (226)
Q Consensus 160 ~~~~~~C~iC~~~~~~---p~~~~~CgH~fC~~Ci~~ 193 (226)
..+...|.+|...+.. -+....||.+||..|...
T Consensus 6 ~~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 42 (88)
T 1wfk_A 6 SGMESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSF 42 (88)
T ss_dssp CCCCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCE
T ss_pred CCcCCCCcCcCCcccCccccccCCCCCCEEChhHcCC
Confidence 4556789999986652 234578999999999754
No 86
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=73.78 E-value=0.54 Score=29.92 Aligned_cols=33 Identities=21% Similarity=0.716 Sum_probs=20.1
Q ss_pred ccccccCCCCCC-----CCeecC--CCCcccHHHHHHHHh
Q 027227 164 TTCPICQASPTT-----PFLALP--CQHRYCYYCLRTRCA 196 (226)
Q Consensus 164 ~~C~iC~~~~~~-----p~~~~~--CgH~fC~~Ci~~~~~ 196 (226)
..||-|...+.. -++... |++.|||.|...|..
T Consensus 7 k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~ 46 (60)
T 1wd2_A 7 KECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEP 46 (60)
T ss_dssp CCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGG
T ss_pred eECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCccc
Confidence 468888765542 211222 788888888766543
No 87
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=72.08 E-value=0.43 Score=40.64 Aligned_cols=56 Identities=21% Similarity=0.445 Sum_probs=39.1
Q ss_pred cCcccccccCCCCCCCCeec----CCC--CcccHHHHHHHHhcCCCCCCCCCCccccccccccccC
Q 027227 161 EDVTTCPICQASPTTPFLAL----PCQ--HRYCYYCLRTRCAASPSFRCSRCNEPVIAMQRHGVIN 220 (226)
Q Consensus 161 ~~~~~C~iC~~~~~~p~~~~----~Cg--H~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~ 220 (226)
.....||+|...+... +.. .=| +.+|..|-..|--. ...||.|+.. ..+.-+.+.+
T Consensus 180 ~~~~~CPvCGs~P~~s-~l~~~g~~~G~R~l~Cs~C~t~W~~~--R~~C~~Cg~~-~~l~y~~~e~ 241 (309)
T 2fiy_A 180 ESRTLCPACGSPPMAG-MIRQGGKETGLRYLSCSLCACEWHYV--RIKCSHCEES-KHLAYLSLEH 241 (309)
T ss_dssp TTCSSCTTTCCCEEEE-EEEC----CCEEEEEETTTCCEEECC--TTSCSSSCCC-SCCEEECCCC
T ss_pred ccCCCCCCCCCcCcee-EEeecCCCCCcEEEEeCCCCCEEeec--CcCCcCCCCC-CCeeEEEecC
Confidence 5578999999987765 332 234 57899998877643 5689999987 4465555543
No 88
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=72.01 E-value=1.8 Score=31.70 Aligned_cols=31 Identities=19% Similarity=0.488 Sum_probs=23.3
Q ss_pred cccccccCCCCC---CCCeecCCCCcccHHHHHH
Q 027227 163 VTTCPICQASPT---TPFLALPCQHRYCYYCLRT 193 (226)
Q Consensus 163 ~~~C~iC~~~~~---~p~~~~~CgH~fC~~Ci~~ 193 (226)
...|.+|...+. ..+....||++||..|...
T Consensus 69 ~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~ 102 (125)
T 1joc_A 69 VQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAK 102 (125)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCE
T ss_pred CCCCcCcCCccccccccccCCCCCeEEChHHhCC
Confidence 458999998664 3345678999999999643
No 89
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=70.36 E-value=1.5 Score=27.72 Aligned_cols=49 Identities=20% Similarity=0.539 Sum_probs=32.4
Q ss_pred cCcccccccCCCCCCCCeecCCCCcccHHHHHHHHhc--CCCCCCCCCCccc
Q 027227 161 EDVTTCPICQASPTTPFLALPCQHRYCYYCLRTRCAA--SPSFRCSRCNEPV 210 (226)
Q Consensus 161 ~~~~~C~iC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~--~~~~~CP~Cr~~~ 210 (226)
..+..|.+|.+.-..- ....|...|...|+..-+.+ .+.+.||.|....
T Consensus 7 ~~~~~C~vC~~~g~ll-~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 57 (61)
T 1mm2_A 7 HHMEFCRVCKDGGELL-CCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPA 57 (61)
T ss_dssp SSCSSCTTTCCCSSCB-CCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTC
T ss_pred CCCCcCCCCCCCCCEE-EcCCCCHHHcccccCCCcCcCCCCccCChhhcCch
Confidence 4567899998643222 34567778888888754433 2468899997543
No 90
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=70.35 E-value=22 Score=24.08 Aligned_cols=55 Identities=18% Similarity=0.446 Sum_probs=35.8
Q ss_pred CCcCcccccccCCC---CCCCCeecCCCCcccHHHHHHHH------------hc--CCCCCCCCCCcccccccc
Q 027227 159 SEEDVTTCPICQAS---PTTPFLALPCQHRYCYYCLRTRC------------AA--SPSFRCSRCNEPVIAMQR 215 (226)
Q Consensus 159 ~~~~~~~C~iC~~~---~~~p~~~~~CgH~fC~~Ci~~~~------------~~--~~~~~CP~Cr~~~~~~~~ 215 (226)
....+..|.||... ...| ...|+-+|--.|+.+.- .. ...+.||.|..-..-++.
T Consensus 11 ~~~~D~~C~VC~~~t~~~l~p--CRvC~RvfH~~CL~r~gy~~~~~a~e~~l~A~T~~GWSC~~CenL~lLLtE 82 (89)
T 1wil_A 11 PVVNDEMCDVCEVWTAESLFP--CRVCTRVFHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHYCDNINLLLTE 82 (89)
T ss_dssp CCCCSCCCTTTCCCCSSCCSS--CSSSSSCCCHHHHHHHTSCCCCCCCSCSCCCSSSSSCCCTTTCCCCSSSCC
T ss_pred CCCCCcccCccccccccceec--cccccccccHhhcccccccccHHHHHHHHccCCCCCccccccchhhhhcch
Confidence 34567899999843 2344 35689999999998851 11 136889999544333333
No 91
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=68.08 E-value=1.4 Score=30.14 Aligned_cols=53 Identities=15% Similarity=0.353 Sum_probs=33.9
Q ss_pred CCCcCcccccccCCCC---CCCC-eecCCCCcccHHHHHHHHhcCCCCCCCCCCccc
Q 027227 158 SSEEDVTTCPICQASP---TTPF-LALPCQHRYCYYCLRTRCAASPSFRCSRCNEPV 210 (226)
Q Consensus 158 ~~~~~~~~C~iC~~~~---~~p~-~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~ 210 (226)
...+++..|.+|.+.- .+.. ....|.-.|-..|+.......+.+.||.|....
T Consensus 20 ~~~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~ 76 (88)
T 2l43_A 20 SLIDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSR 76 (88)
T ss_dssp CCCCCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHT
T ss_pred CcCCCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCcc
Confidence 3446778999998653 1111 224577778888886543334578899996543
No 92
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=67.65 E-value=2.8 Score=27.46 Aligned_cols=29 Identities=17% Similarity=0.396 Sum_probs=22.2
Q ss_pred ccccccCCCCC---CCCeecCCCCcccHHHHH
Q 027227 164 TTCPICQASPT---TPFLALPCQHRYCYYCLR 192 (226)
Q Consensus 164 ~~C~iC~~~~~---~p~~~~~CgH~fC~~Ci~ 192 (226)
..|.+|...+. ..+....||.+||..|..
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~ 43 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVFCQEHSS 43 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGGGSC
T ss_pred CcccCCCCccCCccccccCCCCCEEEcccccC
Confidence 58999998665 233457899999999964
No 93
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=67.25 E-value=2.2 Score=31.07 Aligned_cols=43 Identities=21% Similarity=0.468 Sum_probs=26.5
Q ss_pred CcccccccCCCCCCC---CeecCCCCcccHHHHHHHHhcCCCCCCCCC
Q 027227 162 DVTTCPICQASPTTP---FLALPCQHRYCYYCLRTRCAASPSFRCSRC 206 (226)
Q Consensus 162 ~~~~C~iC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~C 206 (226)
+...|..|...+... +....||.+||..|...... ....|-.|
T Consensus 18 ~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~--~vRVC~~C 63 (120)
T 1y02_A 18 LEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGN--GPRLCLLC 63 (120)
T ss_dssp --CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC------CCEEHHH
T ss_pred ccCcccCcCCccccccccccCCCCCCeeCHHHhCCCCC--CceECHHH
Confidence 346899999876532 35678999999999654332 13445555
No 94
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=67.19 E-value=2.9 Score=28.16 Aligned_cols=32 Identities=25% Similarity=0.411 Sum_probs=24.1
Q ss_pred CcccccccCCCCC---CCCeecCCCCcccHHHHHH
Q 027227 162 DVTTCPICQASPT---TPFLALPCQHRYCYYCLRT 193 (226)
Q Consensus 162 ~~~~C~iC~~~~~---~p~~~~~CgH~fC~~Ci~~ 193 (226)
+...|.+|...+. .-+....||.+||..|...
T Consensus 20 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 54 (84)
T 1z2q_A 20 DAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRH 54 (84)
T ss_dssp TCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCC
T ss_pred CCCCCcCcCCccccchhcccccCCCcEEChHHhCC
Confidence 4568999998664 3345578999999999754
No 95
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=67.14 E-value=3.2 Score=26.21 Aligned_cols=47 Identities=21% Similarity=0.584 Sum_probs=32.3
Q ss_pred cCcccccccCCCCCCCCeecCCCCcccHHHHHHHHhc--CCCCCCCCCCc
Q 027227 161 EDVTTCPICQASPTTPFLALPCQHRYCYYCLRTRCAA--SPSFRCSRCNE 208 (226)
Q Consensus 161 ~~~~~C~iC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~--~~~~~CP~Cr~ 208 (226)
..+..|.+|.+.-..- ....|...|...|+...+.+ ++.+.||.|..
T Consensus 9 ~~~~~C~vC~~~g~ll-~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 9 DHQDYCEVCQQGGEII-LCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp CCCSSCTTTSCCSSEE-ECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred CCCCCCccCCCCCcEE-ECCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence 4567899998743221 33567788999999865432 35789999965
No 96
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=65.90 E-value=3 Score=28.00 Aligned_cols=32 Identities=22% Similarity=0.585 Sum_probs=23.8
Q ss_pred CcccccccCCCCC---CCCeecCCCCcccHHHHHH
Q 027227 162 DVTTCPICQASPT---TPFLALPCQHRYCYYCLRT 193 (226)
Q Consensus 162 ~~~~C~iC~~~~~---~p~~~~~CgH~fC~~Ci~~ 193 (226)
+...|.+|...+. .-+....||.+||..|...
T Consensus 18 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 52 (82)
T 2yw8_A 18 EATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSN 52 (82)
T ss_dssp CCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCE
T ss_pred cCCcccCcCCcccCccccccCCCCCCEEChHHhCC
Confidence 3457999998665 2334578999999999754
No 97
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=65.83 E-value=3.1 Score=28.46 Aligned_cols=33 Identities=21% Similarity=0.523 Sum_probs=24.5
Q ss_pred CcccccccCCCCC---CCCeecCCCCcccHHHHHHH
Q 027227 162 DVTTCPICQASPT---TPFLALPCQHRYCYYCLRTR 194 (226)
Q Consensus 162 ~~~~C~iC~~~~~---~p~~~~~CgH~fC~~Ci~~~ 194 (226)
+...|.+|...+. .-+....||++||..|....
T Consensus 19 ~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~ 54 (90)
T 3t7l_A 19 EAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRK 54 (90)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred cCCcCcCCCCcccchhhCccccCCCCEECCcccCCe
Confidence 4567999987654 33456789999999997543
No 98
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=65.72 E-value=0.4 Score=33.54 Aligned_cols=45 Identities=22% Similarity=0.473 Sum_probs=30.3
Q ss_pred cccccccCCCCCCCCeecCCCCcccHHHHHHHHhcCCCCCCCCCCcccccccc
Q 027227 163 VTTCPICQASPTTPFLALPCQHRYCYYCLRTRCAASPSFRCSRCNEPVIAMQR 215 (226)
Q Consensus 163 ~~~C~iC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~ 215 (226)
+..||.|...+.- .=++.+|..|-..... ...||.|++++..++-
T Consensus 32 ~~~CP~Cq~eL~~-----~g~~~hC~~C~~~f~~---~a~CPdC~q~LevLkA 76 (101)
T 2jne_A 32 ELHCPQCQHVLDQ-----DNGHARCRSCGEFIEM---KALCPDCHQPLQVLKA 76 (101)
T ss_dssp CCBCSSSCSBEEE-----ETTEEEETTTCCEEEE---EEECTTTCSBCEEEEE
T ss_pred cccCccCCCccee-----cCCEEECccccchhhc---cccCcchhhHHHHHHH
Confidence 3899999976541 1245558888654433 3479999999876553
No 99
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=65.00 E-value=1.6 Score=34.59 Aligned_cols=49 Identities=16% Similarity=0.371 Sum_probs=33.2
Q ss_pred cCcccccccCCCCCCCCeecCCCCcccHHHHHHHHhc--CCCCCCCCCCccc
Q 027227 161 EDVTTCPICQASPTTPFLALPCQHRYCYYCLRTRCAA--SPSFRCSRCNEPV 210 (226)
Q Consensus 161 ~~~~~C~iC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~--~~~~~CP~Cr~~~ 210 (226)
..+..|.+|.+.-..- ....|...|...|+...+.. .+.+.||.|...-
T Consensus 5 ~~~~~C~~C~~~g~ll-~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 5 PNEDWCAVCQNGGDLL-CCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG 55 (207)
T ss_dssp SSCSSBTTTCCCEEEE-ECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCCCCCCCCCCceE-EcCCCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence 3456799998653322 34568888999998654432 2468999998654
No 100
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=65.00 E-value=2.9 Score=26.44 Aligned_cols=40 Identities=38% Similarity=0.813 Sum_probs=27.0
Q ss_pred CCcCcccccccCCCCCCCCeecCCCCcccHHHHHHHHhcCCCCCCCCCCcccc
Q 027227 159 SEEDVTTCPICQASPTTPFLALPCQHRYCYYCLRTRCAASPSFRCSRCNEPVI 211 (226)
Q Consensus 159 ~~~~~~~C~iC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 211 (226)
...+...|.||...-- +..||| -|.+| ....|..|+-.+.
