Your job contains 1 sequence.
>027234
MGFSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVGLEMDLPVIMMCAH
GSKEVVMKGVTHDACDYLTKPVRIEELKNIWQHVVRKRKNERKDLEQSGSVEGGAQQPKP
FEESDDSYSVNEGTSNSRKDEEEEAEKRLKKPRLVWSVELHQQFVSAVKELGFDKAGPKK
ILELMNIPGLTRENVASHLQKHRLYLSRLSGVSPQQGNSFVSSNIG
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 027234
(226 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2130095 - symbol:RR2 "response regulator 2" sp... 737 5.9e-73 1
TAIR|locus:2040194 - symbol:RR12 "response regulator 12" ... 620 1.5e-60 1
TAIR|locus:2008585 - symbol:ARR11 "response regulator 11"... 583 1.2e-56 1
TAIR|locus:2116587 - symbol:RR10 "response regulator 10" ... 575 8.6e-56 1
TAIR|locus:2065398 - symbol:RR14 "response regulator 14" ... 436 4.6e-41 1
TAIR|locus:2093668 - symbol:RR1 "response regulator 1" sp... 429 8.3e-40 1
UNIPROTKB|Q7Y0W3 - symbol:Q7Y0W3 "Two-component response ... 354 2.3e-32 1
UNIPROTKB|Q7Y0W5 - symbol:EHD1 "Two-component response re... 354 2.3e-32 1
TAIR|locus:2155954 - symbol:APRR4 "pseudo-response regula... 330 7.9e-30 1
TAIR|locus:2141020 - symbol:APRR2 species:3702 "Arabidops... 165 2.3e-22 2
TAIR|locus:2148348 - symbol:BOA "AT5G59570" species:3702 ... 241 2.1e-20 1
TAIR|locus:2103247 - symbol:AT3G10760 "AT3G10760" species... 231 2.5e-19 1
TAIR|locus:2175364 - symbol:AT5G05090 "AT5G05090" species... 224 1.4e-18 1
TAIR|locus:2058445 - symbol:MYBC1 "AT2G40970" species:370... 221 2.8e-18 1
TAIR|locus:2167639 - symbol:GLK2 "AT5G44190" species:3702... 192 1.2e-14 1
UNIPROTKB|Q5Z5I4 - symbol:GLK1 "Probable transcription fa... 191 2.5e-14 1
TAIR|locus:2044376 - symbol:PRR9 "pseudo-response regulat... 171 4.0e-12 1
TAIR|locus:2095933 - symbol:MYR2 species:3702 "Arabidopsi... 168 5.8e-12 1
TAIR|locus:2085984 - symbol:AT3G25790 species:3702 "Arabi... 166 7.4e-12 1
TAIR|locus:2063746 - symbol:AT2G03500 "AT2G03500" species... 166 1.2e-11 1
TAIR|locus:2151206 - symbol:PRR7 "pseudo-response regulat... 169 1.4e-11 1
TAIR|locus:2205339 - symbol:HRS1 "HYPERSENSITIVITY TO LOW... 164 3.4e-11 1
TAIR|locus:2163198 - symbol:TOC1 "TIMING OF CAB EXPRESSIO... 163 2.3e-10 1
TAIR|locus:2172394 - symbol:MYR1 "myb-related protein 1" ... 161 2.5e-10 1
TAIR|locus:2031210 - symbol:AT1G25550 species:3702 "Arabi... 159 4.0e-10 1
TAIR|locus:2157146 - symbol:AT5G45580 species:3702 "Arabi... 154 9.9e-10 1
TIGR_CMR|GSU_1495 - symbol:GSU_1495 "sigma-54 dependent D... 158 1.1e-09 1
TAIR|locus:2042927 - symbol:AT2G38300 "AT2G38300" species... 155 1.6e-09 1
TAIR|locus:2206415 - symbol:APL "ALTERED PHLOEM DEVELOPME... 155 1.8e-09 1
TAIR|locus:2063141 - symbol:AT2G40260 "AT2G40260" species... 155 2.5e-09 1
TAIR|locus:2093726 - symbol:AT3G24120 species:3702 "Arabi... 152 3.0e-09 1
TAIR|locus:2026739 - symbol:AT1G69580 species:3702 "Arabi... 151 6.1e-09 1
TAIR|locus:2026863 - symbol:AT1G68670 species:3702 "Arabi... 150 9.3e-09 1
TAIR|locus:2087740 - symbol:AT3G12730 species:3702 "Arabi... 145 1.1e-08 1
TIGR_CMR|BA_1119 - symbol:BA_1119 "DNA-binding response r... 144 1.4e-08 1
TAIR|locus:2119425 - symbol:UNE16 "unfertilized embryo sa... 147 1.4e-08 1
TIGR_CMR|GSU_0008 - symbol:GSU_0008 "sensory box histidin... 150 1.9e-08 1
TAIR|locus:2115070 - symbol:AT4G37180 species:3702 "Arabi... 147 2.5e-08 1
TIGR_CMR|CPS_2786 - symbol:CPS_2786 "response regulator" ... 141 4.4e-08 1
TAIR|locus:2045761 - symbol:AT2G01060 species:3702 "Arabi... 142 6.1e-08 1
TAIR|locus:2041539 - symbol:AT2G42660 "AT2G42660" species... 140 7.6e-08 1
TIGR_CMR|DET_0232 - symbol:DET_0232 "DNA-binding response... 138 7.8e-08 1
TAIR|locus:2148720 - symbol:PHL1 "AT5G29000" species:3702... 144 7.9e-08 1
TAIR|locus:2100880 - symbol:AT3G04450 species:3702 "Arabi... 144 9.0e-08 1
UNIPROTKB|Q4GZK8 - symbol:rr3 "Type A response regulator ... 124 9.1e-08 1
TIGR_CMR|GSU_1117 - symbol:GSU_1117 "response regulator" ... 124 9.1e-08 1
TAIR|locus:2051572 - symbol:AT2G06020 "AT2G06020" species... 141 9.4e-08 1
UNIPROTKB|Q9AE24 - symbol:rprY "Transcriptional regulator... 138 9.6e-08 1
TAIR|locus:2174063 - symbol:RR23 "response regulator 23" ... 95 1.1e-07 2
TIGR_CMR|GSU_0149 - symbol:GSU_0149 "sensor histidine kin... 142 1.2e-07 1
TAIR|locus:2199342 - symbol:APRR6 "pseudo-response regula... 146 1.2e-07 1
TAIR|locus:2010297 - symbol:AT1G49560 "AT1G49560" species... 141 1.2e-07 1
UNIPROTKB|P0AE67 - symbol:cheY species:83333 "Escherichia... 122 1.6e-07 1
TAIR|locus:2163852 - symbol:ATS "AT5G42630" species:3702 ... 138 1.8e-07 1
TIGR_CMR|GSU_2693 - symbol:GSU_2693 "response regulator" ... 121 2.0e-07 1
TAIR|locus:2089260 - symbol:AT3G13040 species:3702 "Arabi... 141 2.2e-07 1
TIGR_CMR|CPS_1260 - symbol:CPS_1260 "putative nitrate/nit... 132 2.9e-07 1
TAIR|locus:2028346 - symbol:KAN2 "AT1G32240" species:3702... 138 4.0e-07 1
TIGR_CMR|GSU_1129 - symbol:GSU_1129 "sigma-54 dependent D... 139 4.0e-07 1
TAIR|locus:2204518 - symbol:AT1G14600 "AT1G14600" species... 134 4.5e-07 1
TIGR_CMR|CPS_1426 - symbol:CPS_1426 "transcriptional regu... 133 5.4e-07 1
UNIPROTKB|Q4GZK2 - symbol:rr9 "Type A response regulator ... 129 6.3e-07 1
TIGR_CMR|SPO_1892 - symbol:SPO_1892 "C4-dicarboxylate tra... 137 6.9e-07 1
TAIR|locus:2038957 - symbol:AT2G20400 "AT2G20400" species... 136 7.5e-07 1
TAIR|locus:2041145 - symbol:AT2G02060 species:3702 "Arabi... 132 8.2e-07 1
UNIPROTKB|O53894 - symbol:mprA "Response regulator MprA" ... 130 9.6e-07 1
TIGR_CMR|BA_5275 - symbol:BA_5275 "DNA-binding response r... 129 1.1e-06 1
TAIR|locus:505006489 - symbol:KAN3 "AT4G17695" species:37... 133 1.1e-06 1
TIGR_CMR|BA_5504 - symbol:BA_5504 "DNA-binding response r... 129 1.2e-06 1
TIGR_CMR|DET_0135 - symbol:DET_0135 "DNA-binding response... 129 1.3e-06 1
TAIR|locus:2171427 - symbol:KAN "KANADI" species:3702 "Ar... 134 1.4e-06 1
UNIPROTKB|Q0J235 - symbol:RL9 "Probable transcription fac... 135 1.6e-06 1
UNIPROTKB|Q4KG71 - symbol:fleR "Sigma-54 dependent DNA-bi... 134 1.8e-06 1
TIGR_CMR|DET_0170 - symbol:DET_0170 "DNA-binding response... 128 1.8e-06 1
TAIR|locus:2139865 - symbol:PHR1 "phosphate starvation re... 133 1.8e-06 1
TIGR_CMR|BA_3900 - symbol:BA_3900 "lantibiotic biosynthes... 127 1.9e-06 1
TIGR_CMR|SPO_1679 - symbol:SPO_1679 "DNA-binding response... 128 2.0e-06 1
TIGR_CMR|BA_0585 - symbol:BA_0585 "DNA-binding response r... 127 2.0e-06 1
TIGR_CMR|BA_1312 - symbol:BA_1312 "DNA-binding response r... 127 2.0e-06 1
UNIPROTKB|P14375 - symbol:zraR species:83333 "Escherichia... 133 2.1e-06 1
TAIR|locus:2170199 - symbol:AT5G06800 species:3702 "Arabi... 132 2.1e-06 1
UNIPROTKB|Q9KT84 - symbol:luxO "Regulatory protein LuxO" ... 133 2.2e-06 1
TIGR_CMR|VC_1021 - symbol:VC_1021 "LuxO repressor protein... 133 2.2e-06 1
UNIPROTKB|Q06065 - symbol:atoC "AtoC transcriptional acti... 133 2.2e-06 1
UNIPROTKB|Q3JZR1 - symbol:csrR "DNA-binding response regu... 127 2.3e-06 1
UNIPROTKB|A5U0E5 - symbol:phoP "Putative two component sy... 128 2.3e-06 1
UNIPROTKB|P71814 - symbol:phoP "Possible two component sy... 128 2.3e-06 1
UNIPROTKB|Q48GE0 - symbol:fleR "Sigma-54 dependent DNA-bi... 133 2.3e-06 1
TIGR_CMR|BA_0571 - symbol:BA_0571 "DNA-binding response r... 126 2.8e-06 1
TIGR_CMR|CHY_0606 - symbol:CHY_0606 "DNA-binding response... 126 3.0e-06 1
UNIPROTKB|Q9KNI9 - symbol:VC_2749 "Nitrogen regulation pr... 132 3.1e-06 1
TIGR_CMR|VC_2749 - symbol:VC_2749 "nitrogen regulation pr... 132 3.1e-06 1
TIGR_CMR|GSU_1003 - symbol:GSU_1003 "nitrogen regulation ... 132 3.2e-06 1
UNIPROTKB|Q884Y0 - symbol:fleR "Sigma-54 dependent transc... 131 4.1e-06 1
UNIPROTKB|Q3ADA5 - symbol:cheY2 "Chemotaxis protein CheY"... 108 6.3e-06 1
TIGR_CMR|CHY_1032 - symbol:CHY_1032 "chemotaxis protein C... 108 6.3e-06 1
TIGR_CMR|CHY_1855 - symbol:CHY_1855 "sigma-54 dependent t... 129 6.5e-06 1
TIGR_CMR|GSU_0280 - symbol:GSU_0280 "transcriptional regu... 129 6.6e-06 1
TIGR_CMR|GSU_0451 - symbol:GSU_0451 "DNA-binding response... 123 6.9e-06 1
TIGR_CMR|CJE_1664 - symbol:CJE_1664 "DNA-binding response... 123 7.1e-06 1
WARNING: Descriptions of 143 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2130095 [details] [associations]
symbol:RR2 "response regulator 2" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS;IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0009736 "cytokinin
mediated signaling pathway" evidence=RCA;TAS] [GO:0009723 "response
to ethylene stimulus" evidence=IMP] [GO:0009735 "response to
cytokinin stimulus" evidence=IEP;IGI] [GO:0010150 "leaf senescence"
evidence=IMP] [GO:0009873 "ethylene mediated signaling pathway"
evidence=IMP] [GO:0010119 "regulation of stomatal movement"
evidence=IMP] [GO:0007623 "circadian rhythm" evidence=RCA]
[GO:0010029 "regulation of seed germination" evidence=RCA]
[GO:0031537 "regulation of anthocyanin metabolic process"
evidence=RCA] [GO:0048831 "regulation of shoot system development"
evidence=RCA] InterPro:IPR001005 InterPro:IPR001789
InterPro:IPR009057 Pfam:PF00072 Pfam:PF00249 PROSITE:PS50110
SMART:SM00448 GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0009873 GO:GO:0010119 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0003682 GO:GO:0010150 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0009736 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 EMBL:Z97340 EMBL:AL161543 InterPro:IPR017930
InterPro:IPR006447 TIGRFAMs:TIGR01557 PROSITE:PS51294 KO:K14491
eggNOG:COG2204 InterPro:IPR017053 PIRSF:PIRSF036392
ProtClustDB:CLSN2680844 EMBL:AB016472 EMBL:AJ005196 EMBL:DQ473518
EMBL:DQ473519 EMBL:DQ473520 EMBL:DQ473521 EMBL:AK175378
EMBL:AK175737 EMBL:AK175959 EMBL:AK176614 IPI:IPI00518324
PIR:D71427 PIR:T51247 RefSeq:NP_193346.4 UniGene:At.21955
ProteinModelPortal:Q9ZWJ9 SMR:Q9ZWJ9 IntAct:Q9ZWJ9 STRING:Q9ZWJ9
PaxDb:Q9ZWJ9 PRIDE:Q9ZWJ9 EnsemblPlants:AT4G16110.1 GeneID:827297
KEGG:ath:AT4G16110 GeneFarm:3921 TAIR:At4g16110 InParanoid:Q9ZWJ9
OMA:ILERMLM PhylomeDB:Q9ZWJ9 Genevestigator:Q9ZWJ9
GermOnline:AT4G16110 Uniprot:Q9ZWJ9
Length = 664
Score = 737 (264.5 bits), Expect = 5.9e-73, P = 5.9e-73
Identities = 158/232 (68%), Positives = 181/232 (78%)
Query: 3 FSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVGLEMDLPVIMMCAHGS 62
+ VTKCNRAE AL +LR NKNG+DIVISDVHMPDMDGFKLLE VGLEMDLPVIMM A S
Sbjct: 52 YRVTKCNRAESALSLLRKNKNGFDIVISDVHMPDMDGFKLLEHVGLEMDLPVIMMSADDS 111
Query: 63 KEVVMKGVTHDACDYLTKPVRIEELKNIWQHVVRKRKNERKDLEQSG-SVE--GGAQ--Q 117
K VV+KGVTH A DYL KPVRIE LKNIWQHVVRK++NE E SG S+E GG + Q
Sbjct: 112 KSVVLKGVTHGAVDYLIKPVRIEALKNIWQHVVRKKRNEWNVSEHSGGSIEDTGGDRDRQ 171
Query: 118 PKPFEESDD-SYSVNEGTS-NSRKDEEEEAEKR---------LKKPRLVWSVELHQQFVS 166
+ E++D+ S SVNEG +SRK +EEE + + LKKPR+VWSVELHQQFV+
Sbjct: 172 QQHREDADNNSSSVNEGNGRSSRKRKEEEVDDQGDDKEDSSSLKKPRVVWSVELHQQFVA 231
Query: 167 AVKELGFDKAGPKKILELMNIPGLTRENVASHLQKHRLYLSRLSGVSPQQGN 218
AV +LG DKA PKKILE+MN+PGLTRENVASHLQK+R+YL RL GVS QGN
Sbjct: 232 AVNQLGVDKAVPKKILEMMNVPGLTRENVASHLQKYRIYLRRLGGVSQHQGN 283
>TAIR|locus:2040194 [details] [associations]
symbol:RR12 "response regulator 12" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS] [GO:0009736
"cytokinin mediated signaling pathway" evidence=IGI;TAS]
[GO:0009735 "response to cytokinin stimulus" evidence=IGI]
[GO:0010380 "regulation of chlorophyll biosynthetic process"
evidence=IGI] [GO:0031537 "regulation of anthocyanin metabolic
process" evidence=IGI] [GO:0048367 "shoot system development"
evidence=IGI] [GO:0080022 "primary root development" evidence=IGI]
InterPro:IPR001005 InterPro:IPR001789 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00249 PROSITE:PS50110 SMART:SM00448
GO:GO:0005634 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 GO:GO:0003682 GO:GO:0010380
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0009736 GO:GO:0080022
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0048367
InterPro:IPR017930 InterPro:IPR006447 TIGRFAMs:TIGR01557
PROSITE:PS51294 KO:K14491 eggNOG:COG2204 HOGENOM:HOG000238840
GO:GO:0031537 InterPro:IPR017053 PIRSF:PIRSF036392 EMBL:BE522295
IPI:IPI00541861 IPI:IPI01019479 RefSeq:NP_180090.6 UniGene:At.19775
ProteinModelPortal:P62598 SMR:P62598 IntAct:P62598 STRING:P62598
GeneID:817056 KEGG:ath:AT2G25180 GeneFarm:3926 TAIR:At2g25180
InParanoid:P62598 OMA:QQAIMAN ArrayExpress:P62598
Genevestigator:P62598 GermOnline:AT2G25180 Uniprot:P62598
Length = 596
Score = 620 (223.3 bits), Expect = 1.5e-60, P = 1.5e-60
Identities = 133/225 (59%), Positives = 162/225 (72%)
Query: 3 FSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVGLEMDLPVIMMCAHGS 62
+ VT N+A+ AL++LR NKN +D+VISDV MPDMDGFKLLELVGLEMDLPVIM+ AH
Sbjct: 41 YHVTTTNQAQKALELLRENKNKFDLVISDVDMPDMDGFKLLELVGLEMDLPVIMLSAHSD 100
Query: 63 KEVVMKGVTHDACDYLTKPVRIEELKNIWQHVVRKRKNERKDLEQSGSVEGGAQQPKPFE 122
+ VMKGVTH ACDYL KPVRIEELKNIWQHVVR R ++ + +G G+ +
Sbjct: 101 PKYVMKGVTHGACDYLLKPVRIEELKNIWQHVVRSRFDKNRGSNNNGDKRDGSGN-EGVG 159
Query: 123 ESDDSYSVNEGTSN-SRKDE--EEEAEKR--------LKKPRLVWSVELHQQFVSAVKEL 171
SD N G N RKD+ E+E E R KK R+VW+VELH++FV+AV +L
Sbjct: 160 NSDQ----NNGKGNRKRKDQYNEDEDEDRDDNDDSCAQKKQRVVWTVELHKKFVAAVNQL 215
Query: 172 GFDKAGPKKILELMNIPGLTRENVASHLQKHRLYLSRLSGVSPQQ 216
G++KA PKKIL+LMN+ LTRENVASHLQK RLYL R+SGV+ QQ
Sbjct: 216 GYEKAMPKKILDLMNVEKLTRENVASHLQKFRLYLKRISGVANQQ 260
>TAIR|locus:2008585 [details] [associations]
symbol:ARR11 "response regulator 11" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS;IDA]
[GO:0009736 "cytokinin mediated signaling pathway"
evidence=RCA;TAS] [GO:0009735 "response to cytokinin stimulus"
evidence=IGI] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR001005 InterPro:IPR001789 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00249 PROSITE:PS50110 SMART:SM00448
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 GO:GO:0003682 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0009736 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 InterPro:IPR006447 TIGRFAMs:TIGR01557
PROSITE:PS51294 KO:K14491 eggNOG:COG0745 InterPro:IPR017053
PIRSF:PIRSF036392 EMBL:AJ005194 EMBL:AC008113 EMBL:BT008768
EMBL:AB041532 IPI:IPI00521272 PIR:C96700 PIR:T52034 PIR:T52074
RefSeq:NP_176938.1 UniGene:At.121 ProteinModelPortal:Q9FXD6
SMR:Q9FXD6 IntAct:Q9FXD6 STRING:Q9FXD6 EnsemblPlants:AT1G67710.1
GeneID:843096 KEGG:ath:AT1G67710 GeneFarm:3922 TAIR:At1g67710
HOGENOM:HOG000116485 InParanoid:Q9FXD6 OMA:WITRYDE PhylomeDB:Q9FXD6
ProtClustDB:CLSN2914476 Genevestigator:Q9FXD6 GermOnline:AT1G67710
Uniprot:Q9FXD6
Length = 521
Score = 583 (210.3 bits), Expect = 1.2e-56, P = 1.2e-56
Identities = 125/219 (57%), Positives = 152/219 (69%)
Query: 3 FSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVGLEMDLPVIMMCAHGS 62
+ VT C A AL +LR K+GYDIVISDV+MPDMDGFKLLE VGLE+DLPVIMM G
Sbjct: 35 YEVTTCGLAREALRLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLELDLPVIMMSVDGE 94
Query: 63 KEVVMKGVTHDACDYLTKPVRIEELKNIWQHVVRKRKNERKDLEQSGSVEGGAQQPKPFE 122
VMKGV H ACDYL KP+R++ELK IWQHV+RK+ E +D+E G EGGA ++
Sbjct: 95 TSRVMKGVQHGACDYLLKPIRMKELKIIWQHVLRKKLQEVRDIEGCG-YEGGADWITRYD 153
Query: 123 ES-------DDSYSVNEGTSNSRK----DEEEEAEKRLKKPRLVWSVELHQQFVSAVKEL 171
E+ D S+ + K DE + + KK R+VWS ELH +FV+AV ++
Sbjct: 154 EAHFLGGGEDVSFGKKRKDFDFEKKLLQDESDPSSSSSKKARVVWSFELHHKFVNAVNQI 213
Query: 172 GFD-KAGPKKILELMNIPGLTRENVASHLQKHRLYLSRL 209
G D KAGPKKIL+LMN+P LTRENVASHLQK+RLYLSRL
Sbjct: 214 GCDHKAGPKKILDLMNVPWLTRENVASHLQKYRLYLSRL 252
>TAIR|locus:2116587 [details] [associations]
symbol:RR10 "response regulator 10" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS;IDA]
[GO:0009736 "cytokinin mediated signaling pathway"
evidence=IGI;RCA;TAS] [GO:0009735 "response to cytokinin stimulus"
evidence=IGI] [GO:0010380 "regulation of chlorophyll biosynthetic
process" evidence=IGI] [GO:0031537 "regulation of anthocyanin
metabolic process" evidence=IGI;RCA] [GO:0048367 "shoot system
development" evidence=IGI] [GO:0080022 "primary root development"
evidence=IGI] [GO:0010029 "regulation of seed germination"
evidence=RCA] [GO:0048831 "regulation of shoot system development"
evidence=RCA] InterPro:IPR001005 InterPro:IPR001789
InterPro:IPR009057 Pfam:PF00072 Pfam:PF00249 PROSITE:PS50110
SMART:SM00448 GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 GO:GO:0003682
GO:GO:0010380 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0009736
GO:GO:0080022 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
GO:GO:0048367 InterPro:IPR017930 InterPro:IPR006447
TIGRFAMs:TIGR01557 PROSITE:PS51294 KO:K14491 EMBL:AJ005195
EMBL:AL021636 EMBL:AL161580 EMBL:BT003158 IPI:IPI00544491
PIR:T04653 RefSeq:NP_194920.1 UniGene:At.122 PDB:1IRZ PDBsum:1IRZ
ProteinModelPortal:O49397 SMR:O49397 IntAct:O49397 STRING:O49397
