Query 027228
Match_columns 226
No_of_seqs 269 out of 1141
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 10:57:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027228.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027228hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fxv_A ELAV-like protein 1; RN 99.8 2.1E-18 7.1E-23 130.2 10.3 76 3-78 18-97 (99)
2 3ucg_A Polyadenylate-binding p 99.7 2.2E-17 7.5E-22 119.8 10.9 76 4-79 6-84 (89)
3 4f25_A Polyadenylate-binding p 99.7 1.2E-17 4E-22 128.6 9.9 77 4-80 5-83 (115)
4 3s7r_A Heterogeneous nuclear r 99.7 2.9E-17 9.8E-22 119.2 10.1 75 3-77 10-87 (87)
5 2lxi_A RNA-binding protein 10; 99.7 5.8E-18 2E-22 125.6 6.4 77 4-80 1-83 (91)
6 1s79_A Lupus LA protein; RRM, 99.7 5E-18 1.7E-22 129.4 6.2 77 4-80 11-89 (103)
7 3md1_A Nuclear and cytoplasmic 99.7 4.5E-17 1.5E-21 116.7 10.3 76 4-79 1-80 (83)
8 3s8s_A Histone-lysine N-methyl 99.7 3.8E-17 1.3E-21 125.8 10.2 76 4-79 6-85 (110)
9 3mdf_A Peptidyl-prolyl CIS-tra 99.7 3.2E-17 1.1E-21 118.0 9.1 75 3-77 6-84 (85)
10 2dgx_A KIAA0430 protein; RRM d 99.7 4.1E-17 1.4E-21 121.4 9.9 78 3-80 8-90 (96)
11 2cq3_A RNA-binding protein 9; 99.7 1E-16 3.6E-21 119.8 12.0 79 4-82 15-95 (103)
12 2dgs_A DAZ-associated protein 99.7 7.3E-17 2.5E-21 119.9 10.9 78 4-81 10-90 (99)
13 4a8x_A RNA-binding protein wit 99.7 5.1E-17 1.7E-21 117.4 9.6 75 4-78 4-83 (88)
14 2ywk_A Putative RNA-binding pr 99.7 5.3E-17 1.8E-21 119.3 9.8 75 4-78 16-93 (95)
15 3bs9_A Nucleolysin TIA-1 isofo 99.7 4.9E-17 1.7E-21 117.5 9.4 77 3-79 5-85 (87)
16 2mss_A Protein (musashi1); RNA 99.7 1.7E-17 5.8E-22 117.3 6.4 72 6-77 1-75 (75)
17 1whw_A Hypothetical protein ri 99.7 7.6E-17 2.6E-21 119.5 9.9 80 3-82 7-90 (99)
18 2cqi_A Nucleolysin TIAR; RNA r 99.7 9.8E-17 3.4E-21 120.0 10.5 77 4-80 15-93 (103)
19 2dgo_A Cytotoxic granule-assoc 99.7 1.9E-16 6.6E-21 120.5 11.9 80 3-82 14-97 (115)
20 2dnz_A Probable RNA-binding pr 99.7 1.3E-16 4.6E-21 117.2 10.6 80 3-82 4-87 (95)
21 1x4a_A Splicing factor, argini 99.7 1.2E-16 4.2E-21 120.8 10.5 77 4-80 22-99 (109)
22 3p5t_L Cleavage and polyadenyl 99.7 1.8E-17 6.2E-22 121.8 5.6 77 5-81 2-84 (90)
23 2cqc_A Arginine/serine-rich sp 99.7 1E-16 3.5E-21 117.6 9.4 75 4-78 15-93 (95)
24 2dgv_A HnRNP M, heterogeneous 99.7 1.1E-16 3.6E-21 117.1 9.4 79 3-81 7-87 (92)
25 1x5t_A Splicing factor 3B subu 99.7 1.2E-16 4E-21 117.7 9.4 79 3-81 4-87 (96)
26 2db1_A Heterogeneous nuclear r 99.7 6.5E-17 2.2E-21 125.2 8.4 75 4-78 17-96 (118)
27 2x1f_A MRNA 3'-END-processing 99.7 1.4E-16 4.9E-21 117.9 9.8 78 4-81 2-83 (96)
28 1wi8_A EIF-4B, eukaryotic tran 99.7 1.6E-16 5.5E-21 119.2 10.1 77 4-81 15-95 (104)
29 2dnn_A RNA-binding protein 12; 99.7 1E-16 3.5E-21 123.8 9.3 74 4-78 16-91 (109)
30 2lkz_A RNA-binding protein 5; 99.7 6.1E-17 2.1E-21 122.1 7.8 75 5-79 10-94 (95)
31 2cq0_A Eukaryotic translation 99.7 1.6E-16 5.5E-21 118.8 10.1 78 3-80 14-95 (103)
32 2e5h_A Zinc finger CCHC-type a 99.7 1.3E-16 4.6E-21 117.0 9.4 74 4-77 16-93 (94)
33 3ns6_A Eukaryotic translation 99.7 6.7E-17 2.3E-21 121.4 7.8 75 4-78 6-91 (100)
34 3lqv_A PRE-mRNA branch site pr 99.7 1.3E-16 4.6E-21 121.4 9.5 76 3-78 7-83 (115)
35 1wez_A HnRNP H', FTP-3, hetero 99.7 8.8E-17 3E-21 121.9 8.2 77 3-80 14-92 (102)
36 2do4_A Squamous cell carcinoma 99.7 1.9E-16 6.6E-21 117.7 10.0 76 4-79 17-95 (100)
37 2e5g_A U6 snRNA-specific termi 99.7 2.3E-16 7.9E-21 116.5 10.3 76 4-81 8-83 (94)
38 2err_A Ataxin-2-binding protei 99.7 1.7E-16 5.8E-21 121.0 9.7 76 4-79 29-106 (109)
39 2cpy_A RNA-binding protein 12; 99.7 8.4E-17 2.9E-21 123.4 8.0 77 3-79 14-93 (114)
40 1wg5_A Heterogeneous nuclear r 99.7 1.4E-16 4.7E-21 120.3 9.1 76 4-79 15-93 (104)
41 2cpf_A RNA binding motif prote 99.7 2.8E-16 9.5E-21 116.3 10.5 79 3-81 4-89 (98)
42 2dng_A Eukaryotic translation 99.7 3E-16 1E-20 117.5 10.7 77 4-81 15-94 (103)
43 2jwn_A Embryonic polyadenylate 99.7 1.8E-16 6.3E-21 122.2 9.8 77 4-80 36-115 (124)
44 1x5s_A Cold-inducible RNA-bind 99.7 9.8E-17 3.3E-21 119.6 8.0 79 3-81 11-93 (102)
45 3ulh_A THO complex subunit 4; 99.7 2.4E-16 8.1E-21 118.4 10.0 75 4-78 29-106 (107)
46 2cq4_A RNA binding motif prote 99.7 1.3E-16 4.6E-21 121.5 8.8 75 4-78 25-102 (114)
47 2dnm_A SRP46 splicing factor; 99.7 1.6E-16 5.5E-21 118.8 9.0 79 3-81 12-94 (103)
48 2d9p_A Polyadenylate-binding p 99.7 2.4E-16 8.1E-21 117.9 9.8 80 3-82 14-95 (103)
49 2krb_A Eukaryotic translation 99.7 6.7E-17 2.3E-21 116.3 6.4 72 4-75 1-81 (81)
50 1x4c_A Splicing factor, argini 99.7 2.8E-16 9.6E-21 119.2 10.0 74 4-81 15-94 (108)
51 2cpi_A CCR4-NOT transcription 99.7 1.4E-16 5E-21 121.5 8.5 78 3-80 14-101 (111)
52 1x5u_A Splicing factor 3B subu 99.7 1.9E-16 6.5E-21 118.6 8.8 77 4-80 15-95 (105)
53 2cqb_A Peptidyl-prolyl CIS-tra 99.7 1.8E-16 6.1E-21 118.2 8.6 78 4-81 12-93 (102)
54 1iqt_A AUF1, heterogeneous nuc 99.7 3.8E-17 1.3E-21 115.2 4.5 72 6-77 1-75 (75)
55 1p27_B RNA-binding protein 8A; 99.7 2.2E-16 7.6E-21 118.4 9.0 76 4-79 23-102 (106)
56 2dh8_A DAZ-associated protein 99.7 1.5E-16 5.3E-21 119.3 8.1 79 4-82 16-97 (105)
57 2jrs_A RNA-binding protein 39; 99.7 2.4E-16 8.1E-21 120.3 9.2 76 4-79 26-105 (108)
58 2nlw_A Eukaryotic translation 99.7 1.9E-16 6.4E-21 119.8 8.6 78 4-81 15-101 (105)
59 2cpz_A CUG triplet repeat RNA- 99.7 2.8E-16 9.5E-21 119.9 9.5 78 4-81 25-106 (115)
60 2dgw_A Probable RNA-binding pr 99.7 3.4E-16 1.2E-20 114.5 9.6 76 4-80 10-87 (91)
61 2la6_A RNA-binding protein FUS 99.7 2.8E-16 9.7E-21 116.8 9.0 74 4-77 13-98 (99)
62 2div_A TRNA selenocysteine ass 99.7 3E-16 1E-20 116.3 9.0 78 3-80 8-94 (99)
63 2dnh_A Bruno-like 5, RNA bindi 99.7 4.2E-16 1.4E-20 116.7 9.9 78 4-81 15-98 (105)
64 1x4e_A RNA binding motif, sing 99.7 8.1E-17 2.8E-21 116.3 5.8 75 3-77 4-82 (85)
65 2lmi_A GRSF-1, G-rich sequence 99.7 7.3E-17 2.5E-21 122.4 5.7 76 3-78 10-90 (107)
66 2ek1_A RNA-binding protein 12; 99.7 1.5E-16 5.1E-21 116.9 7.2 75 4-78 15-93 (95)
67 2dnq_A RNA-binding protein 4B; 99.7 6.3E-16 2.2E-20 113.1 10.5 75 3-82 7-82 (90)
68 1oo0_B CG8781-PA, drosophila Y 99.7 3.5E-16 1.2E-20 118.2 9.4 76 4-79 26-105 (110)
69 2khc_A Testis-specific RNP-typ 99.7 2.7E-16 9.2E-21 120.2 8.8 74 4-77 40-117 (118)
70 2do0_A HnRNP M, heterogeneous 99.7 9.1E-16 3.1E-20 116.4 11.5 77 4-80 15-94 (114)
71 2cph_A RNA binding motif prote 99.7 3.4E-16 1.2E-20 117.3 9.0 78 4-81 15-98 (107)
72 2hgl_A HNRPF protein, heteroge 99.7 1.6E-16 5.6E-21 127.3 7.7 75 4-78 44-123 (136)
73 2fy1_A RNA-binding motif prote 99.7 4E-16 1.4E-20 120.4 9.5 79 3-81 6-87 (116)
74 1x4h_A RNA-binding protein 28; 99.7 5.1E-16 1.7E-20 117.1 9.8 78 4-81 15-102 (111)
75 1x4b_A Heterogeneous nuclear r 99.7 6.2E-16 2.1E-20 118.1 10.3 79 4-82 27-108 (116)
76 2rs2_A Musashi-1, RNA-binding 99.6 6.2E-16 2.1E-20 118.0 10.1 77 4-80 25-104 (109)
77 1uaw_A Mouse-musashi-1; RNP-ty 99.6 1.6E-16 5.4E-21 112.3 6.3 72 5-77 1-76 (77)
78 2hzc_A Splicing factor U2AF 65 99.6 4.2E-16 1.4E-20 112.6 8.5 71 3-76 5-86 (87)
79 2jvr_A Nucleolar protein 3; RN 99.6 2.3E-16 7.8E-21 122.5 7.5 75 4-79 28-104 (111)
80 2dgu_A Heterogeneous nuclear r 99.6 4.6E-16 1.6E-20 116.7 9.0 77 1-82 8-85 (103)
81 2cpj_A Non-POU domain-containi 99.6 5.1E-16 1.7E-20 115.5 9.0 76 3-81 14-90 (99)
82 1p1t_A Cleavage stimulation fa 99.6 3.5E-16 1.2E-20 116.7 8.2 77 4-80 8-88 (104)
83 1sjq_A Polypyrimidine tract-bi 99.6 3.9E-16 1.3E-20 120.7 8.4 75 4-81 16-93 (105)
84 2cqd_A RNA-binding region cont 99.6 7E-16 2.4E-20 117.8 9.8 76 4-80 17-96 (116)
85 2j76_E EIF-4B, EIF4B, eukaryot 99.6 1.8E-16 6.2E-21 118.7 6.4 75 4-79 19-97 (100)
86 2kt5_A RNA and export factor-b 99.6 9.5E-16 3.3E-20 118.5 10.6 79 4-82 35-116 (124)
87 1h2v_Z 20 kDa nuclear CAP bind 99.6 8.5E-16 2.9E-20 123.2 10.5 80 3-82 38-121 (156)
88 1x4g_A Nucleolysin TIAR; struc 99.6 7.3E-16 2.5E-20 116.7 9.5 75 4-81 25-100 (109)
89 3n9u_C Cleavage and polyadenyl 99.6 6.1E-16 2.1E-20 126.1 9.6 75 4-78 55-135 (156)
90 2dgp_A Bruno-like 4, RNA bindi 99.6 3.9E-16 1.3E-20 117.0 7.9 77 4-80 13-96 (106)
91 2cqp_A RNA-binding protein 12; 99.6 3.4E-16 1.2E-20 115.8 7.4 76 4-79 15-94 (98)
92 1wel_A RNA-binding protein 12; 99.6 1.3E-16 4.6E-21 123.8 5.4 76 4-79 25-103 (124)
93 2la4_A Nuclear and cytoplasmic 99.6 5.9E-16 2E-20 115.3 8.7 72 4-78 27-99 (101)
94 2hvz_A Splicing factor, argini 99.6 3.1E-16 1.1E-20 116.8 7.1 75 5-81 1-76 (101)
95 2dgt_A RNA-binding protein 30; 99.6 1.2E-15 4.1E-20 112.0 10.2 73 4-81 10-83 (92)
96 2ytc_A PRE-mRNA-splicing facto 99.6 7.4E-16 2.5E-20 111.0 8.9 71 4-77 12-84 (85)
97 2dnp_A RNA-binding protein 14; 99.6 7.6E-16 2.6E-20 112.7 9.0 74 3-81 8-82 (90)
98 2cpe_A RNA-binding protein EWS 99.6 6.8E-16 2.3E-20 117.2 9.1 79 4-82 15-105 (113)
99 2ki2_A SS-DNA binding protein 99.6 1.1E-16 3.8E-21 116.7 4.3 76 5-81 2-81 (90)
100 1why_A Hypothetical protein ri 99.6 8.6E-16 3E-20 113.8 8.8 73 4-79 17-92 (97)
101 1nu4_A U1A RNA binding domain; 99.6 4.2E-16 1.4E-20 114.9 7.1 76 4-79 8-88 (97)
102 2cpd_A Apobec-1 stimulating pr 99.6 1.7E-15 5.9E-20 112.6 10.3 74 2-80 13-89 (99)
103 1u6f_A Tcubp1, RNA-binding pro 99.6 1.3E-15 4.6E-20 119.5 10.1 79 4-82 42-124 (139)
104 2xnq_A Nuclear polyadenylated 99.6 1.9E-15 6.7E-20 113.0 10.5 71 3-78 21-93 (97)
105 1x4d_A Matrin 3; structural ge 99.6 4.9E-16 1.7E-20 119.1 7.3 76 4-82 15-94 (102)
106 3ex7_B RNA-binding protein 8A; 99.6 8.3E-16 2.8E-20 118.8 8.6 78 3-80 21-102 (126)
107 2cqg_A TDP-43, TAR DNA-binding 99.6 2E-15 6.9E-20 112.8 10.5 78 4-82 15-95 (103)
108 2e44_A Insulin-like growth fac 99.6 7.3E-16 2.5E-20 113.6 7.9 76 4-80 15-92 (96)
109 2e5j_A Methenyltetrahydrofolat 99.6 1.1E-15 3.8E-20 113.4 8.7 74 4-79 19-93 (97)
110 2wbr_A GW182, gawky, LD47780P; 99.6 1E-15 3.6E-20 115.5 8.5 71 4-77 7-78 (89)
111 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.6 1.1E-15 3.7E-20 119.3 8.9 74 4-77 63-140 (140)
112 2kxn_B Transformer-2 protein h 99.6 8.3E-16 2.8E-20 121.2 8.3 76 4-79 46-125 (129)
113 2dhg_A TRNA selenocysteine ass 99.6 7.9E-16 2.7E-20 115.0 7.8 77 4-80 9-90 (104)
114 2cq1_A PTB-like protein L; RRM 99.6 2.3E-15 7.9E-20 114.7 10.4 76 4-82 15-93 (101)
115 2dha_A FLJ20171 protein; RRM d 99.6 3.9E-16 1.3E-20 123.2 6.1 76 3-78 22-103 (123)
116 1whx_A Hypothetical protein ri 99.6 6.4E-16 2.2E-20 118.4 6.9 74 4-80 10-84 (111)
117 2ad9_A Polypyrimidine tract-bi 99.6 1.4E-15 4.8E-20 119.8 9.1 76 4-82 31-109 (119)
118 2jvo_A Nucleolar protein 3; nu 99.6 2E-15 6.9E-20 115.3 9.4 71 4-79 31-102 (108)
119 2kn4_A Immunoglobulin G-bindin 99.6 1.3E-15 4.4E-20 121.8 8.7 78 4-81 70-151 (158)
120 3r27_A HnRNP L, heterogeneous 99.6 2.3E-15 8E-20 115.5 9.7 73 4-79 21-96 (100)
121 2i2y_A Fusion protein consists 99.6 1E-15 3.6E-20 121.9 7.8 74 4-79 73-147 (150)
122 2xs2_A Deleted in azoospermia- 99.6 9.7E-16 3.3E-20 114.3 7.1 75 4-79 9-85 (102)
123 2hgm_A HNRPF protein, heteroge 99.6 8.9E-16 3E-20 121.9 7.2 74 4-78 42-119 (126)
124 2dis_A Unnamed protein product 99.6 2.4E-15 8.4E-20 113.2 9.3 80 3-82 7-94 (109)
125 1wf1_A RNA-binding protein RAL 99.6 2.1E-15 7.2E-20 114.3 8.9 71 4-79 27-99 (110)
126 3md3_A Nuclear and cytoplasmic 99.6 2.3E-15 7.7E-20 118.4 9.3 77 5-81 1-80 (166)
127 1wex_A Hypothetical protein (r 99.6 1.8E-15 6.2E-20 115.8 8.4 75 4-81 15-92 (104)
128 2a3j_A U1 small nuclear ribonu 99.6 1.6E-15 5.4E-20 120.2 8.2 77 4-80 29-110 (127)
129 1fjc_A Nucleolin RBD2, protein 99.6 1.7E-15 5.9E-20 111.6 7.6 75 4-80 16-91 (96)
130 1fj7_A Nucleolin RBD1, protein 99.6 4.6E-16 1.6E-20 115.9 4.6 78 3-81 16-96 (101)
131 2kvi_A Nuclear polyadenylated 99.6 1.8E-15 6.2E-20 112.3 7.7 72 4-80 10-83 (96)
132 3beg_B Splicing factor, argini 99.6 1.1E-15 3.9E-20 117.6 6.5 72 4-79 16-93 (115)
133 2hgn_A Heterogeneous nuclear r 99.6 4.3E-16 1.5E-20 125.4 3.8 76 4-80 46-123 (139)
134 2fc9_A NCL protein; structure 99.6 2.6E-15 9E-20 111.8 7.8 74 4-80 15-91 (101)
135 2voo_A Lupus LA protein; RNA-b 99.6 4.4E-15 1.5E-19 124.6 10.1 79 4-82 109-189 (193)
136 1fxl_A Paraneoplastic encephal 99.6 8.9E-15 3E-19 115.1 11.2 77 4-80 2-82 (167)
137 1x5o_A RNA binding motif, sing 99.6 5.6E-15 1.9E-19 112.2 9.7 75 4-78 25-110 (114)
138 1wg1_A KIAA1579 protein, homol 99.6 3.6E-15 1.2E-19 109.0 7.8 74 4-81 5-79 (88)
139 1rk8_A CG8781-PA, CG8781-PA pr 99.6 5.3E-15 1.8E-19 120.1 9.6 76 4-79 72-151 (165)
140 2lea_A Serine/arginine-rich sp 99.6 2.1E-15 7.3E-20 119.5 6.9 78 4-81 47-128 (135)
141 1b7f_A Protein (SXL-lethal pro 99.6 7.8E-15 2.7E-19 116.0 10.0 78 3-80 2-83 (168)
142 2m2b_A RNA-binding protein 10; 99.6 8.1E-16 2.8E-20 120.5 4.2 76 4-80 23-108 (131)
143 1l3k_A Heterogeneous nuclear r 99.6 7.5E-15 2.6E-19 119.1 10.0 78 4-81 13-93 (196)
144 4f02_A Polyadenylate-binding p 99.6 7.8E-15 2.7E-19 122.9 10.4 77 4-80 15-95 (213)
145 3q2s_C Cleavage and polyadenyl 99.6 4.4E-15 1.5E-19 127.8 8.7 75 4-78 68-148 (229)
146 3d2w_A TAR DNA-binding protein 99.6 8.7E-15 3E-19 108.1 9.2 71 4-79 11-83 (89)
147 2cpx_A Hypothetical protein FL 99.6 6.6E-15 2.3E-19 111.8 8.4 77 4-81 25-106 (115)
148 3egn_A RNA-binding protein 40; 99.6 6.1E-15 2.1E-19 116.6 8.3 77 4-80 45-130 (143)
149 2cqh_A IGF-II mRNA-binding pro 99.6 7.2E-15 2.4E-19 107.8 8.1 73 4-80 8-83 (93)
150 1x4f_A Matrin 3; structural ge 99.6 3.5E-15 1.2E-19 116.4 6.5 76 4-82 25-104 (112)
151 4f02_A Polyadenylate-binding p 99.6 9.8E-15 3.4E-19 122.3 9.5 76 4-79 103-180 (213)
152 3md3_A Nuclear and cytoplasmic 99.5 2.2E-14 7.6E-19 112.7 10.3 75 4-78 87-165 (166)
153 1l3k_A Heterogeneous nuclear r 99.5 2E-14 6.7E-19 116.7 10.0 79 4-82 104-185 (196)
154 2cjk_A Nuclear polyadenylated 99.5 7.5E-15 2.6E-19 116.3 7.3 76 4-79 87-165 (167)
155 1wf0_A TDP-43, TAR DNA-binding 99.5 1E-14 3.6E-19 106.1 7.5 75 3-80 4-78 (88)
156 2fc8_A NCL protein; structure 99.5 1.1E-14 3.8E-19 108.3 7.7 74 4-80 15-92 (102)
157 3nmr_A Cugbp ELAV-like family 99.5 1.4E-14 5E-19 114.9 8.6 78 2-79 1-87 (175)
158 2g4b_A Splicing factor U2AF 65 99.5 1.7E-14 5.7E-19 114.8 8.9 74 4-77 94-171 (172)
159 2dnl_A Cytoplasmic polyadenyla 99.5 8.1E-15 2.8E-19 112.2 6.8 70 3-75 7-83 (114)
160 1x5p_A Negative elongation fac 99.5 4.1E-14 1.4E-18 104.9 10.2 73 3-80 14-87 (97)
161 3tyt_A Heterogeneous nuclear r 99.5 2.1E-14 7.1E-19 121.2 9.6 75 3-79 3-79 (205)
162 2qfj_A FBP-interacting repress 99.5 2.1E-14 7E-19 118.2 9.2 77 4-80 28-108 (216)
163 2lcw_A RNA-binding protein FUS 99.3 6.7E-16 2.3E-20 118.1 0.0 79 3-81 6-96 (116)
164 2yh0_A Splicing factor U2AF 65 99.5 3.1E-14 1E-18 115.7 9.6 79 1-82 1-90 (198)
165 2f3j_A RNA and export factor b 99.5 2.1E-14 7.1E-19 119.0 8.5 76 4-79 88-166 (177)
166 2qfj_A FBP-interacting repress 99.5 5.4E-14 1.9E-18 115.7 10.5 77 4-80 125-205 (216)
167 2ghp_A U4/U6 snRNA-associated 99.5 3.8E-14 1.3E-18 122.9 10.0 77 4-80 41-118 (292)
168 2cjk_A Nuclear polyadenylated 99.5 2.9E-14 1E-18 112.8 7.9 75 3-78 2-79 (167)
169 2g4b_A Splicing factor U2AF 65 99.5 7.5E-14 2.6E-18 111.0 9.9 77 3-82 3-90 (172)
170 1qm9_A Polypyrimidine tract-bi 99.5 2.3E-14 7.7E-19 117.4 6.9 76 3-80 2-79 (198)
171 3nmr_A Cugbp ELAV-like family 99.5 6.2E-14 2.1E-18 111.3 9.2 74 4-77 95-174 (175)
172 2yh0_A Splicing factor U2AF 65 99.5 6.9E-14 2.4E-18 113.6 9.4 76 4-79 114-193 (198)
173 2cq2_A Hypothetical protein LO 99.5 2.6E-14 9E-19 112.0 6.6 74 4-80 25-106 (114)
174 3pgw_A U1-A; protein-RNA compl 99.5 8.5E-14 2.9E-18 120.1 10.3 77 4-80 9-90 (282)
175 3zzy_A Polypyrimidine tract-bi 99.5 1.5E-13 5E-18 110.1 10.8 74 5-80 29-106 (130)
176 2e5i_A Heterogeneous nuclear r 99.5 1.5E-13 5E-18 108.9 10.6 73 5-80 26-102 (124)
177 2j8a_A Histone-lysine N-methyl 99.5 5.5E-14 1.9E-18 113.3 8.3 74 4-77 2-93 (136)
178 1sjr_A Polypyrimidine tract-bi 99.5 6.7E-14 2.3E-18 116.2 9.0 75 5-80 47-124 (164)
179 1fje_B Nucleolin RBD12, protei 99.5 7.9E-14 2.7E-18 111.6 9.0 74 4-79 99-173 (175)
180 1b7f_A Protein (SXL-lethal pro 99.5 9.9E-14 3.4E-18 109.6 9.2 74 4-77 89-168 (168)
181 2adc_A Polypyrimidine tract-bi 99.5 6.3E-14 2.2E-18 118.6 8.3 75 4-80 34-110 (229)
182 3pgw_S U1-70K; protein-RNA com 99.5 8.8E-14 3E-18 130.2 9.7 76 4-79 102-181 (437)
183 2diu_A KIAA0430 protein; struc 99.5 1.5E-13 5.1E-18 105.0 8.6 72 4-82 8-86 (96)
184 1fxl_A Paraneoplastic encephal 99.5 2.2E-13 7.5E-18 107.1 9.0 73 4-76 88-166 (167)
185 3sde_A Paraspeckle component 1 99.4 2.3E-13 7.9E-18 117.4 9.4 73 4-79 22-95 (261)
186 2pe8_A Splicing factor 45; RRM 99.4 6.5E-13 2.2E-17 101.6 10.8 76 3-78 7-92 (105)
187 2ghp_A U4/U6 snRNA-associated 99.4 2.6E-13 8.9E-18 117.5 9.3 76 4-79 210-290 (292)
188 2bz2_A Negative elongation fac 99.4 2.9E-13 9.9E-18 105.6 8.6 73 3-80 38-111 (121)
189 2dit_A HIV TAT specific factor 99.4 7.8E-13 2.7E-17 101.0 10.5 75 4-79 15-101 (112)
190 1fje_B Nucleolin RBD12, protei 99.4 9.5E-14 3.2E-18 111.1 5.4 79 3-81 12-92 (175)
191 3pgw_A U1-A; protein-RNA compl 99.4 4.4E-13 1.5E-17 115.6 9.7 72 4-77 207-280 (282)
192 3u1l_A PRE-mRNA-splicing facto 99.4 6E-13 2E-17 116.3 9.0 75 3-80 133-229 (240)
193 3smz_A Protein raver-1, ribonu 99.4 8.9E-13 3E-17 113.7 9.9 76 4-79 184-263 (284)
194 1qm9_A Polypyrimidine tract-bi 99.4 5.5E-13 1.9E-17 109.1 6.7 73 4-78 120-195 (198)
195 3smz_A Protein raver-1, ribonu 99.4 1.9E-12 6.6E-17 111.6 9.9 77 4-80 95-175 (284)
196 2adc_A Polypyrimidine tract-bi 99.4 1.4E-12 4.7E-17 110.3 8.8 73 4-78 151-226 (229)
197 3tyt_A Heterogeneous nuclear r 99.4 8E-13 2.7E-17 111.5 6.5 67 4-70 123-193 (205)
198 3sde_A Paraspeckle component 1 99.3 2.3E-12 7.8E-17 111.2 8.6 78 4-81 96-180 (261)
199 1jmt_A Splicing factor U2AF 35 99.3 1.5E-12 5.2E-17 99.2 4.4 70 9-78 20-104 (104)
200 3v4m_A Splicing factor U2AF 65 99.3 8.8E-12 3E-16 95.2 8.0 75 4-78 5-95 (105)
201 3ue2_A Poly(U)-binding-splicin 99.2 3.2E-11 1.1E-15 94.4 9.4 75 4-78 20-107 (118)
202 2d9o_A DNAJ (HSP40) homolog, s 99.1 5E-10 1.7E-14 85.2 10.9 73 5-80 11-90 (100)
203 1owx_A Lupus LA protein, SS-B, 99.1 2.2E-10 7.5E-15 90.7 8.6 73 2-77 16-93 (121)
204 3tht_A Alkylated DNA repair pr 99.1 1.3E-10 4.4E-15 106.4 8.0 71 4-77 18-96 (345)
205 3s6e_A RNA-binding protein 39; 99.1 2.6E-10 8.8E-15 88.7 8.4 74 4-78 7-91 (114)
206 2dnr_A Synaptojanin-1; RRM dom 99.0 1.7E-09 5.9E-14 81.7 8.0 69 5-78 8-84 (91)
207 1ufw_A Synaptojanin 2; RNP dom 98.8 4.7E-09 1.6E-13 79.9 6.4 69 5-78 16-93 (95)
208 3dxb_A Thioredoxin N-terminall 98.5 1.9E-07 6.6E-12 78.2 7.6 63 16-78 141-211 (222)
209 2l9w_A U4/U6 snRNA-associated- 98.4 8.6E-07 2.9E-11 69.4 7.6 71 4-77 21-97 (117)
210 2dhx_A Poly (ADP-ribose) polym 98.1 1.5E-05 5.3E-10 61.3 9.8 74 4-82 8-86 (104)
211 1wwh_A Nucleoporin 35, nucleop 97.8 0.00017 5.7E-09 56.8 10.1 72 4-79 24-96 (119)
212 1wey_A Calcipressin 1; structu 97.1 0.0021 7E-08 49.4 7.8 72 4-78 5-82 (104)
213 1uw4_A UPF3X; nonsense mediate 97.0 0.0035 1.2E-07 46.9 8.5 66 5-70 2-73 (91)
214 3p3d_A Nucleoporin 53; structu 96.9 0.0011 3.7E-08 53.0 5.4 75 4-79 7-98 (132)
215 3pq1_A Poly(A) RNA polymerase; 96.6 0.0013 4.4E-08 62.3 3.7 63 4-69 53-115 (464)
216 3ctr_A Poly(A)-specific ribonu 95.3 0.034 1.2E-06 42.4 5.9 52 7-63 8-60 (101)
217 1whv_A Poly(A)-specific ribonu 95.3 0.031 1.1E-06 42.5 5.6 50 7-61 18-67 (100)
218 2l08_A Regulator of nonsense t 94.7 0.031 1E-06 42.3 4.2 66 5-70 10-81 (97)
219 2kn4_A Immunoglobulin G-bindin 89.7 0.29 1E-05 37.8 3.9 42 33-74 2-45 (158)
220 2i2y_A Fusion protein consists 87.8 0.37 1.3E-05 37.1 3.3 43 36-79 5-50 (150)
221 3d45_A Poly(A)-specific ribonu 85.6 1.7 5.9E-05 41.1 7.2 53 5-63 441-494 (507)
222 4e8u_A Putative uncharacterize 68.7 11 0.00036 31.1 6.2 58 6-63 14-83 (172)
223 3j21_T 50S ribosomal protein L 53.5 27 0.00091 25.4 5.4 54 6-59 24-80 (86)
224 3ezj_A General secretion pathw 48.5 5 0.00017 33.6 0.8 69 12-80 9-87 (241)
225 2g0c_A ATP-dependent RNA helic 35.6 15 0.0005 25.0 1.5 58 14-77 11-74 (76)
226 1smz_A Transportan in bicellar 33.0 15 0.00052 21.1 1.0 21 129-149 5-25 (27)
227 4ar0_A Type IV pilus biogenesi 29.5 11 0.00037 29.1 -0.1 64 15-78 37-105 (128)
228 1vq8_S 50S ribosomal protein L 28.6 1.4E+02 0.0047 21.4 5.8 50 6-55 23-74 (85)
229 1yo3_A Dynein light chain 1; s 26.0 57 0.0019 24.2 3.4 31 139-169 34-65 (102)
230 3rjs_A Dynein light chain moto 22.6 76 0.0026 22.7 3.4 34 137-170 19-53 (89)
231 2y3m_A Emhofq, protein transpo 21.8 25 0.00084 27.6 0.7 65 15-79 11-80 (175)
No 1
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.77 E-value=2.1e-18 Score=130.22 Aligned_cols=76 Identities=22% Similarity=0.361 Sum_probs=70.0
Q ss_pred CccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCC---CCcEEEEEEcChHHHHHHH-hhcCCeecceEEEEeeCC
Q 027228 3 QTRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYG---QSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPAE 78 (226)
Q Consensus 3 ~~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~~---~~~~A~V~F~~~~aa~tAl-~Lng~~l~gr~I~V~~a~ 78 (226)
++++|||+|||+.+|+++|+++|+.||+|.+|+|.+++. ..|||||+|.++++|..|+ .|||..|+|+.|.|..+.
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~Ak 97 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR 97 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence 467999999999999999999999999999999998863 3579999999999999999 599999999999998764
No 2
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.73 E-value=2.2e-17 Score=119.82 Aligned_cols=76 Identities=22% Similarity=0.387 Sum_probs=70.9
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecC---CCCcEEEEEEcChHHHHHHHhhcCCeecceEEEEeeCCC
Q 027228 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREY---GQSKTAFVTFKDAKALEIALLLSGATIVDQIVSITPAEN 79 (226)
Q Consensus 4 ~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~---~~~~~A~V~F~~~~aa~tAl~Lng~~l~gr~I~V~~a~~ 79 (226)
.++|||+|||+.+|+++|+++|+.||+|.++.+..+. ...++|||+|.+++++..|+.|||..|.|+.|.|.++..
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHGGGTTCEETTEECEEEETTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHhcCCCEECCcEEEEEEccC
Confidence 5899999999999999999999999999999999885 246899999999999999999999999999999998754
No 3
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.73 E-value=1.2e-17 Score=128.57 Aligned_cols=77 Identities=19% Similarity=0.300 Sum_probs=70.9
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCC-CCcEEEEEEcChHHHHHHH-hhcCCeecceEEEEeeCCCC
Q 027228 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYG-QSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPAENY 80 (226)
Q Consensus 4 ~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~~-~~~~A~V~F~~~~aa~tAl-~Lng~~l~gr~I~V~~a~~~ 80 (226)
..+|||+|||+.+|+++|+++|+.||+|.+|+|+++.+ ..+||||+|+++++|..|+ .|||..|.|+.|.|..+...
