Query 027229
Match_columns 226
No_of_seqs 96 out of 98
Neff 3.5
Searched_HMMs 46136
Date Fri Mar 29 06:52:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027229.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027229hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF02341 RcbX: RbcX protein; 100.0 3.4E-45 7.4E-50 292.3 12.9 102 110-212 8-109 (111)
2 cd00131 PAX Paired Box domain 75.5 8 0.00017 31.2 5.5 77 98-174 5-99 (128)
3 smart00351 PAX Paired Box doma 62.3 14 0.00029 29.6 4.2 58 114-171 25-96 (125)
4 PF12112 DUF3579: Protein of u 61.5 2.5 5.3E-05 33.7 -0.2 24 130-153 63-86 (92)
5 COG4902 Uncharacterized protei 59.8 68 0.0015 28.3 8.2 83 133-223 27-111 (189)
6 PF11985 DUF3486: Protein of u 43.9 1.6E+02 0.0035 24.8 7.9 45 167-213 60-104 (180)
7 cd02518 GT2_SpsF SpsF is a gly 40.7 31 0.00067 29.0 3.2 29 123-151 196-225 (233)
8 PF12234 Rav1p_C: RAVE protein 40.1 64 0.0014 33.3 5.8 70 109-178 481-555 (631)
9 PF14842 FliG_N: FliG N-termin 36.9 1.3E+02 0.0029 23.4 6.0 65 111-175 21-96 (108)
10 smart00674 CENPB Putative DNA- 35.2 1.4E+02 0.003 20.5 5.3 17 137-153 47-63 (66)
11 TIGR01987 HI0074 nucleotidyltr 35.2 88 0.0019 25.5 4.9 64 106-175 35-105 (123)
12 TIGR02865 spore_II_E stage II 35.0 3.3E+02 0.0072 28.4 10.1 66 119-186 373-444 (764)
13 cd08330 CARD_ASC_NALP1 Caspase 34.7 57 0.0012 24.6 3.5 38 135-172 43-80 (82)
14 PF14677 FANCI_S3: FANCI solen 34.1 47 0.001 29.5 3.4 25 138-163 191-215 (219)
15 PF09280 XPC-binding: XPC-bind 33.5 72 0.0016 23.1 3.7 31 125-163 24-54 (59)
16 cd06258 Peptidase_M3_like The 30.2 1.3E+02 0.0028 27.3 5.7 60 122-182 7-66 (365)
17 PF03115 Astro_capsid: Astrovi 30.1 17 0.00037 38.3 0.0 52 1-75 147-198 (787)
18 PRK07417 arogenate dehydrogena 28.3 4.2E+02 0.009 23.4 8.9 100 109-213 170-271 (279)
19 PF02268 TFIIA_gamma_N: Transc 23.3 80 0.0017 22.4 2.4 18 159-176 19-39 (49)
20 KOG1937 Uncharacterized conser 22.5 3.4E+02 0.0073 27.7 7.3 62 113-175 248-311 (521)
21 KOG0774 Transcription factor P 21.9 5.9E+02 0.013 24.5 8.4 83 126-219 135-219 (334)
22 PF10436 BCDHK_Adom3: Mitochon 21.6 2.3E+02 0.005 23.8 5.2 57 141-198 67-135 (164)
23 smart00302 GED Dynamin GTPase 21.3 1.4E+02 0.0029 22.8 3.5 14 159-172 58-71 (92)
24 PF08740 BCS1_N: BCS1 N termin 20.8 1.4E+02 0.0031 24.5 3.8 20 136-155 34-53 (187)
25 PF01371 Trp_repressor: Trp re 20.4 51 0.0011 25.6 1.0 32 149-180 13-46 (87)
No 1
>PF02341 RcbX: RbcX protein; InterPro: IPR003435 The RbcX protein has been identified as having a possible chaperonin-like function []. The rbcX gene is juxtaposed to and cotranscribed with rbcL and rbcS encoding RubisCO in Anabaena sp. (strain CA / ATCC 33047). RbcX has been shown to possess a chaperonin-like function assisting correct folding of RubisCO in Escherichia coli expression studies and is needed for RubisCO to reach its maximal activity [].; PDB: 2PEM_B 2PEI_L 2PEK_A 2Z46_E 2Z44_A 2PEJ_F 2PEN_D 2PEQ_B 2Z45_A 3Q20_A ....
Probab=100.00 E-value=3.4e-45 Score=292.25 Aligned_cols=102 Identities=44% Similarity=0.703 Sum_probs=98.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCcchHHHHHhhhhcCCCCCHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhcc
Q 027229 110 EDVKKQIQNYFTYKAVRTVLHQLYEMNPTQYMWFYNFVATNKPGDGKHFIRILGKEKQDLAERVMITRLHLYGKWVKKCD 189 (226)
Q Consensus 110 ~DtAk~L~~yFTY~AVRtVL~QL~EtNP~~y~WL~~Fls~npl~DGD~fL~~LmrE~~eLAlRIMeVRehla~EW~~~l~ 189 (226)
.|||++|+|||||+||||||+||+|||||.|.||+||+++|||+|||+||++||+|+|+||+|||+||+|||+++.++|+
T Consensus 8 kdtak~L~~yfTy~Avr~Vl~QL~etnp~~~~wL~~F~~~~~~~DGd~fl~~L~~e~~~LA~RIM~vR~~la~~~~d~l~ 87 (111)
T PF02341_consen 8 KDTAKVLQSYFTYQAVRTVLAQLYETNPPAYIWLYNFLSRNPLQDGDAFLEALMRENQELALRIMEVREHLAEEVFDFLP 87 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHSTCSSHHHHHHHHHCC-HHHHHHHHHHHHHHHHHHGGGHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCccHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhH
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhh
Q 027229 190 HAQMYKAISDENLELMRERLIET 212 (226)
Q Consensus 190 ~~m~~~~I~e~N~elMRe~L~eT 212 (226)
+|++++|+++|+++||+||.+.
