Query 027228
Match_columns 226
No_of_seqs 269 out of 1141
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 06:51:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027228.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027228hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03120 nucleic acid binding 100.0 1.2E-70 2.6E-75 486.4 19.8 211 1-226 1-214 (260)
2 PLN03121 nucleic acid binding 100.0 3.5E-70 7.7E-75 478.0 18.7 219 1-226 1-223 (243)
3 PLN03134 glycine-rich RNA-bind 99.6 4.1E-15 8.8E-20 121.8 11.4 78 4-81 34-115 (144)
4 PF00076 RRM_1: RNA recognitio 99.6 3.4E-15 7.4E-20 104.0 8.1 67 7-73 1-70 (70)
5 KOG0121 Nuclear cap-binding pr 99.6 3.4E-15 7.3E-20 120.9 7.1 79 4-82 36-118 (153)
6 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.5 4.8E-14 1E-18 127.4 10.4 76 4-79 269-348 (352)
7 PF14259 RRM_6: RNA recognitio 99.5 9.3E-14 2E-18 98.1 8.7 67 7-73 1-70 (70)
8 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.5 1.1E-13 2.3E-18 125.1 9.8 75 4-78 3-81 (352)
9 TIGR01659 sex-lethal sex-letha 99.4 4.2E-13 9E-18 124.2 9.7 75 4-78 107-185 (346)
10 smart00362 RRM_2 RNA recogniti 99.4 8.4E-13 1.8E-17 90.0 8.6 70 6-75 1-72 (72)
11 KOG0107 Alternative splicing f 99.4 8.4E-13 1.8E-17 111.6 7.9 74 4-79 10-84 (195)
12 TIGR01622 SF-CC1 splicing fact 99.4 1.3E-12 2.9E-17 122.4 10.1 75 4-78 89-166 (457)
13 PLN03213 repressor of silencin 99.4 1.3E-12 2.8E-17 124.7 9.1 76 4-80 10-88 (759)
14 TIGR01645 half-pint poly-U bin 99.4 2.6E-12 5.6E-17 126.4 9.7 77 4-80 107-187 (612)
15 cd00590 RRM RRM (RNA recogniti 99.4 7.3E-12 1.6E-16 85.7 9.1 70 6-75 1-73 (74)
16 TIGR01628 PABP-1234 polyadenyl 99.3 5.4E-12 1.2E-16 121.9 9.8 72 6-77 2-77 (562)
17 smart00360 RRM RNA recognition 99.3 8.2E-12 1.8E-16 84.6 7.7 67 9-75 1-71 (71)
18 TIGR01659 sex-lethal sex-letha 99.3 8E-12 1.7E-16 115.7 9.8 77 4-80 193-275 (346)
19 COG0724 RNA-binding proteins ( 99.3 1E-11 2.2E-16 102.9 9.5 74 5-78 116-193 (306)
20 KOG0125 Ataxin 2-binding prote 99.3 4.1E-12 8.8E-17 116.0 7.4 76 4-79 96-173 (376)
21 TIGR01622 SF-CC1 splicing fact 99.3 1.4E-11 3.1E-16 115.4 10.6 79 4-82 186-268 (457)
22 TIGR01645 half-pint poly-U bin 99.3 1.1E-11 2.3E-16 122.1 9.8 75 5-79 205-283 (612)
23 TIGR01648 hnRNP-R-Q heterogene 99.3 1.7E-11 3.8E-16 120.1 9.9 74 1-79 230-306 (578)
24 TIGR01628 PABP-1234 polyadenyl 99.3 2E-11 4.3E-16 118.0 10.1 75 4-78 285-362 (562)
25 TIGR01642 U2AF_lg U2 snRNP aux 99.3 2.6E-11 5.6E-16 115.0 10.1 76 4-79 295-374 (509)
26 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.2 3.5E-11 7.6E-16 115.1 9.6 73 4-79 2-77 (481)
27 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.2 4.2E-11 9.2E-16 114.5 10.0 73 4-78 275-349 (481)
28 KOG0105 Alternative splicing f 99.2 2.4E-11 5.2E-16 104.0 7.0 78 4-81 6-84 (241)
29 TIGR01642 U2AF_lg U2 snRNP aux 99.2 5.1E-11 1.1E-15 113.0 8.7 76 4-82 175-262 (509)
30 KOG0148 Apoptosis-promoting RN 99.2 9.1E-11 2E-15 105.1 8.6 72 3-77 163-235 (321)
31 TIGR01648 hnRNP-R-Q heterogene 99.1 1.1E-10 2.4E-15 114.5 8.7 74 4-77 58-135 (578)
32 KOG0122 Translation initiation 99.1 2.6E-10 5.5E-15 100.8 9.3 76 3-78 188-267 (270)
33 KOG0149 Predicted RNA-binding 99.1 1.1E-10 2.4E-15 102.5 6.9 73 5-77 13-88 (247)
34 KOG0114 Predicted RNA-binding 99.1 3E-10 6.4E-15 89.4 8.0 75 4-78 18-93 (124)
35 PF13893 RRM_5: RNA recognitio 99.1 3.7E-10 8.1E-15 77.2 7.4 54 21-76 1-55 (56)
36 KOG4207 Predicted splicing fac 99.1 1.2E-10 2.5E-15 101.2 5.9 75 4-78 13-91 (256)
37 KOG0113 U1 small nuclear ribon 99.1 4.3E-10 9.4E-15 101.7 8.5 73 4-76 101-177 (335)
38 KOG0108 mRNA cleavage and poly 99.1 4.3E-10 9.3E-15 107.0 8.1 77 5-81 19-99 (435)
39 KOG0117 Heterogeneous nuclear 99.0 5E-10 1.1E-14 105.7 7.0 75 1-80 256-331 (506)
40 KOG0131 Splicing factor 3b, su 99.0 4.3E-10 9.3E-15 95.8 6.0 78 3-80 8-89 (203)
41 smart00361 RRM_1 RNA recogniti 99.0 2.3E-09 5E-14 76.9 7.4 58 18-75 2-70 (70)
42 KOG0126 Predicted RNA-binding 99.0 2.6E-10 5.6E-15 97.3 2.1 82 3-84 34-119 (219)
43 KOG0123 Polyadenylate-binding 98.9 3.3E-09 7.1E-14 99.2 8.0 77 4-81 76-154 (369)
44 KOG0130 RNA-binding protein RB 98.9 1.8E-09 4E-14 88.5 5.4 76 5-80 73-152 (170)
45 KOG0127 Nucleolar protein fibr 98.9 2.3E-09 5E-14 103.5 6.6 81 1-81 1-86 (678)
46 KOG0111 Cyclophilin-type pepti 98.9 1.8E-09 3.9E-14 94.8 4.8 76 4-79 10-89 (298)
47 KOG4212 RNA-binding protein hn 98.9 5.4E-09 1.2E-13 98.9 7.8 76 4-79 44-123 (608)
48 KOG0117 Heterogeneous nuclear 98.9 6E-09 1.3E-13 98.6 8.1 74 4-77 83-161 (506)
49 KOG0124 Polypyrimidine tract-b 98.9 2.3E-09 4.9E-14 99.7 5.1 78 5-82 114-195 (544)
50 KOG4211 Splicing factor hnRNP- 98.8 7.8E-09 1.7E-13 98.6 8.1 77 2-79 8-85 (510)
51 KOG0127 Nucleolar protein fibr 98.8 8.3E-09 1.8E-13 99.7 7.5 73 6-78 119-194 (678)
52 KOG4209 Splicing factor RNPS1, 98.8 6.2E-09 1.3E-13 91.8 6.1 78 2-79 99-179 (231)
53 KOG0145 RNA-binding protein EL 98.8 2.9E-08 6.3E-13 89.1 8.8 74 4-77 278-355 (360)
54 KOG4676 Splicing factor, argin 98.7 1.3E-08 2.8E-13 95.2 5.2 79 4-82 7-91 (479)
55 KOG0145 RNA-binding protein EL 98.7 4.5E-08 9.8E-13 87.8 7.7 77 5-81 42-122 (360)
56 KOG4212 RNA-binding protein hn 98.6 6.1E-08 1.3E-12 91.9 6.1 71 4-76 536-607 (608)
57 KOG0109 RNA-binding protein LA 98.6 5.9E-08 1.3E-12 88.0 5.8 71 5-80 3-74 (346)
58 KOG0415 Predicted peptidyl pro 98.6 7.2E-08 1.6E-12 89.5 6.1 73 4-76 239-315 (479)
59 KOG0153 Predicted RNA-binding 98.6 1.2E-07 2.5E-12 87.6 7.3 73 4-79 228-302 (377)
60 KOG0123 Polyadenylate-binding 98.6 1.6E-07 3.5E-12 87.9 7.9 71 5-78 2-73 (369)
61 KOG0116 RasGAP SH3 binding pro 98.5 1.8E-07 4E-12 88.8 7.4 76 4-79 288-366 (419)
62 KOG0147 Transcriptional coacti 98.5 1.2E-07 2.6E-12 91.5 5.8 76 7-82 281-360 (549)
63 KOG4206 Spliceosomal protein s 98.5 2.7E-07 5.9E-12 80.7 7.3 76 4-79 9-89 (221)
64 KOG0110 RNA-binding protein (R 98.5 2.2E-07 4.7E-12 92.0 7.4 72 7-78 518-596 (725)
65 KOG0148 Apoptosis-promoting RN 98.5 2.3E-07 5E-12 83.5 6.6 74 6-79 64-141 (321)
66 KOG0144 RNA-binding protein CU 98.5 1.3E-07 2.8E-12 89.4 5.2 79 4-82 124-208 (510)
67 KOG4205 RNA-binding protein mu 98.5 1.3E-07 2.8E-12 86.8 4.7 80 3-82 5-87 (311)
68 KOG1548 Transcription elongati 98.5 4.8E-07 1E-11 83.6 7.6 75 4-78 134-219 (382)
69 KOG0132 RNA polymerase II C-te 98.4 5.2E-07 1.1E-11 90.2 7.3 75 4-81 421-496 (894)
70 KOG4454 RNA binding protein (R 98.4 7.6E-08 1.7E-12 84.4 1.2 76 3-78 8-85 (267)
71 KOG4205 RNA-binding protein mu 98.4 4.3E-07 9.3E-12 83.4 5.7 79 4-82 97-178 (311)
72 KOG0109 RNA-binding protein LA 98.4 4.3E-07 9.2E-12 82.5 4.6 68 4-76 78-146 (346)
73 KOG0144 RNA-binding protein CU 98.3 9.9E-07 2.1E-11 83.6 6.8 75 5-79 35-116 (510)
74 KOG0533 RRM motif-containing p 98.2 2.9E-06 6.3E-11 75.5 7.4 75 5-79 84-161 (243)
75 KOG0131 Splicing factor 3b, su 98.2 1.3E-06 2.8E-11 74.8 4.9 74 4-77 96-174 (203)
76 KOG0147 Transcriptional coacti 98.2 3.9E-07 8.4E-12 88.1 1.5 74 4-77 179-255 (549)
77 KOG0106 Alternative splicing f 98.2 1E-06 2.3E-11 77.1 4.0 70 5-79 2-72 (216)
78 KOG4661 Hsp27-ERE-TATA-binding 98.1 5.1E-06 1.1E-10 81.2 6.7 78 4-81 405-486 (940)
79 KOG0110 RNA-binding protein (R 98.1 2.8E-06 6E-11 84.3 4.6 76 5-80 614-693 (725)
80 KOG0124 Polypyrimidine tract-b 98.1 7.4E-06 1.6E-10 76.7 6.5 73 5-77 211-287 (544)
81 KOG4660 Protein Mei2, essentia 98.0 2.9E-06 6.2E-11 82.3 3.4 68 4-73 75-143 (549)
82 KOG4208 Nucleolar RNA-binding 98.0 1.2E-05 2.5E-10 69.9 6.8 72 6-77 51-127 (214)
83 PF08777 RRM_3: RNA binding mo 98.0 1.9E-05 4E-10 61.7 5.9 57 5-64 2-59 (105)
84 KOG1457 RNA binding protein (c 97.9 4.3E-05 9.4E-10 67.6 8.2 75 4-78 34-116 (284)
85 PF14605 Nup35_RRM_2: Nup53/35 97.9 2.5E-05 5.3E-10 53.9 5.3 52 5-60 2-53 (53)
86 KOG4211 Splicing factor hnRNP- 97.9 2.6E-05 5.6E-10 74.9 6.5 73 5-77 104-179 (510)
87 KOG0146 RNA-binding protein ET 97.8 3.2E-05 7E-10 70.0 4.7 77 3-79 284-364 (371)
88 KOG1995 Conserved Zn-finger pr 97.8 2.1E-05 4.6E-10 72.9 3.7 77 4-80 66-154 (351)
89 PF05172 Nup35_RRM: Nup53/35/4 97.7 0.0002 4.3E-09 55.8 8.2 73 4-77 6-89 (100)
90 KOG0146 RNA-binding protein ET 97.7 4.5E-05 9.7E-10 69.1 4.4 75 4-78 19-99 (371)
91 PF11608 Limkain-b1: Limkain b 97.5 0.00054 1.2E-08 52.2 7.3 68 5-79 3-76 (90)
92 KOG4210 Nuclear localization s 97.4 8.6E-05 1.9E-09 67.5 2.9 77 5-81 185-265 (285)
93 KOG0106 Alternative splicing f 97.4 0.00014 2.9E-09 63.9 3.1 66 5-75 100-166 (216)
94 KOG1457 RNA binding protein (c 97.3 0.00024 5.2E-09 62.9 3.7 62 5-67 211-273 (284)
95 COG5175 MOT2 Transcriptional r 97.2 0.00079 1.7E-08 62.8 6.1 71 5-75 115-198 (480)
96 PF04059 RRM_2: RNA recognitio 97.1 0.0039 8.4E-08 48.3 8.6 64 5-68 2-71 (97)
97 KOG3152 TBP-binding protein, a 97.1 0.00023 5E-09 63.8 1.6 66 6-71 76-157 (278)
98 PF08952 DUF1866: Domain of un 97.1 0.0026 5.7E-08 52.7 7.5 69 5-78 28-105 (146)
99 KOG0151 Predicted splicing reg 97.0 0.0013 2.7E-08 66.1 6.2 74 4-77 174-254 (877)
100 KOG1190 Polypyrimidine tract-b 97.0 0.0034 7.3E-08 59.8 8.5 72 5-78 298-371 (492)
101 KOG1855 Predicted RNA-binding 96.9 0.00079 1.7E-08 64.2 3.2 65 4-68 231-311 (484)
102 KOG4307 RNA binding protein RB 96.9 0.0031 6.7E-08 63.4 7.4 71 5-75 868-942 (944)
103 KOG0120 Splicing factor U2AF, 96.8 0.0011 2.5E-08 64.4 4.0 76 4-79 289-368 (500)
104 KOG4206 Spliceosomal protein s 96.6 0.0082 1.8E-07 52.9 7.3 72 4-77 146-219 (221)
105 KOG0129 Predicted RNA-binding 96.4 0.0077 1.7E-07 58.5 6.8 56 4-60 259-323 (520)
106 KOG1548 Transcription elongati 96.3 0.025 5.4E-07 52.9 9.0 77 3-80 264-352 (382)
107 KOG1365 RNA-binding protein Fu 96.1 0.0064 1.4E-07 57.6 4.4 70 6-75 163-238 (508)
108 KOG0129 Predicted RNA-binding 96.1 0.013 2.7E-07 57.1 6.4 74 4-78 370-452 (520)
109 PLN03120 nucleic acid binding 95.9 0.0045 9.7E-08 55.8 2.3 62 133-194 135-208 (260)
110 KOG1190 Polypyrimidine tract-b 95.9 0.017 3.7E-07 55.1 6.2 71 4-76 414-487 (492)
111 KOG1365 RNA-binding protein Fu 95.9 0.01 2.2E-07 56.3 4.3 75 5-79 281-361 (508)
112 KOG0128 RNA-binding protein SA 95.5 0.0015 3.2E-08 66.6 -2.8 71 5-75 668-742 (881)
113 KOG0120 Splicing factor U2AF, 95.2 0.053 1.2E-06 53.0 6.9 59 20-78 425-490 (500)
114 PF10309 DUF2414: Protein of u 95.2 0.09 2E-06 37.7 6.3 52 5-61 6-60 (62)
115 KOG0226 RNA-binding proteins [ 95.1 0.026 5.7E-07 50.9 4.2 73 4-76 190-266 (290)
116 KOG1456 Heterogeneous nuclear 95.1 0.1 2.2E-06 49.5 8.1 73 4-78 287-361 (494)
117 KOG1996 mRNA splicing factor [ 95.0 0.054 1.2E-06 49.9 6.0 60 18-77 300-364 (378)
118 KOG2314 Translation initiation 95.0 0.042 9.2E-07 54.3 5.5 75 5-79 59-143 (698)
119 PLN03121 nucleic acid binding 95.0 0.017 3.7E-07 51.6 2.5 50 131-180 146-198 (243)
120 KOG4307 RNA binding protein RB 94.9 0.045 9.8E-07 55.3 5.6 69 6-77 4-74 (944)
121 KOG0105 Alternative splicing f 94.8 0.079 1.7E-06 46.1 6.2 60 5-68 116-176 (241)
122 KOG2202 U2 snRNP splicing fact 94.4 0.022 4.7E-07 51.2 1.8 63 19-81 83-149 (260)
123 KOG4285 Mitotic phosphoprotein 93.5 0.25 5.4E-06 45.7 6.9 70 6-79 199-269 (350)
124 PF03467 Smg4_UPF3: Smg-4/UPF3 93.5 0.15 3.2E-06 43.3 5.1 67 4-70 7-83 (176)
125 KOG0115 RNA-binding protein p5 92.7 0.14 2.9E-06 46.3 3.9 77 5-81 32-115 (275)
126 KOG0112 Large RNA-binding prot 92.7 0.024 5.3E-07 58.3 -0.9 71 4-74 372-445 (975)
127 KOG4849 mRNA cleavage factor I 92.7 0.13 2.9E-06 48.5 3.9 73 5-77 81-159 (498)
128 PF15023 DUF4523: Protein of u 92.6 0.46 1E-05 39.8 6.6 66 5-74 87-156 (166)
129 PF08675 RNA_bind: RNA binding 92.3 0.86 1.9E-05 34.8 7.3 50 6-61 11-60 (87)
130 PF07576 BRAP2: BRCA1-associat 92.0 1.1 2.4E-05 35.3 8.0 64 6-69 14-81 (110)
131 KOG1456 Heterogeneous nuclear 90.9 1.1 2.4E-05 42.8 7.9 69 8-78 126-197 (494)
132 KOG0128 RNA-binding protein SA 90.9 0.12 2.5E-06 53.2 1.6 72 5-76 737-811 (881)
133 KOG2253 U1 snRNP complex, subu 90.1 0.14 3.1E-06 51.3 1.4 68 4-77 40-108 (668)
134 KOG2068 MOT2 transcription fac 89.8 0.14 2.9E-06 47.7 1.0 72 6-77 79-160 (327)
135 KOG0804 Cytoplasmic Zn-finger 87.7 1.5 3.3E-05 42.6 6.4 67 4-70 74-143 (493)
136 PF04847 Calcipressin: Calcipr 87.6 1.7 3.8E-05 37.2 6.2 58 17-77 8-68 (184)
137 KOG2135 Proteins containing th 85.2 0.45 9.8E-06 46.3 1.5 69 7-78 375-444 (526)
138 KOG4676 Splicing factor, argin 84.3 0.3 6.6E-06 46.6 -0.0 72 4-75 52-125 (479)
139 PF03880 DbpA: DbpA RNA bindin 84.3 1.1 2.4E-05 32.4 2.9 58 14-77 11-74 (74)
140 PF03468 XS: XS domain; Inter 83.8 2.2 4.8E-05 33.9 4.7 59 6-64 10-78 (116)
141 KOG2416 Acinus (induces apopto 81.3 1.1 2.3E-05 45.0 2.4 71 4-77 444-519 (718)
142 KOG2591 c-Mpl binding protein, 79.3 5.4 0.00012 39.9 6.5 66 5-74 176-246 (684)
143 KOG0112 Large RNA-binding prot 78.9 2.4 5.2E-05 44.3 4.1 74 4-80 455-531 (975)
144 PF01296 Galanin: Galanin; In 78.2 0.33 7.2E-06 29.5 -1.3 25 129-153 5-29 (29)
145 KOG2193 IGF-II mRNA-binding pr 75.3 2.6 5.6E-05 41.0 3.0 65 6-76 3-72 (584)
146 PF15513 DUF4651: Domain of un 74.5 4.9 0.00011 28.8 3.6 19 19-37 9-27 (62)
147 KOG4210 Nuclear localization s 74.3 1.5 3.3E-05 39.9 1.2 72 4-75 88-163 (285)
148 KOG4008 rRNA processing protei 74.2 3.4 7.4E-05 37.1 3.3 61 4-64 40-119 (261)
149 PRK14548 50S ribosomal protein 72.6 10 0.00023 28.6 5.2 53 6-58 22-76 (84)
150 TIGR03636 L23_arch archaeal ri 64.6 19 0.0004 26.8 5.0 55 6-60 15-72 (77)
151 smart00071 Galanin Galanin. Ga 42.3 4.5 9.8E-05 31.3 -1.5 28 128-155 16-43 (103)
152 PTZ00191 60S ribosomal protein 40.4 89 0.0019 26.0 5.8 55 6-60 83-140 (145)
153 PF09707 Cas_Cas2CT1978: CRISP 38.7 70 0.0015 24.2 4.5 48 5-52 26-73 (86)
154 PF07292 NID: Nmi/IFP 35 domai 37.7 23 0.0005 27.0 1.8 23 4-26 52-74 (88)
155 KOG4574 RNA-binding protein (c 37.7 23 0.0005 37.2 2.3 65 10-77 304-371 (1007)
156 PRK05738 rplW 50S ribosomal pr 36.5 91 0.002 23.6 4.9 50 5-54 20-84 (92)
157 COG0724 RNA-binding proteins ( 35.1 78 0.0017 25.6 4.7 47 4-50 225-271 (306)
158 KOG2891 Surface glycoprotein [ 34.9 11 0.00024 35.0 -0.4 63 5-67 150-247 (445)
159 PF11767 SET_assoc: Histone ly 33.4 72 0.0016 22.9 3.7 54 15-74 11-65 (66)
160 PF02714 DUF221: Domain of unk 31.0 54 0.0012 29.4 3.4 35 46-81 1-35 (325)
161 KOG3430 Dynein light chain typ 30.8 69 0.0015 24.7 3.4 35 136-170 18-54 (90)
162 PF10567 Nab6_mRNP_bdg: RNA-re 30.2 63 0.0014 30.1 3.6 52 4-55 15-76 (309)
163 COG0351 ThiD Hydroxymethylpyri 28.3 55 0.0012 29.8 2.9 23 123-146 216-238 (263)
164 PF11848 DUF3368: Domain of un 28.1 87 0.0019 20.7 3.2 25 121-145 21-45 (48)
165 cd04908 ACT_Bt0572_1 N-termina 27.5 2E+02 0.0043 19.4 6.6 47 19-66 16-63 (66)
166 PRK12280 rplW 50S ribosomal pr 27.2 1.3E+02 0.0028 25.4 4.8 36 5-40 22-59 (158)
167 PF14111 DUF4283: Domain of un 26.7 57 0.0012 25.6 2.5 42 7-48 107-150 (153)
168 PF14160 FAM110_C: Centrosome- 25.6 38 0.00083 27.0 1.2 15 16-30 18-32 (111)
169 PF14893 PNMA: PNMA 25.3 60 0.0013 30.4 2.7 49 4-52 18-71 (331)
170 CHL00030 rpl23 ribosomal prote 25.1 1.2E+02 0.0025 23.3 3.8 50 6-55 20-84 (93)
171 COG5353 Uncharacterized protei 25.0 2.4E+02 0.0051 23.9 5.8 50 5-54 88-153 (161)
172 PF08543 Phos_pyr_kin: Phospho 24.3 74 0.0016 27.7 2.9 23 123-146 205-227 (246)
173 KOG2193 IGF-II mRNA-binding pr 24.2 4.2 9.1E-05 39.5 -5.2 76 4-79 80-156 (584)
174 PF00276 Ribosomal_L23: Riboso 24.1 2.7E+02 0.0058 20.9 5.6 52 6-57 21-87 (91)
175 cd04889 ACT_PDH-BS-like C-term 23.8 2.1E+02 0.0046 18.4 5.7 42 19-60 13-55 (56)
176 PF03013 Pyr_excise: Pyrimidin 23.1 50 0.0011 26.8 1.5 19 122-140 66-84 (130)
177 PF13310 Virulence_RhuM: Virul 23.1 41 0.00089 30.6 1.1 28 117-144 45-72 (260)
178 PTZ00493 phosphomethylpyrimidi 22.8 77 0.0017 29.5 2.9 23 123-146 256-278 (321)
179 PRK10163 DNA-binding transcrip 22.5 1.7E+02 0.0036 26.0 4.9 53 120-172 56-118 (271)
180 CHL00128 psbW photosystem II p 22.4 1.1E+02 0.0023 24.5 3.2 28 31-58 15-43 (113)
181 TIGR03047 PS_II_psb28 photosys 22.0 1.1E+02 0.0023 24.4 3.1 28 31-58 12-40 (109)
182 KOG4410 5-formyltetrahydrofola 21.9 1.1E+02 0.0023 28.8 3.5 49 5-56 331-380 (396)
183 PF11411 DNA_ligase_IV: DNA li 21.2 57 0.0012 21.0 1.2 17 14-30 19-35 (36)
184 PRK11558 putative ssRNA endonu 20.7 1.7E+02 0.0037 22.7 3.9 48 5-53 28-76 (97)
No 1
>PLN03120 nucleic acid binding protein; Provisional
Probab=100.00 E-value=1.2e-70 Score=486.35 Aligned_cols=211 Identities=55% Similarity=0.782 Sum_probs=192.8
Q ss_pred CCCccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCCCCcEEEEEEcChHHHHHHHhhcCCeecceEEEEeeCCCC
Q 027228 1 MQQTRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIALLLSGATIVDQIVSITPAENY 80 (226)
Q Consensus 1 Ms~~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~~~~~~A~V~F~~~~aa~tAl~Lng~~l~gr~I~V~~a~~~ 80 (226)
|++.++|||+|||+.+||++|++||++||+|++|+|++++++++||||+|++++++++||+|||++|+||.|+|+++.+|
T Consensus 1 ~~~~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~AllLnG~~l~gr~V~Vt~a~~~ 80 (260)
T PLN03120 1 VMQVRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALLLSGATIVDQSVTITPAEDY 80 (260)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHHhcCCeeCCceEEEEeccCC
Confidence 45679999999999999999999999999999999999987789999999999999999999999999999999999999
Q ss_pred CCCCCccchhhccccccCCCCCCCCCCCCCCCCccchhhhHHHHHHHHhhccccccHHHHHHHHHhhhhcCccHHHHHHH
Q 027228 81 VPKPESQEVTVVVNAVSEAPSGNNEGKTSPSSSGRMYVNRAQEVVTSVLARGSAIRQEAVNKAKAFDEKHQFTANASAKV 160 (226)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~qe~k~~~~~~~~~a~~vva~~LA~Gyvl~d~ai~kA~~fDekh~iss~~~~~v 160 (226)
..+++.. +..+. ....+.++.++++||+||++||||||+||||||+|||+||||||||++|+++|
T Consensus 81 ~~p~~~~---------~~~~~------~~~~~~~~~~~~~a~~vva~mLAkGy~l~~dA~~kAk~fDekH~~ss~a~a~v 145 (260)
T PLN03120 81 QLPPEAL---------APLSS------NSPASGAESAVKKAEDVVSSMLAKGFILGKDAVNKAKAFDEKHQLTSTASAKV 145 (260)
T ss_pred CCCcccc---------ccccc------ccCCCCccchhhHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhchHHHHHHHH
Confidence 8754321 00000 11233345689999999999999999999999999999999999999999999
Q ss_pred hhhhhccCcccccccchhhHhHhhhhccccccccHhHHHHHHHHHHhhhhhccchhcCcc---cccccC
Q 027228 161 ISFDRRVGFTEKLTVGISVVNEKVKSVDQRLHVSDKTMAAIFAAERKINDTGSAVKTSRY---GVFFLN 226 (226)
Q Consensus 161 ~~lD~k~g~t~k~~~g~~~v~~k~k~vD~~~~vs~kt~sa~~~~~~~~~~~~sa~~~~~y---ga~~~~ 226 (226)
++||+||||||||++|+++||+|+|+||||||||+||+||+.+|||++++||||||+||| ||+||+
T Consensus 146 ~~~d~k~gltek~~~g~~~v~~~~k~vDeky~vs~kt~sa~~~~~~~~~~a~sai~~~~y~~~ga~w~~ 214 (260)
T PLN03120 146 ASLDKKIGLSEKLSAGTAVVNEKVKEVDQKYQVSEKTKSALAAAEQKVSSAGSAIMKNRYVLTGASWVT 214 (260)
T ss_pred HhhhhhcCcccccccchHHHHHHHHhhhhhhchhHHHHHHHHHHHHHHHHHHHHHhcCcccccchHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999 999985
No 2
>PLN03121 nucleic acid binding protein; Provisional
Probab=100.00 E-value=3.5e-70 Score=477.98 Aligned_cols=219 Identities=42% Similarity=0.534 Sum_probs=194.8
Q ss_pred CC-CccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCCCCcEEEEEEcChHHHHHHHhhcCCeecceEEEEeeCCC
Q 027228 1 MQ-QTRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIALLLSGATIVDQIVSITPAEN 79 (226)
Q Consensus 1 Ms-~~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~~~~~~A~V~F~~~~aa~tAl~Lng~~l~gr~I~V~~a~~ 79 (226)
|+ .++||+|+||++.+||++|++||++||+|.+|+|+++++..+||||+|++++++++|++|||++|.|++|+|+++++
T Consensus 1 m~~~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAllLnGa~l~d~~I~It~~~~ 80 (243)
T PLN03121 1 MYPGGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAVLLSGATIVDQRVCITRWGQ 80 (243)
T ss_pred CCCCceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHHhcCCCeeCCceEEEEeCcc
Confidence 54 47899999999999999999999999999999999998888999999999999999999999999999999999999
Q ss_pred CCCCCCccchhhccccccCCCCCCCCCCCCCCCCccchhhhHHHHHHHHhhccccccHHHHHHHHHhhhhcCccHHHHHH
Q 027228 80 YVPKPESQEVTVVVNAVSEAPSGNNEGKTSPSSSGRMYVNRAQEVVTSVLARGSAIRQEAVNKAKAFDEKHQFTANASAK 159 (226)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~qe~k~~~~~~~~~a~~vva~~LA~Gyvl~d~ai~kA~~fDekh~iss~~~~~ 159 (226)
|..+++.|........ . ........+.+.|.|+.++++||+||++||||||+||+|||+|||+|||+||||++++++
T Consensus 81 y~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~p~~a~~~aq~Vv~tmLAkGyvLgkda~~KAkafDE~h~lss~a~a~ 157 (243)
T PLN03121 81 YEDEFDFWNRPSWDTE-D--ISTHNYETNQFASTPGEAVTVAQEVVKTMLAKGYVLGKDALSKAKAFDESHQVSATAAAK 157 (243)
T ss_pred cccCcccccCcccccc-c--cccccccccccCCCchhhHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCccHhhhhh
Confidence 9987765421110000 0 000011134555677789999999999999999999999999999999999999999999
Q ss_pred HhhhhhccCcccccccchhhHhHhhhhccccccccHhHHHHHHHHHHhhhhhccchhcCcc---cccccC
Q 027228 160 VISFDRRVGFTEKLTVGISVVNEKVKSVDQRLHVSDKTMAAIFAAERKINDTGSAVKTSRY---GVFFLN 226 (226)
Q Consensus 160 v~~lD~k~g~t~k~~~g~~~v~~k~k~vD~~~~vs~kt~sa~~~~~~~~~~~~sa~~~~~y---ga~~~~ 226 (226)
|.+||+|+||||||++|+ +++|+|||||||||+||||+.+|||++++||||||+||| ||+||+
T Consensus 158 v~~~d~~iglt~k~~~g~----~~vk~vDeky~vs~~tksA~~aa~~~~~~a~sai~~~~Y~~~Ga~w~s 223 (243)
T PLN03121 158 VAELSKRIGLTDKIFAGM----EAVRSVDEKYHVSEFTKSAATATGRTAAAAANAVVNSSYFSKGALWVS 223 (243)
T ss_pred hhhhhhhccchhhhhhhH----HHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhhcchhhcchHHHH
Confidence 999999999999999999 889999999999999999999999999999999999999 999996
No 3
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.62 E-value=4.1e-15 Score=121.79 Aligned_cols=78 Identities=17% Similarity=0.317 Sum_probs=71.3
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCC---CCcEEEEEEcChHHHHHHH-hhcCCeecceEEEEeeCCC
Q 027228 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYG---QSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPAEN 79 (226)
Q Consensus 4 ~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~~---~~~~A~V~F~~~~aa~tAl-~Lng~~l~gr~I~V~~a~~ 79 (226)
.++|||+|||+.+||++|+++|+.||+|.++.|+.+.. ..+||||+|+++++|+.|| .|||..|+|+.|+|..+..