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~ 83 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 83 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCC
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCc
Confidence 46899999999999999999999999999999999874 3579999999999999999 69999999999999987653
No 4
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.72 E-value=2.9e-17 Score=119.18 Aligned_cols=75 Identities=17% Similarity=0.262 Sum_probs=69.1
Q ss_pred CccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCC---CCcEEEEEEcChHHHHHHHhhcCCeecceEEEEeeC
Q 027228 3 QTRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYG---QSKTAFVTFKDAKALEIALLLSGATIVDQIVSITPA 77 (226)
Q Consensus 3 ~~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~~---~~~~A~V~F~~~~aa~tAl~Lng~~l~gr~I~V~~a 77 (226)
..++|||+|||+.+|+++|+++|+.||+|.+|.|..++. ..++|||+|.+++++..|+.++|..|+|+.|.|..+
T Consensus 10 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~v~~A 87 (87)
T 3s7r_A 10 DAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKKA 87 (87)
T ss_dssp CTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHSSCEEETTEEEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHhCCCEECCEEEEEEeC
Confidence 358999999999999999999999999999999998853 367999999999999999999999999999999864
No 5
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.72 E-value=5.8e-18 Score=125.58 Aligned_cols=77 Identities=18% Similarity=0.233 Sum_probs=68.0
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCC-ceeEEEEEecC---CCCcEEEEEEcChHHHHHHHh-h-cCCeecceEEEEeeC
Q 027228 4 TRTVQVKNVSDLAHEREIHEFFSFSG-DIERIEILREY---GQSKTAFVTFKDAKALEIALL-L-SGATIVDQIVSITPA 77 (226)
Q Consensus 4 ~~tV~V~NLs~~tTe~~L~efFs~cG-~I~sI~i~~d~---~~~~~A~V~F~~~~aa~tAl~-L-ng~~l~gr~I~V~~a 77 (226)
+++|||+|||+.+||++|+++|+.|| +|.+|+|++++ ...|||||+|.++++|..|+. | ++..|+|++|.|..+
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 46999999999999999999999999 89999999875 346899999999999999994 5 456799999999876
Q ss_pred CCC
Q 027228 78 ENY 80 (226)
Q Consensus 78 ~~~ 80 (226)
..-
T Consensus 81 ~~~ 83 (91)
T 2lxi_A 81 DPK 83 (91)
T ss_dssp CSC
T ss_pred CCC
Confidence 543
No 6
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=5e-18 Score=129.44 Aligned_cols=77 Identities=19% Similarity=0.282 Sum_probs=71.4
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCC--CCcEEEEEEcChHHHHHHHhhcCCeecceEEEEeeCCCC
Q 027228 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYG--QSKTAFVTFKDAKALEIALLLSGATIVDQIVSITPAENY 80 (226)
Q Consensus 4 ~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~~--~~~~A~V~F~~~~aa~tAl~Lng~~l~gr~I~V~~a~~~ 80 (226)
.++|||+|||+.+|+++|+++|+.||+|.+|.|+++.. ..|||||+|+++++|..|+.+||..|+|+.|.|..+.+|
T Consensus 11 ~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~~~~~~~~gr~l~V~~~~~~ 89 (103)
T 1s79_A 11 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKDDY 89 (103)
T ss_dssp GGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHTSSCCCCTTTTCEEEEHHHH
T ss_pred CCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHHcCCCEECCEEEEEEEchHH
Confidence 58999999999999999999999999999999998763 468999999999999999999999999999999876554
No 7
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.71 E-value=4.5e-17 Score=116.71 Aligned_cols=76 Identities=13% Similarity=0.141 Sum_probs=69.7
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCC---CCcEEEEEEcChHHHHHHHh-hcCCeecceEEEEeeCCC
Q 027228 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYG---QSKTAFVTFKDAKALEIALL-LSGATIVDQIVSITPAEN 79 (226)
Q Consensus 4 ~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~~---~~~~A~V~F~~~~aa~tAl~-Lng~~l~gr~I~V~~a~~ 79 (226)
+.+|||+|||+.+++++|+++|+.||+|.++.+..++. ..++|||+|.++++|..|+. |||..|+|+.|.|..+..
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 36899999999999999999999999999999998852 36899999999999999995 999999999999998754
No 8
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.71 E-value=3.8e-17 Score=125.75 Aligned_cols=76 Identities=17% Similarity=0.224 Sum_probs=70.4
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCC---CCcEEEEEEcChHHHHHHH-hhcCCeecceEEEEeeCCC
Q 027228 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYG---QSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPAEN 79 (226)
Q Consensus 4 ~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~~---~~~~A~V~F~~~~aa~tAl-~Lng~~l~gr~I~V~~a~~ 79 (226)
.++|||+|||+.+++++|+++|+.||+|.+|.|+.+.. ..|||||+|+++++|+.|+ .|||..|.|+.|.|..+..
T Consensus 6 ~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a~~ 85 (110)
T 3s8s_A 6 LKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLDIK 85 (110)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECST
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 57999999999999999999999999999999999863 3689999999999999999 5999999999999987743
No 9
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.71 E-value=3.2e-17 Score=117.98 Aligned_cols=75 Identities=23% Similarity=0.365 Sum_probs=69.5
Q ss_pred CccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCC---CCcEEEEEEcChHHHHHHH-hhcCCeecceEEEEeeC
Q 027228 3 QTRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYG---QSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPA 77 (226)
Q Consensus 3 ~~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~~---~~~~A~V~F~~~~aa~tAl-~Lng~~l~gr~I~V~~a 77 (226)
..++|||+|||+.+++++|+++|+.||+|.+|.+..++. ..++|||+|+++++|..|+ .|||..|+|+.|.|..+
T Consensus 6 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 6 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp CSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 468999999999999999999999999999999988752 3689999999999999999 79999999999999875
No 10
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=4.1e-17 Score=121.39 Aligned_cols=78 Identities=19% Similarity=0.207 Sum_probs=72.0
Q ss_pred CccEEEEeCCCCcccHHHHH----HHcccCCceeEEEEEecCCCCcEEEEEEcChHHHHHHHh-hcCCeecceEEEEeeC
Q 027228 3 QTRTVQVKNVSDLAHEREIH----EFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIALL-LSGATIVDQIVSITPA 77 (226)
Q Consensus 3 ~~~tV~V~NLs~~tTe~~L~----efFs~cG~I~sI~i~~d~~~~~~A~V~F~~~~aa~tAl~-Lng~~l~gr~I~V~~a 77 (226)
..++|||+|||+.+++++|+ ++|+.||+|.+|.|..+....+||||+|+++++|..|+. |||..|+|+.|.|..+
T Consensus 8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~a 87 (96)
T 2dgx_A 8 NGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVSLA 87 (96)
T ss_dssp SCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEc
Confidence 46799999999999999999 999999999999999887557899999999999999995 9999999999999987
Q ss_pred CCC
Q 027228 78 ENY 80 (226)
Q Consensus 78 ~~~ 80 (226)
...
T Consensus 88 ~~~ 90 (96)
T 2dgx_A 88 TGA 90 (96)
T ss_dssp CCS
T ss_pred CCC
Confidence 543
No 11
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1e-16 Score=119.81 Aligned_cols=79 Identities=20% Similarity=0.314 Sum_probs=72.2
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCC-CCcEEEEEEcChHHHHHHH-hhcCCeecceEEEEeeCCCCC
Q 027228 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYG-QSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPAENYV 81 (226)
Q Consensus 4 ~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~~-~~~~A~V~F~~~~aa~tAl-~Lng~~l~gr~I~V~~a~~~~ 81 (226)
.++|||+|||+.+|+++|+++|+.||+|.+|.|..+.. ..++|||+|.++++|..|+ .|||..|+|+.|.|..+....
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 94 (103)
T 2cq3_A 15 PKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARV 94 (103)
T ss_dssp CCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCSSC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEcccCC
Confidence 58999999999999999999999999999999998863 4689999999999999999 499999999999999876544
Q ss_pred C
Q 027228 82 P 82 (226)
Q Consensus 82 ~ 82 (226)
.
T Consensus 95 ~ 95 (103)
T 2cq3_A 95 M 95 (103)
T ss_dssp C
T ss_pred C
Confidence 3
No 12
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=7.3e-17 Score=119.85 Aligned_cols=78 Identities=19% Similarity=0.315 Sum_probs=71.9
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCC---CCcEEEEEEcChHHHHHHHhhcCCeecceEEEEeeCCCC
Q 027228 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYG---QSKTAFVTFKDAKALEIALLLSGATIVDQIVSITPAENY 80 (226)
Q Consensus 4 ~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~~---~~~~A~V~F~~~~aa~tAl~Lng~~l~gr~I~V~~a~~~ 80 (226)
.++|||+|||+.+++++|+++|+.||+|.+|.|..+.. ..+||||+|+++++|..|+.|||..|.|+.|.|..+...
T Consensus 10 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~l~V~~a~~~ 89 (99)
T 2dgs_A 10 SNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEPR 89 (99)
T ss_dssp CCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHHHCCCBSSSCBCEEEECCCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence 58999999999999999999999999999999998752 468999999999999999999999999999999987654
Q ss_pred C
Q 027228 81 V 81 (226)
Q Consensus 81 ~ 81 (226)
.
T Consensus 90 ~ 90 (99)
T 2dgs_A 90 D 90 (99)
T ss_dssp C
T ss_pred c
Confidence 3
No 13
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.71 E-value=5.1e-17 Score=117.42 Aligned_cols=75 Identities=25% Similarity=0.329 Sum_probs=69.8
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCC----CCcEEEEEEcChHHHHHHHh-hcCCeecceEEEEeeCC
Q 027228 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYG----QSKTAFVTFKDAKALEIALL-LSGATIVDQIVSITPAE 78 (226)
Q Consensus 4 ~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~~----~~~~A~V~F~~~~aa~tAl~-Lng~~l~gr~I~V~~a~ 78 (226)
.++|||+|||+.+|+++|+++|+.||+|.++.+..+.. ..++|||+|.++++|..|+. |||..|+|+.|.|..+.
T Consensus 4 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 83 (88)
T 4a8x_A 4 PTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAVL 83 (88)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEECC
Confidence 57999999999999999999999999999999998863 47899999999999999995 99999999999999764
No 14
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.70 E-value=5.3e-17 Score=119.35 Aligned_cols=75 Identities=23% Similarity=0.402 Sum_probs=69.5
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCC--CCcEEEEEEcChHHHHHHHh-hcCCeecceEEEEeeCC
Q 027228 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYG--QSKTAFVTFKDAKALEIALL-LSGATIVDQIVSITPAE 78 (226)
Q Consensus 4 ~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~~--~~~~A~V~F~~~~aa~tAl~-Lng~~l~gr~I~V~~a~ 78 (226)
.++|||+|||+.+++++|+++|+.||+|.+|.|..+.. ..++|||+|+++++|..|+. |||..|.|+.|.|..+.
T Consensus 16 ~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 93 (95)
T 2ywk_A 16 DRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGPS 93 (95)
T ss_dssp GGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEcC
Confidence 58999999999999999999999999999999998863 35799999999999999995 99999999999998764
No 15
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.70 E-value=4.9e-17 Score=117.50 Aligned_cols=77 Identities=18% Similarity=0.190 Sum_probs=69.3
Q ss_pred CccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCC---CCcEEEEEEcChHHHHHHHh-hcCCeecceEEEEeeCC
Q 027228 3 QTRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYG---QSKTAFVTFKDAKALEIALL-LSGATIVDQIVSITPAE 78 (226)
Q Consensus 3 ~~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~~---~~~~A~V~F~~~~aa~tAl~-Lng~~l~gr~I~V~~a~ 78 (226)
..++|||+|||+.+++++|+++|+.||+|.+|.+..+.. ..++|||+|.++++|..|+. |||..|+|+.|.|..+.
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 84 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT 84 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecC
Confidence 467999999999999999999999999999999998752 35799999999999999995 99999999999998764
Q ss_pred C
Q 027228 79 N 79 (226)
Q Consensus 79 ~ 79 (226)
.
T Consensus 85 ~ 85 (87)
T 3bs9_A 85 R 85 (87)
T ss_dssp -
T ss_pred C
Confidence 3
No 16
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.70 E-value=1.7e-17 Score=117.27 Aligned_cols=72 Identities=17% Similarity=0.248 Sum_probs=66.8
Q ss_pred EEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCC---CCcEEEEEEcChHHHHHHHhhcCCeecceEEEEeeC
Q 027228 6 TVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYG---QSKTAFVTFKDAKALEIALLLSGATIVDQIVSITPA 77 (226)
Q Consensus 6 tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~~---~~~~A~V~F~~~~aa~tAl~Lng~~l~gr~I~V~~a 77 (226)
+|||+|||+.+++++|+++|+.||+|.+|.+..++. ..++|||+|.++++++.|+.|||..|+|+.|.|..+
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHSSSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHCCCCEECCEEEEEEeC
Confidence 489999999999999999999999999999998752 468999999999999999999999999999999764
No 17
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=7.6e-17 Score=119.54 Aligned_cols=80 Identities=19% Similarity=0.249 Sum_probs=72.6
Q ss_pred CccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecC---CCCcEEEEEEcChHHHHHHH-hhcCCeecceEEEEeeCC
Q 027228 3 QTRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREY---GQSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPAE 78 (226)
Q Consensus 3 ~~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~---~~~~~A~V~F~~~~aa~tAl-~Lng~~l~gr~I~V~~a~ 78 (226)
..++|||+|||+.+|+++|+++|+.||+|.+|.|..+. ...++|||+|.++++|..|+ .|||..|.|+.|.|..+.
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 86 (99)
T 1whw_A 7 GSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPST 86 (99)
T ss_dssp SCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 35899999999999999999999999999999999875 24689999999999999999 799999999999999886
Q ss_pred CCCC
Q 027228 79 NYVP 82 (226)
Q Consensus 79 ~~~~ 82 (226)
....
T Consensus 87 ~~~~ 90 (99)
T 1whw_A 87 IKKE 90 (99)
T ss_dssp CCST
T ss_pred CCcc
Confidence 6543
No 18
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=9.8e-17 Score=119.96 Aligned_cols=77 Identities=26% Similarity=0.313 Sum_probs=71.4
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCC-CCcEEEEEEcChHHHHHHHh-hcCCeecceEEEEeeCCCC
Q 027228 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYG-QSKTAFVTFKDAKALEIALL-LSGATIVDQIVSITPAENY 80 (226)
Q Consensus 4 ~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~~-~~~~A~V~F~~~~aa~tAl~-Lng~~l~gr~I~V~~a~~~ 80 (226)
.++|||+|||+.+++++|+++|+.||+|.+|.|..+.. ..+||||+|.++++|..|+. |||..|.|+.|.|..+...
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 93 (103)
T 2cqi_A 15 PRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTP 93 (103)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCT
T ss_pred CCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEECCCC
Confidence 58999999999999999999999999999999998863 46899999999999999995 9999999999999987654
No 19
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.69 E-value=1.9e-16 Score=120.54 Aligned_cols=80 Identities=19% Similarity=0.222 Sum_probs=72.6
Q ss_pred CccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCC---CCcEEEEEEcChHHHHHHH-hhcCCeecceEEEEeeCC
Q 027228 3 QTRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYG---QSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPAE 78 (226)
Q Consensus 3 ~~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~~---~~~~A~V~F~~~~aa~tAl-~Lng~~l~gr~I~V~~a~ 78 (226)
..++|||+|||+.+|+++|+++|+.||.|.+|.|..+.. ..+||||+|.++++|..|+ .|||..|+|+.|.|..+.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 93 (115)
T 2dgo_A 14 NHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT 93 (115)
T ss_dssp TCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEESS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEcc
Confidence 368999999999999999999999999999999998852 3579999999999999999 599999999999999887
Q ss_pred CCCC
Q 027228 79 NYVP 82 (226)
Q Consensus 79 ~~~~ 82 (226)
....
T Consensus 94 ~~~~ 97 (115)
T 2dgo_A 94 RKPP 97 (115)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 6544
No 20
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=1.3e-16 Score=117.19 Aligned_cols=80 Identities=18% Similarity=0.274 Sum_probs=72.5
Q ss_pred CccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCC---CCcEEEEEEcChHHHHHHHh-hcCCeecceEEEEeeCC
Q 027228 3 QTRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYG---QSKTAFVTFKDAKALEIALL-LSGATIVDQIVSITPAE 78 (226)
Q Consensus 3 ~~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~~---~~~~A~V~F~~~~aa~tAl~-Lng~~l~gr~I~V~~a~ 78 (226)
..++|||+|||+.+|+++|+++|+.||+|.+|.+..+.. ..++|||+|+++++|..|+. |||..|.|+.|.|..+.
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 83 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVT 83 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEESS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEcc
Confidence 468999999999999999999999999999999998752 46799999999999999995 99999999999999886
Q ss_pred CCCC
Q 027228 79 NYVP 82 (226)
Q Consensus 79 ~~~~ 82 (226)
....
T Consensus 84 ~~~~ 87 (95)
T 2dnz_A 84 ERLD 87 (95)
T ss_dssp CCCC
T ss_pred cccC
Confidence 5433
No 21
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.2e-16 Score=120.77 Aligned_cols=77 Identities=21% Similarity=0.239 Sum_probs=71.7
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCCCCcEEEEEEcChHHHHHHH-hhcCCeecceEEEEeeCCCC
Q 027228 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPAENY 80 (226)
Q Consensus 4 ~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~~~~~~A~V~F~~~~aa~tAl-~Lng~~l~gr~I~V~~a~~~ 80 (226)
.++|||+|||+.+|+++|+++|+.||+|.+|.|..+....+||||+|+++++|..|+ .|||..|.|+.|.|..+...
T Consensus 22 ~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 99 (109)
T 1x4a_A 22 DCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSG 99 (109)
T ss_dssp SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCCCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcccC
Confidence 579999999999999999999999999999999877666889999999999999999 79999999999999987554
No 22
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.69 E-value=1.8e-17 Score=121.78 Aligned_cols=77 Identities=17% Similarity=0.213 Sum_probs=66.0
Q ss_pred cEEEEeCCCCcccHHHHHHHcccCC--ceeEEEEEecCC---CCcEEEEEEcChHHHHHHH-hhcCCeecceEEEEeeCC
Q 027228 5 RTVQVKNVSDLAHEREIHEFFSFSG--DIERIEILREYG---QSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPAE 78 (226)
Q Consensus 5 ~tV~V~NLs~~tTe~~L~efFs~cG--~I~sI~i~~d~~---~~~~A~V~F~~~~aa~tAl-~Lng~~l~gr~I~V~~a~ 78 (226)
.+|||+|||+.+|+++|+++|+.|| +|.++.+..+.. ..|||||+|.++++|+.|+ .|||..|+|+.|.|..+.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 5899999999999999999999999 999999999852 3679999999999999999 699999999999998876
Q ss_pred CCC
Q 027228 79 NYV 81 (226)
Q Consensus 79 ~~~ 81 (226)
...
T Consensus 82 ~~~ 84 (90)
T 3p5t_L 82 KLE 84 (90)
T ss_dssp ---
T ss_pred CCc
Confidence 543
No 23
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1e-16 Score=117.61 Aligned_cols=75 Identities=21% Similarity=0.279 Sum_probs=69.4
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCC---CCcEEEEEEcChHHHHHHHh-hcCCeecceEEEEeeCC
Q 027228 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYG---QSKTAFVTFKDAKALEIALL-LSGATIVDQIVSITPAE 78 (226)
Q Consensus 4 ~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~~---~~~~A~V~F~~~~aa~tAl~-Lng~~l~gr~I~V~~a~ 78 (226)
.++|||+|||+.+++++|+++|+.||+|.+|.+..++. ..++|||+|+++++|..|+. |||..|+|+.|.|..+.
T Consensus 15 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 93 (95)
T 2cqc_A 15 NCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSGPS 93 (95)
T ss_dssp GGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCS
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEecC
Confidence 57999999999999999999999999999999998863 35799999999999999995 99999999999998764
No 24
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.69 E-value=1.1e-16 Score=117.06 Aligned_cols=79 Identities=16% Similarity=0.193 Sum_probs=71.5
Q ss_pred CccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCC-CCcEEEEEEcChHHHHHHHh-hcCCeecceEEEEeeCCCC
Q 027228 3 QTRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYG-QSKTAFVTFKDAKALEIALL-LSGATIVDQIVSITPAENY 80 (226)
Q Consensus 3 ~~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~~-~~~~A~V~F~~~~aa~tAl~-Lng~~l~gr~I~V~~a~~~ 80 (226)
..++|||+|||+.+++++|+++|+.||+|.+|.|..+.+ ..++|||+|.++++|..|+. |||..|+|+.|.|..+...
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 86 (92)
T 2dgv_A 7 GACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDRNA 86 (92)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECSCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCC
Confidence 468999999999999999999999999999999998653 36899999999999999995 9999999999999987654
Q ss_pred C
Q 027228 81 V 81 (226)
Q Consensus 81 ~ 81 (226)
.
T Consensus 87 ~ 87 (92)
T 2dgv_A 87 S 87 (92)
T ss_dssp S
T ss_pred C
Confidence 3
No 25
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.2e-16 Score=117.73 Aligned_cols=79 Identities=19% Similarity=0.271 Sum_probs=71.7
Q ss_pred CccEEEEeCCCCcccHHHHHHHcccCCceeEE-EEEecC---CCCcEEEEEEcChHHHHHHHh-hcCCeecceEEEEeeC
Q 027228 3 QTRTVQVKNVSDLAHEREIHEFFSFSGDIERI-EILREY---GQSKTAFVTFKDAKALEIALL-LSGATIVDQIVSITPA 77 (226)
Q Consensus 3 ~~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI-~i~~d~---~~~~~A~V~F~~~~aa~tAl~-Lng~~l~gr~I~V~~a 77 (226)
..++|||+|||+.+|+++|+++|+.||+|.++ .|..+. ...++|||+|+++++|..|+. |||..|.|+.|.|..+
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 83 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 46899999999999999999999999999999 998874 246899999999999999995 9999999999999987
Q ss_pred CCCC
Q 027228 78 ENYV 81 (226)
Q Consensus 78 ~~~~ 81 (226)
....
T Consensus 84 ~~~~ 87 (96)
T 1x5t_A 84 FKKD 87 (96)
T ss_dssp CCCC
T ss_pred cccC
Confidence 6543
No 26
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.68 E-value=6.5e-17 Score=125.25 Aligned_cols=75 Identities=13% Similarity=0.221 Sum_probs=69.7
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCc---eeEEEEEecCC--CCcEEEEEEcChHHHHHHHhhcCCeecceEEEEeeCC
Q 027228 4 TRTVQVKNVSDLAHEREIHEFFSFSGD---IERIEILREYG--QSKTAFVTFKDAKALEIALLLSGATIVDQIVSITPAE 78 (226)
Q Consensus 4 ~~tV~V~NLs~~tTe~~L~efFs~cG~---I~sI~i~~d~~--~~~~A~V~F~~~~aa~tAl~Lng~~l~gr~I~V~~a~ 78 (226)
.++|||+|||+.+|+++|++||+.||. |.+|+|..+.. ..+||||+|+++++++.||.|||..|+||.|.|..+.
T Consensus 17 ~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V~~a~ 96 (118)
T 2db1_A 17 GYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALKKDRESMGHRYIEVFKSH 96 (118)
T ss_dssp CCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGGGTTEEETTEEEEEEEEC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECC
Confidence 579999999999999999999999999 99999998763 3679999999999999999999999999999998764
No 27
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.68 E-value=1.4e-16 Score=117.87 Aligned_cols=78 Identities=18% Similarity=0.250 Sum_probs=71.4
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecC---CCCcEEEEEEcChHHHHHHH-hhcCCeecceEEEEeeCCC
Q 027228 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREY---GQSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPAEN 79 (226)
Q Consensus 4 ~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~---~~~~~A~V~F~~~~aa~tAl-~Lng~~l~gr~I~V~~a~~ 79 (226)
+++|||+|||+.+++++|+++|+.||+|.+|.|..+. ...++|||+|.++++|..|+ .|||..|+|+.|.|..+..
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 4799999999999999999999999999999999885 23689999999999999999 6999999999999998765
Q ss_pred CC
Q 027228 80 YV 81 (226)
Q Consensus 80 ~~ 81 (226)
-.
T Consensus 82 ~~ 83 (96)
T 2x1f_A 82 SD 83 (96)
T ss_dssp SS
T ss_pred CC
Confidence 43
No 28
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.6e-16 Score=119.18 Aligned_cols=77 Identities=22% Similarity=0.266 Sum_probs=70.7
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCC----CCcEEEEEEcChHHHHHHHhhcCCeecceEEEEeeCCC
Q 027228 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYG----QSKTAFVTFKDAKALEIALLLSGATIVDQIVSITPAEN 79 (226)
Q Consensus 4 ~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~~----~~~~A~V~F~~~~aa~tAl~Lng~~l~gr~I~V~~a~~ 79 (226)
.++|||+|||+.+|+++|+++|+.|| |.+|.|..+.. ..+||||+|.++++|..||.|||..|.|+.|.|..+..
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~~ 93 (104)
T 1wi8_A 15 PYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNKRIRVDVADQ 93 (104)
T ss_dssp CEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHHGGGTCEETTEECEEEECCC
T ss_pred CCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHHhcCCCEeCCcEEEEEEccC
Confidence 57999999999999999999999999 99999998853 36799999999999999999999999999999998765
Q ss_pred CC
Q 027228 80 YV 81 (226)
Q Consensus 80 ~~ 81 (226)
..
T Consensus 94 ~~ 95 (104)
T 1wi8_A 94 AQ 95 (104)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 29
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=1e-16 Score=123.83 Aligned_cols=74 Identities=19% Similarity=0.311 Sum_probs=68.7
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecC--CCCcEEEEEEcChHHHHHHHhhcCCeecceEEEEeeCC
Q 027228 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREY--GQSKTAFVTFKDAKALEIALLLSGATIVDQIVSITPAE 78 (226)
Q Consensus 4 ~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~--~~~~~A~V~F~~~~aa~tAl~Lng~~l~gr~I~V~~a~ 78 (226)
.++|||+|||+++|+++|++||+.| +|.+|.|+.+. ...|||||+|+++++++.||.|||..|+||.|.|.++.
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~a~ 91 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRMLMIQRYVEVSPAT 91 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHHHTTTEEETTEEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECC
Confidence 4699999999999999999999999 89999999876 34789999999999999999999999999999998874
No 30
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.68 E-value=6.1e-17 Score=122.13 Aligned_cols=75 Identities=17% Similarity=0.247 Sum_probs=67.7
Q ss_pred cEEEEeCCCCcccHHHHHHHcccCCc--eeEEEEEecCC---CCcEEEEEEcChHHHHHHH-hhcCC----eecceEEEE
Q 027228 5 RTVQVKNVSDLAHEREIHEFFSFSGD--IERIEILREYG---QSKTAFVTFKDAKALEIAL-LLSGA----TIVDQIVSI 74 (226)
Q Consensus 5 ~tV~V~NLs~~tTe~~L~efFs~cG~--I~sI~i~~d~~---~~~~A~V~F~~~~aa~tAl-~Lng~----~l~gr~I~V 74 (226)
.||||+|||+.+|+++|+++|+.||+ |.+|++++|+. ..|||||+|.++++|..|+ .|||. .|+||+|.|
T Consensus 10 ~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i~V 89 (95)
T 2lkz_A 10 DTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTIGV 89 (95)
T ss_dssp CEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEEEE
T ss_pred CEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEEEE
Confidence 69999999999999999999999995 67999998863 4689999999999999999 69998 499999999
Q ss_pred eeCCC
Q 027228 75 TPAEN 79 (226)
Q Consensus 75 ~~a~~ 79 (226)
..+.+
T Consensus 90 ~~Aks 94 (95)
T 2lkz_A 90 DFAKS 94 (95)
T ss_dssp EECCC
T ss_pred EEccC
Confidence 98754
No 31
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.6e-16 Score=118.77 Aligned_cols=78 Identities=24% Similarity=0.356 Sum_probs=71.2
Q ss_pred CccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCC---CCcEEEEEEcChHHHHHHHh-hcCCeecceEEEEeeCC
Q 027228 3 QTRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYG---QSKTAFVTFKDAKALEIALL-LSGATIVDQIVSITPAE 78 (226)
Q Consensus 3 ~~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~~---~~~~A~V~F~~~~aa~tAl~-Lng~~l~gr~I~V~~a~ 78 (226)
..++|||+|||+.+++++|+++|+.||+|.+|.|..+.. ..++|||+|.++++|..|+. |||..|.|+.|.|..+.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 93 (103)
T 2cq0_A 14 DNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWAK 93 (103)
T ss_dssp SSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEECC
Confidence 368999999999999999999999999999999998752 35799999999999999995 99999999999999875
Q ss_pred CC
Q 027228 79 NY 80 (226)
Q Consensus 79 ~~ 80 (226)
..
T Consensus 94 ~~ 95 (103)
T 2cq0_A 94 PS 95 (103)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 32
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=1.3e-16 Score=116.96 Aligned_cols=74 Identities=18% Similarity=0.323 Sum_probs=68.8
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCC---CCcEEEEEEcChHHHHHHH-hhcCCeecceEEEEeeC
Q 027228 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYG---QSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPA 77 (226)
Q Consensus 4 ~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~~---~~~~A~V~F~~~~aa~tAl-~Lng~~l~gr~I~V~~a 77 (226)
.++|||+|||+.+++++|+++|+.||+|.+|.+..++. ..++|||+|+++++|..|+ .|||..|.|+.|.|..+
T Consensus 16 ~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 93 (94)
T 2e5h_A 16 KSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASIA 93 (94)
T ss_dssp TTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEEC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEec
Confidence 57999999999999999999999999999999998753 4689999999999999999 69999999999999865
No 33
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.68 E-value=6.7e-17 Score=121.44 Aligned_cols=75 Identities=11% Similarity=0.142 Sum_probs=69.9
Q ss_pred ccEEEEeCCCC------cccHHHHHHHcccCCceeEEEEEecCC---CCcEEEEEEcChHHHHHHH-hhcCCeecc-eEE
Q 027228 4 TRTVQVKNVSD------LAHEREIHEFFSFSGDIERIEILREYG---QSKTAFVTFKDAKALEIAL-LLSGATIVD-QIV 72 (226)
Q Consensus 4 ~~tV~V~NLs~------~tTe~~L~efFs~cG~I~sI~i~~d~~---~~~~A~V~F~~~~aa~tAl-~Lng~~l~g-r~I 72 (226)
.++|||+|||+ .+++++|+++|+.||+|.+|+|+.++. ..|||||+|.++++|..|+ .|||..|.| +.|
T Consensus 6 ~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~l 85 (100)
T 3ns6_A 6 DQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHRL 85 (100)
T ss_dssp GGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCBC
T ss_pred CcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeEE
Confidence 58999999999 999999999999999999999998874 3689999999999999999 699999999 999
Q ss_pred EEeeCC
Q 027228 73 SITPAE 78 (226)
Q Consensus 73 ~V~~a~ 78 (226)
.|..+.
T Consensus 86 ~V~~a~ 91 (100)
T 3ns6_A 86 FLYTMK 91 (100)
T ss_dssp EEEESH
T ss_pred EEEECc
Confidence 998764
No 34
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.68 E-value=1.3e-16 Score=121.43 Aligned_cols=76 Identities=20% Similarity=0.268 Sum_probs=71.3
Q ss_pred CccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCCCCcEEEEEEcChHHHHHHHh-hcCCeecceEEEEeeCC
Q 027228 3 QTRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIALL-LSGATIVDQIVSITPAE 78 (226)
Q Consensus 3 ~~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~~~~~~A~V~F~~~~aa~tAl~-Lng~~l~gr~I~V~~a~ 78 (226)
..++|||+|||+.+|+++|+++|+.||.|.+|.|..++...++|||+|.++++|..|+. |||..|+|+.|.|..+.
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 83 (115)
T 3lqv_A 7 VNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYN 83 (115)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEec
Confidence 36899999999999999999999999999999999887778999999999999999995 99999999999998764
No 35
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=8.8e-17 Score=121.85 Aligned_cols=77 Identities=19% Similarity=0.164 Sum_probs=69.0
Q ss_pred CccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCC--CCcEEEEEEcChHHHHHHHhhcCCeecceEEEEeeCCCC
Q 027228 3 QTRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYG--QSKTAFVTFKDAKALEIALLLSGATIVDQIVSITPAENY 80 (226)
Q Consensus 3 ~~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~~--~~~~A~V~F~~~~aa~tAl~Lng~~l~gr~I~V~~a~~~ 80 (226)
+.++|||+|||+.+||++|++||+.||. .+|.|+.++. ..+||||+|+++++|+.||.+|+..|+||.|.|.++...
T Consensus 14 ~~~~l~V~nLp~~~te~~l~~~F~~~G~-~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~~~~~ 92 (102)
T 1wez_A 14 TGHCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVELFLNSTA 92 (102)
T ss_dssp SSCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEESSSSCEEEEEEEECSSSHHHHHHHTTSSCCSSSSCCEEEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCc-eEEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEECCCC
Confidence 3579999999999999999999999995 5999998862 357999999999999999999999999999999876543
No 36
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=1.9e-16 Score=117.74 Aligned_cols=76 Identities=13% Similarity=0.315 Sum_probs=70.2
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCC--CCcEEEEEEcChHHHHHHH-hhcCCeecceEEEEeeCCC
Q 027228 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYG--QSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPAEN 79 (226)
Q Consensus 4 ~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~~--~~~~A~V~F~~~~aa~tAl-~Lng~~l~gr~I~V~~a~~ 79 (226)
.++|||+|||+.+|+++|+++|+.||+|.+|.|..+.. ..++|||+|.++++|..|+ .|||..|.|+.|.|..+..
T Consensus 17 ~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 95 (100)
T 2do4_A 17 KHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAISNS 95 (100)
T ss_dssp CSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEECCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCC
Confidence 57999999999999999999999999999999998862 3589999999999999999 7999999999999988754
No 37
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=2.3e-16 Score=116.51 Aligned_cols=76 Identities=20% Similarity=0.245 Sum_probs=66.5
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCCCCcEEEEEEcChHHHHHHHhhcCCeecceEEEEeeCCCCC
Q 027228 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIALLLSGATIVDQIVSITPAENYV 81 (226)
Q Consensus 4 ~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~~~~~~A~V~F~~~~aa~tAl~Lng~~l~gr~I~V~~a~~~~ 81 (226)
.++|||+|||+.+|+++|+++|+.||+|.+| ..+....+||||+|.+++++..|+.|||..|+|+.|.|..+....
T Consensus 8 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~~afV~f~~~~~a~~ai~l~g~~~~g~~l~V~~a~~~~ 83 (94)
T 2e5g_A 8 LRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGVFAIVEMGDVGAREAVLSQSQHSLGGHRLRVRPREQKE 83 (94)
T ss_dssp CCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCCEEEEEESSHHHHHHHHTCSCCEETTEECCCBCSCCSC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCcEEEEEECCHHHHHHHHhcCCeEECCEEEEEEECCcCC
Confidence 5799999999999999999999999999998 333322239999999999999999999999999999998765443
No 38
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.7e-16 Score=120.96 Aligned_cols=76 Identities=20% Similarity=0.326 Sum_probs=70.5
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCC-CCcEEEEEEcChHHHHHHHh-hcCCeecceEEEEeeCCC
Q 027228 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYG-QSKTAFVTFKDAKALEIALL-LSGATIVDQIVSITPAEN 79 (226)
Q Consensus 4 ~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~~-~~~~A~V~F~~~~aa~tAl~-Lng~~l~gr~I~V~~a~~ 79 (226)
.++|||+|||+.+|+++|+++|+.||+|.+|.+..+.+ ..+||||+|.++++|+.|+. |||..|+|+.|.|..+..
T Consensus 29 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 106 (109)
T 2err_A 29 PKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATA 106 (109)
T ss_dssp CCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 68999999999999999999999999999999998863 46899999999999999995 999999999999998754
No 39
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=8.4e-17 Score=123.37 Aligned_cols=77 Identities=10% Similarity=0.073 Sum_probs=70.4
Q ss_pred CccEEEEeCCCCcccHHHHHHHcccCCce-eEEEEEecC--CCCcEEEEEEcChHHHHHHHhhcCCeecceEEEEeeCCC
Q 027228 3 QTRTVQVKNVSDLAHEREIHEFFSFSGDI-ERIEILREY--GQSKTAFVTFKDAKALEIALLLSGATIVDQIVSITPAEN 79 (226)
Q Consensus 3 ~~~tV~V~NLs~~tTe~~L~efFs~cG~I-~sI~i~~d~--~~~~~A~V~F~~~~aa~tAl~Lng~~l~gr~I~V~~a~~ 79 (226)
..++|||+|||+.+|+++|++||+.||.| .+|.|+.+. ...+||||+|+++++|..||.+||..|+|+.|.|..+..
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~v~~a~~ 93 (114)
T 2cpy_A 14 AKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLHRKKLNGREAFVHVVTL 93 (114)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGGCSEEETTEEEEEEEECH
T ss_pred CccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHhCCCccCCeEEEEEECCH
Confidence 35899999999999999999999999999 899999876 246899999999999999998899999999999988743
No 40
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1.4e-16 Score=120.31 Aligned_cols=76 Identities=20% Similarity=0.237 Sum_probs=69.2
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeE-EEEEecC--CCCcEEEEEEcChHHHHHHHhhcCCeecceEEEEeeCCC
Q 027228 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIER-IEILREY--GQSKTAFVTFKDAKALEIALLLSGATIVDQIVSITPAEN 79 (226)
Q Consensus 4 ~~tV~V~NLs~~tTe~~L~efFs~cG~I~s-I~i~~d~--~~~~~A~V~F~~~~aa~tAl~Lng~~l~gr~I~V~~a~~ 79 (226)
.++|||+|||+.+|+++|++||+.||.|.+ |.|+.+. ...+||||+|++++++..||.+||..|+||.|.|.++..