T Consensus 5 ~~~d~~~C~iC~KTKF----ADG~Gh-~C~yC--------k~r~CaRCGg~v~ 44 (62)
T 2a20_A 5 QKGDAPTCGICHKTKF----ADGCGH-NCSYC--------QTKFCARCGGRVS 44 (62)
T ss_dssp CSSCCCCCSSSSCSCC----CSSCCE-EBTTT--------CCEECTTSEEEEE
T ss_pred ccCCcchhhhhcccee----ccCCCc-ccccc--------CCeeecccCCEee
Confidence 3456789999997322 457888 56666 2456888876554
No 101
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=64.69 E-value=3.4 Score=29.29 Aligned_cols=37 Identities=19% Similarity=0.338 Sum_probs=22.7
Q ss_pred CCCCCeecCCCCcccHHHHHHHHhcCCCCCCCCCCccccccccc
Q 027227 173 PTTPFLALPCQHRYCYYCLRTRCAASPSFRCSRCNEPVIAMQRH 216 (226)
Q Consensus 173 ~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~ 216 (226)
...|+....||+.|+. .+ +....||.|+..-....++
T Consensus 64 ~v~p~~C~~CG~~F~~-----~~--~kPsrCP~CkSe~Ie~P~F 100 (105)
T 2gmg_A 64 LIKPAQCRKCGFVFKA-----EI--NIPSRCPKCKSEWIEEPRF 100 (105)
T ss_dssp EECCCBBTTTCCBCCC-----CS--SCCSSCSSSCCCCBCCCCE
T ss_pred EEECcChhhCcCeecc-----cC--CCCCCCcCCCCCccCCcce
Confidence 3445577889999821 11 2356899998765544333
No 102
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=64.50 E-value=3.2 Score=27.97 Aligned_cols=31 Identities=19% Similarity=0.514 Sum_probs=23.0
Q ss_pred CcccccccCCCCC---CCCeecCCCCcccHHHHH
Q 027227 162 DVTTCPICQASPT---TPFLALPCQHRYCYYCLR 192 (226)
Q Consensus 162 ~~~~C~iC~~~~~---~p~~~~~CgH~fC~~Ci~ 192 (226)
+...|.+|...+. .-+....||.+||..|..
T Consensus 13 ~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~ 46 (84)
T 1x4u_A 13 NFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCS 46 (84)
T ss_dssp CCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSC
T ss_pred CCCcCcCcCCccccchhhhhhcCCCcEEChhhcC
Confidence 3468999998664 233457899999999964
No 103
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=64.32 E-value=2.4 Score=33.90 Aligned_cols=31 Identities=23% Similarity=0.495 Sum_probs=23.6
Q ss_pred CcccccccCCCCC---CCCeecCCCCcccHHHHH
Q 027227 162 DVTTCPICQASPT---TPFLALPCQHRYCYYCLR 192 (226)
Q Consensus 162 ~~~~C~iC~~~~~---~p~~~~~CgH~fC~~Ci~ 192 (226)
+...|..|...+. ..+....||++||..|..
T Consensus 160 ~~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~ 193 (220)
T 1dvp_A 160 DGRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTA 193 (220)
T ss_dssp CCSBCTTTCCBCCSSSCCEECTTTCCEECSTTSC
T ss_pred CCCccCCCCCccCCcccccccCCcCCEEChHHhC
Confidence 4579999997664 334567899999999964
No 104
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=63.19 E-value=7.3 Score=34.02 Aligned_cols=48 Identities=23% Similarity=0.568 Sum_probs=33.6
Q ss_pred cCcccccccCCCCCCCCeec--CCCCcccHHHHHHHHh--------cCCCCCCCCCCcc
Q 027227 161 EDVTTCPICQASPTTPFLAL--PCQHRYCYYCLRTRCA--------ASPSFRCSRCNEP 209 (226)
Q Consensus 161 ~~~~~C~iC~~~~~~p~~~~--~CgH~fC~~Ci~~~~~--------~~~~~~CP~Cr~~ 209 (226)
..+..|.+|.+--.-= ... .|...||..||...+- +.+.+.|=.|...
T Consensus 91 G~~~yCr~C~~Gg~l~-~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p~ 148 (386)
T 2pv0_B 91 GYQSYCSICCSGETLL-ICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLPS 148 (386)
T ss_dssp SSBCSCTTTCCCSSCE-ECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSSC
T ss_pred CCcccceEcCCCCeEE-EeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCCc
Confidence 3467899998644321 233 7889999999988762 2357999999644
No 105
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=62.53 E-value=3.4 Score=26.72 Aligned_cols=35 Identities=26% Similarity=0.577 Sum_probs=26.9
Q ss_pred CcCcccccccCCCCCCCCeecCC-CCcccHHHHHHHHh
Q 027227 160 EEDVTTCPICQASPTTPFLALPC-QHRYCYYCLRTRCA 196 (226)
Q Consensus 160 ~~~~~~C~iC~~~~~~p~~~~~C-gH~fC~~Ci~~~~~ 196 (226)
.++..-|.||.+..+. ....| |-.||..|..+...
T Consensus 5 ~ee~pWC~ICneDAtl--rC~gCdgDLYC~rC~rE~H~ 40 (67)
T 2d8v_A 5 SSGLPWCCICNEDATL--RCAGCDGDLYCARCFREGHD 40 (67)
T ss_dssp CCCCSSCTTTCSCCCE--EETTTTSEEECSSHHHHHTT
T ss_pred CcCCCeeEEeCCCCeE--EecCCCCceehHHHHHHHcc
Confidence 3455679999998553 56889 78999999987653
No 106
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=62.36 E-value=2.9 Score=33.64 Aligned_cols=32 Identities=19% Similarity=0.479 Sum_probs=23.9
Q ss_pred CcccccccCCCCC---CCCeecCCCCcccHHHHHH
Q 027227 162 DVTTCPICQASPT---TPFLALPCQHRYCYYCLRT 193 (226)
Q Consensus 162 ~~~~C~iC~~~~~---~p~~~~~CgH~fC~~Ci~~ 193 (226)
+...|..|...+. .-+....||++||..|...
T Consensus 163 ~~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~ 197 (226)
T 3zyq_A 163 DAEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSK 197 (226)
T ss_dssp CCSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCE
T ss_pred cCCCCcCcCCCCCccccccccCCCcCEeChhhcCC
Confidence 4568999997654 2345678999999999643
No 107
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=61.75 E-value=4 Score=27.99 Aligned_cols=50 Identities=18% Similarity=0.464 Sum_probs=34.1
Q ss_pred CCcCcccccccCCCCCCCCeecCCCCcccHHHHHHHHhc--CCCCCCCCCCcc
Q 027227 159 SEEDVTTCPICQASPTTPFLALPCQHRYCYYCLRTRCAA--SPSFRCSRCNEP 209 (226)
Q Consensus 159 ~~~~~~~C~iC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~--~~~~~CP~Cr~~ 209 (226)
....+..|.+|.+.-..- ....|.-.|-..|+..-+.+ .+.+.||.|...
T Consensus 21 ~d~n~~~C~vC~~~g~LL-~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 21 LDDSATICRVCQKPGDLV-MCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp SSSSSSCCSSSCSSSCCE-ECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred cCCCCCcCcCcCCCCCEE-ECCCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 345667899999653222 34567778889998665543 247889999753
No 108
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=59.91 E-value=6.6 Score=27.98 Aligned_cols=47 Identities=13% Similarity=0.329 Sum_probs=34.1
Q ss_pred CcccccccCCCCCCCCeecCCCCcccHHHHHHHHhcCCCCCCCCCCccccc
Q 027227 162 DVTTCPICQASPTTPFLALPCQHRYCYYCLRTRCAASPSFRCSRCNEPVIA 212 (226)
Q Consensus 162 ~~~~C~iC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 212 (226)
+-..|..|...+....-...=|..||..|..... ...|..|++++..
T Consensus 29 ~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~----~~~C~~C~~~I~~ 75 (126)
T 2xqn_T 29 KHFCCFDCDSILAGEIYVMVNDKPVCKPCYVKNH----AVVCQGCHNAIDP 75 (126)
T ss_dssp GGSBCTTTCCBCTTSEEEEETTEEEEHHHHHHHS----CCBCTTTCSBCCT
T ss_pred CCCCcCCCCCCCCcCEEEeECCEEechHHhCcCc----CccCcccCCcCCc
Confidence 3478999988776521234668889999987654 3579999998874
No 109
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=59.39 E-value=0.96 Score=28.10 Aligned_cols=47 Identities=21% Similarity=0.525 Sum_probs=29.8
Q ss_pred CcCcccccccCCCCCCCCeecCCCCcccHHHHHHHHhc--CCCCCCCCCC
Q 027227 160 EEDVTTCPICQASPTTPFLALPCQHRYCYYCLRTRCAA--SPSFRCSRCN 207 (226)
Q Consensus 160 ~~~~~~C~iC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~--~~~~~CP~Cr 207 (226)
..++..|.+|.+.-..- ....|...|...|+..-+.. ++.+.||.|.
T Consensus 6 ~~~~~~C~vC~~~g~ll-~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~ 54 (56)
T 2yql_A 6 SGHEDFCSVCRKSGQLL-MCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQ 54 (56)
T ss_dssp CSSCCSCSSSCCSSCCE-ECSSSSCEECSSSSSSCCCSCCCSSCCCHHHH
T ss_pred CCCCCCCccCCCCCeEE-EcCCCCcceECccCCCCcCCCCCCceEChhhh
Confidence 45567899998753222 33567777888888654432 2356788774
No 110
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=58.32 E-value=2.1 Score=37.52 Aligned_cols=46 Identities=20% Similarity=0.415 Sum_probs=0.0
Q ss_pred cccccccCCCCC---CCCeecCCCCcccHHHHHHHHhc-----CCCCCCCCCCc
Q 027227 163 VTTCPICQASPT---TPFLALPCQHRYCYYCLRTRCAA-----SPSFRCSRCNE 208 (226)
Q Consensus 163 ~~~C~iC~~~~~---~p~~~~~CgH~fC~~Ci~~~~~~-----~~~~~CP~Cr~ 208 (226)
...|..|...+. ..+....||++||..|......- ++...|-.|-.
T Consensus 375 ~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~ 428 (434)
T 3mpx_A 375 VMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFG 428 (434)
T ss_dssp ------------------------------------------------------
T ss_pred CCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHH
Confidence 568999987654 22356789999999998654321 12345666643
No 111
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=58.07 E-value=3.5 Score=32.25 Aligned_cols=47 Identities=19% Similarity=0.453 Sum_probs=32.1
Q ss_pred cccccccCCCCCCCCeecCCCCcccHHHHHHHHhc--CCCCCCCCCCccc
Q 027227 163 VTTCPICQASPTTPFLALPCQHRYCYYCLRTRCAA--SPSFRCSRCNEPV 210 (226)
Q Consensus 163 ~~~C~iC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~--~~~~~CP~Cr~~~ 210 (226)
+..|.+|.+.-..- ....|...|...|+..-+.. .+.+.||.|...-
T Consensus 2 ~~~C~~C~~~g~ll-~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~~ 50 (189)
T 2ro1_A 2 ATICRVCQKPGDLV-MCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLP 50 (189)
T ss_dssp CCCBTTTCCCSSCC-CCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCSC
T ss_pred CCcCccCCCCCcee-ECCCCCchhccccCCCCcccCCCCCCCCcCccCCC
Confidence 35799998654333 34667788889998654433 3578899997653
No 112
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=56.45 E-value=1.9 Score=24.11 Aligned_cols=14 Identities=29% Similarity=0.520 Sum_probs=8.6
Q ss_pred cccccccCCCCCCC
Q 027227 163 VTTCPICQASPTTP 176 (226)
Q Consensus 163 ~~~C~iC~~~~~~p 176 (226)
...||+|+..+.++
T Consensus 5 GFiCP~C~~~l~s~ 18 (34)
T 3mjh_B 5 GFICPQCMKSLGSA 18 (34)
T ss_dssp EEECTTTCCEESSH
T ss_pred ccCCcHHHHHcCCH
Confidence 36677776665554
No 113
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1
Probab=56.20 E-value=36 Score=22.48 Aligned_cols=53 Identities=19% Similarity=0.437 Sum_probs=32.0
Q ss_pred CcCcccccccCCCCC---------------CCCeecCCCCcccHH-HHHHHHhc---CCCCCCCCCCccccc
Q 027227 160 EEDVTTCPICQASPT---------------TPFLALPCQHRYCYY-CLRTRCAA---SPSFRCSRCNEPVIA 212 (226)
Q Consensus 160 ~~~~~~C~iC~~~~~---------------~p~~~~~CgH~fC~~-Ci~~~~~~---~~~~~CP~Cr~~~~~ 212 (226)
.+....|.+|...+. .|+....|+-.|-.. -+...... +..+.|+.|+..+..
T Consensus 14 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~ 85 (106)
T 2ee8_A 14 TKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGFCQ 85 (106)
T ss_dssp CCCCCBCSSSCCBCSSHHHHHHHHHHHCCSCCCBCSSSCCBCSCHHHHHHHGGGSCCCCTTSCSSSCCCCSS
T ss_pred CCcCeECCCCCCccCCHHHHHHHHHHcCCCCCcCCCCccchhCCHHHHHHHHHHhCCCCCeECCCcCCcccC
Confidence 345678999987654 455555677666432 33333332 135789999888765
No 114
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=55.76 E-value=14 Score=26.18 Aligned_cols=47 Identities=15% Similarity=0.001 Sum_probs=35.6
Q ss_pred cccccccCCCCC---CCCeecCCCCcccHHHHHHHHhcCCCCCCCCCCccccc
Q 027227 163 VTTCPICQASPT---TPFLALPCQHRYCYYCLRTRCAASPSFRCSRCNEPVIA 212 (226)
Q Consensus 163 ~~~C~iC~~~~~---~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 212 (226)
-..|..|...+. ..+ ...=|..||..|....... ...|..|++++..