T Consensus 34 ~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a~~ 113 (144)
T PLN03134 34 STKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPAND 113 (144)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeCCc
Confidence 57899999999999999999999999999999998863 4689999999999999999 5999999999999998765
Q ss_pred CC
Q 027228 80 YV 81 (226)
Q Consensus 80 ~~ 81 (226)
-.
T Consensus 114 ~~ 115 (144)
T PLN03134 114 RP 115 (144)
T ss_pred CC
Confidence 43
No 4
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.60 E-value=3.4e-15 Score=103.99 Aligned_cols=67 Identities=33% Similarity=0.474 Sum_probs=62.4
Q ss_pred EEEeCCCCcccHHHHHHHcccCCceeEEEEEecC--CCCcEEEEEEcChHHHHHHHh-hcCCeecceEEE
Q 027228 7 VQVKNVSDLAHEREIHEFFSFSGDIERIEILREY--GQSKTAFVTFKDAKALEIALL-LSGATIVDQIVS 73 (226)
Q Consensus 7 V~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~--~~~~~A~V~F~~~~aa~tAl~-Lng~~l~gr~I~ 73 (226)
|||+|||+.+|+++|+++|+.+|+|.++.+..+. ...++|||+|+++++++.|+. |||..++|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 7999999999999999999999999999999963 346899999999999999996 999999999985
No 5
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.58 E-value=3.4e-15 Score=120.85 Aligned_cols=79 Identities=32% Similarity=0.351 Sum_probs=73.2
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCC---CCcEEEEEEcChHHHHHHH-hhcCCeecceEEEEeeCCC
Q 027228 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYG---QSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPAEN 79 (226)
Q Consensus 4 ~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~~---~~~~A~V~F~~~~aa~tAl-~Lng~~l~gr~I~V~~a~~ 79 (226)
+.||||+|||..++|++|.++|+.||+|..|.|--|.. +.|||||+|-..++|+.|| .+||+.|++++|.|.....
T Consensus 36 S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D~G 115 (153)
T KOG0121|consen 36 SCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWDAG 115 (153)
T ss_pred cceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecccc
Confidence 57999999999999999999999999999999987763 4789999999999999999 5999999999999998877
Q ss_pred CCC
Q 027228 80 YVP 82 (226)
Q Consensus 80 ~~~ 82 (226)
+.+
T Consensus 116 F~e 118 (153)
T KOG0121|consen 116 FVE 118 (153)
T ss_pred chh
Confidence 765
No 6
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.53 E-value=4.8e-14 Score=127.37 Aligned_cols=76 Identities=20% Similarity=0.340 Sum_probs=69.7
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecC---CCCcEEEEEEcChHHHHHHH-hhcCCeecceEEEEeeCCC
Q 027228 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREY---GQSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPAEN 79 (226)
Q Consensus 4 ~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~---~~~~~A~V~F~~~~aa~tAl-~Lng~~l~gr~I~V~~a~~ 79 (226)
+++|||+|||+.+++++|+++|+.||.|.+++|+.+. ...|||||+|.+.++|..|+ .|||..|+||.|+|....+
T Consensus 269 ~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~~~ 348 (352)
T TIGR01661 269 GYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFKTN 348 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEccC
Confidence 3579999999999999999999999999999999886 34789999999999999999 5999999999999987644
No 7
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.51 E-value=9.3e-14 Score=98.14 Aligned_cols=67 Identities=25% Similarity=0.438 Sum_probs=59.3
Q ss_pred EEEeCCCCcccHHHHHHHcccCCceeEEEEEecCC--CCcEEEEEEcChHHHHHHHh-hcCCeecceEEE
Q 027228 7 VQVKNVSDLAHEREIHEFFSFSGDIERIEILREYG--QSKTAFVTFKDAKALEIALL-LSGATIVDQIVS 73 (226)
Q Consensus 7 V~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~~--~~~~A~V~F~~~~aa~tAl~-Lng~~l~gr~I~ 73 (226)
|+|+|||+.+++++|++||+.+|.|..+.+..++. ..++|||+|.+++++..|+. ++|..|+|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999998753 46899999999999999995 666999999885
No 8
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.49 E-value=1.1e-13 Score=125.13 Aligned_cols=75 Identities=20% Similarity=0.352 Sum_probs=69.2
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCC---CCcEEEEEEcChHHHHHHH-hhcCCeecceEEEEeeCC
Q 027228 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYG---QSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPAE 78 (226)
Q Consensus 4 ~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~~---~~~~A~V~F~~~~aa~tAl-~Lng~~l~gr~I~V~~a~ 78 (226)
..+|||+|||+.+||++|++||+.||+|.+|+|+++.. ..|||||+|.++++|+.|| .|||..|.|+.|.|..+.
T Consensus 3 ~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 3 KTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 46999999999999999999999999999999998862 4689999999999999999 699999999999998654
No 9
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.44 E-value=4.2e-13 Score=124.18 Aligned_cols=75 Identities=24% Similarity=0.363 Sum_probs=69.2
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCC---CCcEEEEEEcChHHHHHHH-hhcCCeecceEEEEeeCC
Q 027228 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYG---QSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPAE 78 (226)
Q Consensus 4 ~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~~---~~~~A~V~F~~~~aa~tAl-~Lng~~l~gr~I~V~~a~ 78 (226)
.++|||+|||+++||++|+++|+.||+|++|+|+.+.. ..+||||+|.++++|+.|+ .|||..|.++.|+|..+.
T Consensus 107 ~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~a~ 185 (346)
T TIGR01659 107 GTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSYAR 185 (346)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeeccc
Confidence 57999999999999999999999999999999998863 3589999999999999999 699999999999998653
No 10
>smart00362 RRM_2 RNA recognition motif.
Probab=99.43 E-value=8.4e-13 Score=89.96 Aligned_cols=70 Identities=27% Similarity=0.404 Sum_probs=64.1
Q ss_pred EEEEeCCCCcccHHHHHHHcccCCceeEEEEEecC-CCCcEEEEEEcChHHHHHHH-hhcCCeecceEEEEe
Q 027228 6 TVQVKNVSDLAHEREIHEFFSFSGDIERIEILREY-GQSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSIT 75 (226)
Q Consensus 6 tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~-~~~~~A~V~F~~~~aa~tAl-~Lng~~l~gr~I~V~ 75 (226)
+|+|+|||+.+++++|+++|+.+|+|..+.+..++ ...++|||+|.+++++..|+ .|+|..+.|+.|.|.
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 58999999999999999999999999999999775 34689999999999999999 599999999999873
No 11
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.39 E-value=8.4e-13 Score=111.61 Aligned_cols=74 Identities=27% Similarity=0.377 Sum_probs=68.9
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCCCCcEEEEEEcChHHHHHHH-hhcCCeecceEEEEeeCCC
Q 027228 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPAEN 79 (226)
Q Consensus 4 ~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~~~~~~A~V~F~~~~aa~tAl-~Lng~~l~gr~I~V~~a~~ 79 (226)
.+.|||+||++.+++.||...|+.+|+|.+|+|...+ .+||||+|+|+.+|+.|+ .|||..|.|..|.|+....
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnP--PGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G 84 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNP--PGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTG 84 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecC--CCceEEeccCcccHHHHHhhcCCccccCceEEEEeecC
Confidence 5789999999999999999999999999999998854 889999999999999999 6999999999999986544
No 12
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.39 E-value=1.3e-12 Score=122.36 Aligned_cols=75 Identities=27% Similarity=0.465 Sum_probs=69.7
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCC---CCcEEEEEEcChHHHHHHHhhcCCeecceEEEEeeCC
Q 027228 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYG---QSKTAFVTFKDAKALEIALLLSGATIVDQIVSITPAE 78 (226)
Q Consensus 4 ~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~~---~~~~A~V~F~~~~aa~tAl~Lng~~l~gr~I~V~~a~ 78 (226)
.++|||+|||+.+++++|++||+.||+|.+|.|+.+.. ..|+|||+|.+.++|..||.|||..|.|++|.|....
T Consensus 89 ~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~l~g~~~~g~~i~v~~~~ 166 (457)
T TIGR01622 89 DRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALALTGQMLLGRPIIVQSSQ 166 (457)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHhCCCEECCeeeEEeecc
Confidence 57999999999999999999999999999999998752 4689999999999999999999999999999998653
No 13
>PLN03213 repressor of silencing 3; Provisional
Probab=99.38 E-value=1.3e-12 Score=124.65 Aligned_cols=76 Identities=16% Similarity=0.310 Sum_probs=69.8
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCCCCcEEEEEEcCh--HHHHHHH-hhcCCeecceEEEEeeCCCC
Q 027228 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYGQSKTAFVTFKDA--KALEIAL-LLSGATIVDQIVSITPAENY 80 (226)
Q Consensus 4 ~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~~~~~~A~V~F~~~--~aa~tAl-~Lng~~l~gr~I~V~~a~~~ 80 (226)
..+|||+||++.+|+++|+..|+.||.|.+|+|+++.+ +|||||+|..+ .++.+|+ .|||+.+.||.|+|..+..+
T Consensus 10 gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETG-RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAKP~ 88 (759)
T PLN03213 10 GVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKG-RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAKEH 88 (759)
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccC-CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeeccHH
Confidence 46899999999999999999999999999999997766 89999999988 6899999 69999999999999987543
No 14
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.35 E-value=2.6e-12 Score=126.40 Aligned_cols=77 Identities=22% Similarity=0.268 Sum_probs=70.3
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecC---CCCcEEEEEEcChHHHHHHH-hhcCCeecceEEEEeeCCC
Q 027228 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREY---GQSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPAEN 79 (226)
Q Consensus 4 ~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~---~~~~~A~V~F~~~~aa~tAl-~Lng~~l~gr~I~V~~a~~ 79 (226)
.++|||+|||+.+++++|+++|+.||+|.+|+|..+. ...|||||+|++++++..|+ .|||..|+||.|+|....+
T Consensus 107 ~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp~~ 186 (612)
T TIGR01645 107 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSN 186 (612)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccccc
Confidence 4789999999999999999999999999999999885 34789999999999999999 5999999999999986544
Q ss_pred C
Q 027228 80 Y 80 (226)
Q Consensus 80 ~ 80 (226)
.
T Consensus 187 ~ 187 (612)
T TIGR01645 187 M 187 (612)
T ss_pred c
Confidence 3
No 15
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.35 E-value=7.3e-12 Score=85.70 Aligned_cols=70 Identities=30% Similarity=0.455 Sum_probs=64.7
Q ss_pred EEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCC--CCcEEEEEEcChHHHHHHH-hhcCCeecceEEEEe
Q 027228 6 TVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYG--QSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSIT 75 (226)
Q Consensus 6 tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~~--~~~~A~V~F~~~~aa~tAl-~Lng~~l~gr~I~V~ 75 (226)
+|+|+|||+.+++++|+++|+.||.|..+.+..++. ..++|||+|.+++++..|+ .+++..+.|+.|.|.
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~ 73 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVE 73 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEe
Confidence 489999999999999999999999999999998763 4689999999999999999 599999999999986
No 16
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.32 E-value=5.4e-12 Score=121.89 Aligned_cols=72 Identities=15% Similarity=0.213 Sum_probs=67.3
Q ss_pred EEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCC---CCcEEEEEEcChHHHHHHH-hhcCCeecceEEEEeeC
Q 027228 6 TVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYG---QSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPA 77 (226)
Q Consensus 6 tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~~---~~~~A~V~F~~~~aa~tAl-~Lng~~l~gr~I~V~~a 77 (226)
+|||+|||+++||++|++||+.||.|.+|+|++|.. ..|||||+|.++++|+.|+ .||+..|.|+.|+|...
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s 77 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWS 77 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecc
Confidence 799999999999999999999999999999999863 3589999999999999999 69999999999999754
No 17
>smart00360 RRM RNA recognition motif.
Probab=99.32 E-value=8.2e-12 Score=84.56 Aligned_cols=67 Identities=30% Similarity=0.453 Sum_probs=61.0
Q ss_pred EeCCCCcccHHHHHHHcccCCceeEEEEEecCC---CCcEEEEEEcChHHHHHHH-hhcCCeecceEEEEe
Q 027228 9 VKNVSDLAHEREIHEFFSFSGDIERIEILREYG---QSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSIT 75 (226)
Q Consensus 9 V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~~---~~~~A~V~F~~~~aa~tAl-~Lng~~l~gr~I~V~ 75 (226)
|+|||+.+++++|+++|+.||.|..+.+..++. ..++|||+|.+++++..|+ .|+|..+.|+.|.|.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 589999999999999999999999999998752 3679999999999999999 699999999999874
No 18
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.31 E-value=8e-12 Score=115.69 Aligned_cols=77 Identities=22% Similarity=0.293 Sum_probs=68.5
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCC---CCcEEEEEEcChHHHHHHH-hhcCCeecc--eEEEEeeC
Q 027228 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYG---QSKTAFVTFKDAKALEIAL-LLSGATIVD--QIVSITPA 77 (226)
Q Consensus 4 ~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~~---~~~~A~V~F~~~~aa~tAl-~Lng~~l~g--r~I~V~~a 77 (226)
.++|||+|||+.+||++|+++|+.||+|.+++|.++.. ..++|||+|++.++|+.|+ .||+..|.+ ++|.|..+
T Consensus 193 ~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~a 272 (346)
T TIGR01659 193 DTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRLA 272 (346)
T ss_pred cceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEEC
Confidence 36899999999999999999999999999999998862 3579999999999999999 599999977 68999877
Q ss_pred CCC
Q 027228 78 ENY 80 (226)
Q Consensus 78 ~~~ 80 (226)
...
T Consensus 273 ~~~ 275 (346)
T TIGR01659 273 EEH 275 (346)
T ss_pred Ccc
Confidence 543
No 19
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.31 E-value=1e-11 Score=102.90 Aligned_cols=74 Identities=24% Similarity=0.405 Sum_probs=69.4
Q ss_pred cEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecC---CCCcEEEEEEcChHHHHHHH-hhcCCeecceEEEEeeCC
Q 027228 5 RTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREY---GQSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPAE 78 (226)
Q Consensus 5 ~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~---~~~~~A~V~F~~~~aa~tAl-~Lng~~l~gr~I~V~~a~ 78 (226)
++|||+|||+.+|+++|+++|..||.|.+|.+..+. ...++|||+|.+++.+..|+ .|+|..|.|+.|.|....
T Consensus 116 ~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~ 193 (306)
T COG0724 116 NTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQ 193 (306)
T ss_pred ceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeeccc
Confidence 799999999999999999999999999999999985 34789999999999999999 699999999999999864
No 20
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.31 E-value=4.1e-12 Score=116.00 Aligned_cols=76 Identities=18% Similarity=0.317 Sum_probs=70.5
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecC-CCCcEEEEEEcChHHHHHHH-hhcCCeecceEEEEeeCCC
Q 027228 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREY-GQSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPAEN 79 (226)
Q Consensus 4 ~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~-~~~~~A~V~F~~~~aa~tAl-~Lng~~l~gr~I~V~~a~~ 79 (226)
.+.+||+|||+...|-||+..|..+|+|.+|+|+-+. +++||+||+|++++++++|- .|+|+.+.||.|.|..+..
T Consensus 96 pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~ATa 173 (376)
T KOG0125|consen 96 PKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNATA 173 (376)
T ss_pred CceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEeccch
Confidence 3689999999999999999999999999999999765 77899999999999999998 7999999999999987643
No 21
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.29 E-value=1.4e-11 Score=115.40 Aligned_cols=79 Identities=23% Similarity=0.340 Sum_probs=71.7
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCC---CCcEEEEEEcChHHHHHHH-hhcCCeecceEEEEeeCCC
Q 027228 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYG---QSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPAEN 79 (226)
Q Consensus 4 ~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~~---~~~~A~V~F~~~~aa~tAl-~Lng~~l~gr~I~V~~a~~ 79 (226)
.++|||+|||+.+|+++|+++|+.||.|.+|.|..+.. ..++|||+|.++++|..|+ .|||..|.|+.|.|..+.+
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~ 265 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQD 265 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEccC
Confidence 37899999999999999999999999999999998863 3689999999999999999 5999999999999998775
Q ss_pred CCC
Q 027228 80 YVP 82 (226)
Q Consensus 80 ~~~ 82 (226)
...
T Consensus 266 ~~~ 268 (457)
T TIGR01622 266 STY 268 (457)
T ss_pred CCc
Confidence 443
No 22
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.29 E-value=1.1e-11 Score=122.09 Aligned_cols=75 Identities=15% Similarity=0.226 Sum_probs=69.6
Q ss_pred cEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCC---CCcEEEEEEcChHHHHHHH-hhcCCeecceEEEEeeCCC
Q 027228 5 RTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYG---QSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPAEN 79 (226)
Q Consensus 5 ~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~~---~~~~A~V~F~~~~aa~tAl-~Lng~~l~gr~I~V~~a~~ 79 (226)
++|||+||++.+++++|+++|+.||+|.+++|.++.. .+|||||+|++.+++..|+ .|||..|+|+.|+|..+..
T Consensus 205 ~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi~ 283 (612)
T TIGR01645 205 NRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVT 283 (612)
T ss_pred ceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecCC
Confidence 6899999999999999999999999999999998862 4689999999999999999 6999999999999987653
No 23
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.27 E-value=1.7e-11 Score=120.08 Aligned_cols=74 Identities=28% Similarity=0.416 Sum_probs=67.1
Q ss_pred CCCccEEEEeCCCCcccHHHHHHHcccC--CceeEEEEEecCCCCcEEEEEEcChHHHHHHH-hhcCCeecceEEEEeeC
Q 027228 1 MQQTRTVQVKNVSDLAHEREIHEFFSFS--GDIERIEILREYGQSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPA 77 (226)
Q Consensus 1 Ms~~~tV~V~NLs~~tTe~~L~efFs~c--G~I~sI~i~~d~~~~~~A~V~F~~~~aa~tAl-~Lng~~l~gr~I~V~~a 77 (226)
|+..++|||+||++.++|++|+++|+.| |+|++|.+.+ +||||+|++.++|.+|+ .|||.+|+|+.|.|+.+
T Consensus 230 ~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~r-----gfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~A 304 (578)
T TIGR01648 230 MAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIR-----DYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLA 304 (578)
T ss_pred cccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeec-----CeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 3345789999999999999999999999 9999998874 49999999999999999 59999999999999976
Q ss_pred CC
Q 027228 78 EN 79 (226)
Q Consensus 78 ~~ 79 (226)
..
T Consensus 305 kp 306 (578)
T TIGR01648 305 KP 306 (578)
T ss_pred cC
Confidence 44
No 24
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.26 E-value=2e-11 Score=117.95 Aligned_cols=75 Identities=20% Similarity=0.332 Sum_probs=69.2
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecC--CCCcEEEEEEcChHHHHHHH-hhcCCeecceEEEEeeCC
Q 027228 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREY--GQSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPAE 78 (226)
Q Consensus 4 ~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~--~~~~~A~V~F~~~~aa~tAl-~Lng~~l~gr~I~V~~a~ 78 (226)
..+|||+||++.+|+++|+++|+.||.|+++.+..+. ...+||||+|.++++|.+|+ .|||..|+|+.|.|..+.
T Consensus 285 ~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a~ 362 (562)
T TIGR01628 285 GVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLDEKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALAQ 362 (562)
T ss_pred CCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEECCCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEecc
Confidence 4689999999999999999999999999999999885 34689999999999999999 699999999999997654
No 25
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.25 E-value=2.6e-11 Score=115.02 Aligned_cols=76 Identities=20% Similarity=0.338 Sum_probs=69.7
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecC---CCCcEEEEEEcChHHHHHHH-hhcCCeecceEEEEeeCCC
Q 027228 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREY---GQSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPAEN 79 (226)
Q Consensus 4 ~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~---~~~~~A~V~F~~~~aa~tAl-~Lng~~l~gr~I~V~~a~~ 79 (226)
.++|||+|||+.+|+++|+++|+.||.|..+.|+.+. ...|||||+|.+++++..|+ .|||..|.|+.|.|..+..
T Consensus 295 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~ 374 (509)
T TIGR01642 295 KDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACV 374 (509)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECcc
Confidence 4689999999999999999999999999999999875 24689999999999999999 6999999999999988743
No 26
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.23 E-value=3.5e-11 Score=115.07 Aligned_cols=73 Identities=18% Similarity=0.201 Sum_probs=66.7
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCCCCcEEEEEEcChHHHHHHHh---hcCCeecceEEEEeeCCC
Q 027228 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIALL---LSGATIVDQIVSITPAEN 79 (226)
Q Consensus 4 ~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~~~~~~A~V~F~~~~aa~tAl~---Lng~~l~gr~I~V~~a~~ 79 (226)
+++|||+|||+.++|++|+++|+.||+|.+|.|+++ .++|||+|+++++|..|+. +|+..|.|+.|.|..+..
T Consensus 2 s~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~---k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s~~ 77 (481)
T TIGR01649 2 SPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPG---KRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYSTS 77 (481)
T ss_pred ccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECC---CCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEecCC
Confidence 579999999999999999999999999999999864 4699999999999999994 588999999999987643
No 27
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.23 E-value=4.2e-11 Score=114.49 Aligned_cols=73 Identities=18% Similarity=0.428 Sum_probs=67.6
Q ss_pred ccEEEEeCCCC-cccHHHHHHHcccCCceeEEEEEecCCCCcEEEEEEcChHHHHHHH-hhcCCeecceEEEEeeCC
Q 027228 4 TRTVQVKNVSD-LAHEREIHEFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPAE 78 (226)
Q Consensus 4 ~~tV~V~NLs~-~tTe~~L~efFs~cG~I~sI~i~~d~~~~~~A~V~F~~~~aa~tAl-~Lng~~l~gr~I~V~~a~ 78 (226)
+++|||+||++ .+|+++|+++|+.||.|.+|+++.+. .++|||+|.++++|..|+ .|||..|.|+.|.|..+.