T Consensus 15 ~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~~~~~~~gr~i~v~~~~~ 93 (104)
T 1wg5_A 15 DGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSR 93 (104)
T ss_dssp CCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTTTTCCSSSSCCEEEEECT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHhCcchhCCcEEEEEECCH
Confidence 579999999999999999999999999997 8888774 246899999999999999998899999999999987654
No 41
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=2.8e-16 Score=116.28 Aligned_cols=79 Identities=22% Similarity=0.283 Sum_probs=71.4
Q ss_pred CccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCC------CCcEEEEEEcChHHHHHHHh-hcCCeecceEEEEe
Q 027228 3 QTRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYG------QSKTAFVTFKDAKALEIALL-LSGATIVDQIVSIT 75 (226)
Q Consensus 3 ~~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~~------~~~~A~V~F~~~~aa~tAl~-Lng~~l~gr~I~V~ 75 (226)
..++|||+|||+.+|+++|+++|+.||+|.+|.|..+.. ..++|||+|.++++|..|+. |||..|.|+.|.|.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 83 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVR 83 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 468999999999999999999999999999999998753 25799999999999999995 99999999999999
Q ss_pred eCCCCC
Q 027228 76 PAENYV 81 (226)
Q Consensus 76 ~a~~~~ 81 (226)
.+....
T Consensus 84 ~a~~~~ 89 (98)
T 2cpf_A 84 ISERAT 89 (98)
T ss_dssp CSSCSS
T ss_pred EccCCC
Confidence 875543
No 42
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.67 E-value=3e-16 Score=117.50 Aligned_cols=77 Identities=22% Similarity=0.286 Sum_probs=70.6
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCC---CCcEEEEEEcChHHHHHHHhhcCCeecceEEEEeeCCCC
Q 027228 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYG---QSKTAFVTFKDAKALEIALLLSGATIVDQIVSITPAENY 80 (226)
Q Consensus 4 ~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~~---~~~~A~V~F~~~~aa~tAl~Lng~~l~gr~I~V~~a~~~ 80 (226)
.++|||+|||+.+++++|+++|+.|| |.+|.|..+.. ..+||||+|+++++|..|+.|||..|.|+.|.|..+...
T Consensus 15 ~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~~~ 93 (103)
T 2dng_A 15 PYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTYDGALLGDRSLRVDIAEGR 93 (103)
T ss_dssp CEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHGGGTTCEETTEECEEEECCCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHHhhCCCeECCeEEEEEEecCC
Confidence 57999999999999999999999997 99999998863 357999999999999999999999999999999987654
Q ss_pred C
Q 027228 81 V 81 (226)
Q Consensus 81 ~ 81 (226)
.
T Consensus 94 ~ 94 (103)
T 2dng_A 94 K 94 (103)
T ss_dssp C
T ss_pred C
Confidence 3
No 43
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.67 E-value=1.8e-16 Score=122.18 Aligned_cols=77 Identities=22% Similarity=0.393 Sum_probs=71.0
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecC---CCCcEEEEEEcChHHHHHHHhhcCCeecceEEEEeeCCCC
Q 027228 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREY---GQSKTAFVTFKDAKALEIALLLSGATIVDQIVSITPAENY 80 (226)
Q Consensus 4 ~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~---~~~~~A~V~F~~~~aa~tAl~Lng~~l~gr~I~V~~a~~~ 80 (226)
.++|||+|||+.+|+++|+++|+.||+|.+|.|..+. ...+||||+|.+++++..|+.|||..|+|+.|.|..+...
T Consensus 36 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~~~ 115 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAVAMDETVFRGRTIKVLPKRTN 115 (124)
T ss_dssp HTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHHTTTTCEETTEECEEEESSCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECCCC
Confidence 4799999999999999999999999999999999875 2367999999999999999999999999999999987643
No 44
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=9.8e-17 Score=119.56 Aligned_cols=79 Identities=18% Similarity=0.302 Sum_probs=71.8
Q ss_pred CccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCC---CCcEEEEEEcChHHHHHHH-hhcCCeecceEEEEeeCC
Q 027228 3 QTRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYG---QSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPAE 78 (226)
Q Consensus 3 ~~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~~---~~~~A~V~F~~~~aa~tAl-~Lng~~l~gr~I~V~~a~ 78 (226)
..++|||+|||+.+|+++|+++|+.||+|.+|.|..++. ..++|||+|+++++|..|+ .|||..|.|+.|.|..+.
T Consensus 11 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 90 (102)
T 1x5s_A 11 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAG 90 (102)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 468999999999999999999999999999999998752 4679999999999999999 799999999999999875
Q ss_pred CCC
Q 027228 79 NYV 81 (226)
Q Consensus 79 ~~~ 81 (226)
...
T Consensus 91 ~~~ 93 (102)
T 1x5s_A 91 KSS 93 (102)
T ss_dssp CCC
T ss_pred CCC
Confidence 543
No 45
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.67 E-value=2.4e-16 Score=118.42 Aligned_cols=75 Identities=17% Similarity=0.198 Sum_probs=69.2
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCC--CCcEEEEEEcChHHHHHHHh-hcCCeecceEEEEeeCC
Q 027228 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYG--QSKTAFVTFKDAKALEIALL-LSGATIVDQIVSITPAE 78 (226)
Q Consensus 4 ~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~~--~~~~A~V~F~~~~aa~tAl~-Lng~~l~gr~I~V~~a~ 78 (226)
.++|||+|||+.+|+++|+++|+.||+|.+|.|..+.. ..++|||+|.++++|..|+. |||..|.|+.|.|..+.
T Consensus 29 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 106 (107)
T 3ulh_A 29 GGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVT 106 (107)
T ss_dssp SEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEeC
Confidence 57999999999999999999999999999999998862 35799999999999999995 99999999999998754
No 46
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1.3e-16 Score=121.46 Aligned_cols=75 Identities=20% Similarity=0.438 Sum_probs=69.6
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCC---CCcEEEEEEcChHHHHHHHhhcCCeecceEEEEeeCC
Q 027228 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYG---QSKTAFVTFKDAKALEIALLLSGATIVDQIVSITPAE 78 (226)
Q Consensus 4 ~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~~---~~~~A~V~F~~~~aa~tAl~Lng~~l~gr~I~V~~a~ 78 (226)
.++|||+|||+.+++++|+++|+.||+|.+|.|..+.. ..+||||+|.++++|..|+.|||..|.|+.|.|..+.
T Consensus 25 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~ 102 (114)
T 2cq4_A 25 ARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQ 102 (114)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHHHHTTEEETTEEEEEEEHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHHHcCCCEeCCeEEEEEecC
Confidence 47999999999999999999999999999999998763 3679999999999999999999999999999998653
No 47
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=1.6e-16 Score=118.77 Aligned_cols=79 Identities=22% Similarity=0.234 Sum_probs=71.9
Q ss_pred CccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCC---CCcEEEEEEcChHHHHHHHh-hcCCeecceEEEEeeCC
Q 027228 3 QTRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYG---QSKTAFVTFKDAKALEIALL-LSGATIVDQIVSITPAE 78 (226)
Q Consensus 3 ~~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~~---~~~~A~V~F~~~~aa~tAl~-Lng~~l~gr~I~V~~a~ 78 (226)
..++|||+|||+.+++++|+++|+.||+|.+|.|..+.. ..++|||+|.++++|..|+. |||..|.|+.|.|..+.
T Consensus 12 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 91 (103)
T 2dnm_A 12 GMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVAR 91 (103)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEECS
T ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEECC
Confidence 358999999999999999999999999999999998753 46899999999999999995 99999999999999886
Q ss_pred CCC
Q 027228 79 NYV 81 (226)
Q Consensus 79 ~~~ 81 (226)
...
T Consensus 92 ~~~ 94 (103)
T 2dnm_A 92 YGR 94 (103)
T ss_dssp SCC
T ss_pred cCC
Confidence 543
No 48
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=2.4e-16 Score=117.86 Aligned_cols=80 Identities=21% Similarity=0.301 Sum_probs=72.1
Q ss_pred CccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCC-CCcEEEEEEcChHHHHHHHh-hcCCeecceEEEEeeCCCC
Q 027228 3 QTRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYG-QSKTAFVTFKDAKALEIALL-LSGATIVDQIVSITPAENY 80 (226)
Q Consensus 3 ~~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~~-~~~~A~V~F~~~~aa~tAl~-Lng~~l~gr~I~V~~a~~~ 80 (226)
..++|||+|||+.+|+++|+++|+.||+|.+|.|..+.+ ..++|||+|.++++|..|+. |||..|.|+.|.|..+...
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 93 (103)
T 2d9p_A 14 QVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRK 93 (103)
T ss_dssp SCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECSSC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEeccc
Confidence 368999999999999999999999999999999998843 35799999999999999995 9999999999999987654
Q ss_pred CC
Q 027228 81 VP 82 (226)
Q Consensus 81 ~~ 82 (226)
..
T Consensus 94 ~~ 95 (103)
T 2d9p_A 94 EE 95 (103)
T ss_dssp CC
T ss_pred cc
Confidence 43
No 49
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.67 E-value=6.7e-17 Score=116.34 Aligned_cols=72 Identities=21% Similarity=0.242 Sum_probs=64.9
Q ss_pred ccEEEEeCCCCcc------cHHHHHHHcccCCceeEEEEEecCC-CCcEEEEEEcChHHHHHHHh-hcCCeecce-EEEE
Q 027228 4 TRTVQVKNVSDLA------HEREIHEFFSFSGDIERIEILREYG-QSKTAFVTFKDAKALEIALL-LSGATIVDQ-IVSI 74 (226)
Q Consensus 4 ~~tV~V~NLs~~t------Te~~L~efFs~cG~I~sI~i~~d~~-~~~~A~V~F~~~~aa~tAl~-Lng~~l~gr-~I~V 74 (226)
+++|||+|||+.+ |+++|+++|+.||+|.+|.|.++.+ ..|+|||+|.++++|..|+. |||..|+|+ .|+|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence 4799999999999 7899999999999999999985443 46899999999999999995 999999999 8877
Q ss_pred e
Q 027228 75 T 75 (226)
Q Consensus 75 ~ 75 (226)
.
T Consensus 81 ~ 81 (81)
T 2krb_A 81 N 81 (81)
T ss_dssp C
T ss_pred C
Confidence 3
No 50
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=2.8e-16 Score=119.17 Aligned_cols=74 Identities=14% Similarity=0.229 Sum_probs=69.1
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCCCCcEEEEEEcChHHHHHHHh-hcCCeecc-----eEEEEeeC
Q 027228 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIALL-LSGATIVD-----QIVSITPA 77 (226)
Q Consensus 4 ~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~~~~~~A~V~F~~~~aa~tAl~-Lng~~l~g-----r~I~V~~a 77 (226)
.++|||+|||+.+|+++|+++|+.||+|.+|.|..+ +||||+|+++++|..|+. |||..|.| +.|.|..+
T Consensus 15 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~----g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~~a 90 (108)
T 1x4c_A 15 ENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD----GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVD 90 (108)
T ss_dssp CCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT----TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEEES
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC----CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEEeC
Confidence 579999999999999999999999999999999876 799999999999999995 99999999 99999988
Q ss_pred CCCC
Q 027228 78 ENYV 81 (226)
Q Consensus 78 ~~~~ 81 (226)
....
T Consensus 91 ~~~~ 94 (108)
T 1x4c_A 91 GPRS 94 (108)
T ss_dssp SCCS
T ss_pred CCCC
Confidence 6643
No 51
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=1.4e-16 Score=121.52 Aligned_cols=78 Identities=19% Similarity=0.255 Sum_probs=70.4
Q ss_pred CccEEEEeCCCCcccHHHHH---HHcccCCceeEEEEEecCC------CCcEEEEEEcChHHHHHHHh-hcCCeecceEE
Q 027228 3 QTRTVQVKNVSDLAHEREIH---EFFSFSGDIERIEILREYG------QSKTAFVTFKDAKALEIALL-LSGATIVDQIV 72 (226)
Q Consensus 3 ~~~tV~V~NLs~~tTe~~L~---efFs~cG~I~sI~i~~d~~------~~~~A~V~F~~~~aa~tAl~-Lng~~l~gr~I 72 (226)
+.++|||+|||+.+++++|+ ++|+.||+|.+|.|..+.. ..+||||+|+++++|..|+. |||..|+|+.|
T Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l 93 (111)
T 2cpi_A 14 QKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTL 93 (111)
T ss_dssp CSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEEE
Confidence 35799999999999999999 9999999999999988763 24799999999999999995 89999999999
Q ss_pred EEeeCCCC
Q 027228 73 SITPAENY 80 (226)
Q Consensus 73 ~V~~a~~~ 80 (226)
.|..+..-
T Consensus 94 ~V~~a~~k 101 (111)
T 2cpi_A 94 KASLGTTK 101 (111)
T ss_dssp EEESCCCC
T ss_pred EEEecccc
Confidence 99987543
No 52
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1.9e-16 Score=118.58 Aligned_cols=77 Identities=16% Similarity=0.241 Sum_probs=70.7
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecC---CCCcEEEEEEcChHHHHHHHh-hcCCeecceEEEEeeCCC
Q 027228 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREY---GQSKTAFVTFKDAKALEIALL-LSGATIVDQIVSITPAEN 79 (226)
Q Consensus 4 ~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~---~~~~~A~V~F~~~~aa~tAl~-Lng~~l~gr~I~V~~a~~ 79 (226)
.++|||+|||+.+|+++|+++|+.||+|.+|.|..+. ...+||||+|.++++|..|+. |||..|.|+.|.|..+..
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 94 (105)
T 1x5u_A 15 DATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKASA 94 (105)
T ss_dssp TTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEETTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCC
Confidence 5899999999999999999999999999999999875 246799999999999999995 999999999999998755
Q ss_pred C
Q 027228 80 Y 80 (226)
Q Consensus 80 ~ 80 (226)
.
T Consensus 95 ~ 95 (105)
T 1x5u_A 95 H 95 (105)
T ss_dssp T
T ss_pred C
Confidence 4
No 53
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1.8e-16 Score=118.15 Aligned_cols=78 Identities=22% Similarity=0.342 Sum_probs=71.4
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecC---CCCcEEEEEEcChHHHHHHH-hhcCCeecceEEEEeeCCC
Q 027228 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREY---GQSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPAEN 79 (226)
Q Consensus 4 ~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~---~~~~~A~V~F~~~~aa~tAl-~Lng~~l~gr~I~V~~a~~ 79 (226)
.++|||+|||+.+|+++|+++|+.||+|.+|.|..+. ...+||||+|.++++|..|+ .|||..|.|+.|.|..+..
T Consensus 12 ~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 91 (102)
T 2cqb_A 12 KRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAKP 91 (102)
T ss_dssp CSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeCCC
Confidence 5899999999999999999999999999999998875 24789999999999999999 6999999999999998765
Q ss_pred CC
Q 027228 80 YV 81 (226)
Q Consensus 80 ~~ 81 (226)
..
T Consensus 92 ~~ 93 (102)
T 2cqb_A 92 MR 93 (102)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 54
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.66 E-value=3.8e-17 Score=115.20 Aligned_cols=72 Identities=22% Similarity=0.282 Sum_probs=66.6
Q ss_pred EEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCC---CCcEEEEEEcChHHHHHHHhhcCCeecceEEEEeeC
Q 027228 6 TVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYG---QSKTAFVTFKDAKALEIALLLSGATIVDQIVSITPA 77 (226)
Q Consensus 6 tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~~---~~~~A~V~F~~~~aa~tAl~Lng~~l~gr~I~V~~a 77 (226)
+|||+|||+.+|+++|+++|+.||+|.++.+..++. ..++|||+|++++++..|+.++|..|+|+.|.|..+
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTTSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEC
Confidence 589999999999999999999999999999988752 468999999999999999999999999999999754
No 55
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=2.2e-16 Score=118.40 Aligned_cols=76 Identities=22% Similarity=0.285 Sum_probs=69.8
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCC---CCcEEEEEEcChHHHHHHHh-hcCCeecceEEEEeeCCC
Q 027228 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYG---QSKTAFVTFKDAKALEIALL-LSGATIVDQIVSITPAEN 79 (226)
Q Consensus 4 ~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~~---~~~~A~V~F~~~~aa~tAl~-Lng~~l~gr~I~V~~a~~ 79 (226)
.++|||+|||+.+++++|+++|+.||+|.+|.|..+.. ..++|||+|.++++|..|+. |||..|+|+.|.|..+..
T Consensus 23 ~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 102 (106)
T 1p27_B 23 GWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCFV 102 (106)
T ss_dssp BEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEESEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEeecC
Confidence 57899999999999999999999999999999998863 36899999999999999995 999999999999987643
No 56
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=1.5e-16 Score=119.28 Aligned_cols=79 Identities=16% Similarity=0.221 Sum_probs=71.5
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCC---CCcEEEEEEcChHHHHHHHhhcCCeecceEEEEeeCCCC
Q 027228 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYG---QSKTAFVTFKDAKALEIALLLSGATIVDQIVSITPAENY 80 (226)
Q Consensus 4 ~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~~---~~~~A~V~F~~~~aa~tAl~Lng~~l~gr~I~V~~a~~~ 80 (226)
.++|||+|||+.+++++|+++|+.||+|.+|.|..++. ..+||||+|+++++|..||.+||..|+|+.|.|..+...
T Consensus 16 ~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~V~~a~~~ 95 (105)
T 2dh8_A 16 IGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKPCTPR 95 (105)
T ss_dssp SSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHHCSEEETTEEEBCCCSCCS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEccCC
Confidence 58999999999999999999999999999999999853 357999999999999999977999999999999887654
Q ss_pred CC
Q 027228 81 VP 82 (226)
Q Consensus 81 ~~ 82 (226)
..
T Consensus 96 ~~ 97 (105)
T 2dh8_A 96 GM 97 (105)
T ss_dssp SC
T ss_pred CC
Confidence 43
No 57
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.66 E-value=2.4e-16 Score=120.29 Aligned_cols=76 Identities=20% Similarity=0.289 Sum_probs=70.1
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCC---CCcEEEEEEcChHHHHHHH-hhcCCeecceEEEEeeCCC
Q 027228 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYG---QSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPAEN 79 (226)
Q Consensus 4 ~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~~---~~~~A~V~F~~~~aa~tAl-~Lng~~l~gr~I~V~~a~~ 79 (226)
.++|||+|||+.+|+++|+++|+.||+|.+|.+..++. ..++|||+|.++++|..|+ .|||..|+|+.|.|..+..
T Consensus 26 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~ 105 (108)
T 2jrs_A 26 PMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTE 105 (108)
T ss_dssp CEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEECSCS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEccc
Confidence 57999999999999999999999999999999998853 3579999999999999999 5999999999999997754
No 58
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.66 E-value=1.9e-16 Score=119.79 Aligned_cols=78 Identities=19% Similarity=0.222 Sum_probs=70.3
Q ss_pred ccEEEEeCCCCcc------cHHHHHHHcccCCceeEEEEEecCC-CCcEEEEEEcChHHHHHHHh-hcCCeecce-EEEE
Q 027228 4 TRTVQVKNVSDLA------HEREIHEFFSFSGDIERIEILREYG-QSKTAFVTFKDAKALEIALL-LSGATIVDQ-IVSI 74 (226)
Q Consensus 4 ~~tV~V~NLs~~t------Te~~L~efFs~cG~I~sI~i~~d~~-~~~~A~V~F~~~~aa~tAl~-Lng~~l~gr-~I~V 74 (226)
.++|||+|||+.+ |+++|+++|+.||+|.+|.|.+..+ ..|||||+|.++++|..|+. |||..|.|+ .|.|
T Consensus 15 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l~V 94 (105)
T 2nlw_A 15 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 94 (105)
T ss_dssp CSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCEEEE
T ss_pred CCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCceEEE
Confidence 5799999999999 8899999999999999999985443 46899999999999999995 999999999 9999
Q ss_pred eeCCCCC
Q 027228 75 TPAENYV 81 (226)
Q Consensus 75 ~~a~~~~ 81 (226)
..+.+..
T Consensus 95 ~~a~~~~ 101 (105)
T 2nlw_A 95 NLFTDFD 101 (105)
T ss_dssp ECSCCCC
T ss_pred EEcchHh
Confidence 9886653
No 59
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.66 E-value=2.8e-16 Score=119.88 Aligned_cols=78 Identities=9% Similarity=0.179 Sum_probs=71.1
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCC---CCcEEEEEEcChHHHHHHH-hhcCCeecceEEEEeeCCC
Q 027228 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYG---QSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPAEN 79 (226)
Q Consensus 4 ~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~~---~~~~A~V~F~~~~aa~tAl-~Lng~~l~gr~I~V~~a~~ 79 (226)
.++|||+|||+.+++++|+++|+.||+|.+|.|..+.. ..+||||+|.+++++..|+ .|||..|.|+.|.|..+..
T Consensus 25 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 104 (115)
T 2cpz_A 25 GANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRS 104 (115)
T ss_dssp TCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECCCC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcCC
Confidence 47999999999999999999999999999999998863 3579999999999999999 7999999999999998755
Q ss_pred CC
Q 027228 80 YV 81 (226)
Q Consensus 80 ~~ 81 (226)
..
T Consensus 105 ~~ 106 (115)
T 2cpz_A 105 KN 106 (115)
T ss_dssp SC
T ss_pred CC
Confidence 43
No 60
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=3.4e-16 Score=114.52 Aligned_cols=76 Identities=17% Similarity=0.242 Sum_probs=69.7
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecC--CCCcEEEEEEcChHHHHHHHhhcCCeecceEEEEeeCCCC
Q 027228 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREY--GQSKTAFVTFKDAKALEIALLLSGATIVDQIVSITPAENY 80 (226)
Q Consensus 4 ~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~--~~~~~A~V~F~~~~aa~tAl~Lng~~l~gr~I~V~~a~~~ 80 (226)
.++|||+|||+.+|+++|++||+.| .|.+|.|+.+. ...++|||+|.+++++..|+.|||..|+|+.|.|..+...
T Consensus 10 ~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~~g~~~~gr~i~v~~a~~~ 87 (91)
T 2dgw_A 10 CHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALKCNREYMGGRYIEVFREKSG 87 (91)
T ss_dssp CCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHHSCSEEETTEEEEEEEESSC
T ss_pred ccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHHhCCceeCCcEEEEEECCcC
Confidence 5899999999999999999999999 99999999884 2367999999999999999999999999999999887543
No 61
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.66 E-value=2.8e-16 Score=116.84 Aligned_cols=74 Identities=18% Similarity=0.313 Sum_probs=68.6
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeE--------EEEEecCC---CCcEEEEEEcChHHHHHHH-hhcCCeecceE
Q 027228 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIER--------IEILREYG---QSKTAFVTFKDAKALEIAL-LLSGATIVDQI 71 (226)
Q Consensus 4 ~~tV~V~NLs~~tTe~~L~efFs~cG~I~s--------I~i~~d~~---~~~~A~V~F~~~~aa~tAl-~Lng~~l~gr~ 71 (226)
.++|||+|||+.+|+++|+++|+.||.|.+ |.+..+.. ..|+|||+|.+++++..|+ .|||..|.|+.
T Consensus 13 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g~~ 92 (99)
T 2la6_A 13 NNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNP 92 (99)
T ss_dssp CSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSSSSB
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCcE
Confidence 579999999999999999999999999999 99998853 3679999999999999999 59999999999
Q ss_pred EEEeeC
Q 027228 72 VSITPA 77 (226)
Q Consensus 72 I~V~~a 77 (226)
|.|..+
T Consensus 93 l~V~~A 98 (99)
T 2la6_A 93 IKVSFA 98 (99)
T ss_dssp CEEEEC
T ss_pred EEEEec
Confidence 999875
No 62
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=3e-16 Score=116.35 Aligned_cols=78 Identities=18% Similarity=0.251 Sum_probs=70.5
Q ss_pred CccEEEEeCCCCcccHHHHHHHcccCCcee-EEEEEecCC---CCcEEEEEEcChHHHHHHHh-hcCCeecceE----EE
Q 027228 3 QTRTVQVKNVSDLAHEREIHEFFSFSGDIE-RIEILREYG---QSKTAFVTFKDAKALEIALL-LSGATIVDQI----VS 73 (226)
Q Consensus 3 ~~~tV~V~NLs~~tTe~~L~efFs~cG~I~-sI~i~~d~~---~~~~A~V~F~~~~aa~tAl~-Lng~~l~gr~----I~ 73 (226)
+.++|||+|||+.+++++|+++|+.||+|. +|+|..+.. ..+||||+|.++++|+.|+. |||..|.|+. |.
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l~ 87 (99)
T 2div_A 8 MAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFK 87 (99)
T ss_dssp SSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeEE
Confidence 368999999999999999999999999999 999998862 35799999999999999995 9999999999 99
Q ss_pred EeeCCCC
Q 027228 74 ITPAENY 80 (226)
Q Consensus 74 V~~a~~~ 80 (226)
|..+...
T Consensus 88 v~~a~~~ 94 (99)
T 2div_A 88 LNYATYS 94 (99)
T ss_dssp EEETTCC
T ss_pred EeecCCC
Confidence 9876543
No 63
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.66 E-value=4.2e-16 Score=116.70 Aligned_cols=78 Identities=21% Similarity=0.290 Sum_probs=70.9
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCC--CCcEEEEEEcChHHHHHHH-hhcCCeecc---eEEEEeeC
Q 027228 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYG--QSKTAFVTFKDAKALEIAL-LLSGATIVD---QIVSITPA 77 (226)
Q Consensus 4 ~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~~--~~~~A~V~F~~~~aa~tAl-~Lng~~l~g---r~I~V~~a 77 (226)
.++|||+|||+.+++++|+++|+.||+|.+|.|..+.. ..+||||+|.++++|..|+ .|||..|.| +.|.|..+
T Consensus 15 ~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~~a 94 (105)
T 2dnh_A 15 DRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFA 94 (105)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEEES
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEEEC
Confidence 58999999999999999999999999999999998862 3579999999999999999 599999998 99999987
Q ss_pred CCCC
Q 027228 78 ENYV 81 (226)
Q Consensus 78 ~~~~ 81 (226)
....
T Consensus 95 ~~~~ 98 (105)
T 2dnh_A 95 DTDK 98 (105)
T ss_dssp CSSC
T ss_pred ccCc
Confidence 6543
No 64
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=8.1e-17 Score=116.28 Aligned_cols=75 Identities=12% Similarity=0.195 Sum_probs=68.3
Q ss_pred CccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecC---CCCcEEEEEEcChHHHHHHHh-hcCCeecceEEEEeeC
Q 027228 3 QTRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREY---GQSKTAFVTFKDAKALEIALL-LSGATIVDQIVSITPA 77 (226)
Q Consensus 3 ~~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~---~~~~~A~V~F~~~~aa~tAl~-Lng~~l~gr~I~V~~a 77 (226)
..++|||+|||+.+++++|+++|+.||+|.++.|..++ ...++|||+|.++++|..|+. |||..|.|+.|+|...
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 46899999999999999999999999999999999875 236899999999999999995 9999999999988643
No 65
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.66 E-value=7.3e-17 Score=122.44 Aligned_cols=76 Identities=12% Similarity=0.127 Sum_probs=70.0
Q ss_pred CccEEEEeCCCCcccHHHHHHHcccCCc---eeEEEEEecCC--CCcEEEEEEcChHHHHHHHhhcCCeecceEEEEeeC
Q 027228 3 QTRTVQVKNVSDLAHEREIHEFFSFSGD---IERIEILREYG--QSKTAFVTFKDAKALEIALLLSGATIVDQIVSITPA 77 (226)
Q Consensus 3 ~~~tV~V~NLs~~tTe~~L~efFs~cG~---I~sI~i~~d~~--~~~~A~V~F~~~~aa~tAl~Lng~~l~gr~I~V~~a 77 (226)
..++|||+|||+.+|+++|++||+.||. |.+|.|..+.. ..|+|||+|.+++++..||.|||..|+||.|.|..+
T Consensus 10 ~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~a 89 (107)
T 2lmi_A 10 DVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYEI 89 (107)
T ss_dssp SCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHTTTTCCSSSSCCCCEEC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCcceeCCeEEEEEEC
Confidence 3579999999999999999999999999 99999998763 468999999999999999999999999999999876
Q ss_pred C
Q 027228 78 E 78 (226)
Q Consensus 78 ~ 78 (226)
.
T Consensus 90 ~ 90 (107)
T 2lmi_A 90 N 90 (107)
T ss_dssp C
T ss_pred C
Confidence 4
No 66
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.66 E-value=1.5e-16 Score=116.90 Aligned_cols=75 Identities=20% Similarity=0.218 Sum_probs=68.4
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCC---CCcEEEEEEcChHHHHHHHh-hcCCeecceEEEEeeCC
Q 027228 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYG---QSKTAFVTFKDAKALEIALL-LSGATIVDQIVSITPAE 78 (226)
Q Consensus 4 ~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~~---~~~~A~V~F~~~~aa~tAl~-Lng~~l~gr~I~V~~a~ 78 (226)
.++|||+|||+.+|+++|+++|+.||.|.++.++.++. ..++|||+|.++++|..|+. |||..|.|+.|.|..+.
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 15 PTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPS 93 (95)
T ss_dssp CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEecc
Confidence 47999999999999999999999999999988887653 35899999999999999995 99999999999998764
No 67
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=6.3e-16 Score=113.07 Aligned_cols=75 Identities=21% Similarity=0.282 Sum_probs=69.0
Q ss_pred CccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCCCCcEEEEEEcChHHHHHHH-hhcCCeecceEEEEeeCCCCC
Q 027228 3 QTRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPAENYV 81 (226)
Q Consensus 3 ~~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~~~~~~A~V~F~~~~aa~tAl-~Lng~~l~gr~I~V~~a~~~~ 81 (226)
..++|||+|||+.+|+++|+++|+.||+|.+|.+. .++|||+|.++++|..|+ .|||..|.|+.|.|..+....
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 81 (90)
T 2dnq_A 7 GMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII-----KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKNKS 81 (90)
T ss_dssp CCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE-----TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSCCC
T ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE-----CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCCCC
Confidence 35899999999999999999999999999999998 569999999999999999 699999999999999876543
Q ss_pred C
Q 027228 82 P 82 (226)
Q Consensus 82 ~ 82 (226)
.
T Consensus 82 ~ 82 (90)
T 2dnq_A 82 K 82 (90)
T ss_dssp C
T ss_pred C
Confidence 3
No 68
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.66 E-value=3.5e-16 Score=118.21 Aligned_cols=76 Identities=25% Similarity=0.265 Sum_probs=69.7
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCC---CCcEEEEEEcChHHHHHHHh-hcCCeecceEEEEeeCCC
Q 027228 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYG---QSKTAFVTFKDAKALEIALL-LSGATIVDQIVSITPAEN 79 (226)
Q Consensus 4 ~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~~---~~~~A~V~F~~~~aa~tAl~-Lng~~l~gr~I~V~~a~~ 79 (226)
.++|||+|||+.+|+++|+++|+.||+|.+|.|..+.. ..++|||+|.++++|..|+. |||..|+|+.|.|..+..
T Consensus 26 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 105 (110)
T 1oo0_B 26 GWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFV 105 (110)
T ss_dssp BEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEccc
Confidence 57899999999999999999999999999999988752 36899999999999999995 999999999999987643
No 69
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.66 E-value=2.7e-16 Score=120.25 Aligned_cols=74 Identities=9% Similarity=0.197 Sum_probs=68.5
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecC---CCCcEEEEEEcChHHHHHHHh-hcCCeecceEEEEeeC
Q 027228 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREY---GQSKTAFVTFKDAKALEIALL-LSGATIVDQIVSITPA 77 (226)
Q Consensus 4 ~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~---~~~~~A~V~F~~~~aa~tAl~-Lng~~l~gr~I~V~~a 77 (226)
.++|||+|||+.+++++|+++|+.||+|.+|+|..+. ...+||||+|.+++++..|+. |||..|+|+.|+|..+
T Consensus 40 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 117 (118)
T 2khc_A 40 GCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQLK 117 (118)
T ss_dssp SEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEec
Confidence 5799999999999999999999999999999999875 246899999999999999995 9999999999999865
No 70
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=9.1e-16 Score=116.41 Aligned_cols=77 Identities=23% Similarity=0.308 Sum_probs=70.4
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCC--CCcEEEEEEcChHHHHHHHh-hcCCeecceEEEEeeCCCC
Q 027228 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYG--QSKTAFVTFKDAKALEIALL-LSGATIVDQIVSITPAENY 80 (226)
Q Consensus 4 ~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~~--~~~~A~V~F~~~~aa~tAl~-Lng~~l~gr~I~V~~a~~~ 80 (226)
.++|||+|||+.+++++|+++|+.||+|.+|.|..+.. ..+||||+|+++++|..|+. |||..|.|+.|.|..+...
T Consensus 15 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 94 (114)
T 2do0_A 15 GSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDERA 94 (114)
T ss_dssp CSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEcccC
Confidence 57999999999999999999999999999999998763 35799999999999999995 9999999999999987543
No 71
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=3.4e-16 Score=117.34 Aligned_cols=78 Identities=23% Similarity=0.364 Sum_probs=70.8
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEec-C---CCCcEEEEEEcChHHHHHHH-hh-cCCeecceEEEEeeC
Q 027228 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILRE-Y---GQSKTAFVTFKDAKALEIAL-LL-SGATIVDQIVSITPA 77 (226)
Q Consensus 4 ~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d-~---~~~~~A~V~F~~~~aa~tAl-~L-ng~~l~gr~I~V~~a 77 (226)
.++|||+|||+.+|+++|+++|+.||+|.+|.|..+ . ...+||||+|.++++|..|+ .| ||..|.|+.|.|..+
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v~~a 94 (107)
T 2cph_A 15 TSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVLEWA 94 (107)
T ss_dssp CCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEEEEC
T ss_pred CCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEEEeC
Confidence 579999999999999999999999999999999887 3 24689999999999999999 58 999999999999987
Q ss_pred CCCC
Q 027228 78 ENYV 81 (226)
Q Consensus 78 ~~~~ 81 (226)
....
T Consensus 95 ~~~~ 98 (107)
T 2cph_A 95 DSEV 98 (107)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 6543
No 72
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.65 E-value=1.6e-16 Score=127.32 Aligned_cols=75 Identities=13% Similarity=0.189 Sum_probs=69.7
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCc---eeEEEEEecCC--CCcEEEEEEcChHHHHHHHhhcCCeecceEEEEeeCC
Q 027228 4 TRTVQVKNVSDLAHEREIHEFFSFSGD---IERIEILREYG--QSKTAFVTFKDAKALEIALLLSGATIVDQIVSITPAE 78 (226)
Q Consensus 4 ~~tV~V~NLs~~tTe~~L~efFs~cG~---I~sI~i~~d~~--~~~~A~V~F~~~~aa~tAl~Lng~~l~gr~I~V~~a~ 78 (226)
.++|||+|||+++|+++|++||+.||. |.+|.|+.+.. .+|||||+|+++++|+.||.|||..|+||.|.|..+.
T Consensus 44 ~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~~~g~~l~gr~i~V~~a~ 123 (136)
T 2hgl_A 44 GFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALKKDRESMGHRYIEVFKSH 123 (136)
T ss_dssp TCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHTTTEEESSSSEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCEECCEEEEEEECC
Confidence 579999999999999999999999999 89999998763 3679999999999999999999999999999998763
No 73
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.65 E-value=4e-16 Score=120.41 Aligned_cols=79 Identities=14% Similarity=0.294 Sum_probs=71.9
Q ss_pred CccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecC--CCCcEEEEEEcChHHHHHHH-hhcCCeecceEEEEeeCCC
Q 027228 3 QTRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREY--GQSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPAEN 79 (226)
Q Consensus 3 ~~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~--~~~~~A~V~F~~~~aa~tAl-~Lng~~l~gr~I~V~~a~~ 79 (226)
..++|||+|||+.+|+++|+++|+.||+|.+|.|..+. ...+||||+|.+.++|+.|+ .|||..|.|+.|.|..+..