T Consensus 88 -em~~~~I~~~N~e~~R~~L~r~ 109 (111)
T PF02341_consen 88 -EMVREGIQQANMELMRQYLERM 109 (111)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999875
No 2
>cd00131 PAX Paired Box domain
Probab=75.47 E-value=8 Score=31.24 Aligned_cols=77 Identities=13% Similarity=0.050 Sum_probs=51.4
Q ss_pred ecCCCCCc--cc--chHHHHHHHHHHHHHHHHHHHHHHhhccCcchHHHHHhhhhcCCCCC--------------HHHHH
Q 027229 98 VNEVGGQY--ED--SFEDVKKQIQNYFTYKAVRTVLHQLYEMNPTQYMWFYNFVATNKPGD--------------GKHFI 159 (226)
Q Consensus 98 ~~~~GGq~--ed--~f~DtAk~L~~yFTY~AVRtVL~QL~EtNP~~y~WL~~Fls~npl~D--------------GD~fL 159 (226)
+|.+||.| +- +-+.=++++.-|-.=...+.+..+|.=.-+..+.|+..|-++..+.. -+.||
T Consensus 5 ~~~~~~~~~m~~~lS~d~R~rIv~~~~~G~s~~~iA~~~~Vs~~tV~r~i~r~~e~G~v~pk~~gg~rpr~~~~~~~~~i 84 (128)
T cd00131 5 VNQLGGVFVNGRPLPDSIRQRIVELAQSGIRPCDISRQLRVSHGCVSKILNRYYETGSIRPGAIGGSKPRVATPEVVKKI 84 (128)
T ss_pred ccCCCccccCCCcCCHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHcCCcCCCCCCCCCCCcCCHHHHHHH
Confidence 45577776 12 22344555555555556777777777777899999999997755421 35778
Q ss_pred HHHhccchhHHHHHH
Q 027229 160 RILGKEKQDLAERVM 174 (226)
Q Consensus 160 ~~LmrE~~eLAlRIM 174 (226)
.++.+++|++-++=|
T Consensus 85 ~~~v~~~p~~Tl~El 99 (128)
T cd00131 85 EIYKQENPGMFAWEI 99 (128)
T ss_pred HHHHHHCCCCCHHHH
Confidence 888888888755544
No 3
>smart00351 PAX Paired Box domain.
Probab=62.33 E-value=14 Score=29.61 Aligned_cols=58 Identities=10% Similarity=-0.038 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCcchHHHHHhhhhcCCCCC----H----------HHHHHHHhccchhHHH
Q 027229 114 KQIQNYFTYKAVRTVLHQLYEMNPTQYMWFYNFVATNKPGD----G----------KHFIRILGKEKQDLAE 171 (226)
Q Consensus 114 k~L~~yFTY~AVRtVL~QL~EtNP~~y~WL~~Fls~npl~D----G----------D~fL~~LmrE~~eLAl 171 (226)
+++.-|-.=...+.+..+|.=.-+..|.|+..|-++..+.. | +.||.++.+++|++-+
T Consensus 25 riv~~~~~G~s~~~iA~~~gvs~~tV~kwi~r~~~~G~~~pk~~gg~rp~~~~~~~~~~I~~~~~~~p~~t~ 96 (125)
T smart00351 25 RIVELAQNGVRPCDISRQLCVSHGCVSKILGRYYETGSIRPGAIGGSKPKVATPKVVKKIADYKQENPGIFA 96 (125)
T ss_pred HHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHcCCcCCcCCCCCCCCccCHHHHHHHHHHHHHCCCCCH
Confidence 33333333334566666666666789999999987755543 3 5577777777766533
No 4
>PF12112 DUF3579: Protein of unknown function (DUF3579); InterPro: IPR021969 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 98 to 126 amino acids in length. This protein has a conserved FRP sequence motif. ; PDB: 2L9D_A.
Probab=61.51 E-value=2.5 Score=33.65 Aligned_cols=24 Identities=21% Similarity=0.474 Sum_probs=20.8
Q ss_pred HHhhccCcchHHHHHhhhhcCCCC
Q 027229 130 HQLYEMNPTQYMWFYNFVATNKPG 153 (226)
Q Consensus 130 ~QL~EtNP~~y~WL~~Fls~npl~ 153 (226)
.+|++.||.+|..+++|...|.++
T Consensus 63 ~~L~~~~P~af~fvm~FA~dN~L~ 86 (92)
T PF12112_consen 63 ERLRDIEPMAFDFVMNFAKDNDLQ 86 (92)
T ss_dssp THHHHH-HHHHHHHHHHHHHHTEE
T ss_pred cHhhhcChHHHHHHHHHHHHCCCe
Confidence 578999999999999999999875
No 5
>COG4902 Uncharacterized protein conserved in archaea [Function unknown]
Probab=59.84 E-value=68 Score=28.31 Aligned_cols=83 Identities=23% Similarity=0.203 Sum_probs=63.4
Q ss_pred hccCcchHHHHHhhhhcCCCCCHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH--HHH
Q 027229 133 YEMNPTQYMWFYNFVATNKPGDGKHFIRILGKEKQDLAERVMITRLHLYGKWVKKCDHAQMYKAISDENLELMRE--RLI 210 (226)
Q Consensus 133 ~EtNP~~y~WL~~Fls~npl~DGD~fL~~LmrE~~eLAlRIMeVRehla~EW~~~l~~~m~~~~I~e~N~elMRe--~L~ 210 (226)
++||.|.-.-+-.-+...|+.|-+.=----|+|..-||.-| =..+|.+|. ++ +++.|+++--+||-. .|.