T Consensus 275 ~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~--~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~ 349 (481)
T TIGR01649 275 GSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK--KETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSK 349 (481)
T ss_pred CCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC--CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcc
Confidence 46999999998 69999999999999999999998863 689999999999999999 599999999999998753
No 28
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.22 E-value=2.4e-11 Score=104.02 Aligned_cols=78 Identities=26% Similarity=0.317 Sum_probs=72.7
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCCCCcEEEEEEcChHHHHHHHh-hcCCeecceEEEEeeCCCCC
Q 027228 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIALL-LSGATIVDQIVSITPAENYV 81 (226)
Q Consensus 4 ~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~~~~~~A~V~F~~~~aa~tAl~-Lng~~l~gr~I~V~~a~~~~ 81 (226)
.++|||+|||+++.|.+|+++|..+|+|..|+|...++..+||||+|+|+.+|+.|+. -||..++|..|.|+.+...-
T Consensus 6 ~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprggr 84 (241)
T KOG0105|consen 6 SRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRGGR 84 (241)
T ss_pred cceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcccccccCcceEEEEeccCCC
Confidence 5799999999999999999999999999999999888888999999999999999995 99999999999999776543
No 29
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.19 E-value=5.1e-11 Score=112.99 Aligned_cols=76 Identities=20% Similarity=0.385 Sum_probs=66.1
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccC------------CceeEEEEEecCCCCcEEEEEEcChHHHHHHHhhcCCeecceE
Q 027228 4 TRTVQVKNVSDLAHEREIHEFFSFS------------GDIERIEILREYGQSKTAFVTFKDAKALEIALLLSGATIVDQI 71 (226)
Q Consensus 4 ~~tV~V~NLs~~tTe~~L~efFs~c------------G~I~sI~i~~d~~~~~~A~V~F~~~~aa~tAl~Lng~~l~gr~ 71 (226)
.++|||+|||+.+|+++|++||+.| +.|..+.+..+ .+||||+|.++++|..||.|||..|.|+.
T Consensus 175 ~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~~~---kg~afVeF~~~e~A~~Al~l~g~~~~g~~ 251 (509)
T TIGR01642 175 ARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNINKE---KNFAFLEFRTVEEATFAMALDSIIYSNVF 251 (509)
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEECCC---CCEEEEEeCCHHHHhhhhcCCCeEeeCce
Confidence 5799999999999999999999963 45666666543 57999999999999999999999999999
Q ss_pred EEEeeCCCCCC
Q 027228 72 VSITPAENYVP 82 (226)
Q Consensus 72 I~V~~a~~~~~ 82 (226)
|.|....++..
T Consensus 252 l~v~r~~~~~~ 262 (509)
T TIGR01642 252 LKIRRPHDYIP 262 (509)
T ss_pred eEecCccccCC
Confidence 99987777653
No 30
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.17 E-value=9.1e-11 Score=105.09 Aligned_cols=72 Identities=24% Similarity=0.337 Sum_probs=67.1
Q ss_pred CccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCCCCcEEEEEEcChHHHHHHH-hhcCCeecceEEEEeeC
Q 027228 3 QTRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPA 77 (226)
Q Consensus 3 ~~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~~~~~~A~V~F~~~~aa~tAl-~Lng~~l~gr~I~V~~a 77 (226)
+.+||||+||++.+||++||+.|+.+|.|..|++..+ .+||||.|++.++|..|+ .+||++|.|+.|+...-
T Consensus 163 ~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~---qGYaFVrF~tkEaAahAIv~mNntei~G~~VkCsWG 235 (321)
T KOG0148|consen 163 DNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD---QGYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCSWG 235 (321)
T ss_pred CCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc---cceEEEEecchhhHHHHHHHhcCceeCceEEEEecc
Confidence 4689999999999999999999999999999999987 569999999999999998 79999999999999754
No 31
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.14 E-value=1.1e-10 Score=114.49 Aligned_cols=74 Identities=22% Similarity=0.308 Sum_probs=66.2
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecC--CCCcEEEEEEcChHHHHHHH-hhcCCeec-ceEEEEeeC
Q 027228 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREY--GQSKTAFVTFKDAKALEIAL-LLSGATIV-DQIVSITPA 77 (226)
Q Consensus 4 ~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~--~~~~~A~V~F~~~~aa~tAl-~Lng~~l~-gr~I~V~~a 77 (226)
.++|||+|||++++|++|+++|+.||.|.+|+|++|. ...+||||+|.++++|+.|| .|||.+|. |+.|.|...
T Consensus 58 ~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S 135 (578)
T TIGR01648 58 GCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCIS 135 (578)
T ss_pred CCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccccc
Confidence 4799999999999999999999999999999999884 34689999999999999999 69999985 777777644
No 32
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.13 E-value=2.6e-10 Score=100.84 Aligned_cols=76 Identities=28% Similarity=0.364 Sum_probs=70.2
Q ss_pred CccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCC---CCcEEEEEEcChHHHHHHH-hhcCCeecceEEEEeeCC
Q 027228 3 QTRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYG---QSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPAE 78 (226)
Q Consensus 3 ~~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~~---~~~~A~V~F~~~~aa~tAl-~Lng~~l~gr~I~V~~a~ 78 (226)
+..||.|+|||.+++|++|+++|..+|.|.+|.|.+|.+ ..|||||+|++.+.|..|+ .|||.-.+.-.|+|+.+.
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEwsk 267 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWSK 267 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEecC
Confidence 467899999999999999999999999999999999984 3689999999999999999 699999999999998653
No 33
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.12 E-value=1.1e-10 Score=102.52 Aligned_cols=73 Identities=21% Similarity=0.259 Sum_probs=67.2
Q ss_pred cEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCC---CCcEEEEEEcChHHHHHHHhhcCCeecceEEEEeeC
Q 027228 5 RTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYG---QSKTAFVTFKDAKALEIALLLSGATIVDQIVSITPA 77 (226)
Q Consensus 5 ~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~~---~~~~A~V~F~~~~aa~tAl~Lng~~l~gr~I~V~~a 77 (226)
+.|||+||+|.++.+.|+++|..+|+|....++.|+. .+|++||+|+|.+++.+|+.=-+-.|+||.-.+..+
T Consensus 13 TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~piIdGR~aNcnlA 88 (247)
T KOG0149|consen 13 TKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPNPIIDGRKANCNLA 88 (247)
T ss_pred EEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCCCcccccccccchh
Confidence 4799999999999999999999999999999999973 468999999999999999998889999998888754
No 34
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.11 E-value=3e-10 Score=89.35 Aligned_cols=75 Identities=23% Similarity=0.289 Sum_probs=70.4
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCCCCcEEEEEEcChHHHHHHH-hhcCCeecceEEEEeeCC
Q 027228 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPAE 78 (226)
Q Consensus 4 ~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~~~~~~A~V~F~~~~aa~tAl-~Lng~~l~gr~I~V~~a~ 78 (226)
.+-+||.|||.++|.+++.|+|..+|.|..|++--..+..|.|||.|++-.+|++|+ .|+|-.+.++.+.|--+.
T Consensus 18 nriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq 93 (124)
T KOG0114|consen 18 NRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQ 93 (124)
T ss_pred heeEEEecCCccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecC
Confidence 467999999999999999999999999999999888888999999999999999999 799999999999997653
No 35
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.10 E-value=3.7e-10 Score=77.15 Aligned_cols=54 Identities=22% Similarity=0.418 Sum_probs=48.8
Q ss_pred HHHHcccCCceeEEEEEecCCCCcEEEEEEcChHHHHHHH-hhcCCeecceEEEEee
Q 027228 21 IHEFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITP 76 (226)
Q Consensus 21 L~efFs~cG~I~sI~i~~d~~~~~~A~V~F~~~~aa~tAl-~Lng~~l~gr~I~V~~ 76 (226)
|+++|+.+|+|.+|.+.++. .++|||+|.+.++|..|+ .|||..+.|++|.|..
T Consensus 1 L~~~f~~fG~V~~i~~~~~~--~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~ 55 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK--RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSY 55 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS--TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC--CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 68999999999999998665 589999999999999999 5999999999999974
No 36
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.10 E-value=1.2e-10 Score=101.19 Aligned_cols=75 Identities=23% Similarity=0.343 Sum_probs=69.8
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecC---CCCcEEEEEEcChHHHHHHH-hhcCCeecceEEEEeeCC
Q 027228 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREY---GQSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPAE 78 (226)
Q Consensus 4 ~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~---~~~~~A~V~F~~~~aa~tAl-~Lng~~l~gr~I~V~~a~ 78 (226)
..++.|-||.+.|+.++|+..|..||.|-.|.|..|. ...|||||-|.+..+|+.|+ .|+|.+|+|+.|.|..+.
T Consensus 13 m~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ar 91 (256)
T KOG4207|consen 13 MTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMAR 91 (256)
T ss_pred ceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhh
Confidence 4689999999999999999999999999999999997 45789999999999999999 699999999999998653
No 37
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.07 E-value=4.3e-10 Score=101.75 Aligned_cols=73 Identities=19% Similarity=0.302 Sum_probs=68.0
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecC---CCCcEEEEEEcChHHHHHHH-hhcCCeecceEEEEee
Q 027228 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREY---GQSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITP 76 (226)
Q Consensus 4 ~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~---~~~~~A~V~F~~~~aa~tAl-~Lng~~l~gr~I~V~~ 76 (226)
-+|+||+-|+..++|++|+..|+.+|+|+.|.|+.+. .+.|||||+|+++.++..|. .-+|..|+|+.|.|.-
T Consensus 101 y~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDv 177 (335)
T KOG0113|consen 101 YKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDV 177 (335)
T ss_pred cceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEe
Confidence 3799999999999999999999999999999999996 35789999999999999999 6999999999999964
No 38
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.05 E-value=4.3e-10 Score=107.04 Aligned_cols=77 Identities=22% Similarity=0.280 Sum_probs=71.5
Q ss_pred cEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCC---CCcEEEEEEcChHHHHHHH-hhcCCeecceEEEEeeCCCC
Q 027228 5 RTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYG---QSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPAENY 80 (226)
Q Consensus 5 ~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~~---~~~~A~V~F~~~~aa~tAl-~Lng~~l~gr~I~V~~a~~~ 80 (226)
++|||+|||+.++|++|.++|+..|.|.++++..|++ .+||+|++|.+++.+..|+ .|||.++.||.|+|..+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 7999999999999999999999999999999999873 4789999999999999999 69999999999999877655
Q ss_pred C
Q 027228 81 V 81 (226)
Q Consensus 81 ~ 81 (226)
.
T Consensus 99 ~ 99 (435)
T KOG0108|consen 99 K 99 (435)
T ss_pred c
Confidence 4
No 39
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.02 E-value=5e-10 Score=105.73 Aligned_cols=75 Identities=23% Similarity=0.385 Sum_probs=69.7
Q ss_pred CCCccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCCCCcEEEEEEcChHHHHHHH-hhcCCeecceEEEEeeCCC
Q 027228 1 MQQTRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPAEN 79 (226)
Q Consensus 1 Ms~~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~~~~~~A~V~F~~~~aa~tAl-~Lng~~l~gr~I~V~~a~~ 79 (226)
|+.-+-+||.||+.++||+.|++.|+.+|+|++|..++| ||||+|.+.+++-+|+ .+||.+|+|..|.|+.+..
T Consensus 256 ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD-----YaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAKP 330 (506)
T KOG0117|consen 256 MSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD-----YAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAKP 330 (506)
T ss_pred hhheeeeeeeccchhhhHHHHHHHHHhccceEEeecccc-----eeEEeecchHHHHHHHHHhcCceecCceEEEEecCC
Confidence 666778999999999999999999999999999999977 8999999999999999 6999999999999998764
Q ss_pred C
Q 027228 80 Y 80 (226)
Q Consensus 80 ~ 80 (226)
-
T Consensus 331 ~ 331 (506)
T KOG0117|consen 331 V 331 (506)
T ss_pred h
Confidence 3
No 40
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.02 E-value=4.3e-10 Score=95.81 Aligned_cols=78 Identities=18% Similarity=0.304 Sum_probs=71.7
Q ss_pred CccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCC---CCcEEEEEEcChHHHHHHH-hhcCCeecceEEEEeeCC
Q 027228 3 QTRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYG---QSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPAE 78 (226)
Q Consensus 3 ~~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~~---~~~~A~V~F~~~~aa~tAl-~Lng~~l~gr~I~V~~a~ 78 (226)
+..||||+||++.++++-|.|+|-+||+|.+|.|++|.. ..||||++|.+++.++=|+ .||+-.|-||+|+|..+.
T Consensus 8 qd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas 87 (203)
T KOG0131|consen 8 QDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKAS 87 (203)
T ss_pred CCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEecc
Confidence 357999999999999999999999999999999999872 4789999999999999999 699999999999999887
Q ss_pred CC
Q 027228 79 NY 80 (226)
Q Consensus 79 ~~ 80 (226)
..
T Consensus 88 ~~ 89 (203)
T KOG0131|consen 88 AH 89 (203)
T ss_pred cc
Confidence 43
No 41
>smart00361 RRM_1 RNA recognition motif.
Probab=98.97 E-value=2.3e-09 Score=76.91 Aligned_cols=58 Identities=19% Similarity=0.378 Sum_probs=50.2
Q ss_pred HHHHHHHcc----cCCceeEEE-EEecC-----CCCcEEEEEEcChHHHHHHH-hhcCCeecceEEEEe
Q 027228 18 EREIHEFFS----FSGDIERIE-ILREY-----GQSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSIT 75 (226)
Q Consensus 18 e~~L~efFs----~cG~I~sI~-i~~d~-----~~~~~A~V~F~~~~aa~tAl-~Lng~~l~gr~I~V~ 75 (226)
+++|+++|+ .+|+|.+|. +..+. ...|++||+|+++++|..|+ .|||..++||.|+++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~~ 70 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKAE 70 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEeC
Confidence 689999999 999999996 54443 24789999999999999999 699999999999873
No 42
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.95 E-value=2.6e-10 Score=97.34 Aligned_cols=82 Identities=21% Similarity=0.355 Sum_probs=74.5
Q ss_pred CccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCC---CCcEEEEEEcChHHHHHHH-hhcCCeecceEEEEeeCC
Q 027228 3 QTRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYG---QSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPAE 78 (226)
Q Consensus 3 ~~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~~---~~~~A~V~F~~~~aa~tAl-~Lng~~l~gr~I~V~~a~ 78 (226)
++.-|||+|||+..||.||--.||.+|+|..|.|++|.+ ..||||..|+|..+---|+ -|||..|.||.|+|....
T Consensus 34 dsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv~ 113 (219)
T KOG0126|consen 34 DSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHVS 113 (219)
T ss_pred cceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeecc
Confidence 466799999999999999999999999999999999973 3689999999999888888 699999999999999988
Q ss_pred CCCCCC
Q 027228 79 NYVPKP 84 (226)
Q Consensus 79 ~~~~~~ 84 (226)
.|..+.
T Consensus 114 ~Yk~pk 119 (219)
T KOG0126|consen 114 NYKKPK 119 (219)
T ss_pred cccCCc
Confidence 887643
No 43
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.91 E-value=3.3e-09 Score=99.21 Aligned_cols=77 Identities=19% Similarity=0.285 Sum_probs=69.4
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecC-CCCcEEEEEEcChHHHHHHH-hhcCCeecceEEEEeeCCCCC
Q 027228 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREY-GQSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPAENYV 81 (226)
Q Consensus 4 ~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~-~~~~~A~V~F~~~~aa~tAl-~Lng~~l~gr~I~V~~a~~~~ 81 (226)
...|||.||++.++.++|.++|+.+|+|.|+++..+. +..++ ||+|+++++|.+|+ +|||..+.|+.|.|.+...-.
T Consensus 76 ~~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~ 154 (369)
T KOG0123|consen 76 PSLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENGSKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKE 154 (369)
T ss_pred CceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCCceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchh
Confidence 3459999999999999999999999999999999987 45667 99999999999999 799999999999998765533
No 44
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=98.91 E-value=1.8e-09 Score=88.53 Aligned_cols=76 Identities=26% Similarity=0.316 Sum_probs=69.1
Q ss_pred cEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCC---CCcEEEEEEcChHHHHHHH-hhcCCeecceEEEEeeCCCC
Q 027228 5 RTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYG---QSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPAENY 80 (226)
Q Consensus 5 ~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~~---~~~~A~V~F~~~~aa~tAl-~Lng~~l~gr~I~V~~a~~~ 80 (226)
.-|||+||.+.+||++|.+.|..+|+|+.|.|--|.. -.|||.|+|+....|..|+ .|||+.|.|+.|.|..+-..
T Consensus 73 wIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~Fv~ 152 (170)
T KOG0130|consen 73 WIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWCFVK 152 (170)
T ss_pred EEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEEEec
Confidence 4699999999999999999999999999999987763 3689999999999999999 69999999999999876443
No 45
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=98.90 E-value=2.3e-09 Score=103.46 Aligned_cols=81 Identities=22% Similarity=0.365 Sum_probs=73.3
Q ss_pred CCC-ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCC---CCcEEEEEEcChHHHHHHH-hhcCCeecceEEEEe
Q 027228 1 MQQ-TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYG---QSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSIT 75 (226)
Q Consensus 1 Ms~-~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~~---~~~~A~V~F~~~~aa~tAl-~Lng~~l~gr~I~V~ 75 (226)
|++ +.|+||++||++++.++|.+|||..|+|.++.+..+++ ..||+||+|.-.++++.|+ .++++.|.||.|+|+
T Consensus 1 ~n~~g~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~ 80 (678)
T KOG0127|consen 1 ENKSGATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVD 80 (678)
T ss_pred CCCCCceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceecccc
Confidence 444 38999999999999999999999999999999999875 4789999999999999999 699999999999999
Q ss_pred eCCCCC
Q 027228 76 PAENYV 81 (226)
Q Consensus 76 ~a~~~~ 81 (226)
++....
T Consensus 81 ~A~~R~ 86 (678)
T KOG0127|consen 81 PAKKRA 86 (678)
T ss_pred cccccc
Confidence 876543
No 46
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.88 E-value=1.8e-09 Score=94.76 Aligned_cols=76 Identities=25% Similarity=0.409 Sum_probs=70.6
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCC---CCcEEEEEEcChHHHHHHH-hhcCCeecceEEEEeeCCC
Q 027228 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYG---QSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPAEN 79 (226)
Q Consensus 4 ~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~~---~~~~A~V~F~~~~aa~tAl-~Lng~~l~gr~I~V~~a~~ 79 (226)
.||+||++|...++|.-|+.-|-.+|.|+.|.++.|.+ .++|+||+|+..++|..|+ -||+.+|-||.|+|..+.+
T Consensus 10 KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~AkP 89 (298)
T KOG0111|consen 10 KRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAKP 89 (298)
T ss_pred ceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecCC
Confidence 58999999999999999999999999999999999873 4789999999999999999 6999999999999987643
No 47
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.87 E-value=5.4e-09 Score=98.92 Aligned_cols=76 Identities=20% Similarity=0.303 Sum_probs=69.7
Q ss_pred ccEEEEeCCCCcccHHHHHHHcc-cCCceeEEEEEecC--CCCcEEEEEEcChHHHHHHH-hhcCCeecceEEEEeeCCC
Q 027228 4 TRTVQVKNVSDLAHEREIHEFFS-FSGDIERIEILREY--GQSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPAEN 79 (226)
Q Consensus 4 ~~tV~V~NLs~~tTe~~L~efFs-~cG~I~sI~i~~d~--~~~~~A~V~F~~~~aa~tAl-~Lng~~l~gr~I~V~~a~~ 79 (226)
.|+||++|||+++.+.+|+++|. ..|+|++|+|+.|. ...++|.|+|++++.+++|+ .||...+.||+|.|...++
T Consensus 44 ~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~d 123 (608)
T KOG4212|consen 44 DRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKEDHD 123 (608)
T ss_pred cceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEeccCc
Confidence 36899999999999999999997 58999999999887 34789999999999999999 5999999999999987766
No 48
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=98.87 E-value=6e-09 Score=98.56 Aligned_cols=74 Identities=20% Similarity=0.263 Sum_probs=66.9
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecC---CCCcEEEEEEcChHHHHHHH-hhcCCeec-ceEEEEeeC
Q 027228 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREY---GQSKTAFVTFKDAKALEIAL-LLSGATIV-DQIVSITPA 77 (226)
Q Consensus 4 ~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~---~~~~~A~V~F~~~~aa~tAl-~Lng~~l~-gr~I~V~~a 77 (226)
++.|||+.||.++.|++|.-||...|+|-.++|++|+ ..+|+|||+|.+.+.|+.|+ +||+.+|. |+.|.|+-.
T Consensus 83 G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~S 161 (506)
T KOG0117|consen 83 GCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCVS 161 (506)
T ss_pred CceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEEe
Confidence 5689999999999999999999999999999999996 35789999999999999999 79999985 788777643
No 49
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=98.86 E-value=2.3e-09 Score=99.70 Aligned_cols=78 Identities=22% Similarity=0.259 Sum_probs=71.6
Q ss_pred cEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecC---CCCcEEEEEEcChHHHHHHH-hhcCCeecceEEEEeeCCCC
Q 027228 5 RTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREY---GQSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPAENY 80 (226)
Q Consensus 5 ~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~---~~~~~A~V~F~~~~aa~tAl-~Lng~~l~gr~I~V~~a~~~ 80 (226)
+.|||+.|++...|+.||.-|..+|+|++|+|.-|+ ...+||||+|+=|+++.-|| .|||..|+||.|+|.+..+.
T Consensus 114 cRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsNm 193 (544)
T KOG0124|consen 114 CRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSNM 193 (544)
T ss_pred HheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCCC
Confidence 579999999999999999999999999999998887 34789999999999999999 59999999999999977766
Q ss_pred CC
Q 027228 81 VP 82 (226)
Q Consensus 81 ~~ 82 (226)
.-
T Consensus 194 pQ 195 (544)
T KOG0124|consen 194 PQ 195 (544)
T ss_pred cc
Confidence 54
No 50
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.84 E-value=7.8e-09 Score=98.61 Aligned_cols=77 Identities=27% Similarity=0.366 Sum_probs=69.4
Q ss_pred CCccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecC-CCCcEEEEEEcChHHHHHHHhhcCCeecceEEEEeeCCC
Q 027228 2 QQTRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREY-GQSKTAFVTFKDAKALEIALLLSGATIVDQIVSITPAEN 79 (226)
Q Consensus 2 s~~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~-~~~~~A~V~F~~~~aa~tAl~Lng~~l~gr~I~V~~a~~ 79 (226)
....-|.+.+|||++|++||++||+.| .|+++.+.++. .+++-|||+|+++++++.||.+|-..+..|.|.|-.+..
T Consensus 8 ~~~~~vr~rGLPwsat~~ei~~Ff~~~-~I~~~~~~r~~Gr~sGeA~Ve~~seedv~~AlkkdR~~mg~RYIEVf~~~~ 85 (510)
T KOG4211|consen 8 STAFEVRLRGLPWSATEKEILDFFSNC-GIENLEIPRRNGRPSGEAYVEFTSEEDVEKALKKDRESMGHRYIEVFTAGG 85 (510)
T ss_pred CcceEEEecCCCccccHHHHHHHHhcC-ceeEEEEeccCCCcCcceEEEeechHHHHHHHHhhHHHhCCceEEEEccCC
Confidence 345679999999999999999999999 68999998884 568999999999999999999999999999999987643
No 51
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=98.82 E-value=8.3e-09 Score=99.68 Aligned_cols=73 Identities=27% Similarity=0.356 Sum_probs=67.3
Q ss_pred EEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCC--CCcEEEEEEcChHHHHHHH-hhcCCeecceEEEEeeCC
Q 027228 6 TVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYG--QSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPAE 78 (226)
Q Consensus 6 tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~~--~~~~A~V~F~~~~aa~tAl-~Lng~~l~gr~I~V~~a~ 78 (226)
.++|.||||.+.+.+|+..||.+|.|..|.|++.++ -+|||||.|.+..+|..|| -+||..|+||+|-|..+-
T Consensus 119 rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV 194 (678)
T KOG0127|consen 119 RLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAV 194 (678)
T ss_pred eEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeec
Confidence 589999999999999999999999999999997663 3699999999999999999 599999999999998653
No 52
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.82 E-value=6.2e-09 Score=91.79 Aligned_cols=78 Identities=24% Similarity=0.298 Sum_probs=71.2
Q ss_pred CCccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCC---CCcEEEEEEcChHHHHHHHhhcCCeecceEEEEeeCC
Q 027228 2 QQTRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYG---QSKTAFVTFKDAKALEIALLLSGATIVDQIVSITPAE 78 (226)
Q Consensus 2 s~~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~~---~~~~A~V~F~~~~aa~tAl~Lng~~l~gr~I~V~~a~ 78 (226)
.+.+.|+|+|+.+.+|.+++...|+.||.|..+.|..+.. ..+||||+|.+.+.+..||.|||..|.|+.|.|++..
T Consensus 99 ~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~l~gs~i~~~~i~vt~~r 178 (231)
T KOG4209|consen 99 VDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYKLDGSEIPGPAIEVTLKR 178 (231)
T ss_pred cCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhhcCCcccccccceeeeee
Confidence 3568999999999999999999999999999999998872 4689999999999999999999999999999998754
Q ss_pred C
Q 027228 79 N 79 (226)
Q Consensus 79 ~ 79 (226)
.
T Consensus 179 ~ 179 (231)
T KOG4209|consen 179 T 179 (231)
T ss_pred e
Confidence 3
No 53
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=98.77 E-value=2.9e-08 Score=89.05 Aligned_cols=74 Identities=20% Similarity=0.351 Sum_probs=68.5
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCC---CCcEEEEEEcChHHHHHHH-hhcCCeecceEEEEeeC
Q 027228 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYG---QSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPA 77 (226)
Q Consensus 4 ~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~~---~~~~A~V~F~~~~aa~tAl-~Lng~~l~gr~I~V~~a 77 (226)
+.+|||-||+|++.|.-|+++|+.+|.|.+|++++|.. .+||+||++.+-+.|..|+ .|||..|++|.|.|.-.
T Consensus 278 g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFK 355 (360)
T KOG0145|consen 278 GWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFK 355 (360)
T ss_pred eeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEe
Confidence 46999999999999999999999999999999999973 4689999999999999999 59999999999999754
No 54
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=98.72 E-value=1.3e-08 Score=95.19 Aligned_cols=79 Identities=24% Similarity=0.410 Sum_probs=71.3
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCC------CCcEEEEEEcChHHHHHHHhhcCCeecceEEEEeeC
Q 027228 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYG------QSKTAFVTFKDAKALEIALLLSGATIVDQIVSITPA 77 (226)
Q Consensus 4 ~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~~------~~~~A~V~F~~~~aa~tAl~Lng~~l~gr~I~V~~a 77 (226)
..-|+|.||+|++|.++++.+|.+.|+|..+.|....+ -.++|||-|.|+..+..|.+|.+++|.|+.|.|.|+
T Consensus 7 ~~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfvdraliv~p~ 86 (479)
T KOG4676|consen 7 LGVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFVDRALIVRPY 86 (479)
T ss_pred CceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhccceeeeeeEEEEec
Confidence 35799999999999999999999999999999987542 257999999999999999999999999999999998
Q ss_pred CCCCC
Q 027228 78 ENYVP 82 (226)
Q Consensus 78 ~~~~~ 82 (226)
.+...
T Consensus 87 ~~~~~ 91 (479)
T KOG4676|consen 87 GDEVI 91 (479)
T ss_pred CCCCC
Confidence 76554
No 55
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=98.70 E-value=4.5e-08 Score=87.83 Aligned_cols=77 Identities=19% Similarity=0.332 Sum_probs=70.1
Q ss_pred cEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecC---CCCcEEEEEEcChHHHHHHH-hhcCCeecceEEEEeeCCCC
Q 027228 5 RTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREY---GQSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPAENY 80 (226)
Q Consensus 5 ~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~---~~~~~A~V~F~~~~aa~tAl-~Lng~~l~gr~I~V~~a~~~ 80 (226)
..++|.-||...|++++|.+|+..|+|+++++++|. ..-|++||.|-++++|++|+ .|||-.|..+.|+|+-+...
T Consensus 42 TNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyARPS 121 (360)
T KOG0145|consen 42 TNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYARPS 121 (360)
T ss_pred ceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEeccCC
Confidence 468899999999999999999999999999999997 24689999999999999999 79999999999999977554
Q ss_pred C
Q 027228 81 V 81 (226)
Q Consensus 81 ~ 81 (226)
.