PRIDE:O49397 EnsemblPlants:AT4G31920.1 GeneID:829322
KEGG:ath:AT4G31920 GeneFarm:2450 TAIR:At4g31920 eggNOG:COG2204
HOGENOM:HOG000238840 InParanoid:O49397 OMA:THELHNK PhylomeDB:O49397
ProtClustDB:CLSN2685991 EvolutionaryTrace:O49397
Genevestigator:O49397 GermOnline:AT4G31920 GO:GO:0031537
InterPro:IPR017053 PIRSF:PIRSF036392 Uniprot:O49397
Length = 552
Score = 575 (207.5 bits), Expect = 8.6e-56, P = 8.6e-56
Identities = 118/216 (54%), Positives = 150/216 (69%)
Query: 3 FSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVGLEMDLPVIMMCAHGS 62
+ VT N+A+ AL++LR NKN +D+VISDV MPDMDGFKLLELVGLEMDLPVIM+ AH
Sbjct: 41 YHVTTTNQAQTALELLRENKNKFDLVISDVDMPDMDGFKLLELVGLEMDLPVIMLSAHSD 100
Query: 63 KEVVMKGVTHDACDYLTKPVRIEELKNIWQHVVRKRKNERKDLEQSGSVEGGAQQPKPFE 122
+ VMKGV H ACDYL KPVRIEELKNIWQHVVRK K ++ +S G K
Sbjct: 101 PKYVMKGVKHGACDYLLKPVRIEELKNIWQHVVRKSKLKKN---KSNVSNGSGNCDKANR 157
Query: 123 ESDDSYSVNEGTSNSRKDEEEEAEKRLKKPRLVWSVELHQQFVSAVKELGFDKAGPKKIL 182
+ + Y E +++ A+K KPR++W+ ELH +F++AV LG ++A PKKIL
Sbjct: 158 KRKEQYEEEEEEERGNDNDDPTAQK---KPRVLWTHELHNKFLAAVDHLGVERAVPKKIL 214
Query: 183 ELMNIPGLTRENVASHLQKHRLYLSRLSGVSPQQGN 218
+LMN+ LTRENVASHLQK R+ L ++S + QQ N
Sbjct: 215 DLMNVDKLTRENVASHLQKFRVALKKVSDDAIQQAN 250
>TAIR|locus:2065398 [details] [associations]
symbol:RR14 "response regulator 14" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS] [GO:0009736
"cytokinin mediated signaling pathway" evidence=RCA;TAS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0042802 "identical
protein binding" evidence=IPI] [GO:0010029 "regulation of seed
germination" evidence=RCA] [GO:0031537 "regulation of anthocyanin
metabolic process" evidence=RCA] [GO:0048831 "regulation of shoot
system development" evidence=RCA] InterPro:IPR001005
InterPro:IPR001789 InterPro:IPR009057 Pfam:PF00072 Pfam:PF00249
PROSITE:PS50110 SMART:SM00448 GO:GO:0005634 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
GO:GO:0003682 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0009736
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 InterPro:IPR017930
InterPro:IPR006447 TIGRFAMs:TIGR01557 PROSITE:PS51294 KO:K14491
eggNOG:COG0745 InterPro:IPR017053 PIRSF:PIRSF036392 EMBL:AC006069
EMBL:AY099726 EMBL:AY128887 EMBL:AY088149 IPI:IPI00545640
PIR:G84428 RefSeq:NP_178285.1 UniGene:At.42470
ProteinModelPortal:Q8L9Y3 SMR:Q8L9Y3 IntAct:Q8L9Y3 STRING:Q8L9Y3
EnsemblPlants:AT2G01760.1 GeneID:814707 KEGG:ath:AT2G01760
GeneFarm:3930 TAIR:At2g01760 HOGENOM:HOG000034077 InParanoid:Q8L9Y3
OMA:SWILERS PhylomeDB:Q8L9Y3 ProtClustDB:CLSN2913129
Genevestigator:Q8L9Y3 GermOnline:AT2G01760 Uniprot:Q8L9Y3
Length = 382
Score = 436 (158.5 bits), Expect = 4.6e-41, P = 4.6e-41
Identities = 98/188 (52%), Positives = 123/188 (65%)
Query: 48 LEMDLPVIMMCAHGSKEVVMKGVTHDACDYLTKPVRIEELKNIWQHVVRKRKNERKDLEQ 107
LEMDLPVIMM G VM G+ H ACDYL KP+R EELKNIWQHVVR++ +K+L
Sbjct: 81 LEMDLPVIMMSVDGRTTTVMTGINHGACDYLIKPIRPEELKNIWQHVVRRKCVMKKELRS 140
Query: 108 SGSVE----GGAQQP---KPFEESDDSYSV--NEGTSNSRKDEEEEAEKRL-------KK 151
S ++E G+ + E S++S N+ R + ++ E L KK
Sbjct: 141 SQALEDNKNSGSLETVVVSVSECSEESLMKCRNKKKKKKRSVDRDDNEDDLLLDPGNSKK 200
Query: 152 PRLVWSVELHQQFVSAVKELGFDKAGPKKILELMNIPGLTRENVASHLQKHRLYLSRLSG 211
R+VWS+ELHQQFV+AV +LG DKA PK+ILELMN+PGL+RENVASHLQK RLYL RLSG
Sbjct: 201 SRVVWSIELHQQFVNAVNKLGIDKAVPKRILELMNVPGLSRENVASHLQKFRLYLKRLSG 260
Query: 212 VSPQQGNS 219
+ Q +S
Sbjct: 261 EASQSNDS 268
Score = 329 (120.9 bits), Expect = 5.5e-32, Sum P(2) = 5.5e-32
Identities = 62/111 (55%), Positives = 83/111 (74%)
Query: 3 FSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVGL-EMDLPVIMMCAHG 61
+ VT C++A++AL +LR K+ +D+V+SDVHMP M+G+ LL+ VGL EMDLPVIMM G
Sbjct: 35 YQVTICSQADVALTILRERKDSFDLVLSDVHMPGMNGYNLLQQVGLLEMDLPVIMMSVDG 94
Query: 62 SKEVVMKGVTHDACDYLTKPVRIEELKNIWQHVVRKRKNERKDLEQSGSVE 112
VM G+ H ACDYL KP+R EELKNIWQHVVR++ +K+L S ++E
Sbjct: 95 RTTTVMTGINHGACDYLIKPIRPEELKNIWQHVVRRKCVMKKELRSSQALE 145
Score = 37 (18.1 bits), Expect = 5.5e-32, Sum P(2) = 5.5e-32
Identities = 10/36 (27%), Positives = 21/36 (58%)
Query: 134 TSNSRKDEEEEAEKRLKKPR-LVWSVELHQQFVSAV 168
+ + + + E+ KR + + LV S +LH Q ++A+
Sbjct: 259 SGEASQSNDSESTKRYENIQALVSSGQLHPQTLAAL 294
>TAIR|locus:2093668 [details] [associations]
symbol:RR1 "response regulator 1" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS;IDA]
[GO:0009736 "cytokinin mediated signaling pathway"
evidence=IGI;RCA;TAS] [GO:0009735 "response to cytokinin stimulus"
evidence=IGI;IMP] [GO:0005515 "protein binding" evidence=IPI]
[GO:0010380 "regulation of chlorophyll biosynthetic process"
evidence=IGI] [GO:0031537 "regulation of anthocyanin metabolic
process" evidence=IGI;RCA] [GO:0048367 "shoot system development"
evidence=IGI] [GO:0080022 "primary root development" evidence=IGI]
[GO:0006487 "protein N-linked glycosylation" evidence=RCA]
[GO:0006635 "fatty acid beta-oxidation" evidence=RCA] [GO:0010029
"regulation of seed germination" evidence=RCA] [GO:0010043
"response to zinc ion" evidence=RCA] [GO:0016558 "protein import
into peroxisome matrix" evidence=RCA] [GO:0048831 "regulation of
shoot system development" evidence=RCA] InterPro:IPR001005
InterPro:IPR001789 InterPro:IPR009057 Pfam:PF00072 Pfam:PF00249
PROSITE:PS50110 SMART:SM00448 GO:GO:0005634 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
GO:GO:0003682 GO:GO:0010380 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0009736 GO:GO:0080022 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 GO:GO:0048367 InterPro:IPR017930 InterPro:IPR006447
TIGRFAMs:TIGR01557 PROSITE:PS51294 KO:K14491 eggNOG:COG0745
GO:GO:0031537 InterPro:IPR017053 PIRSF:PIRSF036392 EMBL:AB016471
EMBL:AP001308 EMBL:AB028608 EMBL:AY056099 EMBL:AK316883
IPI:IPI00534841 IPI:IPI00547650 PIR:T51246 RefSeq:NP_566561.2
RefSeq:NP_850600.2 UniGene:At.183 UniGene:At.48672
ProteinModelPortal:Q940D0 SMR:Q940D0 IntAct:Q940D0 STRING:Q940D0
PaxDb:Q940D0 PRIDE:Q940D0 EnsemblPlants:AT3G16857.2 GeneID:820940
KEGG:ath:AT3G16857 GeneFarm:3920 TAIR:At3g16857
HOGENOM:HOG000034078 InParanoid:Q940D0 OMA:RTCLYEV PhylomeDB:Q940D0
ProtClustDB:CLSN2680844 Genevestigator:Q940D0 GermOnline:AT3G16857
Uniprot:Q940D0
Length = 690
Score = 429 (156.1 bits), Expect = 8.3e-40, P = 8.3e-40
Identities = 95/160 (59%), Positives = 112/160 (70%)
Query: 3 FSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVGLEMDLPVIMMCAHGS 62
+ VTKCNRAE+AL +LR NK+G+DIVISDVHMPDMDGFKLLE VGLEMDLPVIMM A S
Sbjct: 61 YEVTKCNRAEMALSLLRKNKHGFDIVISDVHMPDMDGFKLLEHVGLEMDLPVIMMSADDS 120
Query: 63 KEVVMKGVTHDACDYLTKPVRIEELKNIWQHVVRKRKNERKDLEQSGSVE---------- 112
K VV+KGVTH A DYL KPVR+E LKNIWQHVVRKR++E E SGS+E
Sbjct: 121 KSVVLKGVTHGAVDYLIKPVRMEALKNIWQHVVRKRRSEWSVPEHSGSIEETGERQQQQH 180
Query: 113 ---GGAQQPKPFEES--DDSYSVNEGTSNSRKDEEEEAEK 147
GG E++ D+S SVNEG +N R + ++
Sbjct: 181 RGGGGGAAVSGGEDAVDDNSSSVNEG-NNWRSSSRKRKDE 219
Score = 336 (123.3 bits), Expect = 1.3e-29, P = 1.3e-29
Identities = 84/181 (46%), Positives = 112/181 (61%)
Query: 54 VIMMCAHGSKEVVMKGVTHDACDYLTKPV-RIEELK-NIWQHVVR-KRKNERKDLEQSGS 110
V+ HG+ + ++K V +A + + V R + ++ +H + ER+ + G
Sbjct: 124 VLKGVTHGAVDYLIKPVRMEALKNIWQHVVRKRRSEWSVPEHSGSIEETGERQQQQHRGG 183
Query: 111 VEGGAQQPKPFEESDDSYSVNEGT---SNSRKDEEEEAEKR----------LKKPRLVWS 157
G A D+S SVNEG S+SRK ++EE E++ LKKPR+VWS
Sbjct: 184 GGGAAVSGGEDAVDDNSSSVNEGNNWRSSSRKRKDEEGEEQGDDKDEDASNLKKPRVVWS 243
Query: 158 VELHQQFVSAVKELGFDKAGPKKILELMNIPGLTRENVASHLQKHRLYLSRLSGVSPQQG 217
VELHQQFV+AV +LG +KA PKKILELMN+PGLTRENVASHLQK+R+YL RL GVS QG
Sbjct: 244 VELHQQFVAAVNQLGVEKAVPKKILELMNVPGLTRENVASHLQKYRIYLRRLGGVSQHQG 303
Query: 218 N 218
N
Sbjct: 304 N 304
>UNIPROTKB|Q7Y0W3 [details] [associations]
symbol:Q7Y0W3 "Two-component response regulator EHD1"
species:39946 "Oryza sativa Indica Group" [GO:0003677 "DNA binding"
evidence=IDA] [GO:0048576 "positive regulation of short-day
photoperiodism, flowering" evidence=IMP] InterPro:IPR001005
InterPro:IPR001789 InterPro:IPR009057 Pfam:PF00072 Pfam:PF00249
PROSITE:PS50110 SMART:SM00448 GO:GO:0005634 GO:GO:0006355
GO:GO:0035556 GO:GO:0003677 GO:GO:0006351 GO:GO:0003682
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0009908 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HSSP:O49397 InterPro:IPR017930
InterPro:IPR006447 TIGRFAMs:TIGR01557 PROSITE:PS51294
eggNOG:NOG265546 InterPro:IPR017053 PIRSF:PIRSF036392 EMBL:AB092508
ProteinModelPortal:Q7Y0W3 SMR:Q7Y0W3 KEGG:dosa:Os10t0463400-01
Gramene:Q7Y0W3 HOGENOM:HOG000084878 GO:GO:0048576 Uniprot:Q7Y0W3
Length = 341
Score = 354 (129.7 bits), Expect = 2.3e-32, P = 2.3e-32
Identities = 85/236 (36%), Positives = 125/236 (52%)
Query: 3 FSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVGLEMDLPVIMMCAHGS 62
+ VT A+ + N D+VISD P DG +L+ V + +P ++M + G
Sbjct: 35 YKVTTYKNVREAVPFILDNPQIVDLVISDAFFPTEDGLLILQEVTSKFGIPTVIMASSGD 94
Query: 63 KEVVMKGVTHDACDYLTKPVRIEELKNIWQHVVRKRKNERKDLEQSGSVEGGAQQPKPFE 122
VMK V + A D+L KPVRIEEL NIWQH+ RK+ + K+ G++E P
Sbjct: 95 TNTVMKYVANGAFDFLLKPVRIEELSNIWQHIFRKQMQDHKNNNMVGNLEKPGHPPSILA 154
Query: 123 ESDDSYSVNEGTS---------NSRKDEE-----EEAEKR-LKKPRLVWSVELHQQFVSA 167
+ + + T+ N +D+ E + R L K RL W+ +LH+QF++A
Sbjct: 155 MARATPATTRSTATEASLAPLENEVRDDMVNYNGEITDIRDLGKSRLTWTTQLHRQFIAA 214
Query: 168 VKELGFDKAGPKKILELMNIPGLTRENVASHLQKHRLYLSRLSGVSPQQGNSFVSS 223
V LG DKA PKKIL +M + LTRE VASHLQK+R+ L + + + G + S+
Sbjct: 215 VNHLGEDKAVPKKILGIMKVKHLTREQVASHLQKYRMQLKKSIPTTSKHGATLSST 270
>UNIPROTKB|Q7Y0W5 [details] [associations]
symbol:EHD1 "Two-component response regulator EHD1"
species:39947 "Oryza sativa Japonica Group" [GO:0048576 "positive
regulation of short-day photoperiodism, flowering" evidence=IMP]
InterPro:IPR001005 InterPro:IPR001789 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00249 PROSITE:PS50110 SMART:SM00448
GO:GO:0005634 GO:GO:0006355 GO:GO:0035556 GO:GO:0003677
GO:GO:0006351 GO:GO:0003682 Gene3D:1.10.10.60 SUPFAM:SSF46689
EMBL:DP000086 EMBL:CM000147 GO:GO:0009908 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HSSP:O49397 InterPro:IPR017930
InterPro:IPR006447 TIGRFAMs:TIGR01557 PROSITE:PS51294
InterPro:IPR017053 PIRSF:PIRSF036392 GO:GO:0048576 EMBL:AB092506
EMBL:AB092507 EMBL:AC027038 ProteinModelPortal:Q7Y0W5
Gramene:Q7Y0W5 eggNOG:KOG1601 Uniprot:Q7Y0W5
Length = 341
Score = 354 (129.7 bits), Expect = 2.3e-32, P = 2.3e-32
Identities = 85/236 (36%), Positives = 125/236 (52%)
Query: 3 FSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVGLEMDLPVIMMCAHGS 62
+ VT A+ + N D+VISD P DG +L+ V + +P ++M + G
Sbjct: 35 YKVTTYKNVREAVPFILDNPQIVDLVISDAFFPTEDGLLILQEVTSKFGIPTVIMASSGD 94
Query: 63 KEVVMKGVTHDACDYLTKPVRIEELKNIWQHVVRKRKNERKDLEQSGSVEGGAQQPKPFE 122
VMK V + A D+L KPVRIEEL NIWQH+ RK+ + K+ G++E P
Sbjct: 95 TNTVMKYVANGAFDFLLKPVRIEELSNIWQHIFRKQMQDHKNNNMVGNLEKPGHPPSILA 154
Query: 123 ESDDSYSVNEGTS---------NSRKDEE-----EEAEKR-LKKPRLVWSVELHQQFVSA 167
+ + + T+ N +D+ E + R L K RL W+ +LH+QF++A
Sbjct: 155 MARATPATTRSTATEASLAPLENEVRDDMVNYNGEITDIRDLGKSRLTWTTQLHRQFIAA 214
Query: 168 VKELGFDKAGPKKILELMNIPGLTRENVASHLQKHRLYLSRLSGVSPQQGNSFVSS 223
V LG DKA PKKIL +M + LTRE VASHLQK+R+ L + + + G + S+
Sbjct: 215 VNHLGEDKAVPKKILGIMKVKHLTREQVASHLQKYRMQLKKSIPTTSKHGATLSST 270
>TAIR|locus:2155954 [details] [associations]
symbol:APRR4 "pseudo-response regulator 4" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS]
InterPro:IPR001789 InterPro:IPR009057 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0035556 GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 InterPro:IPR006447 TIGRFAMs:TIGR01557
PROSITE:PS51294 EMBL:AB016872 IPI:IPI00535768 RefSeq:NP_199735.1
UniGene:At.55447 ProteinModelPortal:Q9FJ16 SMR:Q9FJ16
EnsemblPlants:AT5G49240.1 GeneID:834984 KEGG:ath:AT5G49240
GeneFarm:4344 TAIR:At5g49240 eggNOG:NOG265546 HOGENOM:HOG000029456
InParanoid:Q9FJ16 KO:K14491 OMA:SEIGSEM PhylomeDB:Q9FJ16
ProtClustDB:CLSN2916474 Genevestigator:Q9FJ16 GermOnline:AT5G49240
Uniprot:Q9FJ16
Length = 292
Score = 330 (121.2 bits), Expect = 7.9e-30, P = 7.9e-30
Identities = 77/208 (37%), Positives = 118/208 (56%)
Query: 3 FSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVGLEMDLPVIMMCAHGS 62
+ VT CN A+ LR ++N +D+ + V+ + D F+ L +G EMDLP+I++ S
Sbjct: 66 YQVTICNEVNKAMHTLRNHRNRFDLAMIQVNNAEGDIFRFLSEIGSEMDLPIIIISEDDS 125
Query: 63 KEVVMKGVTHDACDYLTKPVRIEELKNIWQHVVRKRKNERKDL---------EQSGSVEG 113
+ V K + + A DYL KP+R E+L+ +++H+V+K + R + E+S SV G
Sbjct: 126 VKSVKKWMINGAADYLIKPIRPEDLRIVFKHLVKKMRERRSVVTGEAEKAAGEKSSSV-G 184
Query: 114 GAQQPKPFEESDDSYSVNEGTSNSRKDEEEEA-EKRLKKPRLVWSVELHQQFVSAVKELG 172
+ P + S E R D + A KK R+VW ELHQ F++AV LG
Sbjct: 185 DSTIRNPNKSKRSSCLEAEVNEEDRHDHNDRACASSAKKRRVVWDEELHQNFLNAVDFLG 244
Query: 173 FDKAGPKKILELMNIPGLTRENVASHLQ 200
++A PKKIL++M + ++RENVASHLQ
Sbjct: 245 LERAVPKKILDVMKVDYISRENVASHLQ 272
>TAIR|locus:2141020 [details] [associations]
symbol:APRR2 species:3702 "Arabidopsis thaliana"
[GO:0000156 "phosphorelay response regulator activity"
evidence=IEA;ISS] [GO:0000160 "phosphorelay signal transduction
system" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;IDA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0007623 "circadian rhythm" evidence=RCA;TAS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0009736 "cytokinin mediated signaling pathway" evidence=RCA]
InterPro:IPR001005 InterPro:IPR001789 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00249 PROSITE:PS50110 SMART:SM00448
GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0035556
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 GO:GO:0003682
EMBL:AL161547 Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:AL021889
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 InterPro:IPR017930
InterPro:IPR006447 TIGRFAMs:TIGR01557 PROSITE:PS51294 EMBL:AB041531
EMBL:AF385725 EMBL:AY143963 IPI:IPI00524902 IPI:IPI00542892
PIR:T05088 RefSeq:NP_001078405.1 RefSeq:NP_001154250.1
RefSeq:NP_001190759.1 RefSeq:NP_567548.1 RefSeq:NP_849403.1
RefSeq:NP_849404.2 UniGene:At.25394 ProteinModelPortal:Q6LA43
SMR:Q6LA43 IntAct:Q6LA43 STRING:Q6LA43 EnsemblPlants:AT4G18020.1
EnsemblPlants:AT4G18020.2 EnsemblPlants:AT4G18020.3
EnsemblPlants:AT4G18020.6 GeneID:827527 KEGG:ath:AT4G18020
GeneFarm:4314 TAIR:At4g18020 eggNOG:NOG268152 HOGENOM:HOG000005909
InParanoid:Q6LA43 OMA:TIMISTD PhylomeDB:Q6LA43
ProtClustDB:CLSN2689492 Genevestigator:Q6LA43 GermOnline:AT4G18020
Uniprot:Q6LA43
Length = 535
Score = 165 (63.1 bits), Expect = 2.3e-22, Sum P(2) = 2.3e-22
Identities = 41/107 (38%), Positives = 60/107 (56%)
Query: 99 KNERKDLEQSGSVEGGAQQPKPFEESDDSYSVNEGTSNSRKDE--EEEAEKRLKKPRLVW 156
K ER D E+ E G + +S D + + T K + + + + ++ W
Sbjct: 243 KEERGDSEKEEEGETGDLISEK-TDSVDIHKKEDETKPINKSSGIKNVSGNKTSRKKVDW 301
Query: 157 SVELHQQFVSAVKELGFDKAGPKKILELMNIPGLTRENVASHLQKHR 203
+ ELH++FV AV++LG D+A P +ILELM + LTR NVASHLQK R
Sbjct: 302 TPELHKKFVQAVEQLGVDQAIPSRILELMKVGTLTRHNVASHLQKFR 348
Score = 133 (51.9 bits), Expect = 2.3e-22, Sum P(2) = 2.3e-22
Identities = 36/102 (35%), Positives = 51/102 (50%)
Query: 1 MGFSVTKCNRAEIALDMLRTNKNGYDIVISDVHMP-DMDGFKLLELVGLEMDLPVIMMCA 59
M + VT AL + N + I I +V+M + + FK LE + LP IM+
Sbjct: 46 MDYIVTTFTDETEALSAVVKNPESFHIAIVEVNMSAESESFKFLEAA--KDVLPTIMIST 103
Query: 60 HGSKEVVMKGVTHDACDYLTKPVRIEELKNIWQHVVRKRKNE 101
MK + A ++L KP+ E+LKNIWQHVV K N+
Sbjct: 104 DHCITTTMKCIALGAVEFLQKPLSPEKLKNIWQHVVHKAFND 145
Score = 48 (22.0 bits), Expect = 1.8e-07, Sum P(2) = 1.8e-07
Identities = 17/77 (22%), Positives = 36/77 (46%)
Query: 87 LKNIWQHVVRKRKNERKDLEQSGSVEGGAQQPKPFEESDDSYSVNEGTSNSRKDEEEEAE 146
++N+ + + +D+ +S SV+ ++ DD V E +S K+EE E
Sbjct: 204 MENVNSSTEKDNMEDHQDIGESKSVDTTNRKL-----DDDKVVVKEERGDSEKEEEGETG 258
Query: 147 KRLKKPRLVWSVELHQQ 163
+ + SV++H++
Sbjct: 259 DLISEK--TDSVDIHKK 273
>TAIR|locus:2148348 [details] [associations]
symbol:BOA "AT5G59570" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS;IDA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=TAS] [GO:0007623 "circadian rhythm" evidence=IMP]
[GO:0009909 "regulation of flower development" evidence=IMP]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 GO:GO:0005634
EMBL:CP002688 GO:GO:0003677 GO:GO:0007623 GO:GO:0003700
GO:GO:0003682 Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:AB025604
GO:GO:0009909 HSSP:O49397 InterPro:IPR017930 InterPro:IPR006447
TIGRFAMs:TIGR01557 PROSITE:PS51294 EMBL:BT026065 EMBL:AK117348
EMBL:AB206577 IPI:IPI00538187 RefSeq:NP_200765.1 UniGene:At.29219
ProteinModelPortal:Q9LTH4 SMR:Q9LTH4 STRING:Q9LTH4
EnsemblPlants:AT5G59570.1 GeneID:836076 KEGG:ath:AT5G59570
TAIR:At5g59570 InParanoid:Q9LTH4 OMA:ERSRTIH PhylomeDB:Q9LTH4
ProtClustDB:CLSN2685121 Genevestigator:Q9LTH4 Uniprot:Q9LTH4
Length = 298