T Consensus 32 CF~C~~C~~~L~~~~~~~-~~~~g~~yC~~cy~~~f~~--~~~C~~C~~~I~~ 81 (122)
T 1m3v_A 32 CLKCSSCQAQLGDIGTSS-YTKSGMILCRNDYIRLFGN--SGAGGSGGHMGSG 81 (122)
T ss_dssp HHCCSSSCCCTTTSEECC-EEETTEEECHHHHHHHHCC--CCSSSCSSCCSCC
T ss_pred CCCcCCCCCcccccCCeE-EEECCeeecHHHHHHHcCC--CCccccCCCCcCc
Confidence 478999998885 344 3567789999999887742 2379999998875
No 115
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=55.66 E-value=3.7 Score=26.86 Aligned_cols=52 Identities=19% Similarity=0.534 Sum_probs=33.4
Q ss_pred CcCcccccccCCCCCC-CC-eecCCCCcccHHHHHHHHhcC--CCCCCCCCCcccc
Q 027227 160 EEDVTTCPICQASPTT-PF-LALPCQHRYCYYCLRTRCAAS--PSFRCSRCNEPVI 211 (226)
Q Consensus 160 ~~~~~~C~iC~~~~~~-p~-~~~~CgH~fC~~Ci~~~~~~~--~~~~CP~Cr~~~~ 211 (226)
..+...|++|...-.. .+ ....|..-|-..|+....... ..+.||.|...+.
T Consensus 15 ~~~~~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~ 70 (75)
T 2k16_A 15 GNQIWICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIK 70 (75)
T ss_dssp SCEEECBTTTTBCCSSCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHC
T ss_pred CCCCcCCCCCCCCCCCCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchh
Confidence 3455679999875432 21 224577778899986544322 4688999976654
No 116
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=52.37 E-value=5.8 Score=27.03 Aligned_cols=46 Identities=15% Similarity=0.394 Sum_probs=32.5
Q ss_pred CcccccccCCCCCCCCeecCCCCcccHHHHHHHHhcCCCCCCCCCCcccc
Q 027227 162 DVTTCPICQASPTTPFLALPCQHRYCYYCLRTRCAASPSFRCSRCNEPVI 211 (226)
Q Consensus 162 ~~~~C~iC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 211 (226)
+=..|..|...+....-...=|..||..|..+. -...|..|++++.
T Consensus 32 ~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~----~~~~C~~C~~~I~ 77 (101)
T 2cup_A 32 TCFRCAKCLHPLANETFVAKDNKILCNKCTTRE----DSPKCKGCFKAIV 77 (101)
T ss_dssp TTCCCSSSCCCTTSSCCEEETTEEECHHHHTTC----CCCBCSSSCCBCC
T ss_pred cCCcccccCCCCCcCeeECcCCEEEChhHhhhh----cCCccccCCCccc
Confidence 347889998877543123456788999997433 2468999999887
No 117
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=50.78 E-value=17 Score=27.27 Aligned_cols=46 Identities=15% Similarity=0.327 Sum_probs=33.1
Q ss_pred CcccccccCCCCCCCCeecCCCCcccHHHHHHHHhcCCCCCCCCCCccccc
Q 027227 162 DVTTCPICQASPTTPFLALPCQHRYCYYCLRTRCAASPSFRCSRCNEPVIA 212 (226)
Q Consensus 162 ~~~~C~iC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 212 (226)
+-..|..|...+.... ...=|..||..|...... ..|..|+.++..
T Consensus 32 ~CF~C~~C~~~L~~~~-f~~~g~~yC~~~y~~~f~----~~C~~C~~~I~~ 77 (169)
T 2rgt_A 32 KCLKCSDCHVPLAERC-FSRGESVYCKDDFFKRFG----TKCAACQLGIPP 77 (169)
T ss_dssp TTSBCTTTCCBCCSCC-EESSSCEECHHHHHHHHS----CBCTTTCCBCCT
T ss_pred ccCccCCCCCcCCCCC-cccCCeeeeccccccccc----ccccccccccCC
Confidence 4578999988776542 345678899999877653 468888887754
No 118
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=49.78 E-value=4.2 Score=30.84 Aligned_cols=15 Identities=27% Similarity=0.512 Sum_probs=11.0
Q ss_pred CCCCCCCcccccccc
Q 027227 201 FRCSRCNEPVIAMQR 215 (226)
Q Consensus 201 ~~CP~Cr~~~~~~~~ 215 (226)
..||.|+.++...+|
T Consensus 149 ~~Cp~CG~~~~~~~~ 163 (165)
T 2lcq_A 149 GVCPDCGSKVKLIPR 163 (165)
T ss_dssp GBCTTTCCBEEECCC
T ss_pred CcCCCCCCcceeCCc
Confidence 379999988765554
No 119
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=48.24 E-value=23 Score=22.78 Aligned_cols=40 Identities=13% Similarity=0.375 Sum_probs=26.8
Q ss_pred cCcccccccCCCCCCCCeecCCCCcccHHHHHHHHhcCCCCCCCCCCcccc
Q 027227 161 EDVTTCPICQASPTTPFLALPCQHRYCYYCLRTRCAASPSFRCSRCNEPVI 211 (226)
Q Consensus 161 ~~~~~C~iC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 211 (226)
.....|..|.+.+... .+..-+..|...| +.|-.|+.++.
T Consensus 13 ~~~~~C~~C~~~I~~~-~~~a~~~~~H~~C----------F~C~~C~~~L~ 52 (79)
T 1x62_A 13 QKLPMCDKCGTGIVGV-FVKLRDRHRHPEC----------YVCTDCGTNLK 52 (79)
T ss_dssp CCCCCCSSSCCCCCSS-CEECSSCEECTTT----------TSCSSSCCCHH
T ss_pred CCCCccccCCCCccCc-EEEECcceeCcCc----------CeeCCCCCCCC
Confidence 4457899998877766 4555666665555 35777777664
No 120
>1x4w_A Hypothetical protein FLJ13222; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=46.91 E-value=10 Score=24.57 Aligned_cols=29 Identities=17% Similarity=0.360 Sum_probs=21.4
Q ss_pred CcCcccccccCCCCCCC----CeecCCCCcccHH
Q 027227 160 EEDVTTCPICQASPTTP----FLALPCQHRYCYY 189 (226)
Q Consensus 160 ~~~~~~C~iC~~~~~~p----~~~~~CgH~fC~~ 189 (226)
......|..|.+....+ +.. -||.+||..
T Consensus 12 ~~~~~rC~~C~kk~gL~~~egf~C-rCg~~FC~~ 44 (67)
T 1x4w_A 12 QKSRRRCFQCQTKLELVQQELGSC-RCGYVFCML 44 (67)
T ss_dssp CSCTTBCSSSCCBCCHHHHHHHCC-SSSCCCCTT
T ss_pred CccCCcchhhCCeecccccCceEe-cCCCEehhc
Confidence 34567999999877765 334 799999983
No 121
>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of [NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET: APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB: 3vti_A
Probab=46.81 E-value=11 Score=35.91 Aligned_cols=53 Identities=21% Similarity=0.466 Sum_probs=33.9
Q ss_pred CCcCcccccccCCCCCCC--------C-eecCCCC--------------------cccHHHHHHHHhcC------CCCCC
Q 027227 159 SEEDVTTCPICQASPTTP--------F-LALPCQH--------------------RYCYYCLRTRCAAS------PSFRC 203 (226)
Q Consensus 159 ~~~~~~~C~iC~~~~~~p--------~-~~~~CgH--------------------~fC~~Ci~~~~~~~------~~~~C 203 (226)
.+.|-..|+-|++.+.+| + ..+.||. ..|-.|-.++-.-. +...|
T Consensus 107 i~pD~a~C~~Cl~e~~dp~~Rry~ypF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~~RRfhAqp~aC 186 (761)
T 3vth_A 107 VSPDMGVCEDCLRELKDPKDRRYRYPFINCTNCGPRFSIIEDIPYDRAKTSMKVFPMCEKCSREYHDPHDRRFHAQPVAC 186 (761)
T ss_dssp CCCCBCCCHHHHHHHTCTTSTTTTCTTCCBTTBBCSGGGBCSSSCCGGGBGGGGSCCCHHHHHHHTCTTSTTTTCTTCCC
T ss_pred cCCCccccHHHHHHhcCCCccccCCCcccCCCCCcchhhhccCCCCCCCCccccCCCCHHHHHHhcCcccccccCCCCcC
Confidence 445667888887544332 2 1356663 35999999886421 35679
Q ss_pred CCCCcccc
Q 027227 204 SRCNEPVI 211 (226)
Q Consensus 204 P~Cr~~~~ 211 (226)
|.|+-.+.
T Consensus 187 ~~CGP~l~ 194 (761)
T 3vth_A 187 FDCGPSLS 194 (761)
T ss_dssp TTTSCCEE
T ss_pred CccCCeeE
Confidence 99987664
No 122
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=46.29 E-value=23 Score=22.66 Aligned_cols=28 Identities=18% Similarity=0.438 Sum_probs=20.4
Q ss_pred cCcccccccCCCCCC-CCeecCCCCcccHH
Q 027227 161 EDVTTCPICQASPTT-PFLALPCQHRYCYY 189 (226)
Q Consensus 161 ~~~~~C~iC~~~~~~-p~~~~~CgH~fC~~ 189 (226)
.....|..|.+.... ++.. -||..||..
T Consensus 13 ~~~~rC~~C~kkvgl~~f~C-rCg~~FC~~ 41 (64)
T 1wg2_A 13 RPNNRCFSCNKKVGVMGFKC-KCGSTFCGS 41 (64)
T ss_dssp CCSCSCTTTCCCCTTSCEEC-TTSCEECSS
T ss_pred CcCCcChhhCCcccccCeEe-ecCCEeccc
Confidence 356799999986443 5545 799999983
No 123
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=45.28 E-value=19 Score=27.41 Aligned_cols=46 Identities=17% Similarity=0.509 Sum_probs=31.2
Q ss_pred CcccccccCCCCCCCCeec--CCCCcccHHHHHHHHhc--------CCCCCCCCCCc
Q 027227 162 DVTTCPICQASPTTPFLAL--PCQHRYCYYCLRTRCAA--------SPSFRCSRCNE 208 (226)
Q Consensus 162 ~~~~C~iC~~~~~~p~~~~--~CgH~fC~~Ci~~~~~~--------~~~~~CP~Cr~ 208 (226)
.+..|.+|.+--.-- ... .|...||..||...+-. .+.+.|=.|.-
T Consensus 78 ~~~yC~wC~~Gg~l~-~Cdn~~C~r~FC~~CI~~nvG~~~~~~i~~~d~W~Cy~C~P 133 (159)
T 3a1b_A 78 YQSYCTICCGGREVL-MCGNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMCGH 133 (159)
T ss_dssp SBSSCTTTSCCSEEE-ECSSTTTCCEEEHHHHHHHTCTTHHHHHHTSSSCCCTTTCS
T ss_pred CcceeeEecCCCeEE-eeCCCCCCCchhHHHHHHhcCHhHHHHHhccCCCEEEecCC
Confidence 457899998643211 112 57789999999876532 35788999964
No 124
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=44.04 E-value=11 Score=28.94 Aligned_cols=14 Identities=21% Similarity=0.453 Sum_probs=10.1
Q ss_pred CCCCCCCccccccc
Q 027227 201 FRCSRCNEPVIAMQ 214 (226)
Q Consensus 201 ~~CP~Cr~~~~~~~ 214 (226)
..||+|+.+-..+.
T Consensus 154 ~~CP~Cg~~~~~F~ 167 (170)
T 3pwf_A 154 EYCPVCGAPKEKFV 167 (170)
T ss_dssp SBCTTTCCBGGGCE
T ss_pred CCCCCCCCCHHHce
Confidence 48999998765443
No 125
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=43.45 E-value=2.7 Score=26.95 Aligned_cols=47 Identities=21% Similarity=0.544 Sum_probs=29.5
Q ss_pred cCcccccccCCCCCCCCeecCCCCcccHHHHHHHHhc--CCCCCCCCCCc
Q 027227 161 EDVTTCPICQASPTTPFLALPCQHRYCYYCLRTRCAA--SPSFRCSRCNE 208 (226)
Q Consensus 161 ~~~~~C~iC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~--~~~~~CP~Cr~ 208 (226)
.++..|.+|.+.-..- ....|...|...|+..-+.. .+.+.||.|..
T Consensus 6 ~~~~~C~vC~~~g~ll-~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~ 54 (66)
T 1xwh_A 6 KNEDECAVCRDGGELI-CCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQ 54 (66)
T ss_dssp SCCCSBSSSSCCSSCE-ECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHH
T ss_pred CCCCCCccCCCCCCEE-EcCCCChhhcccccCCCcCcCCCCCeECccccC
Confidence 4567899998643222 33567777778887643332 24677888854
No 126
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=43.32 E-value=19 Score=25.55 Aligned_cols=48 Identities=15% Similarity=0.328 Sum_probs=34.0
Q ss_pred CcccccccCCCCC---CCCeecCCCCcccHHHHHHHHhcCCCCCCCCCCccccc
Q 027227 162 DVTTCPICQASPT---TPFLALPCQHRYCYYCLRTRCAASPSFRCSRCNEPVIA 212 (226)
Q Consensus 162 ~~~~C~iC~~~~~---~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 212 (226)
+-..|..|...+. .++ ...=|..||..|..+.... ...|..|++++..
T Consensus 28 ~CF~C~~C~~~L~~~~~~~-~~~~g~~yC~~~y~~~~~~--~~~C~~C~~~I~~ 78 (131)
T 2xjy_A 28 DCLSCDLCGCRLGEVGRRL-YYKLGRKLCRRDYLRLFGQ--DGLCASCDKRIRA 78 (131)
T ss_dssp TTCBCTTTCCBCSSTTCCE-EEETTEEECHHHHHHHHCC--CEECTTTCCEECT
T ss_pred HHcccCcCCCccccCCCeE-EEECCEEeecCchhhhCCC--ccChhhcCCccCc
Confidence 4478889988774 353 4566788999998776632 2279999888864
No 127
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=43.05 E-value=19 Score=27.43 Aligned_cols=45 Identities=16% Similarity=0.330 Sum_probs=29.4
Q ss_pred cccccccCCCCCCCCeecCCCCcccHHHHHHHHhcCCCCCCCCCCccccc
Q 027227 163 VTTCPICQASPTTPFLALPCQHRYCYYCLRTRCAASPSFRCSRCNEPVIA 212 (226)
Q Consensus 163 ~~~C~iC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 212 (226)
-+.|..|...+.... -..=|..||..|..... ...|..|+.++..
T Consensus 87 CF~C~~C~~~L~~~~-f~~~g~~yC~~~y~~~f----~~kC~~C~~~I~~ 131 (182)
T 2jtn_A 87 CLKCSDCHVPLAERC-FSRGESVYCKDDFFKRF----GTKCAACQLGIPP 131 (182)
T ss_dssp TTSCTTTCCCCSSCC-EEETTEEECHHHHHHTT----SCCCTTTCCCCCS
T ss_pred cCccCCCCCccCCCc-eeECCEeeecCcccccc----ccccccCCCccCC
Confidence 467777776665432 23456778988876544 3478888887753
No 128
>4g9i_A Hydrogenase maturation protein HYPF; zinc finger, ATP binding, carbamoyla transferase; 4.50A {Thermococcus kodakarensis}
Probab=42.34 E-value=10 Score=36.18 Aligned_cols=27 Identities=15% Similarity=0.373 Sum_probs=19.5
Q ss_pred cccHHHHHHHHhcC------CCCCCCCCCcccc
Q 027227 185 RYCYYCLRTRCAAS------PSFRCSRCNEPVI 211 (226)
Q Consensus 185 ~fC~~Ci~~~~~~~------~~~~CP~Cr~~~~ 211 (226)
..|-.|-.++-.-. +...||.|+-.+.