T Consensus 122 s 122 (360)
T KOG0145|consen 122 S 122 (360)
T ss_pred h
Confidence 3
No 56
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.61 E-value=6.1e-08 Score=91.92 Aligned_cols=71 Identities=15% Similarity=0.189 Sum_probs=63.5
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCCCCcEEEEEEcChHHHHHHH-hhcCCeecceEEEEee
Q 027228 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITP 76 (226)
Q Consensus 4 ~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~~~~~~A~V~F~~~~aa~tAl-~Lng~~l~gr~I~V~~ 76 (226)
.++|+|.|||.++|++.|++=|..||.|.+.+|...... ...|.|.+++.|+.|+ +|||..|+||.|.|+-
T Consensus 536 a~qIiirNlP~dfTWqmlrDKfre~G~v~yadime~Gks--kGVVrF~s~edAEra~a~Mngs~l~Gr~I~V~y 607 (608)
T KOG4212|consen 536 ACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIMENGKS--KGVVRFFSPEDAERACALMNGSRLDGRNIKVTY 607 (608)
T ss_pred ccEEEEecCCccccHHHHHHHHHhccceehhhhhccCCc--cceEEecCHHHHHHHHHHhccCcccCceeeeee
Confidence 468999999999999999999999999999999544422 3499999999999999 7999999999999974
No 57
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=98.61 E-value=5.9e-08 Score=87.97 Aligned_cols=71 Identities=23% Similarity=0.354 Sum_probs=66.5
Q ss_pred cEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCCCCcEEEEEEcChHHHHHHHh-hcCCeecceEEEEeeCCCC
Q 027228 5 RTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIALL-LSGATIVDQIVSITPAENY 80 (226)
Q Consensus 5 ~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~~~~~~A~V~F~~~~aa~tAl~-Lng~~l~gr~I~V~~a~~~ 80 (226)
-.+||+|||..+++.+|+.+|..+|+|..++|+.+ ++||..++..+++-|+. |+|-+|+|..|.|+...+-
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN-----YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN-----YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc-----cceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 36899999999999999999999999999999966 89999999999999996 9999999999999987665
No 58
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.59 E-value=7.2e-08 Score=89.46 Aligned_cols=73 Identities=19% Similarity=0.320 Sum_probs=67.7
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCC---CCcEEEEEEcChHHHHHHH-hhcCCeecceEEEEee
Q 027228 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYG---QSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITP 76 (226)
Q Consensus 4 ~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~~---~~~~A~V~F~~~~aa~tAl-~Lng~~l~gr~I~V~~ 76 (226)
...+||.-|.|-+|.++|.-+||.+|+|.++++++|.. .-++|||+|++.++.+.|. .|++..|++|.|.|.-
T Consensus 239 eNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDF 315 (479)
T KOG0415|consen 239 ENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDF 315 (479)
T ss_pred cceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeeh
Confidence 35799999999999999999999999999999999973 3589999999999999998 7999999999999974
No 59
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.59 E-value=1.2e-07 Score=87.60 Aligned_cols=73 Identities=27% Similarity=0.333 Sum_probs=66.4
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCCCCcEEEEEEcChHHHHHHH--hhcCCeecceEEEEeeCCC
Q 027228 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIAL--LLSGATIVDQIVSITPAEN 79 (226)
Q Consensus 4 ~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~~~~~~A~V~F~~~~aa~tAl--~Lng~~l~gr~I~V~~a~~ 79 (226)
..|+||+||-+.++|.+|+++|-.||+|++|.+... .+.|||+|.+..+++.|. .+|...|+|+.|.|.....
T Consensus 228 I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~---~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg~~ 302 (377)
T KOG0153|consen 228 IKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR---KGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWGRP 302 (377)
T ss_pred eeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc---cccceeeehhhHHHHHHHHhhcceeeecceEEEEEeCCC
Confidence 479999999999999999999999999999999866 459999999999999987 5998999999999995555
No 60
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.57 E-value=1.6e-07 Score=87.93 Aligned_cols=71 Identities=20% Similarity=0.223 Sum_probs=65.1
Q ss_pred cEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCCCCcEEEEEEcChHHHHHHH-hhcCCeecceEEEEeeCC
Q 027228 5 RTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPAE 78 (226)
Q Consensus 5 ~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~~~~~~A~V~F~~~~aa~tAl-~Lng~~l~gr~I~V~~a~ 78 (226)
.++||+ +++||..|.++|+..|+|.+|++++|-...|+|||.|.++.+++.|| .||...|.|++|+|-+..
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~tslgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~ 73 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDATSLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQ 73 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecCCccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhc
Confidence 368888 99999999999999999999999999844689999999999999999 699999999999997543
No 61
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.54 E-value=1.8e-07 Score=88.82 Aligned_cols=76 Identities=25% Similarity=0.249 Sum_probs=67.2
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecC--C-CCcEEEEEEcChHHHHHHHhhcCCeecceEEEEeeCCC
Q 027228 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREY--G-QSKTAFVTFKDAKALEIALLLSGATIVDQIVSITPAEN 79 (226)
Q Consensus 4 ~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~--~-~~~~A~V~F~~~~aa~tAl~Lng~~l~gr~I~V~~a~~ 79 (226)
..+|||.|||+++++++|+++|..+|.|+...|.... + ..+||||+|++.++++.|+.-+=-.|+++.+.|+....
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~Asp~~ig~~kl~Veek~~ 366 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEASPLEIGGRKLNVEEKRP 366 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcCccccCCeeEEEEeccc
Confidence 4579999999999999999999999999999887643 2 23899999999999999999998889999999986544
No 62
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=98.52 E-value=1.2e-07 Score=91.53 Aligned_cols=76 Identities=20% Similarity=0.320 Sum_probs=69.2
Q ss_pred EEEeCCCCcccHHHHHHHcccCCceeEEEEEecC---CCCcEEEEEEcChHHHHHHH-hhcCCeecceEEEEeeCCCCCC
Q 027228 7 VQVKNVSDLAHEREIHEFFSFSGDIERIEILREY---GQSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPAENYVP 82 (226)
Q Consensus 7 V~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~---~~~~~A~V~F~~~~aa~tAl-~Lng~~l~gr~I~V~~a~~~~~ 82 (226)
+||+||.++.+|++|+..|..+|+|+.|.+..|. ..+||+||+|.+.+.+..|+ .|||-+|-||.|+|....+...
T Consensus 281 l~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~r~~ 360 (549)
T KOG0147|consen 281 LYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTERVD 360 (549)
T ss_pred hhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeeeecc
Confidence 8999999999999999999999999999999985 34789999999999999998 6999999999999987655444
No 63
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.52 E-value=2.7e-07 Score=80.66 Aligned_cols=76 Identities=26% Similarity=0.370 Sum_probs=70.0
Q ss_pred ccEEEEeCCCCcccHHHHHH----HcccCCceeEEEEEecCCCCcEEEEEEcChHHHHHHH-hhcCCeecceEEEEeeCC
Q 027228 4 TRTVQVKNVSDLAHEREIHE----FFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPAE 78 (226)
Q Consensus 4 ~~tV~V~NLs~~tTe~~L~e----fFs~cG~I~sI~i~~d~~~~~~A~V~F~~~~aa~tAl-~Lng~~l~gr~I~V~~a~ 78 (226)
..|+||.||...+..++|+. +||.+|+|..|....-+.-+|-|||.|.+.+++..|+ .|+|-.+-|++++|..+.
T Consensus 9 n~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqyA~ 88 (221)
T KOG4206|consen 9 NGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQYAK 88 (221)
T ss_pred CceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccCchhheeccc
Confidence 45999999999999999998 9999999999999887777899999999999999999 699999999999998764
Q ss_pred C
Q 027228 79 N 79 (226)
Q Consensus 79 ~ 79 (226)
.
T Consensus 89 s 89 (221)
T KOG4206|consen 89 S 89 (221)
T ss_pred C
Confidence 3
No 64
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.51 E-value=2.2e-07 Score=91.97 Aligned_cols=72 Identities=24% Similarity=0.348 Sum_probs=66.6
Q ss_pred EEEeCCCCcccHHHHHHHcccCCceeEEEEEecCC------CCcEEEEEEcChHHHHHHH-hhcCCeecceEEEEeeCC
Q 027228 7 VQVKNVSDLAHEREIHEFFSFSGDIERIEILREYG------QSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPAE 78 (226)
Q Consensus 7 V~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~~------~~~~A~V~F~~~~aa~tAl-~Lng~~l~gr~I~V~~a~ 78 (226)
+||.||++.+|.+++...|+..|.|.++.|...+. +.||+||+|.+++.|..|+ .|+|+.|+|+.|.|...+
T Consensus 518 lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~ 596 (725)
T KOG0110|consen 518 LFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISE 596 (725)
T ss_pred hhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEecc
Confidence 99999999999999999999999999999986553 2499999999999999999 699999999999998877
No 65
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.50 E-value=2.3e-07 Score=83.49 Aligned_cols=74 Identities=19% Similarity=0.313 Sum_probs=67.9
Q ss_pred EEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCC---CCcEEEEEEcChHHHHHHH-hhcCCeecceEEEEeeCCC
Q 027228 6 TVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYG---QSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPAEN 79 (226)
Q Consensus 6 tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~~---~~~~A~V~F~~~~aa~tAl-~Lng~~l~gr~I~V~~a~~ 79 (226)
-|||+.|++.++-++||+-|..+|+|...++++|.. .+|++||.|-+.++|+.|+ .|||.=|++|.|+-..+..
T Consensus 64 hvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATR 141 (321)
T KOG0148|consen 64 HVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATR 141 (321)
T ss_pred eEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeecccccc
Confidence 589999999999999999999999999999999973 4689999999999999999 6999999999999865543
No 66
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=98.50 E-value=1.3e-07 Score=89.39 Aligned_cols=79 Identities=29% Similarity=0.348 Sum_probs=68.2
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCC--CCcEEEEEEcChHHHHHHH-hhcCCe-ecc--eEEEEeeC
Q 027228 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYG--QSKTAFVTFKDAKALEIAL-LLSGAT-IVD--QIVSITPA 77 (226)
Q Consensus 4 ~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~~--~~~~A~V~F~~~~aa~tAl-~Lng~~-l~g--r~I~V~~a 77 (226)
.+.+||+-|+..+||.+|+++|+.+|.|+.+.|.+++. .+|+|||+|...+-|..|+ .|||+. +.| .+|.|.-+
T Consensus 124 e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVkFA 203 (510)
T KOG0144|consen 124 ERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVKFA 203 (510)
T ss_pred chhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEEec
Confidence 46789999999999999999999999999999999873 5789999999999999999 599974 555 47888876
Q ss_pred CCCCC
Q 027228 78 ENYVP 82 (226)
Q Consensus 78 ~~~~~ 82 (226)
..-.+
T Consensus 204 Dtqkd 208 (510)
T KOG0144|consen 204 DTQKD 208 (510)
T ss_pred ccCCC
Confidence 54433
No 67
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.48 E-value=1.3e-07 Score=86.83 Aligned_cols=80 Identities=18% Similarity=0.234 Sum_probs=72.3
Q ss_pred CccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecC---CCCcEEEEEEcChHHHHHHHhhcCCeecceEEEEeeCCC
Q 027228 3 QTRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREY---GQSKTAFVTFKDAKALEIALLLSGATIVDQIVSITPAEN 79 (226)
Q Consensus 3 ~~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~---~~~~~A~V~F~~~~aa~tAl~Lng~~l~gr~I~V~~a~~ 79 (226)
+...++|++|+|.++++.|+++|+.+|+|..+.+.+++ ...+|.||+|.+++.+..+|...-..|+|+.|.+.++-.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~h~~dgr~ve~k~av~ 84 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNARTHKLDGRSVEPKRAVS 84 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecccccccCCccccceeccC
Confidence 46789999999999999999999999999999999987 346899999999999999999888999999999998765
Q ss_pred CCC
Q 027228 80 YVP 82 (226)
Q Consensus 80 ~~~ 82 (226)
...
T Consensus 85 r~~ 87 (311)
T KOG4205|consen 85 RED 87 (311)
T ss_pred ccc
Confidence 544
No 68
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.45 E-value=4.8e-07 Score=83.55 Aligned_cols=75 Identities=20% Similarity=0.309 Sum_probs=66.4
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeE--------EEEEecC-C-CCcEEEEEEcChHHHHHHH-hhcCCeecceEE
Q 027228 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIER--------IEILREY-G-QSKTAFVTFKDAKALEIAL-LLSGATIVDQIV 72 (226)
Q Consensus 4 ~~tV~V~NLs~~tTe~~L~efFs~cG~I~s--------I~i~~d~-~-~~~~A~V~F~~~~aa~tAl-~Lng~~l~gr~I 72 (226)
...|||+|||+++|-+++.++|+.||-|.+ |.|.++. + ..|-|.+.|-..+++.-|+ +||+..|.|+.|
T Consensus 134 Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~~~ 213 (382)
T KOG1548|consen 134 NTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRGKKL 213 (382)
T ss_pred CceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccCcEE
Confidence 356999999999999999999999999864 7777775 3 3688999999999999999 799999999999
Q ss_pred EEeeCC
Q 027228 73 SITPAE 78 (226)
Q Consensus 73 ~V~~a~ 78 (226)
+|..+.
T Consensus 214 rVerAk 219 (382)
T KOG1548|consen 214 RVERAK 219 (382)
T ss_pred EEehhh
Confidence 999773
No 69
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.41 E-value=5.2e-07 Score=90.17 Aligned_cols=75 Identities=24% Similarity=0.332 Sum_probs=68.9
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCCCCcEEEEEEcChHHHHHHH-hhcCCeecceEEEEeeCCCCC
Q 027228 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPAENYV 81 (226)
Q Consensus 4 ~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~~~~~~A~V~F~~~~aa~tAl-~Lng~~l~gr~I~V~~a~~~~ 81 (226)
++|++|++|+.+++|.||.++|..||+|.+|.|+.. .++|||++...++|++|| .|++..+.++.|+|..+-...
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~---R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g~G 496 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP---RGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVGKG 496 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeeccC---CceeEEEEeehhHHHHHHHHHhcccccceeeEEeeeccCC
Confidence 589999999999999999999999999999999855 679999999999999999 799999999999998765544
No 70
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.41 E-value=7.6e-08 Score=84.41 Aligned_cols=76 Identities=22% Similarity=0.275 Sum_probs=69.3
Q ss_pred CccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecC-CCCcEEEEEEcChHHHHHHH-hhcCCeecceEEEEeeCC
Q 027228 3 QTRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREY-GQSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPAE 78 (226)
Q Consensus 3 ~~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~-~~~~~A~V~F~~~~aa~tAl-~Lng~~l~gr~I~V~~a~ 78 (226)
+.+|++|.|+...++|+-|.|+|-..|+|-.+.|..+. ...+||||.|+++-++.-|+ |+||-.|.+++|.|++-.
T Consensus 8 ~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~kFa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~ 85 (267)
T KOG4454|consen 8 MDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQKFAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLRC 85 (267)
T ss_pred hhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCceeeeecccccchhhhhhhcccchhccchhhccccc
Confidence 46899999999999999999999999999999998776 34569999999999999999 899999999999998643
No 71
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.39 E-value=4.3e-07 Score=83.40 Aligned_cols=79 Identities=16% Similarity=0.230 Sum_probs=72.1
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCC---CCcEEEEEEcChHHHHHHHhhcCCeecceEEEEeeCCCC
Q 027228 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYG---QSKTAFVTFKDAKALEIALLLSGATIVDQIVSITPAENY 80 (226)
Q Consensus 4 ~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~~---~~~~A~V~F~~~~aa~tAl~Lng~~l~gr~I~V~~a~~~ 80 (226)
.+.|||++||+.+++++++++|..+|.|..+.+..|.. ..+|+||+|.++++++.++...-+.|.|+.+.|..+..-
T Consensus 97 tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~~~f~~~~gk~vevkrA~pk 176 (311)
T KOG4205|consen 97 TKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTLQKFHDFNGKKVEVKRAIPK 176 (311)
T ss_pred eeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecccceeeecCceeeEeeccch
Confidence 35899999999999999999999999999999998874 468999999999999999999999999999999988655
Q ss_pred CC
Q 027228 81 VP 82 (226)
Q Consensus 81 ~~ 82 (226)
+.
T Consensus 177 ~~ 178 (311)
T KOG4205|consen 177 EV 178 (311)
T ss_pred hh
Confidence 43
No 72
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=98.35 E-value=4.3e-07 Score=82.48 Aligned_cols=68 Identities=21% Similarity=0.315 Sum_probs=63.4
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCCCCcEEEEEEcChHHHHHHH-hhcCCeecceEEEEee
Q 027228 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITP 76 (226)
Q Consensus 4 ~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~~~~~~A~V~F~~~~aa~tAl-~Lng~~l~gr~I~V~~ 76 (226)
+.+++|+||++.++-++|++.|..+|.|..++|.++ ++||.|+-.+++..|+ -|||++|.|+++.|..
T Consensus 78 stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd-----y~fvh~d~~eda~~air~l~~~~~~gk~m~vq~ 146 (346)
T KOG0109|consen 78 STKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD-----YAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQL 146 (346)
T ss_pred ccccccCCCCccccCHHHhhhhcccCCceeeeeecc-----eeEEEEeeccchHHHHhcccccccccceeeeee
Confidence 457999999999999999999999999999999855 8999999999999999 5999999999999964
No 73
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=98.34 E-value=9.9e-07 Score=83.56 Aligned_cols=75 Identities=20% Similarity=0.343 Sum_probs=64.9
Q ss_pred cEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecC---CCCcEEEEEEcChHHHHHHH--hhcCCeecce--EEEEeeC
Q 027228 5 RTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREY---GQSKTAFVTFKDAKALEIAL--LLSGATIVDQ--IVSITPA 77 (226)
Q Consensus 5 ~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~---~~~~~A~V~F~~~~aa~tAl--~Lng~~l~gr--~I~V~~a 77 (226)
-.+||+-||..++|.|||++|..+|.|..|.|++|+ ...++|||+|.+.+++..|+ +-|-.+|-|- +|.|.++
T Consensus 35 vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqvk~A 114 (510)
T KOG0144|consen 35 VKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQVKYA 114 (510)
T ss_pred hhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceeeccc
Confidence 468999999999999999999999999999999997 35789999999999999999 4566677664 6777776
Q ss_pred CC
Q 027228 78 EN 79 (226)
Q Consensus 78 ~~ 79 (226)
+.
T Consensus 115 d~ 116 (510)
T KOG0144|consen 115 DG 116 (510)
T ss_pred ch
Confidence 43
No 74
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.25 E-value=2.9e-06 Score=75.53 Aligned_cols=75 Identities=20% Similarity=0.276 Sum_probs=67.5
Q ss_pred cEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecC--CCCcEEEEEEcChHHHHHHH-hhcCCeecceEEEEeeCCC
Q 027228 5 RTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREY--GQSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPAEN 79 (226)
Q Consensus 5 ~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~--~~~~~A~V~F~~~~aa~tAl-~Lng~~l~gr~I~V~~a~~ 79 (226)
..|+|+|||..++++||+++|..+|.++.+-+-.++ ...++|-|.|+..++|..|+ .+||..|+|+++.+.....
T Consensus 84 ~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~~ 161 (243)
T KOG0533|consen 84 TKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIISS 161 (243)
T ss_pred ceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEecC
Confidence 579999999999999999999999999999998876 35689999999999999999 6999999999998875443
No 75
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=98.25 E-value=1.3e-06 Score=74.79 Aligned_cols=74 Identities=18% Similarity=0.288 Sum_probs=64.2
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeE-EEEEecC---CCCcEEEEEEcChHHHHHHH-hhcCCeecceEEEEeeC
Q 027228 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIER-IEILREY---GQSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPA 77 (226)
Q Consensus 4 ~~tV~V~NLs~~tTe~~L~efFs~cG~I~s-I~i~~d~---~~~~~A~V~F~~~~aa~tAl-~Lng~~l~gr~I~V~~a 77 (226)
+..+||+||.+.+.|.-|.+.||.+|.|-+ =++.+++ ++.+|+||.|.+.++..+|+ .+||..+..|+|+|+-+
T Consensus 96 ganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ya 174 (203)
T KOG0131|consen 96 GANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVSYA 174 (203)
T ss_pred cccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEEEE
Confidence 357899999999999999999999999765 3555554 34679999999999999999 69999999999999865
No 76
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=98.23 E-value=3.9e-07 Score=88.06 Aligned_cols=74 Identities=26% Similarity=0.463 Sum_probs=68.6
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCC---CCcEEEEEEcChHHHHHHHhhcCCeecceEEEEeeC
Q 027228 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYG---QSKTAFVTFKDAKALEIALLLSGATIVDQIVSITPA 77 (226)
Q Consensus 4 ~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~~---~~~~A~V~F~~~~aa~tAl~Lng~~l~gr~I~V~~a 77 (226)
.+|||+--|+...++.+|.+||+..|+|..|.|+.|.. ..+.|||+|.|.+++..|+.|+|..+.|.+|.|.+.
T Consensus 179 ~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aiaLsGqrllg~pv~vq~s 255 (549)
T KOG0147|consen 179 QRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIALSGQRLLGVPVIVQLS 255 (549)
T ss_pred HHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhhhcCCcccCceeEeccc
Confidence 57889999999999999999999999999999999973 468999999999999999999999999999999753
No 77
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.23 E-value=1e-06 Score=77.08 Aligned_cols=70 Identities=23% Similarity=0.374 Sum_probs=64.0
Q ss_pred cEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCCCCcEEEEEEcChHHHHHHH-hhcCCeecceEEEEeeCCC
Q 027228 5 RTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPAEN 79 (226)
Q Consensus 5 ~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~~~~~~A~V~F~~~~aa~tAl-~Lng~~l~gr~I~V~~a~~ 79 (226)
..|||++||+.+.+.+|.+||..+|+|..+.|. .+|+||+|+|+.+|.-|+ -|||.+|.|-.+.|..+..
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk-----~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~ 72 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK-----NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARG 72 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee-----cccceeccCchhhhhcccchhcCceecceeeeeecccc
Confidence 469999999999999999999999999999995 779999999999999999 5999999999887776653
No 78
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.12 E-value=5.1e-06 Score=81.22 Aligned_cols=78 Identities=18% Similarity=0.299 Sum_probs=71.0
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecC---CCCcEEEEEEcChHHHHHHH-hhcCCeecceEEEEeeCCC
Q 027228 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREY---GQSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPAEN 79 (226)
Q Consensus 4 ~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~---~~~~~A~V~F~~~~aa~tAl-~Lng~~l~gr~I~V~~a~~ 79 (226)
++.++|++|+..+.-.+|+.+||.+|+|....++.+. +..+|+||++.+...|.+++ .|.-++|.|+-|.|..+.+
T Consensus 405 gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaKN 484 (940)
T KOG4661|consen 405 GRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAKN 484 (940)
T ss_pred ccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeeccc
Confidence 5789999999999999999999999999999998764 56789999999999999999 7999999999999998765
Q ss_pred CC
Q 027228 80 YV 81 (226)
Q Consensus 80 ~~ 81 (226)
-.
T Consensus 485 Ep 486 (940)
T KOG4661|consen 485 EP 486 (940)
T ss_pred Cc
Confidence 43
No 79
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.11 E-value=2.8e-06 Score=84.31 Aligned_cols=76 Identities=18% Similarity=0.342 Sum_probs=68.6
Q ss_pred cEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCC---CCcEEEEEEcChHHHHHHH-hhcCCeecceEEEEeeCCCC
Q 027228 5 RTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYG---QSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPAENY 80 (226)
Q Consensus 5 ~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~~---~~~~A~V~F~~~~aa~tAl-~Lng~~l~gr~I~V~~a~~~ 80 (226)
..|+|.|||+.++-++|+++|+.+|.|.+|+|+...+ ..|||||+|-.+..+..|+ .|.++.|-||.|.+..+.+.
T Consensus 614 tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA~~d 693 (725)
T KOG0110|consen 614 TKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWAKSD 693 (725)
T ss_pred ceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehhccc
Confidence 5799999999999999999999999999999987632 3789999999999999999 68899999999999877553
No 80
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=98.07 E-value=7.4e-06 Score=76.66 Aligned_cols=73 Identities=16% Similarity=0.273 Sum_probs=67.3
Q ss_pred cEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecC---CCCcEEEEEEcChHHHHHHH-hhcCCeecceEEEEeeC
Q 027228 5 RTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREY---GQSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPA 77 (226)
Q Consensus 5 ~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~---~~~~~A~V~F~~~~aa~tAl-~Lng~~l~gr~I~V~~a 77 (226)
..|||..+.++.+|+||+..|.-+|+|.++.+.+.+ +.+||+||+|.+.++-..|+ .||--.|+|+.|+|-.+
T Consensus 211 nRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~ 287 (544)
T KOG0124|consen 211 NRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKC 287 (544)
T ss_pred heEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEecccc
Confidence 479999999999999999999999999999999887 45789999999999999999 59999999999999654
No 81
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.05 E-value=2.9e-06 Score=82.26 Aligned_cols=68 Identities=24% Similarity=0.310 Sum_probs=62.7
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCCCCcEEEEEEcChHHHHHHH-hhcCCeecceEEE
Q 027228 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIAL-LLSGATIVDQIVS 73 (226)
Q Consensus 4 ~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~~~~~~A~V~F~~~~aa~tAl-~Lng~~l~gr~I~ 73 (226)
.+++.|.|||..+++++|+..|+-+|+|+.|++.+. +.+..||+|-|-..|++|| .||+.+|.|+.|.
T Consensus 75 ~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~--~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 75 QGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPN--KRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred cceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccc--cCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 479999999999999999999999999999776554 4689999999999999999 6999999999998
No 82
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.04 E-value=1.2e-05 Score=69.92 Aligned_cols=72 Identities=21% Similarity=0.346 Sum_probs=63.0
Q ss_pred EEEEeCCCCcccHHHHHHHcccC-CceeEEEEEecC---CCCcEEEEEEcChHHHHHHH-hhcCCeecceEEEEeeC
Q 027228 6 TVQVKNVSDLAHEREIHEFFSFS-GDIERIEILREY---GQSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPA 77 (226)
Q Consensus 6 tV~V~NLs~~tTe~~L~efFs~c-G~I~sI~i~~d~---~~~~~A~V~F~~~~aa~tAl-~Lng~~l~gr~I~V~~a 77 (226)
-++|..||..+-|.++..+|... |.+.++++.++. ++.+||||+|++++-|+-|- .||+..|.++.|.+.--
T Consensus 51 ~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vm 127 (214)
T KOG4208|consen 51 VVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVM 127 (214)
T ss_pred ceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEe
Confidence 47899999999999999998765 899999997775 35789999999999999877 79999999999888744
No 83
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.95 E-value=1.9e-05 Score=61.75 Aligned_cols=57 Identities=23% Similarity=0.387 Sum_probs=37.6
Q ss_pred cEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCCCCcEEEEEEcChHHHHHHH-hhcC
Q 027228 5 RTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIAL-LLSG 64 (226)
Q Consensus 5 ~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~~~~~~A~V~F~~~~aa~tAl-~Lng 64 (226)
..|++.|++..++.++|++.|+.+|+|..|.+.+. ...|||.|.++++|+.|+ .+..
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G---~~~g~VRf~~~~~A~~a~~~~~~ 59 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRG---DTEGYVRFKTPEAAQKALEKLKE 59 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT----SEEEEEESS---HHHHHHHHHH
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCC---CCEEEEEECCcchHHHHHHHHHh
Confidence 46899999999999999999999999999999754 348999999999999998 3443
No 84
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=97.92 E-value=4.3e-05 Score=67.57 Aligned_cols=75 Identities=23% Similarity=0.215 Sum_probs=61.7
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecC--C--CCcEEEEEEcChHHHHHHH-hhcCCeec---ceEEEEe
Q 027228 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREY--G--QSKTAFVTFKDAKALEIAL-LLSGATIV---DQIVSIT 75 (226)
Q Consensus 4 ~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~--~--~~~~A~V~F~~~~aa~tAl-~Lng~~l~---gr~I~V~ 75 (226)
.||+||++||.++..++|..+|..|---+...|.... + .+.+|||+|.+.+.|..|+ .|||..|+ ++.|+|+
T Consensus 34 VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhiE 113 (284)
T KOG1457|consen 34 VRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHIE 113 (284)
T ss_pred cceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEee
Confidence 5899999999999999999999987555655554333 2 2469999999999999999 69999997 5688887
Q ss_pred eCC
Q 027228 76 PAE 78 (226)
Q Consensus 76 ~a~ 78 (226)
.+.