Score = 241 (89.9 bits), Expect = 2.1e-20, P = 2.1e-20
Identities = 53/118 (44%), Positives = 78/118 (66%)
Query: 110 SVEGGAQQPKPFEESD--DSYSVNEGTSNSRKDEEEEAE-KRLKKPRLVWSVELHQQFVS 166
SV G PK ++SD ++ +V + T+ E+A K K+PRLVW+ +LH++FV
Sbjct: 99 SVPGS--DPKKQKKSDGGEAAAVEDSTAEEGDSGPEDASGKTSKRPRLVWTPQLHKRFVD 156
Query: 167 AVKELGFDKAGPKKILELMNIPGLTRENVASHLQKHRLYLSRLSGVSPQQGNSFVSSN 224
V LG A PK I++LMN+ GLTRENVASHLQK+RLYL R+ G++ ++ + + SS+
Sbjct: 157 VVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLKRIQGLTTEE-DPYSSSD 213
>TAIR|locus:2103247 [details] [associations]
symbol:AT3G10760 "AT3G10760" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0003677 GO:GO:0003700 GO:GO:0003682
EMBL:AC011708 Gene3D:1.10.10.60 SUPFAM:SSF46689 HSSP:O49397
InterPro:IPR017930 InterPro:IPR006447 TIGRFAMs:TIGR01557
PROSITE:PS51294 HOGENOM:HOG000238691 ProtClustDB:CLSN2716677
IPI:IPI00530545 RefSeq:NP_187687.1 UniGene:At.39869
ProteinModelPortal:Q9SG82 SMR:Q9SG82 PRIDE:Q9SG82
EnsemblPlants:AT3G10760.1 GeneID:820245 KEGG:ath:AT3G10760
TAIR:At3g10760 eggNOG:NOG312708 InParanoid:Q9SG82 OMA:FARWEEE
PhylomeDB:Q9SG82 Genevestigator:Q9SG82 Uniprot:Q9SG82
Length = 335
Score = 231 (86.4 bits), Expect = 2.5e-19, P = 2.5e-19
Identities = 47/102 (46%), Positives = 64/102 (62%)
Query: 116 QQPKPFEESDDSYSVNEGTSNSRKDEEEEAEKRLKKPRLVWSVELHQQFVSAVKELGFDK 175
Q P S ++ + S +E + LK+PRLVW+ +LH++FV AV LG
Sbjct: 70 QLPSSQANSSAEFAADSADLGSGGAAGDEPARTLKRPRLVWTPQLHKRFVDAVAHLGIKN 129
Query: 176 AGPKKILELMNIPGLTRENVASHLQKHRLYLSRLSGVSPQQG 217
A PK I++LM++ GLTRENVASHLQK+RLYL R+ G+S G
Sbjct: 130 AVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQGLSSGGG 171
>TAIR|locus:2175364 [details] [associations]
symbol:AT5G05090 "AT5G05090" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 EMBL:CP002688
GO:GO:0003677 GO:GO:0003700 GO:GO:0003682 Gene3D:1.10.10.60
SUPFAM:SSF46689 EMBL:AB005245 HSSP:O49397 InterPro:IPR017930
InterPro:IPR006447 TIGRFAMs:TIGR01557 PROSITE:PS51294 EMBL:AY093188
EMBL:BT006289 IPI:IPI00523871 RefSeq:NP_196128.1 UniGene:At.33034
ProteinModelPortal:Q9FF65 SMR:Q9FF65 PRIDE:Q9FF65
EnsemblPlants:AT5G05090.1 GeneID:830391 KEGG:ath:AT5G05090
TAIR:At5g05090 InParanoid:Q9FF65 OMA:MREEDSN PhylomeDB:Q9FF65
ProtClustDB:CLSN2716677 ArrayExpress:Q9FF65 Genevestigator:Q9FF65
Uniprot:Q9FF65
Length = 266
Score = 224 (83.9 bits), Expect = 1.4e-18, P = 1.4e-18
Identities = 56/128 (43%), Positives = 75/128 (58%)
Query: 85 EELKNIWQHVVRKRKNERKDLEQSGSVEGGAQQPKPFEESDDSYSVNEGTSNSRKDEEEE 144
EEL + Q ++ DL ++ + G QP P S E +S DE
Sbjct: 20 EELIPLSQSLITPDLAIAFDLHRNNNSNSG--QPLPQTTPPQPNSSAEIAGDSTGDEPA- 76
Query: 145 AEKRLKKPRLVWSVELHQQFVSAVKELGFDKAGPKKILELMNIPGLTRENVASHLQKHRL 204
+ LK+PRLVW+ +LH++FV AV LG A PK I++LM++ GLTRENVASHLQK+RL
Sbjct: 77 --RTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRL 134
Query: 205 YLSRL-SG 211
YL R+ SG
Sbjct: 135 YLKRMKSG 142
>TAIR|locus:2058445 [details] [associations]
symbol:MYBC1 "AT2G40970" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0009409 "response to cold" evidence=IMP] InterPro:IPR001005
InterPro:IPR009057 Pfam:PF00249 GO:GO:0005634 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0003677 GO:GO:0009409 GO:GO:0003700
GO:GO:0003682 Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:AC004261
HSSP:O49397 InterPro:IPR017930 InterPro:IPR006447
TIGRFAMs:TIGR01557 PROSITE:PS51294 EMBL:AC002409 EMBL:AY072381
EMBL:BT000098 IPI:IPI00539516 PIR:T00761 RefSeq:NP_181630.1
UniGene:At.27776 ProteinModelPortal:O22210 SMR:O22210
EnsemblPlants:AT2G40970.1 GeneID:818697 KEGG:ath:AT2G40970
TAIR:At2g40970 eggNOG:NOG255246 HOGENOM:HOG000238691
InParanoid:O22210 OMA:RYEDSEY PhylomeDB:O22210
ProtClustDB:CLSN2913178 ArrayExpress:O22210 Genevestigator:O22210
Uniprot:O22210
Length = 248
Score = 221 (82.9 bits), Expect = 2.8e-18, P = 2.8e-18
Identities = 52/135 (38%), Positives = 74/135 (54%)
Query: 93 HVVRKRKNE--RKDLEQSGSVEGGAQQPKPFEESDDSYSVNEGTSNSRKDEEEEAEKRLK 150
H+ KR + L+ S + P P + D + + T E + LK
Sbjct: 46 HLGSKRTTAIYHQKLQSSTTPTTPTPTPPPMMMNSD-FGGGDSTDLGSGSIGGEPARTLK 104
Query: 151 KPRLVWSVELHQQFVSAVKELGFDKAGPKKILELMNIPGLTRENVASHLQKHRLYLSRLS 210
+PRLVW+ +LH++FV AV LG A PK I++LM++ GLTRENVASHLQK+RLYL R+
Sbjct: 105 RPRLVWTPQLHKRFVDAVGHLGIKNAVPKTIMQLMSVEGLTRENVASHLQKYRLYLRRMQ 164
Query: 211 GVSPQQGNSFVSSNI 225
G + GN ++
Sbjct: 165 GGN---GNGITGGHV 176
>TAIR|locus:2167639 [details] [associations]
symbol:GLK2 "AT5G44190" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM;ISS] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS] [GO:0045893
"positive regulation of transcription, DNA-dependent"
evidence=RCA;IMP;IDA] [GO:0009658 "chloroplast organization"
evidence=IMP] [GO:0009910 "negative regulation of flower
development" evidence=IGI] [GO:0010380 "regulation of chlorophyll
biosynthetic process" evidence=IGI] [GO:0006364 "rRNA processing"
evidence=RCA] [GO:0006417 "regulation of translation" evidence=RCA]
[GO:0009651 "response to salt stress" evidence=RCA] [GO:0009657
"plastid organization" evidence=RCA] [GO:0009737 "response to
abscisic acid stimulus" evidence=RCA] [GO:0009902 "chloroplast
relocation" evidence=RCA] [GO:0009965 "leaf morphogenesis"
evidence=RCA] [GO:0010027 "thylakoid membrane organization"
evidence=RCA] [GO:0010207 "photosystem II assembly" evidence=RCA]
[GO:0030154 "cell differentiation" evidence=RCA] [GO:0035304
"regulation of protein dephosphorylation" evidence=RCA] [GO:0042793
"transcription from plastid promoter" evidence=RCA]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 GO:GO:0005634
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0045893 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 GO:GO:0003682 EMBL:AB005239
GO:GO:0009658 GO:GO:0010380 Gene3D:1.10.10.60 SUPFAM:SSF46689
PROSITE:PS51293 GO:GO:0009910 HSSP:O49397 InterPro:IPR017930
InterPro:IPR006447 TIGRFAMs:TIGR01557 PROSITE:PS51294
HOGENOM:HOG000237698 EMBL:AB062490 EMBL:AY026773 EMBL:AY028368
EMBL:AY050386 EMBL:AY124819 IPI:IPI00535889 RefSeq:NP_199232.1
UniGene:At.19638 ProteinModelPortal:Q9FFH0 SMR:Q9FFH0 STRING:Q9FFH0
EnsemblPlants:AT5G44190.1 GeneID:834442 KEGG:ath:AT5G44190
TAIR:At5g44190 eggNOG:NOG271712 InParanoid:Q9FFH0 OMA:QEMEGNT
PhylomeDB:Q9FFH0 ProtClustDB:CLSN2916711 Genevestigator:Q9FFH0
Uniprot:Q9FFH0
Length = 386
Score = 192 (72.6 bits), Expect = 1.2e-14, P = 1.2e-14
Identities = 42/100 (42%), Positives = 62/100 (62%)
Query: 112 EGGAQQPKPFEESDDSYSVNEGTSNSRKDEEEEAEKR--LKKPRLVWSVELHQQFVSAVK 169
EGG F + +V G +K ++ +++ KKP++ W+ ELH++FV AV+
Sbjct: 110 EGGGGGDGGFRDK----TVRRGKRKGKKSKDCLSDENDIKKKPKVDWTPELHRKFVQAVE 165
Query: 170 ELGFDKAGPKKILELMNIPGLTRENVASHLQKHRLYLSRL 209
+LG DKA P +ILE+MN+ LTR NVASHLQK+R + L
Sbjct: 166 QLGVDKAVPSRILEIMNVKSLTRHNVASHLQKYRSHRKHL 205
>UNIPROTKB|Q5Z5I4 [details] [associations]
symbol:GLK1 "Probable transcription factor GLK1"
species:39947 "Oryza sativa Japonica Group" [GO:0010638 "positive
regulation of organelle organization" evidence=IGI] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=IGI]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 GO:GO:0005634
GO:GO:0045893 GO:GO:0003677 EMBL:AP008212 GO:GO:0006351
GO:GO:0003682 Gene3D:1.10.10.60 SUPFAM:SSF46689 PROSITE:PS51293
InterPro:IPR017930 InterPro:IPR006447 TIGRFAMs:TIGR01557
PROSITE:PS51294 EMBL:AP005688 EMBL:AK061946 EMBL:AK065184
EMBL:AK098909 EMBL:AK122161 RefSeq:NP_001057583.2 UniGene:Os.3340
ProteinModelPortal:Q5Z5I4 STRING:Q5Z5I4
EnsemblPlants:LOC_Os06g24070.1 GeneID:4340977 KEGG:osa:4340977
Gramene:Q5Z5I4 eggNOG:NOG283574 HOGENOM:HOG000237698 OMA:IDSLTRH
ProtClustDB:CLSN2696175 GO:GO:0010638 Uniprot:Q5Z5I4
Length = 455
Score = 191 (72.3 bits), Expect = 2.5e-14, P = 2.5e-14
Identities = 41/104 (39%), Positives = 63/104 (60%)
Query: 100 NERKDLEQSGSVEGGAQQPKPFEESDDSYSVNEGTSNSRKDEEEEAEKRLKKPRLVWSVE 159
N+ D ++ +V+ GA + S S + + + SR ++ KK ++ W+ E
Sbjct: 130 NQDDDAGEA-NVDDGAAAVEAKSSSPSSTTSSSQEAESRHKSSSKSSHGKKKAKVDWTPE 188
Query: 160 LHQQFVSAVKELGFDKAGPKKILELMNIPGLTRENVASHLQKHR 203
LH++FV AV++LG DKA P +ILE+M I LTR N+ASHLQK+R
Sbjct: 189 LHRRFVQAVEQLGIDKAVPSRILEIMGIDSLTRHNIASHLQKYR 232
>TAIR|locus:2044376 [details] [associations]
symbol:PRR9 "pseudo-response regulator 9" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0007623 "circadian rhythm"
evidence=IMP;TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0009266 "response to temperature stimulus" evidence=IGI]
[GO:0010017 "red or far-red light signaling pathway" evidence=IMP]
[GO:0003677 "DNA binding" evidence=IPI] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=IDA]
InterPro:IPR001789 InterPro:IPR010402 Pfam:PF00072 Pfam:PF06203
PROSITE:PS50110 PROSITE:PS51017 SMART:SM00448 GO:GO:0005634
GO:GO:0045892 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0035556
GO:GO:0003677 GO:GO:0007623 GO:GO:0006351 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034018
GO:GO:0010017 GO:GO:0009266 EMBL:AB046953 EMBL:AF272040
EMBL:AC005310 EMBL:AY099676 EMBL:AY128856 IPI:IPI00545462
PIR:T02680 RefSeq:NP_566085.1 UniGene:At.1675 UniGene:At.65052
ProteinModelPortal:Q8L500 SMR:Q8L500 STRING:Q8L500 PRIDE:Q8L500
EnsemblPlants:AT2G46790.1 GeneID:819292 KEGG:ath:AT2G46790
GeneFarm:4360 TAIR:At2g46790 eggNOG:COG0745 InParanoid:Q8L500
KO:K12128 OMA:HEACKNI PhylomeDB:Q8L500 ProtClustDB:CLSN2688972
Genevestigator:Q8L500 GermOnline:AT2G46790 Uniprot:Q8L500
Length = 468
Score = 171 (65.3 bits), Expect = 4.0e-12, P = 4.0e-12
Identities = 41/127 (32%), Positives = 73/127 (57%)
Query: 14 ALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVGLEMD----LPVIMMCAHGSKEVVMKG 69
A ++L+ + D++++++ +P + GF LL LV +E + +PVIMM + S ++V+K
Sbjct: 72 AWEVLKEKSHNIDLILTELDLPSISGFALLALV-MEHEACKNIPVIMMSSQDSIKMVLKC 130
Query: 70 VTHDACDYLTKPVRIEELKNIWQHVVRKRKNERKDLEQSGSVEGGAQQPKPFEES-DDS- 127
+ A DYL KP+R ELKN+WQHV R+ + S+ + +E+ +DS
Sbjct: 131 MLRGAADYLIKPMRKNELKNLWQHVWRRLTLRDDPTAHAQSLPASQHNLEDTDETCEDSR 190
Query: 128 YSVNEGT 134
Y ++G+
Sbjct: 191 YHSDQGS 197
>TAIR|locus:2095933 [details] [associations]
symbol:MYR2 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 EMBL:CP002686
GO:GO:0003677 GO:GO:0003700 GO:GO:0003682 Gene3D:1.10.10.60
SUPFAM:SSF46689 HSSP:O49397 HOGENOM:HOG000239390 InterPro:IPR025756
InterPro:IPR017930 InterPro:IPR006447 Pfam:PF14379
TIGRFAMs:TIGR01557 PROSITE:PS51294 EMBL:AC011698
ProtClustDB:CLSN2686543 IPI:IPI00524229 RefSeq:NP_001118567.1
UniGene:At.40915 ProteinModelPortal:Q9SQQ9 SMR:Q9SQQ9
EnsemblPlants:AT3G04030.3 GeneID:819558 KEGG:ath:AT3G04030
TAIR:At3g04030 InParanoid:Q9SQQ9 OMA:HITSERH PhylomeDB:Q9SQQ9
Genevestigator:Q9SQQ9 Uniprot:Q9SQQ9
Length = 394
Score = 168 (64.2 bits), Expect = 5.8e-12, P = 5.8e-12
Identities = 37/71 (52%), Positives = 50/71 (70%)
Query: 151 KPRLVWSVELHQQFVSAVKELG-FDKAGPKKILELMNIPGLTRENVASHLQKHRLYLSRL 209
KPRL W+ +LH++F+ AV +LG DKA PK I+++M IPGLT ++ SHLQK+RL L
Sbjct: 45 KPRLKWTPDLHERFIEAVNQLGGADKATPKTIMKVMGIPGLTLYHLKSHLQKYRLS-KNL 103
Query: 210 SGVSPQQGNSF 220
+G Q NSF
Sbjct: 104 NG---QANNSF 111
>TAIR|locus:2085984 [details] [associations]
symbol:AT3G25790 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0003677 "DNA binding"
evidence=ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 EMBL:CP002686
EMBL:AB028607 GO:GO:0003677 GO:GO:0003700 GO:GO:0003682
Gene3D:1.10.10.60 SUPFAM:SSF46689 HSSP:O49397 InterPro:IPR017930
InterPro:IPR006447 TIGRFAMs:TIGR01557 PROSITE:PS51294
HOGENOM:HOG000237574 ProtClustDB:CLSN2687791 IPI:IPI00546166
RefSeq:NP_566778.1 UniGene:At.37325 ProteinModelPortal:Q9LS00
SMR:Q9LS00 EnsemblPlants:AT3G25790.1 GeneID:822170
KEGG:ath:AT3G25790 TAIR:At3g25790 InParanoid:Q9LS00 OMA:AYKREIS
PhylomeDB:Q9LS00 Genevestigator:Q9LS00 Uniprot:Q9LS00
Length = 357
Score = 166 (63.5 bits), Expect = 7.4e-12, P = 7.4e-12
Identities = 49/155 (31%), Positives = 80/155 (51%)
Query: 71 THDA-CDYLTKPVRIEELKNI--WQHVVRKRKNERKDLEQSGSVEGGAQQPKPFEES-DD 126
+H+ D+ K ++ E LK++ W N R+D Q E + K +E+
Sbjct: 112 SHETDIDFDDKNMKSEWLKSVQLWNQSDAVVSNNRQDRSQE-KTETLVELIKINDEAAKK 170
Query: 127 SYSVNEGTSNSRKDEEEEAEKR-LKKPRLVWSVELHQQFVSAVKELGFDK-AGPKKILEL 184
+ ++ + S +R +K R WS ELH++F++A+K+LG A PK+I ++
Sbjct: 171 NNNIKSPVTTSDGGSGGGGGRRGQRKNRRCWSQELHRRFLNALKQLGGPHVATPKQIRDI 230
Query: 185 MNIPGLTRENVASHLQKHRLYLSRLSGVSPQQGNS 219
M + GLT + V SHLQK+RL+ R S +P NS
Sbjct: 231 MKVDGLTNDEVKSHLQKYRLHARRPSQTTPNNRNS 265
>TAIR|locus:2063746 [details] [associations]
symbol:AT2G03500 "AT2G03500" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0003677 GO:GO:0003700 GO:GO:0003682
Gene3D:1.10.10.60 SUPFAM:SSF46689 HSSP:O49397 InterPro:IPR017930
InterPro:IPR006447 TIGRFAMs:TIGR01557 PROSITE:PS51294 EMBL:AC006284
HOGENOM:HOG000237574 EMBL:AY060559 EMBL:AY133630 EMBL:AK221662
IPI:IPI00544167 PIR:B84449 RefSeq:NP_027544.1 UniGene:At.27373
ProteinModelPortal:Q9ZQ85 SMR:Q9ZQ85 IntAct:Q9ZQ85
EnsemblPlants:AT2G03500.1 GeneID:814878 KEGG:ath:AT2G03500
TAIR:At2g03500 eggNOG:NOG301728 InParanoid:Q9ZQ85 OMA:QSYSMLL
PhylomeDB:Q9ZQ85 ProtClustDB:CLSN2687945 ArrayExpress:Q9ZQ85
Genevestigator:Q9ZQ85 Uniprot:Q9ZQ85
Length = 432
Score = 166 (63.5 bits), Expect = 1.2e-11, P = 1.2e-11
Identities = 37/93 (39%), Positives = 57/93 (61%)
Query: 124 SDDSYSVNEGTSNSRKDEEEEAEKRLKKPRLVWSVELHQQFVSAVKELGFDK-AGPKKIL 182
+D++Y+ N +++ + +K R WS +LH++FV A++ LG + A PK+I
Sbjct: 206 NDNNYNNNNNNNSNSNGVSSTTSQSNRKARRCWSPDLHRRFVQALQMLGGSQVATPKQIR 265
Query: 183 ELMNIPGLTRENVASHLQKHRLYLSRLSGVSPQ 215
ELM + GLT + V SHLQK+RL+ R S SPQ
Sbjct: 266 ELMKVDGLTNDEVKSHLQKYRLHTRRPSP-SPQ 297
>TAIR|locus:2151206 [details] [associations]
symbol:PRR7 "pseudo-response regulator 7" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0007623 "circadian rhythm"
evidence=IMP;TAS] [GO:0010017 "red or far-red light signaling
pathway" evidence=IMP] [GO:0005739 "mitochondrion" evidence=IDA]
[GO:0009266 "response to temperature stimulus" evidence=IGI]
[GO:0003677 "DNA binding" evidence=IPI] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0009639 "response to red or far red light" evidence=RCA]
[GO:0042752 "regulation of circadian rhythm" evidence=RCA]
[GO:0048574 "long-day photoperiodism, flowering" evidence=RCA]
InterPro:IPR001789 InterPro:IPR010402 Pfam:PF00072 Pfam:PF06203
PROSITE:PS50110 PROSITE:PS51017 SMART:SM00448 GO:GO:0005739
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0045892
GO:GO:0035556 GO:GO:0003677 GO:GO:0007623 GO:GO:0006351
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 EMBL:AB046954
EMBL:AL162973 EMBL:AY039943 EMBL:AY142560 IPI:IPI00520937
PIR:T48302 RefSeq:NP_568107.1 UniGene:At.20552
ProteinModelPortal:Q93WK5 SMR:Q93WK5 STRING:Q93WK5 PRIDE:Q93WK5
EnsemblPlants:AT5G02810.1 GeneID:831793 KEGG:ath:AT5G02810
GeneFarm:4348 TAIR:At5g02810 eggNOG:COG3437 HOGENOM:HOG000034018
InParanoid:Q93WK5 KO:K12129 OMA:HDERNIL PhylomeDB:Q93WK5
ProtClustDB:CLSN2917538 Genevestigator:Q93WK5 GermOnline:AT5G02810
GO:GO:0010017 GO:GO:0009266 Uniprot:Q93WK5
Length = 727
Score = 169 (64.5 bits), Expect = 1.4e-11, P = 1.4e-11
Identities = 46/140 (32%), Positives = 78/140 (55%)
Query: 3 FSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLL-ELVGLEM--DLPVIMMCA 59
+ V + + A +L N DIV+++V MP + G LL +++ + ++PVIMM +
Sbjct: 102 YEVVEASNGIQAWKVLEDLNNHIDIVLTEVIMPYLSGIGLLCKILNHKSRRNIPVIMMSS 161
Query: 60 HGSKEVVMKGVTHDACDYLTKPVRIEELKNIWQHVVRKRKNERKDLEQSGSVEGGAQ-QP 118
H S +V K ++ A D+L KP+R ELK +WQHV R+ ++ +SG+ + +
Sbjct: 162 HDSMGLVFKCLSKGAVDFLVKPIRKNELKILWQHVWRRCQSSSGSGSESGTHQTQKSVKS 221
Query: 119 KPFEESD-DSYSVNEGTSNS 137
K ++SD DS S +E + S
Sbjct: 222 KSIKKSDQDSGSSDENENGS 241
>TAIR|locus:2205339 [details] [associations]
symbol:HRS1 "HYPERSENSITIVITY TO LOW PI-ELICITED PRIMARY
ROOT SHORTENING 1" species:3702 "Arabidopsis thaliana" [GO:0005634
"nucleus" evidence=ISM] [GO:0003677 "DNA binding" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=TAS] [GO:0016036 "cellular response to
phosphate starvation" evidence=IMP] [GO:0080022 "primary root
development" evidence=IMP] [GO:0000041 "transition metal ion
transport" evidence=RCA] InterPro:IPR001005 InterPro:IPR009057
Pfam:PF00249 EMBL:CP002684 GenomeReviews:CT485782_GR EMBL:AC011810
GO:GO:0003677 GO:GO:0003700 GO:GO:0003682 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0080022 GO:GO:0016036 HSSP:O49397
InterPro:IPR017930 InterPro:IPR006447 TIGRFAMs:TIGR01557
PROSITE:PS51294 HOGENOM:HOG000237574 EMBL:AF367336 EMBL:AY124865
IPI:IPI00529437 PIR:F86267 RefSeq:NP_563926.1 UniGene:At.20366
ProteinModelPortal:Q9FX67 SMR:Q9FX67 STRING:Q9FX67
EnsemblPlants:AT1G13300.1 GeneID:837890 KEGG:ath:AT1G13300
TAIR:At1g13300 eggNOG:NOG274505 InParanoid:Q9FX67 OMA:TRDESMR
