BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>027229
MVGALSVVGSSVMDSHAGPCLCLDALPTSVKGGGELVLRRNSSVKRKKVKVAARSLELGS
SFVDSWDDWRLSSKVISNMVNRSSRKRKQRRDRRPVIVNEVGGQYEDSFEDVKKQIQNYF
TYKAVRTVLHQLYEMNPTQYMWFYNFVATNKPGDGKHFIRILGKEKQDLAERVMITRLHL
YGKWVKKCDHAQMYKAISDENLELMRERLIETVIWPSDDSNTEKIG

High Scoring Gene Products

Symbol, full name Information P value
RbcX2
AT5G19855
protein from Arabidopsis thaliana 3.4e-54
RbcX1
AT4G04330
protein from Arabidopsis thaliana 1.2e-08

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  027229
        (226 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:505006621 - symbol:RbcX2 "AT5G19855" species:3...   560  3.4e-54   1
TAIR|locus:2134877 - symbol:RbcX1 "AT4G04330" species:370...   130  1.2e-08   1


>TAIR|locus:505006621 [details] [associations]
            symbol:RbcX2 "AT5G19855" species:3702 "Arabidopsis
            thaliana" [GO:0009570 "chloroplast stroma" evidence=IDA]
            [GO:0044183 "protein binding involved in protein folding"
            evidence=IDA] [GO:0061077 "chaperone-mediated protein folding"
            evidence=IDA] EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0009570
            GO:GO:0044183 GO:GO:0061077 EMBL:AY088169 EMBL:BT004014
            EMBL:BT005149 IPI:IPI00527508 RefSeq:NP_568382.1 UniGene:At.31246
            ProteinModelPortal:Q8L9X2 SMR:Q8L9X2 STRING:Q8L9X2 PRIDE:Q8L9X2
            EnsemblPlants:AT5G19855.1 GeneID:832106 KEGG:ath:AT5G19855
            TAIR:At5g19855 eggNOG:NOG14198 HOGENOM:HOG000240504
            InParanoid:Q8L9X2 OMA:HIITNRP PhylomeDB:Q8L9X2
            ProtClustDB:CLSN2713656 ArrayExpress:Q8L9X2 Genevestigator:Q8L9X2
            InterPro:IPR003435 Pfam:PF02341 Uniprot:Q8L9X2
        Length = 203

 Score = 560 (202.2 bits), Expect = 3.4e-54, P = 3.4e-54
 Identities = 110/167 (65%), Positives = 128/167 (76%)

Query:    57 ELGSSFVDSWDDWRLSSKVISNMVNXXXXXXXXXXXXXPVIVNE-VGGQYEDSFEDVKKQ 115
             ELGSSF  S   +RLS K +S + N              +IVNE V G Y+D+F DV+KQ
Sbjct:    44 ELGSSFTGSRIVFRLSPKRVSRIANRKSKKL--------LIVNEDVAGNYDDTFGDVQKQ 95

Query:   116 IQNYFTYKAVRTVLHQLYEMNPTQYMWFYNFVATNKPGDGKHFIRILGKEKQDLAERVMI 175
             I NYFTYKAVRTVLHQLYEMNP QY WFYN + TN+P DGK F+R LGKE Q+LAERVMI
Sbjct:    96 IVNYFTYKAVRTVLHQLYEMNPPQYTWFYNHIITNRPTDGKRFLRALGKESQELAERVMI 155

Query:   176 TRLHLYGKWVKKCDHAQMYKAISDENLELMRERLIETVIWPSDDSNT 222
             TRLHLYGKW+KKCDH ++Y+ ISDENL LMRERL+ETVIWPSDD+N+
Sbjct:   156 TRLHLYGKWIKKCDHGKIYQEISDENLALMRERLMETVIWPSDDTNS 202


>TAIR|locus:2134877 [details] [associations]
            symbol:RbcX1 "AT4G04330" species:3702 "Arabidopsis
            thaliana" [GO:0009409 "response to cold" evidence=IEP] [GO:0009414
            "response to water deprivation" evidence=IEP] [GO:0009534
            "chloroplast thylakoid" evidence=IDA] [GO:0009651 "response to salt
            stress" evidence=IEP] [GO:0044183 "protein binding involved in
            protein folding" evidence=IDA] [GO:0061077 "chaperone-mediated
            protein folding" evidence=IDA] [GO:0009718 "anthocyanin-containing
            compound biosynthetic process" evidence=RCA] EMBL:CP002687
            GenomeReviews:CT486007_GR GO:GO:0009651 GO:GO:0009409 GO:GO:0009414
            GO:GO:0044183 GO:GO:0009534 GO:GO:0061077 UniGene:At.34032
            UniGene:At.63645 InterPro:IPR003435 Pfam:PF02341 EMBL:AY045782
            EMBL:AY142573 IPI:IPI00532545 RefSeq:NP_567263.1
            ProteinModelPortal:Q94AU9 SMR:Q94AU9 IntAct:Q94AU9 STRING:Q94AU9
            PaxDb:Q94AU9 PRIDE:Q94AU9 EnsemblPlants:AT4G04330.1 GeneID:825753
            KEGG:ath:AT4G04330 TAIR:At4g04330 eggNOG:NOG304941
            HOGENOM:HOG000242810 InParanoid:Q94AU9 OMA:KMYVPGF PhylomeDB:Q94AU9
            ProtClustDB:CLSN2689337 Genevestigator:Q94AU9 Uniprot:Q94AU9
        Length = 174

 Score = 130 (50.8 bits), Expect = 1.2e-08, P = 1.2e-08
 Identities = 37/104 (35%), Positives = 52/104 (50%)

Query:   114 KQIQNYFTYKAVRTVLHQLYEMNPTQYMWFYNFVATNKPGDGKHFIRILGKEKQ---DLA 170
             K + ++FTY AVR V  QL   NP  YM    F+ TN   DG  F   L +      +LA
Sbjct:    63 KHLHDFFTYVAVRIVSAQLESYNPEAYMELREFLDTNSVSDGDKFCATLMRRSSRHMNLA 122

Query:   171 ERVMITRLHLYGKWVKKCDHAQM--YKAISDENLELMRERLIET 212
              R++  R   Y K   + D+ +   +K + D N  LMRE ++ET
Sbjct:   123 LRILEVR-SAYCKNDFEWDNMKRLAFKNVDDSNTRLMREYVLET 165


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.135   0.411    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      226       193   0.00098  110 3  11 22  0.47    32
                                                     31  0.43    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  614 (65 KB)
  Total size of DFA:  185 KB (2106 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  15.63u 0.22s 15.85t   Elapsed:  00:00:01
  Total cpu time:  15.63u 0.22s 15.85t   Elapsed:  00:00:01
  Start:  Fri May 10 05:54:17 2013   End:  Fri May 10 05:54:18 2013

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