Citrus Sinensis ID: 027232

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220------
Protein Sequence
MEENDCDSWEKASDNEDSYVDEIDEEDYYMSGFISKLQFRKDISKAHWNNELGMAEVVEKKGKMWTTTGIVRNGKTYCSIEETLFLAEIGALYLLDNNDLCLPLKEIYEKIANEKSGCSWELFEVYRHLKSLGYIVGRHGVPWIVKIPKGRDINITSDPVSLQVTPKRHGVMDVEPKEESSLVALFYNIQINEVRPVFDVYLPNRKFKKSCPGDPSFLLYLTCKYV
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccHHHHHHcccccccEEEccEEEEEEEcccccEEEEccccccEEEEEEEEccEEEEEHHHHHHHHHcccEEEEccccccccHHHHHHHHHccccccccHHHHHHHHHccccEEEEEccccccccccccccccccccccccccccccccccccccccccHHHHHHHcccccccccEEEEEcccccccccccccccEEEEEEcccc
Secondary Structure Prediction (SSPRO)
ccHHcccccccccccHHccccccccHHHHccccccHEEEccccEEEEEcHHcccEEEEcccccEEEEEcEEccccEEEcHHHHHHHHHHccEEEEccccccEcHHHHHHHHHcccccccHHHHHHHHHHHHccEEEEEcccccccccccccccccccccccHcccHHHccccccccccccHHHHHHHHccccccccEEEEEcccccccccccccccEEEEEEEEcc
Coil and Loop (DISEMBL)
meendcdswekasdnedsyvdeideedyymsgfISKLQFRKDISKAHWNNELGMAEVVEKKgkmwtttgivrngktycsIEETLFLAEIGALylldnndlclpLKEIYEKIANEKSGCSWELFEVYRHLKSLGYIvgrhgvpwivkipkgrdinitsdpvslqvtpkrhgvmdvepkeESSLVALFYNIqinevrpvfdvylpnrkfkkscpgdpsfllyltckyv
Flexible Loop (DISEMBL)
meendcdswekasdnedsyvdEIDEEDYYMSGFISKLQFRKDISKAHWNNELGMAEVVEkkgkmwtttgivrngktYCSIEETLFLAEIGALYLLDNNDLCLPLKEIYEKIANEKSGCSWELFEVYRHLKSLGYIVGRHGVPWIVKIpkgrdinitsdpvslqvtpkrhgVMDVEPKEESSLVALFYNIQINEVRPVFDVYLPNRkfkkscpgdpsfllyltckyv
Low Complexity Region (SEG)
MEENDCDSWEKASDNEDSYVDEIDEEDYYMSGFISKLQFRKDISKAHWNNELGMAEVVEKKGKMWTTTGIVRNGKTYCSIEETLFLAEIGALYLLDNNDLCLPLKEIYEKIANEKSGCSWELFEVYRHLKSLGYIVGRHGVPWIVKIPKGRDINITSDPVSLQVTPKRHGVMDVEPKEESSLVALFYNIQINEVRPVFDVYLPNRKFKKSCPGDPSFLLYLTCKYV
Disordered region (IsUnstruct)
*********************EIDEEDYYMSGFISKLQFRKDISKAHWNNELGMAEVVEKKGKMWTTTGIVRNGKTYCSIEETLFLAEIGALYLLDNNDLCLPLKEIYEKIANEKSGCSWELFEVYRHLKSLGYIVGRHGVPWIVKIPKGRDINITSDPVSL******************SLVALFYNIQINEVRPVFDVYLPNRKFKKSCPGDPSFLLYLTCKY*
Disordered Region (DISOPRED)
******************************************ISKAHWNNELGMAEVVEKKGKMWTTTGIVRNGKTYCSIEETLFLAEIGALYLLDNNDLCLPLKEIYEKIANEKSGCSWELFEVYRHLKSLGYIVGRHGVP*********************************P*****L*ALFYNIQINEVRPVFDVYLPNRKFKK*CPGDPSFLLYLTCKYV
Disordered Region (DISEMBL)
**************NEDSYVDEIDEEDYYMSGFISKLQFRKDISKAHWNNELGMAEVVEKKGKMWTTTGIVRNGKTYCSIEETLFLAEIGALYLLDNNDLCLPLKEIYEKIANEKSGCSWELFEVYRHLKSLGYIVGRHGVPWIVKIPKGRDINITSDPVSLQVTPKRHGVMDVEPKEESSLVALFYNIQINEVRPVFDVYLPNRKFKKSCPGDPSFLLYLTCKYV
Disordered Region (DISPRO)
*****************S****IDE****MSGFISKLQFRKDISKAHWNNELGMAEVVEKKGKMWTTTGIVRNGKTYCSIEETLFLAEIGALYLLDNNDLCLPLKEIYEKIANEKSGCSWELFEVYRHLKSLGYIVGRHGVPWIVK*******************************EESSLVALFYNIQINEVRPVFDVYLPNRKFKKSCPGDPSFLLYLTCKYV
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEENDCDSWEKASDNEDSYVDEIDEEDYYMSGFISKLQFRKDISKAHWNNELGMAEVVEKKGKMWTTTGIVRNGKTYCSIEETLFLAEIGALYLLDNNDLCLPLKEIYEKIANEKSGCSWELFEVYRHLKSLGYIVGRHGVPWIVKIPKGRDINITSDPVSLQVTPKRHGVMDVEPKEESSLVALFYNIQINEVRPVFDVYLPNRKFKKSCPGDPSFLLYLTCKYV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	226	2.2.26 [Sep-21-2011]
Q8C2A2	525	tRNA-splicing endonucleas	yes	no	0.473	0.203	0.345	3e-10
Q7Z6J9	526	tRNA-splicing endonucleas	yes	no	0.482	0.207	0.330	3e-10
Q74ZJ5	455	tRNA-splicing endonucleas	yes	no	0.411	0.204	0.299	0.0003

>sp|Q8C2A2|SEN54_MOUSE tRNA-splicing endonuclease subunit Sen54 OS=Mus musculus GN=Tsen54 PE=2 SV=2

 Score = 65.9 bits (159), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 38/110 (34%), Positives = 57/110 (51%), Gaps = 3/110 (2%)

Query: 46  AHWNNELGMAEVVEKKGKMWTTTGIVRNGKTYCSIEETLFLAEIGALYLLDNNDLCLPLK 105
           A W  E G  E+    GK W T G    G+     EE L+L E G++ L    DL L ++
Sbjct: 80  AEWKPEEGFVELTSPAGKFWQTMGYSEEGRQRLHPEEALYLLECGSIQLF-YQDLPLSIQ 138

Query: 106 EIYEKIANEKSGCSWELFEVYRHLKSLGYIVGRHGVPWIVKIPKGRDINI 155
           E Y+ +  E +  S+  ++V+ HLK LGY+V R  +  +V  P  R +N+
Sbjct: 139 EAYQLLLTEDT-LSFLQYQVFSHLKRLGYVVRRFQLSSVVS-PYERQLNL 186

Non-catalytic subunit of the tRNA-splicing endonuclease complex, a complex responsible for identification and cleavage of the splice sites in pre-tRNA. It cleaves pre-tRNA at the 5' and 3' splice sites to release the intron. The products are an intron and two tRNA half-molecules bearing 2',3' cyclic phosphate and 5'-OH termini. There are no conserved sequences at the splice sites, but the intron is invariably located at the same site in the gene, placing the splice sites an invariant distance from the constant structural features of the tRNA body. The tRNA splicing endonuclease is also involved in mRNA processing via its association with pre-mRNA 3' end processing factors, establishing a link between pre-tRNA splicing and pre-mRNA 3' end formation, suggesting that the endonuclease subunits function in multiple RNA-processing events.
Mus musculus (taxid: 10090)

>sp|Q7Z6J9|SEN54_HUMAN tRNA-splicing endonuclease subunit Sen54 OS=Homo sapiens GN=TSEN54 PE=1 SV=3

 Score = 65.1 bits (157), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 37/112 (33%), Positives = 59/112 (52%), Gaps = 3/112 (2%)

Query: 46  AHWNNELGMAEVVEKKGKMWTTTGIVRNGKTYCSIEETLFLAEIGALYLLDNNDLCLPLK 105
           A W  E G  E+    GK W T G    G+     EE L+L E G+++L  + DL L ++
Sbjct: 80  AEWRPEEGFVELKSPAGKFWQTMGFSEQGRQRLHPEEALYLLECGSIHLF-HQDLPLSIQ 138

Query: 106 EIYEKIANEKSGCSWELFEVYRHLKSLGYIVGRHGVPWIVKIPKGRDINITS 157
           E Y+ +  + +  ++  ++V+ HLK LGY+V R   P  V  P  R +N+ +
Sbjct: 139 EAYQLLLTDHT-VTFLQYQVFSHLKRLGYVV-RRFQPSSVLSPYERQLNLDA 188

Non-catalytic subunit of the tRNA-splicing endonuclease complex, a complex responsible for identification and cleavage of the splice sites in pre-tRNA. It cleaves pre-tRNA at the 5' and 3' splice sites to release the intron. The products are an intron and two tRNA half-molecules bearing 2',3' cyclic phosphate and 5'-OH termini. There are no conserved sequences at the splice sites, but the intron is invariably located at the same site in the gene, placing the splice sites an invariant distance from the constant structural features of the tRNA body. The tRNA splicing endonuclease is also involved in mRNA processing via its association with pre-mRNA 3' end processing factors, establishing a link between pre-tRNA splicing and pre-mRNA 3' end formation, suggesting that the endonuclease subunits function in multiple RNA-processing events.

Homo sapiens (taxid: 9606)

>sp|Q74ZJ5|SEN54_ASHGO tRNA-splicing endonuclease subunit SEN54 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=SEN54 PE=3 SV=1

 Score = 45.4 bits (106), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/107 (29%), Positives = 54/107 (50%), Gaps = 14/107 (13%)

Query: 41  KDISKAHWNNELGMAEVVEKKGKMWTTTGIV-RNGKTYCSIEETLFLAEIGAL--YLL-- 95
           K + KA+W  E  MA +   +G    T G V ++G+ +  + E ++L E G +  YL   
Sbjct: 83  KTLIKAYWEEEQRMARIPNARGSFTNTMGKVDKHGQCWLQLHEFVYLVERGTVSPYLALT 142

Query: 96  ------DNNDLCLPLKEIYEKIANEKSGCSWELFEVYRHLKSLGYIV 136
                 ++ D+ L ++++Y   +   S    + F VY HLK LG+IV
Sbjct: 143 VGDEKSNHEDVLLSVQDVYALFS---STEELDEFLVYAHLKRLGFIV 186

Non-catalytic subunit of the tRNA-splicing endonuclease complex, a complex responsible for identification and cleavage of the splice sites in pre-tRNA. It cleaves pre-tRNA at the 5' and 3' splice sites to release the intron. The products are an intron and two tRNA half-molecules bearing 2',3' cyclic phosphate and 5'-OH termini. There are no conserved sequences at the splice sites, but the intron is invariably located at the same site in the gene, placing the splice sites an invariant distance from the constant structural features of the tRNA body. May be required to embody the molecular ruler of the complex.

Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) (taxid: 284811)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	226
224134699	283	predicted protein [Populus trichocarpa]	0.924	0.738	0.587	2e-66
147790314	1843	hypothetical protein VITISV_010199 [Viti	0.902	0.110	0.589	1e-61
297739626	281	unnamed protein product [Vitis vinifera]	0.902	0.725	0.594	1e-61
225441894	255	PREDICTED: uncharacterized protein LOC10	0.902	0.8	0.594	2e-61
255572755	261	conserved hypothetical protein [Ricinus	0.915	0.793	0.570	2e-59
449449845	267	PREDICTED: uncharacterized protein LOC10	0.933	0.790	0.511	1e-56
356503431	264	PREDICTED: uncharacterized protein LOC10	0.814	0.696	0.554	2e-53
356570446	272	PREDICTED: uncharacterized protein LOC10	0.951	0.790	0.513	1e-52
240255663	254	uncharacterized protein [Arabidopsis tha	0.880	0.783	0.495	1e-51
297817060	256	At3g57360 [Arabidopsis lyrata subsp. lyr	0.902	0.796	0.493	7e-50

>gi|224134699|ref|XP_002327468.1| predicted protein [Populus trichocarpa] gi|222836022|gb|EEE74443.1| predicted protein [Populus trichocarpa]

 Score =  258 bits (658), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 127/216 (58%), Positives = 162/216 (75%), Gaps = 7/216 (3%)

Query: 7   DSWEKASDNEDSYVDEIDEEDYY-MSGFISKLQFRKDISKAHWNNELGMAEVVEKKGKMW 65
           D WE +S  E +  D+ ++ED+Y  S  +SKLQFR D+SKA WN E+GMAEV+EKKGKMW
Sbjct: 5   DDWESSS-GEVTDTDQFNDEDFYSTSACLSKLQFRNDVSKAKWNVEMGMAEVIEKKGKMW 63

Query: 66  TTTGIVRNGKTYCSIEETLFLAEIGALYLLDNNDLCLPLKEIYEKIANEKSGCSWELFEV 125
            TTGIVRNGKT+C IEETLFLAEIGAL ++D+ND CL LK+I++K++ E++GCSWELFEV
Sbjct: 64  ITTGIVRNGKTFCLIEETLFLAEIGALLVMDDNDECLALKDIHKKMSEERNGCSWELFEV 123

Query: 126 YRHLKSLGYIVGRHGVPWIVKIPKGRDINITSDPVSLQVTPKRHGVMDVEPKEESSLVAL 185
           Y+HLKSLGY+VGRHGVPW +K      +   S P S Q T + + V  VE    +  V +
Sbjct: 124 YKHLKSLGYVVGRHGVPWSMK-----GVENNSKPCSSQGTIQNNRVEGVEENSITCAVQM 178

Query: 186 FYNIQINEVRPVFDVYLPNRKFKKSCPGDPSFLLYL 221
             N+Q++E+R  FDVYLPN KF+KS PGDP+FLL L
Sbjct: 179 LSNLQVDELRLNFDVYLPNSKFRKSSPGDPAFLLCL 214

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147790314|emb|CAN74373.1| hypothetical protein VITISV_010199 [Vitis vinifera]

 Score =  241 bits (616), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 125/212 (58%), Positives = 153/212 (72%), Gaps = 8/212 (3%)

Query: 12   ASDNEDSYVDEIDEED-YYMSGFISKLQFRKDISKAHWNNELGMAEVVEKKGKMWTTTGI 70
            ASD+E    D  DEE+ YY S  ISKLQFRKD+SKA WN+ + MAEVVE KGKMWTTTG+
Sbjct: 1034 ASDSEIYLQDANDEEEHYYTSSSISKLQFRKDVSKAIWNDAMRMAEVVEMKGKMWTTTGM 1093