T Consensus 157 ~mC~~C~~EY~dp~dRRfhAqp~aC~~CGP~l~ 189 (772)
T 4g9i_A 157 PMCDFCRSEYEDPLNRRYHAEPTACPVCGPSYR 189 (772)
T ss_dssp CCCHHHHHHHHCSSSTTTTCTTCCCTTTSCCEE
T ss_pred CCChhHHHHhCCCCCCCCcCCCCCCccCCceEE
Confidence 35999999886421 3567999987654
No 129
>2uzg_A Ubiquitin carboxyl-terminal hydrolase 33; UBL conjugation pathway, DE-ubiquitination, alternative splicing, metal-binding, thiol protease; NMR {Homo sapiens} SCOP: g.44.1.5
Probab=42.15 E-value=13 Score=25.67 Aligned_cols=27 Identities=22% Similarity=0.438 Sum_probs=21.0
Q ss_pred cccccccCCCCCCCCeecC--CCCcccHH
Q 027227 163 VTTCPICQASPTTPFLALP--CQHRYCYY 189 (226)
Q Consensus 163 ~~~C~iC~~~~~~p~~~~~--CgH~fC~~ 189 (226)
...|..|...-.+.+..+. |||++|.+
T Consensus 25 ~~~C~~C~~~~~~lw~CL~~~Cg~vgCgr 53 (97)
T 2uzg_A 25 LGTCQDCKVQGPNLWACLENRCSYVGCGE 53 (97)
T ss_dssp TTCCSSSCCCCSSCEEECCTTCCCEECCT
T ss_pred CCcCcCcCCCCCCceeeecccCCCcccCC
Confidence 3579999966666567888 99999943
No 130
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=41.37 E-value=21 Score=23.11 Aligned_cols=51 Identities=16% Similarity=0.380 Sum_probs=27.0
Q ss_pred CcccccccCCCCC---------------CCCeecCCCCcccHHH-HHHHHhc---CCCCCCCCCCccccc
Q 027227 162 DVTTCPICQASPT---------------TPFLALPCQHRYCYYC-LRTRCAA---SPSFRCSRCNEPVIA 212 (226)
Q Consensus 162 ~~~~C~iC~~~~~---------------~p~~~~~CgH~fC~~C-i~~~~~~---~~~~~CP~Cr~~~~~ 212 (226)
....|++|...+. .|+....|+-.|-..- +...+.. ...+.|+.|+..+..
T Consensus 7 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~ 76 (96)
T 2dmd_A 7 GPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRN 76 (96)
T ss_dssp CCCCBTTTTBCCCCHHHHHHHGGGCCCCCSEECSSSCCEESSHHHHHHHHHHSCCCCCEECSSSSCEESS
T ss_pred cCeECCCCCCccCCHHHHHHHHHhcCCCCCEeCCCCCCccCCHHHHHHHHHHhCCCCCccCCCCCCccCC
Confidence 3456777765443 3333444555553322 2233322 235789999987765
No 131
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=40.22 E-value=9.6 Score=28.11 Aligned_cols=48 Identities=21% Similarity=0.558 Sum_probs=28.7
Q ss_pred cCcccccccCCCCC---C-CCeecCCCCcccHHHHHHHH--hcCCCCCCCCCCc
Q 027227 161 EDVTTCPICQASPT---T-PFLALPCQHRYCYYCLRTRC--AASPSFRCSRCNE 208 (226)
Q Consensus 161 ~~~~~C~iC~~~~~---~-p~~~~~CgH~fC~~Ci~~~~--~~~~~~~CP~Cr~ 208 (226)
.++..|.+|...+. + ......|.|.+|..|-...- ..+..+.|-+|.+
T Consensus 53 ~~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~~~~~~~~~~W~C~vC~k 106 (134)
T 1zbd_B 53 DGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVETSNNRPHPVWLCKICLE 106 (134)
T ss_dssp CSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEECCCSSSSCCEEEHHHHH
T ss_pred CCCccccccCCCcccccCCCCCCCCCCcccccccCCccCCCCCccceechhhHH
Confidence 46789999998773 1 11345677888888754221 1123466666654
No 132
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=39.99 E-value=25 Score=22.75 Aligned_cols=13 Identities=15% Similarity=0.611 Sum_probs=10.4
Q ss_pred CCCCCCCCccccc
Q 027227 200 SFRCSRCNEPVIA 212 (226)
Q Consensus 200 ~~~CP~Cr~~~~~ 212 (226)
...|+.|+..+..
T Consensus 65 ~~~C~~C~~~f~~ 77 (95)
T 2yt9_A 65 PYICQSCGKGFSR 77 (95)
T ss_dssp SBCCSSSCCCBSS
T ss_pred ceECCCccchhCC
Confidence 5789999988765
No 133
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=39.55 E-value=6.8 Score=26.04 Aligned_cols=15 Identities=20% Similarity=0.614 Sum_probs=12.6
Q ss_pred CCCCcccHHHHHHHH
Q 027227 181 PCQHRYCYYCLRTRC 195 (226)
Q Consensus 181 ~CgH~fC~~Ci~~~~ 195 (226)
.||+.||..|-..|.
T Consensus 55 ~C~~~FC~~C~~~wH 69 (80)
T 2jmo_A 55 GCGFAFCRECKEAYH 69 (80)
T ss_dssp CCSCCEETTTTEECC
T ss_pred CCCCeeccccCcccc
Confidence 699999999987654
No 134
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=39.15 E-value=20 Score=21.17 Aligned_cols=44 Identities=20% Similarity=0.678 Sum_probs=27.9
Q ss_pred cccccCCCCC-CC-CeecCCCCcccHHHHHHHHhc--CCCCCCCCCCc
Q 027227 165 TCPICQASPT-TP-FLALPCQHRYCYYCLRTRCAA--SPSFRCSRCNE 208 (226)
Q Consensus 165 ~C~iC~~~~~-~p-~~~~~CgH~fC~~Ci~~~~~~--~~~~~CP~Cr~ 208 (226)
.|.+|.+.-. +. ..-..|...|-..|+..-+.+ ++.+.||.|..
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 4888875432 11 123567778899998654433 24688999965
No 135
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=38.98 E-value=13 Score=28.00 Aligned_cols=47 Identities=19% Similarity=0.428 Sum_probs=31.5
Q ss_pred cCcccccccCCCCC---CC-CeecCCCCcccHHHHHHHHhcCCCCCCCCCCc
Q 027227 161 EDVTTCPICQASPT---TP-FLALPCQHRYCYYCLRTRCAASPSFRCSRCNE 208 (226)
Q Consensus 161 ~~~~~C~iC~~~~~---~p-~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~ 208 (226)
.++..|.+|...+. ++ .+...|.|.+|..|-. +...+..+.|-+|.+
T Consensus 66 ~~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~~-~~~~~~~W~C~vC~k 116 (153)
T 2zet_C 66 LNETHCARCLQPYRLLLNSRRQCLECSLFVCKSCSH-AHPEEQGWLCDPCHL 116 (153)
T ss_dssp GGGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGEE-CCSSSSSCEEHHHHH
T ss_pred CCCccchhhcCccccccCCCCcCCCCCchhhccccc-ccCCCCcEeeHHHHH
Confidence 35789999998642 22 2456799999999963 333335677777754
No 136
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=38.92 E-value=4 Score=25.53 Aligned_cols=47 Identities=21% Similarity=0.547 Sum_probs=28.3
Q ss_pred CcccccccCCCCCCCCeecCCCCcccHHHHHHHHhc--CCCCCCCCCCcc
Q 027227 162 DVTTCPICQASPTTPFLALPCQHRYCYYCLRTRCAA--SPSFRCSRCNEP 209 (226)
Q Consensus 162 ~~~~C~iC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~--~~~~~CP~Cr~~ 209 (226)
.+..|.+|.+.-..- ....|...|...|+..-+.. .+.+.||.|...
T Consensus 4 ~~~~C~vC~~~g~ll-~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 52 (60)
T 2puy_A 4 HEDFCSVCRKSGQLL-MCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQ 52 (60)
T ss_dssp CCSSCTTTCCCSSCE-ECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHH
T ss_pred CCCCCcCCCCCCcEE-EcCCCCcCEECCcCCCCcCCCCCCceEChhccCh
Confidence 456788888643222 33567777888887644332 235778887543
No 137
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=37.88 E-value=2 Score=29.36 Aligned_cols=53 Identities=19% Similarity=0.493 Sum_probs=33.6
Q ss_pred cCcccccccCCCCC---CCC-eecCCCCcccHHHHHHHHh------cCCCCCCCCCCcccccc
Q 027227 161 EDVTTCPICQASPT---TPF-LALPCQHRYCYYCLRTRCA------ASPSFRCSRCNEPVIAM 213 (226)
Q Consensus 161 ~~~~~C~iC~~~~~---~p~-~~~~CgH~fC~~Ci~~~~~------~~~~~~CP~Cr~~~~~~ 213 (226)
+.+..|.+|.+.-. +.. ....|...|...|+...+. ..+.+.|+.|.......
T Consensus 14 e~~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~~~ 76 (88)
T 1wev_A 14 EMGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMKRM 76 (88)
T ss_dssp HHCCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHCCS
T ss_pred CCCCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhhhh
Confidence 35678999986522 331 2245777788888865443 23578899997655533
No 138
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=37.75 E-value=12 Score=26.28 Aligned_cols=48 Identities=19% Similarity=0.632 Sum_probs=30.2
Q ss_pred CcCcccccccCCCCCC-C-CeecCCCCcccHHHHHHHHhc--CCCCCCCCCC
Q 027227 160 EEDVTTCPICQASPTT-P-FLALPCQHRYCYYCLRTRCAA--SPSFRCSRCN 207 (226)
Q Consensus 160 ~~~~~~C~iC~~~~~~-p-~~~~~CgH~fC~~Ci~~~~~~--~~~~~CP~Cr 207 (226)
..++..|.+|.+.-.. + ..-..|+..|...|+...... ...+.||.|.
T Consensus 4 ~~~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~ 55 (111)
T 2ysm_A 4 GSSGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECK 55 (111)
T ss_dssp CCCCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred CCCCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCccccccccCccCCcCC
Confidence 3567789999765332 2 133678888888998655432 2356677663
No 139
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=36.57 E-value=2.9 Score=28.26 Aligned_cols=42 Identities=21% Similarity=0.605 Sum_probs=20.9
Q ss_pred ccccccCCCCCCCCeecCCCCcccHHHHHHHHhcCCCCCCCCCCcccccc
Q 027227 164 TTCPICQASPTTPFLALPCQHRYCYYCLRTRCAASPSFRCSRCNEPVIAM 213 (226)
Q Consensus 164 ~~C~iC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~ 213 (226)
..||.|...+..- =++.+|..|-..... ..-||.|++++..+
T Consensus 3 ~~CP~C~~~l~~~-----~~~~~C~~C~~~~~~---~afCPeCgq~Le~l 44 (81)
T 2jrp_A 3 ITCPVCHHALERN-----GDTAHCETCAKDFSL---QALCPDCRQPLQVL 44 (81)
T ss_dssp CCCSSSCSCCEEC-----SSEEECTTTCCEEEE---EEECSSSCSCCCEE
T ss_pred CCCCCCCCccccC-----CCceECccccccCCC---cccCcchhhHHHHH
Confidence 4677777544311 113346666433221 12577777666543
No 140
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=36.46 E-value=30 Score=23.37 Aligned_cols=57 Identities=19% Similarity=0.342 Sum_probs=33.4
Q ss_pred cCcccccccCCCCC--CCCeecCCCCcccHHHHHHHHhcCCCCCCCCCCccccccccccccCCCCC
Q 027227 161 EDVTTCPICQASPT--TPFLALPCQHRYCYYCLRTRCAASPSFRCSRCNEPVIAMQRHGVINPKIS 224 (226)
Q Consensus 161 ~~~~~C~iC~~~~~--~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~ 224 (226)
.....|..|.+... +++.. .||..||..= ... +.-.|+.- .....-+.+.-.+|.+.
T Consensus 23 ~~~~rC~~C~kkvgl~~~f~C-rCg~~FC~~H---Ry~--e~H~C~fD-yK~~gr~~iak~NPvV~ 81 (85)
T 1wff_A 23 KIMKHCFLCGKKTGLATSFEC-RCGNNFCASH---RYA--EAHGCNYD-YKSAGRRYLEEANPVSG 81 (85)
T ss_dssp CCCCBCSSSCCBCSSSSCEEC-TTCCEECTTT---CST--GGGTCCSC-CSSSCCCCCCCCCCCCC
T ss_pred ccCccchhhCCeecccCCeEc-CCCCEecccC---CCc--cCCCCcch-hhHHHHHHHHHHCCeec
Confidence 34579999987544 48655 5999999842 221 23457652 22222344555577763
No 141
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=36.42 E-value=15 Score=28.84 Aligned_cols=14 Identities=21% Similarity=0.444 Sum_probs=10.0
Q ss_pred CCCCCCCCcccccc
Q 027227 200 SFRCSRCNEPVIAM 213 (226)
Q Consensus 200 ~~~CP~Cr~~~~~~ 213 (226)
...||+|+.+-..+
T Consensus 186 p~~CP~C~~~k~~F 199 (202)
T 1yuz_A 186 FEKCPICFRPKDTF 199 (202)
T ss_dssp CSBCTTTCCBGGGC
T ss_pred CCCCCCCCCChHHh
Confidence 36899999865443
No 142
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=36.13 E-value=9.4 Score=26.77 Aligned_cols=10 Identities=20% Similarity=0.853 Sum_probs=5.2
Q ss_pred CCCCCCcccc
Q 027227 202 RCSRCNEPVI 211 (226)
Q Consensus 202 ~CP~Cr~~~~ 211 (226)
.||+|+.++.