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 85 (116)
T 2fy1_A 6 HPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAKK 85 (116)
T ss_dssp SCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCC
Confidence 36899999999999999999999999999999999876 24689999999999999999 5999999999999998865
Q ss_pred CC
Q 027228 80 YV 81 (226)
Q Consensus 80 ~~ 81 (226)
..
T Consensus 86 ~~ 87 (116)
T 2fy1_A 86 PS 87 (116)
T ss_dssp SS
T ss_pred CC
Confidence 43
No 74
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=5.1e-16 Score=117.09 Aligned_cols=78 Identities=21% Similarity=0.252 Sum_probs=71.2
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCC---CCcEEEEEEcChHHHHHHH-hhc------CCeecceEEE
Q 027228 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYG---QSKTAFVTFKDAKALEIAL-LLS------GATIVDQIVS 73 (226)
Q Consensus 4 ~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~~---~~~~A~V~F~~~~aa~tAl-~Ln------g~~l~gr~I~ 73 (226)
.++|||+|||+.+|+++|+++|+.||+|.+|.|..+.. ..+||||+|.++++|..|+ .|| |..|+|+.|.
T Consensus 15 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~~l~ 94 (111)
T 1x4h_A 15 GKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQLK 94 (111)
T ss_dssp CCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCEEE
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCEEEE
Confidence 57999999999999999999999999999999998853 4689999999999999999 599 9999999999
Q ss_pred EeeCCCCC
Q 027228 74 ITPAENYV 81 (226)
Q Consensus 74 V~~a~~~~ 81 (226)
|..+....
T Consensus 95 v~~a~~~~ 102 (111)
T 1x4h_A 95 VDLAVTRD 102 (111)
T ss_dssp EECCCCCC
T ss_pred EEECCCCc
Confidence 99876543
No 75
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=6.2e-16 Score=118.10 Aligned_cols=79 Identities=16% Similarity=0.235 Sum_probs=71.6
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCC---CCcEEEEEEcChHHHHHHHhhcCCeecceEEEEeeCCCC
Q 027228 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYG---QSKTAFVTFKDAKALEIALLLSGATIVDQIVSITPAENY 80 (226)
Q Consensus 4 ~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~~---~~~~A~V~F~~~~aa~tAl~Lng~~l~gr~I~V~~a~~~ 80 (226)
.++|||+|||+.+|+++|+++|+.||+|.+|.|..+.. ..+||||+|.++++|..||.+||..|+|+.|.|..+...
T Consensus 27 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~a~~~ 106 (116)
T 1x4b_A 27 FRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAR 106 (116)
T ss_dssp HTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTSCSEEETTEEEEEECCSSC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHhCCcEECCEEEEEEECCCC
Confidence 47999999999999999999999999999999998852 467999999999999999977999999999999987654
Q ss_pred CC
Q 027228 81 VP 82 (226)
Q Consensus 81 ~~ 82 (226)
..
T Consensus 107 ~~ 108 (116)
T 1x4b_A 107 EE 108 (116)
T ss_dssp CC
T ss_pred cc
Confidence 33
No 76
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.65 E-value=6.2e-16 Score=117.98 Aligned_cols=77 Identities=17% Similarity=0.223 Sum_probs=69.6
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecC---CCCcEEEEEEcChHHHHHHHhhcCCeecceEEEEeeCCCC
Q 027228 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREY---GQSKTAFVTFKDAKALEIALLLSGATIVDQIVSITPAENY 80 (226)
Q Consensus 4 ~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~---~~~~~A~V~F~~~~aa~tAl~Lng~~l~gr~I~V~~a~~~ 80 (226)
.++|||+|||+.+|+++|+++|+.||+|.+|.|..+. ...|||||+|.+++++..|+..+|..|+|+.|.|..+...
T Consensus 25 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~g~~l~V~~a~~~ 104 (109)
T 2rs2_A 25 GCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPR 104 (109)
T ss_dssp -CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSCEEETTEEEEEEECCCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCCCcCCCEEEEEEEccCC
Confidence 5899999999999999999999999999999999875 2468999999999999999977789999999999987543
No 77
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=1.6e-16 Score=112.32 Aligned_cols=72 Identities=17% Similarity=0.249 Sum_probs=65.8
Q ss_pred cEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCC---CCcEEEEEEcChHHHHHHHh-hcCCeecceEEEEeeC
Q 027228 5 RTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYG---QSKTAFVTFKDAKALEIALL-LSGATIVDQIVSITPA 77 (226)
Q Consensus 5 ~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~~---~~~~A~V~F~~~~aa~tAl~-Lng~~l~gr~I~V~~a 77 (226)
++|||+|||+.+++++|+++|+.||+|.++.+..++. ..++|||+|.+++++..|+. +| ..|+|+.|.|..+
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 4799999999999999999999999999999998752 46899999999999999995 66 9999999999865
No 78
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.65 E-value=4.2e-16 Score=112.57 Aligned_cols=71 Identities=21% Similarity=0.356 Sum_probs=66.5
Q ss_pred CccEEEEeCCCCcccHHHHHHHcccC----C-------ceeEEEEEecCCCCcEEEEEEcChHHHHHHHhhcCCeecceE
Q 027228 3 QTRTVQVKNVSDLAHEREIHEFFSFS----G-------DIERIEILREYGQSKTAFVTFKDAKALEIALLLSGATIVDQI 71 (226)
Q Consensus 3 ~~~tV~V~NLs~~tTe~~L~efFs~c----G-------~I~sI~i~~d~~~~~~A~V~F~~~~aa~tAl~Lng~~l~gr~ 71 (226)
..++|||+|||+.+|+++|+++|+.| | +|.++.+..+ .+||||+|.++++|..|+.|||..|.|+.
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~---kg~afV~f~~~~~a~~A~~l~g~~~~g~~ 81 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD---KNFAFLEFRSVDETTQAMAFDGIIFQGQS 81 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS---SSEEEEEESSHHHHHHHGGGTTCEETTEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC---CcEEEEEcCCHHHHHHHHhcCCCEECCeE
Confidence 35899999999999999999999999 8 9999999865 67999999999999999999999999999
Q ss_pred EEEee
Q 027228 72 VSITP 76 (226)
Q Consensus 72 I~V~~ 76 (226)
|.|.+
T Consensus 82 l~V~r 86 (87)
T 2hzc_A 82 LKIRR 86 (87)
T ss_dssp CEEEC
T ss_pred EEEeC
Confidence 99975
No 79
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.65 E-value=2.3e-16 Score=122.46 Aligned_cols=75 Identities=12% Similarity=0.182 Sum_probs=68.4
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCC-ceeEEEEEecCCCCcEEEEEEcChHHHHHHH-hhcCCeecceEEEEeeCCC
Q 027228 4 TRTVQVKNVSDLAHEREIHEFFSFSG-DIERIEILREYGQSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPAEN 79 (226)
Q Consensus 4 ~~tV~V~NLs~~tTe~~L~efFs~cG-~I~sI~i~~d~~~~~~A~V~F~~~~aa~tAl-~Lng~~l~gr~I~V~~a~~ 79 (226)
.++|||+|||+.+++++|+++|+.|| +|..+.+..+ ...|||||+|+++++|+.|+ .|||..|+|+.|.|..+..
T Consensus 28 ~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~-~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~~ 104 (111)
T 2jvr_A 28 RYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR-DFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDDN 104 (111)
T ss_dssp CEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC-SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESCC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC-CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCC
Confidence 46899999999999999999999999 9999999643 35789999999999999999 6999999999999998754
No 80
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.65 E-value=4.6e-16 Score=116.66 Aligned_cols=77 Identities=22% Similarity=0.352 Sum_probs=69.7
Q ss_pred CCCccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCCCCcEEEEEEcChHHHHHHHh-hcCCeecceEEEEeeCCC
Q 027228 1 MQQTRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIALL-LSGATIVDQIVSITPAEN 79 (226)
Q Consensus 1 Ms~~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~~~~~~A~V~F~~~~aa~tAl~-Lng~~l~gr~I~V~~a~~ 79 (226)
|...++|||+|||+.+|+++|+++|+.||+|.+|.+. .+||||+|.++++|..|+. |||..|.|+.|.|..+..
T Consensus 8 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~-----~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 82 (103)
T 2dgu_A 8 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL-----KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKP 82 (103)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC-----SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE-----CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCC
Confidence 4456899999999999999999999999999999997 4499999999999999995 999999999999998865
Q ss_pred CCC
Q 027228 80 YVP 82 (226)
Q Consensus 80 ~~~ 82 (226)
...
T Consensus 83 ~~~ 85 (103)
T 2dgu_A 83 PDQ 85 (103)
T ss_dssp CCC
T ss_pred Ccc
Confidence 443
No 81
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=5.1e-16 Score=115.46 Aligned_cols=76 Identities=18% Similarity=0.218 Sum_probs=69.8
Q ss_pred CccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCCCCcEEEEEEcChHHHHHHH-hhcCCeecceEEEEeeCCCCC
Q 027228 3 QTRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPAENYV 81 (226)
Q Consensus 3 ~~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~~~~~~A~V~F~~~~aa~tAl-~Lng~~l~gr~I~V~~a~~~~ 81 (226)
..++|||+|||+.+|+++|+++|+.||+|.+|.+.++ .++|||+|+++++|..|+ .|||..|.|+.|.|..+....
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~---kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~ 90 (99)
T 2cpj_A 14 QRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD---KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHSA 90 (99)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT---TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSCCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC---CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCCCC
Confidence 3579999999999999999999999999999999855 679999999999999999 799999999999999876543
No 82
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=3.5e-16 Score=116.70 Aligned_cols=77 Identities=19% Similarity=0.303 Sum_probs=70.7
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCC---CCcEEEEEEcChHHHHHHH-hhcCCeecceEEEEeeCCC
Q 027228 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYG---QSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPAEN 79 (226)
Q Consensus 4 ~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~~---~~~~A~V~F~~~~aa~tAl-~Lng~~l~gr~I~V~~a~~ 79 (226)
.++|||+|||+.+++++|+++|+.||+|.+|.+..+.. ..++|||+|.++++|..|+ .|||..|.|+.|.|..+..
T Consensus 8 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 87 (104)
T 1p1t_A 8 LRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAAS 87 (104)
T ss_dssp HSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETTC
T ss_pred ccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCCC
Confidence 57999999999999999999999999999999998853 3689999999999999999 5999999999999998755
Q ss_pred C
Q 027228 80 Y 80 (226)
Q Consensus 80 ~ 80 (226)
.
T Consensus 88 ~ 88 (104)
T 1p1t_A 88 E 88 (104)
T ss_dssp T
T ss_pred c
Confidence 3
No 83
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=3.9e-16 Score=120.73 Aligned_cols=75 Identities=13% Similarity=0.199 Sum_probs=67.8
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCCCCcEEEEEEcChHHHHHHHh-hc--CCeecceEEEEeeCCCC
Q 027228 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIALL-LS--GATIVDQIVSITPAENY 80 (226)
Q Consensus 4 ~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~~~~~~A~V~F~~~~aa~tAl~-Ln--g~~l~gr~I~V~~a~~~ 80 (226)
.++|||+|||+.+||++|+++|+.||+|.+|.|+++ ++||||+|+++++|..|+. |+ |..|.|++|.|..+..-
T Consensus 16 ~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~---kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A~~~ 92 (105)
T 1sjq_A 16 SRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG---KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHK 92 (105)
T ss_dssp CCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT---TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCCSSS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC---CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcCCC
Confidence 579999999999999999999999999999999976 6799999999999999995 75 47999999999887554
Q ss_pred C
Q 027228 81 V 81 (226)
Q Consensus 81 ~ 81 (226)
.
T Consensus 93 ~ 93 (105)
T 1sjq_A 93 E 93 (105)
T ss_dssp S
T ss_pred C
Confidence 3
No 84
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=7e-16 Score=117.78 Aligned_cols=76 Identities=20% Similarity=0.172 Sum_probs=69.1
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCC---CCcEEEEEEcChHHHHHHH-hhcCCeecceEEEEeeCCC
Q 027228 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYG---QSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPAEN 79 (226)
Q Consensus 4 ~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~~---~~~~A~V~F~~~~aa~tAl-~Lng~~l~gr~I~V~~a~~ 79 (226)
.++|||+|||+.+|+++|+++|+.||+|.+|+|..+.. ..+||||+|+++++|..|+ .||+ .|.|+.|.|..+..
T Consensus 17 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~a~~ 95 (116)
T 2cqd_A 17 FTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNLAYL 95 (116)
T ss_dssp SSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEESTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEEccc
Confidence 58999999999999999999999999999999998752 4679999999999999999 5777 99999999998754
Q ss_pred C
Q 027228 80 Y 80 (226)
Q Consensus 80 ~ 80 (226)
.
T Consensus 96 ~ 96 (116)
T 2cqd_A 96 G 96 (116)
T ss_dssp T
T ss_pred C
Confidence 3
No 85
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.64 E-value=1.8e-16 Score=118.69 Aligned_cols=75 Identities=23% Similarity=0.283 Sum_probs=68.7
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecC----CCCcEEEEEEcChHHHHHHHhhcCCeecceEEEEeeCCC
Q 027228 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREY----GQSKTAFVTFKDAKALEIALLLSGATIVDQIVSITPAEN 79 (226)
Q Consensus 4 ~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~----~~~~~A~V~F~~~~aa~tAl~Lng~~l~gr~I~V~~a~~ 79 (226)
.++|||+|||+.+++++|+++|+.|| |.+|+|..+. ...|||||+|.+.+++..|+.|||..|+|+.|.|..+..
T Consensus 19 ~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai~l~g~~~~g~~l~V~~a~~ 97 (100)
T 2j76_E 19 PYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNRRIRVDVADQ 97 (100)
T ss_dssp -CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHHHTTTCCBTTBCCCCEECCC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHHhcCCCEECCeEEEEEeccC
Confidence 58999999999999999999999999 9999999875 236899999999999999999999999999999987754
No 86
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.64 E-value=9.5e-16 Score=118.53 Aligned_cols=79 Identities=16% Similarity=0.176 Sum_probs=71.6
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecC--CCCcEEEEEEcChHHHHHHHh-hcCCeecceEEEEeeCCCC
Q 027228 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREY--GQSKTAFVTFKDAKALEIALL-LSGATIVDQIVSITPAENY 80 (226)
Q Consensus 4 ~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~--~~~~~A~V~F~~~~aa~tAl~-Lng~~l~gr~I~V~~a~~~ 80 (226)
.++|||+|||+.+++++|+++|+.||+|.+|.|..+. ...+||||+|.+.++|..|+. |||..|+|+.|.|..+...
T Consensus 35 ~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 114 (124)
T 2kt5_A 35 GAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVASQ 114 (124)
T ss_dssp CEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEECCT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeCCC
Confidence 5799999999999999999999999999999999876 246899999999999999995 9999999999999987654
Q ss_pred CC
Q 027228 81 VP 82 (226)
Q Consensus 81 ~~ 82 (226)
..
T Consensus 115 ~~ 116 (124)
T 2kt5_A 115 ID 116 (124)
T ss_dssp TC
T ss_pred CC
Confidence 33
No 87
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.64 E-value=8.5e-16 Score=123.21 Aligned_cols=80 Identities=26% Similarity=0.323 Sum_probs=72.8
Q ss_pred CccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCC---CCcEEEEEEcChHHHHHHHh-hcCCeecceEEEEeeCC
Q 027228 3 QTRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYG---QSKTAFVTFKDAKALEIALL-LSGATIVDQIVSITPAE 78 (226)
Q Consensus 3 ~~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~~---~~~~A~V~F~~~~aa~tAl~-Lng~~l~gr~I~V~~a~ 78 (226)
..++|||+|||+.+|+++|+++|+.||+|.+|.|+.+.. ..+||||+|+++++|..||. |||..|+|+.|.|..+.
T Consensus 38 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 117 (156)
T 1h2v_Z 38 KSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWDA 117 (156)
T ss_dssp TCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 468999999999999999999999999999999998863 35799999999999999995 99999999999999887
Q ss_pred CCCC
Q 027228 79 NYVP 82 (226)
Q Consensus 79 ~~~~ 82 (226)
....
T Consensus 118 ~~~~ 121 (156)
T 1h2v_Z 118 GFKE 121 (156)
T ss_dssp CCCT
T ss_pred CCCC
Confidence 6544
No 88
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=7.3e-16 Score=116.67 Aligned_cols=75 Identities=21% Similarity=0.265 Sum_probs=69.8
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCCCCcEEEEEEcChHHHHHHH-hhcCCeecceEEEEeeCCCCC
Q 027228 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPAENYV 81 (226)
Q Consensus 4 ~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~~~~~~A~V~F~~~~aa~tAl-~Lng~~l~gr~I~V~~a~~~~ 81 (226)
.++|||+|||+.+++++|+++|+.||+|.+|.|..+ .+||||+|.++++|..|+ .|||..|.|+.|.|..+....
T Consensus 25 ~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~---~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 100 (109)
T 1x4g_A 25 NCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE---KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESP 100 (109)
T ss_dssp CCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT---TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCCCC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC---CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCCCC
Confidence 579999999999999999999999999999999876 679999999999999999 799999999999999876543
No 89
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.64 E-value=6.1e-16 Score=126.06 Aligned_cols=75 Identities=19% Similarity=0.261 Sum_probs=68.9
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCC--ceeEEEEEecCC---CCcEEEEEEcChHHHHHHH-hhcCCeecceEEEEeeC
Q 027228 4 TRTVQVKNVSDLAHEREIHEFFSFSG--DIERIEILREYG---QSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPA 77 (226)
Q Consensus 4 ~~tV~V~NLs~~tTe~~L~efFs~cG--~I~sI~i~~d~~---~~~~A~V~F~~~~aa~tAl-~Lng~~l~gr~I~V~~a 77 (226)
.++|||+|||+.+|+++|+++|+.|| +|.+|.|+.+.. ..|||||+|.++++|..|+ .|||..|+|+.|.|..+
T Consensus 55 ~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~a 134 (156)
T 3n9u_C 55 RAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRPA 134 (156)
T ss_dssp -CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEEc
Confidence 47999999999999999999999999 999999998852 3679999999999999999 58999999999999977
Q ss_pred C
Q 027228 78 E 78 (226)
Q Consensus 78 ~ 78 (226)
.
T Consensus 135 ~ 135 (156)
T 3n9u_C 135 T 135 (156)
T ss_dssp C
T ss_pred C
Confidence 4
No 90
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.64 E-value=3.9e-16 Score=117.02 Aligned_cols=77 Identities=16% Similarity=0.292 Sum_probs=70.5
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCC---CCcEEEEEEcChHHHHHHH-hhcCCee---cceEEEEee
Q 027228 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYG---QSKTAFVTFKDAKALEIAL-LLSGATI---VDQIVSITP 76 (226)
Q Consensus 4 ~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~~---~~~~A~V~F~~~~aa~tAl-~Lng~~l---~gr~I~V~~ 76 (226)
.++|||+|||+.+|+++|+++|+.||+|.+|.|..+.. ..+||||+|.++++|..|+ .|||..+ .|+.|.|..
T Consensus 13 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~ 92 (106)
T 2dgp_A 13 AIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKP 92 (106)
T ss_dssp CEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEEEEE
Confidence 57999999999999999999999999999999998753 4689999999999999999 5999998 899999998
Q ss_pred CCCC
Q 027228 77 AENY 80 (226)
Q Consensus 77 a~~~ 80 (226)
+...
T Consensus 93 a~~~ 96 (106)
T 2dgp_A 93 ADSE 96 (106)
T ss_dssp CCCC
T ss_pred CCcc
Confidence 7654
No 91
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=3.4e-16 Score=115.79 Aligned_cols=76 Identities=20% Similarity=0.176 Sum_probs=69.0
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCC---CCcEEEEEEcChHHHHHHH-hhcCCeecceEEEEeeCCC
Q 027228 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYG---QSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPAEN 79 (226)
Q Consensus 4 ~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~~---~~~~A~V~F~~~~aa~tAl-~Lng~~l~gr~I~V~~a~~ 79 (226)
.++|||+|||+.+++++|+++|+.||.|.++.++.++. ..++|||+|.++++|..|+ .|||..|.|+.|.|..+.+
T Consensus 15 ~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 94 (98)
T 2cqp_A 15 PTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLGSG 94 (98)
T ss_dssp SEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEESSC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEcCC
Confidence 47899999999999999999999999999888887653 3689999999999999999 7999999999999998643
No 92
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=1.3e-16 Score=123.76 Aligned_cols=76 Identities=16% Similarity=0.210 Sum_probs=67.1
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecC---CCCcEEEEEEcChHHHHHHHhhcCCeecceEEEEeeCCC
Q 027228 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREY---GQSKTAFVTFKDAKALEIALLLSGATIVDQIVSITPAEN 79 (226)
Q Consensus 4 ~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~---~~~~~A~V~F~~~~aa~tAl~Lng~~l~gr~I~V~~a~~ 79 (226)
.++|||+|||+.+|+++|++||+.||.|.++.++.+. ...+||||+|+++++|..||.|||..|+|+.|.|..+..
T Consensus 25 ~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V~~a~~ 103 (124)
T 1wel_A 25 GFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHPITK 103 (124)
T ss_dssp CCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHTSCSBCSTTSCBEEEEECH
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEECCH
Confidence 5799999999999999999999999999985554443 236899999999999999999999999999999987643
No 93
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.64 E-value=5.9e-16 Score=115.32 Aligned_cols=72 Identities=13% Similarity=0.208 Sum_probs=67.0
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCCCCcEEEEEEcChHHHHHHH-hhcCCeecceEEEEeeCC
Q 027228 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPAE 78 (226)
Q Consensus 4 ~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~~~~~~A~V~F~~~~aa~tAl-~Lng~~l~gr~I~V~~a~ 78 (226)
.++|||+|||+.+++++|+++|+.||+|.+|++.+ ..+||||+|.+.++|..|+ .|||..|+|+.|.|..+.
T Consensus 27 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~---~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 99 (101)
T 2la4_A 27 VTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP---EKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGK 99 (101)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET---TTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCC
T ss_pred CCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec---CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEecc
Confidence 57999999999999999999999999999999983 3679999999999999999 699999999999998764
No 94
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.64 E-value=3.1e-16 Score=116.83 Aligned_cols=75 Identities=28% Similarity=0.358 Sum_probs=69.8
Q ss_pred cEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCCCCcEEEEEEcChHHHHHHHh-hcCCeecceEEEEeeCCCCC
Q 027228 5 RTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIALL-LSGATIVDQIVSITPAENYV 81 (226)
Q Consensus 5 ~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~~~~~~A~V~F~~~~aa~tAl~-Lng~~l~gr~I~V~~a~~~~ 81 (226)
++|||+|||+.+|+++|+++|+.||+|.+|.+..+ ..++|||+|.++++|..|+. |||..|.|+.|.|..+....
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 76 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN--PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMP 76 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS--SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC--CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCC
Confidence 48999999999999999999999999999999987 57899999999999999995 99999999999999876543
No 95
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=1.2e-15 Score=112.01 Aligned_cols=73 Identities=18% Similarity=0.268 Sum_probs=67.6
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCCCCcEEEEEEcChHHHHHHH-hhcCCeecceEEEEeeCCCCC
Q 027228 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPAENYV 81 (226)
Q Consensus 4 ~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~~~~~~A~V~F~~~~aa~tAl-~Lng~~l~gr~I~V~~a~~~~ 81 (226)
.++|||+|||+.+|+++|+++|+.||+|.+|.+.+ ++|||+|+++++|..|+ .|||..|.|+.|.|..+....
T Consensus 10 ~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 83 (92)
T 2dgt_A 10 STKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK-----DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRL 83 (92)
T ss_dssp SEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS-----SEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESSCCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC-----CEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccCCC
Confidence 57999999999999999999999999999999973 39999999999999999 699999999999999886543
No 96
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=7.4e-16 Score=110.99 Aligned_cols=71 Identities=20% Similarity=0.321 Sum_probs=66.4
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCCCCcEEEEEEcChHHHHHHHh-h-cCCeecceEEEEeeC
Q 027228 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIALL-L-SGATIVDQIVSITPA 77 (226)
Q Consensus 4 ~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~~~~~~A~V~F~~~~aa~tAl~-L-ng~~l~gr~I~V~~a 77 (226)
.++|||+|||+.+++++|+++|+.||+|.+|.+.++ .++|||+|.++++|..|+. | ||..|+|+.|.|..+
T Consensus 12 ~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~---kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~a 84 (85)
T 2ytc_A 12 ITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR---QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWG 84 (85)
T ss_dssp CCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG---GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEEC
T ss_pred ccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC---CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEec
Confidence 579999999999999999999999999999999975 5799999999999999995 7 999999999999865
No 97
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=7.6e-16 Score=112.66 Aligned_cols=74 Identities=19% Similarity=0.331 Sum_probs=68.0
Q ss_pred CccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCCCCcEEEEEEcChHHHHHHHh-hcCCeecceEEEEeeCCCCC
Q 027228 3 QTRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIALL-LSGATIVDQIVSITPAENYV 81 (226)
Q Consensus 3 ~~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~~~~~~A~V~F~~~~aa~tAl~-Lng~~l~gr~I~V~~a~~~~ 81 (226)
..++|||+|||+.+|+++|+++|+.||+|.+|.+.+ ++|||+|.++++|..|+. |||..|.|+.|.|..+....
T Consensus 8 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~-----~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 82 (90)
T 2dnp_A 8 NTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK-----DYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTKGQ 82 (90)
T ss_dssp CSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS-----SCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCCCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC-----CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCCCC
Confidence 357999999999999999999999999999999983 399999999999999995 99999999999999886543
No 98
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=6.8e-16 Score=117.15 Aligned_cols=79 Identities=18% Similarity=0.315 Sum_probs=71.2
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCcee--------EEEEEecC---CCCcEEEEEEcChHHHHHHHh-hcCCeecceE
Q 027228 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIE--------RIEILREY---GQSKTAFVTFKDAKALEIALL-LSGATIVDQI 71 (226)
Q Consensus 4 ~~tV~V~NLs~~tTe~~L~efFs~cG~I~--------sI~i~~d~---~~~~~A~V~F~~~~aa~tAl~-Lng~~l~gr~ 71 (226)
.++|||+|||+.+|+++|+++|+.||.|. .|.|..+. ...+||||+|.++++|..|+. |||..|.|+.
T Consensus 15 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 94 (113)
T 2cpe_A 15 NSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQGSK 94 (113)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEETTEE
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccCCCE
Confidence 58999999999999999999999999999 69998874 236899999999999999995 9999999999
Q ss_pred EEEeeCCCCCC
Q 027228 72 VSITPAENYVP 82 (226)
Q Consensus 72 I~V~~a~~~~~ 82 (226)
|.|..+.....
T Consensus 95 l~V~~a~~~~~ 105 (113)
T 2cpe_A 95 LKVSLARKKPP 105 (113)
T ss_dssp CEEECSSCCCC
T ss_pred EEEEECCCCCC
Confidence 99998766543
No 99
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.63 E-value=1.1e-16 Score=116.73 Aligned_cols=76 Identities=18% Similarity=0.317 Sum_probs=67.2
Q ss_pred cEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecC---CCCcEEEEEEcChHHHHHHH-hhcCCeecceEEEEeeCCCC
Q 027228 5 RTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREY---GQSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPAENY 80 (226)
Q Consensus 5 ~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~---~~~~~A~V~F~~~~aa~tAl-~Lng~~l~gr~I~V~~a~~~ 80 (226)
++|||+|||+.+++++|+++|+.||+|.+|.+..+. ...++|||+|.+++ +..|+ .|||..|+|+.|.|..+...
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 689999999999999999999999999999999875 24689999999999 99998 59999999999999987654
Q ss_pred C
Q 027228 81 V 81 (226)
Q Consensus 81 ~ 81 (226)
.
T Consensus 81 ~ 81 (90)
T 2ki2_A 81 K 81 (90)
T ss_dssp -
T ss_pred C
Confidence 3
No 100
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=8.6e-16 Score=113.81 Aligned_cols=73 Identities=16% Similarity=0.237 Sum_probs=67.9
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCCCCcEEEEEEcChHHHHHHHh-hcCCeec--ceEEEEeeCCC
Q 027228 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIALL-LSGATIV--DQIVSITPAEN 79 (226)
Q Consensus 4 ~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~~~~~~A~V~F~~~~aa~tAl~-Lng~~l~--gr~I~V~~a~~ 79 (226)
.++|||+|||+.+|+++|+++|+.||+|.+|.+..+ .++|||+|.++++|..|+. |||..|. |+.|.|..+..
T Consensus 17 ~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a~~ 92 (97)
T 1why_A 17 TTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG---DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAKS 92 (97)
T ss_dssp CSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS---SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEECCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC---CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEECCC
Confidence 579999999999999999999999999999999865 5699999999999999995 9999999 99999997754
No 101
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.63 E-value=4.2e-16 Score=114.91 Aligned_cols=76 Identities=26% Similarity=0.369 Sum_probs=69.4
Q ss_pred ccEEEEeCCCCcccHHHHH----HHcccCCceeEEEEEecCCCCcEEEEEEcChHHHHHHH-hhcCCeecceEEEEeeCC
Q 027228 4 TRTVQVKNVSDLAHEREIH----EFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPAE 78 (226)
Q Consensus 4 ~~tV~V~NLs~~tTe~~L~----efFs~cG~I~sI~i~~d~~~~~~A~V~F~~~~aa~tAl-~Lng~~l~gr~I~V~~a~ 78 (226)
.++|||+|||+.+++++|+ ++|+.||+|.+|.+.+.+...++|||+|.++++|..|+ .|||..|.|+.|.|..+.
T Consensus 8 ~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 87 (97)
T 1nu4_A 8 NHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYAK 87 (97)
T ss_dssp CSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEEEEcc
Confidence 5899999999999999999 99999999999999854444689999999999999999 599999999999998775
Q ss_pred C
Q 027228 79 N 79 (226)
Q Consensus 79 ~ 79 (226)
.
T Consensus 88 ~ 88 (97)
T 1nu4_A 88 T 88 (97)
T ss_dssp S
T ss_pred C
Confidence 4
No 102
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=1.7e-15 Score=112.56 Aligned_cols=74 Identities=23% Similarity=0.323 Sum_probs=67.6
Q ss_pred CCccEEEEeCCCCcccHHHHHHHcccC--CceeEEEEEecCCCCcEEEEEEcChHHHHHHHh-hcCCeecceEEEEeeCC
Q 027228 2 QQTRTVQVKNVSDLAHEREIHEFFSFS--GDIERIEILREYGQSKTAFVTFKDAKALEIALL-LSGATIVDQIVSITPAE 78 (226)
Q Consensus 2 s~~~tV~V~NLs~~tTe~~L~efFs~c--G~I~sI~i~~d~~~~~~A~V~F~~~~aa~tAl~-Lng~~l~gr~I~V~~a~ 78 (226)
...++|||+|||+.+|+++|+++|+.| |.|.+|.+. .+||||+|.++++|..|+. |||..|.|+.|.|..+.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 87 (99)
T 2cpd_A 13 SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI-----RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAK 87 (99)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC-----SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECCC
T ss_pred CCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe-----CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 346899999999999999999999999 999999885 5699999999999999995 99999999999999875
Q ss_pred CC
Q 027228 79 NY 80 (226)
Q Consensus 79 ~~ 80 (226)
..
T Consensus 88 ~~ 89 (99)
T 2cpd_A 88 PV 89 (99)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 103
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.63 E-value=1.3e-15 Score=119.46 Aligned_cols=79 Identities=20% Similarity=0.349 Sum_probs=72.0
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCC---CCcEEEEEEcChHHHHHHHh-hcCCeecceEEEEeeCCC
Q 027228 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYG---QSKTAFVTFKDAKALEIALL-LSGATIVDQIVSITPAEN 79 (226)
Q Consensus 4 ~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~~---~~~~A~V~F~~~~aa~tAl~-Lng~~l~gr~I~V~~a~~ 79 (226)
.++|||+|||+.+++++|+++|+.||+|.+|.|..+.. ..+||||+|.++++|..|+. |||..|.|+.|.|..+..
T Consensus 42 ~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 121 (139)
T 1u6f_A 42 LRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALAAS 121 (139)
T ss_dssp TSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEESSC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 58999999999999999999999999999999998863 36799999999999999995 999999999999998865
Q ss_pred CCC
Q 027228 80 YVP 82 (226)
Q Consensus 80 ~~~ 82 (226)
...
T Consensus 122 ~~~ 124 (139)
T 1u6f_A 122 GHQ 124 (139)
T ss_dssp CCC
T ss_pred CCC
Confidence 543
No 104
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.63 E-value=1.9e-15 Score=112.96 Aligned_cols=71 Identities=15% Similarity=0.223 Sum_probs=66.5
Q ss_pred CccEEEEeCCCC-cccHHHHHHHcccCCceeEEEEEecCCCCcEEEEEEcChHHHHHHHh-hcCCeecceEEEEeeCC
Q 027228 3 QTRTVQVKNVSD-LAHEREIHEFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIALL-LSGATIVDQIVSITPAE 78 (226)
Q Consensus 3 ~~~tV~V~NLs~-~tTe~~L~efFs~cG~I~sI~i~~d~~~~~~A~V~F~~~~aa~tAl~-Lng~~l~gr~I~V~~a~ 78 (226)
+.++|||+|||+ .+++++|+++|+.||+|.+|.+. .+||||+|.++++|..|+. |||..|+|+.|.|..+.
T Consensus 21 ~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~-----~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 93 (97)
T 2xnq_A 21 MKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-----NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVSS 93 (97)
T ss_dssp TTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC-----SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEECC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-----CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecC
Confidence 468999999999 99999999999999999999994 6799999999999999995 99999999999998764
No 105
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=4.9e-16 Score=119.08 Aligned_cols=76 Identities=16% Similarity=0.239 Sum_probs=68.2
Q ss_pred ccEEEEeCCCC-cccHHHHHHHcccCCceeEEEEEecCCCCcEEEEEEcChHHHHHHH-hhcC--CeecceEEEEeeCCC
Q 027228 4 TRTVQVKNVSD-LAHEREIHEFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIAL-LLSG--ATIVDQIVSITPAEN 79 (226)
Q Consensus 4 ~~tV~V~NLs~-~tTe~~L~efFs~cG~I~sI~i~~d~~~~~~A~V~F~~~~aa~tAl-~Lng--~~l~gr~I~V~~a~~ 79 (226)
.++|||+|||+ .+||++|+++|+.||+|.+|.|+++ .+||||+|+++++|..|+ .||| ..|.|++|.|..+..
T Consensus 15 ~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~---kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~ 91 (102)
T 1x4d_A 15 RRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK---INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQK 91 (102)
T ss_dssp CCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS---SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEECC
T ss_pred CCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC---CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEECCC
Confidence 57999999999 9999999999999999999999865 469999999999999999 5775 469999999998876
Q ss_pred CCC
Q 027228 80 YVP 82 (226)
Q Consensus 80 ~~~ 82 (226)
+..
T Consensus 92 ~~~ 94 (102)
T 1x4d_A 92 YKR 94 (102)
T ss_dssp CTT
T ss_pred CCC
Confidence 543
No 106
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.63 E-value=8.3e-16 Score=118.79 Aligned_cols=78 Identities=22% Similarity=0.270 Sum_probs=70.8
Q ss_pred CccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCC---CCcEEEEEEcChHHHHHHH-hhcCCeecceEEEEeeCC
Q 027228 3 QTRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYG---QSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPAE 78 (226)
Q Consensus 3 ~~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~~---~~~~A~V~F~~~~aa~tAl-~Lng~~l~gr~I~V~~a~ 78 (226)
..++|||+|||+.+|+++|+++|+.||.|.+|.|..+.. ..++|||+|.++++|..|+ .|||..|.|+.|.|..+.
T Consensus 21 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 100 (126)
T 3ex7_B 21 EGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCF 100 (126)
T ss_dssp SSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEESE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEec
Confidence 357999999999999999999999999999999998752 3679999999999999999 599999999999999775
Q ss_pred CC
Q 027228 79 NY 80 (226)
Q Consensus 79 ~~ 80 (226)
..
T Consensus 101 ~~ 102 (126)
T 3ex7_B 101 VR 102 (126)
T ss_dssp ES
T ss_pred CC
Confidence 43
No 107
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=2e-15 Score=112.75 Aligned_cols=78 Identities=14% Similarity=0.208 Sum_probs=70.0
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCC---CCcEEEEEEcChHHHHHHHhhcCCeecceEEEEeeCCCC
Q 027228 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYG---QSKTAFVTFKDAKALEIALLLSGATIVDQIVSITPAENY 80 (226)
Q Consensus 4 ~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~~---~~~~A~V~F~~~~aa~tAl~Lng~~l~gr~I~V~~a~~~ 80 (226)
.++|||+|||+.+++++|+++|+.||+|.+|.|..+.. ..+||||+|+++++|..|+. ++..|+|+.|.|..+...