Query: 71   VRNGKTYCSIEETLFLAEIGALYLLDNNDLCLPLKEIYEKIANEKSGCSWELFEVYRHLK 130
            + +GK YCSIEETLFLAE+GAL+LLD+ D+ + LK IY+K++  K GC WE FE YRHLK
Sbjct: 1094 LHSGKIYCSIEETLFLAELGALHLLDDXDVPISLKGIYDKVSQGKCGCCWESFEAYRHLK 1153

Query: 131  SLGYIVGRHGVPWIVKIPKGRDINITSDPVSLQVTPKRHGVMDVEPKEESSLVALFYNIQ 190
            SLGYIVGRHG+PW     KG    + S     Q TP+ +   D   +EE+S + L  N+ 
Sbjct: 1154 SLGYIVGRHGIPW---TSKGXKTCLDSH----QGTPEGNSRTDXGSEEENSTIELVNNMH 1206

Query: 191  INEVRPVFDVYLPNRKFKKSCPGDPSFLLYLT 222
            I EV+ +FDVYLPN KF+KS PGDPSF+L LT
Sbjct: 1207 ITEVKLLFDVYLPNSKFRKSSPGDPSFVLCLT 1238

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297739626|emb|CBI29808.3| unnamed protein product [Vitis vinifera]

 Score =  241 bits (615), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 126/212 (59%), Positives = 154/212 (72%), Gaps = 8/212 (3%)

Query: 12  ASDNEDSYVDEIDEED-YYMSGFISKLQFRKDISKAHWNNELGMAEVVEKKGKMWTTTGI 70
           ASD+E    D  DEE+ YY S  ISKLQFRKD+SKA WN+ + MAEVVE KGKMWTTTG+
Sbjct: 31  ASDSEIYLQDANDEEEHYYTSSSISKLQFRKDVSKAIWNDAMRMAEVVEMKGKMWTTTGM 90

Query: 71  VRNGKTYCSIEETLFLAEIGALYLLDNNDLCLPLKEIYEKIANEKSGCSWELFEVYRHLK 130
           + +GK YCSIEETLFLAE+GAL+LLD+ND+ + LK IY+K++  K GC WE FE YRHLK
Sbjct: 91  LHSGKIYCSIEETLFLAELGALHLLDDNDVPISLKGIYDKVSQGKCGCCWESFEAYRHLK 150

Query: 131 SLGYIVGRHGVPWIVKIPKGRDINITSDPVSLQVTPKRHGVMDVEPKEESSLVALFYNIQ 190
           SLGYIVGRHG+PW     KG    + S     Q TP+ +   D   +EE+S + L  N+ 
Sbjct: 151 SLGYIVGRHGIPW---TSKGAKTCLDSH----QGTPEGNSRTDEGSEEENSTIELVNNMH 203

Query: 191 INEVRPVFDVYLPNRKFKKSCPGDPSFLLYLT 222
           I EV+ +FDVYLPN KF+KS PGDPSF+L LT
Sbjct: 204 ITEVKLLFDVYLPNSKFRKSSPGDPSFVLCLT 235

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225441894|ref|XP_002284389.1| PREDICTED: uncharacterized protein LOC100257347 [Vitis vinifera]

 Score =  241 bits (615), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 126/212 (59%), Positives = 154/212 (72%), Gaps = 8/212 (3%)

Query: 12  ASDNEDSYVDEIDEED-YYMSGFISKLQFRKDISKAHWNNELGMAEVVEKKGKMWTTTGI 70
           ASD+E    D  DEE+ YY S  ISKLQFRKD+SKA WN+ + MAEVVE KGKMWTTTG+
Sbjct: 5   ASDSEIYLQDANDEEEHYYTSSSISKLQFRKDVSKAIWNDAMRMAEVVEMKGKMWTTTGM 64

Query: 71  VRNGKTYCSIEETLFLAEIGALYLLDNNDLCLPLKEIYEKIANEKSGCSWELFEVYRHLK 130
           + +GK YCSIEETLFLAE+GAL+LLD+ND+ + LK IY+K++  K GC WE FE YRHLK
Sbjct: 65  LHSGKIYCSIEETLFLAELGALHLLDDNDVPISLKGIYDKVSQGKCGCCWESFEAYRHLK 124

Query: 131 SLGYIVGRHGVPWIVKIPKGRDINITSDPVSLQVTPKRHGVMDVEPKEESSLVALFYNIQ 190
           SLGYIVGRHG+PW     KG    + S     Q TP+ +   D   +EE+S + L  N+ 
Sbjct: 125 SLGYIVGRHGIPW---TSKGAKTCLDSH----QGTPEGNSRTDEGSEEENSTIELVNNMH 177

Query: 191 INEVRPVFDVYLPNRKFKKSCPGDPSFLLYLT 222
           I EV+ +FDVYLPN KF+KS PGDPSF+L LT
Sbjct: 178 ITEVKLLFDVYLPNSKFRKSSPGDPSFVLCLT 209

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255572755|ref|XP_002527310.1| conserved hypothetical protein [Ricinus communis] gi|223533310|gb|EEF35062.1| conserved hypothetical protein [Ricinus communis]

 Score =  234 bits (598), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 125/219 (57%), Positives = 155/219 (70%), Gaps = 12/219 (5%)

Query: 7   DSWEKASD--NEDSYVDEI-DEEDYYMSGFISKLQFRKDISKAHWNNELGMAEVVEKKGK 63
           + WE +S   N+ + +  I DEE Y     + KLQFR DISKA WN E+GMAE+VEKKGK
Sbjct: 4   EDWETSSSELNDTTAIGAIKDEELYCTLESLPKLQFRSDISKARWNAEMGMAELVEKKGK 63

Query: 64  MWTTTGIVRNGKTYCSIEETLFLAEIGALYLLDNNDLCLPLKEIYEKIANEKSGCSWELF 123
           +WT TGI R+GKTYCSIEETLFLAE+GAL L+D+   CL LK++Y K+  +KSGC  ELF
Sbjct: 64  LWTNTGIARSGKTYCSIEETLFLAELGALVLMDDEGTCLSLKDLYGKMGYQKSGCCSELF 123

Query: 124 EVYRHLKSLGYIVGRHGVPWIVKIPKGRDINITSDPVSLQVTPKRHG-VMDVEPKEESSL 182
           EVYRHLKSLGYIVGRHGVPW +   KG      SD      T + +G V+D E KE +S+
Sbjct: 124 EVYRHLKSLGYIVGRHGVPWSM---KGVKSTCQSDS-----THENNGVVIDNEVKETASI 175

Query: 183 VALFYNIQINEVRPVFDVYLPNRKFKKSCPGDPSFLLYL 221
           V    N+Q++E+R  FDVYLPN KF+KS PG+P+F L L
Sbjct: 176 VQRLRNLQVDELRLDFDVYLPNSKFRKSSPGEPAFFLCL 214

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449449845|ref|XP_004142675.1| PREDICTED: uncharacterized protein LOC101210680 [Cucumis sativus] gi|449525862|ref|XP_004169935.1| PREDICTED: uncharacterized LOC101210680 [Cucumis sativus]

 Score =  225 bits (574), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 116/227 (51%), Positives = 160/227 (70%), Gaps = 16/227 (7%)

Query: 8   SWEKASD------NEDSYVDEIDEEDYYMS--GFISKLQFRKDISKAHWNNELGMAEVVE 59
           +WE +S       +ED+Y  +I++E+  +S  G + KLQFRK  S A WN+++GMAEV+E
Sbjct: 5   NWESSSGGASDTGDEDNYEQDINDEEECLSASGCLRKLQFRKHASTARWNDQMGMAEVLE 64

Query: 60  KKGKMWTTTGIVRNGKTYCSIEETLFLAEIGALYLLDNNDLCLPLKEIYEKIANEKSGCS 119
            KG +WTTTGIVR GK YCSIEETLFL E+GAL+LLD+++  L LK++Y+K+A  +SG  
Sbjct: 65  NKGSLWTTTGIVRCGKIYCSIEETLFLIEVGALHLLDHDNSSLSLKDVYKKVAEGRSGRL 124

Query: 120 WELFEVYRHLKSLGYIVGRHGVPWIVKIPKGRDINITSD-PVSLQVTPKRHGVMDVEPKE 178
           WE FEVYRHLKSLGYIVG+H VPW +K       N+ +D  +S   + +  G  DV+  +
Sbjct: 125 WEQFEVYRHLKSLGYIVGKHRVPWSLK-------NVRNDCDISSPSSTENKGASDVKSDD 177

Query: 179 ESSLVALFYNIQINEVRPVFDVYLPNRKFKKSCPGDPSFLLYLTCKY 225
           E S+  L   IQ++EV P+FDV+LP+ KF+KS PGDP+F++ LT  Y
Sbjct: 178 EQSICRLLNAIQLDEVTPIFDVFLPHNKFRKSSPGDPNFMVCLTRGY 224

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356503431|ref|XP_003520512.1| PREDICTED: uncharacterized protein LOC100811412 [Glycine max]

 Score =  214 bits (545), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 106/191 (55%), Positives = 138/191 (72%), Gaps = 7/191 (3%)

Query: 34  ISKLQFRKDISKAHWNNELGMAEVVEKKGKMWTTTGIVRNGKTYCSIEETLFLAEIGALY 93
           + KLQFR   SK  WN E+GM +++EK GKMW TTGIVR+GK Y SIEETL+L E+GAL 
Sbjct: 4   MPKLQFRNVKSKGCWNEEVGMGDIIEKNGKMWVTTGIVRSGKIYSSIEETLYLMELGALD 63

Query: 94  LLDNNDLCLPLKEIYEKIANEKSGCSWELFEVYRHLKSLGYIVGRHGVPWIVKIPKGRDI 153
           LLDN    + L E YEK+A+ KSGC WELF+VYRHLKS+GYI+GRHGV W +K      I
Sbjct: 64  LLDNGGRSISLTETYEKVASGKSGCCWELFDVYRHLKSIGYIIGRHGVAWSLK-----SI 118

Query: 154 NITSDPVSLQVTPKRHGVMDVEPKEESSL--VALFYNIQINEVRPVFDVYLPNRKFKKSC 211
            +  + + L+   +   + D++ K E S+  + LF  +Q+N++RP FDVYLPN +F+KSC
Sbjct: 119 KVPINLLLLKSQKEIEQLEDIDSKSELSINELWLFGEMQVNDLRPDFDVYLPNSRFRKSC 178

Query: 212 PGDPSFLLYLT 222
           PGDPSFLLYL+
Sbjct: 179 PGDPSFLLYLS 189

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356570446|ref|XP_003553398.1| PREDICTED: uncharacterized protein LOC100782940 [Glycine max]

 Score =  212 bits (539), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 114/222 (51%), Positives = 145/222 (65%), Gaps = 7/222 (3%)

Query: 6   CDSWEKASDNEDSYVDEIDEEDYY--MSGFISKLQFRKDISKAHWNNELGMAEVVEKKGK 63
           C S E + D  + Y+    +ED     SG + KLQFR   SK  WN E+GM EV+EK GK
Sbjct: 8   CSSSEDSDD--EVYLQNASDEDELGSSSGSMPKLQFRNMKSKGCWNEEMGMGEVIEKNGK 65

Query: 64  MWTTTGIVRNGKTYCSIEETLFLAEIGALYLLDNNDLCLPLKEIYEKIANEKSGCSWELF 123
           MW TTGIVR+GK Y SIEETL+L E+GAL+L+DN    + L E+YEK+A+ KSGC WELF
Sbjct: 66  MWVTTGIVRSGKIYSSIEETLYLMELGALHLVDNGGRSISLTEMYEKVASGKSGCCWELF 125

Query: 124 EVYRHLKSLGYIVGRHGVPWIVK--IPKGRDINITSDPVSLQVTPKRHGVMDVEPKEESS 181
           EVYRHLKSLGYI+G HGV W +K  I + +  +   D      +      +    +   S
Sbjct: 126 EVYRHLKSLGYIIGCHGVAWSLKKIIGEHKKSHRQHDFAHSNKSISHFSFLTNAFRALVS 185

Query: 182 LV-ALFYNIQINEVRPVFDVYLPNRKFKKSCPGDPSFLLYLT 222
           +   LF  +QIN++RP FDVYLPN +F+KS PGDPSFLLYL+
Sbjct: 186 ICHKLFGKLQINDLRPDFDVYLPNSRFRKSSPGDPSFLLYLS 227

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|240255663|ref|NP_191295.4| uncharacterized protein [Arabidopsis thaliana] gi|50198814|gb|AAT70440.1| At3g57360 [Arabidopsis thaliana] gi|51972142|gb|AAU15175.1| At3g57360 [Arabidopsis thaliana] gi|332646125|gb|AEE79646.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  208 bits (530), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 111/224 (49%), Positives = 150/224 (66%), Gaps = 25/224 (11%)

Query: 1   MEENDCDSWE--KASDNEDSYVDEIDEEDYYMSGFISKLQFRKDISKAHWNNELGMAEVV 58
           MEE D   WE   +S+NE  + ++ D+E+++  G + KLQFR   SKA W  ELGMAEV 
Sbjct: 1   MEEKD---WEASSSSENEGGFPND-DDEEFHSGGSVPKLQFRVGSSKARWITELGMAEVE 56

Query: 59  EKKGKMWTTTGIVRNGKTYCSIEETLFLAEIGALYLLDN-NDLCLPLKEIYEKIANEKSG 117
            K+GK+WTTTGI+R+GKTYC IEE L+L+EIG L +L N +D+ +PLK++YEKIA EKSG
Sbjct: 57  VKRGKLWTTTGIIRSGKTYCFIEEALYLSEIGELQILGNEDDIVIPLKDLYEKIAEEKSG 116

Query: 118 CSWELFEVYRHLKSLGYIVGRHGVPWIVK---IPKGRDINITSDPVSLQVTPKRHGVMDV 174
           CSWE +EVYR+LK LGYI+GRHGV W +K    P G + +  +                 
Sbjct: 117 CSWENYEVYRYLKGLGYILGRHGVSWTLKDAARPNGEEESACAGEC-------------- 162

Query: 175 EPKEESSLVALFYNIQINEVRPVFDVYLPNRKFKKSCPGDPSFL 218
            P +  ++  L  ++QI + + VFDVYLPN +FKKS PG+PSF+
Sbjct: 163 -PADNDTVTKLLGDMQICDAKAVFDVYLPNSRFKKSSPGEPSFV 205