T Consensus 49 ~CPvCgs~l~ 58 (112)
T 1l8d_A 49 KCPVCGRELT 58 (112)
T ss_dssp ECTTTCCEEC
T ss_pred CCCCCCCcCC
Confidence 4555555443
No 143
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=35.32 E-value=29 Score=22.41 Aligned_cols=47 Identities=17% Similarity=0.574 Sum_probs=29.1
Q ss_pred cCcccccccCCCCCCCCeecC-----CC-CcccHHHHHHHHhcCCCCCCCCCCccc
Q 027227 161 EDVTTCPICQASPTTPFLALP-----CQ-HRYCYYCLRTRCAASPSFRCSRCNEPV 210 (226)
Q Consensus 161 ~~~~~C~iC~~~~~~p~~~~~-----Cg-H~fC~~Ci~~~~~~~~~~~CP~Cr~~~ 210 (226)
.+...| +|.+..... ++. |. .-|...|+.-.....+.+.||.|...-
T Consensus 14 ~~~~~C-~C~~~~~g~--MI~CD~~~C~~~wfH~~Cvgl~~~p~g~w~Cp~C~~~~ 66 (71)
T 1wen_A 14 NEPTYC-LCHQVSYGE--MIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQES 66 (71)
T ss_dssp TSCCCS-TTCCCSCSS--EECCSCSSCSCCCEETTTTTCSSCCSSCCCCTTTSSCS
T ss_pred CCCCEE-ECCCCCCCC--EeEeeCCCCCCccEecccCCcCcCCCCCEECCCCCccc
Confidence 455677 898754443 334 44 468888986222123578999997643
No 144
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=35.06 E-value=28 Score=23.81 Aligned_cols=46 Identities=17% Similarity=0.594 Sum_probs=28.3
Q ss_pred cCcccccccCCCCCCCCeecC-----CC-CcccHHHHHHHHhcCCCCCCCCCCcc
Q 027227 161 EDVTTCPICQASPTTPFLALP-----CQ-HRYCYYCLRTRCAASPSFRCSRCNEP 209 (226)
Q Consensus 161 ~~~~~C~iC~~~~~~p~~~~~-----Cg-H~fC~~Ci~~~~~~~~~~~CP~Cr~~ 209 (226)
.+...| +|.+..... ++. |. .-|...|+.-.....+.+.||.|...
T Consensus 34 ~e~~yC-iC~~~~~g~--MI~CD~~dC~~~WfH~~CVgl~~~p~g~W~Cp~C~~~ 85 (91)
T 1weu_A 34 NEPTYC-LCHQVSYGE--MIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQE 85 (91)
T ss_dssp CCCBCS-TTCCBCCSC--CCCCSCSSCSCCCCCSTTTTCSSCCCSSCCCTTTCCC
T ss_pred CCCcEE-ECCCCCCCC--EeEecCCCCCCCCEecccCCcCcCCCCCEECcCccCc
Confidence 345667 998754433 334 44 45888888632222347899999754
No 145
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=34.82 E-value=8 Score=25.19 Aligned_cols=49 Identities=14% Similarity=0.392 Sum_probs=31.0
Q ss_pred CcCcccccccCCCC---CCCC-eecCCCCcccHHHHHHHHhcCCCCCCCCCCc
Q 027227 160 EEDVTTCPICQASP---TTPF-LALPCQHRYCYYCLRTRCAASPSFRCSRCNE 208 (226)
Q Consensus 160 ~~~~~~C~iC~~~~---~~p~-~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~ 208 (226)
..++..|.+|.+.- .+.. ....|.-.|-..|+......++.+.||.|..
T Consensus 13 ~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~ 65 (71)
T 2ku3_A 13 IDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQ 65 (71)
T ss_dssp CCSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcC
Confidence 45677899998642 2221 2255777788888864433335788988854
No 146
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Probab=34.67 E-value=36 Score=22.99 Aligned_cols=13 Identities=23% Similarity=0.973 Sum_probs=7.9
Q ss_pred CCCCCCCCccccc
Q 027227 200 SFRCSRCNEPVIA 212 (226)
Q Consensus 200 ~~~CP~Cr~~~~~ 212 (226)
.+.|+.|+..+..
T Consensus 94 ~~~C~~C~~~f~~ 106 (124)
T 2dlq_A 94 PYKCSSCSQQFMQ 106 (124)
T ss_dssp SEECSSSCCEESS
T ss_pred CccCCCccchhCC
Confidence 3567777666543
No 147
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=34.36 E-value=63 Score=20.55 Aligned_cols=28 Identities=18% Similarity=0.611 Sum_probs=20.3
Q ss_pred cCcccccccCCCCCC-CCeecCCCCcccHH
Q 027227 161 EDVTTCPICQASPTT-PFLALPCQHRYCYY 189 (226)
Q Consensus 161 ~~~~~C~iC~~~~~~-p~~~~~CgH~fC~~ 189 (226)
.....|..|.+...- ++.. .||..||..
T Consensus 13 ~~~~rC~~C~kkvgl~~f~C-rCg~~FC~~ 41 (64)
T 1wfh_A 13 QRPNRCTVCRKRVGLTGFMC-RCGTTFCGS 41 (64)
T ss_dssp SSCCCCTTTCCCCCTTCEEC-SSSCEECTT
T ss_pred CcCCcChhhCCccCccCEEe-ecCCEeccc
Confidence 456799999986443 5444 699999984
No 148
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=33.11 E-value=3.8 Score=26.03 Aligned_cols=51 Identities=18% Similarity=0.460 Sum_probs=31.4
Q ss_pred CcCcccccccCCCCC---CC-CeecCCCCcccHHHHHHHHh-----cCCCCCCCCCCccc
Q 027227 160 EEDVTTCPICQASPT---TP-FLALPCQHRYCYYCLRTRCA-----ASPSFRCSRCNEPV 210 (226)
Q Consensus 160 ~~~~~~C~iC~~~~~---~p-~~~~~CgH~fC~~Ci~~~~~-----~~~~~~CP~Cr~~~ 210 (226)
..++..|.+|...-. +. .....|...|...|+...+. .++.+.||.|....
T Consensus 3 ~~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~ 62 (66)
T 2yt5_A 3 SGSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFAT 62 (66)
T ss_dssp CCCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHTT
T ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCcc
Confidence 345678999986521 22 12356777788888764321 23568899886543
No 149
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.44 E-value=59 Score=20.13 Aligned_cols=34 Identities=18% Similarity=0.365 Sum_probs=21.2
Q ss_pred cccccccCCCCCCCCeecCCCCcccHHHHHHHHh
Q 027227 163 VTTCPICQASPTTPFLALPCQHRYCYYCLRTRCA 196 (226)
Q Consensus 163 ~~~C~iC~~~~~~p~~~~~CgH~fC~~Ci~~~~~ 196 (226)
-..|..|...+....-...=|..||..|..+.+.
T Consensus 33 CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~~~ 66 (72)
T 1x61_A 33 CFVCSTCRAQLRGQHFYAVERRAYCEGCYVATLE 66 (72)
T ss_dssp TCBCSSSCCBCTTSCEEESSSCEEEHHHHHHHHH
T ss_pred CCcccccCCcCCcCcCEeeCCeEECHHHHHHHHc
Confidence 4677777766643212344567788888776664
No 150
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=32.16 E-value=3 Score=28.23 Aligned_cols=29 Identities=21% Similarity=0.557 Sum_probs=18.9
Q ss_pred ccccCCCC-----CCCCeecCCCCcccHHHHHHH
Q 027227 166 CPICQASP-----TTPFLALPCQHRYCYYCLRTR 194 (226)
Q Consensus 166 C~iC~~~~-----~~p~~~~~CgH~fC~~Ci~~~ 194 (226)
||-|...+ ..+.....|++.||..|-..|
T Consensus 28 CP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~~w 61 (86)
T 2ct7_A 28 CAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQW 61 (86)
T ss_dssp CSSSCCCEECCCSCSCEECTTTCCEECSSSCSBC
T ss_pred CcCCCchheecCCCCceEeCCCCCccccccCCch
Confidence 88776532 122123349999999998766
No 151
>3c5k_A HD6, histone deacetylase 6; HDAC6, zinc finger, actin-binding, chromatin regulator, cytoplasm, hydrolase, metal-binding, nucleus, phosphoprotein; 1.55A {Homo sapiens} PDB: 3gv4_A 3phd_A
Probab=31.90 E-value=16 Score=25.81 Aligned_cols=25 Identities=24% Similarity=0.671 Sum_probs=19.7
Q ss_pred cccccccCCCCCCCCeecCCCCcccH
Q 027227 163 VTTCPICQASPTTPFLALPCQHRYCY 188 (226)
Q Consensus 163 ~~~C~iC~~~~~~p~~~~~CgH~fC~ 188 (226)
...|..|...-.. ++.+.|||++|.
T Consensus 24 ~~~C~~C~~~~~~-W~CL~CG~vgCg 48 (109)
T 3c5k_A 24 TQPCGDCGTIQEN-WVCLSCYQVYCG 48 (109)
T ss_dssp TCCCTTTCCCSSE-EEETTTCCEEEC
T ss_pred CCcCccccCCCCe-eeeeecCccccC
Confidence 4679999876544 578999999994
No 152
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=31.55 E-value=46 Score=25.44 Aligned_cols=45 Identities=18% Similarity=0.185 Sum_probs=30.6
Q ss_pred cccccccCCCCCCCCeecCCCCcccHHHHHHHHhcCCCCCCCCCCcccc
Q 027227 163 VTTCPICQASPTTPFLALPCQHRYCYYCLRTRCAASPSFRCSRCNEPVI 211 (226)
Q Consensus 163 ~~~C~iC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 211 (226)
-..|..|...+....-...=|..||..|...... ..|..|+..+.
T Consensus 142 CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~f~----~kc~~C~~~~g 186 (192)
T 1b8t_A 142 CFRCAKCGKSLESTTLADKDGEIYCKGCYAKNFG----PKGFGFGQGAG 186 (192)
T ss_dssp TCBCTTTCCBCCSSSEEEETTEEEEHHHHHHHTC----CCCCCCCCCCC
T ss_pred cCCccccCCCCCCCcccccCCEEeCHHHHHHhcC----CcCCCCCCccc
Confidence 4678888776643212455678899999877663 46888887654
No 153
>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}
Probab=31.45 E-value=18 Score=20.90 Aligned_cols=41 Identities=22% Similarity=0.458 Sum_probs=22.0
Q ss_pred cccccccCCCCCCCCeecCCCCcccHHHHHHHHhcCCCCCCCCCCccccc
Q 027227 163 VTTCPICQASPTTPFLALPCQHRYCYYCLRTRCAASPSFRCSRCNEPVIA 212 (226)
Q Consensus 163 ~~~C~iC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 212 (226)
...|++|...+... ..+ -.| +... .......|+.|+..+..
T Consensus 4 ~~~C~~C~~~f~~~-~~l-~~H------~~~h-~~~~~~~C~~C~~~f~~ 44 (57)
T 3uk3_C 4 SRECSYCGKFFRSN-YYL-NIH------LRTH-TGEKPYKCEFCEYAAAQ 44 (57)
T ss_dssp -CBCTTTCCBCSCH-HHH-HHH------HHHH-HCCCCEECSSSSCEESS
T ss_pred CccCCCCcchhCCh-HHH-HHH------HHHc-CCCCCcCCCCCcchhCC
Confidence 45788887766655 211 111 1111 11235789999987764
No 154
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=31.37 E-value=30 Score=18.34 Aligned_cols=18 Identities=22% Similarity=0.547 Sum_probs=13.1
Q ss_pred CCCCCCCccccccccccc
Q 027227 201 FRCSRCNEPVIAMQRHGV 218 (226)
Q Consensus 201 ~~CP~Cr~~~~~~~~~~~ 218 (226)
..||.|++.+-..++...
T Consensus 4 ~~C~~C~k~Vy~~Ek~~~ 21 (31)
T 1zfo_A 4 PNCARCGKIVYPTEKVNC 21 (31)
T ss_dssp CBCSSSCSBCCGGGCCCS
T ss_pred CcCCccCCEEecceeEEE
Confidence 479999998876665543
No 155
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=31.28 E-value=17 Score=25.35 Aligned_cols=12 Identities=25% Similarity=0.736 Sum_probs=10.6
Q ss_pred ccHHHHHHHHhc
Q 027227 186 YCYYCLRTRCAA 197 (226)
Q Consensus 186 fC~~Ci~~~~~~ 197 (226)
||..|+..|...
T Consensus 43 FCRNCLskWy~~ 54 (105)
T 2o35_A 43 FCRNCLSNWYRE 54 (105)
T ss_dssp CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999864
No 156
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.12 E-value=63 Score=20.69 Aligned_cols=38 Identities=18% Similarity=0.366 Sum_probs=21.4
Q ss_pred cccccccCCCCCCCCeecCCCCcccHHHHHHHHhcCCCCCCCCCCcccc
Q 027227 163 VTTCPICQASPTTPFLALPCQHRYCYYCLRTRCAASPSFRCSRCNEPVI 211 (226)
Q Consensus 163 ~~~C~iC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 211 (226)
...|..|.+.+... .+..-|..|...| +.|..|+.++.
T Consensus 15 ~~~C~~C~~~I~~~-~v~a~~~~~H~~C----------F~C~~C~~~L~ 52 (79)
T 2cor_A 15 KYICQKCHAIIDEQ-PLIFKNDPYHPDH----------FNCANCGKELT 52 (79)
T ss_dssp CCBCTTTCCBCCSC-CCCCSSSCCCTTT----------SBCSSSCCBCC
T ss_pred CCCCccCCCEecce-EEEECcceeCCCC----------CEeCCCCCccC
Confidence 45677777766655 2344454444443 35666666654
No 157
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=31.01 E-value=69 Score=20.93 Aligned_cols=41 Identities=17% Similarity=0.389 Sum_probs=27.3
Q ss_pred cCcccccccCCCCCCCCeecCCCCcccHHHHHHHHhcCCCCCCCCCCccccc
Q 027227 161 EDVTTCPICQASPTTPFLALPCQHRYCYYCLRTRCAASPSFRCSRCNEPVIA 212 (226)
Q Consensus 161 ~~~~~C~iC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 212 (226)
.....|..|.+.+... .+..-+..|...| +.|-.|+.++..
T Consensus 23 ~~~~~C~~C~~~I~~~-~~~a~~~~~H~~C----------F~C~~C~~~L~~ 63 (89)
T 1x64_A 23 QRMPLCDKCGSGIVGA-VVKARDKYRHPEC----------FVCADCNLNLKQ 63 (89)
T ss_dssp CSCCBCTTTCCBCCSC-CEESSSCEECTTT----------CCCSSSCCCTTT
T ss_pred CcCCCcccCCCEeccc-EEEECCceECccC----------CEecCCCCCCCC
Confidence 3456899998877765 3455666665555 467788777653
No 158
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=30.85 E-value=18 Score=25.24 Aligned_cols=12 Identities=25% Similarity=0.683 Sum_probs=10.6
Q ss_pred ccHHHHHHHHhc
Q 027227 186 YCYYCLRTRCAA 197 (226)
Q Consensus 186 fC~~Ci~~~~~~ 197 (226)
||..|+..|...