PhylomeDB:Q9FX67 ProtClustDB:CLSN2687791 Genevestigator:Q9FX67
Uniprot:Q9FX67
Length = 344
Score = 164 (62.8 bits), Expect = 3.4e-11, P = 3.4e-11
Identities = 38/91 (41%), Positives = 53/91 (58%)
Query: 130 VNEGTSNSRKDEEEEAEKRLKKPRLVWSVELHQQFVSAVKELGFDK-AGPKKILELMNIP 188
VN G R+ E++ R K R WS +LH++F++A++ LG A PK+I E M +
Sbjct: 162 VNGGEGRKREAEKDGGGGR--KQRRCWSSQLHRRFLNALQHLGGPHVATPKQIREFMKVD 219
Query: 189 GLTRENVASHLQKHRLYLSRLSGVSPQQGNS 219
GLT + V SHLQK+RL+ R P GNS
Sbjct: 220 GLTNDEVKSHLQKYRLHTRRPRQTVPNNGNS 250
>TAIR|locus:2163198 [details] [associations]
symbol:TOC1 "TIMING OF CAB EXPRESSION 1" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA;TAS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;ISS;TAS] [GO:0007623 "circadian rhythm"
evidence=IEP;RCA;TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0010031 "circumnutation" evidence=IMP] [GO:0006351
"transcription, DNA-dependent" evidence=TAS] [GO:0044212
"transcription regulatory region DNA binding" evidence=IDA]
[GO:0003677 "DNA binding" evidence=IDA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IDA] [GO:0010629 "negative regulation of gene expression"
evidence=IDA] [GO:0009639 "response to red or far red light"
evidence=RCA] [GO:0042752 "regulation of circadian rhythm"
evidence=RCA] [GO:0048574 "long-day photoperiodism, flowering"
evidence=RCA] InterPro:IPR001789 InterPro:IPR010402 Pfam:PF00072
Pfam:PF06203 PROSITE:PS50110 PROSITE:PS51017 SMART:SM00448
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0035556
GO:GO:0003677 GO:GO:0007623 GO:GO:0003700 GO:GO:0006351
GO:GO:0010629 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
EMBL:AB041530 EMBL:AF272039 EMBL:AJ251086 EMBL:AB010073
EMBL:AY094393 EMBL:BT005816 IPI:IPI00517214 PIR:T52075 PIR:T52076
RefSeq:NP_200946.1 UniGene:At.21919 ProteinModelPortal:Q9LKL2
SMR:Q9LKL2 IntAct:Q9LKL2 STRING:Q9LKL2 EnsemblPlants:AT5G61380.1
GeneID:836259 KEGG:ath:AT5G61380 GeneFarm:4313 TAIR:At5g61380
eggNOG:NOG242953 HOGENOM:HOG000034017 InParanoid:Q9LKL2 KO:K12127
OMA:IPIIMMS PhylomeDB:Q9LKL2 ProtClustDB:CLSN2686914
Genevestigator:Q9LKL2 GermOnline:AT5G61380 GO:GO:0010031
Uniprot:Q9LKL2
Length = 618
Score = 163 (62.4 bits), Expect = 2.3e-10, P = 2.3e-10
Identities = 47/163 (28%), Positives = 73/163 (44%)
Query: 3 FSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVGLEMDL---PVIMMCA 59
+ VT A +D L DI+++++ +P G K+L + + DL PVIMM
Sbjct: 43 YQVTAVKSARQVIDALNAEGPDIDIILAEIDLPMAKGMKMLRYITRDKDLRRIPVIMMSR 102
Query: 60 HGSKEVVMKGVTHDACDYLTKPVRIEELKNIWQHVVRKRKN----ERKDLEQSGSVEGGA 115
VV+K + A DYL KP+R EL N+W H+ R+R+ E+ L + G +
Sbjct: 103 QDEVPVVVKCLKLGAADYLVKPLRTNELLNLWTHMWRRRRMLGLAEKNMLSYDFDLVG-S 161
Query: 116 QQPKPFEESDDSYSVNEGTSNSRKDEEEEAEKRLKKPRLVWSV 158
Q P S + +S + + R + L WSV
Sbjct: 162 DQSDPNTNSTNLFSDDTDDRSLRSTNPQRGN--LSHQENEWSV 202
>TAIR|locus:2172394 [details] [associations]
symbol:MYR1 "myb-related protein 1" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] InterPro:IPR001005 InterPro:IPR009057
Pfam:PF00249 EMBL:CP002688 GO:GO:0003677 GO:GO:0003700
GO:GO:0003682 Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:AB012246
HSSP:O49397 InterPro:IPR025756 InterPro:IPR017930
InterPro:IPR006447 Pfam:PF14379 TIGRFAMs:TIGR01557 PROSITE:PS51294
IPI:IPI00538966 RefSeq:NP_197325.1 RefSeq:NP_974798.1
UniGene:At.7556 ProteinModelPortal:Q9FK47 SMR:Q9FK47
EnsemblPlants:AT5G18240.1 EnsemblPlants:AT5G18240.4 GeneID:831942
KEGG:ath:AT5G18240 TAIR:At5g18240 InParanoid:Q9FK47 OMA:LETHTRT
PhylomeDB:Q9FK47 ProtClustDB:CLSN2686543 Genevestigator:Q9FK47
Uniprot:Q9FK47
Length = 402
Score = 161 (61.7 bits), Expect = 2.5e-10, P = 2.5e-10
Identities = 32/55 (58%), Positives = 43/55 (78%)
Query: 151 KPRLVWSVELHQQFVSAVKELGF-DKAGPKKILELMNIPGLTRENVASHLQKHRL 204
KPRL W+ +LH++FV AV +LG DKA PK I+++M IPGLT ++ SHLQK+RL
Sbjct: 45 KPRLKWTPDLHERFVEAVNQLGGGDKATPKTIMKVMGIPGLTLYHLKSHLQKYRL 99
>TAIR|locus:2031210 [details] [associations]
symbol:AT1G25550 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0003677 "DNA binding"
evidence=ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0010167 "response to nitrate" evidence=RCA] [GO:0015706
"nitrate transport" evidence=RCA] InterPro:IPR001005
InterPro:IPR009057 Pfam:PF00249 EMBL:CP002684 GO:GO:0003677
GO:GO:0003700 GO:GO:0003682 Gene3D:1.10.10.60 SUPFAM:SSF46689
HSSP:O49397 InterPro:IPR017930 InterPro:IPR006447
TIGRFAMs:TIGR01557 PROSITE:PS51294 HOGENOM:HOG000237574
ProtClustDB:CLSN2687960 EMBL:AF326890 EMBL:AF339707 EMBL:AF372906
EMBL:BT002674 IPI:IPI00533337 RefSeq:NP_564236.1 UniGene:At.25159
ProteinModelPortal:Q9FPE8 SMR:Q9FPE8 IntAct:Q9FPE8 STRING:Q9FPE8
PRIDE:Q9FPE8 EnsemblPlants:AT1G25550.1 GeneID:839142
KEGG:ath:AT1G25550 TAIR:At1g25550 InParanoid:Q9FPE8 OMA:ECSERTT
PhylomeDB:Q9FPE8 ArrayExpress:Q9FPE8 Genevestigator:Q9FPE8
Uniprot:Q9FPE8
Length = 344
Score = 159 (61.0 bits), Expect = 4.0e-10, P = 4.0e-10
Identities = 39/105 (37%), Positives = 58/105 (55%)
Query: 129 SVNEGTSNSRKDEEEEAEKRLKKPRLVWSVELHQQFVSAVKELGFDK-AGPKKILELMNI 187
S E ++ EE++ +K R WS ELH++F+ A+++LG A PK+I +LM +
Sbjct: 187 STAETVGGGKEFEEQKQSHSNRKQRRCWSPELHRRFLHALQQLGGSHVATPKQIRDLMKV 246
Query: 188 PGLTRENVASHLQKHRLY-------LSRLSGVSPQQGNSFVSSNI 225
GLT + V SHLQK+RL+ + R G +PQQ V I
Sbjct: 247 DGLTNDEVKSHLQKYRLHTRRPATPVVRTGGENPQQRQFMVMEGI 291
>TAIR|locus:2157146 [details] [associations]
symbol:AT5G45580 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=TAS] InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249
EMBL:CP002688 GO:GO:0003677 GO:GO:0003700 GO:GO:0003682
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR025756
InterPro:IPR017930 InterPro:IPR006447 Pfam:PF14379
TIGRFAMs:TIGR01557 PROSITE:PS51294 IPI:IPI00931042
RefSeq:NP_199371.2 UniGene:At.50506 ProteinModelPortal:F4KEK2
SMR:F4KEK2 PRIDE:F4KEK2 DNASU:834596 EnsemblPlants:AT5G45580.1
GeneID:834596 KEGG:ath:AT5G45580 OMA:YQIEVQR Uniprot:F4KEK2
Length = 264
Score = 154 (59.3 bits), Expect = 9.9e-10, P = 9.9e-10
Identities = 31/55 (56%), Positives = 41/55 (74%)
Query: 151 KPRLVWSVELHQQFVSAVKELG-FDKAGPKKILELMNIPGLTRENVASHLQKHRL 204
KPRL W+ +LH +FV AV +LG DKA PK +L+LM + GLT ++ SHLQK+RL
Sbjct: 7 KPRLRWTADLHDRFVDAVAKLGGADKATPKSVLKLMGLKGLTLYHLKSHLQKYRL 61
>TIGR_CMR|GSU_1495 [details] [associations]
symbol:GSU_1495 "sigma-54 dependent DNA-binding response
regulator" species:243231 "Geobacter sulfurreducens PCA"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PRINTS:PR01590
PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382 SMART:SM00448
GO:GO:0005524 GO:GO:0035556 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000058489
InterPro:IPR025662 InterPro:IPR025943 InterPro:IPR025944
PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688 HSSP:P06143
RefSeq:NP_952546.1 ProteinModelPortal:Q74D24 GeneID:2686126
KEGG:gsu:GSU1495 PATRIC:22025837 KO:K02667 OMA:IHARAGH
ProtClustDB:CLSK828394 BioCyc:GSUL243231:GH27-1478-MONOMER
Uniprot:Q74D24
Length = 458
Score = 158 (60.7 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 38/112 (33%), Positives = 64/112 (57%)
Query: 2 GFSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLL-ELVGLEMDLPVIMMCAH 60
G++V + AE AL L + YD+VISDV MP +DG LL + + D V++M A
Sbjct: 26 GYTVDQAASAEEALACLE--RKTYDLVISDVKMPGLDGITLLGRIKEMTPDTAVLLMTAF 83
Query: 61 GSKEVVMKGVTHDACDYLTKPVRIEELKNIWQHVVRKRKNERKDLEQSGSVE 112
+ E ++ + A DY+ KP ++EE+K + ++ + KR +R++L V+
Sbjct: 84 STAEQAVEAMKLGAYDYIAKPFKVEEVKILARNALEKRDLKRENLRLRQEVQ 135
>TAIR|locus:2042927 [details] [associations]
symbol:AT2G38300 "AT2G38300" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0003677 GO:GO:0003700 GO:GO:0003682
Gene3D:1.10.10.60 SUPFAM:SSF46689 HSSP:O49397 InterPro:IPR017930
InterPro:IPR006447 TIGRFAMs:TIGR01557 PROSITE:PS51294 EMBL:BT004973
EMBL:AK117689 IPI:IPI00540370 RefSeq:NP_181364.2 UniGene:At.46670
ProteinModelPortal:Q8GYE4 SMR:Q8GYE4 IntAct:Q8GYE4 STRING:Q8GYE4
PRIDE:Q8GYE4 EnsemblPlants:AT2G38300.1 GeneID:818410
KEGG:ath:AT2G38300 TAIR:At2g38300 eggNOG:NOG310127
HOGENOM:HOG000090767 InParanoid:Q8GYE4 OMA:KDEEDRT PhylomeDB:Q8GYE4
ProtClustDB:CLSN2918908 Genevestigator:Q8GYE4 Uniprot:Q8GYE4
Length = 340
Score = 155 (59.6 bits), Expect = 1.6e-09, P = 1.6e-09
Identities = 41/105 (39%), Positives = 62/105 (59%)
Query: 110 SVEGGAQQPKPFEESDDSYSVNEG-----TSNSRKDEEEEAEK-----RLKKPRLVWSVE 159
S+EGG + + EE ++ EG +SNS +E ++ K R K PRL W+ +
Sbjct: 4 SMEGGGKTNRE-EEEEEEEEEEEGEESKVSSNSTVEESDKKTKVRPYVRSKVPRLRWTPD 62
Query: 160 LHQQFVSAVKELGF-DKAGPKKILELMNIPGLTRENVASHLQKHR 203
LH +FV AV+ LG ++A PK + ++MNI GL+ +V SHLQ +R
Sbjct: 63 LHLRFVRAVERLGGQERATPKLVRQMMNIKGLSIAHVKSHLQMYR 107
>TAIR|locus:2206415 [details] [associations]
symbol:APL "ALTERED PHLOEM DEVELOPMENT" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM;IDA]
[GO:0005739 "mitochondrion" evidence=ISM] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=TAS] [GO:0010088 "phloem development"
evidence=IMP] [GO:0010089 "xylem development" evidence=IMP]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0003682 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0010089 EMBL:AC007202 EMBL:AY045662 EMBL:AY143841
EMBL:AK316719 IPI:IPI00538563 IPI:IPI00542908 PIR:D96825
RefSeq:NP_565209.1 RefSeq:NP_849905.1 UniGene:At.23550 HSSP:O49397
ProteinModelPortal:Q9SAK5 SMR:Q9SAK5 IntAct:Q9SAK5 STRING:Q9SAK5
PRIDE:Q9SAK5 EnsemblPlants:AT1G79430.2 GeneID:844281
KEGG:ath:AT1G79430 TAIR:At1g79430 eggNOG:NOG261203
HOGENOM:HOG000239390 InParanoid:Q94AW3 OMA:CQTLAGE PhylomeDB:Q9SAK5
ProtClustDB:CLSN2689327 Genevestigator:Q9SAK5 GO:GO:0010088
InterPro:IPR025756 InterPro:IPR017930 InterPro:IPR006447
Pfam:PF14379 TIGRFAMs:TIGR01557 PROSITE:PS51294 Uniprot:Q9SAK5
Length = 358
Score = 155 (59.6 bits), Expect = 1.8e-09, P = 1.8e-09
Identities = 32/55 (58%), Positives = 41/55 (74%)
Query: 151 KPRLVWSVELHQQFVSAVKELGF-DKAGPKKILELMNIPGLTRENVASHLQKHRL 204
KPRL W+VELH++FV AV +LG DKA PK I+ +M + GLT ++ SHLQK RL
Sbjct: 34 KPRLRWTVELHERFVDAVAQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRL 88
>TAIR|locus:2063141 [details] [associations]
symbol:AT2G40260 "AT2G40260" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0003677 GO:GO:0003700 GO:GO:0003682
Gene3D:1.10.10.60 SUPFAM:SSF46689 HSSP:O49397 InterPro:IPR017930
InterPro:IPR006447 TIGRFAMs:TIGR01557 PROSITE:PS51294 EMBL:AC007020
HOGENOM:HOG000090767 IPI:IPI00530168 PIR:C84827 RefSeq:NP_181555.1
UniGene:At.53083 ProteinModelPortal:Q9SIZ5 SMR:Q9SIZ5 PRIDE:Q9SIZ5
EnsemblPlants:AT2G40260.1 GeneID:818618 KEGG:ath:AT2G40260
TAIR:At2g40260 eggNOG:NOG267620 InParanoid:Q9SIZ5 OMA:FRINSHE
PhylomeDB:Q9SIZ5 ProtClustDB:CLSN2913060 ArrayExpress:Q9SIZ5
Genevestigator:Q9SIZ5 Uniprot:Q9SIZ5
Length = 410
Score = 155 (59.6 bits), Expect = 2.5e-09, P = 2.5e-09
Identities = 41/113 (36%), Positives = 64/113 (56%)
Query: 99 KNERKDLEQSGSVEGGA-QQPKPFEESDDSYSVNEGTSNSRKDEEEE------AEKRLKK 151
KNE +D ++ EG ++ + ++S S S E + + D+ ++ R K
Sbjct: 24 KNE-EDKDEEDDEEGEEDEEERSGDQSPSSNSYEEESGSHHHDQNKKNGGSVRPYNRSKT 82
Query: 152 PRLVWSVELHQQFVSAVKELGF-DKAGPKKILELMNIPGLTRENVASHLQKHR 203
PRL W+ ELH F+ AV+ LG D+A PK +L+LMN+ GL+ +V SHLQ +R
Sbjct: 83 PRLRWTPELHICFLQAVERLGGPDRATPKLVLQLMNVKGLSIAHVKSHLQMYR 135
>TAIR|locus:2093726 [details] [associations]
symbol:AT3G24120 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=TAS] [GO:0000394 "RNA splicing, via endonucleolytic
cleavage and ligation" evidence=RCA] [GO:0009086 "methionine
biosynthetic process" evidence=RCA] [GO:0010048 "vernalization
response" evidence=RCA] [GO:0048573 "photoperiodism, flowering"
evidence=RCA] InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249
EMBL:CP002686 GO:GO:0003677 GO:GO:0003700 GO:GO:0003682
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR025756
InterPro:IPR017930 InterPro:IPR006447 Pfam:PF14379
TIGRFAMs:TIGR01557 PROSITE:PS51294 IPI:IPI00531757
RefSeq:NP_974356.1 UniGene:At.26588 ProteinModelPortal:F4J5D9
SMR:F4J5D9 EnsemblPlants:AT3G24120.2 GeneID:821998
KEGG:ath:AT3G24120 OMA:NLPGDAC PhylomeDB:F4J5D9 Uniprot:F4J5D9
Length = 298
Score = 152 (58.6 bits), Expect = 3.0e-09, P = 3.0e-09
Identities = 37/77 (48%), Positives = 49/77 (63%)
Query: 151 KPRLVWSVELHQQFVSAVKELGF-DKAGPKKILELMNIPGLTRENVASHLQKHRLYLSRL 209
KPRL W+ ELH++FV AV +LG DKA PK I+ M + GLT ++ SHLQK RL R
Sbjct: 41 KPRLRWTTELHERFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKFRL--GRQ 98
Query: 210 SGVSPQQGNSFVSSNIG 226
+G + NS +S +G
Sbjct: 99 AGKESTE-NSKDASCVG 114
>TAIR|locus:2026739 [details] [associations]
symbol:AT1G69580 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=TAS] [GO:0009736 "cytokinin mediated signaling pathway"
evidence=RCA] InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249
EMBL:CP002684 GO:GO:0003677 GO:GO:0003700 GO:GO:0003682
Gene3D:1.10.10.60 SUPFAM:SSF46689 HOGENOM:HOG000239390
InterPro:IPR025756 InterPro:IPR006447 Pfam:PF14379
TIGRFAMs:TIGR01557 EMBL:AC021046 IPI:IPI00846148
RefSeq:NP_001077798.1 UniGene:At.52449 ProteinModelPortal:A8MSE5
SMR:A8MSE5 PRIDE:A8MSE5 EnsemblPlants:AT1G69580.2 GeneID:843294
KEGG:ath:AT1G69580 TAIR:At1g69580 eggNOG:NOG249461 OMA:MEINNNA
PhylomeDB:A8MSE5 ProtClustDB:CLSN2699064 ArrayExpress:A8MSE5
Genevestigator:A8MSE5 Uniprot:A8MSE5
Length = 337
Score = 151 (58.2 bits), Expect = 6.1e-09, P = 6.1e-09
Identities = 29/55 (52%), Positives = 42/55 (76%)
Query: 151 KPRLVWSVELHQQFVSAVKELGF-DKAGPKKILELMNIPGLTRENVASHLQKHRL 204
KPRL W+ +LH +F+ AV +LG +KA PK ++++M IPGLT ++ SHLQK+RL
Sbjct: 34 KPRLKWTCDLHHKFIEAVNQLGGPNKATPKGLMKVMEIPGLTLYHLKSHLQKYRL 88
>TAIR|locus:2026863 [details] [associations]
symbol:AT1G68670 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0003677 "DNA binding"
evidence=ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0009737 "response to abscisic acid stimulus" evidence=IMP]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 EMBL:CP002684
GO:GO:0009737 GO:GO:0003677 GO:GO:0003700 GO:GO:0003682
Gene3D:1.10.10.60 SUPFAM:SSF46689 HSSP:O49397 InterPro:IPR017930
InterPro:IPR006447 TIGRFAMs:TIGR01557 PROSITE:PS51294 EMBL:AY063886
EMBL:AY091241 IPI:IPI00541260 RefSeq:NP_564938.1 UniGene:At.27154
ProteinModelPortal:Q8VZS3 SMR:Q8VZS3 IntAct:Q8VZS3
EnsemblPlants:AT1G68670.1 GeneID:843197 KEGG:ath:AT1G68670
TAIR:At1g68670 HOGENOM:HOG000237574 InParanoid:Q8VZS3 OMA:EHESSPE
PhylomeDB:Q8VZS3 ProtClustDB:CLSN2687960 ArrayExpress:Q8VZS3
Genevestigator:Q8VZS3 Uniprot:Q8VZS3
Length = 354
Score = 150 (57.9 bits), Expect = 9.3e-09, P = 9.3e-09
Identities = 31/85 (36%), Positives = 51/85 (60%)
Query: 130 VNEGTSNSRKDEEEEAEKRLKKPRLVWSVELHQQFVSAVKELGFDK-AGPKKILELMNIP 188
+ G R ++++ +K R WS ELH++F++A+++LG A PK+I + M +
Sbjct: 194 IKAGDEERRIEQQQSQSHTHRKQRRCWSPELHRRFLNALQQLGGSHVATPKQIRDHMKVD 253
Query: 189 GLTRENVASHLQKHRLYLSRLSGVS 213
GLT + V SHLQK+RL+ R + S
Sbjct: 254 GLTNDEVKSHLQKYRLHTRRPAATS 278
>TAIR|locus:2087740 [details] [associations]
symbol:AT3G12730 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0003677 GO:GO:0003700 GO:GO:0003682
Gene3D:1.10.10.60 SUPFAM:SSF46689 HSSP:O49397 HOGENOM:HOG000239390
InterPro:IPR025756 InterPro:IPR017930 InterPro:IPR006447
Pfam:PF14379 TIGRFAMs:TIGR01557 PROSITE:PS51294 EMBL:AY070764
EMBL:AY143916 IPI:IPI00519091 RefSeq:NP_187879.2 UniGene:At.28330
ProteinModelPortal:Q8VYI2 SMR:Q8VYI2 EnsemblPlants:AT3G12730.1
GeneID:820455 KEGG:ath:AT3G12730 TAIR:At3g12730 eggNOG:NOG317938
InParanoid:Q8VYI2 OMA:CETQEAS PhylomeDB:Q8VYI2
ProtClustDB:CLSN2917937 Genevestigator:Q8VYI2 Uniprot:Q8VYI2
Length = 235
Score = 145 (56.1 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 30/55 (54%), Positives = 39/55 (70%)
Query: 151 KPRLVWSVELHQQFVSAVKELGF-DKAGPKKILELMNIPGLTRENVASHLQKHRL 204
KPRL W+ ELH++FV AV LG +KA PK I+ +M + GLT ++ SHLQK RL
Sbjct: 23 KPRLRWTTELHERFVDAVTHLGGPEKATPKTIMRVMGVKGLTLYHLKSHLQKFRL 77
>TIGR_CMR|BA_1119 [details] [associations]
symbol:BA_1119 "DNA-binding response regulator"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0006355 GO:GO:0035556 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034819 HSSP:P08402
RefSeq:NP_843605.1 RefSeq:YP_017739.1 RefSeq:YP_027312.1
ProteinModelPortal:Q81TY2 DNASU:1089077
EnsemblBacteria:EBBACT00000010696 EnsemblBacteria:EBBACT00000017772
EnsemblBacteria:EBBACT00000019871 GeneID:1089077 GeneID:2819546
GeneID:2850009 KEGG:ban:BA_1119 KEGG:bar:GBAA_1119 KEGG:bat:BAS1040
OMA:EIDQHSA ProtClustDB:CLSK916099
BioCyc:BANT260799:GJAJ-1116-MONOMER
BioCyc:BANT261594:GJ7F-1167-MONOMER Uniprot:Q81TY2
Length = 234
Score = 144 (55.7 bits), Expect = 1.4e-08, P = 1.4e-08
Identities = 44/138 (31%), Positives = 65/138 (47%)
Query: 2 GFS-VTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVGLEMDLPVIMMCAH 60