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297817060|ref|XP_002876413.1| At3g57360 [Arabidopsis lyrata subsp. lyrata] gi|297322251|gb|EFH52672.1| At3g57360 [Arabidopsis lyrata subsp. lyrata]

 Score =  202 bits (515), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 109/221 (49%), Positives = 150/221 (67%), Gaps = 17/221 (7%)

Query: 1   MEENDCDSWE--KASDNEDSYVDEIDEEDYYMSGFISKLQFRKDISKAHWNNELGMAEVV 58
           MEE D   WE   +SDNE  + ++ D+E+++  G + KLQFR   SKA W  ELGMAEV 
Sbjct: 1   MEEKD---WEVSSSSDNEAGFPND-DDEEFHSGGSVPKLQFRVGSSKARWMAELGMAEVE 56

Query: 59  EKKGKMWTTTGIVRNGKTYCSIEETLFLAEIGALYLLDN-NDLCLPLKEIYEKIANEKSG 117
            K+GK+WTTTGI+R+GKTYC IEE L+L+EIG L +L N +D+ +PLK++YEK+A EKSG
Sbjct: 57  VKRGKLWTTTGIIRSGKTYCFIEEALYLSEIGELQILSNEDDIVIPLKDLYEKMAEEKSG 116

Query: 118 CSWELFEVYRHLKSLGYIVGRHGVPWIVKIPKGRDINITSDPVSLQVTPKRHGVMDVEPK 177
           CSW+ +EVYR+LK LGYI+GR+G+ W +K     D  IT      +       + D    
Sbjct: 117 CSWDNYEVYRYLKGLGYILGRNGISWTLK-----DAAITRPNGEEESACAGECLED---- 167

Query: 178 EESSLVALFYNIQINEVRPVFDVYLPNRKFKKSCPGDPSFL 218
            + ++  L  ++QI + + VFDVYLPN +FKKS PG+PSF+
Sbjct: 168 -KDTVTKLLGDMQICDAKAVFDVYLPNSRFKKSSPGEPSFV 207

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	226
TAIR|locus:2082553	254	AT3G57360 "AT3G57360" [Arabido	0.889	0.791	0.490	1.2e-51
ZFIN|ZDB-GENE-050522-454	891	tsen54 "tRNA splicing endonucl	0.548	0.139	0.320	7.8e-11
UNIPROTKB|E1BJ21	528	TSEN54 "Uncharacterized protei	0.530	0.227	0.333	1.8e-10
MGI|MGI:1923515	525	Tsen54 "tRNA splicing endonucl	0.473	0.203	0.345	2.8e-10
RGD|1597379	525	Tsen54 "tRNA splicing endonucl	0.473	0.203	0.345	2.8e-10
UNIPROTKB|Q7Z6J9	526	TSEN54 "tRNA-splicing endonucl	0.508	0.218	0.322	6.8e-10
UNIPROTKB|E2RAR4	531	TSEN54 "Uncharacterized protei	0.508	0.216	0.322	6.9e-10
UNIPROTKB|F1N9B2	530	TSEN54 "Uncharacterized protei	0.5	0.213	0.336	7.2e-10
FB|FBgn0036266	383	CG5626 [Drosophila melanogaste	0.570	0.336	0.301	6e-09

TAIR|locus:2082553 AT3G57360 "AT3G57360" [Arabidopsis thaliana (taxid:3702)]

 Score = 536 (193.7 bits), Expect = 1.2e-51, P = 1.2e-51
 Identities = 109/222 (49%), Positives = 150/222 (67%)

Query:     1 MEENDCDSWEKASDNEDSYVDEIDEEDYYMSGFISKLQFRKDISKAHWNNELGMAEVVEK 60
             MEE D ++   +S+NE  + ++ D+E+++  G + KLQFR   SKA W  ELGMAEV  K
Sbjct:     1 MEEKDWEA-SSSSENEGGFPND-DDEEFHSGGSVPKLQFRVGSSKARWITELGMAEVEVK 58

Query:    61 KGKMWTTTGIVRNGKTYCSIEETLFLAEIGALYLLDN-NDLCLPLKEIYEKIANEKSGCS 119
             +GK+WTTTGI+R+GKTYC IEE L+L+EIG L +L N +D+ +PLK++YEKIA EKSGCS
Sbjct:    59 RGKLWTTTGIIRSGKTYCFIEEALYLSEIGELQILGNEDDIVIPLKDLYEKIAEEKSGCS 118

Query:   120 WELFEVYRHLKSLGYIVGRHGVPWIVKI---PKGRDINITSDPVSLQVTPKRHGVMDVEP 176
             WE +EVYR+LK LGYI+GRHGV W +K    P G + +  +                  P
Sbjct:   119 WENYEVYRYLKGLGYILGRHGVSWTLKDAARPNGEEESACAGEC---------------P 163

Query:   177 KEESSLVALFYNIQINEVRPVFDVYLPNRKFKKSCPGDPSFL 218
              +  ++  L  ++QI + + VFDVYLPN +FKKS PG+PSF+
Sbjct:   164 ADNDTVTKLLGDMQICDAKAVFDVYLPNSRFKKSSPGEPSFV 205

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

ZFIN|ZDB-GENE-050522-454 tsen54 "tRNA splicing endonuclease 54 homolog (S. cerevisiae)" [Danio rerio (taxid:7955)]

 Score = 155 (59.6 bits), Expect = 7.8e-11, Sum P(2) = 7.8e-11
 Identities = 41/128 (32%), Positives = 63/128 (49%)

Query:    42 DISKAHWNNELGMAEVVEKKGKMWTTTGIVRNGKTYCSIEETLFLAEIGALYLLDNNDLC 101
             ++  A W+ E  + E+    GK W T G    GK Y   EE L+L E G + +    DL 
Sbjct:    77 NLVNAVWSPEEKLVELQSPAGKFWQTMGFSERGKQYLQPEEALYLMECGNVQVF-YRDLP 135

Query:   102 LPLKEIYEKIANEKSGCSWELFEVYRHLKSLGYIVGRHGVPWIVKIPKGRDINI-TSDPV 160
             L +++ YE+  +  +  +   ++V+ HLK LGY+V R   P  V     R +N+  SD  
Sbjct:   136 LSIQDGYERFLSSDT-VTLHQYQVFGHLKRLGYVVNRFD-PSSVSSTYERQLNLPASDKQ 193

Query:   161 SLQVTPKR 168
               Q+  KR
Sbjct:   194 KKQLKRKR 201

GO:0045211 "postsynaptic membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005230 "extracellular ligand-gated ion channel activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0048854 "brain morphogenesis" evidence=IMP

UNIPROTKB|E1BJ21 TSEN54 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 163 (62.4 bits), Expect = 1.8e-10, P = 1.8e-10
 Identities = 41/123 (33%), Positives = 61/123 (49%)

Query:    46 AHWNNELGMAEVVEKKGKMWTTTGIVRNGKTYCSIEETLFLAEIGALYLLDNNDLCLPLK 105
             A W  E G  E+    GK W T G    G+     EE L+L E G++ L  + DL L ++
Sbjct:    80 AEWRPEEGFVELKSPAGKFWQTMGFSEQGRQRLHPEEALYLLECGSIQLF-HQDLPLSIQ 138

Query:   106 EIYEKIANEKSGCSWELFEVYRHLKSLGYIVGRHGVPWIVKIPKGRDINITSDPVSLQVT 165
             E Y+ +  E +  ++  ++V+ HLK LGY+V R   P  V  P  R +N+      L+  
Sbjct:   139 EAYQLLLTEDT-VTFLQYQVFSHLKRLGYVVRRFQ-PSSVLSPYERQLNLDGGAQCLEGK 196

Query:   166 PKR 168
              KR
Sbjct:   197 RKR 199

GO:0006388 "tRNA splicing, via endonucleolytic cleavage and ligation" evidence=IEA

MGI|MGI:1923515 Tsen54 "tRNA splicing endonuclease 54 homolog (S. cerevisiae)" [Mus musculus (taxid:10090)]

 Score = 162 (62.1 bits), Expect = 2.8e-10, P = 2.8e-10
 Identities = 38/110 (34%), Positives = 57/110 (51%)

Query:    46 AHWNNELGMAEVVEKKGKMWTTTGIVRNGKTYCSIEETLFLAEIGALYLLDNNDLCLPLK 105
             A W  E G  E+    GK W T G    G+     EE L+L E G++ L    DL L ++
Sbjct:    80 AEWKPEEGFVELTSPAGKFWQTMGYSEEGRQRLHPEEALYLLECGSIQLF-YQDLPLSIQ 138

Query:   106 EIYEKIANEKSGCSWELFEVYRHLKSLGYIVGRHGVPWIVKIPKGRDINI 155
             E Y+ +  E +  S+  ++V+ HLK LGY+V R  +  +V  P  R +N+
Sbjct:   139 EAYQLLLTEDT-LSFLQYQVFSHLKRLGYVVRRFQLSSVVS-PYERQLNL 186

GO:0003674 "molecular_function" evidence=ND

GO:0004519 "endonuclease activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0006388 "tRNA splicing, via endonucleolytic cleavage and ligation" evidence=ISO

GO:0006397 "mRNA processing" evidence=IEA

GO:0008033 "tRNA processing" evidence=IEA

RGD|1597379 Tsen54 "tRNA splicing endonuclease 54 homolog (S. cerevisiae)" [Rattus norvegicus (taxid:10116)]

 Score = 162 (62.1 bits), Expect = 2.8e-10, P = 2.8e-10
 Identities = 38/110 (34%), Positives = 57/110 (51%)

Query:    46 AHWNNELGMAEVVEKKGKMWTTTGIVRNGKTYCSIEETLFLAEIGALYLLDNNDLCLPLK 105
             A W  E G  E+    GK W T G    G+     EE L+L E G++ L    DL L ++
Sbjct:    80 AEWRPEEGFVELTSPAGKFWQTMGYSEEGRQRLHPEEALYLLECGSIQLF-YQDLPLSIQ 138

Query:   106 EIYEKIANEKSGCSWELFEVYRHLKSLGYIVGRHGVPWIVKIPKGRDINI 155
             E Y+ +  E +  S+  ++V+ HLK LGY+V R  +  +V  P  R +N+
Sbjct:   139 EAYQLLLTEDT-LSFLQYQVFSHLKRLGYVVRRFQLSSVVS-PYERQLNL 186

GO:0006388 "tRNA splicing, via endonucleolytic cleavage and ligation" evidence=IEA;ISO

UNIPROTKB|Q7Z6J9 TSEN54 "tRNA-splicing endonuclease subunit Sen54" [Homo sapiens (taxid:9606)]

 Score = 160 (61.4 bits), Expect = 6.8e-10, P = 6.8e-10
 Identities = 38/118 (32%), Positives = 61/118 (51%)

Query:    46 AHWNNELGMAEVVEKKGKMWTTTGIVRNGKTYCSIEETLFLAEIGALYLLDNNDLCLPLK 105
             A W  E G  E+    GK W T G    G+     EE L+L E G+++L  + DL L ++
Sbjct:    80 AEWRPEEGFVELKSPAGKFWQTMGFSEQGRQRLHPEEALYLLECGSIHLF-HQDLPLSIQ 138

Query:   106 EIYEKIANEKSGCSWELFEVYRHLKSLGYIVGRHGVPWIVKIPKGRDINITSDPVSLQ 163
             E Y+ +  + +  ++  ++V+ HLK LGY+V R   P  V  P  R +N+ +    L+
Sbjct:   139 EAYQLLLTDHT-VTFLQYQVFSHLKRLGYVVRRFQ-PSSVLSPYERQLNLDASVQHLE 194

GO:0006397 "mRNA processing" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0006388 "tRNA splicing, via endonucleolytic cleavage and ligation" evidence=IDA

UNIPROTKB|E2RAR4 TSEN54 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 160 (61.4 bits), Expect = 6.9e-10, P = 6.9e-10
 Identities = 38/118 (32%), Positives = 59/118 (50%)

Query:    46 AHWNNELGMAEVVEKKGKMWTTTGIVRNGKTYCSIEETLFLAEIGALYLLDNNDLCLPLK 105
             A W  E G  E+    GK W T G    G+     EE L+L E G++ L  + DL L ++
Sbjct:    80 AEWRPEEGFVELKSPAGKFWQTMGFSEQGRQRLHPEEALYLLECGSIQLF-HQDLPLSIQ 138

Query:   106 EIYEKIANEKSGCSWELFEVYRHLKSLGYIVGRHGVPWIVKIPKGRDINITSDPVSLQ 163
             E Y+ +  E +  ++  ++V+ HLK LGY+V R   P  +  P  R +N+      L+
Sbjct:   139 EAYQLLLTEDA-VTFLQYQVFSHLKRLGYVVRRFQ-PGSILSPYERQLNLDGSAQCLE 194

GO:0006388 "tRNA splicing, via endonucleolytic cleavage and ligation" evidence=IEA

UNIPROTKB|F1N9B2 TSEN54 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 153 (58.9 bits), Expect = 7.2e-10, Sum P(2) = 7.2e-10
 Identities = 39/116 (33%), Positives = 61/116 (52%)

Query:    42 DISKAHWNNELGMAEVVEKKGKMWTTTGIVRNGKTYCSIEETLFLAEIGALYLLDNNDLC 101
             ++ KA W  E  + E+    GK W T G    GK     EE L+L E G+L L    D+ 
Sbjct:    75 NLVKAVWKPEQSVVELESPAGKFWHTMGFSERGKQCLLPEEALYLLECGSLQLF-YKDVP 133

Query:   102 LPLKEIYEKIANEKSGCSWELFEVYRHLKSLGYIVGRHGVPWIVKIPKGRDINITS 157
             + ++E YE + ++++  +   ++V+ HLK LG+IV R   P  V  P  R +N+ S
Sbjct:   134 MSVREAYEILLSQEA-MNLLHYQVFSHLKQLGFIVLRFN-PSTVLSPYERQLNLES 187

GO:0006388 "tRNA splicing, via endonucleolytic cleavage and ligation" evidence=IEA

FB|FBgn0036266 CG5626 [Drosophila melanogaster (taxid:7227)]

 Score = 125 (49.1 bits), Expect = 6.0e-09, Sum P(2) = 6.0e-09
 Identities = 41/136 (30%), Positives = 64/136 (47%)

Query:    11 KASDNEDSY--VDEIDEEDYYMSGFIS--KLQFRKDISKAHWNNELGMAEVVEKKGKMWT 66
             K + NE +   V+E+     Y+   +S  +++     + A WN E  +AEV  K GK + 
Sbjct:    41 KRTKNEGTAAEVEELKRAQEYLRAQLSVPRIERLGGRALAIWNEEQQVAEVKRKDGK-FE 99