T Consensus 15 ~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~g~~l~v~~a~~~ 93 (103)
T 2cqg_A 15 TSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS-QRHMIDGRWCDCKLPNSK 93 (103)
T ss_dssp CCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH-SCEEETTEEEEEECCCTT
T ss_pred CCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH-cCCeeCCeEEEEEecCCC
Confidence 57899999999999999999999999999999998853 35799999999999999998 688999999999987654
Q ss_pred CC
Q 027228 81 VP 82 (226)
Q Consensus 81 ~~ 82 (226)
..
T Consensus 94 ~~ 95 (103)
T 2cqg_A 94 QS 95 (103)
T ss_dssp CC
T ss_pred Cc
Confidence 33
No 108
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=7.3e-16 Score=113.61 Aligned_cols=76 Identities=16% Similarity=0.208 Sum_probs=68.3
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEE-EEecCCCCcEEEEEEcChHHHHHHHh-hcCCeecceEEEEeeCCCC
Q 027228 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIE-ILREYGQSKTAFVTFKDAKALEIALL-LSGATIVDQIVSITPAENY 80 (226)
Q Consensus 4 ~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~-i~~d~~~~~~A~V~F~~~~aa~tAl~-Lng~~l~gr~I~V~~a~~~ 80 (226)
.++|||+|||+.+|+++|+++|+.||+|.+++ +..++. .+.|||+|.+++++..|+. |||..|+|+.|.|..+.+.
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~-~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 92 (96)
T 2e44_A 15 IRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSE-TAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPDE 92 (96)
T ss_dssp CCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSS-SEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCCC
T ss_pred CCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCC-CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCcc
Confidence 57899999999999999999999999999995 776654 3449999999999999995 9999999999999987654
No 109
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=1.1e-15 Score=113.41 Aligned_cols=74 Identities=19% Similarity=0.317 Sum_probs=67.2
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCCCCcEEEEEEcChHHHHHHH-hhcCCeecceEEEEeeCCC
Q 027228 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPAEN 79 (226)
Q Consensus 4 ~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~~~~~~A~V~F~~~~aa~tAl-~Lng~~l~gr~I~V~~a~~ 79 (226)
.++|||+|||+.+|+++|+++|+.||.|. +.+..+ ...+||||+|.++++|..|+ .|||..|.|+.|.|..+..
T Consensus 19 ~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~-~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 93 (97)
T 2e5j_A 19 AADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ-GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQ 93 (97)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE-TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCC
T ss_pred CCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC-CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCC
Confidence 57999999999999999999999999997 677655 35789999999999999999 6999999999999997754
No 110
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.62 E-value=1e-15 Score=115.49 Aligned_cols=71 Identities=8% Similarity=0.127 Sum_probs=66.9
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCCCCcEEEEEEcChHHHHHHH-hhcCCeecceEEEEeeC
Q 027228 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPA 77 (226)
Q Consensus 4 ~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~~~~~~A~V~F~~~~aa~tAl-~Lng~~l~gr~I~V~~a 77 (226)
+..|+|+||++.+||++|+++|+.+|+|.++.+.. ++|||||+|.++++|+.|+ .|||..|.||+|+|..+
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~---~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A 78 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL---NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESP 78 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET---TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC---CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEEC
Confidence 46899999999999999999999999999999975 4789999999999999999 69999999999999877
No 111
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.62 E-value=1.1e-15 Score=119.27 Aligned_cols=74 Identities=23% Similarity=0.368 Sum_probs=68.2
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecC---CCCcEEEEEEcChHHHHHHH-hhcCCeecceEEEEeeC
Q 027228 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREY---GQSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPA 77 (226)
Q Consensus 4 ~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~---~~~~~A~V~F~~~~aa~tAl-~Lng~~l~gr~I~V~~a 77 (226)
.++|||+|||+.+|+++|+++|+.+|+|.+|.+..++ ...++|||+|.++++|..|+ .|||..|+|+.|.|..+
T Consensus 63 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~A 140 (140)
T 2ku7_A 63 KRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 140 (140)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC-
T ss_pred CcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEeC
Confidence 5799999999999999999999999999999999874 34789999999999999999 69999999999999753
No 112
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.62 E-value=8.3e-16 Score=121.19 Aligned_cols=76 Identities=21% Similarity=0.253 Sum_probs=69.9
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecC---CCCcEEEEEEcChHHHHHHHh-hcCCeecceEEEEeeCCC
Q 027228 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREY---GQSKTAFVTFKDAKALEIALL-LSGATIVDQIVSITPAEN 79 (226)
Q Consensus 4 ~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~---~~~~~A~V~F~~~~aa~tAl~-Lng~~l~gr~I~V~~a~~ 79 (226)
.++|||+|||+.+|+++|+++|+.||+|.+|.|..+. ...+||||+|+++++|..|+. |||..|+|+.|.|..+..
T Consensus 46 ~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~a~~ 125 (129)
T 2kxn_B 46 NCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFSIT 125 (129)
T ss_dssp SSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESCCSS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecC
Confidence 5789999999999999999999999999999999875 246899999999999999995 999999999999987644
No 113
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=7.9e-16 Score=114.98 Aligned_cols=77 Identities=18% Similarity=0.165 Sum_probs=70.3
Q ss_pred ccEEEEeCCCCcccHHHHHHHccc-CCceeEEEEEecC--CCCcEEEEEEcChHHHHHHHh-hcCCe-ecceEEEEeeCC
Q 027228 4 TRTVQVKNVSDLAHEREIHEFFSF-SGDIERIEILREY--GQSKTAFVTFKDAKALEIALL-LSGAT-IVDQIVSITPAE 78 (226)
Q Consensus 4 ~~tV~V~NLs~~tTe~~L~efFs~-cG~I~sI~i~~d~--~~~~~A~V~F~~~~aa~tAl~-Lng~~-l~gr~I~V~~a~ 78 (226)
.++|||+|||+.+|+++|+++|+. ||+|.+|.|..+. ...+||||+|.++++|..|+. |||.. |.|+.|.|..+.
T Consensus 9 ~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~~a~ 88 (104)
T 2dhg_A 9 EYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAI 88 (104)
T ss_dssp CCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCCBCC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEEEcc
Confidence 579999999999999999999999 9999999999886 236799999999999999995 99999 999999998875
Q ss_pred CC
Q 027228 79 NY 80 (226)
Q Consensus 79 ~~ 80 (226)
..
T Consensus 89 ~~ 90 (104)
T 2dhg_A 89 PK 90 (104)
T ss_dssp CC
T ss_pred CC
Confidence 44
No 114
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=2.3e-15 Score=114.71 Aligned_cols=76 Identities=14% Similarity=0.186 Sum_probs=68.0
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCCCCcEEEEEEcChHHHHHHHh-h--cCCeecceEEEEeeCCCC
Q 027228 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIALL-L--SGATIVDQIVSITPAENY 80 (226)
Q Consensus 4 ~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~~~~~~A~V~F~~~~aa~tAl~-L--ng~~l~gr~I~V~~a~~~ 80 (226)
.++|||+|||+.+|+++|+++|+.||+|.+|.|.++ .+||||+|+++++|..|+. | ++..|.|++|.|..+..-
T Consensus 15 ~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~---kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~~ 91 (101)
T 2cq1_A 15 SRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG---KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSNHK 91 (101)
T ss_dssp CSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT---TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEECSCS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC---CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEcCcc
Confidence 579999999999999999999999999999999865 6799999999999999994 4 578899999999987654
Q ss_pred CC
Q 027228 81 VP 82 (226)
Q Consensus 81 ~~ 82 (226)
..
T Consensus 92 ~~ 93 (101)
T 2cq1_A 92 EL 93 (101)
T ss_dssp SC
T ss_pred cC
Confidence 33
No 115
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=3.9e-16 Score=123.16 Aligned_cols=76 Identities=18% Similarity=0.176 Sum_probs=68.2
Q ss_pred CccEEEEeCCCCcccHHHHHHHcccCCce----eEEEEEecC--CCCcEEEEEEcChHHHHHHHhhcCCeecceEEEEee
Q 027228 3 QTRTVQVKNVSDLAHEREIHEFFSFSGDI----ERIEILREY--GQSKTAFVTFKDAKALEIALLLSGATIVDQIVSITP 76 (226)
Q Consensus 3 ~~~tV~V~NLs~~tTe~~L~efFs~cG~I----~sI~i~~d~--~~~~~A~V~F~~~~aa~tAl~Lng~~l~gr~I~V~~ 76 (226)
+.++|||+|||+++|+++|++||+.||+| .+|.|+.+. ..+|||||+|+++++++.||.+|+..|+||.|.|.+
T Consensus 22 ~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~~~~~l~gR~i~V~~ 101 (123)
T 2dha_A 22 NQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELFR 101 (123)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTTTTEESSSCEECCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 35799999999999999999999999875 799999875 236899999999999999998899999999999987
Q ss_pred CC
Q 027228 77 AE 78 (226)
Q Consensus 77 a~ 78 (226)
+.
T Consensus 102 a~ 103 (123)
T 2dha_A 102 ST 103 (123)
T ss_dssp EC
T ss_pred CC
Confidence 64
No 116
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=6.4e-16 Score=118.44 Aligned_cols=74 Identities=22% Similarity=0.158 Sum_probs=67.9
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCCCCcEEEEEEcChHHHHHHH-hhcCCeecceEEEEeeCCCC
Q 027228 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPAENY 80 (226)
Q Consensus 4 ~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~~~~~~A~V~F~~~~aa~tAl-~Lng~~l~gr~I~V~~a~~~ 80 (226)
.++|||+|||+.+|+++|+++|+.||+|.+|.|.. ..++|||+|.++++|..|+ .|||..|.|+.|.|..+...
T Consensus 10 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~---~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 84 (111)
T 1whx_A 10 KTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE---GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIG 84 (111)
T ss_dssp EEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS---SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEETT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC---CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence 47999999999999999999999999999999975 3579999999999999999 59999999999999977553
No 117
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=1.4e-15 Score=119.84 Aligned_cols=76 Identities=13% Similarity=0.199 Sum_probs=68.5
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCCCCcEEEEEEcChHHHHHHH-hhc--CCeecceEEEEeeCCCC
Q 027228 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIAL-LLS--GATIVDQIVSITPAENY 80 (226)
Q Consensus 4 ~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~~~~~~A~V~F~~~~aa~tAl-~Ln--g~~l~gr~I~V~~a~~~ 80 (226)
+++|||+|||+.+||++|+++|+.||+|.+|.|+++ .+||||+|+++++|..|+ .|| +..|.|++|.|..+...
T Consensus 31 s~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~---kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~k 107 (119)
T 2ad9_A 31 SRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG---KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHK 107 (119)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG---GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEECSSS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC---CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEccCC
Confidence 579999999999999999999999999999999976 579999999999999999 476 57899999999987654
Q ss_pred CC
Q 027228 81 VP 82 (226)
Q Consensus 81 ~~ 82 (226)
..
T Consensus 108 ~~ 109 (119)
T 2ad9_A 108 EL 109 (119)
T ss_dssp SC
T ss_pred CC
Confidence 43
No 118
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.61 E-value=2e-15 Score=115.27 Aligned_cols=71 Identities=23% Similarity=0.358 Sum_probs=66.9
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCCCCcEEEEEEcChHHHHHHH-hhcCCeecceEEEEeeCCC
Q 027228 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPAEN 79 (226)
Q Consensus 4 ~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~~~~~~A~V~F~~~~aa~tAl-~Lng~~l~gr~I~V~~a~~ 79 (226)
.++|||+|||+.+|+++|+++|+.||+|.+|.+. .+||||+|.+.++|..|+ .|||..|+|+.|.|..+..
T Consensus 31 ~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~-----kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 102 (108)
T 2jvo_A 31 NTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL-----NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSKL 102 (108)
T ss_dssp CSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE-----TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCSC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE-----CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecC
Confidence 5899999999999999999999999999999998 679999999999999999 5999999999999987644
No 119
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.61 E-value=1.3e-15 Score=121.80 Aligned_cols=78 Identities=21% Similarity=0.282 Sum_probs=71.3
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecC---CCCcEEEEEEcChHHHHHHH-hhcCCeecceEEEEeeCCC
Q 027228 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREY---GQSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPAEN 79 (226)
Q Consensus 4 ~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~---~~~~~A~V~F~~~~aa~tAl-~Lng~~l~gr~I~V~~a~~ 79 (226)
.++|||+|||+.+|+++|+++|+.||+|.+|.|..+. ...|||||+|.+++++..|+ .|||..|.|+.|.|..+..
T Consensus 70 ~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 149 (158)
T 2kn4_A 70 MTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARY 149 (158)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 5799999999999999999999999999999999875 34689999999999999999 5999999999999998765
Q ss_pred CC
Q 027228 80 YV 81 (226)
Q Consensus 80 ~~ 81 (226)
..
T Consensus 150 ~~ 151 (158)
T 2kn4_A 150 GR 151 (158)
T ss_dssp SS
T ss_pred CC
Confidence 43
No 120
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.61 E-value=2.3e-15 Score=115.47 Aligned_cols=73 Identities=16% Similarity=0.231 Sum_probs=66.5
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCCCCcEEEEEEcChHHHHHHH-hhcCCe--ecceEEEEeeCCC
Q 027228 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIAL-LLSGAT--IVDQIVSITPAEN 79 (226)
Q Consensus 4 ~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~~~~~~A~V~F~~~~aa~tAl-~Lng~~--l~gr~I~V~~a~~ 79 (226)
+++|||+|||+.+|+++|+++|+.||+|.+|.|++. +++|||+|++.++|..|+ .|||.. |.||+|.|.-+..
T Consensus 21 s~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~---kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S~~ 96 (100)
T 3r27_A 21 SPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK---KRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYSTS 96 (100)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT---TTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEECSC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC---CCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEeccc
Confidence 689999999999999999999999999999999854 579999999999999999 599876 7899999987644
No 121
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.61 E-value=1e-15 Score=121.93 Aligned_cols=74 Identities=23% Similarity=0.362 Sum_probs=69.0
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCCCCcEEEEEEcChHHHHHHHh-hcCCeecceEEEEeeCCC
Q 027228 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIALL-LSGATIVDQIVSITPAEN 79 (226)
Q Consensus 4 ~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~~~~~~A~V~F~~~~aa~tAl~-Lng~~l~gr~I~V~~a~~ 79 (226)
.++|||+|||+.+|+++|+++|+.||+|.+|++..+ +.+||||+|.+++++..|+. |||..|.|+.|.|..+..
T Consensus 73 ~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 147 (150)
T 2i2y_A 73 DCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN--PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNG 147 (150)
T ss_dssp SCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS--SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC--CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCC
Confidence 579999999999999999999999999999999877 47899999999999999995 999999999999987643
No 122
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.61 E-value=9.7e-16 Score=114.32 Aligned_cols=75 Identities=21% Similarity=0.329 Sum_probs=69.0
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCC--CCcEEEEEEcChHHHHHHHhhcCCeecceEEEEeeCCC
Q 027228 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYG--QSKTAFVTFKDAKALEIALLLSGATIVDQIVSITPAEN 79 (226)
Q Consensus 4 ~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~~--~~~~A~V~F~~~~aa~tAl~Lng~~l~gr~I~V~~a~~ 79 (226)
.++|||+|||+.+++++|+++|+.||.|.+|.|..+.. ..++|||+|+++++|..|+. ||..|+|+.|.|..+..
T Consensus 9 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~-~~~~~~g~~l~v~~a~~ 85 (102)
T 2xs2_A 9 PNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE-SQINFHGKKLKLGPAIR 85 (102)
T ss_dssp EEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT-CCCEETTEECEEEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh-CCCeECCEEEEEEECCc
Confidence 57999999999999999999999999999999999862 35899999999999999999 99999999999987643
No 123
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.61 E-value=8.9e-16 Score=121.87 Aligned_cols=74 Identities=22% Similarity=0.210 Sum_probs=67.1
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCcee--EEEEEecC--CCCcEEEEEEcChHHHHHHHhhcCCeecceEEEEeeCC
Q 027228 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIE--RIEILREY--GQSKTAFVTFKDAKALEIALLLSGATIVDQIVSITPAE 78 (226)
Q Consensus 4 ~~tV~V~NLs~~tTe~~L~efFs~cG~I~--sI~i~~d~--~~~~~A~V~F~~~~aa~tAl~Lng~~l~gr~I~V~~a~ 78 (226)
.++|||+|||+++||++|++||+.| .|. +|.|+.++ ...|||||+|+++++|+.||.+++..|+||.|.|.++.
T Consensus 42 ~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~~~~~l~gR~I~V~~a~ 119 (126)
T 2hgm_A 42 DGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKSS 119 (126)
T ss_dssp CCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTTTTCCBTTBCCCCEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHHCCCEECCEEEEEEECC
Confidence 5799999999999999999999999 676 99998876 34789999999999999999889999999999998763
No 124
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=2.4e-15 Score=113.18 Aligned_cols=80 Identities=14% Similarity=0.170 Sum_probs=69.8
Q ss_pred CccEEEEeCCCCcccHHHHHHHcccCCc-eeEEEEE-ecCC---CCcEEEEEEcChHHHHHHHh-hc--CCeecceEEEE
Q 027228 3 QTRTVQVKNVSDLAHEREIHEFFSFSGD-IERIEIL-REYG---QSKTAFVTFKDAKALEIALL-LS--GATIVDQIVSI 74 (226)
Q Consensus 3 ~~~tV~V~NLs~~tTe~~L~efFs~cG~-I~sI~i~-~d~~---~~~~A~V~F~~~~aa~tAl~-Ln--g~~l~gr~I~V 74 (226)
..++|||+|||+.+|+++|+++|+.||+ |.+|.+. .+.. ..+||||+|.++++|..|+. || +..|.|+.|.|
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~V 86 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAV 86 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEE
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEEE
Confidence 3579999999999999999999999999 9999998 4542 46899999999999999995 85 58999999999
Q ss_pred eeCCCCCC
Q 027228 75 TPAENYVP 82 (226)
Q Consensus 75 ~~a~~~~~ 82 (226)
..+.....
T Consensus 87 ~~a~~~~~ 94 (109)
T 2dis_A 87 DWAEPEID 94 (109)
T ss_dssp EESCSSCS
T ss_pred EEcCCCCC
Confidence 98765433
No 125
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.61 E-value=2.1e-15 Score=114.30 Aligned_cols=71 Identities=18% Similarity=0.313 Sum_probs=66.8
Q ss_pred ccEEEEeCCCCc-ccHHHHHHHcccCCceeEEEEEecCCCCcEEEEEEcChHHHHHHH-hhcCCeecceEEEEeeCCC
Q 027228 4 TRTVQVKNVSDL-AHEREIHEFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPAEN 79 (226)
Q Consensus 4 ~~tV~V~NLs~~-tTe~~L~efFs~cG~I~sI~i~~d~~~~~~A~V~F~~~~aa~tAl-~Lng~~l~gr~I~V~~a~~ 79 (226)
.++|||+|||+. +|+++|+++|+.||+|.+|.| ..++|||+|+++++|..|+ .|||..|+|+.|.|..+..
T Consensus 27 ~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i-----~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 99 (110)
T 1wf1_A 27 NSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV-----HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAGE 99 (110)
T ss_dssp SSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE-----ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESCC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE-----eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCC
Confidence 479999999999 999999999999999999999 3679999999999999999 7999999999999998754
No 126
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.60 E-value=2.3e-15 Score=118.42 Aligned_cols=77 Identities=29% Similarity=0.424 Sum_probs=70.8
Q ss_pred cEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCC--CCcEEEEEEcChHHHHHHH-hhcCCeecceEEEEeeCCCCC
Q 027228 5 RTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYG--QSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPAENYV 81 (226)
Q Consensus 5 ~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~~--~~~~A~V~F~~~~aa~tAl-~Lng~~l~gr~I~V~~a~~~~ 81 (226)
|+|||+|||+++|+++|+++|+.||+|.+|.+..++. ..++|||+|.++++|..|+ .|||..|.|+.|.|..+....
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~ 80 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQ 80 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCC
Confidence 6899999999999999999999999999999998762 4579999999999999999 899999999999999875543
No 127
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.60 E-value=1.8e-15 Score=115.76 Aligned_cols=75 Identities=15% Similarity=0.181 Sum_probs=67.1
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCCCCcEEEEEEcChHHHHHHHh-hcCC--eecceEEEEeeCCCC
Q 027228 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIALL-LSGA--TIVDQIVSITPAENY 80 (226)
Q Consensus 4 ~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~~~~~~A~V~F~~~~aa~tAl~-Lng~--~l~gr~I~V~~a~~~ 80 (226)
.++|||+|||+.++|++|+++|+.||+|.+|.|.++ ++||||+|++.++|..|+. ||+. .|.|++|.|..+...
T Consensus 15 ~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~---kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a~~~ 91 (104)
T 1wex_A 15 SPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF---KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYSTSK 91 (104)
T ss_dssp CSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT---TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEECSSS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC---CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEccCc
Confidence 579999999999999999999999999999999864 6799999999999999994 7654 599999999987654
Q ss_pred C
Q 027228 81 V 81 (226)
Q Consensus 81 ~ 81 (226)
.
T Consensus 92 ~ 92 (104)
T 1wex_A 92 R 92 (104)
T ss_dssp S
T ss_pred c
Confidence 3
No 128
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.60 E-value=1.6e-15 Score=120.18 Aligned_cols=77 Identities=18% Similarity=0.241 Sum_probs=69.5
Q ss_pred ccEEEEeCCCCcccHHHHH----HHcccCCceeEEEEEecCCCCcEEEEEEcChHHHHHHH-hhcCCeecceEEEEeeCC
Q 027228 4 TRTVQVKNVSDLAHEREIH----EFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPAE 78 (226)
Q Consensus 4 ~~tV~V~NLs~~tTe~~L~----efFs~cG~I~sI~i~~d~~~~~~A~V~F~~~~aa~tAl-~Lng~~l~gr~I~V~~a~ 78 (226)
.++|||+|||+.+++++|+ ++|+.||+|.+|.+...+...|||||+|.++++|..|+ .|||..|.|++|.|..+.
T Consensus 29 ~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~~a~ 108 (127)
T 2a3j_A 29 SQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVITFSE 108 (127)
T ss_dssp CSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEEEcc
Confidence 5799999999999999876 79999999999999766566889999999999999999 699999999999999775
Q ss_pred CC
Q 027228 79 NY 80 (226)
Q Consensus 79 ~~ 80 (226)
.-
T Consensus 109 ~~ 110 (127)
T 2a3j_A 109 TP 110 (127)
T ss_dssp CC
T ss_pred Cc
Confidence 43
No 129
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.60 E-value=1.7e-15 Score=111.59 Aligned_cols=75 Identities=27% Similarity=0.264 Sum_probs=66.5
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCCCCcEEEEEEcChHHHHHHHh-hcCCeecceEEEEeeCCCC
Q 027228 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIALL-LSGATIVDQIVSITPAENY 80 (226)
Q Consensus 4 ~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~~~~~~A~V~F~~~~aa~tAl~-Lng~~l~gr~I~V~~a~~~ 80 (226)
.++|||+|||+.+|+++|+++|+.||+|..+ ...+...++|||+|.++++|..|+. |||..|.|+.|.|..+.+.
T Consensus 16 ~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~--~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 91 (96)
T 1fjc_A 16 ARTLLAKNLSFNITEDELKEVFEDALEIRLV--SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEK 91 (96)
T ss_dssp GGEEEEESCCSSCCHHHHHHHHCSEEEECCE--EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECSSS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe--CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 5799999999999999999999999999888 3333346899999999999999995 9999999999999987543
No 130
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.60 E-value=4.6e-16 Score=115.88 Aligned_cols=78 Identities=17% Similarity=0.149 Sum_probs=68.2
Q ss_pred CccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecC---CCCcEEEEEEcChHHHHHHHhhcCCeecceEEEEeeCCC
Q 027228 3 QTRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREY---GQSKTAFVTFKDAKALEIALLLSGATIVDQIVSITPAEN 79 (226)
Q Consensus 3 ~~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~---~~~~~A~V~F~~~~aa~tAl~Lng~~l~gr~I~V~~a~~ 79 (226)
..++|||+|||+.+|+++|+++|+.||.|.+ .++.+. ...+||||+|.+++++..|+.|||..|.|+.|.|..+..
T Consensus 16 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~~ 94 (101)
T 1fj7_A 16 TPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPKG 94 (101)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGCCBTTBCCEEECCSC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHhcCCcEECCcEEEEEEcCC
Confidence 3579999999999999999999999999988 444432 357899999999999999999999999999999998755
Q ss_pred CC
Q 027228 80 YV 81 (226)
Q Consensus 80 ~~ 81 (226)
..
T Consensus 95 ~~ 96 (101)
T 1fj7_A 95 RD 96 (101)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 131
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.60 E-value=1.8e-15 Score=112.25 Aligned_cols=72 Identities=15% Similarity=0.222 Sum_probs=66.9
Q ss_pred ccEEEEeCCCC-cccHHHHHHHcccCCceeEEEEEecCCCCcEEEEEEcChHHHHHHHh-hcCCeecceEEEEeeCCCC
Q 027228 4 TRTVQVKNVSD-LAHEREIHEFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIALL-LSGATIVDQIVSITPAENY 80 (226)
Q Consensus 4 ~~tV~V~NLs~-~tTe~~L~efFs~cG~I~sI~i~~d~~~~~~A~V~F~~~~aa~tAl~-Lng~~l~gr~I~V~~a~~~ 80 (226)
.++|||+|||+ .+|+++|+++|+.||+|.+|.+. .++|||+|.++++|..|+. |||..|.|+.|.|..+...
T Consensus 10 ~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~-----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 83 (96)
T 2kvi_A 10 KSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-----NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSSSN 83 (96)
T ss_dssp CEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE-----TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEECC
T ss_pred CCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-----CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcCcC
Confidence 68999999999 99999999999999999999995 6799999999999999995 9999999999999887543
No 132
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.59 E-value=1.1e-15 Score=117.56 Aligned_cols=72 Identities=14% Similarity=0.246 Sum_probs=65.0
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCCCCcEEEEEEcChHHHHHHHh-hcCCeecceE-----EEEeeC
Q 027228 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIALL-LSGATIVDQI-----VSITPA 77 (226)
Q Consensus 4 ~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~~~~~~A~V~F~~~~aa~tAl~-Lng~~l~gr~-----I~V~~a 77 (226)
.++|||+|||+.+|+++|++||+.||+|.+|.|..+ +||||+|+++++|..|+. |||..|+|+. |.|...
T Consensus 16 ~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~----g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~~~ 91 (115)
T 3beg_B 16 ENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD----GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVD 91 (115)
T ss_dssp -CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT----SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEEEC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC----CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEeccC
Confidence 478999999999999999999999999999999866 799999999999999995 9999999998 777665
Q ss_pred CC
Q 027228 78 EN 79 (226)
Q Consensus 78 ~~ 79 (226)
..
T Consensus 92 ~~ 93 (115)
T 3beg_B 92 GP 93 (115)
T ss_dssp C-
T ss_pred CC
Confidence 44
No 133
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.59 E-value=4.3e-16 Score=125.42 Aligned_cols=76 Identities=18% Similarity=0.156 Sum_probs=69.2
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCC--CCcEEEEEEcChHHHHHHHhhcCCeecceEEEEeeCCCC
Q 027228 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYG--QSKTAFVTFKDAKALEIALLLSGATIVDQIVSITPAENY 80 (226)
Q Consensus 4 ~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~~--~~~~A~V~F~~~~aa~tAl~Lng~~l~gr~I~V~~a~~~ 80 (226)
.++|||+|||+++||++|++||+.|| |.+|.|+.+.. ..+||||+|+++++|+.||.||+..|+||.|.|..+..-
T Consensus 46 ~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al~~~g~~l~gR~i~V~~a~~~ 123 (139)
T 2hgn_A 46 GHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELFLNSTT 123 (139)
T ss_dssp CCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHTTCCSCSSSSCCCCCEECCCS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHHhhCCCEECCEEEEEEECCCC
Confidence 57899999999999999999999999 77999998763 468999999999999999999999999999999877554
No 134
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=2.6e-15 Score=111.76 Aligned_cols=74 Identities=19% Similarity=0.212 Sum_probs=65.3
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecC--CCCcEEEEEEcChHHHHHHHh-hcCCeecceEEEEeeCCCC
Q 027228 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREY--GQSKTAFVTFKDAKALEIALL-LSGATIVDQIVSITPAENY 80 (226)
Q Consensus 4 ~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~--~~~~~A~V~F~~~~aa~tAl~-Lng~~l~gr~I~V~~a~~~ 80 (226)
.++|||+|||+.+|+++|+++|+.||+| +++.+. ...+||||+|.++++|..|+. |||..|.|+.|.|..+...
T Consensus 15 ~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 91 (101)
T 2fc9_A 15 SKTLVLSNLSYSATEETLQEVFEKATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPR 91 (101)
T ss_dssp CSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEECSSC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEcCCC
Confidence 6899999999999999999999999988 444442 346899999999999999995 9999999999999987554
No 135
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.59 E-value=4.4e-15 Score=124.56 Aligned_cols=79 Identities=19% Similarity=0.277 Sum_probs=71.3
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCC--CCcEEEEEEcChHHHHHHHhhcCCeecceEEEEeeCCCCC
Q 027228 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYG--QSKTAFVTFKDAKALEIALLLSGATIVDQIVSITPAENYV 81 (226)
Q Consensus 4 ~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~~--~~~~A~V~F~~~~aa~tAl~Lng~~l~gr~I~V~~a~~~~ 81 (226)
.++|||+|||+.+|+++|+++|+.||+|.+|+|+++.. ..|||||+|+++++|..|+.+.|..|+|+.|.|....+|.
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~~~~~Gr~l~V~~~~~y~ 188 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKDDYF 188 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTTCEETTEECEEEETTTC-
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEhHHHH
Confidence 47999999999999999999999999999999998753 3689999999999999999877789999999999988875
Q ss_pred C
Q 027228 82 P 82 (226)
Q Consensus 82 ~ 82 (226)
.
T Consensus 189 ~ 189 (193)
T 2voo_A 189 A 189 (193)
T ss_dssp -
T ss_pred H
Confidence 4
No 136
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.59 E-value=8.9e-15 Score=115.09 Aligned_cols=77 Identities=21% Similarity=0.320 Sum_probs=70.4
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCC---CCcEEEEEEcChHHHHHHHh-hcCCeecceEEEEeeCCC
Q 027228 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYG---QSKTAFVTFKDAKALEIALL-LSGATIVDQIVSITPAEN 79 (226)
Q Consensus 4 ~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~~---~~~~A~V~F~~~~aa~tAl~-Lng~~l~gr~I~V~~a~~ 79 (226)
.++|||+|||+.+|+++|+++|+.||+|.+|.+.++.. ..++|||+|.++++|..|+. |||..+.|+.|.|..+..
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 47999999999999999999999999999999998762 35899999999999999995 999999999999988764
Q ss_pred C
Q 027228 80 Y 80 (226)
Q Consensus 80 ~ 80 (226)
.
T Consensus 82 ~ 82 (167)
T 1fxl_A 82 S 82 (167)
T ss_dssp C
T ss_pred C
Confidence 3
No 137
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=5.6e-15 Score=112.22 Aligned_cols=75 Identities=15% Similarity=0.219 Sum_probs=66.9
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCC--CCcEEEEEEcChHHHHHHHh-hcCCee--------cceEE
Q 027228 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYG--QSKTAFVTFKDAKALEIALL-LSGATI--------VDQIV 72 (226)
Q Consensus 4 ~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~~--~~~~A~V~F~~~~aa~tAl~-Lng~~l--------~gr~I 72 (226)
.++|||+|||+.+|+++|+++|+.||+|.+|.|..+.. ..+||||+|.++++|..|+. |||..| .+++|
T Consensus 25 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~~~l 104 (114)
T 1x5o_A 25 PTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPL 104 (114)
T ss_dssp TTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCSSCB
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCCCce
Confidence 57999999999999999999999999999999998862 35799999999999999995 999999 56778
Q ss_pred EEeeCC
Q 027228 73 SITPAE 78 (226)
Q Consensus 73 ~V~~a~ 78 (226)
.|..+.
T Consensus 105 ~v~~a~ 110 (114)
T 1x5o_A 105 LCKFSG 110 (114)
T ss_dssp EEEECC
T ss_pred eEEccC
Confidence 877654
No 138
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.58 E-value=3.6e-15 Score=108.96 Aligned_cols=74 Identities=16% Similarity=0.215 Sum_probs=67.5
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCCCCcEEEEEEcChHHHHHHHh-hcCCeecceEEEEeeCCCCC
Q 027228 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIALL-LSGATIVDQIVSITPAENYV 81 (226)
Q Consensus 4 ~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~~~~~~A~V~F~~~~aa~tAl~-Lng~~l~gr~I~V~~a~~~~ 81 (226)
.++|||+|||+.+++++|+++|+.+ +|.++++. ...++|||+|.+++++..|+. |||..|.|+.|.|..++...
T Consensus 5 ~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~---~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~~ 79 (88)
T 1wg1_A 5 SSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD---RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTDA 79 (88)
T ss_dssp CCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE---GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCCCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe---CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCCCc
Confidence 5799999999999999999999999 99999995 346899999999999999995 99999999999999876543
No 139
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.58 E-value=5.3e-15 Score=120.10 Aligned_cols=76 Identities=25% Similarity=0.272 Sum_probs=69.7
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCC---CCcEEEEEEcChHHHHHHH-hhcCCeecceEEEEeeCCC
Q 027228 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYG---QSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPAEN 79 (226)
Q Consensus 4 ~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~~---~~~~A~V~F~~~~aa~tAl-~Lng~~l~gr~I~V~~a~~ 79 (226)
.++|||+|||+.+|+++|+++|+.||+|.+|.|..+.. ..+||||+|.++++|..|| .|||..|.|+.|.|..+..
T Consensus 72 ~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 151 (165)
T 1rk8_A 72 GWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFV 151 (165)
T ss_dssp CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecC
Confidence 46899999999999999999999999999999998852 3589999999999999999 5999999999999987644
No 140
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.58 E-value=2.1e-15 Score=119.53 Aligned_cols=78 Identities=21% Similarity=0.282 Sum_probs=70.9
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecC---CCCcEEEEEEcChHHHHHHH-hhcCCeecceEEEEeeCCC
Q 027228 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREY---GQSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPAEN 79 (226)
Q Consensus 4 ~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~---~~~~~A~V~F~~~~aa~tAl-~Lng~~l~gr~I~V~~a~~ 79 (226)
.++|||+|||+.+|+++|+++|+.||+|.+|.|..+. ...++|||+|.++++|+.|+ .|||..|.|+.|.|..+..
T Consensus 47 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~ 126 (135)
T 2lea_A 47 MTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARY 126 (135)
T ss_dssp CCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 5789999999999999999999999999999998875 24679999999999999999 5999999999999998765
Q ss_pred CC
Q 027228 80 YV 81 (226)
Q Consensus 80 ~~ 81 (226)
..
T Consensus 127 ~~ 128 (135)
T 2lea_A 127 GR 128 (135)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 141
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.58 E-value=7.8e-15 Score=116.03 Aligned_cols=78 Identities=23% Similarity=0.360 Sum_probs=71.2
Q ss_pred CccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCC---CCcEEEEEEcChHHHHHHH-hhcCCeecceEEEEeeCC
Q 027228 3 QTRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYG---QSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPAE 78 (226)
Q Consensus 3 ~~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~~---~~~~A~V~F~~~~aa~tAl-~Lng~~l~gr~I~V~~a~ 78 (226)
..++|||+|||+.+++++|+++|+.||+|.+|.+.++.. ..++|||+|.++++|..|+ .|||..|.|+.|.|..+.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 468999999999999999999999999999999998753 3589999999999999999 599999999999999775
Q ss_pred CC
Q 027228 79 NY 80 (226)
Q Consensus 79 ~~ 80 (226)
..
T Consensus 82 ~~ 83 (168)
T 1b7f_A 82 PG 83 (168)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 142
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.58 E-value=8.1e-16 Score=120.54 Aligned_cols=76 Identities=13% Similarity=0.205 Sum_probs=69.1
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeE--EEEEecCC---CCcEEEEEEcChHHHHHHH-hhcCC----eecceEEE
Q 027228 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIER--IEILREYG---QSKTAFVTFKDAKALEIAL-LLSGA----TIVDQIVS 73 (226)
Q Consensus 4 ~~tV~V~NLs~~tTe~~L~efFs~cG~I~s--I~i~~d~~---~~~~A~V~F~~~~aa~tAl-~Lng~----~l~gr~I~ 73 (226)
.++|||+|||+.+||++|+++|+.||.|.. |+|+++.. ..|||||+|+++ ++..|+ .|||. .|+|+.|.