T Consensus 42 FCRNCLskWy~~ 53 (104)
T 3fyb_A 42 FCRNCLAKWLME 53 (104)
T ss_dssp CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999864
No 159
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=30.32 E-value=8.8 Score=24.09 Aligned_cols=49 Identities=16% Similarity=0.423 Sum_probs=29.5
Q ss_pred CcCcccccccCCCCC--CCC-eecCCCCcccHHHHHHHHhc---CCCCCCCCCCc
Q 027227 160 EEDVTTCPICQASPT--TPF-LALPCQHRYCYYCLRTRCAA---SPSFRCSRCNE 208 (226)
Q Consensus 160 ~~~~~~C~iC~~~~~--~p~-~~~~CgH~fC~~Ci~~~~~~---~~~~~CP~Cr~ 208 (226)
.++...|++|..... ..+ ....|..-|...|+.-.... ...+.||.|+.
T Consensus 3 ~~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~ 57 (64)
T 1we9_A 3 SGSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSN 57 (64)
T ss_dssp CSSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHT
T ss_pred CCCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcC
Confidence 356678999987653 221 12346666777787433221 24688999965
No 160
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=30.30 E-value=42 Score=21.22 Aligned_cols=43 Identities=16% Similarity=0.220 Sum_probs=30.3
Q ss_pred CcccccccCCCCCC-CCeecCCCCcccH-HHHHHHHhcCCCCCCCCCCcc
Q 027227 162 DVTTCPICQASPTT-PFLALPCQHRYCY-YCLRTRCAASPSFRCSRCNEP 209 (226)
Q Consensus 162 ~~~~C~iC~~~~~~-p~~~~~CgH~fC~-~Ci~~~~~~~~~~~CP~Cr~~ 209 (226)
+-..|..|...+.. ++ ...=|..||. .|..... ...|..|+..
T Consensus 26 ~CF~C~~C~~~L~~~~~-~~~~g~~yC~~~cy~~~f----~~~C~~C~~~ 70 (76)
T 1iml_A 26 PCLKCEKCGKTLTSGGH-AEHEGKPYCNHPCYSAMF----GPKGFGRGGA 70 (76)
T ss_dssp TTCBCTTTCCBCCTTTE-EEETTEEEETTTHHHHHS----SCCCSSCCCS
T ss_pred CCCCccccCccCCCCce-ECcCCeEeeCHHHHHHHh----CccCCCcCCc
Confidence 35789999887765 43 4456788999 6987655 3468888754
No 161
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=30.19 E-value=17 Score=28.22 Aligned_cols=14 Identities=21% Similarity=0.622 Sum_probs=10.0
Q ss_pred CCCCCCcccccccc
Q 027227 202 RCSRCNEPVIAMQR 215 (226)
Q Consensus 202 ~CP~Cr~~~~~~~~ 215 (226)
.||+|+.+-..+..
T Consensus 173 ~CP~C~~~k~~f~~ 186 (191)
T 1lko_A 173 LCPACAHPKAHFEL 186 (191)
T ss_dssp BCTTTCCBGGGEEE
T ss_pred CCCCCcCCHHHHHh
Confidence 89999987554443
No 162
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=30.14 E-value=15 Score=28.24 Aligned_cols=48 Identities=21% Similarity=0.258 Sum_probs=32.7
Q ss_pred CcccccccCCCCCC---CCeecCCCCcccHHHHHHHHhcCCCCCCCCCCccccc
Q 027227 162 DVTTCPICQASPTT---PFLALPCQHRYCYYCLRTRCAASPSFRCSRCNEPVIA 212 (226)
Q Consensus 162 ~~~~C~iC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 212 (226)
+-+.|..|...+.. ++ ...=|..||..|....... ...|..|++++..
T Consensus 31 ~CF~C~~C~~~L~~~g~~~-~~~~g~~yC~~cy~~~~~~--~~~C~~C~~~I~~ 81 (188)
T 1rut_X 31 RCLKCSSCQAQLGDIGTSS-YTKSGMILCRNDYIRLFGN--SGACSACGQSIPA 81 (188)
T ss_dssp GGCBCTTTCCBHHHHCSEE-EEETTEEECHHHHHHHHSC--CEECTTTCCEECT
T ss_pred cCcccCCCCcccccCCceE-EEeCCcccccccccccccc--CCccccCCCcccc
Confidence 44788888877653 43 3456788999998776532 1269999888764
No 163
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.47 E-value=33 Score=21.30 Aligned_cols=32 Identities=16% Similarity=0.299 Sum_probs=13.9
Q ss_pred ccccccCCCCCCCCeecCCCCcccHHHHHHHH
Q 027227 164 TTCPICQASPTTPFLALPCQHRYCYYCLRTRC 195 (226)
Q Consensus 164 ~~C~iC~~~~~~p~~~~~CgH~fC~~Ci~~~~ 195 (226)
..|..|...+..-.-...-|..||..|.....
T Consensus 32 F~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~ 63 (70)
T 2d8x_A 32 FRCDLCQEVLADIGFVKNAGRHLCRPCHNREK 63 (70)
T ss_dssp SBCSSSCCBCSSSCCEEETTEEECHHHHHHHH
T ss_pred CEeCCCCCcCCCCccEeECCeEECHHHhhhhc
Confidence 45555554443321122344455555554443
No 164
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=28.67 E-value=28 Score=21.43 Aligned_cols=44 Identities=25% Similarity=0.438 Sum_probs=25.4
Q ss_pred CcCcccccccCCCCCCCCeecCCCCcccHHHHHHHHhcCCCCCCCCCCccccc
Q 027227 160 EEDVTTCPICQASPTTPFLALPCQHRYCYYCLRTRCAASPSFRCSRCNEPVIA 212 (226)
Q Consensus 160 ~~~~~~C~iC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 212 (226)
.+....|.+|...+... ..+ -.| ...-.....+.|+.|++.+..
T Consensus 14 ~~~~~~C~~C~k~f~~~-~~l-~~H-------~~~H~~~~~~~C~~C~k~f~~ 57 (74)
T 2lce_A 14 SDKPYKCDRCQASFRYK-GNL-ASH-------KTVHTGEKPYRCNICGAQFNR 57 (74)
T ss_dssp CCCSBCCTTSSCCBSCH-HHH-HHH-------HHHHCCCCSEECTTTCCEESC
T ss_pred CCCCeECCCCCceeCCH-HHH-HHH-------HHHcCCCCCEECCCCCchhCC
Confidence 34567899998877765 221 111 011111235789999988764
No 165
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=28.59 E-value=16 Score=21.86 Aligned_cols=16 Identities=38% Similarity=0.814 Sum_probs=11.3
Q ss_pred CCCCCCCCCccccccc
Q 027227 199 PSFRCSRCNEPVIAMQ 214 (226)
Q Consensus 199 ~~~~CP~Cr~~~~~~~ 214 (226)
+...||.|+..+-...
T Consensus 22 P~IrCpyCGyrii~Kv 37 (48)
T 4ayb_P 22 PGVRCPYCGYKIIFMV 37 (48)
T ss_dssp SSSCCTTTCCSCEECC
T ss_pred CCcccCccCcEEEEEe
Confidence 4578999998775433
No 166
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=27.88 E-value=12 Score=19.79 Aligned_cols=13 Identities=23% Similarity=0.677 Sum_probs=8.5
Q ss_pred CCCCCCCCccccc
Q 027227 200 SFRCSRCNEPVIA 212 (226)
Q Consensus 200 ~~~CP~Cr~~~~~ 212 (226)
...||+|+.....
T Consensus 3 k~~CpvCk~q~Pd 15 (28)
T 2jvx_A 3 DFCCPKCQYQAPD 15 (28)
T ss_dssp CEECTTSSCEESS
T ss_pred cccCccccccCcC
Confidence 4568888776553
No 167
>1x4v_A Hypothetical protein LOC130617; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.68 E-value=83 Score=19.84 Aligned_cols=39 Identities=18% Similarity=0.502 Sum_probs=26.5
Q ss_pred Ccccccc--cCCCCCCCCeecCCCCcccHHHHHHHHhcCCCCCCCC
Q 027227 162 DVTTCPI--CQASPTTPFLALPCQHRYCYYCLRTRCAASPSFRCSR 205 (226)
Q Consensus 162 ~~~~C~i--C~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~ 205 (226)
....|+. |.+.-..|+....|+..||. .....+ .-.|+.
T Consensus 11 ~~~~Cs~~~Ck~~~ll~f~C~~C~~~FC~---~HR~~e--~H~C~~ 51 (63)
T 1x4v_A 11 FTNKCERAGCRQREMMKLTCERCSRNFCI---KHRHPL--DHDCSG 51 (63)
T ss_dssp TCCCCCSTTCCCCCSSCCBCSSSCCBCCH---HHHSTT--SSCCCS
T ss_pred cCCCCCccCCCCCCccceECCCCCcccCc---ccCCcc--CCcCCC
Confidence 3568988 99776678666669999987 344433 346764
No 168
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.48 E-value=48 Score=20.91 Aligned_cols=32 Identities=13% Similarity=0.175 Sum_probs=17.1
Q ss_pred cccccccCCCCC--CCCeecCCCCcccHHHHHHHH
Q 027227 163 VTTCPICQASPT--TPFLALPCQHRYCYYCLRTRC 195 (226)
Q Consensus 163 ~~~C~iC~~~~~--~p~~~~~CgH~fC~~Ci~~~~ 195 (226)
-..|..|...+. ..+ ...=|..||..|.....
T Consensus 31 CF~C~~C~~~L~~~~~f-~~~~~~~yC~~C~~~~~ 64 (73)
T 1wig_A 31 CALCVRCGQMFAEGEEM-YLQGSSIWHPACRQAAR 64 (73)
T ss_dssp TSCCSSSCCCCCSSCCC-EEETTEEECTTHHHHTS
T ss_pred cCEeCCCCCCCCCCCee-EeeCCEEEChHHChHhh
Confidence 466666666554 232 23345566766665443
No 169
>1x4s_A Protein FON, zinc finger HIT domain containing protein 2; structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.2
Probab=26.98 E-value=29 Score=21.77 Aligned_cols=34 Identities=29% Similarity=0.703 Sum_probs=24.1
Q ss_pred cCcccccccCC--CCCCCCeecCCCCcccH-HHHHHH
Q 027227 161 EDVTTCPICQA--SPTTPFLALPCQHRYCY-YCLRTR 194 (226)
Q Consensus 161 ~~~~~C~iC~~--~~~~p~~~~~CgH~fC~-~Ci~~~ 194 (226)
+....|.||.. .....|....|+-.||. .|...+
T Consensus 9 ~~~~~C~vC~~~~~~~akY~CPrC~~rYCSl~C~k~H 45 (59)
T 1x4s_A 9 EPAGPCGFCPAGEVQPARYTCPRCNAPYCSLRCYRTH 45 (59)
T ss_dssp CCCEEECSSCTTCCEEECEECTTTCCEESSHHHHHHH
T ss_pred CCCCcCcCCCCCcCCCccccCcCCCCCccChHHHHHH
Confidence 44578999985 23344567789999987 777654
No 170
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=26.88 E-value=16 Score=28.39 Aligned_cols=48 Identities=19% Similarity=0.430 Sum_probs=29.2
Q ss_pred ccccccCCCCCCC-----C-eecCCCCcccHHHHHHHH------h---cCCCCCCCCCCcccc
Q 027227 164 TTCPICQASPTTP-----F-LALPCQHRYCYYCLRTRC------A---ASPSFRCSRCNEPVI 211 (226)
Q Consensus 164 ~~C~iC~~~~~~p-----~-~~~~CgH~fC~~Ci~~~~------~---~~~~~~CP~Cr~~~~ 211 (226)
..||+|....... + ....|..-|...|+...- . ......||.|+..-.
T Consensus 3 ~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~~ 65 (183)
T 3lqh_A 3 NFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERHP 65 (183)
T ss_dssp CBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSSS
T ss_pred CcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCCC
Confidence 5699998765433 1 124466677788874321 1 012589999987654
No 171
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=26.76 E-value=55 Score=23.21 Aligned_cols=40 Identities=20% Similarity=0.497 Sum_probs=28.2
Q ss_pred CcccccccCCCCCCCCeecCCCCcccHHHHHHHHhcCCCCCCCCCCcccc
Q 027227 162 DVTTCPICQASPTTPFLALPCQHRYCYYCLRTRCAASPSFRCSRCNEPVI 211 (226)
Q Consensus 162 ~~~~C~iC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 211 (226)
....|..|.+.+...+.+..-|..|...| +.|-.|+.++.
T Consensus 60 ~~~~C~~C~~~I~~~~~v~a~~~~wH~~C----------F~C~~C~~~L~ 99 (123)
T 2l4z_A 60 SWKRCAGCGGKIADRFLLYAMDSYWHSRC----------LKCSSCQAQLG 99 (123)
T ss_dssp SCSBBSSSSSBCCSSSEEEETTEEEETTT----------SBCTTTCCBGG
T ss_pred cCCcCcCCCCCcCCcEEEEeCCcEEcccc----------cCcCcCCCccc
Confidence 45789999988876643455666666655 46888888775
No 172
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=26.74 E-value=36 Score=23.33 Aligned_cols=47 Identities=23% Similarity=0.510 Sum_probs=27.8
Q ss_pred cCcccccccCCCCCCC-C-eecCCCCcccHHHHHHHHhc-CCCCCCCCCCc
Q 027227 161 EDVTTCPICQASPTTP-F-LALPCQHRYCYYCLRTRCAA-SPSFRCSRCNE 208 (226)
Q Consensus 161 ~~~~~C~iC~~~~~~p-~-~~~~CgH~fC~~Ci~~~~~~-~~~~~CP~Cr~ 208 (226)
.+...| ||...-..- + ....|...|-..|+...... ...+.||.|+.