T Consensus 27 ~gt~~~s~~~~~~~l~~~plsdeE~nsLiyMrEEEKLARDV---YL~LYnkw~--l~---IF~nIA~SEQ~HmDAVk~Ll 98 (189)
T COG4902 27 EGTNSESTDTSGVTLQDSPLSDEEINSLIYMREEEKLARDV---YLYLYNKWN--LP---IFRNIAASEQEHMDAVKSLL 98 (189)
T ss_pred cCCCCCCccchhhcccCCCCChHHHhhHHHHHHHHHHHhhH---HhhhhhccC--cH---HHHHHHHhHHHHHHHHHHHH
Confidence 36887777667777778899988776666678888888754 456888997 45 889999999888864 677
Q ss_pred hhccCCCCCCCCC
Q 027229 211 ETVIWPSDDSNTE 223 (226)
Q Consensus 211 eT~~~psd~~n~~ 223 (226)
+-.+.|..+++++
T Consensus 99 ekYnv~dP~~~~s 111 (189)
T COG4902 99 EKYNVQDPASTTS 111 (189)
T ss_pred HHcCCCCCCccCc
Confidence 7788887777654
No 6
>PF11985 DUF3486: Protein of unknown function (DUF3486); InterPro: IPR021874 This entry is represented by Bacteriophage Mu, Gp27. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=43.91 E-value=1.6e+02 Score=24.77 Aligned_cols=45 Identities=13% Similarity=0.268 Sum_probs=36.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhc
Q 027229 167 QDLAERVMITRLHLYGKWVKKCDHAQMYKAISDENLELMRERLIETV 213 (226)
Q Consensus 167 ~eLAlRIMeVRehla~EW~~~l~~~m~~~~I~e~N~elMRe~L~eT~ 213 (226)
.+.+.++-+.|+ +++-|.+.+. ..--..+.+.++++++..+.+.+
T Consensus 60 ~~~~~~lr~are-~a~al~~~~~-~~~~~~~~~al~~~~~~~~f~~l 104 (180)
T PF11985_consen 60 EEVLERLREARE-IAEALAEELG-DEPEDDVTEALIEMLQTLLFEAL 104 (180)
T ss_pred HHHHHHHHHHHH-HHHHHHHHhc-CCCcchHHHHHHHHHHHHHHHHH
Confidence 578899999999 8898887765 22345888999999999998865
No 7
>cd02518 GT2_SpsF SpsF is a glycosyltrnasferase implicated in the synthesis of the spore coat. Spore coat polysaccharide biosynthesis protein F (spsF) is a glycosyltransferase implicated in the synthesis of the spore coat in a variety of bacteria challenged by stress as starvation. The spsF gene is expressed in the late stage of coat development responsible for a terminal step in coat formation that involves the glycosylation of the coat. SpsF gene mutation resulted in spores that appeared normal. But, the spores tended to aggregate and had abnormal adsorption properties, indicating a surface alteration.
Probab=40.72 E-value=31 Score=29.02 Aligned_cols=29 Identities=17% Similarity=0.361 Sum_probs=22.1
Q ss_pred HHHHHHHHHhhccCcc-hHHHHHhhhhcCC
Q 027229 123 KAVRTVLHQLYEMNPT-QYMWFYNFVATNK 151 (226)
Q Consensus 123 ~AVRtVL~QL~EtNP~-~y~WL~~Fls~np 151 (226)
..++.+..+|++.|++ -+.|+.+|+++||
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~p 225 (233)
T cd02518 196 ELIKEIYEALYPKNPDFSLEDIIELLDKNP 225 (233)
T ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHhCh
Confidence 4446666778888876 6899999998887
No 8
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=40.05 E-value=64 Score=33.32 Aligned_cols=70 Identities=14% Similarity=0.160 Sum_probs=53.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhccC-cchHHHHH-hhhhcCCCCCHHHHHHHHhc---cchhHHHHHHHHHH
Q 027229 109 FEDVKKQIQNYFTYKAVRTVLHQLYEMN-PTQYMWFY-NFVATNKPGDGKHFIRILGK---EKQDLAERVMITRL 178 (226)
Q Consensus 109 f~DtAk~L~~yFTY~AVRtVL~QL~EtN-P~~y~WL~-~Fls~npl~DGD~fL~~Lmr---E~~eLAlRIMeVRe 178 (226)
..||..++.+++-=.-.-+++.-|+|-+ .|.+.+|. +++--.-+.+||.|++...- ++.+.|.|.+....
T Consensus 481 l~dAv~V~~~~l~D~qLAi~i~Rl~e~d~gp~~~~ll~~~vLp~a~~~~d~wl~s~~~W~L~~~~~ai~~Li~~~ 555 (631)
T PF12234_consen 481 LKDAVNVCLRQLNDPQLAIAIARLYEGDNGPVLKKLLEEHVLPEAIKEGDRWLASWAFWMLGDYDEAIRALISPP 555 (631)
T ss_pred HHHHHHHHHHHccChhHHHHHHHHHcCCCchHHHHHHHHhhhccccccCCHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 4689999999988888888888887754 66666655 56666667899999998754 56888888875543
No 9
>PF14842 FliG_N: FliG N-terminal domain; PDB: 3HJL_A 3AJC_A 3USY_B.