GFS +T AE+AL + T +N YD++I DV +P GF + ++ + D P+ + A
Sbjct: 27 GFSHITTATSAEMALSL--TQQNDYDLIILDVMLPGQSGFDICPIIRQKTDCPIFFLTAK 84
Query: 61 GSKEVVMKGVTHDACDYLTKPVRIEELKNIWQHVVRKRKNERKDLEQSGSVEGGAQQPKP 120
S + G +H A DY+TKP E+ V R + R+ ++Q E A
Sbjct: 85 TSDLDKISGFSHGADDYITKPFNPLEV------VARMKAQLRRHMKQVMPHEQKAHSSSF 138
Query: 121 FEESDDSYSVNEGTSNSR 138
D YS E T N R
Sbjct: 139 GRFEIDRYSA-ELTVNGR 155
>TAIR|locus:2119425 [details] [associations]
symbol:UNE16 "unfertilized embryo sac 16" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0009567 "double fertilization forming a
zygote and endosperm" evidence=IMP] InterPro:IPR001005
InterPro:IPR009057 Pfam:PF00249 EMBL:CP002687 GO:GO:0003677
GO:GO:0003700 GO:GO:0003682 Gene3D:1.10.10.60 SUPFAM:SSF46689
InterPro:IPR025756 InterPro:IPR017930 InterPro:IPR006447
Pfam:PF14379 TIGRFAMs:TIGR01557 PROSITE:PS51294 GO:GO:0009567
IPI:IPI00657591 RefSeq:NP_001031626.1 UniGene:At.22199
ProteinModelPortal:F4JTR5 SMR:F4JTR5 PRIDE:F4JTR5
EnsemblPlants:AT4G13640.2 GeneID:826998 KEGG:ath:AT4G13640
OMA:LPIDACL PhylomeDB:F4JTR5 Uniprot:F4JTR5
Length = 295
Score = 147 (56.8 bits), Expect = 1.4e-08, P = 1.4e-08
Identities = 31/55 (56%), Positives = 39/55 (70%)
Query: 151 KPRLVWSVELHQQFVSAVKELGF-DKAGPKKILELMNIPGLTRENVASHLQKHRL 204
KPRL W+ ELH++FV AV +LG DKA PK I+ M + GLT ++ SHLQK RL
Sbjct: 37 KPRLRWTSELHERFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKFRL 91
>TIGR_CMR|GSU_0008 [details] [associations]
symbol:GSU_0008 "sensory box histidine kinase/response
regulator" species:243231 "Geobacter sulfurreducens PCA"
[GO:0000155 "phosphorelay sensor kinase activity" evidence=ISS]
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] InterPro:IPR000014 InterPro:IPR001789
InterPro:IPR003594 InterPro:IPR003661 InterPro:IPR004358
InterPro:IPR009082 Pfam:PF00072 Pfam:PF00512 Pfam:PF02518
PRINTS:PR00344 PROSITE:PS50110 PROSITE:PS50112 SMART:SM00091
SMART:SM00387 SMART:SM00388 SMART:SM00448 InterPro:IPR005467
InterPro:IPR001610 GO:GO:0005524 GO:GO:0016020 GO:GO:0006355
GO:GO:0035556 GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR
GO:GO:0023014 SMART:SM00086 TIGRFAMs:TIGR00229 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0000155
Gene3D:1.10.287.130 Gene3D:3.30.565.10 SUPFAM:SSF55874
SUPFAM:SSF47384 PROSITE:PS50109 InterPro:IPR013656 Pfam:PF08448
HSSP:P06143 RefSeq:NP_951070.1 ProteinModelPortal:Q74H84
GeneID:2688683 KEGG:gsu:GSU0008 PATRIC:22022753
HOGENOM:HOG000135130 OMA:HRFEAGR ProtClustDB:CLSK924354
BioCyc:GSUL243231:GH27-8-MONOMER Uniprot:Q74H84
Length = 516
Score = 150 (57.9 bits), Expect = 1.9e-08, P = 1.9e-08
Identities = 36/106 (33%), Positives = 60/106 (56%)
Query: 2 GFSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVGLEM-DLPVIMMCAH 60
G+ + ALD L + +D+V+ D+ MP MDG ++LE + DL VIMM AH
Sbjct: 27 GYRTMRARDGIEALDALE--RESFDLVLLDIRMPRMDGIEVLERIRDRWPDLVVIMMTAH 84
Query: 61 GSKEVVMKGVTHDACDYLTKPVRIEELKNIWQHVV---RKR-KNER 102
GS+++ ++ + A DY++KP +++K + + R R +NER
Sbjct: 85 GSEDIAVEAMKKGAVDYISKPFSSDDMKKRVERAIQFNRTRLENER 130
>TAIR|locus:2115070 [details] [associations]
symbol:AT4G37180 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0003677 "DNA binding"
evidence=ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 EMBL:CP002687
GO:GO:0003677 GO:GO:0003700 GO:GO:0003682 Gene3D:1.10.10.60
SUPFAM:SSF46689 InterPro:IPR017930 InterPro:IPR006447
TIGRFAMs:TIGR01557 PROSITE:PS51294 IPI:IPI00537470
RefSeq:NP_849513.1 UniGene:At.4657 ProteinModelPortal:F4JRB0
SMR:F4JRB0 PRIDE:F4JRB0 EnsemblPlants:AT4G37180.2 GeneID:829872
KEGG:ath:AT4G37180 OMA:SCRNDET Uniprot:F4JRB0
Length = 363
Score = 147 (56.8 bits), Expect = 2.5e-08, P = 2.5e-08
Identities = 33/88 (37%), Positives = 54/88 (61%)
Query: 122 EESDDSYSVNEGTSNSRKDEEEEAEKRLKKPRLVWSVELHQQFVSAVKELGFDK-AGPKK 180
E+S + N+ +S S +++E +R WS ELH++FV A+ LG + A PK+
Sbjct: 195 EQSHHHHQFNKPSSQSHHIQKKEQRRR-------WSQELHRKFVDALHRLGGPQVATPKQ 247
Query: 181 ILELMNIPGLTRENVASHLQKHRLYLSR 208
I +LM + GLT + V SHLQK+R+++ +
Sbjct: 248 IRDLMKVDGLTNDEVKSHLQKYRMHIRK 275
>TIGR_CMR|CPS_2786 [details] [associations]
symbol:CPS_2786 "response regulator" species:167879
"Colwellia psychrerythraea 34H" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001789
InterPro:IPR001867 InterPro:IPR016032 Pfam:PF00072 Pfam:PF00486
PROSITE:PS50110 SMART:SM00448 SMART:SM00862 GO:GO:0006355
GO:GO:0035556 GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0006351 GO:GO:0005622 EMBL:CP000083 GenomeReviews:CP000083_GR
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745
SUPFAM:SSF46894 HOGENOM:HOG000034815 KO:K02483 RefSeq:YP_269498.1
ProteinModelPortal:Q480M1 STRING:Q480M1 GeneID:3518447
KEGG:cps:CPS_2786 PATRIC:21468611 ProtClustDB:CLSK757256
BioCyc:CPSY167879:GI48-2847-MONOMER Uniprot:Q480M1
Length = 243
Score = 141 (54.7 bits), Expect = 4.4e-08, P = 4.4e-08
Identities = 46/146 (31%), Positives = 75/146 (51%)
Query: 2 GFSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLL-ELVGLEMDLPVIMMCAH 60
GF V +R ++AL L +D+VI D+ +PD+DG +L E+ + DLPVI++ A
Sbjct: 24 GFVVDHLSRGKLALTALAVPS--HDMVILDLGLPDIDGLLVLKEIRAKKNDLPVIILTAR 81
Query: 61 GSKEVVMKGVTHDACDYLTKPVRIEELKNIWQHVVRKRKNERKDLEQSGSVEGGAQQPKP 120
S + +KG+ + A DYL KP ++EL + R R ER+ L + S +
Sbjct: 82 DSIDSKVKGLDYGADDYLAKPFDMQEL------LARLRVIERR-LGTASSSMITIDRVSL 134
Query: 121 FEESDDSYSVNEGTSNSRKDEEEEAE 146
+S Y + N+ ++ E+E E
Sbjct: 135 DTKSHKVYLLQCNQVNNEQNHEQEGE 160
>TAIR|locus:2045761 [details] [associations]
symbol:AT2G01060 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=TAS] [GO:0006499 "N-terminal protein myristoylation"
evidence=RCA] [GO:0006635 "fatty acid beta-oxidation" evidence=RCA]
[GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=RCA]
[GO:0016558 "protein import into peroxisome matrix" evidence=RCA]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0003677 GO:GO:0003700 GO:GO:0003682
Gene3D:1.10.10.60 SUPFAM:SSF46689 HSSP:O49397 HOGENOM:HOG000239390
InterPro:IPR025756 InterPro:IPR017930 InterPro:IPR006447
Pfam:PF14379 TIGRFAMs:TIGR01557 PROSITE:PS51294 EMBL:AC006837
EMBL:AF370550 EMBL:AY084725 EMBL:BT000013 IPI:IPI00544604
PIR:B84420 RefSeq:NP_178216.1 UniGene:At.24449
ProteinModelPortal:Q9SJW0 SMR:Q9SJW0 EnsemblPlants:AT2G01060.1
GeneID:814630 KEGG:ath:AT2G01060 TAIR:At2g01060 eggNOG:NOG329415
InParanoid:Q9SJW0 OMA:TNELHER PhylomeDB:Q9SJW0
ProtClustDB:CLSN2683513 ArrayExpress:Q9SJW0 Genevestigator:Q9SJW0
Uniprot:Q9SJW0
Length = 286
Score = 142 (55.0 bits), Expect = 6.1e-08, P = 6.1e-08
Identities = 30/55 (54%), Positives = 40/55 (72%)
Query: 151 KPRLVWSVELHQQFVSAVKELGF-DKAGPKKILELMNIPGLTRENVASHLQKHRL 204
K RL W+ ELH++FV AV +LG D+A PK +L +M + GLT +V SHLQK+RL
Sbjct: 15 KQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRL 69
>TAIR|locus:2041539 [details] [associations]
symbol:AT2G42660 "AT2G42660" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0003677 GO:GO:0003700 GO:GO:0003682
Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:AC006931 HSSP:O49397
InterPro:IPR017930 InterPro:IPR006447 TIGRFAMs:TIGR01557
PROSITE:PS51294 EMBL:AC007087 EMBL:AY074640 EMBL:AY078938
IPI:IPI00542274 PIR:F84856 RefSeq:NP_181794.1 UniGene:At.37023
ProteinModelPortal:Q9SJJ0 SMR:Q9SJJ0 PaxDb:Q9SJJ0 PRIDE:Q9SJJ0
EnsemblPlants:AT2G42660.1 GeneID:818866 KEGG:ath:AT2G42660
TAIR:At2g42660 eggNOG:NOG258430 HOGENOM:HOG000153491 OMA:NREETVE
PhylomeDB:Q9SJJ0 ProtClustDB:CLSN2913320 ArrayExpress:Q9SJJ0
Genevestigator:Q9SJJ0 Uniprot:Q9SJJ0
Length = 255
Score = 140 (54.3 bits), Expect = 7.6e-08, P = 7.6e-08
Identities = 33/85 (38%), Positives = 50/85 (58%)
Query: 125 DDSYSVNEGTSNSRKDEEEEAEK-----RLKKPRLVWSVELHQQFVSAVKELGF-DKAGP 178
+++ N +S +DE++ R PRL W+ +LH FV AV+ LG D+A P
Sbjct: 19 EETVEKNNEEESSVEDEDQITNNVRQYIRSNMPRLRWTPDLHLSFVRAVQRLGGPDRATP 78
Query: 179 KKILELMNIPGLTRENVASHLQKHR 203
K +LE+MN+ GL+ +V SHLQ +R
Sbjct: 79 KLVLEMMNLKGLSIAHVKSHLQMYR 103
>TIGR_CMR|DET_0232 [details] [associations]
symbol:DET_0232 "DNA-binding response regulator"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072
Pfam:PF00486 PROSITE:PS50110 SMART:SM00448 SMART:SM00862
GO:GO:0006355 GO:GO:0035556 GO:GO:0003677 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0005622 EMBL:CP000027
GenomeReviews:CP000027_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0745 HOGENOM:HOG000034819
RefSeq:YP_180980.1 ProteinModelPortal:Q3Z9W9 STRING:Q3Z9W9
GeneID:3230435 KEGG:det:DET0232 PATRIC:21607535 OMA:SIRELWI
ProtClustDB:CLSK741610 BioCyc:DETH243164:GJNF-232-MONOMER
Uniprot:Q3Z9W9
Length = 227
Score = 138 (53.6 bits), Expect = 7.8e-08, P = 7.8e-08
Identities = 30/91 (32%), Positives = 56/91 (61%)
Query: 26 DIVISDVHMPDMDGFKLLELVGLEMDLPVIMMCAHGSKEVVMKGVTHDACDYLTKPVRIE 85
DI++ D+ +PDM+GF +L+ + D+P+I++ G + V++G+T A DY+TKP R
Sbjct: 48 DIILLDLGLPDMNGFDVLKQIRNFSDVPIIILTVRGDESDVVRGLTLGANDYITKPFRQM 107
Query: 86 ELKNIWQHVVRKRKNERKDLEQS-GSVEGGA 115
EL + ++ K++ +DL + G + G+
Sbjct: 108 ELLARVRRLLTKKQINGEDLSVTCGKMHFGS 138
>TAIR|locus:2148720 [details] [associations]
symbol:PHL1 "AT5G29000" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM;ISS] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 GO:GO:0005634
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0003682 Gene3D:1.10.10.60 SUPFAM:SSF46689
HSSP:O49397 InterPro:IPR025756 InterPro:IPR017930
InterPro:IPR006447 Pfam:PF14379 TIGRFAMs:TIGR01557 PROSITE:PS51294
EMBL:AC018632 EMBL:BT002344 EMBL:AY085154 IPI:IPI00527102
IPI:IPI00527253 IPI:IPI00891441 RefSeq:NP_001078629.1
RefSeq:NP_001119299.1 RefSeq:NP_568512.3 RefSeq:NP_851090.1
UniGene:At.26183 ProteinModelPortal:Q8GUN5 SMR:Q8GUN5 PRIDE:Q8GUN5
EnsemblPlants:AT5G29000.2 GeneID:833026 KEGG:ath:AT5G29000
TAIR:At5g29000 eggNOG:NOG275266 InParanoid:Q8GUN5 OMA:DSSSHNP
PhylomeDB:Q8GUN5 ProtClustDB:CLSN2680328 Genevestigator:Q8GUN5
Uniprot:Q8GUN5
Length = 413
Score = 144 (55.7 bits), Expect = 7.9e-08, P = 7.9e-08
Identities = 34/71 (47%), Positives = 47/71 (66%)
Query: 151 KPRLVWSVELHQQFVSAVKELG-FDKAGPKKILELMNIPGLTRENVASHLQKHRL--YLS 207
K R+ W+ ELH+ FV AV +LG ++A PK +L+L+N PGLT +V SHLQK+R Y
Sbjct: 231 KQRMRWTPELHEAFVEAVNQLGGSERATPKAVLKLLNNPGLTIYHVKSHLQKYRTARYKP 290
Query: 208 RLSGVS--PQQ 216
S V+ PQ+
Sbjct: 291 ETSEVTGEPQE 301
>TAIR|locus:2100880 [details] [associations]
symbol:AT3G04450 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=TAS] [GO:0016556 "mRNA modification" evidence=RCA]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 EMBL:CP002686
GO:GO:0003677 GO:GO:0003700 GO:GO:0003682 Gene3D:1.10.10.60
SUPFAM:SSF46689 InterPro:IPR025756 InterPro:IPR017930
InterPro:IPR006447 Pfam:PF14379 TIGRFAMs:TIGR01557 PROSITE:PS51294
IPI:IPI00540345 RefSeq:NP_187095.2 UniGene:At.40835
ProteinModelPortal:F4J3P7 SMR:F4J3P7 PRIDE:F4J3P7
EnsemblPlants:AT3G04450.1 GeneID:819601 KEGG:ath:AT3G04450
OMA:WPDWADQ Uniprot:F4J3P7
Length = 442
Score = 144 (55.7 bits), Expect = 9.0e-08, P = 9.0e-08
Identities = 29/60 (48%), Positives = 41/60 (68%)
Query: 145 AEKRLKKPRLVWSVELHQQFVSAVKELG-FDKAGPKKILELMNIPGLTRENVASHLQKHR 203
A K R+ W+ ELH+ FV A+ +LG ++A PK +L+L+N PGLT +V SHLQK+R
Sbjct: 232 ASSMTSKQRMRWTPELHEAFVEAINQLGGSERATPKAVLKLINSPGLTVYHVKSHLQKYR 291
>UNIPROTKB|Q4GZK8 [details] [associations]
symbol:rr3 "Type A response regulator 3" species:39946
"Oryza sativa Indica Group" [GO:0009735 "response to cytokinin
stimulus" evidence=IC] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0005634 GO:GO:0005737
GO:GO:0009735 GO:GO:0006355 GO:GO:0035556 GO:GO:0007623
GO:GO:0010114 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
eggNOG:COG0784 HOGENOM:HOG000034820 EMBL:CM000127 EMBL:AJ938072
STRING:Q4GZK8 Uniprot:Q4GZK8
Length = 131
Score = 124 (48.7 bits), Expect = 9.1e-08, P = 9.1e-08
Identities = 30/98 (30%), Positives = 57/98 (58%)
Query: 3 FSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELV--GLEM-DLPVIMMCA 59
+ VT + + AL++L ++N + ++I+D MP+M GF LL+ V E+ ++PV++M +
Sbjct: 35 YRVTTVDSGKRALEVLSLDRNVH-MIITDYCMPEMTGFDLLKRVKESAELKEIPVVLMSS 93
Query: 60 HGSKEVVMKGVTHDACDYLTKPVRIEELKNIWQHVVRK 97
S + + + A D+L KPVR ++ + V+ K
Sbjct: 94 ENSPTRIRRCLEEGAEDFLIKPVRPSDVSRLCNRVIMK 131
>TIGR_CMR|GSU_1117 [details] [associations]
symbol:GSU_1117 "response regulator" species:243231
"Geobacter sulfurreducens PCA" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034820 HSSP:P06143
RefSeq:NP_952170.1 ProteinModelPortal:Q74E47 GeneID:2686890
KEGG:gsu:GSU1117 PATRIC:22024996 OMA:ASNVIMI ProtClustDB:CLSK828188
BioCyc:GSUL243231:GH27-1119-MONOMER Uniprot:Q74E47
Length = 127
Score = 124 (48.7 bits), Expect = 9.1e-08, P = 9.1e-08
Identities = 29/99 (29%), Positives = 56/99 (56%)
Query: 2 GFSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVGLEMDLP---VIMMC 58
GF V + AL+ L+ + +++++D++MP+M+G L L P VIM+
Sbjct: 30 GFEVASVSNGFEALNYLQQRE--VNVIVTDINMPEMNGITFLR--ELNKSFPRSNVIMIT 85
Query: 59 AHGSKEVVMKGVTHDACDYLTKPVRIEELKNIWQHVVRK 97
A+G E ++ + A +Y+ KPV+++ELK+I + ++
Sbjct: 86 AYGGVESYIEAMNLGAFEYINKPVKLDELKSILTKIFKE 124
>TAIR|locus:2051572 [details] [associations]
symbol:AT2G06020 "AT2G06020" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0003677 GO:GO:0003700 GO:GO:0003682
Gene3D:1.10.10.60 SUPFAM:SSF46689 HSSP:O49397 InterPro:IPR006447
TIGRFAMs:TIGR01557 EMBL:AC006413 IPI:IPI00525998 PIR:C84474
RefSeq:NP_178659.1 UniGene:At.52657 ProteinModelPortal:Q9ZPZ8
SMR:Q9ZPZ8 EnsemblPlants:AT2G06020.1 GeneID:815156
KEGG:ath:AT2G06020 TAIR:At2g06020 eggNOG:NOG275517
HOGENOM:HOG000154034 OMA:SKITPCI PhylomeDB:Q9ZPZ8
ProtClustDB:CLSN2912993 ArrayExpress:Q9ZPZ8 Genevestigator:Q9ZPZ8
Uniprot:Q9ZPZ8
Length = 301
Score = 141 (54.7 bits), Expect = 9.4e-08, P = 9.4e-08
Identities = 44/141 (31%), Positives = 69/141 (48%)
Query: 82 VRIEELKNIWQHVVRKRKN---ERKDLE---QSGSVEGGAQQPKPFEESDDSYSVNEGTS 135
V EE + + H K+ + +++E QS + K +E+ + + EG
Sbjct: 11 VTFEENPSTYVHHHTKKASMVLSEQEIEVILQSNKETYNEKLEKNTKENAEKVGIEEGNG 70
Query: 136 NSRKDEEEEAEKRLKKPRLVWSVELHQQFVSAVKELGF-DKAGPKKILELMNIPGLTREN 194
+S K +K RL WS +LH FV+AV++LG +KA PK + E M + G+ +
Sbjct: 71 SSSKITPCIFYTSDEKARLRWSSDLHDCFVNAVEKLGGPNKATPKSVKEAMEVEGIALHH 130
Query: 195 VASHLQKHRLYLSRLSGVSPQ 215
V SHLQK RL + G + Q
Sbjct: 131 VKSHLQKFRLGKCNIRGGTNQ 151
>UNIPROTKB|Q9AE24 [details] [associations]
symbol:rprY "Transcriptional regulatory protein RprY"
species:295405 "Bacteroides fragilis YCH46" [GO:0000160
"phosphorelay signal transduction system" evidence=NAS] [GO:0003677
"DNA binding" evidence=NAS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=NAS] InterPro:IPR001789
InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0005737 GO:GO:0006355
GO:GO:0035556 GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0006351 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
GO:GO:0000160 eggNOG:COG0745 EMBL:S59000 EMBL:AP006841
GenomeReviews:AP006841_GR PIR:S33662 RefSeq:YP_101140.1
ProteinModelPortal:Q9AE24 GeneID:3084945 KEGG:bfr:BF3864
PATRIC:21053264 OMA:CVLDVMM ProtClustDB:CLSK823045 Uniprot:Q9AE24
Length = 236
Score = 138 (53.6 bits), Expect = 9.6e-08, P = 9.6e-08
Identities = 32/92 (34%), Positives = 53/92 (57%)
Query: 22 KNGYDIVISDVHMPDMDGFKLLELV-GLEMDLPVIMMCAHGSKEVVMKGVTHDACDYLTK 80
KN YD+ + DV MP DGF L + V ++P+I + A KE +++G A DY+TK
Sbjct: 49 KNKYDLCVFDVMMPKKDGFTLAQEVRAANAEIPIIFLTAKTLKEDILEGFKIGADDYITK 108
Query: 81 PVRIEELKNIWQHVVRK---RKNERKDLEQSG 109
P +EEL + ++R+ +KN+ ++ + G
Sbjct: 109 PFSMEELTFRIEAILRRVRGKKNKESNVYKIG 140
>TAIR|locus:2174063 [details] [associations]
symbol:RR23 "response regulator 23" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA;TAS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0009736 "cytokinin mediated
signaling pathway" evidence=RCA;TAS] [GO:0007623 "circadian rhythm"
evidence=RCA] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
EMBL:CP002688 GO:GO:0006355 GO:GO:0005622 GO:GO:0009736
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 IPI:IPI00547104
RefSeq:NP_201018.1 UniGene:At.55679 ProteinModelPortal:F4K554
SMR:F4K554 EnsemblPlants:AT5G62120.1 GeneID:836332
KEGG:ath:AT5G62120 OMA:KWTKPLQ PhylomeDB:F4K554 Uniprot:F4K554
Length = 145
Score = 95 (38.5 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 28/94 (29%), Positives = 48/94 (51%)
Query: 20 TNKNGYDIVISDVHMPDMDGFKLLELVGLEM-DLPVIMMCAHGSKEVVMKGVTHDACDYL 78
T N D+VI+D HMP ++G +L + + E +LPVI + + E + + C ++
Sbjct: 14 TQFNNIDVVITDYHMPGLNGVQLKKRIDEEFGNLPVIDLYRNIEHEELFRRAL---C-FM 69
Query: 79 TKPVRIEELKN---IWQHVVRKRKNERKDLEQSG 109
KP+ +L + + Q +R R N +L SG
Sbjct: 70 HKPISRRDLNSLNVVCQQALRHRMNGETNLNGSG 103
Score = 69 (29.3 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 13/40 (32%), Positives = 25/40 (62%)