T Consensus 23 ~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~l~ 101 (131)
T 2m2b_A 23 NDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKTIN 101 (131)
T ss_dssp CCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCCCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEEEE
Confidence 579999999999999999999999999977 99998872 468999999999 999998 69999 99999999
Q ss_pred EeeCCCC
Q 027228 74 ITPAENY 80 (226)
Q Consensus 74 V~~a~~~ 80 (226)
|..+...
T Consensus 102 V~~a~~~ 108 (131)
T 2m2b_A 102 VEFAKGS 108 (131)
T ss_dssp CEECCCS
T ss_pred EEECCCC
Confidence 9987654
No 143
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.57 E-value=7.5e-15 Score=119.12 Aligned_cols=78 Identities=14% Similarity=0.207 Sum_probs=70.7
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCC---CCcEEEEEEcChHHHHHHHhhcCCeecceEEEEeeCCCC
Q 027228 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYG---QSKTAFVTFKDAKALEIALLLSGATIVDQIVSITPAENY 80 (226)
Q Consensus 4 ~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~~---~~~~A~V~F~~~~aa~tAl~Lng~~l~gr~I~V~~a~~~ 80 (226)
.++|||+|||+.+|+++|+++|+.||+|.+|.+..+.. ..|||||+|.++++|..||.++|..|.|+.|.|..+...
T Consensus 13 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~l~v~~~~~~ 92 (196)
T 1l3k_A 13 LRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSR 92 (196)
T ss_dssp GGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETTEECEEEECCC-
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhcCCCEECCEEeeeecccCc
Confidence 58999999999999999999999999999999998863 357999999999999999988999999999999987654
Q ss_pred C
Q 027228 81 V 81 (226)
Q Consensus 81 ~ 81 (226)
.
T Consensus 93 ~ 93 (196)
T 1l3k_A 93 E 93 (196)
T ss_dssp -
T ss_pred c
Confidence 3
No 144
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.57 E-value=7.8e-15 Score=122.93 Aligned_cols=77 Identities=23% Similarity=0.208 Sum_probs=70.4
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCC---CCcEEEEEEcChHHHHHHH-hhcCCeecceEEEEeeCCC
Q 027228 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYG---QSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPAEN 79 (226)
Q Consensus 4 ~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~~---~~~~A~V~F~~~~aa~tAl-~Lng~~l~gr~I~V~~a~~ 79 (226)
.+||||+|||+++||++|+++|+.||+|.+|+|+++.. ..+||||+|.+++++..|+ .|||..+.|+.|.|..+..
T Consensus 15 ~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~~ 94 (213)
T 4f02_A 15 MASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQR 94 (213)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccccc
Confidence 47999999999999999999999999999999999863 3579999999999999999 6999999999999987654
Q ss_pred C
Q 027228 80 Y 80 (226)
Q Consensus 80 ~ 80 (226)
.
T Consensus 95 ~ 95 (213)
T 4f02_A 95 D 95 (213)
T ss_dssp C
T ss_pred c
Confidence 3
No 145
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.57 E-value=4.4e-15 Score=127.76 Aligned_cols=75 Identities=16% Similarity=0.182 Sum_probs=68.8
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCC--ceeEEEEEecCC---CCcEEEEEEcChHHHHHHHh-hcCCeecceEEEEeeC
Q 027228 4 TRTVQVKNVSDLAHEREIHEFFSFSG--DIERIEILREYG---QSKTAFVTFKDAKALEIALL-LSGATIVDQIVSITPA 77 (226)
Q Consensus 4 ~~tV~V~NLs~~tTe~~L~efFs~cG--~I~sI~i~~d~~---~~~~A~V~F~~~~aa~tAl~-Lng~~l~gr~I~V~~a 77 (226)
.++|||+||++.+|+++|+++|+.|| +|.+|+|+.+.. ..+||||+|++.++|..||. |||..|.|+.|.|..+
T Consensus 68 ~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~a 147 (229)
T 3q2s_C 68 RIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPV 147 (229)
T ss_dssp -CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEEC
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEEC
Confidence 46899999999999999999999999 999999999863 35799999999999999995 9999999999999976
Q ss_pred C
Q 027228 78 E 78 (226)
Q Consensus 78 ~ 78 (226)
.
T Consensus 148 ~ 148 (229)
T 3q2s_C 148 N 148 (229)
T ss_dssp C
T ss_pred C
Confidence 4
No 146
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.57 E-value=8.7e-15 Score=108.08 Aligned_cols=71 Identities=28% Similarity=0.367 Sum_probs=62.0
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCCCCcEEEEEEcChHHHHHHHhhcCCee--cceEEEEeeCCC
Q 027228 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIALLLSGATI--VDQIVSITPAEN 79 (226)
Q Consensus 4 ~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~~~~~~A~V~F~~~~aa~tAl~Lng~~l--~gr~I~V~~a~~ 79 (226)
..+|||+|||+++||++|+++|+.||+|.+|+|+.+ ..|||||+|+++++|+. |+|..+ .|+.|.|..+..
T Consensus 11 ~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~--srGfaFV~F~~~~~A~~---~~~~~~~~~g~~v~v~~a~~ 83 (89)
T 3d2w_A 11 GSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP--FRAFAFVTFADDKVAQS---LCGEDLIIKGISVHISNAEP 83 (89)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS--CCSEEEEEESCHHHHHH---HTTCEEEETTEEEEEEECC-
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC--CCCEEEEEECCHHHHHH---HcCCCcccCCEEEEEEEcCC
Confidence 579999999999999999999999999999999875 47899999999999883 566665 499999987754
No 147
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=6.6e-15 Score=111.80 Aligned_cols=77 Identities=22% Similarity=0.307 Sum_probs=67.4
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCce----eEEEEEecCCCCcEEEEEEcChHHHHHHH-hhcCCeecceEEEEeeCC
Q 027228 4 TRTVQVKNVSDLAHEREIHEFFSFSGDI----ERIEILREYGQSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPAE 78 (226)
Q Consensus 4 ~~tV~V~NLs~~tTe~~L~efFs~cG~I----~sI~i~~d~~~~~~A~V~F~~~~aa~tAl-~Lng~~l~gr~I~V~~a~ 78 (226)
.++|||+|||+.+|+++|+++|+.||.| ..+++. .+...+||||+|.++++|..|+ .|||..|.|+.|.|..+.
T Consensus 25 ~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~-~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~ 103 (115)
T 2cpx_A 25 NKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMM-TGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFGK 103 (115)
T ss_dssp CSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEE-CSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcC-CCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEcc
Confidence 4799999999999999999999999999 455555 3345789999999999999999 599999999999999876
Q ss_pred CCC
Q 027228 79 NYV 81 (226)
Q Consensus 79 ~~~ 81 (226)
...
T Consensus 104 ~~~ 106 (115)
T 2cpx_A 104 NKK 106 (115)
T ss_dssp CCS
T ss_pred CCC
Confidence 543
No 148
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.56 E-value=6.1e-15 Score=116.59 Aligned_cols=77 Identities=21% Similarity=0.289 Sum_probs=68.4
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeE--------EEEEecCCCCcEEEEEEcChHHHHHHHh-hcCCeecceEEEE
Q 027228 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIER--------IEILREYGQSKTAFVTFKDAKALEIALL-LSGATIVDQIVSI 74 (226)
Q Consensus 4 ~~tV~V~NLs~~tTe~~L~efFs~cG~I~s--------I~i~~d~~~~~~A~V~F~~~~aa~tAl~-Lng~~l~gr~I~V 74 (226)
.++|||+|||+.+|+++|+++|+.||.|.+ |.+...+...+||||+|.++++|..|+. |||..|.|+.|.|
T Consensus 45 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~V 124 (143)
T 3egn_A 45 NCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMVV 124 (143)
T ss_dssp CSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEECEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 579999999999999999999999999987 5555555567899999999999999995 9999999999999
Q ss_pred eeCCCC
Q 027228 75 TPAENY 80 (226)
Q Consensus 75 ~~a~~~ 80 (226)
..+...
T Consensus 125 ~~a~~~ 130 (143)
T 3egn_A 125 QFARSA 130 (143)
T ss_dssp EECCCS
T ss_pred EECCCC
Confidence 987554
No 149
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=7.2e-15 Score=107.85 Aligned_cols=73 Identities=19% Similarity=0.256 Sum_probs=66.1
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCc-eeEEEEEecCCCCcEEEEEEcChHHHHHHH-hhcC-CeecceEEEEeeCCCC
Q 027228 4 TRTVQVKNVSDLAHEREIHEFFSFSGD-IERIEILREYGQSKTAFVTFKDAKALEIAL-LLSG-ATIVDQIVSITPAENY 80 (226)
Q Consensus 4 ~~tV~V~NLs~~tTe~~L~efFs~cG~-I~sI~i~~d~~~~~~A~V~F~~~~aa~tAl-~Lng-~~l~gr~I~V~~a~~~ 80 (226)
.++|||+|||+.+|+++|+++|+.||+ |..+.+. ..+||||+|.++++|..|+ .||| ..|+|+.|.|..+...
T Consensus 8 ~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 83 (93)
T 2cqh_A 8 MNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL----KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSVSK 83 (93)
T ss_dssp CCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE----ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECCCC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc----CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEccCc
Confidence 579999999999999999999999999 7777774 2579999999999999999 5999 9999999999987654
No 150
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.56 E-value=3.5e-15 Score=116.43 Aligned_cols=76 Identities=13% Similarity=0.198 Sum_probs=67.2
Q ss_pred ccEEEEeCCCCc-ccHHHHHHHcccCCceeEEEEEecCCCCcEEEEEEcChHHHHHHHh-hc--CCeecceEEEEeeCCC
Q 027228 4 TRTVQVKNVSDL-AHEREIHEFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIALL-LS--GATIVDQIVSITPAEN 79 (226)
Q Consensus 4 ~~tV~V~NLs~~-tTe~~L~efFs~cG~I~sI~i~~d~~~~~~A~V~F~~~~aa~tAl~-Ln--g~~l~gr~I~V~~a~~ 79 (226)
+++|||+|||+. +|+++|+++|+.||+|.+|.|.+. .+||||+|+++++|..|+. || +..|.||.|.|..+..
T Consensus 25 ~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~---kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~ 101 (112)
T 1x4f_A 25 GRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRM---KSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLSEK 101 (112)
T ss_dssp CCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETT---TTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEECS
T ss_pred CCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecC---CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEECcc
Confidence 579999999998 999999999999999999999854 6799999999999999994 65 5679999999998765
Q ss_pred CCC
Q 027228 80 YVP 82 (226)
Q Consensus 80 ~~~ 82 (226)
...
T Consensus 102 ~~~ 104 (112)
T 1x4f_A 102 YKK 104 (112)
T ss_dssp CSS
T ss_pred ccc
Confidence 443
No 151
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.56 E-value=9.8e-15 Score=122.33 Aligned_cols=76 Identities=20% Similarity=0.305 Sum_probs=70.3
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCC-CCcEEEEEEcChHHHHHHH-hhcCCeecceEEEEeeCCC
Q 027228 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYG-QSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPAEN 79 (226)
Q Consensus 4 ~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~~-~~~~A~V~F~~~~aa~tAl-~Lng~~l~gr~I~V~~a~~ 79 (226)
.++|||+|||+.+|+++|+++|+.||.|.+++|+.+.+ ..+||||+|.++++|..|+ .|||..|+|+.|.|..+..
T Consensus 103 ~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~ 180 (213)
T 4f02_A 103 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 180 (213)
T ss_dssp TTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcCC
Confidence 46899999999999999999999999999999998864 4689999999999999999 5999999999999998754
No 152
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.55 E-value=2.2e-14 Score=112.69 Aligned_cols=75 Identities=13% Similarity=0.139 Sum_probs=69.0
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCC---CCcEEEEEEcChHHHHHHHh-hcCCeecceEEEEeeCC
Q 027228 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYG---QSKTAFVTFKDAKALEIALL-LSGATIVDQIVSITPAE 78 (226)
Q Consensus 4 ~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~~---~~~~A~V~F~~~~aa~tAl~-Lng~~l~gr~I~V~~a~ 78 (226)
.++|+|+|||+.+|+++|+++|+.||.|.++.+..+.. ..++|||+|.++++|..|+. |||..|+|+.|.|..+.
T Consensus 87 ~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 165 (166)
T 3md3_A 87 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAA 165 (166)
T ss_dssp CEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESC
T ss_pred CceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEecC
Confidence 57899999999999999999999999999999998852 35799999999999999995 99999999999998763
No 153
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.55 E-value=2e-14 Score=116.65 Aligned_cols=79 Identities=23% Similarity=0.376 Sum_probs=69.8
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCC---CCcEEEEEEcChHHHHHHHhhcCCeecceEEEEeeCCCC
Q 027228 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYG---QSKTAFVTFKDAKALEIALLLSGATIVDQIVSITPAENY 80 (226)
Q Consensus 4 ~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~~---~~~~A~V~F~~~~aa~tAl~Lng~~l~gr~I~V~~a~~~ 80 (226)
.++|||+|||+.+|+++|+++|+.||.|.+|.+..+.. ..++|||+|.++++|..|+.++|..|+|+.|.|..+..-
T Consensus 104 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~~~~~~~G~~i~v~~a~~k 183 (196)
T 1l3k_A 104 VKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSK 183 (196)
T ss_dssp CSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHCSCCEETTEECEEEECC--
T ss_pred cceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHhCCcEECCEEEEEEecCCh
Confidence 47999999999999999999999999999999998852 368999999999999999988999999999999987654
Q ss_pred CC
Q 027228 81 VP 82 (226)
Q Consensus 81 ~~ 82 (226)
..
T Consensus 184 ~~ 185 (196)
T 1l3k_A 184 QE 185 (196)
T ss_dssp --
T ss_pred hH
Confidence 33
No 154
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.54 E-value=7.5e-15 Score=116.27 Aligned_cols=76 Identities=24% Similarity=0.281 Sum_probs=70.1
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecC---CCCcEEEEEEcChHHHHHHHhhcCCeecceEEEEeeCCC
Q 027228 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREY---GQSKTAFVTFKDAKALEIALLLSGATIVDQIVSITPAEN 79 (226)
Q Consensus 4 ~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~---~~~~~A~V~F~~~~aa~tAl~Lng~~l~gr~I~V~~a~~ 79 (226)
.++|||+|||+.+|+++|+++|+.||+|.++.+..+. ...|+|||+|.++++|..|+.|||..|+|+.|.|..+.+
T Consensus 87 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~V~~a~p 165 (167)
T 2cjk_A 87 TGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQNKFIDFKDRKIEIKRAEP 165 (167)
T ss_dssp CEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHHCSEECSSSSCEEEEECCC
T ss_pred CCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHhCCCEEeCCeEEEEeecCC
Confidence 4689999999999999999999999999999999875 246899999999999999999999999999999998754
No 155
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=1e-14 Score=106.11 Aligned_cols=75 Identities=29% Similarity=0.260 Sum_probs=63.4
Q ss_pred CccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCCCCcEEEEEEcChHHHHHHHhhcCCeecceEEEEeeCCCC
Q 027228 3 QTRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIALLLSGATIVDQIVSITPAENY 80 (226)
Q Consensus 3 ~~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~~~~~~A~V~F~~~~aa~tAl~Lng~~l~gr~I~V~~a~~~ 80 (226)
..++|||+|||+.+|+++|+++|+.||+|.+|.|..+ ..+||||+|+++++|+.|+.. +..+.|+.|.|..+...
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~--~~g~afV~f~~~~~a~~~~~~-~~~~~g~~l~v~~a~~~ 78 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP--FRAFAFVTFADDQIAQSLCGE-DLIIKGISVHISNAEPK 78 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS--CCSCCEEECSCHHHHHHTTTC-EEEETTEEEEEECCCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC--CCCEEEEEECCHHHHHHHhcC-CceeCCEEEEEEecCCC
Confidence 4689999999999999999999999999999999865 478999999999999754322 34458999999877543
No 156
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.54 E-value=1.1e-14 Score=108.30 Aligned_cols=74 Identities=23% Similarity=0.258 Sum_probs=64.4
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecC---CCCcEEEEEEcChHHHHHHHh-hcCCeecceEEEEeeCCC
Q 027228 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREY---GQSKTAFVTFKDAKALEIALL-LSGATIVDQIVSITPAEN 79 (226)
Q Consensus 4 ~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~---~~~~~A~V~F~~~~aa~tAl~-Lng~~l~gr~I~V~~a~~ 79 (226)
.++|||+|||+.+|+++|+++|+.++ .|.++.+. ...+||||+|+++++|..|+. |||..|.|+.|.|..+..
T Consensus 15 ~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 91 (102)
T 2fc8_A 15 SKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKP 91 (102)
T ss_dssp CSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecC
Confidence 57999999999999999999999774 56666654 235799999999999999995 999999999999998765
Q ss_pred C
Q 027228 80 Y 80 (226)
Q Consensus 80 ~ 80 (226)
.
T Consensus 92 ~ 92 (102)
T 2fc8_A 92 K 92 (102)
T ss_dssp C
T ss_pred C
Confidence 4
No 157
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.54 E-value=1.4e-14 Score=114.95 Aligned_cols=78 Identities=24% Similarity=0.375 Sum_probs=69.0
Q ss_pred CCccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCC-----CCcEEEEEEcChHHHHHHH-hhcCCeec---ceEE
Q 027228 2 QQTRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYG-----QSKTAFVTFKDAKALEIAL-LLSGATIV---DQIV 72 (226)
Q Consensus 2 s~~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~~-----~~~~A~V~F~~~~aa~tAl-~Lng~~l~---gr~I 72 (226)
++.++|||+|||+.+|+++|+++|+.||+|.+|.+.++.. ..++|||+|.++++|..|+ .|||..+. ++.+
T Consensus 1 s~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~ 80 (175)
T 3nmr_A 1 SDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPI 80 (175)
T ss_dssp CCCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccce
Confidence 4678999999999999999999999999999999998863 3579999999999999999 59998876 6778
Q ss_pred EEeeCCC
Q 027228 73 SITPAEN 79 (226)
Q Consensus 73 ~V~~a~~ 79 (226)
.+.++..
T Consensus 81 ~~~~~~~ 87 (175)
T 3nmr_A 81 QMKPADS 87 (175)
T ss_dssp EEEECGG
T ss_pred EEccccc
Confidence 8876543
No 158
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.54 E-value=1.7e-14 Score=114.78 Aligned_cols=74 Identities=14% Similarity=0.341 Sum_probs=68.5
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCC---CCcEEEEEEcChHHHHHHHh-hcCCeecceEEEEeeC
Q 027228 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYG---QSKTAFVTFKDAKALEIALL-LSGATIVDQIVSITPA 77 (226)
Q Consensus 4 ~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~~---~~~~A~V~F~~~~aa~tAl~-Lng~~l~gr~I~V~~a 77 (226)
.++|+|+|||+.+|+++|+++|+.||+|.++.+..+.. ..++|||+|.++++|..|+. |||..|+|+.|.|..+
T Consensus 94 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 94 AHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp TTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 47899999999999999999999999999999998852 36799999999999999995 9999999999999875
No 159
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=8.1e-15 Score=112.24 Aligned_cols=70 Identities=16% Similarity=0.164 Sum_probs=57.2
Q ss_pred CccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecC------CCCcEEEEEEcChHHHHHHH-hhcCCeecceEEEEe
Q 027228 3 QTRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREY------GQSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSIT 75 (226)
Q Consensus 3 ~~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~------~~~~~A~V~F~~~~aa~tAl-~Lng~~l~gr~I~V~ 75 (226)
+.++|||+|||+.+|+++|+++|+.||+|. +.++.+. ...+||||+|+++++|..|+ .|+ .++|+.|.+.
T Consensus 7 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~~ 83 (114)
T 2dnl_A 7 GSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLCV 83 (114)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEEE
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEec
Confidence 468999999999999999999999999999 7777664 23689999999999999999 462 2444444444
No 160
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=4.1e-14 Score=104.87 Aligned_cols=73 Identities=19% Similarity=0.216 Sum_probs=65.9
Q ss_pred CccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCCCCcEEEEEEcChHHHHHHH-hhcCCeecceEEEEeeCCCC
Q 027228 3 QTRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPAENY 80 (226)
Q Consensus 3 ~~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~~~~~~A~V~F~~~~aa~tAl-~Lng~~l~gr~I~V~~a~~~ 80 (226)
..++|||+|+ .+|+++|+++|+.||+|.+|.|. ...++|||+|.++++|..|+ .|||..|.|+.|.|..+...
T Consensus 14 ~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~---~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~ 87 (97)
T 1x5p_A 14 KGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD---PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQ 87 (97)
T ss_dssp CCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE---TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSSC
T ss_pred CCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec---CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCC
Confidence 3579999995 89999999999999999999995 34679999999999999999 79999999999999987554
No 161
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.54 E-value=2.1e-14 Score=121.20 Aligned_cols=75 Identities=15% Similarity=0.339 Sum_probs=69.2
Q ss_pred CccEEEEeCCC-CcccHHHHHHHcccCCceeEEEEEecCCCCcEEEEEEcChHHHHHHH-hhcCCeecceEEEEeeCCC
Q 027228 3 QTRTVQVKNVS-DLAHEREIHEFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPAEN 79 (226)
Q Consensus 3 ~~~tV~V~NLs-~~tTe~~L~efFs~cG~I~sI~i~~d~~~~~~A~V~F~~~~aa~tAl-~Lng~~l~gr~I~V~~a~~ 79 (226)
.+++|||+||| +.+|+++|+++|+.||+|.+|+++++ +.++|||+|+++++|..|+ .|||..|.|+.|.|..+..
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~--~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~ 79 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS--KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQ 79 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT--STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC--CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccC
Confidence 56899999999 79999999999999999999999875 3689999999999999999 5999999999999997643
No 162
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.53 E-value=2.1e-14 Score=118.20 Aligned_cols=77 Identities=19% Similarity=0.246 Sum_probs=68.8
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecC---CCCcEEEEEEcChHHHHHHHh-hcCCeecceEEEEeeCCC
Q 027228 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREY---GQSKTAFVTFKDAKALEIALL-LSGATIVDQIVSITPAEN 79 (226)
Q Consensus 4 ~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~---~~~~~A~V~F~~~~aa~tAl~-Lng~~l~gr~I~V~~a~~ 79 (226)
.++|||+|||+.+|+++|+++|+.||+|.+|.|..+. ...++|||+|.++++|..|+. |||..|.|+.|.|..+..
T Consensus 28 ~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~~ 107 (216)
T 2qfj_A 28 MSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSN 107 (216)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCSC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCCC
Confidence 4799999999999999999999999999999998875 247899999999999999996 999999999999987654
Q ss_pred C
Q 027228 80 Y 80 (226)
Q Consensus 80 ~ 80 (226)
.
T Consensus 108 ~ 108 (216)
T 2qfj_A 108 I 108 (216)
T ss_dssp C
T ss_pred c
Confidence 4
No 163
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.29 E-value=6.7e-16 Score=118.11 Aligned_cols=79 Identities=16% Similarity=0.276 Sum_probs=70.9
Q ss_pred CccEEEEeCCCCcccHHHHHHHcccCCceeE--------EEEEecC---CCCcEEEEEEcChHHHHHHHh-hcCCeecce
Q 027228 3 QTRTVQVKNVSDLAHEREIHEFFSFSGDIER--------IEILREY---GQSKTAFVTFKDAKALEIALL-LSGATIVDQ 70 (226)
Q Consensus 3 ~~~tV~V~NLs~~tTe~~L~efFs~cG~I~s--------I~i~~d~---~~~~~A~V~F~~~~aa~tAl~-Lng~~l~gr 70 (226)
..++|||+|||+.+++++|+++|+.||.|.+ |.|..+. ...+||||+|.++++|..|+. |||..|.|+
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~ 85 (116)
T 2lcw_A 6 DNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGN 85 (116)
Confidence 4689999999999999999999999999999 8898774 246899999999999999995 999999999
Q ss_pred EEEEeeCCCCC
Q 027228 71 IVSITPAENYV 81 (226)
Q Consensus 71 ~I~V~~a~~~~ 81 (226)
.|.|..+....
T Consensus 86 ~l~V~~a~~~~ 96 (116)
T 2lcw_A 86 PIKVSFATRRA 96 (116)
Confidence 99999875543
No 164
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.53 E-value=3.1e-14 Score=115.68 Aligned_cols=79 Identities=22% Similarity=0.363 Sum_probs=67.9
Q ss_pred CCCccEEEEeCCCCcccHHHHHHHcccC----C-------ceeEEEEEecCCCCcEEEEEEcChHHHHHHHhhcCCeecc
Q 027228 1 MQQTRTVQVKNVSDLAHEREIHEFFSFS----G-------DIERIEILREYGQSKTAFVTFKDAKALEIALLLSGATIVD 69 (226)
Q Consensus 1 Ms~~~tV~V~NLs~~tTe~~L~efFs~c----G-------~I~sI~i~~d~~~~~~A~V~F~~~~aa~tAl~Lng~~l~g 69 (226)
|.+.++|||+|||+.+|+++|+++|+.| | .|.++.+.. ..++|||+|.++++|..|+.|||..|.|
T Consensus 1 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~~---~~g~afV~F~~~~~A~~Al~l~g~~~~g 77 (198)
T 2yh0_A 1 GAMARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ---DKNFAFLEFRSVDETTQAMAFDGIIFQG 77 (198)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEET---TTTEEEEEESCSHHHHHHGGGTTEEETT
T ss_pred CCceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEecC---CCCEEEEEeCCHHHHHHHHHhcCCEEcC
Confidence 4578999999999999999999999999 5 666666643 3689999999999999999999999999
Q ss_pred eEEEEeeCCCCCC
Q 027228 70 QIVSITPAENYVP 82 (226)
Q Consensus 70 r~I~V~~a~~~~~ 82 (226)
+.|.|..+..+..
T Consensus 78 ~~i~v~~~~~~~~ 90 (198)
T 2yh0_A 78 QSLKIRRPHDYQP 90 (198)
T ss_dssp EEEEEECCCCCCC
T ss_pred ceEEEeCCCCCCC
Confidence 9999998876654
No 165
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.52 E-value=2.1e-14 Score=119.03 Aligned_cols=76 Identities=17% Similarity=0.180 Sum_probs=70.0
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecC--CCCcEEEEEEcChHHHHHHHh-hcCCeecceEEEEeeCCC
Q 027228 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREY--GQSKTAFVTFKDAKALEIALL-LSGATIVDQIVSITPAEN 79 (226)
Q Consensus 4 ~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~--~~~~~A~V~F~~~~aa~tAl~-Lng~~l~gr~I~V~~a~~ 79 (226)
.++|||+|||+.+++++|++||+.||+|.+|.|..+. ...+||||+|+++++|..|+. |||..|+|+.|.|..+..
T Consensus 88 ~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a~~ 166 (177)
T 2f3j_A 88 GAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVAS 166 (177)
T ss_dssp CEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEESS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEecC
Confidence 5799999999999999999999999999999999875 246899999999999999995 999999999999987754
No 166
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.52 E-value=5.4e-14 Score=115.68 Aligned_cols=77 Identities=16% Similarity=0.210 Sum_probs=70.6
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCC---CCcEEEEEEcChHHHHHHHh-hcCCeecceEEEEeeCCC
Q 027228 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYG---QSKTAFVTFKDAKALEIALL-LSGATIVDQIVSITPAEN 79 (226)
Q Consensus 4 ~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~~---~~~~A~V~F~~~~aa~tAl~-Lng~~l~gr~I~V~~a~~ 79 (226)
.++|||+|||+.+|+++|+++|+.||+|.+|.+..+.. ..++|||+|.+.++|..|+. |||..|+|+.|.|..+..
T Consensus 125 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a~~ 204 (216)
T 2qfj_A 125 FNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVT 204 (216)
T ss_dssp SCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEECSS
T ss_pred CcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEecC
Confidence 47999999999999999999999999999999998852 36799999999999999995 999999999999998755
Q ss_pred C
Q 027228 80 Y 80 (226)
Q Consensus 80 ~ 80 (226)
-
T Consensus 205 ~ 205 (216)
T 2qfj_A 205 P 205 (216)
T ss_dssp C
T ss_pred C
Confidence 4
No 167
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.52 E-value=3.8e-14 Score=122.86 Aligned_cols=77 Identities=14% Similarity=0.217 Sum_probs=71.0
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecC-CCCcEEEEEEcChHHHHHHHhhcCCeecceEEEEeeCCCC
Q 027228 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREY-GQSKTAFVTFKDAKALEIALLLSGATIVDQIVSITPAENY 80 (226)
Q Consensus 4 ~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~-~~~~~A~V~F~~~~aa~tAl~Lng~~l~gr~I~V~~a~~~ 80 (226)
.++|||+|||+.+|+++|++||+.||+|.+|.|.++. +..++|||+|.++++|..|+.|||..|.|+.|.|.++...
T Consensus 41 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~i~v~~~~~~ 118 (292)
T 2ghp_A 41 LTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAITKTHKVVGQNEIIVSHLTEC 118 (292)
T ss_dssp -CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTSSSEEEEEEESSHHHHHHHHTTTTCEETTEECEEEECCSC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEEECCHHHHHHHHHhCCcEeCCcEEEEEECCCC
Confidence 5899999999999999999999999999999999976 3478999999999999999999999999999999987543
No 168
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.51 E-value=2.9e-14 Score=112.84 Aligned_cols=75 Identities=11% Similarity=0.264 Sum_probs=67.5
Q ss_pred CccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecC---CCCcEEEEEEcChHHHHHHHhhcCCeecceEEEEeeCC
Q 027228 3 QTRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREY---GQSKTAFVTFKDAKALEIALLLSGATIVDQIVSITPAE 78 (226)
Q Consensus 3 ~~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~---~~~~~A~V~F~~~~aa~tAl~Lng~~l~gr~I~V~~a~ 78 (226)
+.++|||+|||+.+|+++|+++|+.||+|.+|.+.++. ...|+|||+|.++++|..|+. ++..|+|+.|.|..+.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVK-TQHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHH-SCCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHh-cccccCCeEccccccc
Confidence 36899999999999999999999999999999999875 246899999999999999997 4788999999988764
No 169
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.50 E-value=7.5e-14 Score=110.98 Aligned_cols=77 Identities=22% Similarity=0.401 Sum_probs=69.1
Q ss_pred CccEEEEeCCCCcccHHHHHHHcccC----C-------ceeEEEEEecCCCCcEEEEEEcChHHHHHHHhhcCCeecceE
Q 027228 3 QTRTVQVKNVSDLAHEREIHEFFSFS----G-------DIERIEILREYGQSKTAFVTFKDAKALEIALLLSGATIVDQI 71 (226)
Q Consensus 3 ~~~tV~V~NLs~~tTe~~L~efFs~c----G-------~I~sI~i~~d~~~~~~A~V~F~~~~aa~tAl~Lng~~l~gr~ 71 (226)
+.++|||+|||+.+|+++|+++|+.| | .|.++.+.++ .++|||+|.++++|..|+.|||..|.|+.
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~~---~g~afV~f~~~~~A~~A~~~~~~~~~g~~ 79 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD---KNFAFLEFRSVDETTQAMAFDGIIFQGQS 79 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEETT---TTEEEEEESSHHHHHHHGGGTTCEETTEE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecCC---CCEEEEEeCCHHHHHHHHHhCCcEecCce
Confidence 46899999999999999999999999 6 7888877644 68999999999999999999999999999
Q ss_pred EEEeeCCCCCC
Q 027228 72 VSITPAENYVP 82 (226)
Q Consensus 72 I~V~~a~~~~~ 82 (226)
|.|..+..+..
T Consensus 80 i~v~~~~~~~~ 90 (172)
T 2g4b_A 80 LKIRRPHDYQP 90 (172)
T ss_dssp CEEECCSSCCC
T ss_pred eeecCCcccCC
Confidence 99998766544
No 170
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.50 E-value=2.3e-14 Score=117.40 Aligned_cols=76 Identities=21% Similarity=0.380 Sum_probs=70.0
Q ss_pred CccEEEEeCCCC-cccHHHHHHHcccCCceeEEEEEecCCCCcEEEEEEcChHHHHHHHh-hcCCeecceEEEEeeCCCC
Q 027228 3 QTRTVQVKNVSD-LAHEREIHEFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIALL-LSGATIVDQIVSITPAENY 80 (226)
Q Consensus 3 ~~~tV~V~NLs~-~tTe~~L~efFs~cG~I~sI~i~~d~~~~~~A~V~F~~~~aa~tAl~-Lng~~l~gr~I~V~~a~~~ 80 (226)
++++|||+|||+ .+++++|+++|+.||+|.+|.+..+. .++|||+|.++++|..|+. |||..|.|+.|.|..+...
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~--~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~ 79 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK--KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQ 79 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC--SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCCC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC--CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecCC
Confidence 358999999999 99999999999999999999998875 6799999999999999995 9999999999999877543
No 171
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.50 E-value=6.2e-14 Score=111.25 Aligned_cols=74 Identities=27% Similarity=0.346 Sum_probs=67.3
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCC--CCcEEEEEEcChHHHHHHH-hhcCCeecc---eEEEEeeC
Q 027228 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYG--QSKTAFVTFKDAKALEIAL-LLSGATIVD---QIVSITPA 77 (226)
Q Consensus 4 ~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~~--~~~~A~V~F~~~~aa~tAl-~Lng~~l~g---r~I~V~~a 77 (226)
.++|||+|||+.+|+++|+++|+.||.|.++.+.++.. ..++|||+|.++++|..|+ .|||..+.+ ++|.|..+
T Consensus 95 ~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~~a 174 (175)
T 3nmr_A 95 DRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFA 174 (175)
T ss_dssp GSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEEEC
T ss_pred CCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEEec
Confidence 57999999999999999999999999999999998863 3679999999999999999 799988774 99999865
No 172
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.50 E-value=6.9e-14 Score=113.59 Aligned_cols=76 Identities=13% Similarity=0.323 Sum_probs=70.0
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCC---CCcEEEEEEcChHHHHHHHh-hcCCeecceEEEEeeCCC
Q 027228 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYG---QSKTAFVTFKDAKALEIALL-LSGATIVDQIVSITPAEN 79 (226)
Q Consensus 4 ~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~~---~~~~A~V~F~~~~aa~tAl~-Lng~~l~gr~I~V~~a~~ 79 (226)
.++|||+|||+.+++++|+++|+.||.|.+|.+..+.. ..++|||+|.++++|..|+. |||..|+|+.|.|..+..
T Consensus 114 ~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 193 (198)
T 2yh0_A 114 AHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASV 193 (198)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEESCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 58999999999999999999999999999999998852 36899999999999999995 999999999999998754
No 173
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=2.6e-14 Score=111.97 Aligned_cols=74 Identities=11% Similarity=0.203 Sum_probs=66.6
Q ss_pred ccEEEE--eCCCCcccHHHHHHHcccCCceeEEEEEecCCCCcEEEEEEcChHHHHHHH-hhcCCee-----cceEEEEe
Q 027228 4 TRTVQV--KNVSDLAHEREIHEFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIAL-LLSGATI-----VDQIVSIT 75 (226)
Q Consensus 4 ~~tV~V--~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~~~~~~A~V~F~~~~aa~tAl-~Lng~~l-----~gr~I~V~ 75 (226)
+++||| +||++.+|+++|+++|+.||+|.+|.|..+ .+||||+|+++++|+.|+ .|||.+| .|++|.|.
T Consensus 25 t~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~---rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~v~ 101 (114)
T 2cq2_A 25 TQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN---KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLN 101 (114)
T ss_dssp CSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT---CSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEE
T ss_pred CCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC---CCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEEEE
Confidence 578999 779999999999999999999999998753 579999999999999999 5999999 78999998
Q ss_pred eCCCC
Q 027228 76 PAENY 80 (226)
Q Consensus 76 ~a~~~ 80 (226)
.+.+.