Probab=36.92 E-value=1.3e+02 Score=23.36 Aligned_cols=65 Identities=12% Similarity=0.286 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccC---c----chHHHHHh-hh-hcCCCCCHHHHHHHHhccc--hhHHHHHHH
Q 027229 111 DVKKQIQNYFTYKAVRTVLHQLYEMN---P----TQYMWFYN-FV-ATNKPGDGKHFIRILGKEK--QDLAERVMI 175 (226)
Q Consensus 111 DtAk~L~~yFTY~AVRtVL~QL~EtN---P----~~y~WL~~-Fl-s~npl~DGD~fL~~LmrE~--~eLAlRIMe 175 (226)
|+|..+..+|+-.-++-|...+..+. + .....|++ .. ....+..|..|++.|+... ++-|..||.
T Consensus 21 e~Aa~vlk~l~~~ei~~i~~~ma~l~~v~~~~~~~Vl~EF~~~~~~~~~~~~gg~~~~~~lL~~alg~~~a~~il~ 96 (108)
T PF14842_consen 21 EAAAEVLKHLDEEEIERISREMAKLGSVSPEEVEEVLEEFYDEIRAQGGIVSGGRDFARRLLEKALGEEKAKEILD 96 (108)
T ss_dssp HHHHHHHHHS-HHHHHHHHHHHHT-----HHHHHHHHHHHHHHHHHTT---S-HHHHHHH-HHHHS---HHHHH--
T ss_pred HHHHHHHccCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHccccccChHHHHHHHHHHHCCHHHHHHHHH
Confidence 55556666777777777765555444 3 23444444 22 3445578999999999764 777877774
No 10
>smart00674 CENPB Putative DNA-binding domain in centromere protein B, mouse jerky and transposases.
Probab=35.23 E-value=1.4e+02 Score=20.51 Aligned_cols=17 Identities=12% Similarity=0.212 Sum_probs=13.6
Q ss_pred cchHHHHHhhhhcCCCC
Q 027229 137 PTQYMWFYNFVATNKPG 153 (226)
Q Consensus 137 P~~y~WL~~Fls~npl~ 153 (226)
.....||.+|...+++.
T Consensus 47 ~~s~~Wl~rF~~Rh~~~ 63 (66)
T smart00674 47 KASNGWLTRFKKRHNIV 63 (66)
T ss_pred CCCHHHHHHHHHHcCCc
Confidence 46688999999888874
No 11
>TIGR01987 HI0074 nucleotidyltransferase substrate binding protein, HI0074 family. The member of this family from Haemophilus influenzae, HI0074, has been shown by crystal structure to resemble nucleotidyltransferase substrate binding proteins. It forms a complex with HI0073, encoded by the adjacent gene and containing a nucleotidyltransferase nucleotide binding domain (pfam01909).
Probab=35.15 E-value=88 Score=25.52 Aligned_cols=64 Identities=17% Similarity=0.207 Sum_probs=37.2
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHhhccCcchHHHHHhhhhcCCCCCHHHHHHHHhccc-------hhHHHHHHH
Q 027229 106 EDSFEDVKKQIQNYFTYKAVRTVLHQLYEMNPTQYMWFYNFVATNKPGDGKHFIRILGKEK-------QDLAERVMI 175 (226)
Q Consensus 106 ed~f~DtAk~L~~yFTY~AVRtVL~QL~EtNP~~y~WL~~Fls~npl~DGD~fL~~LmrE~-------~eLAlRIMe 175 (226)
|=+|+=+=|+|..||.|+.+. ..+.++|.- =+....+.+-|.||+.|++.|-..| .++|..|..
T Consensus 35 E~t~ELaWK~lK~~L~~~G~~-----~~~~~spr~-~ir~A~~~glI~d~~~W~~ml~~RN~tsHtYde~~a~~i~~ 105 (123)
T TIGR01987 35 EFTFELAWKLMKRYLAQEGIN-----DIGAYSPKD-VLKEAFRAGLIGDESLWIAMLDDRNITSHTYDQEKAREIYA 105 (123)
T ss_pred hhHHHHHHHHHHHHHHHcCCc-----ccccCCHHH-HHHHHHHcCCcCCHHHHHHHHHHhCcccccCCHHHHHHHHH
Confidence 445544456666666665431 101222221 1444555677799999999987765 556666653
No 12
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=34.96 E-value=3.3e+02 Score=28.40 Aligned_cols=66 Identities=14% Similarity=0.077 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHhhccCcchHHHHHhhhhcCCCCCHHHHHHHHhc------cchhHHHHHHHHHHHHHHHHHH
Q 027229 119 YFTYKAVRTVLHQLYEMNPTQYMWFYNFVATNKPGDGKHFIRILGK------EKQDLAERVMITRLHLYGKWVK 186 (226)
Q Consensus 119 yFTY~AVRtVL~QL~EtNP~~y~WL~~Fls~npl~DGD~fL~~Lmr------E~~eLAlRIMeVRehla~EW~~ 186 (226)
+-||++..-++.++++..... ..+-+.+..+= .-.++|++++-. .|...-.|+.|-|+-+++....
T Consensus 373 ~~Ty~~~~~l~~~~e~~~~~~-~~~p~~~~~~C-~r~~~~~~~~~~~~~~~~~n~~w~~rl~e~R~~va~Ql~~ 444 (764)
T TIGR02865 373 DYTYSAMEELIENLEEKKDPN-SKLPDEFERKC-IKRKELINTTEDILNNYIINEMWRKRLEEGRRLVAEQLKG 444 (764)
T ss_pred HHHHHHHHHHHHHHHhcCCch-hhhhHHHHHhC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 448999999999999977655 66666665333 345677776654 3677899999999977775443
No 13
>cd08330 CARD_ASC_NALP1 Caspase activation and recruitment domain found in Human ASC, NALP1, and similar proteins. Caspase activation and recruitment domain (CARD) similar to those found in human ASC (Apoptosis-associated speck-like protein containing a CARD) and NALP1 (CARD7, NLRP1). ASC, an adaptor molecule, and NALP1, a member of the Nod-like receptor (NLR) family, are involved in the assembly of the 'inflammasome', a multiprotein platform, which is responsible for caspase-1 activation and regulation of IL-1beta maturation. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effector Domain). They se
Probab=34.73 E-value=57 Score=24.56 Aligned_cols=38 Identities=24% Similarity=0.295 Sum_probs=32.2
Q ss_pred cCcchHHHHHhhhhcCCCCCHHHHHHHHhccchhHHHH
Q 027229 135 MNPTQYMWFYNFVATNKPGDGKHFIRILGKEKQDLAER 172 (226)
Q Consensus 135 tNP~~y~WL~~Fls~npl~DGD~fL~~LmrE~~eLAlR 172 (226)
|++..+.-|.+++.+-...-=+.|+.+|...+|.|+..
