BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 027230
         (226 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1OXW|A Chain A, The Crystal Structure Of Semet Patatin
 pdb|1OXW|B Chain B, The Crystal Structure Of Semet Patatin
 pdb|1OXW|C Chain C, The Crystal Structure Of Semet Patatin
          Length = 373

 Score =  162 bits (411), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 98/219 (44%), Positives = 139/219 (63%), Gaps = 20/219 (9%)

Query: 9   GKKITVLSIDGGGVKGIIPGTILAFLESRLQDLDG-PNARIADYFDIVAGTSTGGLIGTM 67
           G+ +TVLSIDGGG++GIIP TIL FLE +LQ+ D   +AR+ADYFD++ GTSTGGL+   
Sbjct: 13  GEXVTVLSIDGGGIRGIIPATILEFLEGQLQEXDNNADARLADYFDVIGGTSTGGLLTAX 72

Query: 68  LTAPNKDGRPMYAAKDINNFYFEHCPKIFPQLSRGGNFLRSIISSLSKWVRPMYDGKYIR 127
           ++ PN++ RP  AAK+I  FYFEH P+IF   +  G  L            P YDGKY+ 
Sbjct: 73  ISTPNENNRPFAAAKEIVPFYFEHGPQIF---NPSGQIL-----------GPKYDGKYLX 118

Query: 128 SLTKEILEDITIKDTLTNLIIPTFDIKRLQPVIFSSNDALQVKKGALKNARLADICVGTS 187
            + +E L +  +   LT ++I +FDIK  +PVIF+ ++   +      +A+  DI   T+
Sbjct: 119 QVLQEKLGETRVHQALTEVVISSFDIKTNKPVIFTKSN---LANSPELDAKXYDISYSTA 175

Query: 188 AAPTYLPAHHFVTKDSTTGDTCSFDLIDGGVAA-NDPVI 225
           AAPTY P H+FVT +++ GD   F+L+DG VA   DP +
Sbjct: 176 AAPTYFPPHYFVT-NTSNGDEYEFNLVDGAVATVADPAL 213


>pdb|1FNY|A Chain A, Legume Lectin Of The Bark Of Robinia Pseudoacacia.
 pdb|1FNZ|A Chain A, A Bark Lectin From Robinia Pseudoacacia In Complex With N-
           Acetylgalactosamine
          Length = 237

 Score = 28.1 bits (61), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 17/55 (30%), Positives = 25/55 (45%)

Query: 157 QPVIFSSNDALQVKKGALKNARLADICVGTSAAPTYLPAHHFVTKDSTTGDTCSF 211
           QP + +  DAL    G L+   + +    + +    L A  F   DSTTG+  SF
Sbjct: 15  QPYLINQGDALVTSTGVLQLTNVVNGVPSSKSLGRALYAAPFQIWDSTTGNVASF 69


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.139    0.409 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,950,125
Number of Sequences: 62578
Number of extensions: 283687
Number of successful extensions: 752
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 746
Number of HSP's gapped (non-prelim): 4
length of query: 226
length of database: 14,973,337
effective HSP length: 95
effective length of query: 131
effective length of database: 9,028,427
effective search space: 1182723937
effective search space used: 1182723937
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)