T Consensus 114 lAK 116 (284)
T KOG1457|consen 114 LAK 116 (284)
T ss_pred ehh
Confidence 654
No 85
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.92 E-value=2.5e-05 Score=53.91 Aligned_cols=52 Identities=23% Similarity=0.284 Sum_probs=43.8
Q ss_pred cEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCCCCcEEEEEEcChHHHHHHH
Q 027228 5 RTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIAL 60 (226)
Q Consensus 5 ~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~~~~~~A~V~F~~~~aa~tAl 60 (226)
+.|-|++.++...+. |.++|..||+|.++.+. ......||.|+++.++++||
T Consensus 2 ~wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~~~---~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEE-VLEHFASFGEIVDIYVP---ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHH-HHHHHHhcCCEEEEEcC---CCCcEEEEEECCHHHHHhhC
Confidence 679999999887755 55588889999999987 23569999999999999986
No 86
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=97.88 E-value=2.6e-05 Score=74.93 Aligned_cols=73 Identities=22% Similarity=0.266 Sum_probs=61.9
Q ss_pred cEEEEeCCCCcccHHHHHHHcccCCceeE-EEEEecC--CCCcEEEEEEcChHHHHHHHhhcCCeecceEEEEeeC
Q 027228 5 RTVQVKNVSDLAHEREIHEFFSFSGDIER-IEILREY--GQSKTAFVTFKDAKALEIALLLSGATIVDQIVSITPA 77 (226)
Q Consensus 5 ~tV~V~NLs~~tTe~~L~efFs~cG~I~s-I~i~~d~--~~~~~A~V~F~~~~aa~tAl~Lng~~l~gr~I~V~~a 77 (226)
..|...+||+.||++||.+||+-.=-+.. |-++.+. ..++-|||.|++++.++.||.-+...|+-|.|.|-++
T Consensus 104 ~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~rhre~iGhRYIEvF~S 179 (510)
T KOG4211|consen 104 GVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALGRHRENIGHRYIEVFRS 179 (510)
T ss_pred ceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHHHHHHhhccceEEeehh
Confidence 46899999999999999999997643333 5555555 3578999999999999999999999999999999755
No 87
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=97.76 E-value=3.2e-05 Score=69.97 Aligned_cols=77 Identities=13% Similarity=0.200 Sum_probs=69.7
Q ss_pred CccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecC---CCCcEEEEEEcChHHHHHHH-hhcCCeecceEEEEeeCC
Q 027228 3 QTRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREY---GQSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPAE 78 (226)
Q Consensus 3 ~~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~---~~~~~A~V~F~~~~aa~tAl-~Lng~~l~gr~I~V~~a~ 78 (226)
+++.+|+-.||-..++.+|-..|-.+|.|.+.++.-|+ ..++|+||.|.++.++.+|+ .|||-.|+=++|+|....
T Consensus 284 eGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQLKR 363 (371)
T KOG0146|consen 284 EGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKR 363 (371)
T ss_pred CcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhhhcC
Confidence 46899999999999999999999999999999999887 35789999999999999999 699999999999997554
Q ss_pred C
Q 027228 79 N 79 (226)
Q Consensus 79 ~ 79 (226)
.
T Consensus 364 P 364 (371)
T KOG0146|consen 364 P 364 (371)
T ss_pred c
Confidence 3
No 88
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.75 E-value=2.1e-05 Score=72.89 Aligned_cols=77 Identities=25% Similarity=0.368 Sum_probs=66.2
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeE--------EEEEecCC---CCcEEEEEEcChHHHHHHH-hhcCCeecceE
Q 027228 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIER--------IEILREYG---QSKTAFVTFKDAKALEIAL-LLSGATIVDQI 71 (226)
Q Consensus 4 ~~tV~V~NLs~~tTe~~L~efFs~cG~I~s--------I~i~~d~~---~~~~A~V~F~~~~aa~tAl-~Lng~~l~gr~ 71 (226)
.-||||-++|.++++++|-+||..||.|+. |.|.++.+ .++-|.|+|+|+.+++.|+ -+++..+.+..
T Consensus 66 ~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~gn~ 145 (351)
T KOG1995|consen 66 NETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCGNT 145 (351)
T ss_pred cccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccCCC
Confidence 468999999999999999999999999964 55555542 4679999999999999999 59999999999
Q ss_pred EEEeeCCCC
Q 027228 72 VSITPAENY 80 (226)
Q Consensus 72 I~V~~a~~~ 80 (226)
|+|..+...
T Consensus 146 ikvs~a~~r 154 (351)
T KOG1995|consen 146 IKVSLAERR 154 (351)
T ss_pred chhhhhhhc
Confidence 999876543
No 89
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.73 E-value=0.0002 Score=55.80 Aligned_cols=73 Identities=18% Similarity=0.219 Sum_probs=52.5
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEE-EEec---------CCCCcEEEEEEcChHHHHHHHhhcCCeecceEEE
Q 027228 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIE-ILRE---------YGQSKTAFVTFKDAKALEIALLLSGATIVDQIVS 73 (226)
Q Consensus 4 ~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~-i~~d---------~~~~~~A~V~F~~~~aa~tAl~Lng~~l~gr~I~ 73 (226)
.+.|.|=+.|+. .-..|.+.|+.||+|.... +.++ +.....-.|+|.++.+|.+||..||..|.|..+.
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~NG~i~~g~~mv 84 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQKNGTIFSGSLMV 84 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTTTTEEETTCEEE
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHhCCeEEcCcEEE
Confidence 467999999998 5567888999999997764 1111 1235699999999999999999999999997655
Q ss_pred -EeeC
Q 027228 74 -ITPA 77 (226)
Q Consensus 74 -V~~a 77 (226)
|.+.
T Consensus 85 GV~~~ 89 (100)
T PF05172_consen 85 GVKPC 89 (100)
T ss_dssp EEEE-
T ss_pred EEEEc
Confidence 5444
No 90
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=97.68 E-value=4.5e-05 Score=69.06 Aligned_cols=75 Identities=23% Similarity=0.355 Sum_probs=63.0
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecC--CCCcEEEEEEcChHHHHHHH-hhcCCe-ecc--eEEEEeeC
Q 027228 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREY--GQSKTAFVTFKDAKALEIAL-LLSGAT-IVD--QIVSITPA 77 (226)
Q Consensus 4 ~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~--~~~~~A~V~F~~~~aa~tAl-~Lng~~-l~g--r~I~V~~a 77 (226)
.|.+||+=|...-.|+|++.+|+.+|.|+++.+.+.. ..+|+|||.|.+..++..|+ .|.|.. +-| ..|.|.-+
T Consensus 19 drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK~A 98 (371)
T KOG0146|consen 19 DRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVKFA 98 (371)
T ss_pred chhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEEec
Confidence 4789999999999999999999999999999999876 35789999999999999999 588754 333 35666554
Q ss_pred C
Q 027228 78 E 78 (226)
Q Consensus 78 ~ 78 (226)
.
T Consensus 99 D 99 (371)
T KOG0146|consen 99 D 99 (371)
T ss_pred c
Confidence 3
No 91
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.49 E-value=0.00054 Score=52.19 Aligned_cols=68 Identities=16% Similarity=0.246 Sum_probs=46.6
Q ss_pred cEEEEeCCCCcccHHHHH----HHcccCC-ceeEEEEEecCCCCcEEEEEEcChHHHHHHH-hhcCCeecceEEEEeeCC
Q 027228 5 RTVQVKNVSDLAHEREIH----EFFSFSG-DIERIEILREYGQSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPAE 78 (226)
Q Consensus 5 ~tV~V~NLs~~tTe~~L~----efFs~cG-~I~sI~i~~d~~~~~~A~V~F~~~~aa~tAl-~Lng~~l~gr~I~V~~a~ 78 (226)
..++|.|||.+.....|+ .++..|| +|-+|. .+.|.|.|.+++.|..|+ .|+|-..-|+.|.|...+
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~-------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~~ 75 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS-------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFSP 75 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE---------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS-
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe-------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEcC
Confidence 368999999988777655 6677896 666652 579999999999999999 699999999999998764
Q ss_pred C
Q 027228 79 N 79 (226)
Q Consensus 79 ~ 79 (226)
.
T Consensus 76 ~ 76 (90)
T PF11608_consen 76 K 76 (90)
T ss_dssp -
T ss_pred C
Confidence 4
No 92
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=97.43 E-value=8.6e-05 Score=67.48 Aligned_cols=77 Identities=18% Similarity=0.226 Sum_probs=65.6
Q ss_pred cEEE-EeCCCCcccHHHHHHHcccCCceeEEEEEecCC---CCcEEEEEEcChHHHHHHHhhcCCeecceEEEEeeCCCC
Q 027228 5 RTVQ-VKNVSDLAHEREIHEFFSFSGDIERIEILREYG---QSKTAFVTFKDAKALEIALLLSGATIVDQIVSITPAENY 80 (226)
Q Consensus 5 ~tV~-V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~~---~~~~A~V~F~~~~aa~tAl~Lng~~l~gr~I~V~~a~~~ 80 (226)
.+++ |+|++..+++++|+++|.+||.|..+++..++. ..++|||.|.+......++..+...+.++++.+......
T Consensus 185 ~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (285)
T KOG4210|consen 185 DTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALNDQTRSIGGRPLRLEEDEPR 264 (285)
T ss_pred ccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhcccCcccCcccccccCCCC
Confidence 4666 999999999999999999999999999998874 358999999998888888765678888999999766544
Q ss_pred C
Q 027228 81 V 81 (226)
Q Consensus 81 ~ 81 (226)
.
T Consensus 265 ~ 265 (285)
T KOG4210|consen 265 P 265 (285)
T ss_pred c
Confidence 3
No 93
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=97.36 E-value=0.00014 Score=63.89 Aligned_cols=66 Identities=21% Similarity=0.373 Sum_probs=59.8
Q ss_pred cEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCCCCcEEEEEEcChHHHHHHH-hhcCCeecceEEEEe
Q 027228 5 RTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSIT 75 (226)
Q Consensus 5 ~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~~~~~~A~V~F~~~~aa~tAl-~Lng~~l~gr~I~V~ 75 (226)
+.+.|.|++..+.+.+|.+.|.+.|++....+ ...+++|.|+..+++..|+ +|+|..|.|+.|.+.
T Consensus 100 ~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~-----~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~~ 166 (216)
T KOG0106|consen 100 FRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA-----RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISVE 166 (216)
T ss_pred ceeeeccchhhhhHHHHhhhhcccCCCchhhh-----hccccceeehhhhhhhhcchhccchhhcCceeeec
Confidence 56889999999999999999999999976666 2558999999999999999 799999999999993
No 94
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=97.28 E-value=0.00024 Score=62.94 Aligned_cols=62 Identities=21% Similarity=0.310 Sum_probs=51.2
Q ss_pred cEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCCCCcEEEEEEcChHHHHHHH-hhcCCee
Q 027228 5 RTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIAL-LLSGATI 67 (226)
Q Consensus 5 ~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~~~~~~A~V~F~~~~aa~tAl-~Lng~~l 67 (226)
.|+||.||++++||++|+.+|+.+---..++|... +....||++|++-+-+-.|+ .|.|-.|
T Consensus 211 stlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~-~g~~vaf~~~~~~~~at~am~~lqg~~~ 273 (284)
T KOG1457|consen 211 STLFIANLGPNCTEDELKQLLSRYPGFHILKIRAR-GGMPVAFADFEEIEQATDAMNHLQGNLL 273 (284)
T ss_pred hhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecC-CCcceEeecHHHHHHHHHHHHHhhccee
Confidence 48999999999999999999997765566666443 44789999999999888888 6888665
No 95
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.17 E-value=0.00079 Score=62.76 Aligned_cols=71 Identities=17% Similarity=0.354 Sum_probs=58.8
Q ss_pred cEEEEeCCCCcccHHH------HHHHcccCCceeEEEEEecC---C-CCcE--EEEEEcChHHHHHHH-hhcCCeecceE
Q 027228 5 RTVQVKNVSDLAHERE------IHEFFSFSGDIERIEILREY---G-QSKT--AFVTFKDAKALEIAL-LLSGATIVDQI 71 (226)
Q Consensus 5 ~tV~V~NLs~~tTe~~------L~efFs~cG~I~sI~i~~d~---~-~~~~--A~V~F~~~~aa~tAl-~Lng~~l~gr~ 71 (226)
.-|||-+||+.+-.++ =.+||.++|+|..|-+-+.. + ..+. -||+|...++|.+++ ..+|+.++||.
T Consensus 115 NLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr~ 194 (480)
T COG5175 115 NLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGRV 194 (480)
T ss_pred ceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCce
Confidence 3589999999987776 25999999999999986543 1 1233 499999999999999 69999999999
Q ss_pred EEEe
Q 027228 72 VSIT 75 (226)
Q Consensus 72 I~V~ 75 (226)
|+.+
T Consensus 195 lkat 198 (480)
T COG5175 195 LKAT 198 (480)
T ss_pred Eeee
Confidence 9985
No 96
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=97.12 E-value=0.0039 Score=48.34 Aligned_cols=64 Identities=17% Similarity=0.282 Sum_probs=55.2
Q ss_pred cEEEEeCCCCcccHHHHHHHcc--cCCceeEEEEEecCC---CCcEEEEEEcChHHHHHHH-hhcCCeec
Q 027228 5 RTVQVKNVSDLAHEREIHEFFS--FSGDIERIEILREYG---QSKTAFVTFKDAKALEIAL-LLSGATIV 68 (226)
Q Consensus 5 ~tV~V~NLs~~tTe~~L~efFs--~cG~I~sI~i~~d~~---~~~~A~V~F~~~~aa~tAl-~Lng~~l~ 68 (226)
+||=+.|||...|.++|.+.+. +.|...-+.|+.|-. ..|+|||.|.+++.+..-. .++|..+.
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~ 71 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWP 71 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccc
Confidence 6899999999999999999886 468888999988863 3689999999999998876 69998775
No 97
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.08 E-value=0.00023 Score=63.83 Aligned_cols=66 Identities=20% Similarity=0.276 Sum_probs=56.6
Q ss_pred EEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCCC---------------CcEEEEEEcChHHHHH-HHhhcCCeecc
Q 027228 6 TVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYGQ---------------SKTAFVTFKDAKALEI-ALLLSGATIVD 69 (226)
Q Consensus 6 tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~~~---------------~~~A~V~F~~~~aa~t-Al~Lng~~l~g 69 (226)
-||++||||......|+++|+++|.|-+|.+.++... ..-+.|+|.+...|+. |.+|||+.|+|
T Consensus 76 VvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~Igg 155 (278)
T KOG3152|consen 76 VVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPIGG 155 (278)
T ss_pred EEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCccCC
Confidence 6999999999999999999999999999999876421 1257899999988876 45899999998
Q ss_pred eE
Q 027228 70 QI 71 (226)
Q Consensus 70 r~ 71 (226)
+.
T Consensus 156 kk 157 (278)
T KOG3152|consen 156 KK 157 (278)
T ss_pred CC
Confidence 74
No 98
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.06 E-value=0.0026 Score=52.75 Aligned_cols=69 Identities=25% Similarity=0.331 Sum_probs=52.9
Q ss_pred cEEEEeCCCC------cccH---HHHHHHcccCCceeEEEEEecCCCCcEEEEEEcChHHHHHHHhhcCCeecceEEEEe
Q 027228 5 RTVQVKNVSD------LAHE---REIHEFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIALLLSGATIVDQIVSIT 75 (226)
Q Consensus 5 ~tV~V~NLs~------~tTe---~~L~efFs~cG~I~sI~i~~d~~~~~~A~V~F~~~~aa~tAl~Lng~~l~gr~I~V~ 75 (226)
.||.|+=.++ ...+ .+|.+.|+.+|++.-|++..+ .-.|+|.+-++|-+||.|+|.++.|+.|+|+
T Consensus 28 aTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~~-----~mwVTF~dg~sALaals~dg~~v~g~~l~i~ 102 (146)
T PF08952_consen 28 ATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVGD-----TMWVTFRDGQSALAALSLDGIQVNGRTLKIR 102 (146)
T ss_dssp -EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEETT-----CEEEEESSCHHHHHHHHGCCSEETTEEEEEE
T ss_pred ceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeCC-----eEEEEECccHHHHHHHccCCcEECCEEEEEE
Confidence 4777776662 2222 367788999999998888744 6899999999999999999999999999999
Q ss_pred eCC
Q 027228 76 PAE 78 (226)
Q Consensus 76 ~a~ 78 (226)
...
T Consensus 103 LKt 105 (146)
T PF08952_consen 103 LKT 105 (146)
T ss_dssp E--
T ss_pred eCC
Confidence 753
No 99
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=97.01 E-value=0.0013 Score=66.10 Aligned_cols=74 Identities=20% Similarity=0.270 Sum_probs=64.0
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecC---C---CCcEEEEEEcChHHHHHHH-hhcCCeecceEEEEee
Q 027228 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREY---G---QSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITP 76 (226)
Q Consensus 4 ~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~---~---~~~~A~V~F~~~~aa~tAl-~Lng~~l~gr~I~V~~ 76 (226)
.+.+||+||+|+++|+.|..-|..+|+|-+++|.--. + ..-++||-|-+-.+++.|+ .|+|..+-+..+++-.
T Consensus 174 TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K~gW 253 (877)
T KOG0151|consen 174 TTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMKLGW 253 (877)
T ss_pred ccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeeeecc
Confidence 5689999999999999999999999999999986322 1 2458999999999999999 6999999998888854
Q ss_pred C
Q 027228 77 A 77 (226)
Q Consensus 77 a 77 (226)
.
T Consensus 254 g 254 (877)
T KOG0151|consen 254 G 254 (877)
T ss_pred c
Confidence 3
No 100
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=96.99 E-value=0.0034 Score=59.77 Aligned_cols=72 Identities=19% Similarity=0.413 Sum_probs=65.0
Q ss_pred cEEEEeCCCC-cccHHHHHHHcccCCceeEEEEEecCCCCcEEEEEEcChHHHHHHH-hhcCCeecceEEEEeeCC
Q 027228 5 RTVQVKNVSD-LAHEREIHEFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPAE 78 (226)
Q Consensus 5 ~tV~V~NLs~-~tTe~~L~efFs~cG~I~sI~i~~d~~~~~~A~V~F~~~~aa~tAl-~Lng~~l~gr~I~V~~a~ 78 (226)
..+-|+||.. .+|++-|..+|+-+|+|.+|.|.... +--|.|.+.|..-+.-|+ .|+|..|-|+.|+|+...
T Consensus 298 ~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nk--kd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SK 371 (492)
T KOG1190|consen 298 VVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNK--KDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSK 371 (492)
T ss_pred eEEEEecCchhccchhHHHHHHhhhcceEEEEeeecC--CcceeeeecchhHHHHHHHHhhcceecCceEEEeecc
Confidence 5788999985 58999999999999999999999875 357999999999999999 699999999999998654
No 101
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=96.86 E-value=0.00079 Score=64.16 Aligned_cols=65 Identities=20% Similarity=0.245 Sum_probs=54.6
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEec---CC-----C--------CcEEEEEEcChHHHHHHHhhcCCee
Q 027228 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILRE---YG-----Q--------SKTAFVTFKDAKALEIALLLSGATI 67 (226)
Q Consensus 4 ~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d---~~-----~--------~~~A~V~F~~~~aa~tAl~Lng~~l 67 (226)
++||.+.|||.+-.-+.|.++|+.||.|++|+|+.- ++ . .-.|+|+|+.-++|.+|-.|++..=
T Consensus 231 srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~e~ 310 (484)
T KOG1855|consen 231 SRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNPEQ 310 (484)
T ss_pred cceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhchhh
Confidence 689999999999888999999999999999999865 11 1 2379999999999999997665443
Q ss_pred c
Q 027228 68 V 68 (226)
Q Consensus 68 ~ 68 (226)
+
T Consensus 311 ~ 311 (484)
T KOG1855|consen 311 N 311 (484)
T ss_pred h
Confidence 3
No 102
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=96.85 E-value=0.0031 Score=63.39 Aligned_cols=71 Identities=24% Similarity=0.263 Sum_probs=61.2
Q ss_pred cEEEEeCCCCcccHHHHHHHcccCCce-eEEEEEecC--CCCcEEEEEEcChHHHHHHH-hhcCCeecceEEEEe
Q 027228 5 RTVQVKNVSDLAHEREIHEFFSFSGDI-ERIEILREY--GQSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSIT 75 (226)
Q Consensus 5 ~tV~V~NLs~~tTe~~L~efFs~cG~I-~sI~i~~d~--~~~~~A~V~F~~~~aa~tAl-~Lng~~l~gr~I~V~ 75 (226)
+.|.+.|+|++++-+||.+||+.+-.+ .+|.+.+.+ ..+|-|.|.|++.+.|..|. .|++..|..|.|.+.
T Consensus 868 ~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~ 942 (944)
T KOG4307|consen 868 RVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLR 942 (944)
T ss_pred eEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEE
Confidence 468899999999999999999988665 367776654 35789999999999999998 599999999999875
No 103
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=96.82 E-value=0.0011 Score=64.41 Aligned_cols=76 Identities=16% Similarity=0.264 Sum_probs=69.2
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCC---CCcEEEEEEcChHHHHHHH-hhcCCeecceEEEEeeCCC
Q 027228 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYG---QSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPAEN 79 (226)
Q Consensus 4 ~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~~---~~~~A~V~F~~~~aa~tAl-~Lng~~l~gr~I~V~~a~~ 79 (226)
...++|+|||...++++++|+...+|.+...++..+.. .++|||-+|.++.-...|+ -|||..++|+.|.|..+-.
T Consensus 289 ~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~ 368 (500)
T KOG0120|consen 289 PNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIV 368 (500)
T ss_pred cchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhc
Confidence 45799999999999999999999999999999998863 4789999999999999999 5999999999999987643
No 104
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=96.59 E-value=0.0082 Score=52.87 Aligned_cols=72 Identities=21% Similarity=0.289 Sum_probs=61.2
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCCCCcEEEEEEcChHHHHHHH-hhcCCeec-ceEEEEeeC
Q 027228 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIAL-LLSGATIV-DQIVSITPA 77 (226)
Q Consensus 4 ~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~~~~~~A~V~F~~~~aa~tAl-~Lng~~l~-gr~I~V~~a 77 (226)
..+.++.|||..++.+.+..+|..|.--+.|+++... ++.|||+|.+...+..|. .|.|..|- ...+.|+.+
T Consensus 146 n~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~--~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a 219 (221)
T KOG4206|consen 146 NNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPR--SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFA 219 (221)
T ss_pred ceEEEEecCCcchhHHHHHHHHhhCcccceeEeccCC--CceeEEecchhhhhHHHhhhhccceeccCceEEeccc
Confidence 4689999999999999999999998888999998653 679999999998888888 58888876 667777654
No 105
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=96.44 E-value=0.0077 Score=58.55 Aligned_cols=56 Identities=20% Similarity=0.304 Sum_probs=44.6
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCC------CCc---EEEEEEcChHHHHHHH
Q 027228 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYG------QSK---TAFVTFKDAKALEIAL 60 (226)
Q Consensus 4 ~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~~------~~~---~A~V~F~~~~aa~tAl 60 (226)
++.|||++|||..+|+.|...|..||.+ .|+.....+ +.| ++|..|+++.++..-|
T Consensus 259 S~KVFvGGlp~dise~~i~~~F~~FGs~-~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll 323 (520)
T KOG0129|consen 259 SRKVFVGGLPWDITEAQINASFGQFGSV-KVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLL 323 (520)
T ss_pred ccceeecCCCccccHHHHHhhcccccce-EeecCCCccccccCCCCCcccEEEEEecchHHHHHHH
Confidence 4689999999999999999999999995 455553221 234 9999999998877544
No 106
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=96.29 E-value=0.025 Score=52.90 Aligned_cols=77 Identities=13% Similarity=0.216 Sum_probs=61.4
Q ss_pred CccEEEEeCCCC----ccc-------HHHHHHHcccCCceeEEEEEecCCCCcEEEEEEcChHHHHHHH-hhcCCeecce
Q 027228 3 QTRTVQVKNVSD----LAH-------EREIHEFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIAL-LLSGATIVDQ 70 (226)
Q Consensus 3 ~~~tV~V~NLs~----~tT-------e~~L~efFs~cG~I~sI~i~~d~~~~~~A~V~F~~~~aa~tAl-~Lng~~l~gr 70 (226)
..+||.+.|+=. ..+ +++|++==+.||.|.+|.+... .+-|.+.|.|.+++.|..++ .|+|.-|+||
T Consensus 264 ~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d~-hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgR 342 (382)
T KOG1548|consen 264 ADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYDR-HPDGVVTVSFRNNEEADQCIQTMDGRWFDGR 342 (382)
T ss_pred CCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEecc-CCCceeEEEeCChHHHHHHHHHhcCeeecce
Confidence 357999999853 344 3444455678999999998744 35789999999999999999 7999999999
Q ss_pred EEEEeeCCCC
Q 027228 71 IVSITPAENY 80 (226)
Q Consensus 71 ~I~V~~a~~~ 80 (226)
.|.-..+.+.