T Consensus 43 T~~~kar~Lld~l~~kG~~A~~~F~~~L~e~~p~L~~~ 80 (82)
T cd08330 43 TNQEKMRKLFSFVRSWGASCKDIFYQILREEEPYLVED 80 (82)
T ss_pred CcHHHHHHHHHHHHccCHHHHHHHHHHHHHhChHHHhH
Confidence 77888999999998877777789999997788998865
No 14
>PF14677 FANCI_S3: FANCI solenoid 3; PDB: 3S51_A 3S4Z_A 3S4W_A.
Probab=34.09 E-value=47 Score=29.46 Aligned_cols=25 Identities=24% Similarity=0.356 Sum_probs=16.7
Q ss_pred chHHHHHhhhhcCCCCCHHHHHHHHh
Q 027229 138 TQYMWFYNFVATNKPGDGKHFIRILG 163 (226)
Q Consensus 138 ~~y~WL~~Fls~npl~DGD~fL~~Lm 163 (226)
..|.|+.+|+.++++.|-. |+.+|+
T Consensus 191 q~~~W~~~~ck~~~l~d~~-~~k~ll 215 (219)
T PF14677_consen 191 QMLSWTLKFCKENSLEDSS-FCKGLL 215 (219)
T ss_dssp HHHHHHHHHHHS---S-HH-HHHHHH
T ss_pred HHHHHHHHHHHhcCCCcHH-HHHHHH
Confidence 6799999999999998754 666665
No 15
>PF09280 XPC-binding: XPC-binding domain; InterPro: IPR015360 Members of this entry adopt a structure consisting of four alpha helices, arranged in an array. They bind specifically and directly to the xeroderma pigmentosum group C protein (XPC) to initiate nucleotide excision repair []. ; GO: 0003684 damaged DNA binding, 0006289 nucleotide-excision repair, 0043161 proteasomal ubiquitin-dependent protein catabolic process; PDB: 1PVE_A 1QZE_A 1OQY_A 1TP4_A 1X3W_B 3ESW_B 2QSG_X 2QSF_X 1X3Z_B 2QSH_X ....
Probab=33.47 E-value=72 Score=23.10 Aligned_cols=31 Identities=26% Similarity=0.463 Sum_probs=17.9
Q ss_pred HHHHHHHhhccCcchHHHHHhhhhcCCCCCHHHHHHHHh
Q 027229 125 VRTVLHQLYEMNPTQYMWFYNFVATNKPGDGKHFIRILG 163 (226)
Q Consensus 125 VRtVL~QL~EtNP~~y~WL~~Fls~npl~DGD~fL~~Lm 163 (226)
+.-+|.||.++||..+....+ |=++|++-|.
T Consensus 24 L~~lLqql~~~nP~l~q~I~~--------n~e~Fl~ll~ 54 (59)
T PF09280_consen 24 LPPLLQQLGQSNPQLLQLIQQ--------NPEEFLRLLN 54 (59)
T ss_dssp HHHHHHHHHCCSHHHHHHHHH--------THHHHHHHHH
T ss_pred HHHHHHHHhccCHHHHHHHHH--------CHHHHHHHHc
Confidence 445667777777766655443 3355655543
No 16
>cd06258 Peptidase_M3_like The peptidase M3-like family, also called neurolysin-like family, is part of the "zincins" metallopeptidases, and includes M3, M2 and M32 families of metallopeptidases. The M3 family is subdivided into two subfamilies: the widespread M3A, which comprises a number of high-molecular mass endo- and exopeptidases from bacteria, archaea, protozoa, fungi, plants and animals, and the small M3B, whose members are enzymes primarily from bacteria. Well-known mammalian/eukaryotic M3A endopeptidases are the thimet oligopeptidase (TOP; endopeptidase 3.4.24.15), neurolysin (alias endopeptidase 3.4.24.16), and the mitochondrial intermediate peptidase. The first two are intracellular oligopeptidases, which act only on relatively short substrates of less than 20 amino acid residues, while the latter cleaves N-terminal octapeptides from proteins during their import into the mitochondria. The M3A subfamily also contains several bacterial endopeptidases, collectively called olig
Probab=30.21 E-value=1.3e+02 Score=27.29 Aligned_cols=60 Identities=13% Similarity=0.037 Sum_probs=48.5
Q ss_pred HHHHHHHHHHhhccCcchHHHHHhhhhcCCCCCHHHHHHHHhccchhHHHHHHHHHHHHHH
Q 027229 122 YKAVRTVLHQLYEMNPTQYMWFYNFVATNKPGDGKHFIRILGKEKQDLAERVMITRLHLYG 182 (226)
Q Consensus 122 Y~AVRtVL~QL~EtNP~~y~WL~~Fls~npl~DGD~fL~~LmrE~~eLAlRIMeVRehla~ 182 (226)
++-+|.-++|+-+++...-.||.++... .+.+=++|++.|-+.-+.++.++++.....+.