T Consensus 102 ~a~~~ 106 (114)
T 2cq2_A 102 FVEKV 106 (114)
T ss_dssp EESCC
T ss_pred ecccC
Confidence 77654
No 174
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.49 E-value=8.5e-14 Score=120.05 Aligned_cols=77 Identities=26% Similarity=0.355 Sum_probs=70.8
Q ss_pred ccEEEEeCCCCcccHHHHH----HHcccCCceeEEEEEecCCCCcEEEEEEcChHHHHHHH-hhcCCeecceEEEEeeCC
Q 027228 4 TRTVQVKNVSDLAHEREIH----EFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPAE 78 (226)
Q Consensus 4 ~~tV~V~NLs~~tTe~~L~----efFs~cG~I~sI~i~~d~~~~~~A~V~F~~~~aa~tAl-~Lng~~l~gr~I~V~~a~ 78 (226)
.++|||+|||+.+|+++|+ ++|+.||+|.+|.+.+.+...+||||+|.+.++|..|+ .|||..|.|+.|.|..+.
T Consensus 9 ~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 88 (282)
T 3pgw_A 9 NHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYAK 88 (282)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEEec
Confidence 6899999999999999977 99999999999999986666789999999999999999 799999999999998775
Q ss_pred CC
Q 027228 79 NY 80 (226)
Q Consensus 79 ~~ 80 (226)
..
T Consensus 89 ~~ 90 (282)
T 3pgw_A 89 TD 90 (282)
T ss_pred cC
Confidence 43
No 175
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.49 E-value=1.5e-13 Score=110.06 Aligned_cols=74 Identities=19% Similarity=0.214 Sum_probs=66.8
Q ss_pred cEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCCCCcE-EEEEEcChHHHHHHH-hhcCCeecc--eEEEEeeCCCC
Q 027228 5 RTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYGQSKT-AFVTFKDAKALEIAL-LLSGATIVD--QIVSITPAENY 80 (226)
Q Consensus 5 ~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~~~~~~-A~V~F~~~~aa~tAl-~Lng~~l~g--r~I~V~~a~~~ 80 (226)
..|||+||++.+|+++|+++|+.+|+|.+|.|..+. .+| |||+|+++++|..|+ .|||..|.| +.|+|.-+...
T Consensus 29 L~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~--~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~~ 106 (130)
T 3zzy_A 29 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN--NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLT 106 (130)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEET--TEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECSCS
T ss_pred EEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCC--CCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecCCC
Confidence 468999999999999999999999999999998754 567 999999999999999 699999988 89999877543
No 176
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.49 E-value=1.5e-13 Score=108.92 Aligned_cols=73 Identities=21% Similarity=0.202 Sum_probs=65.0
Q ss_pred cEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCCCCcE-EEEEEcChHHHHHHH-hhcCCeecc--eEEEEeeCCCC
Q 027228 5 RTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYGQSKT-AFVTFKDAKALEIAL-LLSGATIVD--QIVSITPAENY 80 (226)
Q Consensus 5 ~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~~~~~~-A~V~F~~~~aa~tAl-~Lng~~l~g--r~I~V~~a~~~ 80 (226)
..|||+||++.+|+++|+++|+.||+|.+|.|... .|| |||+|+++++|..|+ .|||..|.| +.|+|..+..-
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~---~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~~ 102 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR---NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPT 102 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES---SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCSCS
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC---CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEecCC
Confidence 35789999999999999999999999999999763 376 999999999999999 599999988 68999876543
No 177
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.49 E-value=5.5e-14 Score=113.31 Aligned_cols=74 Identities=15% Similarity=0.199 Sum_probs=64.6
Q ss_pred ccEEEEeCC----CCcccHHHHHHHcccCCceeEEEEEecCCC---CcEEEEEEcC----h-HH---HHHHHh---hcCC
Q 027228 4 TRTVQVKNV----SDLAHEREIHEFFSFSGDIERIEILREYGQ---SKTAFVTFKD----A-KA---LEIALL---LSGA 65 (226)
Q Consensus 4 ~~tV~V~NL----s~~tTe~~L~efFs~cG~I~sI~i~~d~~~---~~~A~V~F~~----~-~a---a~tAl~---Lng~ 65 (226)
...|+|+|| |+.++|.+|++||+.+|+|.++.++.|+.+ .|||||+|.| + ++ |.+|+. |||.
T Consensus 2 p~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~ 81 (136)
T 2j8a_A 2 SCEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGC 81 (136)
T ss_dssp CCEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCE
T ss_pred CcEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCC
Confidence 469999999 999999999999999999999999999954 6899999996 3 32 778865 8999
Q ss_pred eecceEEEEeeC
Q 027228 66 TIVDQIVSITPA 77 (226)
Q Consensus 66 ~l~gr~I~V~~a 77 (226)
.|+||.|+|...
T Consensus 82 ~I~Gr~irV~ln 93 (136)
T 2j8a_A 82 FIMGFKFEVILN 93 (136)
T ss_dssp EETTEEEEEEEC
T ss_pred eecCcEEEEEEC
Confidence 999999999853
No 178
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.49 E-value=6.7e-14 Score=116.15 Aligned_cols=75 Identities=19% Similarity=0.200 Sum_probs=67.1
Q ss_pred cEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCCCCcEEEEEEcChHHHHHHH-hhcCCeecc--eEEEEeeCCCC
Q 027228 5 RTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIAL-LLSGATIVD--QIVSITPAENY 80 (226)
Q Consensus 5 ~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~~~~~~A~V~F~~~~aa~tAl-~Lng~~l~g--r~I~V~~a~~~ 80 (226)
.+|||+||++.+|+++|+++|+.||+|++|.|..+. ..+||||+|++.++|+.|+ .|||..|.| +.|+|..+...
T Consensus 47 l~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~-~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~~ 124 (164)
T 1sjr_A 47 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN-NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLT 124 (164)
T ss_dssp EEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS-SCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECSSS
T ss_pred EEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC-CCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEecCC
Confidence 468999999999999999999999999999997553 4679999999999999999 599999965 99999977543
No 179
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.49 E-value=7.9e-14 Score=111.60 Aligned_cols=74 Identities=27% Similarity=0.277 Sum_probs=65.9
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCCCCcEEEEEEcChHHHHHHHh-hcCCeecceEEEEeeCCC
Q 027228 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIALL-LSGATIVDQIVSITPAEN 79 (226)
Q Consensus 4 ~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~~~~~~A~V~F~~~~aa~tAl~-Lng~~l~gr~I~V~~a~~ 79 (226)
.++|||+|||+.+|+++|+++|+.||+|..+ ...+...++|||+|.++++|..|+. |||..|+|+.|.|..+.+
T Consensus 99 ~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~--~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~ 173 (175)
T 1fje_B 99 ARTLLAKNLSFNITEDELKEVFEDALEIRLV--SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGE 173 (175)
T ss_dssp GGEEEEESCCSSCCHHHHHHHCTTCSEEEEE--CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECSS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe--cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecCC
Confidence 4799999999999999999999999999887 2223457899999999999999995 999999999999987753
No 180
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.48 E-value=9.9e-14 Score=109.64 Aligned_cols=74 Identities=22% Similarity=0.283 Sum_probs=67.4
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCC---CCcEEEEEEcChHHHHHHHh-hcCCeecc--eEEEEeeC
Q 027228 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYG---QSKTAFVTFKDAKALEIALL-LSGATIVD--QIVSITPA 77 (226)
Q Consensus 4 ~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~~---~~~~A~V~F~~~~aa~tAl~-Lng~~l~g--r~I~V~~a 77 (226)
.++|+|+|||+.+++++|+++|+.||+|.++.+.++.. ..++|||+|.++++|..|+. |||..|.| ++|.|..+
T Consensus 89 ~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 89 DTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp TCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred CCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEEeC
Confidence 57999999999999999999999999999999998762 35799999999999999995 99999988 99999753
No 181
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.48 E-value=6.3e-14 Score=118.60 Aligned_cols=75 Identities=21% Similarity=0.391 Sum_probs=69.8
Q ss_pred ccEEEEeCCCC-cccHHHHHHHcccCCceeEEEEEecCCCCcEEEEEEcChHHHHHHH-hhcCCeecceEEEEeeCCCC
Q 027228 4 TRTVQVKNVSD-LAHEREIHEFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPAENY 80 (226)
Q Consensus 4 ~~tV~V~NLs~-~tTe~~L~efFs~cG~I~sI~i~~d~~~~~~A~V~F~~~~aa~tAl-~Lng~~l~gr~I~V~~a~~~ 80 (226)
.++|||+|||+ .+++++|+++|+.||+|.+|.|.++. .++|||+|.++++|..|+ .|||..|.|+.|.|..+...
T Consensus 34 ~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~--~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~~ 110 (229)
T 2adc_A 34 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK--KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQ 110 (229)
T ss_dssp CSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT--SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCSCC
T ss_pred CCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC--CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecCc
Confidence 58999999999 99999999999999999999999875 679999999999999999 59999999999999877543
No 182
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.47 E-value=8.8e-14 Score=130.25 Aligned_cols=76 Identities=20% Similarity=0.274 Sum_probs=70.0
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecC---CCCcEEEEEEcChHHHHHHH-hhcCCeecceEEEEeeCCC
Q 027228 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREY---GQSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPAEN 79 (226)
Q Consensus 4 ~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~---~~~~~A~V~F~~~~aa~tAl-~Lng~~l~gr~I~V~~a~~ 79 (226)
.++|||+|||+.+|+++|++||+.||.|..|.|+.+. ...+||||+|.++++|..|| .|||..|.|+.|.|..+..
T Consensus 102 ~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a~~ 181 (437)
T 3pgw_S 102 FKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERG 181 (437)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEeCC
Confidence 3799999999999999999999999999999999874 24689999999999999999 7999999999999997754
No 183
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.47 E-value=1.5e-13 Score=105.00 Aligned_cols=72 Identities=13% Similarity=0.167 Sum_probs=63.6
Q ss_pred ccE-EEEeCCCCcccHHH----HHHHcccC-CceeEEEEEecCCCCcEEEEEEcChHHHHHHH-hhcCCeecceEEEEee
Q 027228 4 TRT-VQVKNVSDLAHERE----IHEFFSFS-GDIERIEILREYGQSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITP 76 (226)
Q Consensus 4 ~~t-V~V~NLs~~tTe~~----L~efFs~c-G~I~sI~i~~d~~~~~~A~V~F~~~~aa~tAl-~Lng~~l~gr~I~V~~ 76 (226)
..| |||+|||+++++++ |+++|+.| |+|.+|. .|+|||+|.+.++|..|+ .|||..|.||+|+|.-
T Consensus 8 ~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~Vt-------gG~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~ 80 (96)
T 2diu_A 8 CHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSIT-------GCSAILRFINQDSAERAQKRMENEDVFGNRIIVSF 80 (96)
T ss_dssp SSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEECC-------TTCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEES
T ss_pred cceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEEe-------cCEEEEEECCHHHHHHHHHHhcCCccCCceEEEEe
Confidence 345 99999999999998 55899999 5999992 389999999999999999 5999999999999998
Q ss_pred CCCCCC
Q 027228 77 AENYVP 82 (226)
Q Consensus 77 a~~~~~ 82 (226)
+....+
T Consensus 81 A~~~sd 86 (96)
T 2diu_A 81 TPKNRE 86 (96)
T ss_dssp SCCSCC
T ss_pred cCCCcc
Confidence 876554
No 184
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.45 E-value=2.2e-13 Score=107.07 Aligned_cols=73 Identities=19% Similarity=0.285 Sum_probs=65.8
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCC---CCcEEEEEEcChHHHHHHHh-hcCCeecceE--EEEee
Q 027228 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYG---QSKTAFVTFKDAKALEIALL-LSGATIVDQI--VSITP 76 (226)
Q Consensus 4 ~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~~---~~~~A~V~F~~~~aa~tAl~-Lng~~l~gr~--I~V~~ 76 (226)
.++|+|+|||+.+++++|+++|+.||.|.++.+..+.. ..++|||+|.++++|..|+. |||..|.|+. |.|..
T Consensus 88 ~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~~ 166 (167)
T 1fxl_A 88 DANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKF 166 (167)
T ss_dssp TCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEE
T ss_pred CCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEEe
Confidence 47899999999999999999999999999999998762 36899999999999999995 9999999975 77754
No 185
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.44 E-value=2.3e-13 Score=117.44 Aligned_cols=73 Identities=21% Similarity=0.269 Sum_probs=67.9
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCCCCcEEEEEEcChHHHHHHHh-hcCCeecceEEEEeeCCC
Q 027228 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIALL-LSGATIVDQIVSITPAEN 79 (226)
Q Consensus 4 ~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~~~~~~A~V~F~~~~aa~tAl~-Lng~~l~gr~I~V~~a~~ 79 (226)
.++|||+|||+.+|+++|+++|+.||+|.+|.+.++ .++|||+|.++++|..|+. |||..|.|+.|.|..+.+
T Consensus 22 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~---kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~ 95 (261)
T 3sde_A 22 RCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD---RGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFATH 95 (261)
T ss_dssp GGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT---TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC---CcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeeccc
Confidence 579999999999999999999999999999999754 6799999999999999995 999999999999998754
No 186
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.44 E-value=6.5e-13 Score=101.64 Aligned_cols=76 Identities=18% Similarity=0.184 Sum_probs=66.9
Q ss_pred CccEEEEeCCCC-----cccHHHHHHHcccCCceeEEEEEecC----CCCcEEEEEEcChHHHHHHH-hhcCCeecceEE
Q 027228 3 QTRTVQVKNVSD-----LAHEREIHEFFSFSGDIERIEILREY----GQSKTAFVTFKDAKALEIAL-LLSGATIVDQIV 72 (226)
Q Consensus 3 ~~~tV~V~NLs~-----~tTe~~L~efFs~cG~I~sI~i~~d~----~~~~~A~V~F~~~~aa~tAl-~Lng~~l~gr~I 72 (226)
.+++|++.|+.. .-++++|++.|+.||+|.+|.|.+++ ...|+|||+|.++++|..|+ .|||..|+||.|
T Consensus 7 ~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~i 86 (105)
T 2pe8_A 7 PTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRVV 86 (105)
T ss_dssp CCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcEE
Confidence 368999999973 34799999999999999999999874 24689999999999999999 699999999999
Q ss_pred EEeeCC
Q 027228 73 SITPAE 78 (226)
Q Consensus 73 ~V~~a~ 78 (226)
.|..+.
T Consensus 87 ~v~~a~ 92 (105)
T 2pe8_A 87 KACFYN 92 (105)
T ss_dssp EEEECC
T ss_pred EEEEcC
Confidence 999774
No 187
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.44 E-value=2.6e-13 Score=117.54 Aligned_cols=76 Identities=25% Similarity=0.361 Sum_probs=70.3
Q ss_pred ccEEEEeCCCCc-ccHHHHHHHcccCCceeEEEEEecCC----CCcEEEEEEcChHHHHHHHhhcCCeecceEEEEeeCC
Q 027228 4 TRTVQVKNVSDL-AHEREIHEFFSFSGDIERIEILREYG----QSKTAFVTFKDAKALEIALLLSGATIVDQIVSITPAE 78 (226)
Q Consensus 4 ~~tV~V~NLs~~-tTe~~L~efFs~cG~I~sI~i~~d~~----~~~~A~V~F~~~~aa~tAl~Lng~~l~gr~I~V~~a~ 78 (226)
.++|||+|||+. +|+++|+++|+.||.|.+|.+..+.. ..++|||+|.++++|..|+.|||..|+|+.|.|..+.
T Consensus 210 ~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~~l~g~~~~g~~i~V~~a~ 289 (292)
T 2ghp_A 210 GREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERALQMNRSLLGNREISVSLAD 289 (292)
T ss_dssp TTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHGGGTTEEETTEEEEEEECC
T ss_pred CceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHHHhcCCEECCcEEEEEEec
Confidence 579999999999 99999999999999999999998743 4689999999999999999999999999999999775
Q ss_pred C
Q 027228 79 N 79 (226)
Q Consensus 79 ~ 79 (226)
.
T Consensus 290 ~ 290 (292)
T 2ghp_A 290 K 290 (292)
T ss_dssp C
T ss_pred C
Confidence 4
No 188
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.44 E-value=2.9e-13 Score=105.56 Aligned_cols=73 Identities=19% Similarity=0.216 Sum_probs=65.8
Q ss_pred CccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCCCCcEEEEEEcChHHHHHHH-hhcCCeecceEEEEeeCCCC
Q 027228 3 QTRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPAENY 80 (226)
Q Consensus 3 ~~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~~~~~~A~V~F~~~~aa~tAl-~Lng~~l~gr~I~V~~a~~~ 80 (226)
..++|||+|+ .+|+++|+++|+.||+|.+|.|. ...+||||+|.+.++|..|+ .|||..|.|+.|.|..+...
T Consensus 38 ~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~---~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~ 111 (121)
T 2bz2_A 38 KGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD---PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQ 111 (121)
T ss_dssp CCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE---TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCSS
T ss_pred CCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe---CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCCC
Confidence 3579999995 69999999999999999999996 34679999999999999999 69999999999999987543
No 189
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=7.8e-13 Score=100.96 Aligned_cols=75 Identities=17% Similarity=0.227 Sum_probs=65.8
Q ss_pred ccEEEEeCCCCcc-----------cHHHHHHHcccCCceeEEEEEecCCCCcEEEEEEcChHHHHHHH-hhcCCeecceE
Q 027228 4 TRTVQVKNVSDLA-----------HEREIHEFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIAL-LLSGATIVDQI 71 (226)
Q Consensus 4 ~~tV~V~NLs~~t-----------Te~~L~efFs~cG~I~sI~i~~d~~~~~~A~V~F~~~~aa~tAl-~Lng~~l~gr~ 71 (226)
+++|+|.||.... ++++|+++|+.||+|.+|.| .+....|||||+|.++++|..|+ .|||..|+|+.
T Consensus 15 s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~ 93 (112)
T 2dit_A 15 ERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDRHPDGVASVSFRDPEEADYCIQTLDGRWFGGRQ 93 (112)
T ss_dssp CCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETTCTTCEEEEECSCHHHHHHHHHHSTTCEETTEE
T ss_pred ceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecCCCCEEEEEEECCHHHHHHHHHHcCCCEECCcE
Confidence 6899999995443 36899999999999999966 55556899999999999999999 69999999999
Q ss_pred EEEeeCCC
Q 027228 72 VSITPAEN 79 (226)
Q Consensus 72 I~V~~a~~ 79 (226)
|.|..+..
T Consensus 94 l~v~~a~~ 101 (112)
T 2dit_A 94 ITAQAWDG 101 (112)
T ss_dssp CEEEECCS
T ss_pred EEEEEeCC
Confidence 99998754
No 190
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.43 E-value=9.5e-14 Score=111.14 Aligned_cols=79 Identities=16% Similarity=0.170 Sum_probs=67.5
Q ss_pred CccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEe--cCCCCcEEEEEEcChHHHHHHHhhcCCeecceEEEEeeCCCC
Q 027228 3 QTRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILR--EYGQSKTAFVTFKDAKALEIALLLSGATIVDQIVSITPAENY 80 (226)
Q Consensus 3 ~~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~--d~~~~~~A~V~F~~~~aa~tAl~Lng~~l~gr~I~V~~a~~~ 80 (226)
..++|||+|||+.+|+++|+++|+.||.|..+.+.. .+...++|||+|.++++|..|+.|||..|.|+.|.|..+...
T Consensus 12 ~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~v~~~~~~ 91 (175)
T 1fje_B 12 TPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPKGR 91 (175)
T ss_dssp SSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGEEETTEEEEEECCCCS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHHhcCCCEeCCeEEEEecCCCc
Confidence 368999999999999999999999999887733322 224578999999999999999999999999999999987654
Q ss_pred C
Q 027228 81 V 81 (226)
Q Consensus 81 ~ 81 (226)
.
T Consensus 92 ~ 92 (175)
T 1fje_B 92 D 92 (175)
T ss_dssp S
T ss_pred c
Confidence 3
No 191
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.42 E-value=4.4e-13 Score=115.56 Aligned_cols=72 Identities=18% Similarity=0.263 Sum_probs=67.1
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCCCCcEEEEEEcChHHHHHHH-hhcCCeec-ceEEEEeeC
Q 027228 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIAL-LLSGATIV-DQIVSITPA 77 (226)
Q Consensus 4 ~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~~~~~~A~V~F~~~~aa~tAl-~Lng~~l~-gr~I~V~~a 77 (226)
.++|||+|||+.+|+++|+++|+.||.|.+|++..+. .++|||+|.+.++|..|+ .|||..|. |+.|.|..+
T Consensus 207 ~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~--~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a 280 (282)
T 3pgw_A 207 NHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR--HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFA 280 (282)
T ss_pred CCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC--CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEe
Confidence 4789999999999999999999999999999999654 579999999999999999 59999999 999999865
No 192
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.40 E-value=6e-13 Score=116.35 Aligned_cols=75 Identities=27% Similarity=0.314 Sum_probs=68.0
Q ss_pred CccEEEEeCCCCcc---------cHHHHHHHcccCCceeEEEEEecCCCCcEEEEEEcChHHHHHHH-hhcCCee-----
Q 027228 3 QTRTVQVKNVSDLA---------HEREIHEFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIAL-LLSGATI----- 67 (226)
Q Consensus 3 ~~~tV~V~NLs~~t---------Te~~L~efFs~cG~I~sI~i~~d~~~~~~A~V~F~~~~aa~tAl-~Lng~~l----- 67 (226)
..+||||+||++.+ +|++|+++|+.+|+|++|+|+.+ .+||||+|.+.++|+.|+ .|||..|
T Consensus 133 ~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~---kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~~ 209 (240)
T 3u1l_A 133 KNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES---KNCGFVKFKYQANAEFAKEAMSNQTLLLPSD 209 (240)
T ss_dssp CCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG---GTEEEEEESSHHHHHHHHHHHTTCCCCCTTS
T ss_pred CCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC---CCEEEEEeCCHHHHHHHHHHhCCCEEecccc
Confidence 46899999999998 89999999999999999999865 679999999999999999 6999999
Q ss_pred -------cceEEEEeeCCCC
Q 027228 68 -------VDQIVSITPAENY 80 (226)
Q Consensus 68 -------~gr~I~V~~a~~~ 80 (226)
.|+.|.|..+.+.
T Consensus 210 ~e~~~~~~gr~L~V~wA~~~ 229 (240)
T 3u1l_A 210 KEWDDRREGTGLLVKWANED 229 (240)
T ss_dssp TTGGGGGGSCCCEEEECC--
T ss_pred ccccccCCCCEEEEEEccCC
Confidence 8999999987654
No 193
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.40 E-value=8.9e-13 Score=113.74 Aligned_cols=76 Identities=11% Similarity=0.041 Sum_probs=69.3
Q ss_pred ccEEEEeCCCCc-ccHHHHHHHcccCCceeEEEEEecCC--CCcEEEEEEcChHHHHHHHh-hcCCeecceEEEEeeCCC
Q 027228 4 TRTVQVKNVSDL-AHEREIHEFFSFSGDIERIEILREYG--QSKTAFVTFKDAKALEIALL-LSGATIVDQIVSITPAEN 79 (226)
Q Consensus 4 ~~tV~V~NLs~~-tTe~~L~efFs~cG~I~sI~i~~d~~--~~~~A~V~F~~~~aa~tAl~-Lng~~l~gr~I~V~~a~~ 79 (226)
.++|+|+|||+. +|+++|+++|+.||.|.++.+..+.. ..++|||+|.++++|..|+. |||..|+|+.|.|..+.+
T Consensus 184 ~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 263 (284)
T 3smz_A 184 SRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSFCAP 263 (284)
T ss_dssp CSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECSSCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCS
T ss_pred ccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEEecC
Confidence 579999999999 59999999999999999999998762 36899999999999999995 999999999999988744
No 194
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.37 E-value=5.5e-13 Score=109.10 Aligned_cols=73 Identities=15% Similarity=0.310 Sum_probs=67.3
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCC-ceeEEEEEecCCCCcEEEEEEcChHHHHHHHh-hcCCeec-ceEEEEeeCC
Q 027228 4 TRTVQVKNVSDLAHEREIHEFFSFSG-DIERIEILREYGQSKTAFVTFKDAKALEIALL-LSGATIV-DQIVSITPAE 78 (226)
Q Consensus 4 ~~tV~V~NLs~~tTe~~L~efFs~cG-~I~sI~i~~d~~~~~~A~V~F~~~~aa~tAl~-Lng~~l~-gr~I~V~~a~ 78 (226)
.++|+|+|||+.+++++|+++|+.|| +|.+|.+.++. .++|||+|.++++|..|+. |||..|+ |+.|.|..+.
T Consensus 120 ~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~--~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~ 195 (198)
T 1qm9_A 120 SATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD--RKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSK 195 (198)
T ss_dssp CCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTT--SSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEEC
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCC--CcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeec
Confidence 57899999999999999999999999 99999997653 6799999999999999995 9999999 9999998653
No 195
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.36 E-value=1.9e-12 Score=111.62 Aligned_cols=77 Identities=13% Similarity=0.121 Sum_probs=70.4
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCC---CCcEEEEEEcChHHHHHHH-hhcCCeecceEEEEeeCCC
Q 027228 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYG---QSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPAEN 79 (226)
Q Consensus 4 ~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~~---~~~~A~V~F~~~~aa~tAl-~Lng~~l~gr~I~V~~a~~ 79 (226)
.++|||+|||+.+|+++|+++|+.||.|.++.+..+.. ..|+|||+|.+++++..|+ .|||..|+|+.|.|..+..
T Consensus 95 ~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~~ 174 (284)
T 3smz_A 95 DALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTDA 174 (284)
T ss_dssp SCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCG
T ss_pred CCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCC
Confidence 47899999999999999999999999999999998752 3579999999999999999 7999999999999988754
Q ss_pred C
Q 027228 80 Y 80 (226)
Q Consensus 80 ~ 80 (226)
.
T Consensus 175 ~ 175 (284)
T 3smz_A 175 G 175 (284)
T ss_dssp G
T ss_pred C
Confidence 3
No 196
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.36 E-value=1.4e-12 Score=110.35 Aligned_cols=73 Identities=15% Similarity=0.310 Sum_probs=67.2
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCC-ceeEEEEEecCCCCcEEEEEEcChHHHHHHHh-hcCCeec-ceEEEEeeCC
Q 027228 4 TRTVQVKNVSDLAHEREIHEFFSFSG-DIERIEILREYGQSKTAFVTFKDAKALEIALL-LSGATIV-DQIVSITPAE 78 (226)
Q Consensus 4 ~~tV~V~NLs~~tTe~~L~efFs~cG-~I~sI~i~~d~~~~~~A~V~F~~~~aa~tAl~-Lng~~l~-gr~I~V~~a~ 78 (226)
.++|||+|||+.+++++|+++|+.|| +|.+|.+.++. .++|||+|.+.++|..|+. |||..|. |+.|.|..+.
T Consensus 151 ~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~--~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~ 226 (229)
T 2adc_A 151 SATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD--RKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSK 226 (229)
T ss_dssp CSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSSS--TTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECS
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEECC--CcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEec
Confidence 57999999999999999999999999 99999997643 6799999999999999995 9999999 9999998764
No 197
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.35 E-value=8e-13 Score=111.46 Aligned_cols=67 Identities=10% Similarity=0.138 Sum_probs=61.6
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCce--eEEEEEecC-CCCcEEEEEEcChHHHHHHH-hhcCCeecce
Q 027228 4 TRTVQVKNVSDLAHEREIHEFFSFSGDI--ERIEILREY-GQSKTAFVTFKDAKALEIAL-LLSGATIVDQ 70 (226)
Q Consensus 4 ~~tV~V~NLs~~tTe~~L~efFs~cG~I--~sI~i~~d~-~~~~~A~V~F~~~~aa~tAl-~Lng~~l~gr 70 (226)
.++|||+|||+.+|+++|+++|+.||.| .++++..+. +.+++|||+|++.++|..|+ .|||..|.|+
T Consensus 123 ~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~ 193 (205)
T 3tyt_A 123 SNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGKSERSSSGLLEWDSKSDALETLGFLNHYQMKNP 193 (205)
T ss_dssp CSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCCSSSSEEEEEECSSHHHHHHHHHHHTTCEECCS
T ss_pred cceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCCCCCceEEEEEeCCHHHHHHHHHHhCCCCccCC
Confidence 4689999999999999999999999999 999998875 34589999999999999999 6999999987
No 198
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.34 E-value=2.3e-12 Score=111.17 Aligned_cols=78 Identities=22% Similarity=0.315 Sum_probs=68.1
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCC--CCcEEEEEEcChHHHHHHH-hhcC-Ceec---ceEEEEee
Q 027228 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYG--QSKTAFVTFKDAKALEIAL-LLSG-ATIV---DQIVSITP 76 (226)
Q Consensus 4 ~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~~--~~~~A~V~F~~~~aa~tAl-~Lng-~~l~---gr~I~V~~ 76 (226)
.++|||+|||+.+|+++|+++|+.||+|.+|.+..+.. ..++|||+|.++++|..|+ .||| ..+. |++|.|.+
T Consensus 96 ~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~~ 175 (261)
T 3sde_A 96 GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEP 175 (261)
T ss_dssp SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEEEE
T ss_pred CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEEee
Confidence 47999999999999999999999999999999998852 3689999999999999999 5754 4444 99999998
Q ss_pred CCCCC
Q 027228 77 AENYV 81 (226)
Q Consensus 77 a~~~~ 81 (226)
+....
T Consensus 176 ~~~~~ 180 (261)
T 3sde_A 176 MEQFD 180 (261)
T ss_dssp CCCEE
T ss_pred ccccC
Confidence 87654
No 199
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.29 E-value=1.5e-12 Score=99.17 Aligned_cols=70 Identities=16% Similarity=0.282 Sum_probs=59.5
Q ss_pred EeCCCCcccHHHHHHHc------------ccCCceeEEEEEecCC--CCcEEEEEEcChHHHHHHH-hhcCCeecceEEE
Q 027228 9 VKNVSDLAHEREIHEFF------------SFSGDIERIEILREYG--QSKTAFVTFKDAKALEIAL-LLSGATIVDQIVS 73 (226)
Q Consensus 9 V~NLs~~tTe~~L~efF------------s~cG~I~sI~i~~d~~--~~~~A~V~F~~~~aa~tAl-~Lng~~l~gr~I~ 73 (226)
+.|||+.+++++|++.| +.||+|.+|.|.++.. ..|+|||+|+++++|..|+ .|||..|+||.|.
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~ 99 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIH 99 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEE
Confidence 45666777888777666 9999999999998752 4689999999999999999 5999999999999
Q ss_pred EeeCC
Q 027228 74 ITPAE 78 (226)
Q Consensus 74 V~~a~ 78 (226)
|..++
T Consensus 100 v~~sp 104 (104)
T 1jmt_A 100 AELSP 104 (104)
T ss_dssp EEECC
T ss_pred EEEcC
Confidence 98653
No 200
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.28 E-value=8.8e-12 Score=95.18 Aligned_cols=75 Identities=20% Similarity=0.216 Sum_probs=64.6
Q ss_pred ccEEEEeCCCC--cc--------cHHHHHHHcccCCceeEEEEEecCC-----CCcEEEEEEcChHHHHHHH-hhcCCee
Q 027228 4 TRTVQVKNVSD--LA--------HEREIHEFFSFSGDIERIEILREYG-----QSKTAFVTFKDAKALEIAL-LLSGATI 67 (226)
Q Consensus 4 ~~tV~V~NLs~--~t--------Te~~L~efFs~cG~I~sI~i~~d~~-----~~~~A~V~F~~~~aa~tAl-~Lng~~l 67 (226)
++.|.+.|+-. .. .+++|++.|+.||+|.+|.|+++.. ..|++||+|+++++|..|+ .|||..|
T Consensus 5 s~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~f 84 (105)
T 3v4m_A 5 TEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKF 84 (105)
T ss_dssp CSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred CeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCEe
Confidence 57899999833 22 4579999999999999999988752 3689999999999999999 6999999
Q ss_pred cceEEEEeeCC
Q 027228 68 VDQIVSITPAE 78 (226)
Q Consensus 68 ~gr~I~V~~a~ 78 (226)
+||.|.|..++
T Consensus 85 ~GR~i~v~~~~ 95 (105)
T 3v4m_A 85 ANRVVVTKYCD 95 (105)
T ss_dssp TTEECEEEEEC
T ss_pred CCCEEEEEEeC
Confidence 99999998653
No 201
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.24 E-value=3.2e-11 Score=94.35 Aligned_cols=75 Identities=23% Similarity=0.239 Sum_probs=65.3
Q ss_pred ccEEEEeCCCCc-----ccHHHHHHHcccCCceeEEEEEecCC-------CCcEEEEEEcChHHHHHHH-hhcCCeecce
Q 027228 4 TRTVQVKNVSDL-----AHEREIHEFFSFSGDIERIEILREYG-------QSKTAFVTFKDAKALEIAL-LLSGATIVDQ 70 (226)
Q Consensus 4 ~~tV~V~NLs~~-----tTe~~L~efFs~cG~I~sI~i~~d~~-------~~~~A~V~F~~~~aa~tAl-~Lng~~l~gr 70 (226)
+++|++.|+-.. --+++|++.|+.||+|.+|.|.++.. ..|++||+|+++++|..|+ .|||..|+||
T Consensus 20 s~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~GR 99 (118)
T 3ue2_A 20 STVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGR 99 (118)
T ss_dssp CCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence 689999999532 24799999999999999999998752 1389999999999999999 6999999999
Q ss_pred EEEEeeCC
Q 027228 71 IVSITPAE 78 (226)
Q Consensus 71 ~I~V~~a~ 78 (226)
.|.|..++
T Consensus 100 ~i~v~~~~ 107 (118)
T 3ue2_A 100 KVVAEVYD 107 (118)
T ss_dssp ECEEEEEC
T ss_pred EEEEEEcC
Confidence 99998764
No 202
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.12 E-value=5e-10 Score=85.18 Aligned_cols=73 Identities=19% Similarity=0.194 Sum_probs=59.6
Q ss_pred cEEEEeCCC-------CcccHHHHHHHcccCCceeEEEEEecCCCCcEEEEEEcChHHHHHHHhhcCCeecceEEEEeeC
Q 027228 5 RTVQVKNVS-------DLAHEREIHEFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIALLLSGATIVDQIVSITPA 77 (226)
Q Consensus 5 ~tV~V~NLs-------~~tTe~~L~efFs~cG~I~sI~i~~d~~~~~~A~V~F~~~~aa~tAl~Lng~~l~gr~I~V~~a 77 (226)
+.+.|.-.. +.+++++|+++|+.||+|.+|.|+. ...|||||+|+++++|..|+.. +..+.|++|.|..+
T Consensus 11 ~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~~--~~rGfaFVeF~~~~~A~~Ai~~-~~~~~g~~l~V~~a 87 (100)
T 2d9o_A 11 PKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLSS--KKPGTAVVEFATVKAAELAVQN-EVGLVDNPLKISWL 87 (100)
T ss_dssp CEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEES--SSSSEEEEEESCHHHHHHHHHT-CCBCSSSBCEEECS
T ss_pred ceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEcc--CCCCEEEEEECCHHHHHHHHHh-cCCCCCCeEEEEEc
Confidence 456666544 4589999999999999999999983 4578999999999999999964 34478999999876
Q ss_pred CCC
Q 027228 78 ENY 80 (226)
Q Consensus 78 ~~~ 80 (226)
...
T Consensus 88 ~~~ 90 (100)
T 2d9o_A 88 EGQ 90 (100)
T ss_dssp SCC
T ss_pred cCC
Confidence 543
No 203
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.11 E-value=2.2e-10 Score=90.68 Aligned_cols=73 Identities=18% Similarity=0.195 Sum_probs=64.1
Q ss_pred CCccEEEEeCCCCc-ccHHHHHHHcccCCceeEEEEEecCCCCcEEEEEEcC-hHHHHHHH-hh--cCCeecceEEEEee
Q 027228 2 QQTRTVQVKNVSDL-AHEREIHEFFSFSGDIERIEILREYGQSKTAFVTFKD-AKALEIAL-LL--SGATIVDQIVSITP 76 (226)
Q Consensus 2 s~~~tV~V~NLs~~-tTe~~L~efFs~cG~I~sI~i~~d~~~~~~A~V~F~~-~~aa~tAl-~L--ng~~l~gr~I~V~~ 76 (226)
..+..|+|+||++. +++++|+++|+.+|+|.+|++.+++. +|||.|.+ +.+|..|+ .| +|.+|.|..++++.
T Consensus 16 ~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~---tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~ev 92 (121)
T 1owx_A 16 KIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK---EGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWEV 92 (121)
T ss_dssp CCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS---EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEEE
T ss_pred cCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC---EEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEEE
Confidence 34678999999999 99999999999999999999987754 79999999 78888888 57 47889999998875
Q ss_pred C
Q 027228 77 A 77 (226)
Q Consensus 77 a 77 (226)
.