T Consensus 343 ql~A~i~DG~ 352 (382)
T KOG1548|consen 343 QLTASIWDGK 352 (382)
T ss_pred EEEEEEeCCc
Confidence 9999877543
No 107
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=96.14 E-value=0.0064 Score=57.63 Aligned_cols=70 Identities=20% Similarity=0.253 Sum_probs=57.1
Q ss_pred EEEEeCCCCcccHHHHHHHccc-C---CceeEEEEEec--CCCCcEEEEEEcChHHHHHHHhhcCCeecceEEEEe
Q 027228 6 TVQVKNVSDLAHEREIHEFFSF-S---GDIERIEILRE--YGQSKTAFVTFKDAKALEIALLLSGATIVDQIVSIT 75 (226)
Q Consensus 6 tV~V~NLs~~tTe~~L~efFs~-c---G~I~sI~i~~d--~~~~~~A~V~F~~~~aa~tAl~Lng~~l~gr~I~V~ 75 (226)
-|...+||+++|+.+|.+||.. | |..+.|-++.. +..+|-|||.|..++.+..||.-+...|+-|.|.+-
T Consensus 163 ivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~khrq~iGqRYIElF 238 (508)
T KOG1365|consen 163 IVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALRKHRQNIGQRYIELF 238 (508)
T ss_pred EEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHHHHHHHHhHHHHHHH
Confidence 4667799999999999999972 2 34556666554 345899999999999999999999888888888774
No 108
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=96.13 E-value=0.013 Score=57.11 Aligned_cols=74 Identities=23% Similarity=0.222 Sum_probs=64.2
Q ss_pred ccEEEEeCCCCcccHHHHHHHcc-cCCceeEEEEEecCC---CCcEEEEEEcChHHHHHHH-----hhcCCeecceEEEE
Q 027228 4 TRTVQVKNVSDLAHEREIHEFFS-FSGDIERIEILREYG---QSKTAFVTFKDAKALEIAL-----LLSGATIVDQIVSI 74 (226)
Q Consensus 4 ~~tV~V~NLs~~tTe~~L~efFs-~cG~I~sI~i~~d~~---~~~~A~V~F~~~~aa~tAl-----~Lng~~l~gr~I~V 74 (226)
.+||||++||--.+-.+|-.+|. .+|.|..+-|-.|++ +.|-+-|+|.+.++.-+|+ .|+.+.|+- .|.|
T Consensus 370 rrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsarFvql~h~d~~K-RVEI 448 (520)
T KOG0129|consen 370 RRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISARFVQLDHTDIDK-RVEI 448 (520)
T ss_pred cceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhhheEEEeccccce-eeee
Confidence 58999999999999999999999 689999999988863 5789999999999988887 377777765 7888
Q ss_pred eeCC
Q 027228 75 TPAE 78 (226)
Q Consensus 75 ~~a~ 78 (226)
.|+-
T Consensus 449 kPYv 452 (520)
T KOG0129|consen 449 KPYV 452 (520)
T ss_pred ccee
Confidence 7764
No 109
>PLN03120 nucleic acid binding protein; Provisional
Probab=95.94 E-value=0.0045 Score=55.81 Aligned_cols=62 Identities=23% Similarity=0.342 Sum_probs=47.2
Q ss_pred ccccHHHHHHHHHhhhhcCccHHHH-------HHHhhhhhccCcccccccchhhHhHhhhh-----cccccccc
Q 027228 133 SAIRQEAVNKAKAFDEKHQFTANAS-------AKVISFDRRVGFTEKLTVGISVVNEKVKS-----VDQRLHVS 194 (226)
Q Consensus 133 yvl~d~ai~kA~~fDekh~iss~~~-------~~v~~lD~k~g~t~k~~~g~~~v~~k~k~-----vD~~~~vs 194 (226)
.-|+-.+..+...||+|+|+|.++. .++.++|+|||+|||.....+++-+++-. +..+|=.+
T Consensus 135 H~~ss~a~a~v~~~d~k~gltek~~~g~~~v~~~~k~vDeky~vs~kt~sa~~~~~~~~~~a~sai~~~~y~~~ 208 (260)
T PLN03120 135 HQLTSTASAKVASLDKKIGLSEKLSAGTAVVNEKVKEVDQKYQVSEKTKSALAAAEQKVSSAGSAIMKNRYVLT 208 (260)
T ss_pred hchHHHHHHHHHhhhhhcCcccccccchHHHHHHHHhhhhhhchhHHHHHHHHHHHHHHHHHHHHHhcCccccc
Confidence 3456778889999999999999865 78999999999999987776665554432 45555433
No 110
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=95.93 E-value=0.017 Score=55.12 Aligned_cols=71 Identities=14% Similarity=0.248 Sum_probs=57.5
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCce-eEEEEEecCCCCcEEEEEEcChHHHHHHH-hhcCCeecce-EEEEee
Q 027228 4 TRTVQVKNVSDLAHEREIHEFFSFSGDI-ERIEILREYGQSKTAFVTFKDAKALEIAL-LLSGATIVDQ-IVSITP 76 (226)
Q Consensus 4 ~~tV~V~NLs~~tTe~~L~efFs~cG~I-~sI~i~~d~~~~~~A~V~F~~~~aa~tAl-~Lng~~l~gr-~I~V~~ 76 (226)
+.|++.+|||++++|+++++.|..-|-. +-..... +..+.|.+.+++.+.+-.|| .+.+..+++. .++|+-
T Consensus 414 satlHlsnip~svsee~lk~~f~~~g~~vkafkff~--kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSF 487 (492)
T KOG1190|consen 414 SATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFFQ--KDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSF 487 (492)
T ss_pred hhheeeccCCcccchhHHHHhhhcCCceEEeeeecC--CCcceeecccCChhHhhhhccccccccCCCCceEEEEe
Confidence 4589999999999999999999987765 3333332 23689999999999999998 6888888876 788864
No 111
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=95.86 E-value=0.01 Score=56.34 Aligned_cols=75 Identities=16% Similarity=0.232 Sum_probs=61.8
Q ss_pred cEEEEeCCCCcccHHHHHHHcccCC-ceeE--EEEEecC--CCCcEEEEEEcChHHHHHHH-hhcCCeecceEEEEeeCC
Q 027228 5 RTVQVKNVSDLAHEREIHEFFSFSG-DIER--IEILREY--GQSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPAE 78 (226)
Q Consensus 5 ~tV~V~NLs~~tTe~~L~efFs~cG-~I~s--I~i~~d~--~~~~~A~V~F~~~~aa~tAl-~Lng~~l~gr~I~V~~a~ 78 (226)
.+|...+||+.++.+||.+||..+. .|.. |.|.-+. .++|-|||.|.+++.+..|. ...++...+|.|.|-+++
T Consensus 281 dcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~S 360 (508)
T KOG1365|consen 281 DCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNGQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPCS 360 (508)
T ss_pred CeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcCCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeecc
Confidence 4899999999999999999998654 4555 7777765 45899999999999999887 566666679999998775
Q ss_pred C
Q 027228 79 N 79 (226)
Q Consensus 79 ~ 79 (226)
.
T Consensus 361 ~ 361 (508)
T KOG1365|consen 361 V 361 (508)
T ss_pred H
Confidence 3
No 112
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=95.49 E-value=0.0015 Score=66.58 Aligned_cols=71 Identities=25% Similarity=0.342 Sum_probs=55.7
Q ss_pred cEEEEeCCCCcccHHHHHHHcccCCceeEEEEE--ecC-CCCcEEEEEEcChHHHHHHHhhcCCeecce-EEEEe
Q 027228 5 RTVQVKNVSDLAHEREIHEFFSFSGDIERIEIL--REY-GQSKTAFVTFKDAKALEIALLLSGATIVDQ-IVSIT 75 (226)
Q Consensus 5 ~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~--~d~-~~~~~A~V~F~~~~aa~tAl~Lng~~l~gr-~I~V~ 75 (226)
.++||+||++.+.+.+|+++|++.|.|+.+++. .+. ...|.|||.|.+++.+..|+.++...+.|+ .+.|.
T Consensus 668 ~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~gK~~v~i~ 742 (881)
T KOG0128|consen 668 IKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFGKISVAIS 742 (881)
T ss_pred HHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhhhhhhhee
Confidence 478999999999999999999998888877775 222 347899999999999999996555544444 44443
No 113
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=95.21 E-value=0.053 Score=53.02 Aligned_cols=59 Identities=20% Similarity=0.309 Sum_probs=48.5
Q ss_pred HHHHHcccCCceeEEEEEec-CC-----CCcEEEEEEcChHHHHHHH-hhcCCeecceEEEEeeCC
Q 027228 20 EIHEFFSFSGDIERIEILRE-YG-----QSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPAE 78 (226)
Q Consensus 20 ~L~efFs~cG~I~sI~i~~d-~~-----~~~~A~V~F~~~~aa~tAl-~Lng~~l~gr~I~V~~a~ 78 (226)
+|+.=++.+|.|.+|.+.++ .. ..|.-||+|.+.++.+.|+ .|+|..|.||.|...-++
T Consensus 425 dvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYyd 490 (500)
T KOG0120|consen 425 DVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYD 490 (500)
T ss_pred HHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecC
Confidence 44455667889999999987 31 3678999999999999999 699999999998876543
No 114
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=95.20 E-value=0.09 Score=37.66 Aligned_cols=52 Identities=27% Similarity=0.402 Sum_probs=43.3
Q ss_pred cEEEEeCCCCcccHHHHHHHcccC---CceeEEEEEecCCCCcEEEEEEcChHHHHHHHh
Q 027228 5 RTVQVKNVSDLAHEREIHEFFSFS---GDIERIEILREYGQSKTAFVTFKDAKALEIALL 61 (226)
Q Consensus 5 ~tV~V~NLs~~tTe~~L~efFs~c---G~I~sI~i~~d~~~~~~A~V~F~~~~aa~tAl~ 61 (226)
..|+|.++.. .+.++|+.||..+ ....+|+.+.|. .|-|.|.+++.+..||.
T Consensus 6 eavhirGvd~-lsT~dI~~y~~~y~~~~~~~~IEWIdDt----ScNvvf~d~~~A~~AL~ 60 (62)
T PF10309_consen 6 EAVHIRGVDE-LSTDDIKAYFSEYFDEEGPFRIEWIDDT----SCNVVFKDEETAARALV 60 (62)
T ss_pred ceEEEEcCCC-CCHHHHHHHHHHhcccCCCceEEEecCC----cEEEEECCHHHHHHHHH
Confidence 4799999854 7778999999976 234799999776 69999999999999984
No 115
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=95.12 E-value=0.026 Score=50.92 Aligned_cols=73 Identities=11% Similarity=0.238 Sum_probs=62.0
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecC---CCCcEEEEEEcChHHHHHHH-hhcCCeecceEEEEee
Q 027228 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREY---GQSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITP 76 (226)
Q Consensus 4 ~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~---~~~~~A~V~F~~~~aa~tAl-~Lng~~l~gr~I~V~~ 76 (226)
...||.+.|...++.+.|-.-|..+=.-..-+++++. ...+|+||.|.++.++..|+ .+||.-++.|.|....
T Consensus 190 DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRk 266 (290)
T KOG0226|consen 190 DFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRK 266 (290)
T ss_pred cceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhh
Confidence 3579999999999999999999876655566666665 34689999999999999999 6999999999988864
No 116
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=95.09 E-value=0.1 Score=49.54 Aligned_cols=73 Identities=19% Similarity=0.327 Sum_probs=63.0
Q ss_pred ccEEEEeCCCC-cccHHHHHHHcccCCceeEEEEEecCCCCcEEEEEEcChHHHHHHH-hhcCCeecceEEEEeeCC
Q 027228 4 TRTVQVKNVSD-LAHEREIHEFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPAE 78 (226)
Q Consensus 4 ~~tV~V~NLs~-~tTe~~L~efFs~cG~I~sI~i~~d~~~~~~A~V~F~~~~aa~tAl-~Lng~~l~gr~I~V~~a~ 78 (226)
+.-+-|.+|.. +...+.|-.+|-.+|.|++|.+++.. .+.|.|++-|+.+++.|+ .|||..+-|..|.|....
T Consensus 287 g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk--~gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~Sk 361 (494)
T KOG1456|consen 287 GCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK--PGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCVSK 361 (494)
T ss_pred CcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc--cceeEEEcCcHHHHHHHHHHhccCccccceEEEeecc
Confidence 34567888885 56888899999999999999998764 679999999999999999 699999999999987654
No 117
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=95.04 E-value=0.054 Score=49.95 Aligned_cols=60 Identities=22% Similarity=0.205 Sum_probs=50.3
Q ss_pred HHHHHHHcccCCceeEEEEEecCC----CCcEEEEEEcChHHHHHHH-hhcCCeecceEEEEeeC
Q 027228 18 EREIHEFFSFSGDIERIEILREYG----QSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPA 77 (226)
Q Consensus 18 e~~L~efFs~cG~I~sI~i~~d~~----~~~~A~V~F~~~~aa~tAl-~Lng~~l~gr~I~V~~a 77 (226)
|+++++--..||+|..|.|...++ ..---||+|+..+++-+|+ .|||..|+||.+.-+-+
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fy 364 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFY 364 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheec
Confidence 567778888999999999987763 2346899999999999998 79999999999877644
No 118
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=94.99 E-value=0.042 Score=54.30 Aligned_cols=75 Identities=17% Similarity=0.229 Sum_probs=58.1
Q ss_pred cEEEEeCCCC--ccc----HHHHHHHcccCCceeEEEEEecC--CCCcEEEEEEcChHHHHHHH-hhcCCeecce-EEEE
Q 027228 5 RTVQVKNVSD--LAH----EREIHEFFSFSGDIERIEILREY--GQSKTAFVTFKDAKALEIAL-LLSGATIVDQ-IVSI 74 (226)
Q Consensus 5 ~tV~V~NLs~--~tT----e~~L~efFs~cG~I~sI~i~~d~--~~~~~A~V~F~~~~aa~tAl-~Lng~~l~gr-~I~V 74 (226)
..|.|-|+|- ... ..-|..+|+.+|+|..+.++.+. +..|+.|++|++..+|+.|+ .|||..|+-+ ...|
T Consensus 59 ~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf~v 138 (698)
T KOG2314|consen 59 SVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTFFV 138 (698)
T ss_pred eEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccceEEe
Confidence 4688888874 222 23355889999999999999665 45789999999999999999 5999999865 5666
Q ss_pred eeCCC
Q 027228 75 TPAEN 79 (226)
Q Consensus 75 ~~a~~ 79 (226)
..-.+
T Consensus 139 ~~f~d 143 (698)
T KOG2314|consen 139 RLFKD 143 (698)
T ss_pred ehhhh
Confidence 54433
No 119
>PLN03121 nucleic acid binding protein; Provisional
Probab=94.95 E-value=0.017 Score=51.59 Aligned_cols=50 Identities=14% Similarity=0.148 Sum_probs=41.4
Q ss_pred ccccccHHHHHHHHHhhhhcCccHHHH---HHHhhhhhccCcccccccchhhH
Q 027228 131 RGSAIRQEAVNKAKAFDEKHQFTANAS---AKVISFDRRVGFTEKLTVGISVV 180 (226)
Q Consensus 131 ~Gyvl~d~ai~kA~~fDekh~iss~~~---~~v~~lD~k~g~t~k~~~g~~~v 180 (226)
.-+-|+-.|-.|.-+||+|.|||.++. ..|.++|+|||++|+-.+..++.
T Consensus 146 E~h~lss~a~a~v~~~d~~iglt~k~~~g~~~vk~vDeky~vs~~tksA~~aa 198 (243)
T PLN03121 146 ESHQVSATAAAKVAELSKRIGLTDKIFAGMEAVRSVDEKYHVSEFTKSAATAT 198 (243)
T ss_pred HhcCccHhhhhhhhhhhhhccchhhhhhhHHHHHhhhhhhhhHHHHHHHHHHH
Confidence 345688899999999999999999995 77899999999998765444333
No 120
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=94.92 E-value=0.045 Score=55.32 Aligned_cols=69 Identities=22% Similarity=0.334 Sum_probs=56.7
Q ss_pred EEEEeCCCCcccHHHHHHHcccCCcee--EEEEEecCCCCcEEEEEEcChHHHHHHHhhcCCeecceEEEEeeC
Q 027228 6 TVQVKNVSDLAHEREIHEFFSFSGDIE--RIEILREYGQSKTAFVTFKDAKALEIALLLSGATIVDQIVSITPA 77 (226)
Q Consensus 6 tV~V~NLs~~tTe~~L~efFs~cG~I~--sI~i~~d~~~~~~A~V~F~~~~aa~tAl~Lng~~l~gr~I~V~~a 77 (226)
-|...|||+.+.-.|||.|||-. +|- -|.|+. +.-|-|||.|.+.++|.-|++-++.+|.|..|+.-..
T Consensus 4 IIRLqnLP~tAga~DIR~FFSGL-~IPdGgVHIIG--Ge~GeaFI~FsTDeDARlaM~kdr~~i~g~~VrLlLS 74 (944)
T KOG4307|consen 4 IIRLQNLPMTAGASDIRTFFSGL-KIPDGGVHIIG--GEEGEAFIGFSTDEDARLAMTKDRLMIHGAEVRLLLS 74 (944)
T ss_pred EEEecCCcccccchHHHHhhccc-ccCCCceEEec--ccccceEEEecccchhhhhhhhcccceecceEEEEec
Confidence 67788999999999999999965 342 244442 2367899999999999999999999999998887543
No 121
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=94.82 E-value=0.079 Score=46.11 Aligned_cols=60 Identities=13% Similarity=0.219 Sum_probs=54.5
Q ss_pred cEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCCCCcEEEEEEcChHHHHHHH-hhcCCeec
Q 027228 5 RTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIAL-LLSGATIV 68 (226)
Q Consensus 5 ~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~~~~~~A~V~F~~~~aa~tAl-~Lng~~l~ 68 (226)
..|.|++||++.+++||++..-..|.|-..++.+|. ++.|+|-..++.+-|+ .|+.+.+.
T Consensus 116 ~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rDg----~GvV~~~r~eDMkYAvr~ld~~~~~ 176 (241)
T KOG0105|consen 116 YRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRDG----VGVVEYLRKEDMKYAVRKLDDQKFR 176 (241)
T ss_pred eeEEEecCCCCCchHHHHHHHHhhCCeeeeeeeccc----ceeeeeeehhhHHHHHHhhcccccc
Confidence 579999999999999999999999999999998775 8999999999999999 58877664
No 122
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=94.39 E-value=0.022 Score=51.23 Aligned_cols=63 Identities=16% Similarity=0.214 Sum_probs=51.1
Q ss_pred HHHHHHcc-cCCceeEEEEEecCC--CCcEEEEEEcChHHHHHHH-hhcCCeecceEEEEeeCCCCC
Q 027228 19 REIHEFFS-FSGDIERIEILREYG--QSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPAENYV 81 (226)
Q Consensus 19 ~~L~efFs-~cG~I~sI~i~~d~~--~~~~A~V~F~~~~aa~tAl-~Lng~~l~gr~I~V~~a~~~~ 81 (226)
++|...|+ .+|+|+.+.+..+.+ -.|-+||.|..+++++.|+ .|||.-+.|++|.-...+...
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pvT~ 149 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPVTD 149 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCcCc
Confidence 44555555 799999998877653 3688999999999999999 799999999999988765443
No 123
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=93.51 E-value=0.25 Score=45.71 Aligned_cols=70 Identities=14% Similarity=0.203 Sum_probs=55.9
Q ss_pred EEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCCCCcEEEEEEcChHHHHHHHhhcCCeecceE-EEEeeCCC
Q 027228 6 TVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIALLLSGATIVDQI-VSITPAEN 79 (226)
Q Consensus 6 tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~~~~~~A~V~F~~~~aa~tAl~Lng~~l~gr~-I~V~~a~~ 79 (226)
=|.|-+.|+... .-|...|+.||+|........ .-+-+|.|.+...+.+||-.||+.|+|.. |=|.++-+
T Consensus 199 WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~~n---gNwMhirYssr~~A~KALskng~ii~g~vmiGVkpCtD 269 (350)
T KOG4285|consen 199 WVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTPSN---GNWMHIRYSSRTHAQKALSKNGTIIDGDVMIGVKPCTD 269 (350)
T ss_pred eEEEeccCccch-hHHHHHHHhhCeeeeeecCCC---CceEEEEecchhHHHHhhhhcCeeeccceEEeeeecCC
Confidence 366778887654 457778999999988777633 45999999999999999999999999874 66777654
No 124
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=93.46 E-value=0.15 Score=43.28 Aligned_cols=67 Identities=19% Similarity=0.140 Sum_probs=44.2
Q ss_pred ccEEEEeCCCCcccHHHHHHHccc-CCce---eEEEEEecC-----CCCcEEEEEEcChHHHHHHH-hhcCCeecce
Q 027228 4 TRTVQVKNVSDLAHEREIHEFFSF-SGDI---ERIEILREY-----GQSKTAFVTFKDAKALEIAL-LLSGATIVDQ 70 (226)
Q Consensus 4 ~~tV~V~NLs~~tTe~~L~efFs~-cG~I---~sI~i~~d~-----~~~~~A~V~F~~~~aa~tAl-~Lng~~l~gr 70 (226)
...|.|.+|||..||+++.+-.+. .|.- .++.-.... .....|||.|.+.+.+..-. .++|..|.+.
T Consensus 7 ~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~ 83 (176)
T PF03467_consen 7 GTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDS 83 (176)
T ss_dssp --EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-T
T ss_pred CceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECC
Confidence 468999999999999998887765 6665 344322221 12468999999999977766 6999887654
No 125
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=92.73 E-value=0.14 Score=46.35 Aligned_cols=77 Identities=21% Similarity=0.176 Sum_probs=63.2
Q ss_pred cEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecC--CCCcEEEEEEcChHHHHHHHh-hc----CCeecceEEEEeeC
Q 027228 5 RTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREY--GQSKTAFVTFKDAKALEIALL-LS----GATIVDQIVSITPA 77 (226)
Q Consensus 5 ~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~--~~~~~A~V~F~~~~aa~tAl~-Ln----g~~l~gr~I~V~~a 77 (226)
..++|.||++.++-+.+++-|+.+|+|++--++-|. ..++-..|.|...-.+..|+. ++ +.+..+++..|.|.
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP~ 111 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEPM 111 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCChh
Confidence 579999999999999999999999999987777665 357899999999999999984 32 24566788888876
Q ss_pred CCCC
Q 027228 78 ENYV 81 (226)
Q Consensus 78 ~~~~ 81 (226)
....
T Consensus 112 eq~~ 115 (275)
T KOG0115|consen 112 EQPD 115 (275)
T ss_pred hccC
Confidence 5443
No 126
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=92.70 E-value=0.024 Score=58.34 Aligned_cols=71 Identities=30% Similarity=0.309 Sum_probs=60.7
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecC--CCCcEEEEEEcChHHHHHHH-hhcCCeecceEEEE
Q 027228 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREY--GQSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSI 74 (226)
Q Consensus 4 ~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~--~~~~~A~V~F~~~~aa~tAl-~Lng~~l~gr~I~V 74 (226)
++|+|++|++...++.+|+..|...|+|+.|.|-.-. ....++||.|.+-..+..|. .+.|..|....+.+
T Consensus 372 trTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~ 445 (975)
T KOG0112|consen 372 TRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRI 445 (975)
T ss_pred hhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCcccc
Confidence 5799999999999999999999999999999997653 23679999999999998887 68888776555444
No 127
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=92.67 E-value=0.13 Score=48.47 Aligned_cols=73 Identities=12% Similarity=0.161 Sum_probs=59.7
Q ss_pred cEEEEeCCCCcccHHHHHHHcccCCc--eeEEEEEecC---CCCcEEEEEEcChHHHHHHH-hhcCCeecceEEEEeeC
Q 027228 5 RTVQVKNVSDLAHEREIHEFFSFSGD--IERIEILREY---GQSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPA 77 (226)
Q Consensus 5 ~tV~V~NLs~~tTe~~L~efFs~cG~--I~sI~i~~d~---~~~~~A~V~F~~~~aa~tAl-~Lng~~l~gr~I~V~~a 77 (226)
.+.||+||-|.+|++||.+-....|- |..+++..++ ..+|||.|..-+..+++.-+ +|--.+|.|+.-.|.++
T Consensus 81 ~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~~ 159 (498)
T KOG4849|consen 81 YCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLSY 159 (498)
T ss_pred EEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeecc
Confidence 58999999999999999998887663 4555555443 45789999999998888888 68899999998888754
No 128
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=92.61 E-value=0.46 Score=39.79 Aligned_cols=66 Identities=18% Similarity=0.227 Sum_probs=50.8
Q ss_pred cEEEEe----CCCCcccHHHHHHHcccCCceeEEEEEecCCCCcEEEEEEcChHHHHHHHhhcCCeecceEEEE
Q 027228 5 RTVQVK----NVSDLAHEREIHEFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIALLLSGATIVDQIVSI 74 (226)
Q Consensus 5 ~tV~V~----NLs~~tTe~~L~efFs~cG~I~sI~i~~d~~~~~~A~V~F~~~~aa~tAl~Lng~~l~gr~I~V 74 (226)
.||.|. |+.+.-+-+.|-...+-+|+|.+|.+.. .+.|.|+|+|-.+|-.|+.--+...-|.-+..
T Consensus 87 sTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cG----rqsavVvF~d~~SAC~Av~Af~s~~pgtm~qC 156 (166)
T PF15023_consen 87 STIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCG----RQSAVVVFKDITSACKAVSAFQSRAPGTMFQC 156 (166)
T ss_pred eeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecC----CceEEEEehhhHHHHHHHHhhcCCCCCceEEe
Confidence 477775 7777777778888899999999999973 45899999999999999954444444544444
No 129
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=92.34 E-value=0.86 Score=34.77 Aligned_cols=50 Identities=16% Similarity=0.311 Sum_probs=38.4
Q ss_pred EEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCCCCcEEEEEEcChHHHHHHHh
Q 027228 6 TVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIALL 61 (226)
Q Consensus 6 tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~~~~~~A~V~F~~~~aa~tAl~ 61 (226)
..+|+ .|...-..||.++|+.||.| +|..+.|. .|||...+.+.+..++.
T Consensus 11 VFhlt-FPkeWK~~DI~qlFspfG~I-~VsWi~dT----SAfV~l~~r~~~~~v~~ 60 (87)
T PF08675_consen 11 VFHLT-FPKEWKTSDIYQLFSPFGQI-YVSWINDT----SAFVALHNRDQAKVVMN 60 (87)
T ss_dssp EEEEE---TT--HHHHHHHCCCCCCE-EEEEECTT----EEEEEECCCHHHHHHHH
T ss_pred EEEEe-CchHhhhhhHHHHhccCCcE-EEEEEcCC----cEEEEeecHHHHHHHHH
Confidence 45565 99999999999999999997 56666554 79999999999999884
No 130
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=92.04 E-value=1.1 Score=35.35 Aligned_cols=64 Identities=17% Similarity=0.210 Sum_probs=47.4
Q ss_pred EEEEe-CCCCcccHHHHHHHccc-CCceeEEEEEecCCCCc-EEEEEEcChHHHHHHH-hhcCCeecc
Q 027228 6 TVQVK-NVSDLAHEREIHEFFSF-SGDIERIEILREYGQSK-TAFVTFKDAKALEIAL-LLSGATIVD 69 (226)
Q Consensus 6 tV~V~-NLs~~tTe~~L~efFs~-cG~I~sI~i~~d~~~~~-~A~V~F~~~~aa~tAl-~Lng~~l~g 69 (226)
++.+- ..|+.++-++|..|.+. ...|.+++|++++.+.+ -+.+.|.+..+|..=. .+||..+..
T Consensus 14 ~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 14 TLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred eEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 34444 44455566677766664 46799999999986555 5888999999998876 699998764
No 131
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=90.93 E-value=1.1 Score=42.80 Aligned_cols=69 Identities=22% Similarity=0.210 Sum_probs=56.4
Q ss_pred EEeCCCCcccHHHHHHHcccCCceeEEEEEecCCCCcEEEEEEcChHHHHHHH-hhcCCeec--ceEEEEeeCC
Q 027228 8 QVKNVSDLAHEREIHEFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIAL-LLSGATIV--DQIVSITPAE 78 (226)
Q Consensus 8 ~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~~~~~~A~V~F~~~~aa~tAl-~Lng~~l~--gr~I~V~~a~ 78 (226)
-|-|--+.+|-+-|...-..||+|.+|-|.+.. .-.|.|+|++-+.|.+|- .|||+.|- ...|+|+-+.
T Consensus 126 TIlNp~YpItvDVly~Icnp~GkVlRIvIfkkn--gVQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIeyAk 197 (494)
T KOG1456|consen 126 TILNPQYPITVDVLYTICNPQGKVLRIVIFKKN--GVQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIEYAK 197 (494)
T ss_pred EeecCccccchhhhhhhcCCCCceEEEEEEecc--ceeeEEeechhHHHHHHHhhcccccccccceeEEEEecC
Confidence 344656678999999999999999999998763 447999999999999998 69999883 4577776543
No 132
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=90.85 E-value=0.12 Score=53.21 Aligned_cols=72 Identities=10% Similarity=0.093 Sum_probs=62.9
Q ss_pred cEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecC--CCCcEEEEEEcChHHHHHHH-hhcCCeecceEEEEee
Q 027228 5 RTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREY--GQSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITP 76 (226)
Q Consensus 5 ~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~--~~~~~A~V~F~~~~aa~tAl-~Lng~~l~gr~I~V~~ 76 (226)
..|+|+|.|+..|.++++.+|+..|.+++++++... .+.|.|+|.|.++..+..++ ..++..+.-+.+.|..
T Consensus 737 ~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~v 811 (881)
T KOG0128|consen 737 ISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQV 811 (881)
T ss_pred hhhheeCCCCCCchHHHHhhccccCCccccchhhhhccccccceeccCCCcchhhhhcccchhhhhhhcCccccc
Confidence 468999999999999999999999999999987665 45789999999999999998 5888888777666654
No 133
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=90.12 E-value=0.14 Score=51.32 Aligned_cols=68 Identities=25% Similarity=0.128 Sum_probs=59.9
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCCCCcEEEEEEcChHHHHHHH-hhcCCeecceEEEEeeC
Q 027228 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPA 77 (226)
Q Consensus 4 ~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~~~~~~A~V~F~~~~aa~tAl-~Lng~~l~gr~I~V~~a 77 (226)
..+|||+||...+..+-++-...+||-|.+.... .|+|..|.++.+.-.|+ +|+-..++|..+.+.+.