T Consensus 7 lv~lr~e~A~~lGy~~~~d~~l~~~~~~-~~e~v~~f~~~l~~~~~p~~~~~~~~l~~~~~ 66 (365)
T cd06258 7 LVSLRNQLARLLGYENFADYKLALQEAK-SPETVEGFFEELKRKLRPLLAKLREEISAAKQ 66 (365)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788899989977788888888876 78899999999988888888888887765543
No 17
>PF03115 Astro_capsid: Astrovirus capsid protein precursor; InterPro: IPR004337 The astrovirus genome is apparently organised with nonstructural proteins encoded at the 5' end and structural proteins at the 3' end []. Proteins in this family are encoded by astrovirus ORF2, one of the three astrovirus ORFs (1a, 1b, 2). The proteins contain a viral RNA-dependent RNA polymerase motif []. The 87kDa precursor polyprotein undergoes an intracellular cleavage to form a 79kDa protein. Subsequently, extracellular trypsin cleavage yields the three proteins forming the infectious virion [].; PDB: 3QSQ_A 3TS3_D.
Probab=30.15 E-value=17 Score=38.26 Aligned_cols=52 Identities=29% Similarity=0.328 Sum_probs=0.0
Q ss_pred CCcceeeeccccccCCCCceeeeccCCCcccCCcceEEeecccccchhheecccccccccccccccchhhhhhhh
Q 027229 1 MVGALSVVGSSVMDSHAGPCLCLDALPTSVKGGGELVLRRNSSVKRKKVKVAARSLELGSSFVDSWDDWRLSSKV 75 (226)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~a~p~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 75 (226)
|||+-.|.|+.+. -+|-..+.|+...-+ -.|+|||+-|.||- ...|++.+|-
T Consensus 147 lvG~saV~Gtv~r-----~sln~~~~p~~tsws--------~lgARkH~dv~~G~----------~~~~~l~~r~ 198 (787)
T PF03115_consen 147 LVGASAVSGTVVR-----VSLNLTGTPSSTSWS--------GLGARKHVDVPVGR----------PAVFKLTARD 198 (787)
T ss_dssp ---------------------------------------------------------------------------
T ss_pred ccCccccCceEEE-----EEecCCCCCCCCCcc--------ccCceeEEEEcCCC----------ceEEEECHHH
Confidence 7999999999864 345566777765433 47999999986664 2367765543
No 18
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=28.32 E-value=4.2e+02 Score=23.38 Aligned_cols=100 Identities=15% Similarity=0.127 Sum_probs=48.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhccCcchHHHHHhhhhcCCCCCHHHHHHHHhccchhHHHHHH-HHHHHHHHHHHHh
Q 027229 109 FEDVKKQIQNYFTYKAVRTVLHQLYEMNPTQYMWFYNFVATNKPGDGKHFIRILGKEKQDLAERVM-ITRLHLYGKWVKK 187 (226)
Q Consensus 109 f~DtAk~L~~yFTY~AVRtVL~QL~EtNP~~y~WL~~Fls~npl~DGD~fL~~LmrE~~eLAlRIM-eVRehla~EW~~~ 187 (226)
.+.+.+...++..|.|.-.+...+.+.++..-.....|.. .-.+| +..+...+|+|=.-|+ ..|+.+.+..++|
T Consensus 170 hD~~~a~~shlp~~~a~~l~~~~~~~~~~~~~~~~~~~~~-~gfrd----~tRia~~~p~~w~~i~~~N~~~i~~~l~~~ 244 (279)
T PRK07417 170 HDRAVALISHLPVMVSAALIQTCGTEKDPSVLKLAQNLAS-SGFAD----TSRVGGGNPELGVMMAEYNRAALLRSLASY 244 (279)
T ss_pred HHHHHHHHcchHHHHHHHHHHHHhhcccchhhHHhhhhcc-Ccccc----cccccCCChHHHHHHHHHhHHHHHHHHHHH
Confidence 3455555555666666555444444334332222233443 44554 2333344565544443 4455444433322
Q ss_pred cc-hHHHHHHHHHHHHHHHHHHHHhhc
Q 027229 188 CD-HAQMYKAISDENLELMRERLIETV 213 (226)
Q Consensus 188 l~-~~m~~~~I~e~N~elMRe~L~eT~ 213 (226)
.. =..+++.|+++|-+-+++.+.++-
T Consensus 245 ~~~l~~~~~~l~~~d~~~l~~~~~~~~ 271 (279)
T PRK07417 245 RQSLDQLEELIEQENWSALEQKLEQTQ 271 (279)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 21 013666777777777777776643
No 19
>PF02268 TFIIA_gamma_N: Transcription initiation factor IIA, gamma subunit, helical domain; InterPro: IPR015872 Transcription factor IIA (TFIIA) is one of several factors that form part of a transcription pre-initiation complex along with RNA polymerase II, the TATA-box-binding protein (TBP) and TBP-associated factors, on the TATA-box sequence upstream of the initiation start site. After initiation, some components of the pre-initiation complex (including TFIIA) remain attached and re-initiate a subsequent round of transcription. TFIIA binds to TBP to stabilise TBP binding to the TATA element. TFIIA also inhibits the cytokine HMGB1 (high mobility group 1 protein) binding to TBP [], and can dissociate HMGB1 already bound to TBP/TATA-box. Human and Drosophila TFIIA have three subunits: two large subunits, LN/alpha and LC/beta, derived from the same gene, and a small subunit, S/gamma. Yeast TFIIA has two subunits: a large TOA1 subunit that shows sequence similarity to the N-terminal of LN/alpha and the C-terminal of LC/beta, and a small subunit, TOA2 that is highly homologous with S/gamma. The conserved regions of the large and small subunits of TFIIA combine to form two domains: a four-helix bundle (helical domain) composed of two helices from each of the N-terminal regions of TOA1 and TOA2 in yeast; and a beta-barrel (beta-barrel domain) composed of beta-sheets from the C-terminal regions of TOA1 and TOA2 []. This entry represents the alpha-helical domain found at the N-terminal of the gamma subunit of transcription factor TFIIA.; GO: 0006367 transcription initiation from RNA polymerase II promoter, 0005672 transcription factor TFIIA complex; PDB: 1NVP_D 1RM1_B 1YTF_D 1NH2_D.