Query: 133 GTSNSRKDEEEEAEKRLKKPRLVWSVELHQQFVSAVKELG 172
G+ + D+ ++ + +KP+L W+ L +F+SA+K LG
Sbjct: 101 GSGQNVTDDPDDWLRLREKPKLKWTKPLQHRFMSALKSLG 140
>TIGR_CMR|GSU_0149 [details] [associations]
symbol:GSU_0149 "sensor histidine kinase/response
regulator" species:243231 "Geobacter sulfurreducens PCA"
[GO:0000155 "phosphorelay sensor kinase activity" evidence=ISS]
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] InterPro:IPR001789 InterPro:IPR003594
InterPro:IPR003661 InterPro:IPR004358 InterPro:IPR009082
Pfam:PF00072 Pfam:PF00512 Pfam:PF02518 PRINTS:PR00344
PROSITE:PS50110 SMART:SM00387 SMART:SM00388 SMART:SM00448
InterPro:IPR005467 GO:GO:0005524 GO:GO:0016020 GO:GO:0006355
GO:GO:0035556 GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR
GO:GO:0023014 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
GO:GO:0000155 Gene3D:1.10.287.130 Gene3D:3.30.565.10
SUPFAM:SSF55874 PROSITE:PS50109 HSSP:P06143 RefSeq:NP_951211.1
ProteinModelPortal:Q74GU5 GeneID:2687911 KEGG:gsu:GSU0149
PATRIC:22023046 HOGENOM:HOG000135524 OMA:ISHKFRT
ProtClustDB:CLSK827668 BioCyc:GSUL243231:GH27-183-MONOMER
Uniprot:Q74GU5
Length = 371
Score = 142 (55.0 bits), Expect = 1.2e-07, P = 1.2e-07
Identities = 33/108 (30%), Positives = 61/108 (56%)
Query: 2 GFSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLE-LVGLEMDLPVIMMCAH 60
G+ V + E AL + + G D++++DV MP ++G +LL L +E L VI+M +
Sbjct: 35 GYRVLQAGDGEEALRLFE--RGGIDVILTDVMMPKLNGIELLRRLKEMEPTLVVIVMTGY 92
Query: 61 GSKEVVMKGVTHDACDYLTKPVRIEELKNIWQHVVRKR--KNERKDLE 106
K++++ + DA D++TKP+ + +LK + K+ K E +L+
Sbjct: 93 AEKDIILNALKADADDFITKPLNLLQLKTAVDRALDKKVLKEEIANLK 140
>TAIR|locus:2199342 [details] [associations]
symbol:APRR6 "pseudo-response regulator 6" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] InterPro:IPR001789
InterPro:IPR009057 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0006355
GO:GO:0035556 GO:GO:0003677 GO:GO:0006351 Gene3D:1.10.10.60
SUPFAM:SSF46689 EMBL:AC016447 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 InterPro:IPR006447 TIGRFAMs:TIGR01557 KO:K14491
IPI:IPI00522591 IPI:IPI01020037 PIR:E96705 RefSeq:NP_176988.4
UniGene:At.52431 ProteinModelPortal:Q9C9F6 SMR:Q9C9F6 PaxDb:Q9C9F6
PRIDE:Q9C9F6 GeneID:843150 KEGG:ath:AT1G68210 GeneFarm:4346
TAIR:At1g68210 eggNOG:NOG320519 OMA:IANIEMP Genevestigator:Q9C9F6
Uniprot:Q9C9F6
Length = 755
Score = 146 (56.5 bits), Expect = 1.2e-07, P = 1.2e-07
Identities = 27/77 (35%), Positives = 49/77 (63%)
Query: 139 KDEEEEAEKRLKKPRLVWSVELHQQFVSAVKELGFDKAGPKKILELMNIPGLTRENVASH 198
+++ +E +K + + + +W+ E H +F++A+ LG + PK ILE+MN P LT V SH
Sbjct: 210 ENKRKEWKKSVGRRKSLWNSERHMKFIAAISILGEEDFRPKSILEIMNDPNLTHRQVGSH 269
Query: 199 LQKHRLYLSRLSGVSPQ 215
LQK++ + ++S P+
Sbjct: 270 LQKYKAQIDQISYTLPR 286
Score = 134 (52.2 bits), Expect = 3.5e-06, P = 3.5e-06
Identities = 40/177 (22%), Positives = 79/177 (44%)
Query: 11 AEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVGLEMDLPVIMMCAHGSKEVVMKGV 70
A AL M+ K ++I+++ MP +D L + L+ D+P+I++ + +
Sbjct: 45 ASKALSMIEKQKKEIGLIIANIEMPHIDSHSFLNALLLK-DIPLILINPEIKTKEPSDLL 103
Query: 71 THDACDYLTKPVRIEELKNIWQHVVRKRKNERKDLEQSGSVEGGAQQPKPFEESDDSYSV 130
T AC L KP+ +++KN+WQHV K+ E K + + E + D+Y +
Sbjct: 104 TKRACFSLDKPISNDDIKNMWQHVFSKKSQELKKINITEDQENVMDK--------DTYQI 155
Query: 131 NEGTSNSRKDEEEEAEKRLKKPRLVWSVELHQQFVSAVKELGFD-KAGPKKILELMN 186
+N ++ +A ++P + + ++ F + K P +E+ N
Sbjct: 156 EAFRANLKRQRISQASLLGRRP-FIDTFSTYETFQKRKSIANVEWKTTPSYAIEIEN 211
>TAIR|locus:2010297 [details] [associations]
symbol:AT1G49560 "AT1G49560" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 EMBL:CP002684
GO:GO:0003677 GO:GO:0003700 GO:GO:0003682 Gene3D:1.10.10.60
SUPFAM:SSF46689 HSSP:O49397 InterPro:IPR017930 InterPro:IPR006447
TIGRFAMs:TIGR01557 PROSITE:PS51294 EMBL:AC011807 EMBL:AK221631
IPI:IPI00546952 PIR:B96532 RefSeq:NP_564549.1 UniGene:At.38204
ProteinModelPortal:Q9FX84 SMR:Q9FX84 EnsemblPlants:AT1G49560.1
GeneID:841380 KEGG:ath:AT1G49560 TAIR:At1g49560 InParanoid:Q9FX84
OMA:SSMEDVE PhylomeDB:Q9FX84 ProtClustDB:CLSN2917204
Genevestigator:Q9FX84 Uniprot:Q9FX84
Length = 333
Score = 141 (54.7 bits), Expect = 1.2e-07, P = 1.2e-07
Identities = 31/81 (38%), Positives = 51/81 (62%)
Query: 146 EKRLKKPRLVWSVELHQQFVSAVKELGFDK-AGPKKILELMNIPGLTRENVASHLQKHRL 204
++ L+K R W+ ELH++FV A+++LG A PK+I E M GLT + V SHLQK+RL
Sbjct: 187 QQALRKQRRCWNPELHRRFVDALQQLGGPGVATPKQIREHMQEEGLTNDEVKSHLQKYRL 246
Query: 205 YLSRLSGVSPQQGNSFVSSNI 225
++ + + + +Q + N+
Sbjct: 247 HIRKPNSNAEKQSAVVLGFNL 267
>UNIPROTKB|P0AE67 [details] [associations]
symbol:cheY species:83333 "Escherichia coli K-12"
[GO:0006473 "protein acetylation" evidence=IDA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0000156 "phosphorelay response regulator activity"
evidence=IEA] [GO:0035556 "intracellular signal transduction"
evidence=IEA] [GO:0060286 "flagellar cell motility" evidence=TAS]
[GO:0006935 "chemotaxis" evidence=IEA;IMP;TAS] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0000287 "magnesium ion binding"
evidence=IMP] [GO:0000160 "phosphorelay signal transduction system"
evidence=IEA;IDA] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 GO:GO:0005737 GO:GO:0006355 GO:GO:0035556
GO:GO:0000287 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0006935 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784 GO:GO:0000160
PDB:1BDJ PDBsum:1BDJ HOGENOM:HOG000034820 GO:GO:0006473
GO:GO:0060286 PDB:1A0O PDB:1EAY PDB:1FFG PDB:1FFS PDB:1FFW PDB:2LP4
PDBsum:1A0O PDBsum:1EAY PDBsum:1FFG PDBsum:1FFS PDBsum:1FFW
PDBsum:2LP4 EMBL:M13463 EMBL:K02175 PIR:E25195 RefSeq:NP_416396.1
RefSeq:YP_490144.1 PDB:1AB5 PDB:1AB6 PDB:1C4W PDB:1CEY PDB:1CHN
PDB:1CYE PDB:1D4Z PDB:1DJM PDB:1E6K PDB:1E6L PDB:1E6M PDB:1EHC
PDB:1F4V PDB:1FQW PDB:1HEY PDB:1JBE PDB:1KMI PDB:1MIH PDB:1U8T
PDB:1UDR PDB:1VLZ PDB:1YMU PDB:1YMV PDB:1ZDM PDB:2B1J PDB:2ID7
PDB:2ID9 PDB:2IDM PDB:3CHY PDB:3F7N PDB:3FFT PDB:3FFW PDB:3FFX
PDB:3FGZ PDB:3MYY PDB:3OLV PDB:3OLW PDB:3OLX PDB:3OLY PDB:3OO0
PDB:3OO1 PDB:3RVJ PDB:3RVK PDB:3RVL PDB:3RVM PDB:3RVN PDB:3RVO
PDB:3RVP PDB:3RVQ PDB:3RVR PDB:3RVS PDB:5CHY PDB:6CHY PDBsum:1AB5
PDBsum:1AB6 PDBsum:1C4W PDBsum:1CEY PDBsum:1CHN PDBsum:1CYE
PDBsum:1D4Z PDBsum:1DJM PDBsum:1E6K PDBsum:1E6L PDBsum:1E6M
PDBsum:1EHC PDBsum:1F4V PDBsum:1FQW PDBsum:1HEY PDBsum:1JBE
PDBsum:1KMI PDBsum:1MIH PDBsum:1U8T PDBsum:1UDR PDBsum:1VLZ
PDBsum:1YMU PDBsum:1YMV PDBsum:1ZDM PDBsum:2B1J PDBsum:2ID7
PDBsum:2ID9 PDBsum:2IDM PDBsum:3CHY PDBsum:3F7N PDBsum:3FFT
PDBsum:3FFW PDBsum:3FFX PDBsum:3FGZ PDBsum:3MYY PDBsum:3OLV
PDBsum:3OLW PDBsum:3OLX PDBsum:3OLY PDBsum:3OO0 PDBsum:3OO1
PDBsum:3RVJ PDBsum:3RVK PDBsum:3RVL PDBsum:3RVM PDBsum:3RVN
PDBsum:3RVO PDBsum:3RVP PDBsum:3RVQ PDBsum:3RVR PDBsum:3RVS
PDBsum:5CHY PDBsum:6CHY ProteinModelPortal:P0AE67 SMR:P0AE67
DIP:DIP-48237N IntAct:P0AE67 SWISS-2DPAGE:P0AE67 PRIDE:P0AE67
EnsemblBacteria:EBESCT00000000750 EnsemblBacteria:EBESCT00000017790
GeneID:12930559 GeneID:946393 KEGG:ecj:Y75_p1858 KEGG:eco:b1882
PATRIC:32119091 EchoBASE:EB0148 EcoGene:EG10150 KO:K03413
OMA:FGFVISD ProtClustDB:PRK10610 BioCyc:EcoCyc:CHEY-MONOMER
BioCyc:ECOL316407:JW1871-MONOMER EvolutionaryTrace:P0AE67
Genevestigator:P0AE67 Uniprot:P0AE67
Length = 129
Score = 122 (48.0 bits), Expect = 1.6e-07, P = 1.6e-07
Identities = 33/101 (32%), Positives = 49/101 (48%)
Query: 1 MGFSVTKCNRAEIALDML-RTNKNGYDIVISDVHMPDMDGFKLLELV---GLEMDLPVIM 56
+GF+ AE +D L + GY VISD +MP+MDG +LL+ + G LPV+M
Sbjct: 28 LGFN--NVEEAEDGVDALNKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLM 85
Query: 57 MCAHGSKEVVMKGVTHDACDYLTKPVRIEELKNIWQHVVRK 97
+ A KE ++ A Y+ KP L+ + K
Sbjct: 86 VTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFEK 126
>TAIR|locus:2163852 [details] [associations]
symbol:ATS "AT5G42630" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IMP;TAS]
[GO:0048481 "ovule development" evidence=IMP] [GO:0080060
"integument development" evidence=IGI;IMP] [GO:0005618 "cell wall"
evidence=IDA] [GO:0044212 "transcription regulatory region DNA
binding" evidence=IDA] InterPro:IPR001005 InterPro:IPR009057
Pfam:PF00249 GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0005618 GO:GO:0030154 GO:GO:0003700 GO:GO:0006351
GO:GO:0003682 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0044212
PROSITE:PS51293 HSSP:O49397 InterPro:IPR006447 TIGRFAMs:TIGR01557
PROSITE:PS51294 GO:GO:0080060 HOGENOM:HOG000241649 EMBL:AB013391
EMBL:AY048691 EMBL:BT026053 IPI:IPI00541325 IPI:IPI00892123
RefSeq:NP_001119363.1 RefSeq:NP_199077.1 UniGene:At.26412
ProteinModelPortal:Q9FJV5 SMR:Q9FJV5 STRING:Q9FJV5
EnsemblPlants:AT5G42630.1 GeneID:834270 KEGG:ath:AT5G42630
TAIR:At5g42630 eggNOG:NOG280455 InParanoid:Q9FJV5 OMA:PQIYGRD
PhylomeDB:Q9FJV5 ProtClustDB:CLSN2916355 Genevestigator:Q9FJV5
Uniprot:Q9FJV5
Length = 276
Score = 138 (53.6 bits), Expect = 1.8e-07, P = 1.8e-07
Identities = 31/73 (42%), Positives = 45/73 (61%)
Query: 146 EKRLKKPRLVWSVELHQQFVSAVKELG-FDKAGPKKILELMNIPGLTRENVASHLQKHRL 204
++ ++ PR+ W+ LH FV AV+ LG ++A PK +LELMN+ LT +V SHLQ +R
Sbjct: 100 KRSIRAPRMRWTSTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRT 159
Query: 205 YLSRLSGVSPQQG 217
G SP +G
Sbjct: 160 VKCTDKG-SPGEG 171
>TIGR_CMR|GSU_2693 [details] [associations]
symbol:GSU_2693 "response regulator" species:243231
"Geobacter sulfurreducens PCA" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034820
RefSeq:NP_953738.1 ProteinModelPortal:Q749P9 GeneID:2687548
KEGG:gsu:GSU2693 PATRIC:22028241 OMA:VEMHRAR
BioCyc:GSUL243231:GH27-2669-MONOMER Uniprot:Q749P9
Length = 128
Score = 121 (47.7 bits), Expect = 2.0e-07, P = 2.0e-07
Identities = 31/95 (32%), Positives = 50/95 (52%)
Query: 5 VTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVG-LEMDLPVIMMCAHGSK 63
VT +R A+D++R K +D+VI+D MP M+G +L V L DLPV+M+ +
Sbjct: 30 VTSASRGAEAVDIVR--KTTFDMVITDFSMPGMNGLELAAAVKELHPDLPVMMVTCEVTS 87
Query: 64 EVVMKGVTHDACDYLTKPVRIEELKNIWQHVVRKR 98
+++ C L KPV + L +H R++
Sbjct: 88 DLIEMATDVGICRVLDKPVNVGRLLADIRHFSRRK 122
>TAIR|locus:2089260 [details] [associations]
symbol:AT3G13040 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=TAS] [GO:0015996 "chlorophyll catabolic process"
evidence=RCA] InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249
EMBL:CP002686 GO:GO:0003677 GO:GO:0003700 GO:GO:0003682
Gene3D:1.10.10.60 SUPFAM:SSF46689 HSSP:O49397 InterPro:IPR025756
InterPro:IPR017930 InterPro:IPR006447 Pfam:PF14379
TIGRFAMs:TIGR01557 PROSITE:PS51294 EMBL:AY050889 EMBL:AY096674
IPI:IPI00543771 RefSeq:NP_566442.1 RefSeq:NP_974298.1
UniGene:At.11993 ProteinModelPortal:Q949U2 SMR:Q949U2 STRING:Q949U2
PRIDE:Q949U2 EnsemblPlants:AT3G13040.1 EnsemblPlants:AT3G13040.2
GeneID:820490 KEGG:ath:AT3G13040 OMA:RIEEHAK
ProtClustDB:CLSN2688327 ArrayExpress:Q949U2 Genevestigator:Q949U2
Uniprot:Q949U2
Length = 449
Score = 141 (54.7 bits), Expect = 2.2e-07, P = 2.2e-07
Identities = 30/56 (53%), Positives = 41/56 (73%)
Query: 150 KKPRLVWSVELHQQFVSAVKEL-GFDKAGPKKILELMNIPGLTRENVASHLQKHRL 204
+K R+ W+ ELH+ FV AV +L G +KA PK + +LMN+ GLT +V SHLQK+RL
Sbjct: 240 QKSRMRWTPELHESFVKAVIKLEGPEKATPKAVKKLMNVEGLTIYHVKSHLQKYRL 295
>TIGR_CMR|CPS_1260 [details] [associations]
symbol:CPS_1260 "putative nitrate/nitrite DNA-binding
response regulator" species:167879 "Colwellia psychrerythraea 34H"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=ISS]
InterPro:IPR000792 InterPro:IPR001789 InterPro:IPR016032
Pfam:PF00072 Pfam:PF00196 PRINTS:PR00038 PROSITE:PS00622
PROSITE:PS50043 PROSITE:PS50110 SMART:SM00421 SMART:SM00448
GO:GO:0035556 GO:GO:0043565 GO:GO:0003700 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0006351 GO:GO:0005622 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 SUPFAM:SSF46894 eggNOG:COG2197 HOGENOM:HOG000034813
KO:K07684 RefSeq:YP_268003.1 ProteinModelPortal:Q486L2
STRING:Q486L2 GeneID:3521261 KEGG:cps:CPS_1260 PATRIC:21465757
OMA:THKRNIK ProtClustDB:CLSK938262
BioCyc:CPSY167879:GI48-1341-MONOMER Uniprot:Q486L2
Length = 206
Score = 132 (51.5 bits), Expect = 2.9e-07, P = 2.9e-07
Identities = 43/173 (24%), Positives = 85/173 (49%)
Query: 5 VTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVG-LEMDLPVIMMCAHGSK 63
V + + AL+++++ +DIV+ D++MP+MDG +LEL+ ++D V+M+ H +K
Sbjct: 30 VGEAENGKQALELIKSLD--FDIVLMDINMPEMDGMYVLELIKEQDLDCKVLMLSMHDNK 87
Query: 64 EVVMKGVTHDACDYLTKPVRIEELKNIWQHVVRKRKNERKDLEQSGSVEGGAQQPKPFEE 123
E ++ + H A Y+ K V EL + V+ + ++ + S E +Q
Sbjct: 88 EYILGAMRHGADGYILKDVPGAELIEAIKKVISGKHYFSSEVTEILSKELAGEQRGIVTR 147
Query: 124 SDDSYS--VNEGTSNSRKDEEEEAEKRLKKPRLVWSVELHQQFVSAVKELGFD 174
+ +++G +N R +E R +VE H++ + ++LG D
Sbjct: 148 REQLVLRLISQGLNNKRIAQELNVSVR--------TVETHKRNIK--QKLGID 190
>TAIR|locus:2028346 [details] [associations]
symbol:KAN2 "AT1G32240" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0048440 "carpel development" evidence=IGI] [GO:0048481 "ovule
development" evidence=IGI] [GO:0009944 "polarity specification of
adaxial/abaxial axis" evidence=IGI] [GO:0009737 "response to
abscisic acid stimulus" evidence=RCA] [GO:0009793 "embryo
development ending in seed dormancy" evidence=RCA] [GO:0009845
"seed germination" evidence=RCA] [GO:0010162 "seed dormancy
process" evidence=RCA] InterPro:IPR001005 InterPro:IPR009057
Pfam:PF00249 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634
GO:GO:0030154 GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
GO:GO:0003682 Gene3D:1.10.10.60 SUPFAM:SSF46689 PROSITE:PS51293
GO:GO:0048481 EMBL:AC084110 HSSP:O49397 InterPro:IPR006447
TIGRFAMs:TIGR01557 PROSITE:PS51294 GO:GO:0009944
HOGENOM:HOG000241649 EMBL:AY048689 EMBL:BT029211 EMBL:AB493491
IPI:IPI00539948 RefSeq:NP_564392.1 UniGene:At.25340
ProteinModelPortal:Q9C616 SMR:Q9C616 STRING:Q9C616
EnsemblPlants:AT1G32240.1 GeneID:840116 KEGG:ath:AT1G32240
TAIR:At1g32240 eggNOG:NOG325874 InParanoid:Q9C616 OMA:SDVYENG
PhylomeDB:Q9C616 ProtClustDB:CLSN2715231 Genevestigator:Q9C616
Uniprot:Q9C616
Length = 388
Score = 138 (53.6 bits), Expect = 4.0e-07, P = 4.0e-07
Identities = 31/81 (38%), Positives = 48/81 (59%)
Query: 145 AEKRLKKPRLVWSVELHQQFVSAVKELG-FDKAGPKKILELMNIPGLTRENVASHLQKHR 203
A++ ++ PR+ W+ LH +FV AV+ LG ++A PK +LELM++ LT +V SHLQ +R
Sbjct: 207 AKRSMRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYR 266
Query: 204 LYLSRLSGVSPQQGNSFVSSN 224
+ + G S V N
Sbjct: 267 T-VKTTDKAAASSGQSDVYEN 286
>TIGR_CMR|GSU_1129 [details] [associations]
symbol:GSU_1129 "sigma-54 dependent DNA-binding response
regulator" species:243231 "Geobacter sulfurreducens PCA"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PRINTS:PR01590
PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382 SMART:SM00448
GO:GO:0005524 GO:GO:0035556 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000058489
InterPro:IPR025662 InterPro:IPR025943 InterPro:IPR025944
PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688 HSSP:P06143
RefSeq:NP_952182.1 ProteinModelPortal:Q74E35 GeneID:2687644
KEGG:gsu:GSU1129 PATRIC:22025020 OMA:YEFANII ProtClustDB:CLSK828199
BioCyc:GSUL243231:GH27-1139-MONOMER Uniprot:Q74E35
Length = 453
Score = 139 (54.0 bits), Expect = 4.0e-07, P = 4.0e-07
Identities = 34/99 (34%), Positives = 52/99 (52%)
Query: 2 GFSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVGLEMDLP-VIMMCAH 60
G +V A L ++ +DIVI+D+ +PD G +L+ V + L VI++ H
Sbjct: 28 GHAVKSAGAGSEAFQTL--TRDTFDIVITDLFLPDASGIDILKKVKEDAPLTEVILITGH 85
Query: 61 GSKEVVMKGVTHDACDYLTKPVRIEELKNIWQHVVRKRK 99
S E +K + A DY+TKP+ +ELK I V KR+
Sbjct: 86 ASAETAVKAMKEGAFDYITKPLNFDELKIIIGKAVEKRQ 124
>TAIR|locus:2204518 [details] [associations]
symbol:AT1G14600 "AT1G14600" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0003682 Gene3D:1.10.10.60 SUPFAM:SSF46689
EMBL:AC010657 InterPro:IPR017930 InterPro:IPR006447
TIGRFAMs:TIGR01557 PROSITE:PS51294 EMBL:AJ630486 EMBL:AY568658
IPI:IPI00523105 RefSeq:NP_172912.3 UniGene:At.41962
ProteinModelPortal:Q700D9 SMR:Q700D9 EnsemblPlants:AT1G14600.1
GeneID:838022 KEGG:ath:AT1G14600 TAIR:At1g14600 eggNOG:NOG329381
HOGENOM:HOG000239342 InParanoid:Q700D9 OMA:NIMNMER
Genevestigator:Q700D9 Uniprot:Q700D9
Length = 255
Score = 134 (52.2 bits), Expect = 4.5e-07, P = 4.5e-07
Identities = 32/69 (46%), Positives = 44/69 (63%)
Query: 152 PRLVWSVELHQQFVSAVKELGFD-KAGPKKILELMNIPGLTRENVASHLQKHRLYLSRLS 210
PRL W+ ELH+ FV AV LG KA PK +L++M++ GLT +V SHLQ +R L
Sbjct: 24 PRLRWTPELHRSFVHAVDLLGGQYKATPKLVLKIMDVKGLTISHVKSHLQMYRGSRITLL 83
Query: 211 GVSPQQGNS 219
G P++ +S
Sbjct: 84 G-KPEESSS 91
>TIGR_CMR|CPS_1426 [details] [associations]
symbol:CPS_1426 "transcriptional regulatory protein RstA"