Query:    67 TTGIVRNGKTYCSIEETLFLAEIGALYLLDNNDLCLPLKEIYEKIANEKSGCSWELFEVY 126
               G    GK Y    E +FL E+G L L +   L + +++ Y  +  E     +  + VY
Sbjct:   100 NFGYSEQGKLYLEYYEAMFLLEVGRLQL-EYCGLVVSIEQAYVLLLGELESERYTNYLVY 158

Query:   127 RHLKSLGYIVGRHGVP 142
               L   GYIV +H VP
Sbjct:   159 SALSRSGYIVVKH-VP 173

GO:0004017 "adenylate kinase activity" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00440184 hypothetical protein (283 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	226
pfam12928	72	pfam12928, tRNA_int_end_N2, tRNA-splicing endonucl	2e-20
PRK09297	169	PRK09297, PRK09297, tRNA-splicing endonuclease sub	7e-04

>gnl|CDD|221860 pfam12928, tRNA_int_end_N2, tRNA-splicing endonuclease subunit sen54 N-term

 Score = 81.5 bits (202), Expect = 2e-20
 Identities = 26/65 (40%), Positives = 35/65 (53%), Gaps = 1/65 (1%)

Query: 35 SKLQFRKDISKAHWNNELGMAEVVEKKGKMWTTTGIV-RNGKTYCSIEETLFLAEIGALY 93
           +    K +S+A W+ E  MAEV   KGK + T G   RNGKT+   EE L+L E G+L 
Sbjct: 8  PRGHKLKSLSEAVWDPEEQMAEVTRAKGKFFKTMGRADRNGKTWLLPEEALYLLERGSLQ 67

Query: 94 LLDNN 98
          +    
Sbjct: 68 IYWPG 72

This is an N-terminal family of archaeal and metazoan sen54 proteins that forms one of the tRNA-splicing endonuclease subunits. Length = 72

>gnl|CDD|236459 PRK09297, PRK09297, tRNA-splicing endonuclease subunit alpha; Reviewed

 Score = 38.7 bits (91), Expect = 7e-04
 Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 3/59 (5%)

Query: 79  SIEETLFLAEIGALYLLDNNDLCLPLKEIYEKIAN-EKSGCSWELFEVYRHLKSLGYIV 136
           S+ E L+L E G L ++D +   L  +E+YE      +       + VY+ L+  GYIV
Sbjct: 38  SLIEALYLVEKGWLEVVDKDGELLSFEELYELAREIIEKFDI--KYLVYKDLRDRGYIV 94

Length = 169

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	226
KOG4772	364	consensus Predicted tRNA-splicing endonuclease sub	100.0
PF12928	72	tRNA_int_end_N2: tRNA-splicing endonuclease subuni	99.88
PRK09297	169	tRNA-splicing endonuclease subunit alpha; Reviewed	99.4
TIGR00324	170	endA tRNA intron endonuclease. The enzyme catalyse	99.35
PRK09300	330	tRNA splicing endonuclease; Reviewed	99.14
COG1676	181	SEN2 tRNA splicing endonuclease [Translation, ribo	99.05
PRK09300	330	tRNA splicing endonuclease; Reviewed	98.92
PF02778	67	tRNA_int_endo_N: tRNA intron endonuclease, N-termi	98.62
PRK09539	124	tRNA-splicing endonuclease subunit beta; Reviewed	96.36
KOG4685	271	consensus tRNA splicing endonuclease SEN2 [Transla	95.94
PF01974	85	tRNA_int_endo: tRNA intron endonuclease, catalytic	92.86
KOG4133	290	consensus tRNA splicing endonuclease [Translation,	87.7

>KOG4772 consensus Predicted tRNA-splicing endonuclease subunit [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=3.5e-37  Score=278.99  Aligned_cols=189  Identities=38%  Similarity=0.569  Sum_probs=141.4

Q ss_pred             cccCcccceeecCCeEEEEEeCCCCeEEEEcccCcceeeeeEEeCCeEEEehHHHHHHHhcCcE-EEEcCCCcccCHHHH
Q 027232           29 YMSGFISKLQFRKDISKAHWNNELGMAEVVEKKGKMWTTTGIVRNGKTYCSIEETLFLAEIGAL-YLLDNNDLCLPLKEI  107 (226)
Q Consensus        29 ~~~~s~~R~~~~k~~s~a~W~pe~~~a~v~~~rG~~~~~~G~~~~~~l~L~peEALYL~ErG~L-~l~~~~g~~LSlqe~  107 (226)
                      +..+|.+|.++++...+|.|+.+.+||+|.+++|++|+|||+++.|++||.+||||||+|||.+ .+..+.|++||++++
T Consensus        63 fd~lSvprl~~~~~~~ia~wn~e~gmAeVekk~Gkl~~TmG~adsgklyl~~eEalYL~ErG~l~~cg~e~~I~~sl~dL  142 (364)
T KOG4772|consen   63 FDGLSVPRLQFRVGSEIAGWNVELGMAEVEKKRGKLWTTMGIADSGKLYLFIEEALYLSERGELQSCGHEDDIVISLKDL  142 (364)
T ss_pred             HhcCCchHHHHhhhhHHHHHHHhcCeeeEeecCCcceeeeeeeccCceEEeHHHHHHHHHhhhhhhhcCccchhhHHHHH
Confidence            4468999999999999999999999999999999999999999999999999999999999944 445567899999999


Q ss_pred             HHHHHhccCCCCccceeeehhhhcCCeEEeecCCCceecCCCCcccccCCCccccccc--------------cccc----
Q 027232          108 YEKIANEKSGCSWELFEVYRHLKSLGYIVGRHGVPWIVKIPKGRDINITSDPVSLQVT--------------PKRH----  169 (226)
Q Consensus       108 y~l~~~~~~~~~~~kY~VY~~Lkr~GYiV~R~~~~w~~~~~~~~~~~~~~~~~~~~~~--------------~~~~----  169 (226)
                      |+.+..+..  +|++|.||+||||+||||+||+++...++      ...+..+||.+.              .+++    
T Consensus       143 ys~~~s~~~--s~enYlVyahLkrlGfiv~rhn~~~~~~~------e~~~~~kiw~~k~a~~~~L~~p~~i~es~~f~~~  214 (364)
T KOG4772|consen  143 YSEIASEKY--SMENYLVYAHLKRLGFIVKRHNVPAAVKT------EFFPLKKIWTLKDAITWRLLSPSKIQESSCFSEF  214 (364)
T ss_pred             HHHHhhhhc--chhHHHHHHHHHhcceeeeccCCCccccc------ccccHHHHHHHHHHHhccCCCchhhhhhhhhhhh
Confidence            999997554  59999999999999999999997622111      111111111111              1100    


Q ss_pred             --CccCC----------CCCChhh-HH---HHHhhcc-cCCCceeEEEeCCCCCCccCCCCCCceEEEEeecc
Q 027232          170 --GVMDV----------EPKEESS-LV---ALFYNIQ-INEVRPVFDVYLPNRKFKKSCPGDPSFLLYLTCKY  225 (226)
Q Consensus       170 --~~~~~----------~~~~y~~-i~---~~l~~i~-~~~~~i~F~VyKP~~~FkKssP~~PDF~i~V~nk~  225 (226)
                        +...+          -++++.+ +|   .+.+.++ .+|+.++|++|||.++|+||.|+.|||+|||+|+-
T Consensus       215 ~~r~~~~s~LL~d~~~~d~~~v~Dp~yLp~~~~k~~~k~spie~tfs~~kpfS~fgks~~s~pdf~v~v~~~~  287 (364)
T KOG4772|consen  215 FYRRDTVSKLLYDMLICDARSVFDPVYLPNSQFKEFQKSSPIEPTFSFVKPFSNFGKSDPSLPDFQVFVYNKN  287 (364)
T ss_pred             hhhhhHHHHHHHhhhhcccccccchhcCcchhhhhhcccCCCCCcceeecccccccCCCCCCCceeEEEEecc
Confidence              00000          0111111 00   0111111 37999999999999999999999999999999973

>PF12928 tRNA_int_end_N2: tRNA-splicing endonuclease subunit sen54 N-term; InterPro: IPR024336 tRNA-splicing endonucleases (3

Probab=99.88  E-value=6.8e-23  Score=150.83  Aligned_cols=66  Identities=38%  Similarity=0.535  Sum_probs=63.5

Q ss_pred             CcccceeecCCeEEEEEeCCCCeEEEEcccCcceeeee-EEeCCeEEEehHHHHHHHhcCcEEEEcC
Q 027232           32 GFISKLQFRKDISKAHWNNELGMAEVVEKKGKMWTTTG-IVRNGKTYCSIEETLFLAEIGALYLLDN   97 (226)
Q Consensus        32 ~s~~R~~~~k~~s~a~W~pe~~~a~v~~~rG~~~~~~G-~~~~~~l~L~peEALYL~ErG~L~l~~~   97 (226)
                      ++.+|+|+.|++++|+|+|+.++|+|+++||+||++|| ...++++||+|||||||+|||+|+|+|+
T Consensus         5 Ls~~R~~~~k~~~~a~w~p~~~~a~v~~~rG~~~~~mG~~~~~~~~~L~pEEalyLvErGsL~l~~~   71 (72)
T PF12928_consen    5 LSYERVHKSKNLSRAIWDPELRMAEVTHPRGKFFQTMGRADRGGKLWLLPEEALYLVERGSLDLWWP   71 (72)
T ss_pred             hhcccccccCCEEEEEEECCCCEEEEECCcCCcHHhcCCccCCCeEEEeHHHHHHHHhcCcEEEEeC
Confidence            58899999999999999999999999999999999999 6799999999999999999999999975

1.27.9 from EC) catalyse the endonucleolytic cleavage of pre tRNA at the 5' and 3' splice sites to release the intron and produces two half tRNA molecules bearing 5' hydroxyl and 2', 3'-cyclic phosphate termini [, ]. The genes encoding these proteins are homologous in eukaryotes and archea. The eukaryotic tRNA-splicing endonucleases are heterotetrameric while the archaeal endonucleases can be split into homodimeric and homotetrameric subgroups. This entry represents the N-terminal domain of Sen54, a non-catalytic subunit of the tRNA-splicing endonuclease complex. Defects in human Sen54 are a cause of pontocerebellar hypoplasia type 4 [].

>PRK09297 tRNA-splicing endonuclease subunit alpha; Reviewed

Probab=99.40  E-value=1.7e-13  Score=115.70  Aligned_cols=71  Identities=28%  Similarity=0.340  Sum_probs=62.2

Q ss_pred             eeEEeCCeEEEehHHHHHHHhcCcEEEEcCCCcccCHHHHHHHHHhccCCCCccceeeehhhhcCCeEEeec
Q 027232           68 TGIVRNGKTYCSIEETLFLAEIGALYLLDNNDLCLPLKEIYEKIANEKSGCSWELFEVYRHLKSLGYIVGRH  139 (226)
Q Consensus        68 ~G~~~~~~l~L~peEALYL~ErG~L~l~~~~g~~LSlqe~y~l~~~~~~~~~~~kY~VY~~Lkr~GYiV~R~  139 (226)
                      +|+..++.|.|+|+||+||+++|.|+|.+.++.+||++++++.+... +..+..+|.||+|||++||+|+..
T Consensus        27 yG~~~~~~L~Ls~~Ea~yL~~~g~L~v~~~~~~~~s~~el~~~~~~~-~~~F~~~y~VY~dLr~rG~~vk~G   97 (169)
T PRK09297         27 YGKLLGNPLELSLIEALYLVEKGWLEVVDKDGELLSFEELYELAREI-IEKFDIKYLVYKDLRDRGYIVKSG   97 (169)
T ss_pred             cCCccCCcEEEcHHHHHHHHHCCCEEEEcCCCcccCHHHHHHHHHhc-cccHHHHhHHHHHHHHCCCccCCC
Confidence            34455589999999999999999999998778889999999998853 346899999999999999999875

>TIGR00324 endA tRNA intron endonuclease

Probab=99.35  E-value=6.1e-13  Score=112.51  Aligned_cols=87  Identities=17%  Similarity=0.242  Sum_probs=69.6

Q ss_pred             EEEeCCCCeEEEEcccCcceeeeeEEeCCeEEEehHHHHHHHhcCcEEEEcCCCcccCHHHHHHHHHhccCCCCccceee
Q 027232           46 AHWNNELGMAEVVEKKGKMWTTTGIVRNGKTYCSIEETLFLAEIGALYLLDNNDLCLPLKEIYEKIANEKSGCSWELFEV  125 (226)
Q Consensus        46 a~W~pe~~~a~v~~~rG~~~~~~G~~~~~~l~L~peEALYL~ErG~L~l~~~~g~~LSlqe~y~l~~~~~~~~~~~kY~V  125 (226)
                      .+|+.+.....  ..+|.|.+    ..++.+.|+|+||+||+++|.|+|.+.++.+||++++++.+.... ..++.+|.|
T Consensus        12 ~v~~~~~~~~l--~~~~~yG~----~~~~~l~LsliEa~yL~~~g~l~v~~~~~~~ls~~el~~~~~~~~-~~f~~~y~V   84 (170)
T TIGR00324        12 IVKKKTIISDL--TTREEYGN----LDGDSLNLSLIESLYLIDLGKLRLIRSDSEPLSREELSDLARKVE-RGFMRKYLV   84 (170)
T ss_pred             EECCcchhhHH--HhcccCCC----CcCCccEEeHHHHHHHHhCCcEEEEcCCCCcCCHHHHHHHHHhcc-ccHHHhhHH
Confidence            34666533322  24566544    445789999999999999999999877788999999999988543 358999999


Q ss_pred             ehhhhcCCeEEeec
Q 027232          126 YRHLKSLGYIVGRH  139 (226)
Q Consensus       126 Y~~Lkr~GYiV~R~  139 (226)
                      |+|||++||+|+..
T Consensus        85 Y~dLR~rG~~vk~G   98 (170)
T TIGR00324        85 YKDLRDRGYVVKTG   98 (170)
T ss_pred             HHHHHHCCCEecCC
Confidence            99999999999876

The enzyme catalyses the endonucleolytic cleavage of pre tRNA at the 5' and 3' splice sites to release the intron and produces two half tRNA molecules bearing 5' hydroxyl and 2', 3'-cyclic phosphate termini. The genes are homologous in Eucarya and Archea. The two yeast genes have been functionally studied (PubMed:97344075) and are two subunits of a heterotetramer enzyme in yeast the other two subunits of which have no known homologs.