Probab=23.25 E-value=80 Score=22.44 Aligned_cols=18 Identities=28% Similarity=0.294 Sum_probs=12.8
Q ss_pred HHHHhcc---chhHHHHHHHH
Q 027229 159 IRILGKE---KQDLAERVMIT 176 (226)
Q Consensus 159 L~~LmrE---~~eLAlRIMeV 176 (226)
|.+|..+ +|+||++||..
T Consensus 19 LDeli~~~~I~p~La~kVL~~ 39 (49)
T PF02268_consen 19 LDELIQEGKITPQLAMKVLEQ 39 (49)
T ss_dssp HHHHHHTTSS-HHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHH
Confidence 4556665 49999999964
No 20
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.54 E-value=3.4e+02 Score=27.73 Aligned_cols=62 Identities=18% Similarity=0.208 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCcch--HHHHHhhhhcCCCCCHHHHHHHHhccchhHHHHHHH
Q 027229 113 KKQIQNYFTYKAVRTVLHQLYEMNPTQ--YMWFYNFVATNKPGDGKHFIRILGKEKQDLAERVMI 175 (226)
Q Consensus 113 Ak~L~~yFTY~AVRtVL~QL~EtNP~~--y~WL~~Fls~npl~DGD~fL~~LmrE~~eLAlRIMe 175 (226)
|..=+..--|+|+.---.|+.+-|... ..-|..=+. .-+.||++||++|+..=.+++.+||+
T Consensus 248 ae~kqh~v~~~ales~~sq~~e~~selE~llklkerl~-e~l~dgeayLaKL~~~l~~~~~~~~~ 311 (521)
T KOG1937|consen 248 AEYKQHLVEYKALESKRSQFEEQNSELEKLLKLKERLI-EALDDGEAYLAKLMGKLAELNKQMEE 311 (521)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhHHHHH-HhcCChHhHHHHHHHHHHHHHHHHHH
Confidence 333344455666666667777777533 222333232 45689999999999876666666663
No 21
>KOG0774 consensus Transcription factor PBX and related HOX domain proteins [Transcription]
Probab=21.92 E-value=5.9e+02 Score=24.47 Aligned_cols=83 Identities=22% Similarity=0.253 Sum_probs=51.0
Q ss_pred HHHHHHhhccCcchHHHHHhhhhcCCCCCHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Q 027229 126 RTVLHQLYEMNPTQYMWFYNFVATNKPGDGKHFIRILGKEKQDLAERVMITRLHLYGKWVKKCDHAQMYKAISDENLELM 205 (226)
Q Consensus 126 RtVL~QL~EtNP~~y~WL~~Fls~npl~DGD~fL~~LmrE~~eLAlRIMeVRehla~EW~~~l~~~m~~~~I~e~N~elM 205 (226)
.-+|.+-+++.|-....+-+|+..- ..+|-.-=|.-+++.++-||..|..+...=. -+.+.++.-+|++
T Consensus 135 ~nlL~eQsr~RPi~~ke~e~m~~~i----~~kF~~iq~~lkqstce~vmiLr~r~ldarR-------KRRNFsK~aTeiL 203 (334)
T KOG0774|consen 135 MNLLREQSRTRPIMPKEIERMVQII----SKKFSHIQMQLKQSTCEAVMILRSRFLDARR-------KRRNFSKQATEIL 203 (334)
T ss_pred HHHHHHhcccCCCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hhcccchhHHHHH
Confidence 4455555556665555555554321 1234333344468899999999995544222 2346777888888
Q ss_pred HHHHHhhc--cCCCCC
Q 027229 206 RERLIETV--IWPSDD 219 (226)
Q Consensus 206 Re~L~eT~--~~psd~ 219 (226)
-+|.-.-. -.|||+
T Consensus 204 neyF~~h~~nPYPSee 219 (334)
T KOG0774|consen 204 NEYFYSHLSNPYPSEE 219 (334)
T ss_pred HHHHHHhcCCCCCcHH
Confidence 88887766 567765
No 22
>PF10436 BCDHK_Adom3: Mitochondrial branched-chain alpha-ketoacid dehydrogenase kinase; InterPro: IPR018955 Catabolism and synthesis of leucine, isoleucine and valine are finely balanced, allowing the body to make the most of dietary input but removing excesses to prevent toxic build-up of their corresponding keto-acids. Regulating the activity of the branched-chain alpha-ketoacid dehydrogenase (BCDH) complex is the primary means by which these processes are coordinated. BCDH kinase regulates BCDH by phosphorylation, thereby inactivating it when synthesis is required. Pyruvate dehydrogenase kinase inhibits the pyruvate dehydrogenase complex by phosphorylation of the E1 alpha subunit, thus contributing to the regulation of glucose metabolism. It is also involved in telomere maintenance. This entry is associated with IPR003594 from INTERPRO which is found towards the C terminus. ; PDB: 1GKX_A 1GJV_A 1GKZ_A 1JM6_B 3CRL_B 3CRK_B 1Y8O_A 2PNR_A 1Y8P_A 1Y8N_A ....