T Consensus 40 ~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~------~fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~d 108 (668)
T KOG2253|consen 40 RDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRD------KFGFCEFLKHIGDLRASRLLTELNIDDQKLIENVD 108 (668)
T ss_pred CceeEecchhhhhhHHHHHHHHhhCCcchhhhhh------hhcccchhhHHHHHHHHHHhcccCCCcchhhccch
Confidence 4699999999999999999999999999887653 39999999999988888 68888899998888764
No 134
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=89.81 E-value=0.14 Score=47.69 Aligned_cols=72 Identities=15% Similarity=0.240 Sum_probs=57.0
Q ss_pred EEEEeCCCCccc-HHHHH--HHcccCCceeEEEEEecC------CCCcEEEEEEcChHHHHHHH-hhcCCeecceEEEEe
Q 027228 6 TVQVKNVSDLAH-EREIH--EFFSFSGDIERIEILREY------GQSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSIT 75 (226)
Q Consensus 6 tV~V~NLs~~tT-e~~L~--efFs~cG~I~sI~i~~d~------~~~~~A~V~F~~~~aa~tAl-~Lng~~l~gr~I~V~ 75 (226)
-|||-+|++..- |..|+ ++|..+|+|.+|.+.++. +....+||+|+..+.+..|+ -.+|..++|+.++..
T Consensus 79 lvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka~ 158 (327)
T KOG2068|consen 79 LVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKAS 158 (327)
T ss_pred hhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHHh
Confidence 467888887754 44444 789999999999998765 23457999999999999999 599999999997665
Q ss_pred eC
Q 027228 76 PA 77 (226)
Q Consensus 76 ~a 77 (226)
..
T Consensus 159 ~g 160 (327)
T KOG2068|consen 159 LG 160 (327)
T ss_pred hC
Confidence 43
No 135
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=87.66 E-value=1.5 Score=42.57 Aligned_cols=67 Identities=15% Similarity=0.293 Sum_probs=57.0
Q ss_pred ccEEEEeCCCCcccHHHHHHHcc-cCCceeEEEEEecCCCCc-EEEEEEcChHHHHHHH-hhcCCeecce
Q 027228 4 TRTVQVKNVSDLAHEREIHEFFS-FSGDIERIEILREYGQSK-TAFVTFKDAKALEIAL-LLSGATIVDQ 70 (226)
Q Consensus 4 ~~tV~V~NLs~~tTe~~L~efFs-~cG~I~sI~i~~d~~~~~-~A~V~F~~~~aa~tAl-~Lng~~l~gr 70 (226)
++.+.+--+|...|-.||-.|.. ++-.|.+|++++|+.+.+ ...|.|.+..+|.+-- .+||..|..-
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~l 143 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFNSL 143 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCCCC
Confidence 46788999999999988888875 567799999999886666 4899999999999987 6999988653
No 136
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=87.58 E-value=1.7 Score=37.22 Aligned_cols=58 Identities=19% Similarity=0.231 Sum_probs=45.0
Q ss_pred cHHHHHHHcccCCceeEEEEEecCCCCcEEEEEEcChHHHHHHH-hhc--CCeecceEEEEeeC
Q 027228 17 HEREIHEFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIAL-LLS--GATIVDQIVSITPA 77 (226)
Q Consensus 17 Te~~L~efFs~cG~I~sI~i~~d~~~~~~A~V~F~~~~aa~tAl-~Ln--g~~l~gr~I~V~~a 77 (226)
..+.|+++|+..+.+..+..++. .+-..|.|.+.++|..|. .|+ +..+.|..++|.-.
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~s---FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~ 68 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKS---FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFG 68 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETT---TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE--
T ss_pred hHHHHHHHHHhcCCceEEEEcCC---CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEc
Confidence 45789999999999988888744 678999999999999997 688 99999999999755
No 137
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=85.16 E-value=0.45 Score=46.33 Aligned_cols=69 Identities=20% Similarity=0.224 Sum_probs=55.6
Q ss_pred EEEeCCCCc-ccHHHHHHHcccCCceeEEEEEecCCCCcEEEEEEcChHHHHHHHhhcCCeecceEEEEeeCC
Q 027228 7 VQVKNVSDL-AHEREIHEFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIALLLSGATIVDQIVSITPAE 78 (226)
Q Consensus 7 V~V~NLs~~-tTe~~L~efFs~cG~I~sI~i~~d~~~~~~A~V~F~~~~aa~tAl~Lng~~l~gr~I~V~~a~ 78 (226)
+.+.-+++. -|-.+|...|..+|+|..|.+-.. ..-|.|+|....++-.|-...+..|++|.|+|..-.
T Consensus 375 l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~---~~~a~vTF~t~aeag~a~~s~~avlnnr~iKl~whn 444 (526)
T KOG2135|consen 375 LALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS---SLHAVVTFKTRAEAGEAYASHGAVLNNRFIKLFWHN 444 (526)
T ss_pred hhhhccCCCCchHhhhhhhhhhcCccccccccCc---hhhheeeeeccccccchhccccceecCceeEEEEec
Confidence 333444443 367889999999999999998544 457999999999999999999999999999997543
No 138
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=84.31 E-value=0.3 Score=46.61 Aligned_cols=72 Identities=18% Similarity=0.093 Sum_probs=60.2
Q ss_pred ccEEEEeCCCCc-ccHHHHHHHcccCCceeEEEEEecC-CCCcEEEEEEcChHHHHHHHhhcCCeecceEEEEe
Q 027228 4 TRTVQVKNVSDL-AHEREIHEFFSFSGDIERIEILREY-GQSKTAFVTFKDAKALEIALLLSGATIVDQIVSIT 75 (226)
Q Consensus 4 ~~tV~V~NLs~~-tTe~~L~efFs~cG~I~sI~i~~d~-~~~~~A~V~F~~~~aa~tAl~Lng~~l~gr~I~V~ 75 (226)
.+++||+++.+. ++-.+...+|-|++...-|.+..+. .+..|||+.|.+..++..+|.-||..+..++++..
T Consensus 52 sRtcyVkf~d~~sv~vaQhLtntvfvdraliv~p~~~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~ 125 (479)
T KOG4676|consen 52 SRTCYVKFLDSQSVTVAQHLTNTVFVDRALIVRPYGDEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKI 125 (479)
T ss_pred eeeEEEeccCCcceeHHhhhccceeeeeeEEEEecCCCCCccHHHHHhcCcccccccccCCCCccCCCCccccc
Confidence 579999999986 6778888999999988877777665 45678999999999999999999988888877543
No 139
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=84.28 E-value=1.1 Score=32.37 Aligned_cols=58 Identities=28% Similarity=0.350 Sum_probs=34.7
Q ss_pred CcccHHHHHHHcccCCc-----eeEEEEEecCCCCcEEEEEEcChHHHHHHH-hhcCCeecceEEEEeeC
Q 027228 14 DLAHEREIHEFFSFSGD-----IERIEILREYGQSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPA 77 (226)
Q Consensus 14 ~~tTe~~L~efFs~cG~-----I~sI~i~~d~~~~~~A~V~F~~~~aa~tAl-~Lng~~l~gr~I~V~~a 77 (226)
...+..+|..++...+. |-.|++. ..|+||+-... .++.++ .|++..+.|+.|.|+++
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~-----~~~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIF-----DNFSFVEVPEE-VAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE------SS-EEEEE-TT--HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEe-----eeEEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEEC
Confidence 35788899999987654 5577775 44899999875 556666 79999999999999875
No 140
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=83.79 E-value=2.2 Score=33.93 Aligned_cols=59 Identities=14% Similarity=0.168 Sum_probs=35.2
Q ss_pred EEEEeCCCCcc---------cHHHHHHHcccCCceeEEEEEecCCCCcEEEEEEcCh-HHHHHHHhhcC
Q 027228 6 TVQVKNVSDLA---------HEREIHEFFSFSGDIERIEILREYGQSKTAFVTFKDA-KALEIALLLSG 64 (226)
Q Consensus 6 tV~V~NLs~~t---------Te~~L~efFs~cG~I~sI~i~~d~~~~~~A~V~F~~~-~aa~tAl~Lng 64 (226)
+++|-|++... +-+.|++.|+.+..++-.-+....+..+++.|.|.+. .+...|+.|..
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~kv~~l~~~~gh~g~aiv~F~~~w~Gf~~A~~l~~ 78 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLKVKPLYGKQGHTGFAIVEFNKDWSGFKNAMRLEK 78 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SEEEEEEETTEEEEEEEEE--SSHHHHHHHHHHHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCceeEECcCCCCCcEEEEEEECCChHHHHHHHHHHH
Confidence 67888997644 5678999998777765444444446688999999865 57888886653
No 141
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=81.26 E-value=1.1 Score=45.01 Aligned_cols=71 Identities=8% Similarity=0.163 Sum_probs=55.2
Q ss_pred ccEEEEeCCCCcccHHHHHHHcc-cCCceeEEEEEecCCCCcEEEEEEcChHHHHHHH-hhcCCee---cceEEEEeeC
Q 027228 4 TRTVQVKNVSDLAHEREIHEFFS-FSGDIERIEILREYGQSKTAFVTFKDAKALEIAL-LLSGATI---VDQIVSITPA 77 (226)
Q Consensus 4 ~~tV~V~NLs~~tTe~~L~efFs-~cG~I~sI~i~~d~~~~~~A~V~F~~~~aa~tAl-~Lng~~l---~gr~I~V~~a 77 (226)
+..|||.||---+|..+|+++.. .||.|+..+|-. -...|||.|.+.+.|-.-. .|+|-.. +++.|+|...
T Consensus 444 SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmDk---IKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~adf~ 519 (718)
T KOG2416|consen 444 SNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMDK---IKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIADFV 519 (718)
T ss_pred cceEeeecccccchHHHHHHHHhhccCchHHHHHHH---hhcceeEecccHHHHHHHHHHHhccccCCCCCceeEeeec
Confidence 46799999999999999999999 899999885521 1447999999887655444 6888765 6677887643
No 142
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=79.28 E-value=5.4 Score=39.90 Aligned_cols=66 Identities=12% Similarity=0.158 Sum_probs=53.5
Q ss_pred cEEEEeCCCCcccHHHHHHHccc--CCceeEEEEEecCCCCcEEEEEEcChHHHHHHH-hhc--CCeecceEEEE
Q 027228 5 RTVQVKNVSDLAHEREIHEFFSF--SGDIERIEILREYGQSKTAFVTFKDAKALEIAL-LLS--GATIVDQIVSI 74 (226)
Q Consensus 5 ~tV~V~NLs~~tTe~~L~efFs~--cG~I~sI~i~~d~~~~~~A~V~F~~~~aa~tAl-~Ln--g~~l~gr~I~V 74 (226)
+-|++.-||..+.+++|+-+|+. |=++.++++..++ -=||+|+++.+|..|. .|- -.+|-|++|.-
T Consensus 176 cIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~----nWyITfesd~DAQqAykylreevk~fqgKpImA 246 (684)
T KOG2591|consen 176 CIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND----NWYITFESDTDAQQAYKYLREEVKTFQGKPIMA 246 (684)
T ss_pred eEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC----ceEEEeecchhHHHHHHHHHHHHHhhcCcchhh
Confidence 45788999999999999999984 9999999998766 3799999999999886 233 24566666654
No 143
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=78.89 E-value=2.4 Score=44.29 Aligned_cols=74 Identities=16% Similarity=0.195 Sum_probs=62.9
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCCCCcEEEEEEcChHHHHHHH-hhcCCeecc--eEEEEeeCCCC
Q 027228 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIAL-LLSGATIVD--QIVSITPAENY 80 (226)
Q Consensus 4 ~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~~~~~~A~V~F~~~~aa~tAl-~Lng~~l~g--r~I~V~~a~~~ 80 (226)
.+-++|+++.+.+....+...|..+|.|..|.+..- ..+|||.+++..++..|+ .|-|.-|+| +.+.|..+..-
T Consensus 455 ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hg---q~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvdla~~~ 531 (975)
T KOG0112|consen 455 TTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHG---QPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVDLASPP 531 (975)
T ss_pred ceeeccCCCCCCChHHHHHHHhhccCcceeeecccC---CcceeeecccCccchhhHHHHhcCcCCCCCcccccccccCC
Confidence 356899999999999999999999999999988532 459999999999999999 599999986 57888765443
No 144
>PF01296 Galanin: Galanin; InterPro: IPR008174 Galanin is a peptide hormone that controls various biological activities []. Galanin-like immuno-reactivity has been found in the central and peripheral nervous systems of mammals, with high concentrations demonstrated in discrete regions of the central nervous system, including the median eminence, hypothalamus, arcuate nucleus, septum, neuro-intermediate lobe of the pituitary, and the spinal cord. Its localisation within neurosecretory granules suggests that galanin may function as a neurotransmitter, and it has been shown to coexist with a variety of other peptide and amine neurotransmitters within individual neurons []. Although the precise physiological role of galanin is uncertain, it has a number of pharmacological properties: it stimulates food intake, when injected into the third ventricle of rats; it increases levels of plasma growth hormone and prolactin, and decreases dopamine levels in the median eminence []; and infusion into humans results in hyperglycemia and glucose intolerance, and inhibits pancreatic release of insulin, somatostatin and pancreatic peptide. Galanin also modulates smooth muscle contractility within the gastro-intestinal and genito-urinary tracts, all such activities suggesting that the hormone may play an important role in the nervous modulation of endocrine and smooth muscle function []. Galanin is a 29 amino acid peptide processed from a larger precursor protein. Except in human, galanin is C-terminally amidated. Its sequence is highly conserved and the first 14 residues are identical in all currently known sequences.; GO: 0005179 hormone activity, 0005576 extracellular region
Probab=78.23 E-value=0.33 Score=29.47 Aligned_cols=25 Identities=20% Similarity=0.469 Sum_probs=22.3
Q ss_pred hhccccccHHHHHHHHHhhhhcCcc
Q 027228 129 LARGSAIRQEAVNKAKAFDEKHQFT 153 (226)
Q Consensus 129 LA~Gyvl~d~ai~kA~~fDekh~is 153 (226)
-..||.||..||.-=+.|-+|||+.
T Consensus 5 nsagyLlGPhaiD~HRSf~DK~Gla 29 (29)
T PF01296_consen 5 NSAGYLLGPHAIDNHRSFGDKHGLA 29 (29)
T ss_pred cccceEeccccccCccccccccCCC
Confidence 3579999999999999999999974
No 145
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=75.27 E-value=2.6 Score=40.97 Aligned_cols=65 Identities=20% Similarity=0.210 Sum_probs=51.4
Q ss_pred EEEEeCCCCcccHHHHHHHcccCCceeEEEEEecC---CCCcEEEEEEcChHHHHHHH-hhcCC-eecceEEEEee
Q 027228 6 TVQVKNVSDLAHEREIHEFFSFSGDIERIEILREY---GQSKTAFVTFKDAKALEIAL-LLSGA-TIVDQIVSITP 76 (226)
Q Consensus 6 tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~---~~~~~A~V~F~~~~aa~tAl-~Lng~-~l~gr~I~V~~ 76 (226)
.+|++||++..+.+++...|... + +...+ -++++|||...+..-+..|+ .|+|. ++.|..+.|..
T Consensus 3 klyignL~p~~~psdl~svfg~a-k-----~~~~g~fl~k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~ 72 (584)
T KOG2193|consen 3 KLYIGNLSPQVTPSDLESVFGDA-K-----IPGSGQFLVKSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEH 72 (584)
T ss_pred cccccccCCCCChHHHHHHhccc-c-----CCCCcceeeecceeeccCCchhhhhhhHHhhchhhhhcCceeeccc
Confidence 57999999999999999999764 1 11111 14789999999999999999 58885 57888888863
No 146
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=74.50 E-value=4.9 Score=28.85 Aligned_cols=19 Identities=37% Similarity=0.567 Sum_probs=16.4
Q ss_pred HHHHHHcccCCceeEEEEE
Q 027228 19 REIHEFFSFSGDIERIEIL 37 (226)
Q Consensus 19 ~~L~efFs~cG~I~sI~i~ 37 (226)
.+||+|||..|+|.-+.+-
T Consensus 9 ~~iR~~fs~lG~I~vLYvn 27 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVN 27 (62)
T ss_pred HHHHHHHHhcCcEEEEEEc
Confidence 5899999999999877664
No 147
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=74.26 E-value=1.5 Score=39.93 Aligned_cols=72 Identities=19% Similarity=0.045 Sum_probs=57.9
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecC---CCCcEEEEEEcChHHHHHHHhhcCC-eecceEEEEe
Q 027228 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREY---GQSKTAFVTFKDAKALEIALLLSGA-TIVDQIVSIT 75 (226)
Q Consensus 4 ~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~---~~~~~A~V~F~~~~aa~tAl~Lng~-~l~gr~I~V~ 75 (226)
..+.+++++.+.+.+.++..||...|......+.... ...+++++.|+..+.+..+|.+++. .+.++.+...
T Consensus 88 ~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~d 163 (285)
T KOG4210|consen 88 SSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKD 163 (285)
T ss_pred cccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCc
Confidence 3578999999999999999999999977766665533 2468999999999999999999986 5555554443
No 148
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=74.19 E-value=3.4 Score=37.15 Aligned_cols=61 Identities=18% Similarity=0.180 Sum_probs=43.8
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCC-------------------CCcEEEEEEcChHHHHHHHhhcC
Q 027228 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYG-------------------QSKTAFVTFKDAKALEIALLLSG 64 (226)
Q Consensus 4 ~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~~-------------------~~~~A~V~F~~~~aa~tAl~Lng 64 (226)
.+++|+-|||+.+|++.|.+|-+.||-+..+......+ ...+|+++|.-+.-+..+..|-+
T Consensus 40 Kd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~~y~~e~gl~es~~~ar~sl~~p~~v~~~~~a~k~~~~ps~~~c~~alk~ 119 (261)
T KOG4008|consen 40 KDCLFLVNVPLLSTEEHLKRFVSQLGHVQELLYNDEFGLHESDLSARTSLLMPSTVNEKRYAPKFVDAPSINNCWNALKK 119 (261)
T ss_pred ccceeeecccccccHHHHHHHHHHhhhhhheecccchhhhhCCchhhhhhccCCcccceeeccceeecchHHHHHhccCc
Confidence 47899999999999999999999999877766643221 12477766666655544444444
No 149
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=72.63 E-value=10 Score=28.56 Aligned_cols=53 Identities=17% Similarity=0.126 Sum_probs=42.3
Q ss_pred EEEEeCCCCcccHHHHHHHccc-CC-ceeEEEEEecCCCCcEEEEEEcChHHHHH
Q 027228 6 TVQVKNVSDLAHEREIHEFFSF-SG-DIERIEILREYGQSKTAFVTFKDAKALEI 58 (226)
Q Consensus 6 tV~V~NLs~~tTe~~L~efFs~-cG-~I~sI~i~~d~~~~~~A~V~F~~~~aa~t 58 (226)
..++--+++.++..+|++.+.. || +|.+|+...-+...+.|||+|...+.|..
T Consensus 22 n~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~~KKA~V~L~~g~~A~~ 76 (84)
T PRK14548 22 NKLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPKGEKKAYVKLAEEYDAEE 76 (84)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCcEEEEEEeCCCCcHHH
Confidence 4566778899999999998874 45 78899988777667899999987765544
No 150
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=64.57 E-value=19 Score=26.76 Aligned_cols=55 Identities=22% Similarity=0.184 Sum_probs=42.4
Q ss_pred EEEEeCCCCcccHHHHHHHccc-CC-ceeEEEEEecCCCCcEEEEEEcChHHH-HHHH
Q 027228 6 TVQVKNVSDLAHEREIHEFFSF-SG-DIERIEILREYGQSKTAFVTFKDAKAL-EIAL 60 (226)
Q Consensus 6 tV~V~NLs~~tTe~~L~efFs~-cG-~I~sI~i~~d~~~~~~A~V~F~~~~aa-~tAl 60 (226)
.-|+-.+++.++..+|++.++. || +|.+|+...-+...+-|||++...+.| +-|.
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~~~KKA~VtL~~g~~a~~va~ 72 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPRGEKKAYVKLAEEYAAEEIAS 72 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCceEEEEEECCCCcHHHHHH
Confidence 4677788999999999988874 45 788888887776678999999766544 3443
No 151
>smart00071 Galanin Galanin. Galanin [1,2,3] is a neuropeptide that controls various biological activities: it regulates the release growth hormone, inhibits the release of insulin and somatostatin, contracts smooth muscle of the gastrointestinal and genitourinary tract and may be involved in the control of adrenal secretion
Probab=42.27 E-value=4.5 Score=31.31 Aligned_cols=28 Identities=21% Similarity=0.482 Sum_probs=24.4
Q ss_pred HhhccccccHHHHHHHHHhhhhcCccHH
Q 027228 128 VLARGSAIRQEAVNKAKAFDEKHQFTAN 155 (226)
Q Consensus 128 ~LA~Gyvl~d~ai~kA~~fDekh~iss~ 155 (226)
+=..||.||.+||.--+.|-.|||++.+
T Consensus 16 lnsagyllgp~aid~hrs~~dk~g~~gK 43 (103)
T smart00071 16 LNSAGYLLGPHAIDNHRSFHDKHGLTGK 43 (103)
T ss_pred eccCceeeCccccccccccccCCCcccc
Confidence 3457999999999999999999998864
No 152
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=40.36 E-value=89 Score=26.02 Aligned_cols=55 Identities=18% Similarity=0.194 Sum_probs=42.2
Q ss_pred EEEEeCCCCcccHHHHHHHccc-CC-ceeEEEEEecCCCCcEEEEEEcChH-HHHHHH
Q 027228 6 TVQVKNVSDLAHEREIHEFFSF-SG-DIERIEILREYGQSKTAFVTFKDAK-ALEIAL 60 (226)
Q Consensus 6 tV~V~NLs~~tTe~~L~efFs~-cG-~I~sI~i~~d~~~~~~A~V~F~~~~-aa~tAl 60 (226)
.-+|-.++..++..+|++.+.. || +|..|+.+..++..+-|||++.... +.+-|-
T Consensus 83 N~yvF~Vd~kAnK~qIK~AVEklf~VkV~kVNTli~p~g~KKA~V~L~~~~~aidva~ 140 (145)
T PTZ00191 83 NTLVFIVDQRANKTQIKKAVEKLYDVKVVKVNTLITPDGLKKAYIRLSPDVDALDVAN 140 (145)
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCeeEEEEeEEcCCCceEEEEEECCCCcHHHHHH
Confidence 4567778899999999988874 44 6888888877766789999996655 455553
No 153
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=38.68 E-value=70 Score=24.23 Aligned_cols=48 Identities=25% Similarity=0.257 Sum_probs=36.3
Q ss_pred cEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCCCCcEEEEEEcC
Q 027228 5 RTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYGQSKTAFVTFKD 52 (226)
Q Consensus 5 ~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~~~~~~A~V~F~~ 52 (226)
.-|||+|++..+-|.=....-+.|++=.-+-+.++.+..||.|-+.-+
T Consensus 26 ~GVyVg~~s~rVRe~lW~~v~~~~~~G~a~m~~~~~neqG~~~~t~G~ 73 (86)
T PF09707_consen 26 PGVYVGNVSARVRERLWERVTEWIGDGSAVMVWSDNNEQGFDFRTLGD 73 (86)
T ss_pred CCcEEcCCCHHHHHHHHHHHHhhCCCccEEEEEccCCCCCEEEEEeCC
Confidence 359999999999988888888888775555555555667888887743
No 154
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=37.74 E-value=23 Score=26.98 Aligned_cols=23 Identities=30% Similarity=0.505 Sum_probs=20.3
Q ss_pred ccEEEEeCCCCcccHHHHHHHcc
Q 027228 4 TRTVQVKNVSDLAHEREIHEFFS 26 (226)
Q Consensus 4 ~~tV~V~NLs~~tTe~~L~efFs 26 (226)
.++|.|+|||....|++|+|...
T Consensus 52 ~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 52 KRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred CCEEEEeCCCCCCChhhheeeEE
Confidence 58999999999999999997643
No 155
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=37.67 E-value=23 Score=37.23 Aligned_cols=65 Identities=20% Similarity=0.244 Sum_probs=52.6
Q ss_pred eCCCCcccHHHHHHHcccCCceeEEEEEecCCCCcEEEEEEcChHHHHHHH-hhcCCee--cceEEEEeeC
Q 027228 10 KNVSDLAHEREIHEFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIAL-LLSGATI--VDQIVSITPA 77 (226)
Q Consensus 10 ~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~~~~~~A~V~F~~~~aa~tAl-~Lng~~l--~gr~I~V~~a 77 (226)
.|.+-..+-.-|..+|+.+|++.+++.+++-. -|.|.|..-+.+..|+ .|.|.++ .|-+.+|..+
T Consensus 304 ~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N---~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~a 371 (1007)
T KOG4574|consen 304 ENNAVNLTSSSLATLCSDYGSVASAWTLRDLN---MALVSFSSVESAILALDALQGKEVSVTGAPSRVSFA 371 (1007)
T ss_pred hcccccchHHHHHHHHHhhcchhhheeccccc---chhhhhHHHHHHHHhhhhhcCCcccccCCceeEEec
Confidence 34444677888999999999999999988753 7999999999999998 6998875 5777777644
No 156
>PRK05738 rplW 50S ribosomal protein L23; Reviewed
Probab=36.52 E-value=91 Score=23.62 Aligned_cols=50 Identities=26% Similarity=0.284 Sum_probs=35.7
Q ss_pred cEEEEeCCCCcccHHHHHHHccc-CC-ceeEEEEEecCC-------------CCcEEEEEEcChH
Q 027228 5 RTVQVKNVSDLAHEREIHEFFSF-SG-DIERIEILREYG-------------QSKTAFVTFKDAK 54 (226)
Q Consensus 5 ~tV~V~NLs~~tTe~~L~efFs~-cG-~I~sI~i~~d~~-------------~~~~A~V~F~~~~ 54 (226)
...++-.+++.++..+|++.|.. +| +|.+|+...-++ ..+.|||++...+
T Consensus 20 ~n~~~F~V~~~a~K~eIK~aie~lf~VkV~~VnT~~~~gk~kr~~~~~g~~~~~KKA~VtL~~g~ 84 (92)
T PRK05738 20 QNKYVFEVAPDATKPEIKAAVEKLFGVKVESVNTLNVKGKTKRFGRRIGKRSDWKKAIVTLAEGQ 84 (92)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHcCCceeEEEEEEeCCceeeecccccccCCcEEEEEEcCCCC
Confidence 35677788999999999988874 45 677777654431 2367888887654
No 157
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=35.11 E-value=78 Score=25.62 Aligned_cols=47 Identities=21% Similarity=0.270 Sum_probs=36.5
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCCCCcEEEEEE
Q 027228 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYGQSKTAFVTF 50 (226)
Q Consensus 4 ~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~~~~~~A~V~F 50 (226)
....++.|++...+..++...|..+|.|....+.............|
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (306)
T COG0724 225 SDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDGKIPKSRSF 271 (306)
T ss_pred cceeeccccccccchhHHHHhccccccceeeeccCCCCCcccccccc
Confidence 46789999999999999999999999997777765553333333444
No 158
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=34.88 E-value=11 Score=35.01 Aligned_cols=63 Identities=22% Similarity=0.383 Sum_probs=47.9
Q ss_pred cEEEEeCCCCc------------ccHHHHHHHcccCCceeEEEEEecC-------CC------Cc---------EEEEEE
Q 027228 5 RTVQVKNVSDL------------AHEREIHEFFSFSGDIERIEILREY-------GQ------SK---------TAFVTF 50 (226)
Q Consensus 5 ~tV~V~NLs~~------------tTe~~L~efFs~cG~I~sI~i~~d~-------~~------~~---------~A~V~F 50 (226)
-|||..+||-. -+|+-|+..|..+|.|..|.|+..+ ++ .+ -|||.|
T Consensus 150 dti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayvqf 229 (445)
T KOG2891|consen 150 DTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYVQF 229 (445)
T ss_pred CceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHHHH
Confidence 48999999853 3788999999999999999997643 10 11 267888
Q ss_pred cChHHHHHHH-hhcCCee
Q 027228 51 KDAKALEIAL-LLSGATI 67 (226)
Q Consensus 51 ~~~~aa~tAl-~Lng~~l 67 (226)
-...+..+|+ .|-|..+
T Consensus 230 meykgfa~amdalr~~k~ 247 (445)
T KOG2891|consen 230 MEYKGFAQAMDALRGMKL 247 (445)
T ss_pred HHHHhHHHHHHHHhcchH
Confidence 8888888888 5777654
No 159
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=33.36 E-value=72 Score=22.93 Aligned_cols=54 Identities=13% Similarity=0.155 Sum_probs=38.6
Q ss_pred cccHHHHHHHcccCCceeEEEEEecCCCCcEEEEEEcChHHHHHHH-hhcCCeecceEEEE
Q 027228 15 LAHEREIHEFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSI 74 (226)
Q Consensus 15 ~tTe~~L~efFs~cG~I~sI~i~~d~~~~~~A~V~F~~~~aa~tAl-~Lng~~l~gr~I~V 74 (226)
.++-.|++.-+..++- ..|.. ++ . --||.|.+...|+++. ..||+.+.+..+..