T Consensus 26 ~d~vrC-iC~~~~~~~~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 26 TDVTRC-ICGFTHDDGYMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQP 75 (98)
T ss_dssp CCBCCC-TTSCCSCSSCEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred CCCEEe-ECCCccCCCcEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcC
Confidence 445677 787654332 1 12446667778887543322 13689999974
No 173
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.56 E-value=7.9 Score=26.52 Aligned_cols=49 Identities=20% Similarity=0.535 Sum_probs=26.7
Q ss_pred CcCcccccccCCCCC-CC-CeecCCCCcccHHHHHHHHhc--CCCCCCCCCCc
Q 027227 160 EEDVTTCPICQASPT-TP-FLALPCQHRYCYYCLRTRCAA--SPSFRCSRCNE 208 (226)
Q Consensus 160 ~~~~~~C~iC~~~~~-~p-~~~~~CgH~fC~~Ci~~~~~~--~~~~~CP~Cr~ 208 (226)
..+...|.+|.+.-. +. .....|...|...|+..-+.. .+.+.||.|..
T Consensus 13 ~~~~~~C~vC~~~~~~~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~ 65 (92)
T 2e6r_A 13 FIDSYICQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCIL 65 (92)
T ss_dssp CCCCCCCSSSCCSGGGGGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHH
T ss_pred ccCCCCCccCCCcCCCCCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcC
Confidence 345667999986432 11 122446656666666533322 23566777754
No 174
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.13 E-value=60 Score=20.04 Aligned_cols=30 Identities=17% Similarity=0.382 Sum_probs=13.2
Q ss_pred ccccccCCCCCCCCeecCCCCcccHHHHHH
Q 027227 164 TTCPICQASPTTPFLALPCQHRYCYYCLRT 193 (226)
Q Consensus 164 ~~C~iC~~~~~~p~~~~~CgH~fC~~Ci~~ 193 (226)
..|..|...+....-...=|..||..|...
T Consensus 34 F~C~~C~~~L~~~~~~~~~~~~yC~~cy~~ 63 (72)
T 1wyh_A 34 FLCSGCEQPLGSRSFVPDKGAHYCVPCYEN 63 (72)
T ss_dssp CBCTTTCCBTTTSCEEEETTEEEEHHHHHH
T ss_pred CeECCCCCcCCCCccCCcCCeEECHHHHHH
Confidence 455555544433111223344555555543
No 175
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=25.97 E-value=25 Score=20.86 Aligned_cols=12 Identities=17% Similarity=0.465 Sum_probs=9.2
Q ss_pred CCCCCCCCcccc
Q 027227 200 SFRCSRCNEPVI 211 (226)
Q Consensus 200 ~~~CP~Cr~~~~ 211 (226)
.+.||+|+.+-.
T Consensus 30 dw~CP~Cg~~k~ 41 (46)
T 6rxn_A 30 DWCCPVCGVSKD 41 (46)
T ss_dssp TCBCTTTCCBGG
T ss_pred CCcCcCCCCcHH
Confidence 578999997643
No 176
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}
Probab=25.92 E-value=29 Score=21.52 Aligned_cols=14 Identities=14% Similarity=0.562 Sum_probs=10.5
Q ss_pred CCCCCCCCCccccc
Q 027227 199 PSFRCSRCNEPVIA 212 (226)
Q Consensus 199 ~~~~CP~Cr~~~~~ 212 (226)
....|+.|+..+..
T Consensus 56 ~~~~C~~C~~~f~~ 69 (82)
T 2kmk_A 56 KPHKCQVCGKAFSQ 69 (82)
T ss_dssp CCEECTTTSCEESS
T ss_pred CCCcCCCcchhhCC
Confidence 35789999887764
No 177
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.31 E-value=49 Score=21.75 Aligned_cols=38 Identities=16% Similarity=0.468 Sum_probs=21.8
Q ss_pred cccccccCCCCCCCCeecCCCCcccHHHHHHHHhcCCCCCCCCCCcccc
Q 027227 163 VTTCPICQASPTTPFLALPCQHRYCYYCLRTRCAASPSFRCSRCNEPVI 211 (226)
Q Consensus 163 ~~~C~iC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 211 (226)
...|..|.+.+... .+..-|..|...| +.|..|+.++.
T Consensus 25 ~~~C~~C~~~I~~~-~v~a~~~~~H~~C----------F~C~~C~~~L~ 62 (90)
T 2dar_A 25 TPMCAHCNQVIRGP-FLVALGKSWHPEE----------FNCAHCKNTMA 62 (90)
T ss_dssp CCBBSSSCCBCCSC-EEEETTEEECTTT----------CBCSSSCCBCS
T ss_pred CCCCccCCCEecce-EEEECCccccccC----------CccCCCCCCCC
Confidence 45677777766555 3444455454444 35666666655
No 178
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.21 E-value=37 Score=21.83 Aligned_cols=37 Identities=24% Similarity=0.479 Sum_probs=21.5
Q ss_pred ccccccCCCCCCCCeecCCCCcccHHHHHHHHhcCCCCCCCCCCcccc
Q 027227 164 TTCPICQASPTTPFLALPCQHRYCYYCLRTRCAASPSFRCSRCNEPVI 211 (226)
Q Consensus 164 ~~C~iC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 211 (226)
..|+.|.+.+... .+..-+..|...| +.|-.|+.++.
T Consensus 16 ~~C~~C~~~I~~~-~v~a~~~~wH~~C----------F~C~~C~~~L~ 52 (81)
T 1v6g_A 16 TRCFSCDQFIEGE-VVSALGKTYHPDC----------FVCAVCRLPFP 52 (81)
T ss_dssp CBCTTTCCBCCSC-CEEETTEEECTTT----------SSCSSSCCCCC
T ss_pred CcCccccCEeccc-eEEECCceeCccC----------CccccCCCCCC
Confidence 3688887766644 3444455455444 35666766654
No 179
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.02 E-value=86 Score=20.13 Aligned_cols=41 Identities=17% Similarity=0.468 Sum_probs=22.4
Q ss_pred cCcccccccCCCCCCCCeecCCCCcccHHHHHHHHhcCCCCCCCCCCcccc
Q 027227 161 EDVTTCPICQASPTTPFLALPCQHRYCYYCLRTRCAASPSFRCSRCNEPVI 211 (226)
Q Consensus 161 ~~~~~C~iC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 211 (226)
.....|..|.+.+.....+..-+..|...| +.|..|+.++.
T Consensus 13 ~~~~~C~~C~~~I~~~~~v~a~~~~wH~~C----------F~C~~C~~~L~ 53 (80)
T 2dj7_A 13 RGPSHCAGCKEEIKHGQSLLALDKQWHVSC----------FKCQTCSVILT 53 (80)
T ss_dssp SSCSCCTTTCCCCSSSCCEEETTEEECTTT----------CBCSSSCCBCS
T ss_pred CCCCCCcCcCCeeCCCeEEEECCccccccc----------CCcCcCCCCcC
Confidence 345678888876652212333444444444 35777776664
No 180
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.44 E-value=1.4e+02 Score=19.07 Aligned_cols=42 Identities=19% Similarity=0.392 Sum_probs=23.6
Q ss_pred cCcccccccCCCCCCCCeecCCCCcccHHHHHHHHhcCCCCCCCCCCccccc
Q 027227 161 EDVTTCPICQASPTTPFLALPCQHRYCYYCLRTRCAASPSFRCSRCNEPVIA 212 (226)
Q Consensus 161 ~~~~~C~iC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 212 (226)
.....|..|.+.+.....+..-+..|...| +.|-.|+.++..
T Consensus 13 ~~~~~C~~C~~~I~~~e~v~a~~~~wH~~C----------F~C~~C~~~L~~ 54 (82)
T 2co8_A 13 GAGDLCALCGEHLYVLERLCVNGHFFHRSC----------FRCHTCEATLWP 54 (82)
T ss_dssp CSSCBCSSSCCBCCTTTBCCBTTBCCBTTT----------CBCSSSCCBCCT
T ss_pred CCCCCCcccCCCcccceEEEECCCeeCCCc----------CEEcCCCCCcCC
Confidence 345689999887643212334454444444 356667666553
No 181
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=24.29 E-value=43 Score=20.42 Aligned_cols=24 Identities=8% Similarity=0.249 Sum_probs=10.7
Q ss_pred ccccccCCCCCCCCeecCCCCcccH
Q 027227 164 TTCPICQASPTTPFLALPCQHRYCY 188 (226)
Q Consensus 164 ~~C~iC~~~~~~p~~~~~CgH~fC~ 188 (226)
..|+.|.+.+... .+..-|..|..
T Consensus 6 ~~C~~C~~~I~~~-~~~a~~~~~H~ 29 (66)
T 1nyp_A 6 PICGACRRPIEGR-VVNAMGKQWHV 29 (66)
T ss_dssp CEETTTTEECCSC-EECCTTSBEET
T ss_pred CCCcccCCEecce-EEEECcccccc
Confidence 3455555554433 23333433333
No 182
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=24.18 E-value=37 Score=22.72 Aligned_cols=19 Identities=11% Similarity=0.387 Sum_probs=13.6
Q ss_pred CCCCCCCCCcccccccccc
Q 027227 199 PSFRCSRCNEPVIAMQRHG 217 (226)
Q Consensus 199 ~~~~CP~Cr~~~~~~~~~~ 217 (226)
+.+.||+|+.+-..+...+
T Consensus 59 ddW~CPvCga~K~~F~~i~ 77 (81)
T 2kn9_A 59 DDWSCPDCGAAKSDFEMVE 77 (81)
T ss_dssp TTCCCTTTCCCGGGEEEEC
T ss_pred CCCcCCCCCCCHHHcEEcc
Confidence 3578999998766555544
No 183
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=24.05 E-value=34 Score=20.99 Aligned_cols=15 Identities=13% Similarity=0.348 Sum_probs=10.4
Q ss_pred CCCCCCCCCcccccc
Q 027227 199 PSFRCSRCNEPVIAM 213 (226)
Q Consensus 199 ~~~~CP~Cr~~~~~~ 213 (226)
..+.||.|+..-..+
T Consensus 35 ~dw~CP~Cg~~K~~F 49 (54)
T 4rxn_A 35 DDWVCPLCGVGKDEF 49 (54)
T ss_dssp TTCBCTTTCCBGGGE
T ss_pred CCCcCcCCCCcHHHc
Confidence 367899998764433
No 184
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=23.97 E-value=31 Score=16.05 Aligned_cols=12 Identities=17% Similarity=0.736 Sum_probs=7.9
Q ss_pred CCCCCCCccccc
Q 027227 201 FRCSRCNEPVIA 212 (226)
Q Consensus 201 ~~CP~Cr~~~~~ 212 (226)
..|+.|+..+..
T Consensus 3 ~~C~~C~~~f~~ 14 (29)
T 2m0e_A 3 HKCPHCDKKFNQ 14 (29)
T ss_dssp CCCSSCCCCCCT
T ss_pred CcCCCCCcccCC
Confidence 467777776653
No 185
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.64 E-value=61 Score=19.94 Aligned_cols=31 Identities=19% Similarity=0.518 Sum_probs=15.4
Q ss_pred cccccccCCCCCC-CCeecCCCCcccHHHHHHH
Q 027227 163 VTTCPICQASPTT-PFLALPCQHRYCYYCLRTR 194 (226)
Q Consensus 163 ~~~C~iC~~~~~~-p~~~~~CgH~fC~~Ci~~~ 194 (226)
-..|..|...+.. ++ ...=|..||..|....
T Consensus 31 CF~C~~C~~~L~~~~~-~~~~~~~yC~~cy~~~ 62 (70)
T 2d8z_A 31 CFVCTACRKQLSGQRF-TARDDFAYCLNCFCDL 62 (70)
T ss_dssp TSBCSSSCCBCTTSCC-EESSSSEECHHHHHHH
T ss_pred CCccCCCCCcCCcCce-EeeCCeEECHHHHHHH
Confidence 3556666555432 22 2334556666665443
No 186
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}
Probab=23.52 E-value=1.2e+02 Score=19.31 Aligned_cols=52 Identities=19% Similarity=0.474 Sum_probs=30.0
Q ss_pred cCcccccc--cCCCCC---------------CCCeec--CCCCcccHHHH-HHHHh---cCCCCCCCCCCccccc
Q 027227 161 EDVTTCPI--CQASPT---------------TPFLAL--PCQHRYCYYCL-RTRCA---ASPSFRCSRCNEPVIA 212 (226)
Q Consensus 161 ~~~~~C~i--C~~~~~---------------~p~~~~--~CgH~fC~~Ci-~~~~~---~~~~~~CP~Cr~~~~~ 212 (226)
.....|.+ |...+. .|+... .|+..|-..-. ..... ....+.|+.|+..+..
T Consensus 13 ~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~ 87 (100)
T 2ebt_A 13 RRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSR 87 (100)
T ss_dssp CCCEECCSSSCCCEESCHHHHHHHHHHHSCCCCEECCSSSCCCEESSHHHHHHHHHHHTSCCSCBCSSSCCBCSS
T ss_pred CcceEcCCCCCCCcccCHHHHHHHHHHhCCCCCeeCCCCCCCCccCCHHHHHHHHHHhCCCCCeECCCCcCccCC
Confidence 44577886 876543 443332 37777754332 22222 1235889999988764
No 187
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.44 E-value=56 Score=20.85 Aligned_cols=12 Identities=25% Similarity=0.509 Sum_probs=5.3
Q ss_pred CCcccHHHHHHH
Q 027227 183 QHRYCYYCLRTR 194 (226)
Q Consensus 183 gH~fC~~Ci~~~ 194 (226)
|..||..|..+.
T Consensus 63 ~~~~C~~c~~~~ 74 (81)
T 1x6a_A 63 ATLYCGKCHNEV 74 (81)
T ss_dssp SCEEEHHHHHHH
T ss_pred CEEECHHHHHHH
Confidence 344444444433
No 188
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=23.44 E-value=21 Score=21.95 Aligned_cols=40 Identities=15% Similarity=0.349 Sum_probs=23.8
Q ss_pred cCcccccccCCCCCCCCeecCCCCcccHHHHHHHHh---cCCCCCCCCCCccccc
Q 027227 161 EDVTTCPICQASPTTPFLALPCQHRYCYYCLRTRCA---ASPSFRCSRCNEPVIA 212 (226)
Q Consensus 161 ~~~~~C~iC~~~~~~p~~~~~CgH~fC~~Ci~~~~~---~~~~~~CP~Cr~~~~~ 212 (226)
+....|++|...+... .. +...+. ....+.|+.|+..+..