>PRK09300 tRNA splicing endonuclease; Reviewed

Probab=99.14  E-value=3.7e-11  Score=111.12  Aligned_cols=66  Identities=17%  Similarity=0.250  Sum_probs=58.5

Q ss_pred             eEEeCCeEEEehHHHHHHHhcCcEEEEcCCCcccCHHHHHHHHHhccCCCCccceeeehhhhcCCeEEeecC
Q 027232           69 GIVRNGKTYCSIEETLFLAEIGALYLLDNNDLCLPLKEIYEKIANEKSGCSWELFEVYRHLKSLGYIVGRHG  140 (226)
Q Consensus        69 G~~~~~~l~L~peEALYL~ErG~L~l~~~~g~~LSlqe~y~l~~~~~~~~~~~kY~VY~~Lkr~GYiV~R~~  140 (226)
                      |+..++.|.|+|.||+||+|+|.|++. .   .||++++++.+...  ..+..+|.||++||++||+|+..+
T Consensus        27 G~~~g~~L~LslvEalYL~~~g~l~v~-~---~~~~eel~~~~~~~--~~f~~~y~VY~dLR~rGy~vk~gg   92 (330)
T PRK09300         27 GRPKGDGLELAPVEAAYLLFRGKIEIV-D---GLGFRDLFARASLR--PNFELRYLVYKDLRERGYYVQPGD   92 (330)
T ss_pred             CcCCCCeeEEcHHHHHHHHHcCCEEEe-c---CCCHHHHHHHhhhc--ccchheehHHHHHHHCCceeccCC
Confidence            777779999999999999999999998 2   29999999998864  358899999999999999999854

>COG1676 SEN2 tRNA splicing endonuclease [Translation, ribosomal structure and biogenesis]

Probab=99.05  E-value=4.8e-10  Score=95.95  Aligned_cols=71  Identities=28%  Similarity=0.357  Sum_probs=62.6

Q ss_pred             eEEeCCeEEEehHHHHHHHhcCcEEEEcCCCcccCHHHHHHHHHhccCCCCccceeeehhhhcCCeEEeecC
Q 027232           69 GIVRNGKTYCSIEETLFLAEIGALYLLDNNDLCLPLKEIYEKIANEKSGCSWELFEVYRHLKSLGYIVGRHG  140 (226)
Q Consensus        69 G~~~~~~l~L~peEALYL~ErG~L~l~~~~g~~LSlqe~y~l~~~~~~~~~~~kY~VY~~Lkr~GYiV~R~~  140 (226)
                      |...+..|.|++.||+||.|+|.|.+...++.++|+++++.+..... ..+..+|.||++||++||+|+..-
T Consensus        39 ~~~~~~~l~ls~~ea~yl~e~g~l~~~~~~~~~~s~eel~~~~~~~~-~~f~~~y~VY~dLr~rG~vvktG~  109 (181)
T COG1676          39 GTTERDPLQLSLIEALYLAERGFLKVESRDGKILSFEELMDLGAEKE-ESFDERYLVYRDLRDRGYVVKTGL  109 (181)
T ss_pred             cccccccceecHHHHHHHhhcceEeeccCCCccccHHHHHHHHhhcc-cccceeeeehhhHHhCceEECccc
Confidence            33444889999999999999999999988889999999999988654 458999999999999999998654

>PRK09300 tRNA splicing endonuclease; Reviewed

Probab=98.92  E-value=6.8e-10  Score=102.77  Aligned_cols=61  Identities=23%  Similarity=0.284  Sum_probs=54.8

Q ss_pred             CCeEEEehHHHHHHHhcCcEEEEcCCCcccCHHHHHHHHHhccCCCCccceeeehhhhcCCeEEeec
Q 027232           73 NGKTYCSIEETLFLAEIGALYLLDNNDLCLPLKEIYEKIANEKSGCSWELFEVYRHLKSLGYIVGRH  139 (226)
Q Consensus        73 ~~~l~L~peEALYL~ErG~L~l~~~~g~~LSlqe~y~l~~~~~~~~~~~kY~VY~~Lkr~GYiV~R~  139 (226)
                      +..|.|+++||+||+++|.|+|     ..||++++.+.+..... .+..+|.||+|||.+||+|+..
T Consensus       196 ~~~L~LslvEA~yL~~~g~L~v-----~~~~~~el~~~~~~~~~-~F~~~y~VY~dLR~rG~~vk~G  256 (330)
T PRK09300        196 GRRLQLSLVEAAYLLERGVLSV-----EILDADEFVERAREVEG-EFDRKLAVYRDLRERGFVPKTG  256 (330)
T ss_pred             CCceeECHHHHHHHHhCCCEEE-----eeCCHHHHHHHHhhccc-chHhhhHHHHHHHHCCCEecCC
Confidence            4499999999999999999999     36999999999986443 4899999999999999999987

>PF02778 tRNA_int_endo_N: tRNA intron endonuclease, N-terminal domain; InterPro: IPR006678 This entry represents a 2-layer alpha/beta domain found at the N-terminal in homotetrameric tRNA-intron endonucleases [], and as domains 1 (N-terminal) and 3 in the homodimeric enzymes []

Probab=98.62  E-value=5.8e-08  Score=70.71  Aligned_cols=40  Identities=25%  Similarity=0.419  Sum_probs=35.4

Q ss_pred             eeE-EeCCeEEEehHHHHHHHhcCcEEEEcCCCcccCHHHHH
Q 027232           68 TGI-VRNGKTYCSIEETLFLAEIGALYLLDNNDLCLPLKEIY  108 (226)
Q Consensus        68 ~G~-~~~~~l~L~peEALYL~ErG~L~l~~~~g~~LSlqe~y  108 (226)
                      +|+ ..+++|.|+++||+||+++|.|+|. .+|.+||+++++
T Consensus        27 YG~~~~~~~L~LslvEa~YL~~~g~l~v~-~~g~~ls~~el~   67 (67)
T PF02778_consen   27 YGKPLDDERLQLSLVEALYLLEKGKLEVY-EDGKKLSFEELW   67 (67)
T ss_dssp             -SEECETSCEEEEHHHHHHHHHTTSEEEE-TTSCEE-HHHHH
T ss_pred             CCCCCCCCcEEEeHHHHHHHHhCCcEEEe-eCCcCCCHHHhC
Confidence            456 6889999999999999999999999 899999999985

tRNA-intron endonucleases (3.1.27.9 from EC) remove tRNA introns by cleaving pre-tRNA at the 5'- and 3'-splice sites to release the intron. The products are an intron and two tRNA half-molecules bearing 2',3' cyclic phosphate and 5'-hydroxyl termini []. These enzymes recognise a pseudosymmetric substrate in which 2 bulged loops of 3 bases are separated by a stem of 4 bp []. Although homotetrameric enzymes contain four active sites, only two participate in the cleavage, and should therefore, be considered as a dimer of dimers.; GO: 0000213 tRNA-intron endonuclease activity, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation; PDB: 1A79_D 2CV8_A 3P1Z_B 3AJV_B 3IEY_A 2ZYZ_D 2GJW_D 1R0V_A 3P1Y_C 1R11_B ....

>PRK09539 tRNA-splicing endonuclease subunit beta; Reviewed

Probab=96.36  E-value=0.0016  Score=53.07  Aligned_cols=24  Identities=21%  Similarity=0.254  Sum_probs=21.2

Q ss_pred             CCCccceeeehhhhcCCeEEeecC
Q 027232          117 GCSWELFEVYRHLKSLGYIVGRHG  140 (226)
Q Consensus       117 ~~~~~kY~VY~~Lkr~GYiV~R~~  140 (226)
                      ..++.+|.||+|||++||+|+...
T Consensus        32 ~~~~~kylVYkDLR~RGyvVk~G~   55 (124)
T PRK09539         32 LVNWDKVDVFVDLKQRGRKTIDGI   55 (124)
T ss_pred             hcccceEEEehhHHhCCCeeccCC
Confidence            357999999999999999998864

>KOG4685 consensus tRNA splicing endonuclease SEN2 [Translation, ribosomal structure and biogenesis]

Probab=95.94  E-value=0.0048  Score=55.72  Aligned_cols=64  Identities=22%  Similarity=0.330  Sum_probs=53.7

Q ss_pred             CeEEEehHHHHHHH-hcCcEEEEcCCCcccCHHHHHHHHHhccCCCCccceeeehhhhcCCeEEeec
Q 027232           74 GKTYCSIEETLFLA-EIGALYLLDNNDLCLPLKEIYEKIANEKSGCSWELFEVYRHLKSLGYIVGRH  139 (226)
Q Consensus        74 ~~l~L~peEALYL~-ErG~L~l~~~~g~~LSlqe~y~l~~~~~~~~~~~kY~VY~~Lkr~GYiV~R~  139 (226)
                      .-|.|+||||.||. .-+.|.|. .+-.+++-.+++..+..-.+ -|---|.+|.|||..|+||+..
T Consensus       111 ~~LqLs~eEAffL~y~lkci~I~-~~k~l~~~v~~w~am~~~~~-~F~~~y~~y~hlrskGWvvrsG  175 (271)
T KOG4685|consen  111 EWLQLSPEEAFFLSYALKCIKIS-LNKCLLNEVDLWTAMRSLQP-NFGKLYKAYHHLRSKGWVVRSG  175 (271)
T ss_pred             hHhhcCHHHHHHHHhhhceeEEe-hhhccccHHHHHHHHhhcch-hhHHHHHHHHHHHHcCcEeccc
Confidence            46899999999996 56888998 55678999999998876544 3788899999999999999973

>PF01974 tRNA_int_endo: tRNA intron endonuclease, catalytic C-terminal domain; InterPro: IPR006677 This entry represents a 3-layer alpha/beta/alpha domain found as the catalytic domain at the C-terminal in homotetrameric tRNA-intron endonucleases [], and as domains 2 and 4 (C-terminal) in the homodimeric enzymes []

Probab=92.86  E-value=0.021  Score=42.65  Aligned_cols=21  Identities=43%  Similarity=0.877  Sum_probs=17.8

Q ss_pred             CccceeeehhhhcCCeEEeec
Q 027232          119 SWELFEVYRHLKSLGYIVGRH  139 (226)
Q Consensus       119 ~~~kY~VY~~Lkr~GYiV~R~  139 (226)
                      |+.+|.||++||++||+|+..
T Consensus         1 F~~~y~vY~dLr~rG~~v~~G   21 (85)
T PF01974_consen    1 FWRKYAVYRDLRSRGYVVKPG   21 (85)
T ss_dssp             HHHHHHHHHHHHHTT-EEEEE
T ss_pred             CchhhHHHHHHHHCCCEECcc
Confidence            357899999999999999977

tRNA-intron endonucleases (3.1.27.9 from EC) remove tRNA introns by cleaving pre-tRNA at the 5'- and 3'-splice sites to release the intron. The products are an intron and two tRNA half-molecules bearing 2',3' cyclic phosphate and 5'-hydroxyl termini []. These enzymes recognise a pseudosymmetric substrate in which 2 bulged loops of 3 bases are separated by a stem of 4 bp []. Although homotetrameric enzymes contain four active sites, only two participate in the cleavage, and should therefore, be considered as a dimer of dimers.; GO: 0000213 tRNA-intron endonuclease activity, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation; PDB: 3IEY_B 3IF0_X 2CV8_A 3P1Z_B 3AJV_B 2GJW_D 1R0V_A 3P1Y_C 1R11_B 1RLV_A ....

>KOG4133 consensus tRNA splicing endonuclease [Translation, ribosomal structure and biogenesis]

Probab=87.70  E-value=0.38  Score=43.83  Aligned_cols=22  Identities=18%  Similarity=0.370  Sum_probs=19.3

Q ss_pred             ccceeeehhhhcCCeEEeecCC
Q 027232          120 WELFEVYRHLKSLGYIVGRHGV  141 (226)
Q Consensus       120 ~~kY~VY~~Lkr~GYiV~R~~~  141 (226)
                      ..+|.+|++|.++||.+-..+.
T Consensus       194 ~lrY~iyKdLwdrGfyLs~ggr  215 (290)
T KOG4133|consen  194 ELRYSIYKDLWDRGFYLSPGGR  215 (290)
T ss_pred             hhHHHHHHHHHHcCceeCcccc
Confidence            6799999999999999987663

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	226
1a79_A	171	TRNA endonuclease; 2.28A {Methanocaldococcus janna	5e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-05
2cv8_A	180	TRNA-splicing endonuclease; tRNA-intron endonuclea	9e-05
2zyz_B	183	TRNA-splicing endonuclease; crenarchaea, heterotet	1e-04
3iey_B	153	NEQ261; protein heterodimer, endonuclease, hydrola	2e-04
3iey_A	154	TRNA-splicing endonuclease; protein heterodimer, e	3e-04
3ajv_A	190	Putative uncharacterized protein; ENDA, archaea cr	4e-04

>1a79_A TRNA endonuclease; 2.28A {Methanocaldococcus jannaschii} SCOP: c.52.2.1 d.75.1.1 Length = 171

 Score = 44.2 bits (104), Expect = 5e-06
 Identities = 25/106 (23%), Positives = 47/106 (44%), Gaps = 5/106 (4%)

Query: 69  GIVRNGKTYCSIEETLFLAEIGALYLLDNNDLCLPLKEIYEKIANEKSGCSWELFEVYRH 128
           G V       S+ E L+L  +G L +   ++  L  +E+YE  A          + VY+ 
Sbjct: 28  GNVEGNFLSLSLVEALYLINLGWLEVKYKDNKPLSFEELYE-YARNVEERLCLKYLVYKD 86

Query: 129 LKSLGYIVG---RHGVPWIVKIPKGRDINITSDPVSLQVTPKRHGV 171
           L++ GYIV    ++G  + +   +G +I+       ++V P+    
Sbjct: 87  LRTRGYIVKTGLKYGADFRL-YERGANIDKEHSVYLVKVFPEDSSF 131

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.3 bits (101), Expect = 3e-05
 Identities = 41/246 (16%), Positives = 77/246 (31%), Gaps = 67/246 (27%)

Query: 13  SDNEDSYVDEID----EEDYYMSGFISKLQFRKDISKA------------HWNNELGMAE 56
           S     Y+++ D    +   +    +S+LQ    + +A                  G+  
Sbjct: 106 SMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLID-----GVLG 160

Query: 57  VVEKKGKMWTTTGIVRNGKTYCSIEETLFLAEIGALY----LLDN-NDLCLPLKEIY--- 108
                GK W    +  + K  C ++  +F   +        +L+    L   +   +   
Sbjct: 161 S----GKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSR 216