T Consensus 93 L 93 (121)
T 1owx_A 93 L 93 (121)
T ss_dssp C
T ss_pred C
Confidence 4
No 204
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.10 E-value=1.3e-10 Score=106.36 Aligned_cols=71 Identities=14% Similarity=0.257 Sum_probs=61.5
Q ss_pred ccEEEEeC--CCCcccHHHHHHHcccCCceeEEEEEecCCCCcEEEEEEcChHHHHHHH-hhcCCeec---ce--EEEEe
Q 027228 4 TRTVQVKN--VSDLAHEREIHEFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIAL-LLSGATIV---DQ--IVSIT 75 (226)
Q Consensus 4 ~~tV~V~N--Ls~~tTe~~L~efFs~cG~I~sI~i~~d~~~~~~A~V~F~~~~aa~tAl-~Lng~~l~---gr--~I~V~ 75 (226)
++++||+| |++.+||++|+++|+.+|+|++|.|.+ .++||||+|++.++|+.|+ .|||..+. |+ .|.|.
T Consensus 18 s~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~---~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ly~~ 94 (345)
T 3tht_A 18 TQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP---NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLN 94 (345)
T ss_dssp CSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT---TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEE
T ss_pred CCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC---CCCEEEEEECCHHHHHHHHHHhCCCccccccCCceEEEEE
Confidence 57999999 578999999999999999999998864 3689999999999999999 59999984 45 56666
Q ss_pred eC
Q 027228 76 PA 77 (226)
Q Consensus 76 ~a 77 (226)
-.
T Consensus 95 ~~ 96 (345)
T 3tht_A 95 FV 96 (345)
T ss_dssp EC
T ss_pred Ee
Confidence 54
No 205
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.10 E-value=2.6e-10 Score=88.74 Aligned_cols=74 Identities=15% Similarity=0.173 Sum_probs=63.6
Q ss_pred ccEEEEeCCCCcc----------cHHHHHHHcccCCceeEEEEEecCCCCcEEEEEEcChHHHHHHH-hhcCCeecceEE
Q 027228 4 TRTVQVKNVSDLA----------HEREIHEFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIAL-LLSGATIVDQIV 72 (226)
Q Consensus 4 ~~tV~V~NLs~~t----------Te~~L~efFs~cG~I~sI~i~~d~~~~~~A~V~F~~~~aa~tAl-~Lng~~l~gr~I 72 (226)
+++|.+.|+=..- -+++|++.|+.+|+|.+|.+.++. ..|++||+|+++++|..|+ .|||..|+||.|
T Consensus 7 s~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~-~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~i 85 (114)
T 3s6e_A 7 TQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS-AQGNVYVKCPSIAAAIAAVNALHGRWFAGKMI 85 (114)
T ss_dssp CSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC-TTCCEEEECSSHHHHHHHHHHHTTCEETTEEC
T ss_pred CcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC-CcEEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 5788888885432 356899999999999999997654 4789999999999999999 699999999999
Q ss_pred EEeeCC
Q 027228 73 SITPAE 78 (226)
Q Consensus 73 ~V~~a~ 78 (226)
.|..++
T Consensus 86 ~v~~~~ 91 (114)
T 3s6e_A 86 TAAYVP 91 (114)
T ss_dssp EEEEEC
T ss_pred EEEEEc
Confidence 998764
No 206
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.97 E-value=1.7e-09 Score=81.70 Aligned_cols=69 Identities=22% Similarity=0.303 Sum_probs=60.4
Q ss_pred cEEEEeCCCC----cccH----HHHHHHcccCCceeEEEEEecCCCCcEEEEEEcChHHHHHHHhhcCCeecceEEEEee
Q 027228 5 RTVQVKNVSD----LAHE----REIHEFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIALLLSGATIVDQIVSITP 76 (226)
Q Consensus 5 ~tV~V~NLs~----~tTe----~~L~efFs~cG~I~sI~i~~d~~~~~~A~V~F~~~~aa~tAl~Lng~~l~gr~I~V~~ 76 (226)
.||.|.-.+. ..-+ .+|.+.|+.||+|..+++..+. +||+|.+.++|.+|+.|||..++||.|+|..
T Consensus 8 ~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~-----~fVtF~d~~sAlaAi~mnG~~v~Gr~LkV~l 82 (91)
T 2dnr_A 8 GTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK-----MWVTFLEGSSALNVLSLNGKELLNRTITIAL 82 (91)
T ss_dssp CEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS-----EEEEESSHHHHHHGGGGTTCEETTEEEEEEE
T ss_pred CeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC-----EEEEECChHHHHHHHhcCCeEeCCeEEEEEe
Confidence 5888888762 3333 6799999999999999999764 9999999999999999999999999999998
Q ss_pred CC
Q 027228 77 AE 78 (226)
Q Consensus 77 a~ 78 (226)
+.
T Consensus 83 kt 84 (91)
T 2dnr_A 83 KS 84 (91)
T ss_dssp CC
T ss_pred CC
Confidence 75
No 207
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.84 E-value=4.7e-09 Score=79.90 Aligned_cols=69 Identities=23% Similarity=0.239 Sum_probs=60.4
Q ss_pred cEEEEeCCCCc-----ccH----HHHHHHcccCCceeEEEEEecCCCCcEEEEEEcChHHHHHHHhhcCCeecceEEEEe
Q 027228 5 RTVQVKNVSDL-----AHE----REIHEFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIALLLSGATIVDQIVSIT 75 (226)
Q Consensus 5 ~tV~V~NLs~~-----tTe----~~L~efFs~cG~I~sI~i~~d~~~~~~A~V~F~~~~aa~tAl~Lng~~l~gr~I~V~ 75 (226)
.||.|..+++. .-+ .+|.+.|+.||+|..+++..++ +||+|.+.++|.+|+.|||..++||.|+|+
T Consensus 16 ~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~-----~fVtF~d~~sAl~AI~ldG~~v~Gr~L~V~ 90 (95)
T 1ufw_A 16 ATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ-----MLVTFADSHSALSVLDVDGMKVKGRAVKIS 90 (95)
T ss_dssp CEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE-----EEEECSCSHHHHHHHHGGGSEETTEEEEEE
T ss_pred CeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc-----EEEEEcChHHHHHHHhcCCeeeCCeEEEEe
Confidence 69999988754 222 5689999999999999999774 999999999999999999999999999998
Q ss_pred eCC
Q 027228 76 PAE 78 (226)
Q Consensus 76 ~a~ 78 (226)
...
T Consensus 91 ~k~ 93 (95)
T 1ufw_A 91 GPS 93 (95)
T ss_dssp CCC
T ss_pred ccC
Confidence 653
No 208
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.52 E-value=1.9e-07 Score=78.20 Aligned_cols=63 Identities=24% Similarity=0.217 Sum_probs=55.6
Q ss_pred ccHHHHHHHcccCCceeEEEEEecCC-------CCcEEEEEEcChHHHHHHH-hhcCCeecceEEEEeeCC
Q 027228 16 AHEREIHEFFSFSGDIERIEILREYG-------QSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPAE 78 (226)
Q Consensus 16 tTe~~L~efFs~cG~I~sI~i~~d~~-------~~~~A~V~F~~~~aa~tAl-~Lng~~l~gr~I~V~~a~ 78 (226)
-.+++|++.|+.+|+|.++.+.++.. ..|++||+|.+.+++.+|+ .|||..++||.|.|..++
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 211 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcC
Confidence 46789999999999999999986532 2589999999999999999 699999999999998764
No 209
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.38 E-value=8.6e-07 Score=69.35 Aligned_cols=71 Identities=20% Similarity=0.315 Sum_probs=64.4
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccC-----CceeEEEEEecCCCCcEEEEEEcChHHHHHHH-hhcCCeecceEEEEeeC
Q 027228 4 TRTVQVKNVSDLAHEREIHEFFSFS-----GDIERIEILREYGQSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPA 77 (226)
Q Consensus 4 ~~tV~V~NLs~~tTe~~L~efFs~c-----G~I~sI~i~~d~~~~~~A~V~F~~~~aa~tAl-~Lng~~l~gr~I~V~~a 77 (226)
.++|-+-|||..+++..|+.|.... |.|..|.+.+| .+-|.|+|+|...|-+|. .|||.+|.||.|++...
T Consensus 21 ~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pD---H~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~gTv 97 (117)
T 2l9w_A 21 ETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSD---FNGAIIIFRDSKFAAKMLMILNGSQFQGKVIRSGTI 97 (117)
T ss_dssp TSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETT---TTEEEEECSCHHHHHHHHHHHSSEEETTEEEEEECH
T ss_pred CcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecC---CCceEEEEccchhhHHHHhhcCCeeecCeEEEecCH
Confidence 5899999999999999999999999 99999999987 458999999998877776 69999999999999743
No 210
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.14 E-value=1.5e-05 Score=61.34 Aligned_cols=74 Identities=18% Similarity=0.267 Sum_probs=65.2
Q ss_pred ccEEEEeCCCCcccHHHHHHHccc-----CCceeEEEEEecCCCCcEEEEEEcChHHHHHHHhhcCCeecceEEEEeeCC
Q 027228 4 TRTVQVKNVSDLAHEREIHEFFSF-----SGDIERIEILREYGQSKTAFVTFKDAKALEIALLLSGATIVDQIVSITPAE 78 (226)
Q Consensus 4 ~~tV~V~NLs~~tTe~~L~efFs~-----cG~I~sI~i~~d~~~~~~A~V~F~~~~aa~tAl~Lng~~l~gr~I~V~~a~ 78 (226)
.++|.|.|||+.+.++.|.-||.. =|+|++++... +.|.|+|.++..+++.|.-....|.+.+|.|.|+.
T Consensus 8 ~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~-----~~AvItF~d~~va~rVL~k~~H~L~~~~LsV~P~~ 82 (104)
T 2dhx_A 8 GVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG-----CGGVLTFREPADAERVLAQADHELHGAQLSLRPAP 82 (104)
T ss_dssp CCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET-----TEEEEEESSHHHHHHHHTCSCCBSSSSBCEEEECC
T ss_pred ccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC-----CcEEEEEcChHHHHHHhcCCcceecCeEEEEEcCC
Confidence 579999999999999999999986 26899999864 58999999999999999888899999999999876
Q ss_pred CCCC
Q 027228 79 NYVP 82 (226)
Q Consensus 79 ~~~~ 82 (226)
....
T Consensus 83 ~~~~ 86 (104)
T 2dhx_A 83 PRAP 86 (104)
T ss_dssp CCCC
T ss_pred CCCc
Confidence 5543
No 211
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.80 E-value=0.00017 Score=56.79 Aligned_cols=72 Identities=14% Similarity=0.155 Sum_probs=60.9
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCCCCcEEEEEEcChHHHHHHHhhcCCeecc-eEEEEeeCCC
Q 027228 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIALLLSGATIVD-QIVSITPAEN 79 (226)
Q Consensus 4 ~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~~~~~~A~V~F~~~~aa~tAl~Lng~~l~g-r~I~V~~a~~ 79 (226)
.+.|.|-+.|+.. -..|.+.|+.||+|.+.... .....-+|.|.++.+|++||..||..|+| --|=|.|+.+
T Consensus 24 ~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~---~~~NWihI~Y~s~~~A~rAL~kNG~ii~g~~mIGV~p~~d 96 (119)
T 1wwh_A 24 DTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMS---NTGNWMHIRYQSKLQARKALSKDGRIFGESIMIGVKPCID 96 (119)
T ss_dssp GGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEEC---SSSSEEEEEESSHHHHHHHHTTTTCEETTTEECEEEECCC
T ss_pred CCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccC---CCCCeEEEEeCCHHHHHHHHHhCCeEecCCEEEEEEECCC
Confidence 4689999999996 56788889999999998872 23569999999999999999999999985 5688888754
No 212
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.07 E-value=0.0021 Score=49.45 Aligned_cols=72 Identities=10% Similarity=0.084 Sum_probs=61.9
Q ss_pred ccEEEEeCCCCcc-c----HHHHHHHcccCCceeEEEEEecCCCCcEEEEEEcChHHHHHHH-hhcCCeecceEEEEeeC
Q 027228 4 TRTVQVKNVSDLA-H----EREIHEFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPA 77 (226)
Q Consensus 4 ~~tV~V~NLs~~t-T----e~~L~efFs~cG~I~sI~i~~d~~~~~~A~V~F~~~~aa~tAl-~Lng~~l~gr~I~V~~a 77 (226)
..|++|+||++.+ . .+.++++|..++++.+....+. .+-.-|.|.++++|..|- .|+|..+.|+.|+|.-+
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkS---FRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YFg 81 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKS---FKRVRINFSNPLSAADARLRLHKTEFLGKEMKLYFA 81 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETT---TTEEEEECSSTTHHHHHHHTSTTSEETTEECEEECC
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCc---ceEEEEEeCChHHHHHHHHHhccceecCceeEEEec
Confidence 4799999999865 2 2577999999999999888754 557899999999999886 79999999999999877
Q ss_pred C
Q 027228 78 E 78 (226)
Q Consensus 78 ~ 78 (226)
.
T Consensus 82 q 82 (104)
T 1wey_A 82 Q 82 (104)
T ss_dssp C
T ss_pred C
Confidence 6
No 213
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.01 E-value=0.0035 Score=46.90 Aligned_cols=66 Identities=12% Similarity=0.256 Sum_probs=54.8
Q ss_pred cEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecC-----CCCcEEEEEEcChHHHHHHH-hhcCCeecce
Q 027228 5 RTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREY-----GQSKTAFVTFKDAKALEIAL-LLSGATIVDQ 70 (226)
Q Consensus 5 ~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~-----~~~~~A~V~F~~~~aa~tAl-~Lng~~l~gr 70 (226)
..|.|.+|||..||+++.+-++..+++......... .....|||.|.+++++..-. .++|..+.+.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~ 73 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDN 73 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECT
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcC
Confidence 478999999999999999999999888777775543 12468999999998888776 6999988654
No 214
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=96.94 E-value=0.0011 Score=53.02 Aligned_cols=75 Identities=19% Similarity=0.251 Sum_probs=57.0
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeE-EEEEec--------------CC--CCcEEEEEEcChHHHHHHHhhcCCe
Q 027228 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIER-IEILRE--------------YG--QSKTAFVTFKDAKALEIALLLSGAT 66 (226)
Q Consensus 4 ~~tV~V~NLs~~tTe~~L~efFs~cG~I~s-I~i~~d--------------~~--~~~~A~V~F~~~~aa~tAl~Lng~~ 66 (226)
...|.|-+.|+..+ ..|-+.|+.||.|.. +.+.+. +. ....-.|+|.++.+|.+||..||..
T Consensus 7 e~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~NG~i 85 (132)
T 3p3d_A 7 ELAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLENGAV 85 (132)
T ss_dssp -CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTTTTCE
T ss_pred ceEEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHhCCeE
Confidence 46799999966655 556678899999865 322210 00 1457899999999999999999999
Q ss_pred ecceEEEEeeCCC
Q 027228 67 IVDQIVSITPAEN 79 (226)
Q Consensus 67 l~gr~I~V~~a~~ 79 (226)
|+|.-|=|.|+.+
T Consensus 86 i~G~mIGV~Py~~ 98 (132)
T 3p3d_A 86 FNGVLLGVIPYTK 98 (132)
T ss_dssp ETTEECEEEECCH
T ss_pred eCcEEEEEEECCH
Confidence 9999999988853
No 215
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.55 E-value=0.0013 Score=62.27 Aligned_cols=63 Identities=16% Similarity=0.178 Sum_probs=47.3
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCCCCcEEEEEEcChHHHHHHHhhcCCeecc
Q 027228 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIALLLSGATIVD 69 (226)
Q Consensus 4 ~~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~~~~~~A~V~F~~~~aa~tAl~Lng~~l~g 69 (226)
.|+|+|. .|+..++.+|.++|+.+|+|.++.+..+. +-||.|+|.+.+++..++...+....+
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~--g~~~~vef~~~~~~~~~~~~~~~p~~~ 115 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF--GLYAVVEFCQKESIGSLQNGTHTPXXX 115 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS--SEEEEEECC---CCHHHHSSCCCCCCB
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC--CeEEEEEeCCHHHHHHHHhccCCCccc
Confidence 4899998 79999999999999999999999998654 579999999999999877555444333
No 216
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=95.29 E-value=0.034 Score=42.41 Aligned_cols=52 Identities=19% Similarity=0.285 Sum_probs=43.7
Q ss_pred EEEeCCCCcccHHHHHHHcccCCceeEEEEEecCCCCcEEEEEEcChHHHHHHHh-hc
Q 027228 7 VQVKNVSDLAHEREIHEFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIALL-LS 63 (226)
Q Consensus 7 V~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~~~~~~A~V~F~~~~aa~tAl~-Ln 63 (226)
|++-+.|+.....||.++|+.||. -.|..+.|. .|||.|.+++.+..||. ++
T Consensus 8 V~~l~FP~ewKt~Di~~lFs~fgg-v~I~WidDT----sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 8 VLHVTFPKEWKTSDLYQLFSAFGN-IQISWIDDT----SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEECCTTCCHHHHHHHTTTSEE-EEEEEEETT----EEEEEEEEECHHHHHHHHHT
T ss_pred EEEEeCChhhhhHHHHHHHhccCC-EEEEEEcCC----eEEEEecCHHHHHHHHHhcc
Confidence 555599999999999999999994 456666665 79999999999999995 44
No 217
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=95.29 E-value=0.031 Score=42.54 Aligned_cols=50 Identities=20% Similarity=0.313 Sum_probs=42.6
Q ss_pred EEEeCCCCcccHHHHHHHcccCCceeEEEEEecCCCCcEEEEEEcChHHHHHHHh
Q 027228 7 VQVKNVSDLAHEREIHEFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIALL 61 (226)
Q Consensus 7 V~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~~~~~~A~V~F~~~~aa~tAl~ 61 (226)
|++-+.|+.....||.++|+.||- -.|+.+.|. .|||.|.+++.+..||.
T Consensus 18 Vf~l~FP~ewKt~DI~~lFs~fgg-v~I~WidDT----sAlvvf~~~~~a~~al~ 67 (100)
T 1whv_A 18 VLHVTFPKEWKTSDLYQLFSAFGN-IQISWIDDT----SAFVSLSQPEQVQIAVN 67 (100)
T ss_dssp EEEEECCTTCCHHHHHHHHTTTCS-CCCEEEETT----EEEEECSCHHHHHHHHH
T ss_pred EEEEeCChhhhhHHHHHHhhccCC-EEEEEEcCC----eEEEEecCHHHHHHHHH
Confidence 444499999999999999999995 356666665 79999999999999985
No 218
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=94.74 E-value=0.031 Score=42.34 Aligned_cols=66 Identities=11% Similarity=0.187 Sum_probs=46.8
Q ss_pred cEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecC-----CCCcEEEEEEcChHHHHHHH-hhcCCeecce
Q 027228 5 RTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREY-----GQSKTAFVTFKDAKALEIAL-LLSGATIVDQ 70 (226)
Q Consensus 5 ~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~-----~~~~~A~V~F~~~~aa~tAl-~Lng~~l~gr 70 (226)
-.|.|..|||..||+++.+-++.+=++......... .....|||.|.+++++..-. ..+|..+.+.
T Consensus 10 ~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~ 81 (97)
T 2l08_A 10 HMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDS 81 (97)
T ss_dssp CCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECT
T ss_pred eeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeC
Confidence 468999999999999987766654343322222111 12468999999999988776 6999888654
No 219
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=89.71 E-value=0.29 Score=37.83 Aligned_cols=42 Identities=12% Similarity=0.008 Sum_probs=29.6
Q ss_pred EEEEEecCC-CCcEEEEEEcChHHHHHHH-hhcCCeecceEEEE
Q 027228 33 RIEILREYG-QSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSI 74 (226)
Q Consensus 33 sI~i~~d~~-~~~~A~V~F~~~~aa~tAl-~Lng~~l~gr~I~V 74 (226)
++.|..++. ..|+|||+|.++++|+.|+ .+++....+..+.+
T Consensus 2 ~~kl~ln~~~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~ 45 (158)
T 2kn4_A 2 QYKLILNGKTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTY 45 (158)
T ss_dssp EEEEEEECSSCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEE
T ss_pred cEEEEecCccccchhHHHHHHHHhHHHHHHhhcccCCCCCcccc
Confidence 456666663 4689999999999999999 46654443333333
No 220
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=87.77 E-value=0.37 Score=37.13 Aligned_cols=43 Identities=9% Similarity=-0.023 Sum_probs=35.1
Q ss_pred EEecC-CCCcEEEEEEcChHHHHHHH-hh-cCCeecceEEEEeeCCC
Q 027228 36 ILREY-GQSKTAFVTFKDAKALEIAL-LL-SGATIVDQIVSITPAEN 79 (226)
Q Consensus 36 i~~d~-~~~~~A~V~F~~~~aa~tAl-~L-ng~~l~gr~I~V~~a~~ 79 (226)
|..++ .-.|+++|+|.++++|+.|+ .| ||..++| .|.+..+..
T Consensus 5 l~l~g~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~ 50 (150)
T 2i2y_A 5 LILNGKTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATK 50 (150)
T ss_dssp EEECCSSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTT
T ss_pred eeeccccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccC
Confidence 34444 33689999999999999999 68 9999999 999986643
No 221
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=85.58 E-value=1.7 Score=41.05 Aligned_cols=53 Identities=21% Similarity=0.401 Sum_probs=42.1
Q ss_pred cEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCCCCcEEEEEEcChHHHHHHH-hhc
Q 027228 5 RTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIAL-LLS 63 (226)
Q Consensus 5 ~tV~V~NLs~~tTe~~L~efFs~cG~I~sI~i~~d~~~~~~A~V~F~~~~aa~tAl-~Ln 63 (226)
..++|+ +|+.+...+|.+.|+.||.| +|..+.+ ..|+|.|.+++.+..+| .++
T Consensus 441 ~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widd----t~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 441 HVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDD----TSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSS----SEEEEECSCHHHHHHHHHHHT
T ss_pred cEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcC----CeEEEEECCHHHHHHHHHHHH
Confidence 456666 89999999999999999964 5555433 37999999999999988 354
No 222
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=68.70 E-value=11 Score=31.08 Aligned_cols=58 Identities=19% Similarity=0.204 Sum_probs=42.5
Q ss_pred EEEEeCCCC-c--------ccHHHHHHHc--ccCCceeEEEEEecCCCCcEEEEEEcCh-HHHHHHHhhc
Q 027228 6 TVQVKNVSD-L--------AHEREIHEFF--SFSGDIERIEILREYGQSKTAFVTFKDA-KALEIALLLS 63 (226)
Q Consensus 6 tV~V~NLs~-~--------tTe~~L~efF--s~cG~I~sI~i~~d~~~~~~A~V~F~~~-~aa~tAl~Ln 63 (226)
+++|-|+|. . -+..+|++.| +.+.+++-.-+....+..++|.|.|.+. .+...|+.|.
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~kv~~l~~~~Gh~g~aIv~F~~dw~Gf~~A~~fe 83 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTRVRPLWNYLGHSGTAIVEFNKDWNGLHNGLLFD 83 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSEEEEEECSSBEEEEEEEECCSSHHHHHHHHHHH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCceeEecccCCCCceeEEEEecCChHHHHHHHHHH
Confidence 688999997 2 2346899877 7777766555555556788999999876 5777888665
No 223
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=53.52 E-value=27 Score=25.39 Aligned_cols=54 Identities=20% Similarity=0.196 Sum_probs=40.8
Q ss_pred EEEEeCCCCcccHHHHHHHccc-CC-ceeEEEEEecCCCCcEEEEEEcChHH-HHHH
Q 027228 6 TVQVKNVSDLAHEREIHEFFSF-SG-DIERIEILREYGQSKTAFVTFKDAKA-LEIA 59 (226)
Q Consensus 6 tV~V~NLs~~tTe~~L~efFs~-cG-~I~sI~i~~d~~~~~~A~V~F~~~~a-a~tA 59 (226)
..++-.+++.++..+|++.+.. || +|.+|+.+..+...+.|||++...+. .+-|
T Consensus 24 n~~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~~~~KKA~V~L~~~~~a~dva 80 (86)
T 3j21_T 24 NKLTFIVDRRATKQDIKRAVEEIFNVKVEKVNTLITPRGEKKAYVKLKPEYSASEVA 80 (86)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEECTTSCEEEEEEECTTSCHHHHH
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEeEcCCCceEEEEEcCCCCcHHHHH
Confidence 4566778899999999987763 55 78888888776567899999987654 3334
No 224
>3ezj_A General secretion pathway protein GSPD; general secretory pathway, secretin, single chain antibody, transport, immune system, complex; 2.80A {Escherichia coli}
Probab=48.53 E-value=5 Score=33.65 Aligned_cols=69 Identities=9% Similarity=0.120 Sum_probs=47.5
Q ss_pred CCCcccHHHHHHHcccCCceeEEEEEecCCCCcEEEEEEcC---hH----HHHHHHhhcCCee---cceEEEEeeCCCC
Q 027228 12 VSDLAHEREIHEFFSFSGDIERIEILREYGQSKTAFVTFKD---AK----ALEIALLLSGATI---VDQIVSITPAENY 80 (226)
Q Consensus 12 Ls~~tTe~~L~efFs~cG~I~sI~i~~d~~~~~~A~V~F~~---~~----aa~tAl~Lng~~l---~gr~I~V~~a~~~ 80 (226)
++.+...-+|++||..+|++..+.+.-++.-.|.-.+.|.+ ++ .+...|..+|-.+ +|..+.|.+..+.
T Consensus 9 ~sl~f~~~~i~~vl~~la~~~g~n~vvd~~V~G~vtl~~~~~v~~~~~~~~l~~vL~~~gl~~~~~~g~v~~V~p~~~~ 87 (241)
T 3ezj_A 9 FTANFKDTDLKSFIETVGANLNKTIIMGPGVQGAVSIRTMTPLNERQYYQLFLNLLEAQGYAVVPMENDVLKVVKSSAA 87 (241)
T ss_dssp BCCEEEEEEHHHHHHHHHHHHTCEEEC---CCCEEEEEESSCBCHHHHHHHHHHHHHHTTEEEEEETTTEEEEEEC---
T ss_pred EEEEeCCCCHHHHHHHHHHHhCCeEEECCCCcceEEEEeCCCCCHHHHHHHHHHHHHHCCcEEEEcCCCEEEEEEhHHh
Confidence 55666777899999999999999999888656666677754 33 3334456888665 5899999987653
No 225
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=35.58 E-value=15 Score=25.03 Aligned_cols=58 Identities=14% Similarity=0.194 Sum_probs=37.8
Q ss_pred CcccHHHHHHHcccCCc-----eeEEEEEecCCCCcEEEEEEcChHHHHHHH-hhcCCeecceEEEEeeC
Q 027228 14 DLAHEREIHEFFSFSGD-----IERIEILREYGQSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPA 77 (226)
Q Consensus 14 ~~tTe~~L~efFs~cG~-----I~sI~i~~d~~~~~~A~V~F~~~~aa~tAl-~Lng~~l~gr~I~V~~a 77 (226)
..+...+|..++..-|. |-.|++. ..+.||+-.... ++.++ .|++..+.|+.+.|+++
T Consensus 11 ~~~~p~~ivg~i~~~~gi~~~~IG~I~i~-----d~~s~v~v~~~~-~~~~~~~l~~~~i~g~~~~v~~~ 74 (76)
T 2g0c_A 11 KKIRAVDFVGTIAKIDGVSADDIGIITIM-----DNASYVEILNGK-GPHVLKVMKNTTVKGKQLKVNKA 74 (76)
T ss_dssp ----CHHHHHHHHTSTTCCGGGEEEEEEC-----SSCEEEEECTTC-HHHHHHHHTTCCC---CCCEEEC
T ss_pred cCCCHHHHHHHHHHccCCChhhccEEEEe-----CCcEEEEECHHH-HHHHHHHhccccCcCceEEEEEC
Confidence 45778888888875444 5667775 347999988754 44555 79999999999999865
No 226
>1smz_A Transportan in bicellar solution with [DMPC]/[DHPC]=0.33; transport protein; NMR {Synthetic} SCOP: j.6.1.1
Probab=33.04 E-value=15 Score=21.07 Aligned_cols=21 Identities=14% Similarity=0.167 Sum_probs=16.6
Q ss_pred hhccccccHHHHHHHHHhhhh
Q 027228 129 LARGSAIRQEAVNKAKAFDEK 149 (226)
Q Consensus 129 LA~Gyvl~d~ai~kA~~fDek 149 (226)
=..||.||..+|.--+.|-+|
T Consensus 5 NSAGYLLGp~~id~h~s~~dK 25 (27)
T 1smz_A 5 NSAGYLLGKINLKALAALAKK 25 (27)
T ss_dssp HHHTTTTTTTHHHHHHHHHHH
T ss_pred cccceeeccccchhhhhhhhh
Confidence 356999999998877777654
No 227
>4ar0_A Type IV pilus biogenesis and competence protein P; transport, secretin type II secretion system; NMR {Neisseria meningitidis}
Probab=29.54 E-value=11 Score=29.11 Aligned_cols=64 Identities=17% Similarity=0.266 Sum_probs=46.3
Q ss_pred cccHHHHHHHcccCCceeEEEEEecCCCCcEEEEEEcCh---HHHHHHHhhcCC--eecceEEEEeeCC
Q 027228 15 LAHEREIHEFFSFSGDIERIEILREYGQSKTAFVTFKDA---KALEIALLLSGA--TIVDQIVSITPAE 78 (226)
Q Consensus 15 ~tTe~~L~efFs~cG~I~sI~i~~d~~~~~~A~V~F~~~---~aa~tAl~Lng~--~l~gr~I~V~~a~ 78 (226)
+...-+|+++|...+++..+.++-+++-.|.-.+.+.+. +++...|..+|- ...|..|.|.|..
T Consensus 37 nf~da~i~~vl~~la~~tg~NiV~d~~V~G~VTl~l~~v~~~~al~~iL~~~gl~~~~~gnvi~I~p~~ 105 (128)
T 4ar0_A 37 DFQDVEIRTILQILAKESGMNIVASDSVNGKMTLSLKDVPWDQALDLVMQARNLDMRQQGNIVNIAPRD 105 (128)
T ss_dssp EEEEEEHHHHHHHHHHTTCCEEEECTTCCCEEEEEEEEEEHHHHHHHHHHHHTEEEEEETTEEEEEEHH
T ss_pred EEeCCCHHHHHHHHHHHHCCcEEEcCCCCceeeEeecCCCHHHHHHHHHHHcCceEEEECCEEEEEChH
Confidence 344456999999999999999998886667777777775 234444456774 4578899998754
No 228
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=28.57 E-value=1.4e+02 Score=21.45 Aligned_cols=50 Identities=16% Similarity=0.167 Sum_probs=38.9
Q ss_pred EEEEeCCCCcccHHHHHHHccc-CC-ceeEEEEEecCCCCcEEEEEEcChHH
Q 027228 6 TVQVKNVSDLAHEREIHEFFSF-SG-DIERIEILREYGQSKTAFVTFKDAKA 55 (226)
Q Consensus 6 tV~V~NLs~~tTe~~L~efFs~-cG-~I~sI~i~~d~~~~~~A~V~F~~~~a 55 (226)
.-++-.++++++..+|++.+.. || +|.+|+....+...+.|||++...+.
T Consensus 23 n~~~F~V~~~AnK~qIK~ave~lf~VkV~~VNT~~~~~~~KKA~VtL~~g~~ 74 (85)
T 1vq8_S 23 NKLQFAVDDRASKGEVADAVEEQYDVTVEQVNTQNTMDGEKKAVVRLSEDDD 74 (85)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECTTSSEEEEEEECTTSC
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCCceEEEeeecCCCceEEEEEECCCCc
Confidence 3566778899999999987762 34 78888887766557899999987764
No 229
>1yo3_A Dynein light chain 1; structural genomics consortium, microtub malaria, SGC, transport protein; 1.65A {Plasmodium falciparum} PDB: 1f3c_A 1f95_A 1f96_A 1rhw_A 2p1k_A 2p2t_A 3bri_A 3e2b_A 3fm7_E 3glw_A 3dvt_A 2pg1_A 3p8m_A 1pwj_A 2xqq_A 3brl_A 1re6_A 1cmi_A 3dvh_A 3dvp_A ...
Probab=25.99 E-value=57 Score=24.16 Aligned_cols=31 Identities=23% Similarity=0.277 Sum_probs=16.3
Q ss_pred HHHHHHHhhhhcCccHHHHHHHh-hhhhccCc
Q 027228 139 AVNKAKAFDEKHQFTANASAKVI-SFDRRVGF 169 (226)
Q Consensus 139 ai~kA~~fDekh~iss~~~~~v~-~lD~k~g~ 169 (226)
|++.|++.=+++.........|+ +||+|||-
T Consensus 34 a~~~a~~Al~k~~~ekdiA~~IK~~fDkkyG~ 65 (102)
T 1yo3_A 34 AIDCANQALQKYNVEKDIAAHIKKEFDRKYDP 65 (102)
T ss_dssp HHHHHHHHHHHCSSHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHhhhcCC
Confidence 33334333344554455555555 67777764
No 230
>3rjs_A Dynein light chain motor protein; parasite, LC8, DLC8, TGDLC8, LIG PIN, DLC1, dynll1, transport protein; 1.50A {Toxoplasma gondii} PDB: 1pwj_A 2xqq_A 1re6_A 3p8m_A 3dvt_A 2pg1_A 1rhw_A 2p1k_A 2p2t_A 3bri_A 3e2b_A 3fm7_E 3glw_A 3brl_A 3dvh_A 3dvp_A 1pwk_A 1f3c_A 1f95_A 1f96_A ...
Probab=22.65 E-value=76 Score=22.70 Aligned_cols=34 Identities=29% Similarity=0.313 Sum_probs=19.6
Q ss_pred HHHHHHHHHhhhhcCccHHHHHHHh-hhhhccCcc
Q 027228 137 QEAVNKAKAFDEKHQFTANASAKVI-SFDRRVGFT 170 (226)
Q Consensus 137 d~ai~kA~~fDekh~iss~~~~~v~-~lD~k~g~t 170 (226)
.+|++.|++.=++|.+.....+.|+ .||+|||-+
T Consensus 19 ~~a~~~a~~al~~~~~ek~iA~~IK~~fD~kyg~~ 53 (89)
T 3rjs_A 19 QDAIDCANQALEKYNIEKDIAAFIKKEFDRKHNPT 53 (89)
T ss_dssp HHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHCSC
T ss_pred HHHHHHHHHHHHHCCcHHHHHHHHHHHHhcccCCC
Confidence 3455555554456665555555554 678887743
No 231
>2y3m_A Emhofq, protein transport protein HOFQ; secretin, DNA uptake, competence; 2.30A {Aggregatibacter actinomycetemcomitans}
Probab=21.82 E-value=25 Score=27.64 Aligned_cols=65 Identities=5% Similarity=-0.025 Sum_probs=39.9
Q ss_pred cccHHHHHHHcccCCceeEEEEEecCCCCcEEEEEEcC--hH-HHHHHHhhcCC--eecceEEEEeeCCC
Q 027228 15 LAHEREIHEFFSFSGDIERIEILREYGQSKTAFVTFKD--AK-ALEIALLLSGA--TIVDQIVSITPAEN 79 (226)
Q Consensus 15 ~tTe~~L~efFs~cG~I~sI~i~~d~~~~~~A~V~F~~--~~-aa~tAl~Lng~--~l~gr~I~V~~a~~ 79 (226)
+...-+|++||...|+...+.+.-++.-.|.-.+.+.+ .. .+...|.++|- ...|..+.|.+..+
T Consensus 11 ~f~~~~i~~vl~~la~~~g~nivi~~~V~G~vTl~l~~v~~~~~l~~vl~~~gl~~~~~g~vl~V~~~~~ 80 (175)
T 2y3m_A 11 RLKQAPLVPTLQQLALAHNTNLIIDDELQGTVSLQLENVDLDQLFRSVAKIKQLDLWQENGIYYFTKGDT 80 (175)
T ss_dssp EEEECCHHHHHHHSCCCTTCEEEEC-----CCEEEEEESCHHHHHHHHHHHHTCCCEEEEEEEEEEC---
T ss_pred EEcCCCHHHHHHHHHHHhCCCEEeCCCCceEEEEEEcCCCHHHHHHHHHHHCCceEEEECCEEEEEchHH
Confidence 44555699999999999999998887544444555655 22 33333456774 35788999998765
Done!