T Consensus 11 ~~~v~d~K~~Lr~y~~-~~I~~--d~--t-GfYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW-DRIRD--DR--T-GFYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCc-ceEEe--cC--C-EEEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 4566778877776654 33332 22 2 3799999999999999 58888888777654
No 160
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=30.96 E-value=54 Score=29.38 Aligned_cols=35 Identities=34% Similarity=0.364 Sum_probs=23.0
Q ss_pred EEEEEcChHHHHHHHhhcCCeecceEEEEeeCCCCC
Q 027228 46 AFVTFKDAKALEIALLLSGATIVDQIVSITPAENYV 81 (226)
Q Consensus 46 A~V~F~~~~aa~tAl~Lng~~l~gr~I~V~~a~~~~ 81 (226)
|||+|+++.++..|+.+-... .++.+.|.++++-.
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~-~~~~~~v~~APeP~ 35 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSK-RPNSWRVSPAPEPD 35 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcC-CCCCceEeeCCCcc
Confidence 799999999999998532111 12455666665543
No 161
>KOG3430 consensus Dynein light chain type 1 [Cytoskeleton]
Probab=30.76 E-value=69 Score=24.66 Aligned_cols=35 Identities=31% Similarity=0.408 Sum_probs=22.9
Q ss_pred cHHHHHHHHHhhhhcC-ccHHHHHHHh-hhhhccCcc
Q 027228 136 RQEAVNKAKAFDEKHQ-FTANASAKVI-SFDRRVGFT 170 (226)
Q Consensus 136 ~d~ai~kA~~fDekh~-iss~~~~~v~-~lD~k~g~t 170 (226)
.++||.-|++-=+++. +......+|+ +||+|||.+
T Consensus 18 q~~a~~~a~~al~~f~~~~k~iA~~iKkefDkkyG~~ 54 (90)
T KOG3430|consen 18 QQEAIELARQALEKFNVIEKDIAAFIKKEFDKKYGPT 54 (90)
T ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHhhhcCCc
Confidence 3456666665555666 6666666764 688888865
No 162
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=30.21 E-value=63 Score=30.05 Aligned_cols=52 Identities=19% Similarity=0.300 Sum_probs=42.1
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecC----------CCCcEEEEEEcChHH
Q 027228 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREY----------GQSKTAFVTFKDAKA 55 (226)
Q Consensus 4 ~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~----------~~~~~A~V~F~~~~a 55 (226)
+|++-..|+...++-..+-.-|-.+|+|++|.+..+. ...+...+-|-+.+.
T Consensus 15 TRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~ 76 (309)
T PF10567_consen 15 TRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREI 76 (309)
T ss_pred eHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHH
Confidence 5778889999999888888888899999999999765 124678888877653
No 163
>COG0351 ThiD Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [Coenzyme metabolism]
Probab=28.26 E-value=55 Score=29.78 Aligned_cols=23 Identities=43% Similarity=0.694 Sum_probs=20.0
Q ss_pred HHHHHHhhccccccHHHHHHHHHh
Q 027228 123 EVVTSVLARGSAIRQEAVNKAKAF 146 (226)
Q Consensus 123 ~vva~~LA~Gyvl~d~ai~kA~~f 146 (226)
.-+|..||+||-| .+|+.+||+|
T Consensus 216 aAIaa~LA~G~~l-~~AV~~Ak~f 238 (263)
T COG0351 216 AAIAANLAKGLSL-EEAVKKAKEF 238 (263)
T ss_pred HHHHHHHHcCCCH-HHHHHHHHHH
Confidence 5589999999999 6788999877
No 164
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=28.14 E-value=87 Score=20.70 Aligned_cols=25 Identities=8% Similarity=0.167 Sum_probs=21.5
Q ss_pred HHHHHHHHhhccccccHHHHHHHHH
Q 027228 121 AQEVVTSVLARGSAIRQEAVNKAKA 145 (226)
Q Consensus 121 a~~vva~~LA~Gyvl~d~ai~kA~~ 145 (226)
+...+..|..+||-+|++.++++..
T Consensus 21 ~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 21 VKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHHHHHHHHcCcccCHHHHHHHHH
Confidence 3467999999999999999998764
No 165
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=27.52 E-value=2e+02 Score=19.43 Aligned_cols=47 Identities=19% Similarity=0.186 Sum_probs=32.8
Q ss_pred HHHHHHcccCC-ceeEEEEEecCCCCcEEEEEEcChHHHHHHHhhcCCe
Q 027228 19 REIHEFFSFSG-DIERIEILREYGQSKTAFVTFKDAKALEIALLLSGAT 66 (226)
Q Consensus 19 ~~L~efFs~cG-~I~sI~i~~d~~~~~~A~V~F~~~~aa~tAl~Lng~~ 66 (226)
.+|-+.|+..| .|.++......+ ...--+.+.+++.+..+|.-.|-+
T Consensus 16 a~v~~~l~~~~inI~~i~~~~~~~-~~~~rl~~~~~~~~~~~L~~~G~~ 63 (66)
T cd04908 16 AAVTEILSEAGINIRALSIADTSE-FGILRLIVSDPDKAKEALKEAGFA 63 (66)
T ss_pred HHHHHHHHHCCCCEEEEEEEecCC-CCEEEEEECCHHHHHHHHHHCCCE
Confidence 46778888776 799998765544 456666677777777777666543
No 166
>PRK12280 rplW 50S ribosomal protein L23; Reviewed
Probab=27.24 E-value=1.3e+02 Score=25.39 Aligned_cols=36 Identities=19% Similarity=0.241 Sum_probs=28.6
Q ss_pred cEEEEeCCCCcccHHHHHHHccc-CC-ceeEEEEEecC
Q 027228 5 RTVQVKNVSDLAHEREIHEFFSF-SG-DIERIEILREY 40 (226)
Q Consensus 5 ~tV~V~NLs~~tTe~~L~efFs~-cG-~I~sI~i~~d~ 40 (226)
...|+-.+++.++..+|++.|.. || +|.+|+.+.-+
T Consensus 22 ~N~ytF~V~~~anK~eIK~AVE~iF~VkV~~VNT~~~~ 59 (158)
T PRK12280 22 KNVYTFKVDRRANKIEIKKAVEFIFKVKVLKVNIFNVD 59 (158)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEecC
Confidence 35788889999999999988874 45 68888877544
No 167
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=26.71 E-value=57 Score=25.64 Aligned_cols=42 Identities=14% Similarity=-0.036 Sum_probs=32.8
Q ss_pred EEEeCCCCc-ccHHHHHHHcccCCceeEEEEEecCC-CCcEEEE
Q 027228 7 VQVKNVSDL-AHEREIHEFFSFSGDIERIEILREYG-QSKTAFV 48 (226)
Q Consensus 7 V~V~NLs~~-tTe~~L~efFs~cG~I~sI~i~~d~~-~~~~A~V 48 (226)
|.+.|||+. .+++-++.+-+.||++..++...... ...||-|
T Consensus 107 Vri~glP~~~~~~~~~~~i~~~iG~~i~vD~~t~~~~~~~~~Rv 150 (153)
T PF14111_consen 107 VRIYGLPLHLWSEEILKAIGSKIGEPIEVDENTLKRTRLDFARV 150 (153)
T ss_pred hhhccCCHHHhhhHHHHHHHHhcCCeEEEEcCCCCcccccEEEE
Confidence 778899987 68888999999999999999876542 2345544
No 168
>PF14160 FAM110_C: Centrosome-associated C terminus
Probab=25.63 E-value=38 Score=26.96 Aligned_cols=15 Identities=27% Similarity=0.567 Sum_probs=12.4
Q ss_pred ccHHHHHHHcccCCc
Q 027228 16 AHEREIHEFFSFSGD 30 (226)
Q Consensus 16 tTe~~L~efFs~cG~ 30 (226)
..-.+|..||.+||=
T Consensus 18 ~~~sele~FF~~cGL 32 (111)
T PF14160_consen 18 RALSELERFFNYCGL 32 (111)
T ss_pred ccHHHHHHHHHHcCC
Confidence 345899999999994
No 169
>PF14893 PNMA: PNMA
Probab=25.34 E-value=60 Score=30.43 Aligned_cols=49 Identities=24% Similarity=0.366 Sum_probs=32.9
Q ss_pred ccEEEEeCCCCcccHHHHHHHcc----cCCceeEEE-EEecCCCCcEEEEEEcC
Q 027228 4 TRTVQVKNVSDLAHEREIHEFFS----FSGDIERIE-ILREYGQSKTAFVTFKD 52 (226)
Q Consensus 4 ~~tV~V~NLs~~tTe~~L~efFs----~cG~I~sI~-i~~d~~~~~~A~V~F~~ 52 (226)
.+.+-|.+||.++++++|++-.. ..|+-.=+- +.+.....+.|+|+|..
T Consensus 18 ~r~lLv~giP~dc~~~ei~e~l~~~l~plg~yrvl~~~f~~~~~~~aalve~~e 71 (331)
T PF14893_consen 18 QRALLVLGIPEDCEEAEIEEALQAALSPLGRYRVLGKMFRREENAKAALVEFAE 71 (331)
T ss_pred hhhheeecCCCCCCHHHHHHHHHHhhcccccceehhhHhhhhcccceeeeeccc
Confidence 57899999999999999998765 345422111 11122346788888875
No 170
>CHL00030 rpl23 ribosomal protein L23
Probab=25.14 E-value=1.2e+02 Score=23.32 Aligned_cols=50 Identities=14% Similarity=0.178 Sum_probs=36.8
Q ss_pred EEEEeCCCCcccHHHHHHHccc-CC-ceeEEEEEecCCC-------------CcEEEEEEcChHH
Q 027228 6 TVQVKNVSDLAHEREIHEFFSF-SG-DIERIEILREYGQ-------------SKTAFVTFKDAKA 55 (226)
Q Consensus 6 tV~V~NLs~~tTe~~L~efFs~-cG-~I~sI~i~~d~~~-------------~~~A~V~F~~~~a 55 (226)
..|+--++++++..+|++.++. +| +|.+|+...-++. .+-|+|++.+.+.
T Consensus 20 n~y~F~V~~~anK~eIK~avE~lf~VkV~~VNt~~~~~k~kr~~~~~G~~~~~KKAiVtL~~g~~ 84 (93)
T CHL00030 20 NQYTFDVDSGSTKTEIKHWIELFFGVKVIAVNSHRLPRKKRRMGPIMGHKMHYKRMIITLQPGYS 84 (93)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCeEEEEEEEEcCCCccccCCcccccCCcEEEEEEcCCcCE
Confidence 5677778999999999988874 44 6888887655422 3578898887554
No 171
>COG5353 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.02 E-value=2.4e+02 Score=23.90 Aligned_cols=50 Identities=20% Similarity=0.246 Sum_probs=40.7
Q ss_pred cEEEEeCCCCcccHHHHHHHccc---CCceeEEEEEecCC-------------CCcEEEEEEcChH
Q 027228 5 RTVQVKNVSDLAHEREIHEFFSF---SGDIERIEILREYG-------------QSKTAFVTFKDAK 54 (226)
Q Consensus 5 ~tV~V~NLs~~tTe~~L~efFs~---cG~I~sI~i~~d~~-------------~~~~A~V~F~~~~ 54 (226)
..|++.-++..++|++.++.-+. .++|.+|.+-+..+ +..|-+|.|++-.
T Consensus 88 ~KI~~k~asqGISe~~a~~~i~kE~~~~e~~~V~Lg~e~~~PiWEV~y~dkeg~~s~~~vdFetG~ 153 (161)
T COG5353 88 GKIYSKKASQGISEEDARAIISKEKAVKEIKSVTLGREKEKPIWEVTYLDKEGRLSFYYVDFETGK 153 (161)
T ss_pred CeEEEEehhcCCCHHHHHHHHhhhccccceeEEEEEeeCCceeEEEeecCccCcceEEEEEeccch
Confidence 57899999999999999999985 68899999977643 1348999999754
No 172
>PF08543 Phos_pyr_kin: Phosphomethylpyrimidine kinase; InterPro: IPR013749 This enzyme 2.7.4.7 from EC is part of the Thiamine pyrophosphate (TPP) synthesis pathway, TPP is an essential cofactor for many enzymes []. ; PDB: 2DDW_B 2DDO_B 2DDM_A 3IBQ_A 3H74_A 3HYO_A 1UB0_A 1VI9_D 1TD2_B 2PHP_D ....
Probab=24.25 E-value=74 Score=27.69 Aligned_cols=23 Identities=43% Similarity=0.712 Sum_probs=20.4
Q ss_pred HHHHHHhhccccccHHHHHHHHHh
Q 027228 123 EVVTSVLARGSAIRQEAVNKAKAF 146 (226)
Q Consensus 123 ~vva~~LA~Gyvl~d~ai~kA~~f 146 (226)
.+++.+|++||-| .+|+++|+.|
T Consensus 205 s~laa~l~~g~~l-~~Av~~A~~~ 227 (246)
T PF08543_consen 205 SALAAFLAKGYSL-EEAVEKAKNF 227 (246)
T ss_dssp HHHHHHHHTTSSH-HHHHHHHHHH
T ss_pred HHHHHHHHcCCCH-HHHHHHHHHH
Confidence 7799999999999 8899999865
No 173
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=24.19 E-value=4.2 Score=39.54 Aligned_cols=76 Identities=16% Similarity=0.280 Sum_probs=61.8
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCCCCcEEEEEEcChHHHHHHH-hhcCCeecceEEEEeeCCC
Q 027228 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPAEN 79 (226)
Q Consensus 4 ~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~~~~~~A~V~F~~~~aa~tAl-~Lng~~l~gr~I~V~~a~~ 79 (226)
++.+.+.|||+..-++-+..+...+|.++.++...-+...-.--|+|...+....|+ .|||..|....+.|..-++
T Consensus 80 srk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~etavvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~YiPd 156 (584)
T KOG2193|consen 80 SRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSETAVVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGYIPD 156 (584)
T ss_pred hhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchHHHHHHHHHHHHHHHHHHHHhhcchHhhhhhhhcccCch
Confidence 467889999999999999999999999999987543322334457788888899999 6999999999999975443
No 174
>PF00276 Ribosomal_L23: Ribosomal protein L23; InterPro: IPR013025 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This domain is found in both eukaryotic L25 and prokaryotic and eukaryotic L23 proteins.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3DF4_T 3DF2_T 4A1E_R 4A1A_R 4A1C_R 4A17_R 2HGU_W 2HGQ_W 1N88_A 2HGJ_W ....
Probab=24.09 E-value=2.7e+02 Score=20.86 Aligned_cols=52 Identities=23% Similarity=0.299 Sum_probs=37.7
Q ss_pred EEEEeCCCCcccHHHHHHHccc-CC-ceeEEEEEecCC-----C--------CcEEEEEEcChHHHH
Q 027228 6 TVQVKNVSDLAHEREIHEFFSF-SG-DIERIEILREYG-----Q--------SKTAFVTFKDAKALE 57 (226)
Q Consensus 6 tV~V~NLs~~tTe~~L~efFs~-cG-~I~sI~i~~d~~-----~--------~~~A~V~F~~~~aa~ 57 (226)
..++-.+++.+|..+|++.+.. +| +|.+|+...-.+ . .+.|+|++.+.+...
T Consensus 21 n~~tF~V~~~atK~~Ik~aie~iy~V~V~~Vnt~~~~gk~kR~g~~~g~~~~~KKaiVtL~~~~~i~ 87 (91)
T PF00276_consen 21 NQYTFEVDPRATKTEIKEAIEKIYGVKVKKVNTMNYPGKKKRKGKFVGKTKDYKKAIVTLKEGDKIP 87 (91)
T ss_dssp SEEEEEETTTSTHHHHHHHHHHHHTSEEEEEEEEEETSEEEESSSCEEEE-EEEEEEEEESTTSCHH
T ss_pred CEEEEEEeCCCCHHHHHHHHHhhcCCCeeEEEEeEeCCCceEeCCccccCCCcEEEEEEeCCCCccc
Confidence 3566678999999999999984 45 677777765431 1 268999999876544
No 175
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=23.76 E-value=2.1e+02 Score=18.44 Aligned_cols=42 Identities=24% Similarity=0.353 Sum_probs=30.4
Q ss_pred HHHHHHcccCC-ceeEEEEEecCCCCcEEEEEEcChHHHHHHH
Q 027228 19 REIHEFFSFSG-DIERIEILREYGQSKTAFVTFKDAKALEIAL 60 (226)
Q Consensus 19 ~~L~efFs~cG-~I~sI~i~~d~~~~~~A~V~F~~~~aa~tAl 60 (226)
.++-+.|+..| .|.++......+......+.+++.+.+..+|
T Consensus 13 ~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v~~~~~a~~~l 55 (56)
T cd04889 13 AEVTEILAEAGINIKAISIAETRGEFGILRLIFSDPERAKEVL 55 (56)
T ss_pred HHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEECCHHHHHHHh
Confidence 34556677665 7889987766545678888899987777665
No 176
>PF03013 Pyr_excise: Pyrimidine dimer DNA glycosylase; InterPro: IPR004260 Pyrimidine dimer DNA glycosylases are enzymes responsible for initiating the base excision repair pathway, excising pyrimidine dimers by hydrolysis of the glycosylic bond of the 5' pyrimidine, followed by the intra-pyrimidine phosphodiester bond []. One such enzyme is T4 endonuclease V, an enzyme responsible for the first step of a pyrimidine-dimer-specific excision-repair pathway []. Bacteriophage T4 that are deficient in these enzymes are extremely sensitive to UV.; PDB: 2FCC_B 1ENJ_A 1ENI_A 1ENK_A 1VAS_A 2END_A.
Probab=23.15 E-value=50 Score=26.85 Aligned_cols=19 Identities=16% Similarity=0.114 Sum_probs=11.4
Q ss_pred HHHHHHHhhccccccHHHH
Q 027228 122 QEVVTSVLARGSAIRQEAV 140 (226)
Q Consensus 122 ~~vva~~LA~Gyvl~d~ai 140 (226)
+.|++||+++||.......
T Consensus 66 ~~l~~EM~~RGY~~~~~~~ 84 (130)
T PF03013_consen 66 QLLMAEMQRRGYKPNSPWF 84 (130)
T ss_dssp HHHHHHHHHTT---S--S-
T ss_pred HHHHHHHHHcCCCCChhhh
Confidence 4899999999999976554
No 177
>PF13310 Virulence_RhuM: Virulence protein RhuM family
Probab=23.08 E-value=41 Score=30.60 Aligned_cols=28 Identities=18% Similarity=0.349 Sum_probs=22.7
Q ss_pred hhhhHHHHHHHHhhccccccHHHHHHHH
Q 027228 117 YVNRAQEVVTSVLARGSAIRQEAVNKAK 144 (226)
Q Consensus 117 ~~~~a~~vva~~LA~Gyvl~d~ai~kA~ 144 (226)
-.+=|..|+.|||-|||+|-|+-+....
T Consensus 45 FR~WAt~~Lkey~~KGf~~d~erLk~~~ 72 (260)
T PF13310_consen 45 FRQWATKVLKEYLIKGFVLDDERLKNGG 72 (260)
T ss_pred HHHHHHHhHHHHHHhhhhhhHHHHHccC
Confidence 4456779999999999999988776544
No 178
>PTZ00493 phosphomethylpyrimidine kinase; Provisional
Probab=22.76 E-value=77 Score=29.47 Aligned_cols=23 Identities=17% Similarity=0.332 Sum_probs=19.8
Q ss_pred HHHHHHhhccccccHHHHHHHHHh
Q 027228 123 EVVTSVLARGSAIRQEAVNKAKAF 146 (226)
Q Consensus 123 ~vva~~LA~Gyvl~d~ai~kA~~f 146 (226)
..+|.+||+||-| .+|+.+|++|
T Consensus 256 SAIAa~LA~G~~l-~~Av~~A~~f 278 (321)
T PTZ00493 256 TAIACYLAKKHNI-LQSCIESKKY 278 (321)
T ss_pred HHHHHHHHcCCCH-HHHHHHHHHH
Confidence 6799999999999 6788888876
No 179
>PRK10163 DNA-binding transcriptional repressor AllR; Provisional
Probab=22.48 E-value=1.7e+02 Score=25.95 Aligned_cols=53 Identities=13% Similarity=0.027 Sum_probs=42.4
Q ss_pred hHHHHHHHHhhcccc----------ccHHHHHHHHHhhhhcCccHHHHHHHhhhhhccCcccc
Q 027228 120 RAQEVVTSVLARGSA----------IRQEAVNKAKAFDEKHQFTANASAKVISFDRRVGFTEK 172 (226)
Q Consensus 120 ~a~~vva~~LA~Gyv----------l~d~ai~kA~~fDekh~iss~~~~~v~~lD~k~g~t~k 172 (226)
++.+++.+|...||+ ||...+.-+..+-....+...+.-.+..|-++.|.|=.
T Consensus 56 tv~RlL~tL~~~G~l~~~~~~~~Y~lG~~l~~Lg~~~~~~~~l~~~a~p~l~~La~~~getv~ 118 (271)
T PRK10163 56 TTFRLLKVLQAADFVYQDSQLGWWHIGLGVFNVGAAYIHNRDVLSVAGPFMRRLMLLSGETVN 118 (271)
T ss_pred HHHHHHHHHHHCCCEEEcCCCCeEEecHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHCCeEE
Confidence 345999999999987 55566788888888888888888899988888876533
No 180
>CHL00128 psbW photosystem II protein W; Reviewed
Probab=22.40 E-value=1.1e+02 Score=24.54 Aligned_cols=28 Identities=29% Similarity=0.458 Sum_probs=24.2
Q ss_pred eeEEEEEecC-CCCcEEEEEEcChHHHHH
Q 027228 31 IERIEILREY-GQSKTAFVTFKDAKALEI 58 (226)
Q Consensus 31 I~sI~i~~d~-~~~~~A~V~F~~~~aa~t 58 (226)
|..|+|.+.+ +..|.|...|++|.++..
T Consensus 15 ip~VrLtRsrdg~~g~a~f~F~~p~al~~ 43 (113)
T CHL00128 15 IPDVRLTRSRDGSTGTATFRFKNPNILDK 43 (113)
T ss_pred CCceEEEEccCCCceEEEEEECCchhhhh
Confidence 7789999887 568999999999988765
No 181
>TIGR03047 PS_II_psb28 photosystem II reaction center protein Psb28. Members of this protein family are the Psb28 protein of photosystem II. Two different protein families, apparently without homology between them, have been designated PsbW. Cyanobacterial proteins previously designated PsbW are members of the family described here. However, while members of the plant PsbW family are not found (so far) in Cyanobacteria, members of the present family do occur in plants. We therefore support the alternative designation that has emerged for this protein family, Psp28, rather than PsbW.
Probab=22.01 E-value=1.1e+02 Score=24.40 Aligned_cols=28 Identities=32% Similarity=0.536 Sum_probs=24.1
Q ss_pred eeEEEEEecC-CCCcEEEEEEcChHHHHH
Q 027228 31 IERIEILREY-GQSKTAFVTFKDAKALEI 58 (226)
Q Consensus 31 I~sI~i~~d~-~~~~~A~V~F~~~~aa~t 58 (226)
|..|+|.+.+ +..|.|...|++|.++..
T Consensus 12 ip~VrLtRsrdg~~g~a~f~F~~p~al~~ 40 (109)
T TIGR03047 12 IPDVRLTRSRDGGTGTALFRFENPKALDK 40 (109)
T ss_pred CCceEEEEccCCCceEEEEEECCchhhhh
Confidence 7889999887 568999999999988765
No 182
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=21.93 E-value=1.1e+02 Score=28.75 Aligned_cols=49 Identities=14% Similarity=0.193 Sum_probs=35.7
Q ss_pred cEEEEeCCCCcccHHHHHHHcccCCce-eEEEEEecCCCCcEEEEEEcChHHH
Q 027228 5 RTVQVKNVSDLAHEREIHEFFSFSGDI-ERIEILREYGQSKTAFVTFKDAKAL 56 (226)
Q Consensus 5 ~tV~V~NLs~~tTe~~L~efFs~cG~I-~sI~i~~d~~~~~~A~V~F~~~~aa 56 (226)
.-|+++|||.++.-.||+.-....|-+ -+|. ..+..+.||..|-+..++
T Consensus 331 ~di~~~nl~rd~rv~dlk~~lr~~~~~pm~is---wkg~~~k~flh~~~~~~~ 380 (396)
T KOG4410|consen 331 TDIKLTNLSRDIRVKDLKSELRKRECTPMSIS---WKGHFGKCFLHFGNRKGV 380 (396)
T ss_pred cceeeccCccccchHHHHHHHHhcCCCceeEe---eecCCcceeEecCCccCC
Confidence 359999999999999998777654432 2333 346688999999886543
No 183
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=21.16 E-value=57 Score=20.99 Aligned_cols=17 Identities=18% Similarity=0.169 Sum_probs=10.5
Q ss_pred CcccHHHHHHHcccCCc
Q 027228 14 DLAHEREIHEFFSFSGD 30 (226)
Q Consensus 14 ~~tTe~~L~efFs~cG~ 30 (226)
-.+++++|++.|...++
T Consensus 19 ~Dtd~~~Lk~vF~~i~~ 35 (36)
T PF11411_consen 19 VDTDEDQLKEVFNRIKK 35 (36)
T ss_dssp S---HHHHHHHHHCS--
T ss_pred ccCCHHHHHHHHHHhcc
Confidence 36889999999987764
No 184
>PRK11558 putative ssRNA endonuclease; Provisional
Probab=20.70 E-value=1.7e+02 Score=22.74 Aligned_cols=48 Identities=19% Similarity=0.186 Sum_probs=33.2
Q ss_pred cEEEEeCCCCcccHHHHHHHcccCCceeEEEEE-ecCCCCcEEEEEEcCh
Q 027228 5 RTVQVKNVSDLAHEREIHEFFSFSGDIERIEIL-REYGQSKTAFVTFKDA 53 (226)
Q Consensus 5 ~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~-~d~~~~~~A~V~F~~~ 53 (226)
.-|||+|++..+-+.--...=+.||. -++-|. +++...||+|-++-++
T Consensus 28 ~GVyVg~~S~rVRd~lW~~v~~~~~~-G~avmv~~~~~eqG~~~~t~G~~ 76 (97)
T PRK11558 28 AGVYVGDVSRRIREMIWQQVTQLAEE-GNVVMAWATNTESGFEFQTFGEN 76 (97)
T ss_pred CCcEEcCCCHHHHHHHHHHHHHhCCC-CcEEEEEcCCCCCCcEEEecCCC
Confidence 35999999998887766666667766 344443 4444468888887764
Done!