Query: 109 -EKIANEKSGCSWELFEVYRHLKSLGY----IVGRHGVPWIVKIPKG-----------RD 152
            +  +N K        E+ R LKS  Y    +V  + V    K               R 
Sbjct: 217 SDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLN-V-QNAKAWNAFNLSCKILLTTRF 274

Query: 153 INITSDPVSLQVTPKR---HGVMDVEPKEESSLVALFYNIQINEVRPVFDVYLPNRKFKK 209
             +T D +S   T      H  M + P E  SL+  + + +  +        LP    ++
Sbjct: 275 KQVT-DFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD--------LP----RE 321

Query: 210 SCPGDP 215
               +P
Sbjct: 322 VLTTNP 327

>2cv8_A TRNA-splicing endonuclease; tRNA-intron endonuclease, structural genomics, NPPSFA; 2.80A {Sulfolobus tokodaii} Length = 180

 Score = 40.7 bits (95), Expect = 9e-05
 Identities = 20/87 (22%), Positives = 39/87 (44%), Gaps = 5/87 (5%)

Query: 62  GKMWTTTGIVRNGKTYCSIEETLFLAEIGALYLLDNNDLCLPLKEIYEKIANEKSGCSWE 121
           G     +    N +   S+ E ++L + G L ++ N +  L  + +Y+ I   +      
Sbjct: 32  GISKPKSAEEINSELILSLIEGVYLVKKGKLEIVSNGER-LDFERLYQ-IGVTQIPRFRI 89

Query: 122 LFEVYRHLKSLGYIVG---RHGVPWIV 145
           L+ VY  L+  GY+V    ++G  + V
Sbjct: 90  LYSVYEDLREKGYVVRSGIKYGADFAV 116

>2zyz_B TRNA-splicing endonuclease; crenarchaea, heterotetramer, RNA PROC endonuclease, hydrolase, tRNA processing; 1.70A {Pyrobaculum aerophilum} Length = 183

 Score = 40.8 bits (95), Expect = 1e-04
 Identities = 17/71 (23%), Positives = 37/71 (52%), Gaps = 4/71 (5%)

Query: 78  CSIEETLFLAEIGALYLLDNNDLCLPLKEIYEKIANEKSGCSWELFEVYRHLKSLGYIV- 136
             + E L+LAE G L ++  +   +  +E+   +  E+     E++++Y++ + LGY+V 
Sbjct: 50  LGLYEALYLAEKGRLKVMGEDGREVAPEELAA-LGRERMRNFDEIYKIYKYFRDLGYVVK 108

Query: 137 --GRHGVPWIV 145
              + G  + V
Sbjct: 109 SGLKFGALFSV 119

>3iey_B NEQ261; protein heterodimer, endonuclease, hydrolase, nuclease, tRNA processing, hydrolase-RNA binding protein complex; 2.11A {Nanoarchaeum equitans} PDB: 3if0_X Length = 153

 Score = 39.1 bits (91), Expect = 2e-04
 Identities = 16/96 (16%), Positives = 31/96 (32%), Gaps = 5/96 (5%)

Query: 80  IEETLFLAEIGALYLLDNNDLCLPLKEIYE----KIANEKSGCSWELFEVYRHLKSLGYI 135
           +   + ++E   L++L N        ++ E    K   +K    WE++   + L   GY 
Sbjct: 17  MGNYIKISEPELLFVLRNKPQIKDRLKLDEKTIIKEGVKKYKNFWEIYYTVKDLILRGYR 76

Query: 136 VGRHGVPWIVKIPKGRDINITSDPVSLQVTPKRHGV 171
           V   G    +   KG           +        +
Sbjct: 77  VRFDGFFIEL-YEKGIIPGTIEQDYLVYPVSGEIRM 111

>3iey_A TRNA-splicing endonuclease; protein heterodimer, endonuclease, hydrolase, nuclease, tRNA processing, hydrolase-RNA binding protein complex; 2.11A {Nanoarchaeum equitans} Length = 154

 Score = 39.2 bits (91), Expect = 3e-04
 Identities = 15/85 (17%), Positives = 29/85 (34%), Gaps = 6/85 (7%)

Query: 78  CSIEETLFLAEIGALYLLDNNDLCLPLKEIYEKIANEKSGCSWELFEVYRHLKSLGYIVG 137
             + E  +L + G L + + +D  L  +E  +             ++ Y+ L+  GY +G
Sbjct: 17  LPLIEAYYLLDKGELEVYE-DDKKLSKEEFLK-KCLTYDERFLIRYKAYKELRDKGYTLG 74

Query: 138 RH---GVPWIVKIPKGRDINITSDP 159
                G  + V    G         
Sbjct: 75  TALKFGADFRV-YDIGVIPKKGKRS 98

>3ajv_A Putative uncharacterized protein; ENDA, archaea crenarch hydrolase; 1.70A {Aeropyrum pernix} PDB: 3p1z_A Length = 190

 Score = 39.2 bits (91), Expect = 4e-04
 Identities = 12/68 (17%), Positives = 22/68 (32%), Gaps = 8/68 (11%)

Query: 69  GIVRNGKTYCSIEETLFLAEIGALYLLDNNDLCLPLKEIYEKIANEKSGCSWELFEVYRH 128
           G +R G+      E  + A  G L + +       ++ I     +       +   VY  
Sbjct: 60  GYLRKGRL--EPLEAAYQASRGMLCMGETRGWAAAVEVIAGLGLS------LDTALVYFD 111

Query: 129 LKSLGYIV 136
           L+  G   
Sbjct: 112 LRRKGRKP 119

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	226
2ohc_A	289	TRNA-splicing endonuclease; intron, hydrolase; 2.5	99.44
2cv8_A	180	TRNA-splicing endonuclease; tRNA-intron endonuclea	99.41
3iey_A	154	TRNA-splicing endonuclease; protein heterodimer, e	99.39
2zyz_B	183	TRNA-splicing endonuclease; crenarchaea, heterotet	99.36
1a79_A	171	TRNA endonuclease; 2.28A {Methanocaldococcus janna	99.36
3ajv_B	186	TRNA-splicing endonuclease; ENDA, archaea crenarch	99.24
3iey_B	153	NEQ261; protein heterodimer, endonuclease, hydrola	99.2
3ajv_A	190	Putative uncharacterized protein; ENDA, archaea cr	99.04
1r0v_A	305	ENDA, tRNA-intron endonuclease, intron endonucleas	98.88
4fz2_A	395	TRNA intron endonuclease; tRNA splicing endonuclea	98.81
1r0v_A	305	ENDA, tRNA-intron endonuclease, intron endonucleas	98.64
4fz2_A	395	TRNA intron endonuclease; tRNA splicing endonuclea	98.63
2ohc_A	289	TRNA-splicing endonuclease; intron, hydrolase; 2.5	97.79
2zyz_A	116	Putative uncharacterized protein PAE0789; crenarch	92.77

>2ohc_A TRNA-splicing endonuclease; intron, hydrolase; 2.50A {Thermoplasma acidophilum} PDB: 2ohe_A

Probab=99.44  E-value=2.6e-14  Score=128.61  Aligned_cols=80  Identities=16%  Similarity=0.267  Sum_probs=73.0

Q ss_pred             CCeEEEEcccCccee----eeeEEeCCeEEEehHHHHHHHhcCcEEEEcCCCcccCHHHHHHHHHhccCCCCccceeeeh
Q 027232           52 LGMAEVVEKKGKMWT----TTGIVRNGKTYCSIEETLFLAEIGALYLLDNNDLCLPLKEIYEKIANEKSGCSWELFEVYR  127 (226)
Q Consensus        52 ~~~a~v~~~rG~~~~----~~G~~~~~~l~L~peEALYL~ErG~L~l~~~~g~~LSlqe~y~l~~~~~~~~~~~kY~VY~  127 (226)
                      ..++.|++++|+++.    +||+.+++.|+|+|+||+||++||.|++.    .+||++++++.+       ++.+|.||+
T Consensus         8 ~~~~~v~~~~~~~~~~~~y~~G~~~~~~l~L~p~Ea~YLl~rg~l~i~----~~~~~~~~~~~~-------~~~~y~VY~   76 (289)
T 2ohc_A            8 SHVFFIEDGKSKNYIIGKYKIGYLSGDNLILDPYECLYLYFKGRISFQ----NSDSFRDLFDTV-------TFDRYVAYE   76 (289)
T ss_dssp             TEEEEESTTCCHHHHHHHHCCCEEETTEEECCHHHHHHHHHTTCEEES----STTHHHHHHHHS-------CHHHHHHHH
T ss_pred             CeEEEecCCCCCceEecceeeceEcCCEEEEcHHHHHHHHhcCCEEEe----cCCCHHHHHHhh-------hhhhEeehh
Confidence            456789999999999    99999999999999999999999999996    369999999765       699999999


Q ss_pred             hhhcCCeEEeecCCC
Q 027232          128 HLKSLGYIVGRHGVP  142 (226)
Q Consensus       128 ~Lkr~GYiV~R~~~~  142 (226)
                      +||++||.|++.+..
T Consensus        77 DLr~rG~~v~~~g~d   91 (289)
T 2ohc_A           77 ILKNKGYRVKEDSGL   91 (289)
T ss_dssp             HHHTTTCEEEEETTE
T ss_pred             hHHhCCceEeeCCcc
Confidence            999999999998753

>2cv8_A TRNA-splicing endonuclease; tRNA-intron endonuclease, structural genomics, NPPSFA; 2.80A {Sulfolobus tokodaii}

Probab=99.41  E-value=1.7e-14  Score=121.19  Aligned_cols=90  Identities=24%  Similarity=0.266  Sum_probs=72.9

Q ss_pred             EEEeCCCCeEEEEcccCcceeeeeEE-------eCCeEEEehHHHHHHHhcCcEEEEcCCCcccCHHHHHHHHHhccCCC
Q 027232           46 AHWNNELGMAEVVEKKGKMWTTTGIV-------RNGKTYCSIEETLFLAEIGALYLLDNNDLCLPLKEIYEKIANEKSGC  118 (226)
Q Consensus        46 a~W~pe~~~a~v~~~rG~~~~~~G~~-------~~~~l~L~peEALYL~ErG~L~l~~~~g~~LSlqe~y~l~~~~~~~~  118 (226)
                      .+|+++..+...  .+|.|++.+|..       .+.+|+|+||||+||+|+|.|.|. ++|.+||++++++.+.... +.
T Consensus        11 ~v~d~~~~~~L~--~~~~yG~~~g~~~p~~~~~~~~~L~Ls~eEA~yL~~~g~l~v~-d~~~~ls~~el~~~~~~~~-~~   86 (180)
T 2cv8_A           11 LIKNIEDARLIY--KMGYYGKPIGISKPKSAEEINSELILSLIEGVYLVKKGKLEIV-SNGERLDFERLYQIGVTQI-PR   86 (180)
T ss_dssp             EECCHHHHHHHH--HHHSCSEECC-----------CCEEEEHHHHHHHHHTTSCEEE-ETTEEECHHHHHHHHHHHS-TT
T ss_pred             EEEchHHHHHHH--HCCccceEcCCCCccccccCCceEEEeHHHHHHHHHCCCEEEe-eCCCCCCHHHHHHHHhhhc-cc
Confidence            367766654422  468888888753       246899999999999999999999 5678999999999998644 46


Q ss_pred             CccceeeehhhhcCCeEEeec
Q 027232          119 SWELFEVYRHLKSLGYIVGRH  139 (226)
Q Consensus       119 ~~~kY~VY~~Lkr~GYiV~R~  139 (226)
                      ++.+|.||+|||++||+|+..
T Consensus        87 f~~~y~VY~~Lr~~G~~v~~G  107 (180)
T 2cv8_A           87 FRILYSVYEDLREKGYVVRSG  107 (180)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEC
T ss_pred             HHHHhHHHHHHHhCCeEeccc
Confidence            999999999999999999987

>3iey_A TRNA-splicing endonuclease; protein heterodimer, endonuclease, hydrolase, nuclease, tRNA processing, hydrolase-RNA binding protein complex; 2.11A {Nanoarchaeum equitans}

Probab=99.39  E-value=6.6e-14  Score=115.51  Aligned_cols=66  Identities=20%  Similarity=0.297  Sum_probs=53.9

Q ss_pred             eCCeEEEehHHHHHHHhcCcEEEEcCCCcccCHHHHHHHHHhccCCCCccceeeehhhhcCCeEEeec
Q 027232           72 RNGKTYCSIEETLFLAEIGALYLLDNNDLCLPLKEIYEKIANEKSGCSWELFEVYRHLKSLGYIVGRH  139 (226)
Q Consensus        72 ~~~~l~L~peEALYL~ErG~L~l~~~~g~~LSlqe~y~l~~~~~~~~~~~kY~VY~~Lkr~GYiV~R~  139 (226)
                      .-..|+|+||||+||+|+|+|+|. .+|.+||++++++++.+. +..++.+|.||+|||++||+|+..
T Consensus        11 ~~e~L~Ls~~EA~YL~~~G~L~v~-~~~~~ls~~el~~~~~~~-~~~f~~~y~vY~dLr~rG~~vk~G   76 (154)
T 3iey_A           11 LVDDKELPLIEAYYLLDKGELEVY-EDDKKLSKEEFLKKCLTY-DERFLIRYKAYKELRDKGYTLGTA   76 (154)
T ss_dssp             ECC--CEEHHHHHHHHHHTSCCCC-SCCC----HHHHHHHHHH-CTTHHHHHHHHHHHHHTTCEEEEE
T ss_pred             ccceEEEcHHHHHHHHHCCCEEEE-ECCCcCCHHHHHHHHHhc-CccHHHHHHHHHHHHHCCcEECCC
Confidence            347899999999999999999998 468899999999999864 356999999999999999999977

>2zyz_B TRNA-splicing endonuclease; crenarchaea, heterotetramer, RNA PROC endonuclease, hydrolase, tRNA processing; 1.70A {Pyrobaculum aerophilum}

Probab=99.36  E-value=2.9e-13  Score=114.02  Aligned_cols=92  Identities=21%  Similarity=0.247  Sum_probs=74.6