T Consensus 12 ~k~~~C~~C~k~f~~~-~~-----------L~~H~~~h~~~~~~~C~~C~~~f~~ 54 (72)
T 1x6e_A 12 EKPYGCVECGKAFSRS-SI-----------LVQHQRVHTGEKPYKCLECGKAFSQ 54 (72)
T ss_dssp CCCEECSSSCCEESSH-HH-----------HHHHHHGGGCSCCEECSSSCCEESS
T ss_pred CCCccCCCCCCccCCH-HH-----------HHHHHHhcCCCCCeECCCCCcccCC
Confidence 3457788887766654 11 122221 1235789999988765
No 189
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=23.37 E-value=35 Score=20.95 Aligned_cols=17 Identities=18% Similarity=0.511 Sum_probs=11.5
Q ss_pred CCCCCCCCCcccccccc
Q 027227 199 PSFRCSRCNEPVIAMQR 215 (226)
Q Consensus 199 ~~~~CP~Cr~~~~~~~~ 215 (226)
..+.||+|+.+-..+..
T Consensus 35 ~dw~CP~Cga~K~~F~~ 51 (55)
T 2v3b_B 35 ADWVCPDCGVGKIDFEM 51 (55)
T ss_dssp TTCCCTTTCCCGGGEEE
T ss_pred CCCcCCCCCCCHHHcee
Confidence 35789999886554443
No 190
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=23.34 E-value=20 Score=21.94 Aligned_cols=40 Identities=23% Similarity=0.412 Sum_probs=23.6
Q ss_pred cCcccccccCCCCCCCCeecCCCCcccHHHHHHHHhc---CCCCCCCCCCccccc
Q 027227 161 EDVTTCPICQASPTTPFLALPCQHRYCYYCLRTRCAA---SPSFRCSRCNEPVIA 212 (226)
Q Consensus 161 ~~~~~C~iC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~---~~~~~CP~Cr~~~~~ 212 (226)
+....|.+|...+... .. +...... ...+.|+.|+..+..
T Consensus 7 ~~~~~C~~C~k~f~~~-~~-----------L~~H~~~H~~~~~~~C~~C~~~f~~ 49 (70)
T 1x5w_A 7 GHPEKCSECSYSCSSK-AA-----------LRIHERIHCTDRPFKCNYCSFDTKQ 49 (70)
T ss_dssp CCSEECSSSSCEESSH-HH-----------HHHHHGGGCCSCSEECSSSSCEESS
T ss_pred CCCeECCCCCcccCCH-HH-----------HHHHHHHcCCCCCEeCCCCCCccCC
Confidence 3457788887766554 11 2222221 235789999988865
No 191
>1wfe_A Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=22.98 E-value=48 Score=22.35 Aligned_cols=28 Identities=14% Similarity=0.593 Sum_probs=21.9
Q ss_pred cCcccccc--cCCCCCCCCeecCCCCcccH
Q 027227 161 EDVTTCPI--CQASPTTPFLALPCQHRYCY 188 (226)
Q Consensus 161 ~~~~~C~i--C~~~~~~p~~~~~CgH~fC~ 188 (226)
.....|+. |.+.-..|+....|+..||.
T Consensus 23 ~~~~~C~~~~Ck~~~~l~f~C~~C~~~FC~ 52 (86)
T 1wfe_A 23 HKSYSCSFKGCTDVELVAVICPYCEKNFCL 52 (86)
T ss_dssp SCCEECCSTTCCCEESSCEECTTTCCEECG
T ss_pred CCCCCCCCcCCCCCCccceECCCCCccccc
Confidence 44578998 99776688666669999997
No 192
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=22.95 E-value=44 Score=21.59 Aligned_cols=18 Identities=28% Similarity=0.624 Sum_probs=12.9
Q ss_pred CCCCCCCCCccccccccc
Q 027227 199 PSFRCSRCNEPVIAMQRH 216 (226)
Q Consensus 199 ~~~~CP~Cr~~~~~~~~~ 216 (226)
..+.||+|+.+-..+...
T Consensus 39 ddw~CP~Cga~K~~F~~~ 56 (70)
T 1dx8_A 39 DSFMCPACRSPKNQFKSI 56 (70)
T ss_dssp TTCBCTTTCCBGGGEEEC
T ss_pred CCCcCCCCCCCHHHceEc
Confidence 357899999876555554
No 193
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.67 E-value=1.1e+02 Score=18.71 Aligned_cols=33 Identities=15% Similarity=0.364 Sum_probs=18.0
Q ss_pred cccccccCCCCCCCCeecCCCCcccHHHHHHHH
Q 027227 163 VTTCPICQASPTTPFLALPCQHRYCYYCLRTRC 195 (226)
Q Consensus 163 ~~~C~iC~~~~~~p~~~~~CgH~fC~~Ci~~~~ 195 (226)
-..|..|...+....-...=|..||..|.....
T Consensus 31 CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f 63 (69)
T 2cur_A 31 CFVCVTCSKKLAGQRFTAVEDQYYCVDCYKNFV 63 (69)
T ss_dssp TTBCTTTCCBCTTSCEEECSSCEEEHHHHHHHH
T ss_pred cCEECCCCCCCCCCccEeECCEEECHHHhHHHh
Confidence 356666666554321233446667777765554
No 194
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=22.23 E-value=40 Score=15.75 Aligned_cols=12 Identities=25% Similarity=0.725 Sum_probs=8.9
Q ss_pred CCCCCCCccccc
Q 027227 201 FRCSRCNEPVIA 212 (226)
Q Consensus 201 ~~CP~Cr~~~~~ 212 (226)
+.|+.|+..+..
T Consensus 3 ~~C~~C~~~f~~ 14 (29)
T 1ard_A 3 FVCEVCTRAFAR 14 (29)
T ss_dssp CBCTTTCCBCSS
T ss_pred eECCCCCcccCC
Confidence 578888877754
No 195
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.86 E-value=77 Score=19.59 Aligned_cols=10 Identities=20% Similarity=0.557 Sum_probs=4.5
Q ss_pred cccccCCCCC
Q 027227 165 TCPICQASPT 174 (226)
Q Consensus 165 ~C~iC~~~~~ 174 (226)
.|..|.+.+.
T Consensus 7 ~C~~C~~~I~ 16 (72)
T 1x4l_A 7 GCAGCTNPIS 16 (72)
T ss_dssp SBTTTTBCCC
T ss_pred CCcCCCcccc
Confidence 4444444443
No 196
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.86 E-value=78 Score=19.84 Aligned_cols=37 Identities=19% Similarity=0.684 Sum_probs=18.0
Q ss_pred ccccccCCCCC-CCCeecCCCCcccHHHHHHHHhcCCCCCCCCCCcccc
Q 027227 164 TTCPICQASPT-TPFLALPCQHRYCYYCLRTRCAASPSFRCSRCNEPVI 211 (226)
Q Consensus 164 ~~C~iC~~~~~-~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 211 (226)
..|..|.+.+. .. .+..-+..|...| +.|..|+.++.
T Consensus 10 ~~C~~C~~~I~~~~-~v~a~~~~~H~~C----------F~C~~C~~~L~ 47 (76)
T 2cu8_A 10 SKCPKCDKTVYFAE-KVSSLGKDWHKFC----------LKCERCSKTLT 47 (76)
T ss_dssp CBCTTTCCBCCTTT-EEEETTEEEETTT----------CBCSSSCCBCC
T ss_pred CCCcCCCCEeECCe-EEEECCeEeeCCC----------CCCCCCCCccC
Confidence 45666666555 22 2333344444333 34556655554
No 197
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=21.84 E-value=1.2e+02 Score=19.76 Aligned_cols=28 Identities=21% Similarity=0.509 Sum_probs=20.1
Q ss_pred cCcccccccCCCCCC-CCeecCCCCcccHH
Q 027227 161 EDVTTCPICQASPTT-PFLALPCQHRYCYY 189 (226)
Q Consensus 161 ~~~~~C~iC~~~~~~-p~~~~~CgH~fC~~ 189 (226)
.....|..|.+.... ++.. -||..||..
T Consensus 23 ~~~~RC~~C~kkvgL~~f~C-rCg~~FCs~ 51 (74)
T 1wfp_A 23 STATRCLSCNKKVGVTGFKC-RCGSTFCGT 51 (74)
T ss_dssp CCCCBCSSSCCBCTTTCEEC-TTSCEECTT
T ss_pred ccCccchhhcCcccccceEe-ccCCEeccc
Confidence 456799999865443 5544 799999983
No 198
>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.56 E-value=28 Score=20.92 Aligned_cols=16 Identities=25% Similarity=0.482 Sum_probs=11.1
Q ss_pred CCCCCCCCCccccccc
Q 027227 199 PSFRCSRCNEPVIAMQ 214 (226)
Q Consensus 199 ~~~~CP~Cr~~~~~~~ 214 (226)
....||.|+..+...+
T Consensus 11 ~~~~CPrCn~~f~~~~ 26 (49)
T 2e72_A 11 GRKICPRCNAQFRVTE 26 (49)
T ss_dssp SCCCCTTTCCCCSSHH
T ss_pred CceeCCcccccccchH
Confidence 3567888888776443
No 199
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=26.73 E-value=20 Score=16.68 Aligned_cols=12 Identities=25% Similarity=0.963 Sum_probs=7.9
Q ss_pred CCCCCCCccccc
Q 027227 201 FRCSRCNEPVIA 212 (226)
Q Consensus 201 ~~CP~Cr~~~~~ 212 (226)
..|+.|+..+..
T Consensus 3 ~~C~~C~k~f~~ 14 (26)
T 2lvu_A 3 YVCERCGKRFVQ 14 (26)
Confidence 457777776654
No 200
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=21.15 E-value=1.5e+02 Score=20.50 Aligned_cols=45 Identities=18% Similarity=0.532 Sum_probs=27.0
Q ss_pred CcccccccCCCC-------CCCC-eecCCCCcccHHHHHH------HHhcCCCCCCCCCC
Q 027227 162 DVTTCPICQASP-------TTPF-LALPCQHRYCYYCLRT------RCAASPSFRCSRCN 207 (226)
Q Consensus 162 ~~~~C~iC~~~~-------~~p~-~~~~CgH~fC~~Ci~~------~~~~~~~~~CP~Cr 207 (226)
....|.+|...- .... .-..|+..|...|+.. .+. ...+.||.|+
T Consensus 4 p~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~-~~~W~C~~C~ 62 (112)
T 3v43_A 4 PIPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTVRVK-ALRWQCIECK 62 (112)
T ss_dssp CCSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTCCHHHHHHHH-TSCCCCTTTC
T ss_pred cCccccccCCchhhCcCCCchhceEhhhcCCCCCCchhcCCHHHHHHhh-ccccccccCC
Confidence 456788887531 1121 2366888888899842 222 3467777774
No 201
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.05 E-value=1.8e+02 Score=18.86 Aligned_cols=33 Identities=15% Similarity=0.213 Sum_probs=17.2
Q ss_pred cccccccCCCCCCCCeecCCCCcccHHHHHHHH
Q 027227 163 VTTCPICQASPTTPFLALPCQHRYCYYCLRTRC 195 (226)
Q Consensus 163 ~~~C~iC~~~~~~p~~~~~CgH~fC~~Ci~~~~ 195 (226)
-..|..|...+..-.-...=|..||..|.....
T Consensus 42 CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f 74 (91)
T 2d8y_A 42 CFRCSYCNNKLSLGTYASLHGRIYCKPHFNQLF 74 (91)
T ss_dssp TCBCTTTCCBCCTTTCCCSSSCCCCHHHHHHHS
T ss_pred CCeeCCCCCCCCCCCcEeECCEEECHHHHHHHh
Confidence 356666665554320123345667777765544
No 202
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.89 E-value=68 Score=20.19 Aligned_cols=10 Identities=20% Similarity=0.614 Sum_probs=5.6
Q ss_pred cccccCCCCC
Q 027227 165 TCPICQASPT 174 (226)
Q Consensus 165 ~C~iC~~~~~ 174 (226)
.|+.|.+.+.
T Consensus 7 ~C~~C~~~I~ 16 (76)
T 1x68_A 7 GCVACSKPIS 16 (76)
T ss_dssp CCTTTCCCCC
T ss_pred CCccCCCccc
Confidence 4666655554
No 203
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=20.80 E-value=20 Score=25.25 Aligned_cols=46 Identities=15% Similarity=0.359 Sum_probs=24.6
Q ss_pred CCcCcccccccCCCCCCCCeec--CCCCcccHHHHHHHHhc--CCCCCCCCCC
Q 027227 159 SEEDVTTCPICQASPTTPFLAL--PCQHRYCYYCLRTRCAA--SPSFRCSRCN 207 (226)
Q Consensus 159 ~~~~~~~C~iC~~~~~~p~~~~--~CgH~fC~~Ci~~~~~~--~~~~~CP~Cr 207 (226)
...++..|.+|.+.-..- .-. .|-..|-..|+. +.. ++.+.||.|.
T Consensus 11 ~~~~~~~C~~C~~~G~ll-~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~ 60 (107)
T 4gne_A 11 KQMHEDYCFQCGDGGELV-MCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQ 60 (107)
T ss_dssp CCSSCSSCTTTCCCSEEE-ECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGB
T ss_pred cCCCCCCCCcCCCCCcEe-EECCCCCCcccccccCc--CCcCCCCCEECCCCC
Confidence 345667899998532111 112 344566666664 332 2456787554
No 204
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.61 E-value=32 Score=20.71 Aligned_cols=16 Identities=13% Similarity=0.287 Sum_probs=11.7
Q ss_pred cCcccccccCCCCCCC
Q 027227 161 EDVTTCPICQASPTTP 176 (226)
Q Consensus 161 ~~~~~C~iC~~~~~~p 176 (226)
+....|.+|...+...
T Consensus 16 ~~~~~C~~C~k~f~~~ 31 (73)
T 2ctu_A 16 DRSQKCSKCGIIFIRR 31 (73)
T ss_dssp CSEEECSSSCCEEECC
T ss_pred CCCeeCCcccchhCCH
Confidence 3457899998877655
No 205
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=20.38 E-value=45 Score=28.55 Aligned_cols=32 Identities=25% Similarity=0.498 Sum_probs=24.7
Q ss_pred cCcccccccCCCCC----CCCeecCCCCcccHHHHH
Q 027227 161 EDVTTCPICQASPT----TPFLALPCQHRYCYYCLR 192 (226)
Q Consensus 161 ~~~~~C~iC~~~~~----~p~~~~~CgH~fC~~Ci~ 192 (226)
.....|..|...+. .-+....||.++|..|..
T Consensus 355 ~~~t~C~~C~~~~~g~~~qg~~C~~C~~~~h~~C~~ 390 (406)
T 2vrw_B 355 EETTSCKACQMLLRGTFYQGYRCYRCRAPAHKECLG 390 (406)
T ss_dssp SSCCBCTTTCCBCCSSSSCEEEETTTCCEECGGGGG
T ss_pred CCCCCCccccchhceeCCCCCCCCCCcCccchhhhh
Confidence 45689999987653 445667899999999963
Done!