Probab=21.56 E-value=2.3e+02 Score=23.82 Aligned_cols=57 Identities=18% Similarity=0.144 Sum_probs=36.4
Q ss_pred HHHHhhhhcCCCCCHHHHHHHHhcc---c----hhHHHHHHHHHHHH----H-HHHHHhcchHHHHHHHH
Q 027229 141 MWFYNFVATNKPGDGKHFIRILGKE---K----QDLAERVMITRLHL----Y-GKWVKKCDHAQMYKAIS 198 (226)
Q Consensus 141 ~WL~~Fls~npl~DGD~fL~~LmrE---~----~eLAlRIMeVRehl----a-~EW~~~l~~~m~~~~I~ 198 (226)
.-|.+|-.-....|-++|.+.|-+- . +.||.=++|.+.+. . ++...||+ ++....|.
T Consensus 67 ~~L~~~~~~~~~~~~~~F~~~l~~i~~~H~~vv~~lA~G~~E~~~~~~~~~~~~~i~~fLd-~f~~sRIg 135 (164)
T PF10436_consen 67 EELRSFPPPKTLEDNEKFTELLERILDRHSDVVPTLAQGVLELKKYLQSSESEEQIQSFLD-RFYRSRIG 135 (164)
T ss_dssp HHHHTTSTTTSCCHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHC--HHHHHHHHHHHH-HHHHHHHH
T ss_pred HHHHhcCCCCCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcccccHHHHHHHHH-HHHHHhHH
Confidence 3345554444445788888766542 1 77999999999965 2 36666776 55555543
No 23
>smart00302 GED Dynamin GTPase effector domain.
Probab=21.31 E-value=1.4e+02 Score=22.79 Aligned_cols=14 Identities=21% Similarity=0.366 Sum_probs=11.6
Q ss_pred HHHHhccchhHHHH
Q 027229 159 IRILGKEKQDLAER 172 (226)
Q Consensus 159 L~~LmrE~~eLAlR 172 (226)
+..|+.|+|++|.|
T Consensus 58 ~~~LL~E~~~i~~k 71 (92)
T smart00302 58 LDELLEEDPEIASK 71 (92)
T ss_pred HHHHHcCCHHHHHH
Confidence 78899999987765
No 24
>PF08740 BCS1_N: BCS1 N terminal; InterPro: IPR014851 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. This domain is found at the N terminus of the mitochondrial BSC1 subfamily, belonging to the AAA ATPase family. At2g21640 and BCS1 are both highly stress responsive genes which encode mitochondrial proteins. The promoter of BCS1 was not responsive to H2O2 or rotenone, but highly responsive to salicylic acid (SA). The SA dependent pathway represented by BCS1 is one of at least three distinctive pathways to regulate mitochondrial stress response at a transcriptional level []. The BCS1 product is a mitochondrial protein required for the assembly of respiratory complex III []. BCS1, a component of the inner membrane of mitochondria, belongs to the group of proteins with internal, noncleavable import signals. It has a transmembrane domain (amino acid residues 51 to 68), a presequence type helix (residues 69 to 83), and an import auxiliary region (residues 84 to 126) [].
Probab=20.85 E-value=1.4e+02 Score=24.46 Aligned_cols=20 Identities=10% Similarity=0.443 Sum_probs=16.8
Q ss_pred CcchHHHHHhhhhcCCCCCH
Q 027229 136 NPTQYMWFYNFVATNKPGDG 155 (226)
Q Consensus 136 NP~~y~WL~~Fls~npl~DG 155 (226)
+-++|.||+.+++++|....
T Consensus 34 ~D~~Y~~lm~Wls~q~~~~~ 53 (187)
T PF08740_consen 34 DDEAYDWLMRWLSSQPFSKR 53 (187)
T ss_pred CCHHHHHHHHHHhhCCcccc
Confidence 44799999999999998653
No 25
>PF01371 Trp_repressor: Trp repressor protein; InterPro: IPR000831 The Trp repressor (TrpR) binds to at least five operators in the Escherichia coli genome, repressing gene expression. The operators at which it binds vary considerably in DNA sequence and location within the promoter; when bound to the Trp operon it recognises the sequence 5'-ACTAGT-3' and acts to prevent the initiation of transcription. The TrpR controls the trpEDCBA (trpO) operon and the genes for trpR, aroH, mtr and aroL, which are involved in the biosynthesis and uptake of the amino acid tryptophan []. The repressor binds to the operators only in the presence of L-tryptophan, thereby controlling the intracellular level of its effector; the complex also regulates Trp repressor biosynthesis by binding to its own regulatory region. TrpR acts as a dimer that is composed of identical 6-helical subunits, where four of the helices form the core of the protein and intertwine with the corresponding helices from the other subunit.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3FRW_H 3KOR_A 3SSW_N 1P6Z_N 1CO0_B 1JHG_A 1WRT_S 1WRS_R 1WRP_R 1RCS_B ....
Probab=20.45 E-value=51 Score=25.65 Aligned_cols=32 Identities=22% Similarity=0.233 Sum_probs=24.2
Q ss_pred cCCCCCHHHHHHHHhc--cchhHHHHHHHHHHHH
Q 027229 149 TNKPGDGKHFIRILGK--EKQDLAERVMITRLHL 180 (226)
Q Consensus 149 ~npl~DGD~fL~~Lmr--E~~eLAlRIMeVRehl 180 (226)
-....+-..|++.|+. |-.++|.|+-.+++-+
T Consensus 13 l~~~ee~~~f~~dL~T~~E~~~l~~R~~va~~lL 46 (87)
T PF01371_consen 13 LKDEEECYDFFEDLCTPDELEALAQRWQVAKELL 46 (87)
T ss_dssp HHCHHCHHHHHHHHSSHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 3445567788888886 5689999999999624
Done!