Q ss_pred             EEEEeCCCCeEEEEcccCcceeeeeEEe---------CCeEEEehHHHHHHHhcCcEEEEcCCCcccCHHHHHHHHHhcc
Q 027232           45 KAHWNNELGMAEVVEKKGKMWTTTGIVR---------NGKTYCSIEETLFLAEIGALYLLDNNDLCLPLKEIYEKIANEK  115 (226)
Q Consensus        45 ~a~W~pe~~~a~v~~~rG~~~~~~G~~~---------~~~l~L~peEALYL~ErG~L~l~~~~g~~LSlqe~y~l~~~~~  115 (226)
                      ..+|+++..+...  .+|.|++-.|...         +.+|+|+||||+||+|+|.|.|.+.+|.+||++++++.+... 
T Consensus        10 v~v~d~~~~~~L~--~~~~~G~~~g~~~p~~~~~~~~~~~L~Ls~eEa~yL~~~g~l~v~d~~~~~ls~~el~~~~~~~-   86 (183)
T 2zyz_B           10 VIVEDVEFARRLY--KEGFYGRFLGYDKVKRDEVEKINAPLILGLYEALYLAEKGRLKVMGEDGREVAPEELAALGRER-   86 (183)
T ss_dssp             EEECCHHHHHHHH--HTTCCSEETTCCSCCGGGGGGCCSCEEEEHHHHHHHHHTTSCEEECTTSCEECHHHHHHHHHHH-
T ss_pred             EEEEccHHHHHHH--HCCccceECCCCCCCCcccccCcceEEeeHHHHHHHHHCCCEEEECCCCCcCCHHHHHHHHhhh-
Confidence            3456655433222  4677777777331         378999999999999999999998888999999999998764 


Q ss_pred             CCCCccceeeehhhhcCCeEEeec
Q 027232          116 SGCSWELFEVYRHLKSLGYIVGRH  139 (226)
Q Consensus       116 ~~~~~~kY~VY~~Lkr~GYiV~R~  139 (226)
                      .+.++.+|.||+|||++||+|+..
T Consensus        87 ~~~f~~~y~vy~~lr~~G~~v~~G  110 (183)
T 2zyz_B           87 MRNFDEIYKIYKYFRDLGYVVKSG  110 (183)
T ss_dssp             STTHHHHHHHHHHHHHTTCEEEEC
T ss_pred             cccHHHHHHHHHHHHHCCeEeccc
Confidence            446999999999999999999987

>1a79_A TRNA endonuclease; 2.28A {Methanocaldococcus jannaschii} SCOP: c.52.2.1 d.75.1.1

Probab=99.36  E-value=4.8e-13  Score=111.53  Aligned_cols=72  Identities=28%  Similarity=0.364  Sum_probs=62.0

Q ss_pred             eeeEEeCCeEEEehHHHHHHHhcCcEEEEcCCCcccCHHHHHHHHHhccCCCCccceeeehhhhcCCeEEeec
Q 027232           67 TTGIVRNGKTYCSIEETLFLAEIGALYLLDNNDLCLPLKEIYEKIANEKSGCSWELFEVYRHLKSLGYIVGRH  139 (226)
Q Consensus        67 ~~G~~~~~~l~L~peEALYL~ErG~L~l~~~~g~~LSlqe~y~l~~~~~~~~~~~kY~VY~~Lkr~GYiV~R~  139 (226)
                      .+|+..+..|.|+||||+||+++|.|+|.+.+..+||++++++.+.... +.++.+|.||+|||++||+|+..
T Consensus        26 ~yG~~~~~~L~Ls~~Ea~yL~~~g~l~v~~~~~~~l~~~el~~~~~~~~-~~f~~~y~VY~dLr~rG~~v~~G   97 (171)
T 1a79_A           26 HYGNVEGNFLSLSLVEALYLINLGWLEVKYKDNKPLSFEELYEYARNVE-ERLCLKYLVYKDLRTRGYIVKTG   97 (171)
T ss_dssp             TCSEECSSCEEEEHHHHHHHHHHTCEEEECSSSSCCCHHHHHHHHHHHC-TTHHHHHHHHHHHHHTTCEEEEC
T ss_pred             cCceEcCCeEEEeHHHHHHHHHcCCEEEEeCCCCCCCHHHHHHHHHhcc-ccHHHHhHHHHHHHHCCeEeccc
Confidence            4455556999999999999999999999965445599999999988644 35899999999999999999987

>3ajv_B TRNA-splicing endonuclease; ENDA, archaea crenarch hydrolase; 1.70A {Aeropyrum pernix} PDB: 3p1z_B

Probab=99.24  E-value=3.4e-12  Score=107.94  Aligned_cols=99  Identities=18%  Similarity=0.210  Sum_probs=75.4

Q ss_pred             ceeecCCeEEEEEeCCCCeEEEEcccCcceeeeeEEe------CCeEEEehHHHHHHHhcCcEEEEcCCCcccCHHHHHH
Q 027232           36 KLQFRKDISKAHWNNELGMAEVVEKKGKMWTTTGIVR------NGKTYCSIEETLFLAEIGALYLLDNNDLCLPLKEIYE  109 (226)
Q Consensus        36 R~~~~k~~s~a~W~pe~~~a~v~~~rG~~~~~~G~~~------~~~l~L~peEALYL~ErG~L~l~~~~g~~LSlqe~y~  109 (226)
                      ++....+. ..+|+++..+...  .+|.|++-.|...      +..|.|+||||+||+++|.|.|.+.+|.+||++++++
T Consensus        11 ~~~l~~~~-v~v~d~~~~~~L~--~~~~yG~~~g~~~p~~~~~~~~L~Ls~~Ea~yL~~~g~l~v~~~~~~~ls~~el~~   87 (186)
T 3ajv_B           11 SGVLIGDS-VLVTDVEQARSLY--SCGYYGQPLDVEKPRGADFEGPLRLSLIESLYLAEKGVLEVAKPDGSSVGVEDLRT   87 (186)
T ss_dssp             EEEEETTE-EEECCHHHHHHHH--HTTCCSEESSCSSCSTTCCCCCEEEEHHHHHHHHHTTSEEEECTTSCEECHHHHHH
T ss_pred             eEEEECCE-EEEEccHHHHHHH--HCCccceECCCCCCCccCCCceEEEeHHHHHHHHHCCCEEEECCCCCcCCHHHHHH
Confidence            34444333 3466665543322  5677777777331      4789999999999999999999977789999999999


Q ss_pred             HHHhccCCCCccceeeehhhhcCCeEEeec
Q 027232          110 KIANEKSGCSWELFEVYRHLKSLGYIVGRH  139 (226)
Q Consensus       110 l~~~~~~~~~~~kY~VY~~Lkr~GYiV~R~  139 (226)
                      . .. ....++.+|.||+|||++||+|+..
T Consensus        88 ~-~~-~~~~f~~~y~VY~dLr~rG~~v~~G  115 (186)
T 3ajv_B           88 A-VR-GNPRFSMLYNIYRDLRERGFVVRSG  115 (186)
T ss_dssp             H-HH-TSHHHHHHHHHHHHHHHTTCEEEEC
T ss_pred             H-hh-ccchHHHHhhHHHHHHhCceEeccc
Confidence            8 32 3345899999999999999999977

>3iey_B NEQ261; protein heterodimer, endonuclease, hydrolase, nuclease, tRNA processing, hydrolase-RNA binding protein complex; 2.11A {Nanoarchaeum equitans} PDB: 3if0_X

Probab=99.20  E-value=8.4e-13  Score=108.80  Aligned_cols=73  Identities=22%  Similarity=0.177  Sum_probs=64.1

Q ss_pred             eeeEEeCCeEEEehHHHHHHHhcCcEEEEcCCCcccCHHHHHHHHHhccCCCCccceeeehhhhcCCeEEeecCCCc
Q 027232           67 TTGIVRNGKTYCSIEETLFLAEIGALYLLDNNDLCLPLKEIYEKIANEKSGCSWELFEVYRHLKSLGYIVGRHGVPW  143 (226)
Q Consensus        67 ~~G~~~~~~l~L~peEALYL~ErG~L~l~~~~g~~LSlqe~y~l~~~~~~~~~~~kY~VY~~Lkr~GYiV~R~~~~w  143 (226)
                      .+|+..++.|.|+|+||+||+ +|+|+|.  +|.+||++++.+.+.... .-++.+|.||+|||++||+|+..+..+
T Consensus        12 ~~G~~~~~~L~Ls~~EA~yL~-~g~l~v~--~~~~l~~~~l~~~~~~~~-~~F~~~y~VY~dLR~rG~~vk~GG~DF   84 (153)
T 3iey_B           12 YLGYNMGNYIKISEPELLFVL-RNKPQIK--DRLKLDEKTIIKEGVKKY-KNFWEIYYTVKDLILRGYRVRFDGFFI   84 (153)
T ss_dssp             TCSEECSSSEECCHHHHHHHH-HHCTHHH--HHHTCCHHHHHHHHHHHC-TTHHHHHHHHHHHHHTTCEEEECSSSE
T ss_pred             eeeeEcCCEEEECHHHHHHHh-cCCEEec--cCCcCCHHHHHHHHHhcC-cchhhhhHHHHHHHHCCCEEeeCCCeE
Confidence            479999999999999999999 9999983  577899999999988644 458999999999999999999986543

>3ajv_A Putative uncharacterized protein; ENDA, archaea crenarch hydrolase; 1.70A {Aeropyrum pernix} PDB: 3p1z_A

Probab=99.04  E-value=5.9e-11  Score=101.02  Aligned_cols=66  Identities=24%  Similarity=0.184  Sum_probs=57.1

Q ss_pred             eeeEEeCCeEEEehHHHHHHHhcCcEEEEcCCCcccCHHHHHHHHHhccCCCCccceeeehhhhcCCeEEeecC
Q 027232           67 TTGIVRNGKTYCSIEETLFLAEIGALYLLDNNDLCLPLKEIYEKIANEKSGCSWELFEVYRHLKSLGYIVGRHG  140 (226)
Q Consensus        67 ~~G~~~~~~l~L~peEALYL~ErG~L~l~~~~g~~LSlqe~y~l~~~~~~~~~~~kY~VY~~Lkr~GYiV~R~~  140 (226)
                      .+|...++.  |+|+||+||+++|.|++    +..++++++++.+..  .+.+..+|.||+|||++||+|+...
T Consensus        58 ~yG~~~~~~--Ls~vEAlYL~~~G~L~v----~~~~~~~eL~~~~~~--~~~f~~kY~VYkDLR~RGy~Vk~G~  123 (190)
T 3ajv_A           58 RIGYLRKGR--LEPLEAAYQASRGMLCM----GETRGWAAAVEVIAG--LGLSLDTALVYFDLRRKGRKPLVGV  123 (190)
T ss_dssp             HHTSEETTE--ECHHHHHHHHHHTCEEE----TTBCHHHHHHHHHHH--TTCCHHHHHHHHHHHHTTCCCEECS
T ss_pred             ccccccCCe--ECHHHHHHHHhcCcEee----cCCCCHHHHHHHHhh--CCCcceEEEeHHHHHhCCCEEeecC
Confidence            367777777  99999999999999987    346899999998875  3368999999999999999999875

>1r0v_A ENDA, tRNA-intron endonuclease, intron endonuclease; RNA splicing, X-RAY crystallography, translati hydrolase; 2.00A {Archaeoglobus fulgidus} SCOP: c.52.2.1 c.52.2.1 d.75.1.1 PDB: 1r11_A 1rlv_A 2gjw_A* 3p1y_A

Probab=98.88  E-value=9.8e-10  Score=99.43  Aligned_cols=66  Identities=30%  Similarity=0.457  Sum_probs=56.2

Q ss_pred             eeEEeCCeEEEehHHHHHHHhcCcEEEEcCCCcccCHHHHHHHHHhccCCCCccceeeehhhhcCCeEEeec
Q 027232           68 TGIVRNGKTYCSIEETLFLAEIGALYLLDNNDLCLPLKEIYEKIANEKSGCSWELFEVYRHLKSLGYIVGRH  139 (226)
Q Consensus        68 ~G~~~~~~l~L~peEALYL~ErG~L~l~~~~g~~LSlqe~y~l~~~~~~~~~~~kY~VY~~Lkr~GYiV~R~  139 (226)
                      +|+..+..|.|+|+||+||+++|.|+|. ..|    .+++.+.+...++ .++.+|.||+|||++||+|+..
T Consensus       171 yG~~~~~~L~Lsl~EA~yL~~~g~L~v~-~~~----~~el~~~~~~~~~-~f~~~y~VY~dLR~rG~vvk~G  236 (305)
T 1r0v_A          171 YGSEKGDLVTLSLIESLYLLDLGKLNLL-NAD----REELVKRAREVER-NFDRRYEVYRNLKERGFVVKTG  236 (305)
T ss_dssp             CSEEETTEEEECHHHHHHHHHHTCEEET-TCC----HHHHHHHHHHHST-THHHHHHHHHHHHHTTCEEEEC
T ss_pred             CCcccCCeeEEcHHHHHHHHhcCcEEEe-cCC----HHHHHHHHhhcCc-chhhhhhHHHHHHHCCCEeccC
Confidence            4555559999999999999999999997 333    3899998876444 5999999999999999999987

>4fz2_A TRNA intron endonuclease; tRNA splicing endonuclease, hydrolase; 2.25A {Candidatus micrarchaeum acidiphilum}

Probab=98.81  E-value=2e-09  Score=100.32  Aligned_cols=71  Identities=20%  Similarity=0.302  Sum_probs=62.9

Q ss_pred             eeEEeCCeEEEehHHHHHHHhcCcEEEEcCCCcccCHHHHHHHHHhccCCCCccceeeehhhhcCCeEEeecC
Q 027232           68 TGIVRNGKTYCSIEETLFLAEIGALYLLDNNDLCLPLKEIYEKIANEKSGCSWELFEVYRHLKSLGYIVGRHG  140 (226)
Q Consensus        68 ~G~~~~~~l~L~peEALYL~ErG~L~l~~~~g~~LSlqe~y~l~~~~~~~~~~~kY~VY~~Lkr~GYiV~R~~  140 (226)
                      +|+.+++++.|++.||+||+++|.+.+.+.+|..++++++.+.+...  .-+..+|.||++||.+||+|++.+
T Consensus        30 FGrp~g~~L~LS~~EAaYLl~~~krl~vd~~gk~ls~eelle~~~~~--r~f~~kylVYkDLReRG~~Vk~~g  100 (395)
T 4fz2_A           30 FGEYRAGKLMLEVEEGLYLVDVRKAACTDENSKPVSFNDIAGVFIKR--KKLMARYFTFKDWRDRGLIIKSPG  100 (395)
T ss_dssp             CSEEETTEEEECHHHHHHHHHHSCCEEECTTSCBCCHHHHHHHTTTS--TTHHHHHHHHHHHHHTTCCEESCC
T ss_pred             CCCccCCceEEEehhhhHHHHhCCeeeeccCCCcCCHHHHHHHHHhc--hhHHHHHHHHHHHHhcCccccccc
Confidence            67888899999999999999999988887889999999999877643  358999999999999999999754