species:167879 "Colwellia psychrerythraea 34H" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] InterPro:IPR001789
InterPro:IPR001867 InterPro:IPR016032 Pfam:PF00072 Pfam:PF00486
PROSITE:PS50110 SMART:SM00448 SMART:SM00862 GO:GO:0006355
GO:GO:0035556 GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0006351 GO:GO:0005622 EMBL:CP000083 GenomeReviews:CP000083_GR
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745
HOGENOM:HOG000034819 SUPFAM:SSF46894 RefSeq:YP_268169.1
ProteinModelPortal:Q485U6 STRING:Q485U6 GeneID:3518469
KEGG:cps:CPS_1426 PATRIC:21466063 ProtClustDB:CLSK749833
BioCyc:CPSY167879:GI48-1507-MONOMER Uniprot:Q485U6
Length = 248
Score = 133 (51.9 bits), Expect = 5.4e-07, P = 5.4e-07
Identities = 33/100 (33%), Positives = 54/100 (54%)
Query: 3 FSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVGLEMDLPVIMMCAHGS 62
F VT C+R + A+D++++ DIV+ D +P MDG + + V D P+IM+ A
Sbjct: 31 FKVTTCHRGDDAVDLIQSLNP--DIVLLDGMLPGMDGLDVCKTVRATFDNPIIMITARDE 88
Query: 63 KEVVMKGVTHDACDYLTKPVRIEELKNIWQHVVRKRKNER 102
+ + G+ A DY+TKPVR L + ++R+ R
Sbjct: 89 EIDEVLGLEMGADDYITKPVRARVLLARIRGLLRREDKSR 128
>UNIPROTKB|Q4GZK2 [details] [associations]
symbol:rr9 "Type A response regulator 9" species:39946
"Oryza sativa Indica Group" [GO:0009735 "response to cytokinin
stimulus" evidence=IC] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0005634 GO:GO:0009735
GO:GO:0006355 GO:GO:0035556 GO:GO:0007623 GO:GO:0009736
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784
EMBL:CM000136 EMBL:AJ938078 STRING:Q4GZK2 Uniprot:Q4GZK2
Length = 201
Score = 129 (50.5 bits), Expect = 6.3e-07, P = 6.3e-07
Identities = 37/134 (27%), Positives = 64/134 (47%)
Query: 26 DIVISDVHMPDMDGFKLLELV---GLEMDLPVIMMCAHGSKEVVMKGVTHDACDYLTKPV 82
+++I+D MP M G+ LL+ + D+PV++M + + + + A ++ KPV
Sbjct: 70 NLIITDYCMPGMTGYDLLKKIKESSYLRDIPVVIMSSDNIPSRINRCLEEGADEFFLKPV 129
Query: 83 RIEELKNIWQHVVRKRKNERKDLEQ---SGSVEGGAQQPKPFEESDDSYSVNEGTSNSRK 139
R+ ++ + H+++ R E EQ S S + P E S S S N S+ RK
Sbjct: 130 RLSDMSKLKPHILKSRCKEHYQQEQNLQSNSESNNSSNPTS-ENSSSSTSSN---SHKRK 185
Query: 140 DEEEEAEKRLKKPR 153
+EE +PR
Sbjct: 186 AVDEEILPHTIRPR 199
>TIGR_CMR|SPO_1892 [details] [associations]
symbol:SPO_1892 "C4-dicarboxylate transport
transcriptional regulatory protein DctD" species:246200 "Ruegeria
pomeroyi DSS-3" [GO:0000156 "phosphorelay response regulator
activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] [GO:0003677 "DNA binding"
evidence=ISS] [GO:0015740 "C4-dicarboxylate transport"
evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PROSITE:PS50045
PROSITE:PS50110 SMART:SM00382 SMART:SM00448 GO:GO:0005524
GO:GO:0035556 EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 GO:GO:0005622 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0017111 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000058489 InterPro:IPR025662
InterPro:IPR025944 PROSITE:PS00675 PROSITE:PS00688
RefSeq:YP_167129.1 ProteinModelPortal:Q5LS76 DNASU:3193394
GeneID:3193394 KEGG:sil:SPO1892 PATRIC:23377117 OMA:IDNTMRR
ProtClustDB:CLSK933667 Uniprot:Q5LS76
Length = 444
Score = 137 (53.3 bits), Expect = 6.9e-07, P = 6.9e-07
Identities = 37/117 (31%), Positives = 60/117 (51%)
Query: 2 GFSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLE-LVGLEMDLPVIMMCAH 60
G+ AE AL +L + G IVISD+ MP MDG + L+ L+G + LPVIM+ H
Sbjct: 28 GYDTETFASAEEALKVLGSEYPG--IVISDIKMPGMDGMQFLKKLMGADSSLPVIMITGH 85
Query: 61 GSKEVVMKGVTHDACDYLTKPVRIEELKNIWQHVVRKRK----NE--RKDLEQSGSV 111
G + ++ + A D+L KP + + ++ + R+ N R++L G +
Sbjct: 86 GDVPMAVEAMRVGAFDFLEKPFNPDRMSDLAKRASNARRLTLDNRALRRELSDGGQI 142
>TAIR|locus:2038957 [details] [associations]
symbol:AT2G20400 "AT2G20400" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0009555 "pollen development" evidence=IMP] InterPro:IPR001005
InterPro:IPR009057 Pfam:PF00249 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0009555 GO:GO:0003677 GO:GO:0003700
GO:GO:0003682 Gene3D:1.10.10.60 SUPFAM:SSF46689 HSSP:O49397
InterPro:IPR025756 InterPro:IPR017930 InterPro:IPR006447
Pfam:PF14379 TIGRFAMs:TIGR01557 PROSITE:PS51294 EMBL:BT006119
EMBL:AK118313 IPI:IPI00521384 RefSeq:NP_179630.2 UniGene:At.43867
ProteinModelPortal:Q8GXC2 SMR:Q8GXC2 PaxDb:Q8GXC2 PRIDE:Q8GXC2
EnsemblPlants:AT2G20400.1 GeneID:816559 KEGG:ath:AT2G20400
TAIR:At2g20400 eggNOG:NOG265443 HOGENOM:HOG000064669
InParanoid:Q8GXC2 OMA:ANSMENR PhylomeDB:Q8GXC2
ProtClustDB:CLSN2918042 Genevestigator:Q8GXC2 Uniprot:Q8GXC2
Length = 397
Score = 136 (52.9 bits), Expect = 7.5e-07, P = 7.5e-07
Identities = 34/85 (40%), Positives = 49/85 (57%)
Query: 134 TSNSRKDEEEEAEKRLKKPRLVWSVELHQQFVSAVKELG-FDKAGPKKILELMNIPGLTR 192
+SNS + K R+ W+ ELH+ FV AV +LG ++A PK +L+ M + GLT
Sbjct: 214 SSNSNNNSNSNNAAAAAKGRMRWTPELHEVFVDAVNQLGGSNEATPKGVLKHMKVEGLTI 273
Query: 193 ENVASHLQKHRL--YLSRLSGVSPQ 215
+V SHLQK+R Y+ S SP+
Sbjct: 274 FHVKSHLQKYRTAKYIPVPSEGSPE 298
>TAIR|locus:2041145 [details] [associations]
symbol:AT2G02060 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=TAS] InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0003677 GO:GO:0003700
GO:GO:0003682 Gene3D:1.10.10.60 SUPFAM:SSF46689 HSSP:O49397
InterPro:IPR017930 InterPro:IPR006447 TIGRFAMs:TIGR01557
PROSITE:PS51294 HOGENOM:HOG000239342 EMBL:BT008556 EMBL:BT008699
EMBL:AK229511 IPI:IPI00542007 RefSeq:NP_565281.2 UniGene:At.41520
ProteinModelPortal:Q7X887 SMR:Q7X887 EnsemblPlants:AT2G02060.1
GeneID:814737 KEGG:ath:AT2G02060 TAIR:At2g02060 eggNOG:NOG268656
InParanoid:Q7X887 OMA:WREQEHE ProtClustDB:CLSN2681500
Genevestigator:Q7X887 Uniprot:Q7X887
Length = 256
Score = 132 (51.5 bits), Expect = 8.2e-07, P = 8.2e-07
Identities = 34/88 (38%), Positives = 52/88 (59%)
Query: 133 GTSNSRKDEEEEAEKRLKKPRLVWSVELHQQFVSAVKELGFD-KAGPKKILELMNIPGLT 191
G+ N K R PRL W+ +LH+ FV AV+ LG +A PK +L++M++ GLT
Sbjct: 11 GSFNGNKFHGVRPYVRSPVPRLRWTPDLHRCFVHAVEILGGQHRATPKLVLKMMDVKGLT 70
Query: 192 RENVASHLQKHRLYLSRLSGVSPQQGNS 219
+V SHLQ +R S+L+ P++ +S
Sbjct: 71 ISHVKSHLQMYRGG-SKLTLEKPEESSS 97
>UNIPROTKB|O53894 [details] [associations]
symbol:mprA "Response regulator MprA" species:1773
"Mycobacterium tuberculosis" [GO:0000160 "phosphorelay signal
transduction system" evidence=IDA] [GO:0003677 "DNA binding"
evidence=IDA] [GO:0005618 "cell wall" evidence=IDA] [GO:0005886
"plasma membrane" evidence=IDA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IDA] [GO:0006950 "response
to stress" evidence=IEP] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=IDA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0090034 "regulation of chaperone-mediated protein complex
assembly" evidence=IDA] InterPro:IPR001789 InterPro:IPR001867
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0005886 GO:GO:0005737 GO:GO:0005618
GO:GO:0045892 GO:GO:0045893 GO:GO:0009405 GO:GO:0006950
EMBL:BX842575 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR GO:GO:0035556 GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0000160 eggNOG:COG0745
HOGENOM:HOG000034815 GO:GO:0090034 PIR:A70821 RefSeq:NP_215496.1
RefSeq:NP_335443.1 RefSeq:YP_006514341.1 HSSP:P0A5Z6
ProteinModelPortal:O53894 SMR:O53894 PRIDE:O53894
EnsemblBacteria:EBMYCT00000001458 EnsemblBacteria:EBMYCT00000070763
GeneID:13319541 GeneID:885038 GeneID:925187 KEGG:mtc:MT1009
KEGG:mtu:Rv0981 KEGG:mtv:RVBD_0981 PATRIC:18123964
TubercuList:Rv0981 KO:K07669 OMA:MLMANPR ProtClustDB:CLSK790869
Uniprot:O53894
Length = 230
Score = 130 (50.8 bits), Expect = 9.6e-07, P = 9.6e-07
Identities = 34/101 (33%), Positives = 57/101 (56%)
Query: 2 GFSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLL-ELVGLEMDLPVIMMCAH 60
G+SV + ALDM+ +++ D ++ DV MP +DG ++ +L G DLP++++ A
Sbjct: 26 GYSVELAHDGVEALDMIASDRP--DALVLDVMMPRLDGLEVCRQLRGTGDDLPILVLTAR 83
Query: 61 GSKEVVMKGVTHDACDYLTKPVRIEELKNIWQHVVRKRKNE 101
S + G+ A DYL KP +EEL + ++R+ K E
Sbjct: 84 DSVSERVAGLDAGADDYLPKPFALEELLARMRALLRRTKPE 124
>TIGR_CMR|BA_5275 [details] [associations]
symbol:BA_5275 "DNA-binding response regulator"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0006355 GO:GO:0035556 EMBL:AE016879
EMBL:AE017334 GenomeReviews:AE016879_GR GenomeReviews:AE017334_GR
GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
HOGENOM:HOG000034819 HSSP:Q9WYN0 RefSeq:NP_847454.1
RefSeq:YP_021932.1 ProteinModelPortal:Q81XG2 DNASU:1084753
EnsemblBacteria:EBBACT00000010296 EnsemblBacteria:EBBACT00000014121
GeneID:1084753 GeneID:2818753 KEGG:ban:BA_5275 KEGG:bar:GBAA_5275
PATRIC:18788180 OMA:NANILQF ProtClustDB:CLSK917582
BioCyc:BANT261594:GJ7F-5148-MONOMER Uniprot:Q81XG2
Length = 221
Score = 129 (50.5 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 24/65 (36%), Positives = 42/65 (64%)
Query: 17 MLRTNKNGYDIVISDVHMPDMDGFKLLELVGLEMDLPVIMMCAHGSKEVVMKGVTHDACD 76
+L KN YD+V+ DV +PD+DG+ + +++ + D+P+IM+ ++E +KG D
Sbjct: 38 ILLFQKNSYDLVLLDVMLPDIDGYSICKIMRGQSDVPIIMLTGLHNEESEIKGFELGIDD 97
Query: 77 YLTKP 81
Y+TKP
Sbjct: 98 YITKP 102
>TAIR|locus:505006489 [details] [associations]
symbol:KAN3 "AT4G17695" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 GO:GO:0007275
GO:GO:0005634 GO:GO:0030154 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 GO:GO:0003682
EMBL:AL161547 Gene3D:1.10.10.60 SUPFAM:SSF46689 PROSITE:PS51293
HSSP:O49397 InterPro:IPR006447 TIGRFAMs:TIGR01557 PROSITE:PS51294
EMBL:Z97344 HOGENOM:HOG000241649 EMBL:AY048690 IPI:IPI00544036
RefSeq:NP_567535.1 UniGene:At.26411 ProteinModelPortal:Q941I2
SMR:Q941I2 PaxDb:Q941I2 PRIDE:Q941I2 EnsemblPlants:AT4G17695.1
GeneID:827490 KEGG:ath:AT4G17695 TAIR:At4g17695 eggNOG:NOG253351
InParanoid:Q941I2 OMA:SSNENEW PhylomeDB:Q941I2
ProtClustDB:CLSN2917571 Genevestigator:Q941I2 Uniprot:Q941I2
Length = 322
Score = 133 (51.9 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 27/60 (45%), Positives = 41/60 (68%)
Query: 145 AEKRLKKPRLVWSVELHQQFVSAVKELG-FDKAGPKKILELMNIPGLTRENVASHLQKHR 203
A++ ++ PR+ W+ LH FV AV+ LG ++A PK +LELM++ LT +V SHLQ +R
Sbjct: 158 AKRGVRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMDVQDLTLAHVKSHLQMYR 217
>TIGR_CMR|BA_5504 [details] [associations]
symbol:BA_5504 "DNA-binding response regulator"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] InterPro:IPR001789
InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034819 HSSP:P08402
RefSeq:NP_847664.1 RefSeq:YP_022171.1 RefSeq:YP_031352.1
ProteinModelPortal:Q81K35 DNASU:1085148
EnsemblBacteria:EBBACT00000010087 EnsemblBacteria:EBBACT00000018699
EnsemblBacteria:EBBACT00000023974 GeneID:1085148 GeneID:2819097
GeneID:2848975 KEGG:ban:BA_5504 KEGG:bar:GBAA_5504 KEGG:bat:BAS5113
OMA:NMARRVK ProtClustDB:CLSK899140
BioCyc:BANT260799:GJAJ-5188-MONOMER
BioCyc:BANT261594:GJ7F-5366-MONOMER Uniprot:Q81K35
Length = 223
Score = 129 (50.5 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 32/101 (31%), Positives = 54/101 (53%)
Query: 16 DMLRTNKNGYDIVISDVHMPDMDGFKLLELVG-LEMDLPVIMMCAHGSKEVVMKGVTHDA 74
++L G D++I DV +PD DG++LL L + D+PV+M+ A + G+ A
Sbjct: 35 EVLERWNEGPDVLILDVMLPDTDGYELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGA 94
Query: 75 CDYLTKPVRIEEL----KNIWQHVVRKRKNERKDLEQSGSV 111
DY+TKP EL KN+ + V +K ++ ++G +
Sbjct: 95 DDYVTKPFNYAELILRVKNMTRRVKKKEVTVSHEVIEAGEI 135
>TIGR_CMR|DET_0135 [details] [associations]
symbol:DET_0135 "DNA-binding response regulator"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072
Pfam:PF00486 PROSITE:PS50110 SMART:SM00448 SMART:SM00862
GO:GO:0006355 GO:GO:0035556 GO:GO:0003677 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0005622 EMBL:CP000027
GenomeReviews:CP000027_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0745 HOGENOM:HOG000034819 KO:K02483
RefSeq:YP_180885.1 ProteinModelPortal:Q3ZA64 STRING:Q3ZA64
GeneID:3230499 KEGG:det:DET0135 PATRIC:21607359 OMA:CYNLAKE
ProtClustDB:CLSK837603 BioCyc:DETH243164:GJNF-135-MONOMER
Uniprot:Q3ZA64
Length = 230
Score = 129 (50.5 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 32/93 (34%), Positives = 52/93 (55%)
Query: 14 ALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVGLEMDLPVIMMCAHGSKEVVMKGVTHD 73
AL M R K +VI DV +P MDGF+L L+ E +P++M+ A S+ + G+
Sbjct: 39 ALGMYRRFKPS--LVILDVMLPGMDGFELCRLIRAESSVPILMLTARSSETDKVNGLEVG 96
Query: 74 ACDYLTKPVRIEELKNIWQHVVRKRKNERKDLE 106
A DYL+KP ++EL + ++R+ + + E
Sbjct: 97 ADDYLSKPFGMKELLARMRALLRRSQMQNSQPE 129
>TAIR|locus:2171427 [details] [associations]
symbol:KAN "KANADI" species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM;ISS;IDA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0009887 "organ morphogenesis" evidence=IMP]
[GO:0009956 "radial pattern formation" evidence=IMP] [GO:0010051
"xylem and phloem pattern formation" evidence=IMP] [GO:0010158
"abaxial cell fate specification" evidence=IMP] [GO:0048440 "carpel
development" evidence=IGI] [GO:0048481 "ovule development"
evidence=IGI] [GO:0009944 "polarity specification of
adaxial/abaxial axis" evidence=IGI] [GO:0009943 "adaxial/abaxial
axis specification" evidence=IMP] [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0003677
EMBL:AB005242 GO:GO:0003700 GO:GO:0006351 GO:GO:0003682
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0009887 PROSITE:PS51293
GO:GO:0010051 GO:GO:0048481 HSSP:O49397 InterPro:IPR006447
TIGRFAMs:TIGR01557 PROSITE:PS51294 GO:GO:0010158 GO:GO:0009944
GO:GO:0009956 EMBL:AY030192 EMBL:AY037864 EMBL:AY048688
EMBL:BT026436 IPI:IPI00535955 RefSeq:NP_568334.1 UniGene:At.6466
UniGene:At.66763 ProteinModelPortal:Q93WJ9 SMR:Q93WJ9 IntAct:Q93WJ9
STRING:Q93WJ9 PRIDE:Q93WJ9 EnsemblPlants:AT5G16560.1 GeneID:831518
KEGG:ath:AT5G16560 TAIR:At5g16560 eggNOG:NOG330873
HOGENOM:HOG000241649 InParanoid:Q93WJ9 OMA:GINGNEV PhylomeDB:Q93WJ9
ProtClustDB:CLSN2917650 Genevestigator:Q93WJ9 Uniprot:Q93WJ9
Length = 403
Score = 134 (52.2 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 29/74 (39%), Positives = 46/74 (62%)
Query: 131 NEGTSNSRKDEEEEAEKRLKKPRLVWSVELHQQFVSAVKELG-FDKAGPKKILELMNIPG 189
+ G SR + ++ ++ PR+ W+ LH +FV AV+ LG ++A PK +LELM++
Sbjct: 199 HHGMIRSRFLPKMPTKRSMRAPRMRWTSSLHARFVHAVELLGGHERATPKSVLELMDVKD 258
Query: 190 LTRENVASHLQKHR 203
LT +V SHLQ +R
Sbjct: 259 LTLAHVKSHLQMYR 272
>UNIPROTKB|Q0J235 [details] [associations]
symbol:RL9 "Probable transcription factor RL9"
species:39947 "Oryza sativa Japonica Group" [GO:0005634 "nucleus"
evidence=IDA] [GO:0010158 "abaxial cell fate specification"
evidence=IMP] [GO:0010229 "inflorescence development" evidence=IMP]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 GO:GO:0005634
GO:GO:0006355 GO:GO:0003677 GO:GO:0006351 GO:GO:0003682
Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:AP008215 InterPro:IPR006447
TIGRFAMs:TIGR01557 PROSITE:PS51294 GO:GO:0010158 GO:GO:0010229
eggNOG:NOG330873 HOGENOM:HOG000241649 EMBL:AP005904 EMBL:FJ268747
EMBL:FJ268748 RefSeq:NP_001063097.1 UniGene:Os.5597 PRIDE:Q0J235
GeneID:4346973 KEGG:osa:4346973 Gramene:Q0J235 OMA:DALPWRH
ProtClustDB:CLSN2697690 Uniprot:Q0J235
Length = 532
Score = 135 (52.6 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 30/72 (41%), Positives = 46/72 (63%)
Query: 133 GTSNSRKDEEEEAEKRLKKPRLVWSVELHQQFVSAVKELG-FDKAGPKKILELMNIPGLT 191
G SR + A++ ++ PR+ W+ LH +FV AV+ LG ++A PK +LELM++ LT
Sbjct: 306 GALASRFMPKLPAKRSMRAPRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLT 365
Query: 192 RENVASHLQKHR 203
+V SHLQ +R
Sbjct: 366 LAHVKSHLQMYR 377
>UNIPROTKB|Q4KG71 [details] [associations]
symbol:fleR "Sigma-54 dependent DNA-binding response
regulator FleR" species:220664 "Pseudomonas protegens Pf-5"
[GO:0007155 "cell adhesion" evidence=ISS] [GO:0030092 "regulation
of flagellum assembly" evidence=ISS] InterPro:IPR001789
InterPro:IPR002078 InterPro:IPR002197 InterPro:IPR003593
InterPro:IPR009057 Pfam:PF00072 Pfam:PF00158 Pfam:PF02954
PRINTS:PR01590 PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382
SMART:SM00448 GO:GO:0005524 GO:GO:0035556 GO:GO:0003677
GO:GO:0007155 GO:GO:0003700 GO:GO:0006351 GO:GO:0005622
Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:CP000076
GenomeReviews:CP000076_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG2204
HOGENOM:HOG000058489 InterPro:IPR025662 InterPro:IPR025943
InterPro:IPR025944 PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688
GO:GO:0030092 KO:K10943 OMA:FQMIIDT ProtClustDB:CLSK866333
RefSeq:YP_258762.1 ProteinModelPortal:Q4KG71 STRING:Q4KG71
GeneID:3477220 KEGG:pfl:PFL_1636 PATRIC:19872501
BioCyc:PFLU220664:GIX8-1644-MONOMER Uniprot:Q4KG71
Length = 468
Score = 134 (52.2 bits), Expect = 1.8e-06, P = 1.8e-06
Identities = 30/72 (41%), Positives = 45/72 (62%)
Query: 11 AEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELV-GLEMDLPVIMMCAHGSKEVVMKG 69
AE AL+ + + +V+SDV+MP MDG +LL L+ + LPV++M AHG+ E ++