>1r0v_A ENDA, tRNA-intron endonuclease, intron endonuclease; RNA splicing, X-RAY crystallography, translati hydrolase; 2.00A {Archaeoglobus fulgidus} SCOP: c.52.2.1 c.52.2.1 d.75.1.1 PDB: 1r11_A 1rlv_A 2gjw_A* 3p1y_A

Probab=98.64  E-value=2.1e-09  Score=97.32  Aligned_cols=65  Identities=20%  Similarity=0.247  Sum_probs=20.7

Q ss_pred             eeeEEeCCeEEEehHHHHHHHhcCcEEEEcCCCcccCHHHHHHHHHhccCCCCccceeeehhhhcCCeEEeec
Q 027232           67 TTGIVRNGKTYCSIEETLFLAEIGALYLLDNNDLCLPLKEIYEKIANEKSGCSWELFEVYRHLKSLGYIVGRH  139 (226)
Q Consensus        67 ~~G~~~~~~l~L~peEALYL~ErG~L~l~~~~g~~LSlqe~y~l~~~~~~~~~~~kY~VY~~Lkr~GYiV~R~  139 (226)
                      -+|+..++.+.|+|+||+||+.+|. ++.  ++  |  ++++..+.... ..++.+|.||+|||++||+|+..
T Consensus        19 ~yG~~~~~~l~L~~~Ea~YL~~~~~-~i~--~~--~--~~l~~~~~~~~-~~~~~~y~VY~DLR~RGy~v~~g   83 (305)
T 1r0v_A           19 GFGVKRGDKIYLHPLEVVYLQIKGI-ESF--GE--L--EDVLSWAESRM-EDFSTYYFVYEDLRDRGNKVKIQ   83 (305)
T ss_dssp             ---------------------------------------------------CHHHHHHHHHHHHHTTCCCEEE
T ss_pred             cCCcccCCEEEEeHHHHHHHHHcCC-chH--hh--H--HHHHHHHHhcc-cchhhheehHHHHHhCCcEeeeC
Confidence            4688888999999999999999999 886  33  4  89998886533 35899999999999999999877

>4fz2_A TRNA intron endonuclease; tRNA splicing endonuclease, hydrolase; 2.25A {Candidatus micrarchaeum acidiphilum}

Probab=98.63  E-value=1.4e-08  Score=94.57  Aligned_cols=61  Identities=23%  Similarity=0.412  Sum_probs=54.2

Q ss_pred             CCeEEEehHHHHHHHhcCcEEEEcCCCcccCHHHHHHHHHhccCCCCccceeeehhhhcCCeEEeec
Q 027232           73 NGKTYCSIEETLFLAEIGALYLLDNNDLCLPLKEIYEKIANEKSGCSWELFEVYRHLKSLGYIVGRH  139 (226)
Q Consensus        73 ~~~l~L~peEALYL~ErG~L~l~~~~g~~LSlqe~y~l~~~~~~~~~~~kY~VY~~Lkr~GYiV~R~  139 (226)
                      ...+.|+++||+||+++|.|+|.     .+|.+++.+.+.... ..+..+|.||+|||.+||+|+..
T Consensus       166 ~~~LqLSlvEA~YL~~~G~L~V~-----~~s~~el~~~~~~~~-~~F~~kY~VY~dLR~rG~vvksG  226 (395)
T 4fz2_A          166 GNLNKLDIYETLFLIDMGVISIK-----NFTRAQIVNIASARR-TDIMKLYDVYKDWRTKGYVVKTG  226 (395)
T ss_dssp             CCCEEECHHHHHHHHHTTCEEES-----SCCHHHHHHHHHHHC-TTHHHHHHHHHHHHTTTCEEEEE
T ss_pred             CcceeecHHHHHHHHhCCCEEee-----cCCHHHHHHHHhhcc-hhhhhhhHHHHHHHHCCCEeCcC
Confidence            56799999999999999999996     389999999988654 46899999999999999999954

>2ohc_A TRNA-splicing endonuclease; intron, hydrolase; 2.50A {Thermoplasma acidophilum} PDB: 2ohe_A

Probab=97.79  E-value=9.5e-06  Score=72.89  Aligned_cols=65  Identities=14%  Similarity=-0.018  Sum_probs=45.2

Q ss_pred             cceeecCCeEEEEEeCCCCeEEEEcccCcceeeeeEEeCCeEEEehHHHHHHHhcCcEEEEcCCCcccCHHHHHHHHHhc
Q 027232           35 SKLQFRKDISKAHWNNELGMAEVVEKKGKMWTTTGIVRNGKTYCSIEETLFLAEIGALYLLDNNDLCLPLKEIYEKIANE  114 (226)
Q Consensus        35 ~R~~~~k~~s~a~W~pe~~~a~v~~~rG~~~~~~G~~~~~~l~L~peEALYL~ErG~L~l~~~~g~~LSlqe~y~l~~~~  114 (226)
                      .++....+.+. +|++      +   +|.|++.+|   +.+| |+++||+||++                       . .
T Consensus       156 ~~~~l~~~rv~-v~d~------L---~~~yG~~~~---~~~L-Lsl~Ea~yL~~-----------------------~-~  197 (289)
T 2ohc_A          156 APVVRMGGRSF-GAGD------L---EWWIGTAFH---GFRL-LTENEANYISG-----------------------N-H  197 (289)
T ss_dssp             CCCEEETTEEE-EETT------S---CTTSSEEET---TEEE-ECHHHHHHHTT-----------------------C-T
T ss_pred             ceEEEeCCEEE-EEch------h---hhhcCCcCC---Cccc-CCHHHHHHHhh-----------------------c-c
Confidence            34444444443 6776      1   666666665   4789 99999999999                       1 1


Q ss_pred             cCCCCccceeeehhhhcCCeEEeecC
Q 027232          115 KSGCSWELFEVYRHLKSLGYIVGRHG  140 (226)
Q Consensus       115 ~~~~~~~kY~VY~~Lkr~GYiV~R~~  140 (226)
                      .++.+   |.||+|||++||+|+..-
T Consensus       198 ~~~~f---y~VY~dLR~rG~vvk~G~  220 (289)
T 2ohc_A          198 SASQV---DMVYSDLVGRGCIVKTGF  220 (289)
T ss_dssp             TSSHH---HHHHHHHHHTTCEEEECG
T ss_pred             cchhH---HHHHHHHHHCCCEEcccc
Confidence            11123   999999999999999765

>2zyz_A Putative uncharacterized protein PAE0789; crenarchaea, heterotetramer, RNA PROC endonuclease, hydrolase, tRNA processing; 1.70A {Pyrobaculum aerophilum}

Probab=92.77  E-value=0.02  Score=44.80  Aligned_cols=21  Identities=24%  Similarity=0.284  Sum_probs=19.1

Q ss_pred             CCccceeeehhhhcCCeEEee
Q 027232          118 CSWELFEVYRHLKSLGYIVGR  138 (226)
Q Consensus       118 ~~~~kY~VY~~Lkr~GYiV~R  138 (226)
                      ....+|.||++||++||+|+.
T Consensus        21 ~~~l~y~VYkDLR~RG~~vk~   41 (116)
T 2zyz_A           21 MDVLQEQVFKDLKSRGFKIIE   41 (116)
T ss_dssp             CCHHHHHHHHHHHTTTCEEEE
T ss_pred             ccceeeHHHHHHHHCCCcccE
Confidence            457789999999999999998

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	226
d1a79a2	74	Tetrameric tRNA splicing endonuclease, N-terminal	98.81
d1r0va2	91	Dimeric tRNA splicing endonuclease, domains 2 and	92.49
d1a79a1	97	Tetrameric tRNA splicing endonuclease, C-terminal	90.53
d1r11a3	58	Dimeric tRNA splicing endonuclease, domains 1 and	83.7
d1r0va3	75	Dimeric tRNA splicing endonuclease, domains 1 and	82.66

>d1a79a2 d.75.1.1 (A:9-82) Tetrameric tRNA splicing endonuclease, N-terminal domain {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a+b)
fold: MutS N-terminal domain-like
superfamily: tRNA-intron endonuclease N-terminal domain-like
family: tRNA-intron endonuclease N-terminal domain-like
domain: Tetrameric tRNA splicing endonuclease, N-terminal domain
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.81  E-value=2.6e-09  Score=76.60  Aligned_cols=46  Identities=28%  Similarity=0.354  Sum_probs=42.4

Q ss_pred             eeEEeCCeEEEehHHHHHHHhcCcEEEEcCCCcccCHHHHHHHHHh
Q 027232           68 TGIVRNGKTYCSIEETLFLAEIGALYLLDNNDLCLPLKEIYEKIAN  113 (226)
Q Consensus        68 ~G~~~~~~l~L~peEALYL~ErG~L~l~~~~g~~LSlqe~y~l~~~  113 (226)
                      +|...+++|.|+|.||+||+++|.|+|.+.+|.+||++++++++..
T Consensus        27 YG~~~~~~l~Ls~~EalYLl~~gkl~v~~~~gk~lsfe~l~~~a~~   72 (74)
T d1a79a2          27 YGNVEGNFLSLSLVEALYLINLGWLEVKYKDNKPLSFEELYEYARN   72 (74)
T ss_dssp             CSEECSSCEEEEHHHHHHHHHHTCEEEECSSSSCCCHHHHHHHHHH
T ss_pred             CCCCcCCeEEEeHHHHHHHHhcCcEEEecCCCCCCCHHHHHHHHhc
Confidence            4788889999999999999999999999788999999999998764

>d1r0va2 c.52.2.1 (A:215-305) Dimeric tRNA splicing endonuclease, domains 2 and 4 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: Restriction endonuclease-like
superfamily: tRNA-intron endonuclease catalytic domain-like
family: tRNA-intron endonuclease catalytic domain-like
domain: Dimeric tRNA splicing endonuclease, domains 2 and 4
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=92.49  E-value=0.0081  Score=43.20  Aligned_cols=27  Identities=37%  Similarity=0.573  Sum_probs=21.9

Q ss_pred             CccceeeehhhhcCCeEEeec---CCCcee
Q 027232          119 SWELFEVYRHLKSLGYIVGRH---GVPWIV  145 (226)
Q Consensus       119 ~~~kY~VY~~Lkr~GYiV~R~---~~~w~~  145 (226)
                      |..+|.||++||++||+|+..   +..|..
T Consensus         2 F~~~y~vy~~lr~~G~vv~~G~KfG~df~v   31 (91)
T d1r0va2           2 FDRRYEVYRNLKERGFVVKTGFKFGSEFRV   31 (91)
T ss_dssp             HHHHHHHHHHHHHTTCEEEECGGGTSSEEE
T ss_pred             hHHHhHHHHHHHHCCCEECCCcccCccEEE
Confidence            567999999999999999977   444443

>d1a79a1 c.52.2.1 (A:83-179) Tetrameric tRNA splicing endonuclease, C-terminal domain {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: Restriction endonuclease-like
superfamily: tRNA-intron endonuclease catalytic domain-like
family: tRNA-intron endonuclease catalytic domain-like
domain: Tetrameric tRNA splicing endonuclease, C-terminal domain
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=90.53  E-value=0.023  Score=40.93  Aligned_cols=21  Identities=33%  Similarity=0.535  Sum_probs=18.6

Q ss_pred             CccceeeehhhhcCCeEEeec
Q 027232          119 SWELFEVYRHLKSLGYIVGRH  139 (226)
Q Consensus       119 ~~~kY~VY~~Lkr~GYiV~R~  139 (226)
                      +.-+|.||++||++||+|+..
T Consensus         3 ~~~ky~Vy~dLr~rG~~v~~G   23 (97)
T d1a79a1           3 LCLKYLVYKDLRTRGYIVKTG   23 (97)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEC
T ss_pred             hhhhhHHHHHHHHCCCEEeec
Confidence            467899999999999999865

>d1r11a3 d.75.1.1 (A:3-60) Dimeric tRNA splicing endonuclease, domains 1 and 3 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: MutS N-terminal domain-like
superfamily: tRNA-intron endonuclease N-terminal domain-like
family: tRNA-intron endonuclease N-terminal domain-like
domain: Dimeric tRNA splicing endonuclease, domains 1 and 3
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=83.70  E-value=0.28  Score=31.39  Aligned_cols=25  Identities=28%  Similarity=0.389  Sum_probs=22.2

Q ss_pred             eeeeEEeCCeEEEehHHHHHHHhcC
Q 027232           66 TTTGIVRNGKTYCSIEETLFLAEIG   90 (226)
Q Consensus        66 ~~~G~~~~~~l~L~peEALYL~ErG   90 (226)
                      +-+|.-+++++||+|.|.+||.=+|
T Consensus        16 rgfgvkrgdkiylhplevvylqikg   40 (58)
T d1r11a3          16 RGFGVKRGDKIYLHPLEVVYLQIKG   40 (58)
T ss_dssp             TTCSEESSSEEEECHHHHHHHHHHT
T ss_pred             cccccccCCEEEeeeeeEEEEEEec
Confidence            4468889999999999999999888

>d1r0va3 d.75.1.1 (A:140-214) Dimeric tRNA splicing endonuclease, domains 1 and 3 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: MutS N-terminal domain-like
superfamily: tRNA-intron endonuclease N-terminal domain-like
family: tRNA-intron endonuclease N-terminal domain-like
domain: Dimeric tRNA splicing endonuclease, domains 1 and 3
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=82.66  E-value=0.64  Score=31.03  Aligned_cols=52  Identities=19%  Similarity=0.286  Sum_probs=36.3

Q ss_pred             EEEcccCccee-eeeEEeCCeEEEehHHHHHHHhcCcEEEEcCCCcccCHHHHHHHHH
Q 027232           56 EVVEKKGKMWT-TTGIVRNGKTYCSIEETLFLAEIGALYLLDNNDLCLPLKEIYEKIA  112 (226)
Q Consensus        56 ~v~~~rG~~~~-~~G~~~~~~l~L~peEALYL~ErG~L~l~~~~g~~LSlqe~y~l~~  112 (226)
                      .++++.--|-+ .+|..+++-+-|+..|.|||++.|.|.+..     -.-+++...+.
T Consensus        19 vitkqteifsryfygsekgdlvtlslieslylldlgklnlln-----adreelvkrar   71 (75)
T d1r0va3          19 VITKQTEIFSRYFYGSEKGDLVTLSLIESLYLLDLGKLNLLN-----ADREELVKRAR   71 (75)
T ss_dssp             EEESCTHHHHTTCCSEEETTEEEECHHHHHHHHHHTCEEETT-----CCHHHHHHHHH
T ss_pred             eeehhhhHHHHHhccCccCCEeehHHHHHHHHHccccccccc-----cCHHHHHHHHH
Confidence            34444433333 257788999999999999999999999972     34556555443