Sbjct: 35 AEEALEAVAAEP--FSLVVSDVNMPGMDGHQLLGLLRARQPQLPVLLMTAHGAVERAVEA 92
Query: 70 VTHDACDYLTKP 81
+ A DYL KP
Sbjct: 93 MRQGAADYLVKP 104
>TIGR_CMR|DET_0170 [details] [associations]
symbol:DET_0170 "DNA-binding response regulator"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072
Pfam:PF00486 PROSITE:PS50110 SMART:SM00448 SMART:SM00862
GO:GO:0006355 GO:GO:0035556 GO:GO:0003677 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0005622 EMBL:CP000027
GenomeReviews:CP000027_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0745 HOGENOM:HOG000034819
RefSeq:YP_180918.1 ProteinModelPortal:Q3ZA31 STRING:Q3ZA31
GeneID:3230558 KEGG:det:DET0170 PATRIC:21607423 OMA:RIRVNIR
ProtClustDB:CLSK741609 BioCyc:DETH243164:GJNF-170-MONOMER
Uniprot:Q3ZA31
Length = 232
Score = 128 (50.1 bits), Expect = 1.8e-06, P = 1.8e-06
Identities = 49/193 (25%), Positives = 85/193 (44%)
Query: 7 KCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVGLEMDLPVIMMCAHGSKEVV 66
+ + E L M+ T K D +I D+ +PD+ G+++L + L +LPVI++ + +
Sbjct: 31 EASSGESGLAMVETAKP--DAIILDIGLPDISGYEVLRQIRLFSELPVIILTIRNEESDI 88
Query: 67 MKGVTHDACDYLTKPVRIEELKNIWQHVVRKRKNERKDLE-QSGSVEGGAQQPKPFEESD 125
+K ++ A DYL KP R EL + + R+ + DLE + G G K ++
Sbjct: 89 VKALSLGADDYLVKPFRQMELLARIKAISRRLHSPEVDLEFECGPFHFGQSVTKLYKNDK 148
Query: 126 DSYSVN-EGT-------SNSRKDEEEEAEKRLKKPRLVWSVELHQQFVSAVKELGFD-KA 176
N EG SN R E ++ +W +++ ++ L +
Sbjct: 149 PIRLTNIEGQILYYLMRSNGRYIYNETIAQK------IWGENAYERIRVNIRHLREKIED 202
Query: 177 GPKKILELMNIPG 189
P L+NIPG
Sbjct: 203 NPSNPKFLINIPG 215
>TAIR|locus:2139865 [details] [associations]
symbol:PHR1 "phosphate starvation response 1"
species:3702 "Arabidopsis thaliana" [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0016036 "cellular response to phosphate starvation"
evidence=IMP] [GO:0055063 "sulfate ion homeostasis" evidence=IMP]
[GO:0007623 "circadian rhythm" evidence=IEP] [GO:0071486 "cellular
response to high light intensity" evidence=IMP] InterPro:IPR001005
InterPro:IPR009057 Pfam:PF00249 GO:GO:0005634 EMBL:CP002687
GO:GO:0003677 GO:GO:0007623 GO:GO:0003700 GO:GO:0003682
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0016036 HSSP:O49397
InterPro:IPR025756 InterPro:IPR017930 InterPro:IPR006447
Pfam:PF14379 TIGRFAMs:TIGR01557 PROSITE:PS51294 GO:GO:0071486
HOGENOM:HOG000064669 EMBL:AY081290 EMBL:BT002187 EMBL:AJ310799
IPI:IPI00520685 RefSeq:NP_194590.2 UniGene:At.4525
ProteinModelPortal:Q94CL7 SMR:Q94CL7 PaxDb:Q94CL7 PRIDE:Q94CL7
EnsemblPlants:AT4G28610.1 GeneID:828979 KEGG:ath:AT4G28610
TAIR:At4g28610 eggNOG:NOG275307 InParanoid:Q94CL7 OMA:EKQCKSG
PhylomeDB:Q94CL7 ProtClustDB:CLSN2915055 Genevestigator:Q94CL7
GO:GO:0055063 Uniprot:Q94CL7
Length = 409
Score = 133 (51.9 bits), Expect = 1.8e-06, P = 1.8e-06
Identities = 27/54 (50%), Positives = 38/54 (70%)
Query: 151 KPRLVWSVELHQQFVSAVKELG-FDKAGPKKILELMNIPGLTRENVASHLQKHR 203
K R+ W+ ELH+ FV AV LG ++A PK +L++M + GLT +V SHLQK+R
Sbjct: 225 KARMRWTPELHEAFVEAVNSLGGSERATPKGVLKIMKVEGLTIYHVKSHLQKYR 278
>TIGR_CMR|BA_3900 [details] [associations]
symbol:BA_3900 "lantibiotic biosynthesis DNA-binding
response regulator, putative" species:198094 "Bacillus anthracis
str. Ames" [GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] [GO:0003677 "DNA binding" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0017000 "antibiotic biosynthetic process" evidence=ISS]
InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486
PROSITE:PS50110 SMART:SM00448 SMART:SM00862 GO:GO:0006355
GO:GO:0035556 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003677 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034819 HSSP:Q9WYN0 RefSeq:NP_846147.1
RefSeq:YP_020538.1 RefSeq:YP_029866.1 ProteinModelPortal:Q81WR8
DNASU:1087972 EnsemblBacteria:EBBACT00000012233
EnsemblBacteria:EBBACT00000017950 EnsemblBacteria:EBBACT00000020089
GeneID:1087972 GeneID:2814840 GeneID:2849516 KEGG:ban:BA_3900
KEGG:bar:GBAA_3900 KEGG:bat:BAS3613 OMA:TAIVEHI
ProtClustDB:CLSK907876 BioCyc:BANT260799:GJAJ-3672-MONOMER
BioCyc:BANT261594:GJ7F-3789-MONOMER Uniprot:Q81WR8
Length = 220
Score = 127 (49.8 bits), Expect = 1.9e-06, P = 1.9e-06
Identities = 27/86 (31%), Positives = 51/86 (59%)
Query: 25 YDIVISDVHMPDMDGFKLLELVGLEMDLPVIMMCAHGSKEVVMKGVTHDACDYLTKPVRI 84
YD+++ DV MP++DGF L + + +D P++ + A ++ ++ G++ DY+TKP I
Sbjct: 45 YDLILLDVMMPEIDGFTLCKEIRDFVDSPIVFLTAKTMEKDLITGLSLGGDDYITKPFGI 104
Query: 85 EELK-NIWQHVVRKRKNERKDLEQSG 109
EL+ + HV R+ + ++ SG
Sbjct: 105 GELRARVSAHVRREHREKQNAFFLSG 130
>TIGR_CMR|SPO_1679 [details] [associations]
symbol:SPO_1679 "DNA-binding response regulator CtrA"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0000156 "phosphorelay
response regulator activity" evidence=ISS] [GO:0000160
"phosphorelay signal transduction system" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0006355 GO:GO:0035556 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0003677 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034815 RefSeq:YP_166918.1
ProteinModelPortal:Q5LST7 GeneID:3194546 KEGG:sil:SPO1679
PATRIC:23376683 KO:K13584 OMA:PDMNGHE ProtClustDB:CLSK863578
Uniprot:Q5LST7
Length = 238
Score = 128 (50.1 bits), Expect = 2.0e-06, P = 2.0e-06
Identities = 25/88 (28%), Positives = 51/88 (57%)
Query: 25 YDIVISDVHMPDMDGFKLLELVGLE-MDLPVIMMCAHGSKEVVMKGVTHDACDYLTKPVR 83
YD+++ D+++PDM+G ++L + + ++ P++++ E +KG A DYLTKP
Sbjct: 45 YDLILLDINLPDMNGHEVLRQLRMSRIETPILILSGVDDTESKIKGFGFGADDYLTKPFH 104
Query: 84 IEELKNIWQHVVRKRKNERKDLEQSGSV 111
EEL ++R+ K + + ++G +
Sbjct: 105 REELVARIHAIIRRSKGHSQSVIRTGKI 132
>TIGR_CMR|BA_0585 [details] [associations]
symbol:BA_0585 "DNA-binding response regulator"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
InterPro:IPR016032 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351 GO:GO:0005622
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
HOGENOM:HOG000034819 SUPFAM:SSF46894 HSSP:P08402 RefSeq:NP_843119.1
RefSeq:YP_017209.1 RefSeq:YP_026832.1 ProteinModelPortal:Q81VB2
DNASU:1087912 EnsemblBacteria:EBBACT00000008912
EnsemblBacteria:EBBACT00000015521 EnsemblBacteria:EBBACT00000021979
GeneID:1087912 GeneID:2818661 GeneID:2851974 KEGG:ban:BA_0585
KEGG:bar:GBAA_0585 KEGG:bat:BAS0554 OMA:YQTDIEY
ProtClustDB:CLSK2305400 BioCyc:BANT260799:GJAJ-614-MONOMER
BioCyc:BANT261594:GJ7F-640-MONOMER Uniprot:Q81VB2
Length = 223
Score = 127 (49.8 bits), Expect = 2.0e-06, P = 2.0e-06
Identities = 29/95 (30%), Positives = 52/95 (54%)
Query: 8 CNRAEIALDMLRT-NKNGYDIVISDVHMPDMDGFKLLELVGLEMDLPVIMMCAHGSKEVV 66
C +A L+ L+ + +DI++ DV MP+MDG+ + ++P+IM+ A +
Sbjct: 28 CMKATSGLEALKLIEQKDFDIILLDVMMPNMDGWDTCYQIRQISNVPIIMLTARNQNYDM 87
Query: 67 MKGVTHDACDYLTKPVRIEELKNIWQHVVRKRKNE 101
+KG+T A DY+TKP L + ++R+ K +
Sbjct: 88 VKGLTMGADDYITKPFDEHVLVARIEAILRRTKKD 122
>TIGR_CMR|BA_1312 [details] [associations]
symbol:BA_1312 "DNA-binding response regulator"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0006355 GO:GO:0035556 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034819 HSSP:P08402
RefSeq:NP_843778.1 RefSeq:YP_017926.1 RefSeq:YP_027483.1
ProteinModelPortal:Q81TG5 DNASU:1086011
EnsemblBacteria:EBBACT00000008055 EnsemblBacteria:EBBACT00000016708
EnsemblBacteria:EBBACT00000023489 GeneID:1086011 GeneID:2814757
GeneID:2850086 KEGG:ban:BA_1312 KEGG:bar:GBAA_1312 KEGG:bat:BAS1213
OMA:WDEAENG ProtClustDB:CLSK916176
BioCyc:BANT260799:GJAJ-1288-MONOMER
BioCyc:BANT261594:GJ7F-1346-MONOMER Uniprot:Q81TG5
Length = 223
Score = 127 (49.8 bits), Expect = 2.0e-06, P = 2.0e-06
Identities = 33/111 (29%), Positives = 57/111 (51%)
Query: 2 GFSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVGLEMDLPVIMMCAHG 61
G+ + + AL L T+ YD V+ D+ MP+MDG + + + D+P+I + A G
Sbjct: 27 GYEWGEAENGKEALKKLETDH--YDFVVLDIMMPEMDGLSVCKEIRKTSDVPIIFLTAKG 84
Query: 62 SKEVVMKGVTHDACDYLTKPVRIEELKNIWQHVVRK-RKNERKDLEQSGSV 111
+ + G+ A DY+ KP EL + V+R+ K E+++ Q G +
Sbjct: 85 EEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRRYTKQEQQEEIQFGPI 135
>UNIPROTKB|P14375 [details] [associations]
symbol:zraR species:83333 "Escherichia coli K-12"
[GO:0003677 "DNA binding" evidence=IEA;IDA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA;IGI;IEP;ISS]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0008134 "transcription factor binding" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0035556 "intracellular signal
transduction" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA;IDA] [GO:0000156 "phosphorelay
response regulator activity" evidence=IEA;IDA] InterPro:IPR001789
InterPro:IPR002078 InterPro:IPR002197 InterPro:IPR003593
InterPro:IPR009057 Pfam:PF00072 Pfam:PF00158 Pfam:PF02954
PRINTS:PR01590 PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382
SMART:SM00448 GO:GO:0005524 GO:GO:0005737 GO:GO:0035556 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 Gene3D:1.10.10.60
SUPFAM:SSF46689 EMBL:U00006 GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG2204
InterPro:IPR025662 InterPro:IPR025943 InterPro:IPR025944
PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688
HOGENOM:HOG000058487 EMBL:M28369 PIR:G65207 RefSeq:NP_418432.1
RefSeq:YP_491456.1 ProteinModelPortal:P14375 SMR:P14375
DIP:DIP-9980N PRIDE:P14375 EnsemblBacteria:EBESCT00000003356
EnsemblBacteria:EBESCT00000015912 GeneID:12933469 GeneID:948505
KEGG:ecj:Y75_p3192 KEGG:eco:b4004 PATRIC:32123533 EchoBASE:EB0477
EcoGene:EG10482 KO:K07713 OMA:AEVNAGH ProtClustDB:PRK10365
BioCyc:EcoCyc:HYDG-MONOMER BioCyc:ECOL316407:JW3968-MONOMER
Genevestigator:P14375 Uniprot:P14375
Length = 441
Score = 133 (51.9 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 30/88 (34%), Positives = 50/88 (56%)
Query: 2 GFSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLL-ELVGLEMDLPVIMMCAH 60
G++V N AL+ +R + +D+V+ DV M +MDG L E+ L +PV++M A+
Sbjct: 29 GYNVALANSGRQALEQVR--EQVFDLVLCDVRMAEMDGIATLKEIKALNPAIPVLIMTAY 86
Query: 61 GSKEVVMKGVTHDACDYLTKPVRIEELK 88
S E ++ + A DYL KP+ + L+
Sbjct: 87 SSVETAVEALKTGALDYLIKPLDFDNLQ 114
>TAIR|locus:2170199 [details] [associations]
symbol:AT5G06800 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=TAS] InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0003677 GO:GO:0003700
GO:GO:0003682 Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR025756
InterPro:IPR017930 InterPro:IPR006447 Pfam:PF14379
TIGRFAMs:TIGR01557 PROSITE:PS51294 EMBL:AK226644 IPI:IPI00528070
RefSeq:NP_196298.2 UniGene:At.50439 ProteinModelPortal:Q0WVU3
SMR:Q0WVU3 PRIDE:Q0WVU3 EnsemblPlants:AT5G06800.1 GeneID:830570
KEGG:ath:AT5G06800 TAIR:At5g06800 eggNOG:NOG298644
HOGENOM:HOG000241107 InParanoid:Q0WVU3 OMA:MDNINFE
ProtClustDB:CLSN2918619 Genevestigator:Q0WVU3 Uniprot:Q0WVU3
Length = 375
Score = 132 (51.5 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 37/92 (40%), Positives = 52/92 (56%)
Query: 117 QPK---PFEESDDSYSVNEGTSNSRKDEEEEAEKRLKKPRLVWSVELHQQFVSAVKELG- 172
QPK P S S+S++ G+ A + K R+ W+ +LH++FV V LG
Sbjct: 164 QPKQSHPRFSSPPSFSIHGGSM---------APNCVNKTRIRWTQDLHEKFVECVNRLGG 214
Query: 173 FDKAGPKKILELMNIPGLTRENVASHLQKHRL 204
DKA PK IL+ M+ GLT +V SHLQK+R+
Sbjct: 215 ADKATPKAILKRMDSDGLTIFHVKSHLQKYRI 246
>UNIPROTKB|Q9KT84 [details] [associations]
symbol:luxO "Regulatory protein LuxO" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0035556 "intracellular signal
transduction" evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PROSITE:PS50045
PROSITE:PS50110 SMART:SM00382 SMART:SM00448 GO:GO:0005524
GO:GO:0003677 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003700
GO:GO:0006351 GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0017111 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
eggNOG:COG2204 InterPro:IPR025943 InterPro:IPR025944
PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688 PIR:C82250
RefSeq:NP_230666.1 ProteinModelPortal:Q9KT84 DNASU:2614291
GeneID:2614291 KEGG:vch:VC1021 PATRIC:20081144 KO:K10912
OMA:HEEGREF ProtClustDB:CLSK874182 Uniprot:Q9KT84
Length = 455
Score = 133 (51.9 bits), Expect = 2.2e-06, P = 2.2e-06
Identities = 25/82 (30%), Positives = 47/82 (57%)
Query: 26 DIVISDVHMPDMDGFKLLELVGLEM-DLPVIMMCAHGSKEVVMKGVTHDACDYLTKPVRI 84
D+++ D+ +PDM G +L V + D+P++ M AHGS + ++ + H A D+L KP
Sbjct: 42 DLILLDLRLPDMTGMDVLYAVKEKSPDVPIVFMTAHGSIDTAVEAMRHGAQDFLIKPCEA 101
Query: 85 EELKNIWQHVVRKRKNERKDLE 106
+ L+ + +RK + D++
Sbjct: 102 DRLRVTVNNAIRKASKLKNDVD 123
>TIGR_CMR|VC_1021 [details] [associations]
symbol:VC_1021 "LuxO repressor protein" species:686 "Vibrio
cholerae O1 biovar El Tor" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PROSITE:PS50045
PROSITE:PS50110 SMART:SM00382 SMART:SM00448 GO:GO:0005524
GO:GO:0003677 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003700
GO:GO:0006351 GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0017111 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
eggNOG:COG2204 InterPro:IPR025943 InterPro:IPR025944
PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688 PIR:C82250
RefSeq:NP_230666.1 ProteinModelPortal:Q9KT84 DNASU:2614291
GeneID:2614291 KEGG:vch:VC1021 PATRIC:20081144 KO:K10912
OMA:HEEGREF ProtClustDB:CLSK874182 Uniprot:Q9KT84
Length = 455
Score = 133 (51.9 bits), Expect = 2.2e-06, P = 2.2e-06
Identities = 25/82 (30%), Positives = 47/82 (57%)
Query: 26 DIVISDVHMPDMDGFKLLELVGLEM-DLPVIMMCAHGSKEVVMKGVTHDACDYLTKPVRI 84
D+++ D+ +PDM G +L V + D+P++ M AHGS + ++ + H A D+L KP
Sbjct: 42 DLILLDLRLPDMTGMDVLYAVKEKSPDVPIVFMTAHGSIDTAVEAMRHGAQDFLIKPCEA 101
Query: 85 EELKNIWQHVVRKRKNERKDLE 106
+ L+ + +RK + D++
Sbjct: 102 DRLRVTVNNAIRKASKLKNDVD 123
>UNIPROTKB|Q06065 [details] [associations]
symbol:atoC "AtoC transcriptional activator; Az protein
inhibitor of ODC" species:83333 "Escherichia coli K-12" [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=IEA] [GO:0000156
"phosphorelay response regulator activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0035556 "intracellular
signal transduction" evidence=IEA] [GO:0045893 "positive regulation
of transcription, DNA-dependent" evidence=ISS;IDA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA;ISS;IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000160 "phosphorelay signal transduction system"
evidence=IEA] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PRINTS:PR01590
PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382 SMART:SM00448
GO:GO:0005524 GO:GO:0005737 GO:GO:0045893 GO:GO:0035556 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0017111 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG2204 EMBL:U17902 EMBL:L13078 PIR:B64992
RefSeq:NP_416724.1 RefSeq:YP_490461.1 ProteinModelPortal:Q06065
SMR:Q06065 DIP:DIP-9190N IntAct:Q06065 PRIDE:Q06065
EnsemblBacteria:EBESCT00000003393 EnsemblBacteria:EBESCT00000015461
GeneID:12932980 GeneID:947444 KEGG:ecj:Y75_p2183 KEGG:eco:b2220
PATRIC:32119799 EchoBASE:EB1619 EcoGene:EG11668
HOGENOM:HOG000058489 KO:K07714 OMA:EERRIIM ProtClustDB:PRK11361
BioCyc:EcoCyc:ATOC-MONOMER BioCyc:ECOL316407:JW2214-MONOMER
Genevestigator:Q06065 InterPro:IPR025662 InterPro:IPR025943
InterPro:IPR025944 PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688
Uniprot:Q06065
Length = 461
Score = 133 (51.9 bits), Expect = 2.2e-06, P = 2.2e-06
Identities = 36/110 (32%), Positives = 55/110 (50%)
Query: 2 GFSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLL-ELVGLEMDLPVIMMCAH 60
GF N AL + D+V+ D+ MP+MDG K L E+ E PVI+M A+
Sbjct: 28 GFETHCANNGRTALHLFADIHP--DVVLMDIRMPEMDGIKALKEMRSHETRTPVILMTAY 85
Query: 61 GSKEVVMKGVTHDACDYLTKPVRIEELKNIWQHVVRKR--KNERKDLEQS 108
E ++ + A DY+ KP ++EL I Q ++ + K E + L Q+
Sbjct: 86 AEVETAVEALRCGAFDYVIKPFDLDELNLIVQRALQLQSMKKEIRHLHQA 135
>UNIPROTKB|Q3JZR1 [details] [associations]
symbol:csrR "DNA-binding response regulator CsrR"
species:205921 "Streptococcus agalactiae A909" [GO:0005515 "protein
binding" evidence=IPI] InterPro:IPR001789 InterPro:IPR001867
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0006355 GO:GO:0035556 GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034815
EMBL:CP000114 RefSeq:YP_330242.1 ProteinModelPortal:Q3JZR1
EnsemblBacteria:EBSTRT00000004344 GeneID:3685998
GenomeReviews:CP000114_GR KEGG:sak:SAK_1639 PATRIC:19634591
OMA:LASVWRY ProtClustDB:CLSK634230
BioCyc:SAGA205921:GHD7-1647-MONOMER Uniprot:Q3JZR1
Length = 229
Score = 127 (49.8 bits), Expect = 2.3e-06, P = 2.3e-06
Identities = 27/86 (31%), Positives = 49/86 (56%)
Query: 25 YDIVISDVHMPDMDGFKLLELVGLEMDLPVIMMCAHGSKEVVMKGVTHDACDYLTKPVRI 84
+D+++ D+ +P+MDGF++ + E ++MM A S ++ G+ A DY+ KP I
Sbjct: 47 FDLILLDLMLPEMDGFEITRRLQAEKTTYIMMMTARDSVMDIVAGLDRGADDYIVKPFAI 106
Query: 85 EELKNIWQHVVRKRKNERKDLEQSGS 110
EEL + + R+++ E K E+ S
Sbjct: 107 EELLARVRAIFRRQEIETKTKEKGDS 132
>UNIPROTKB|A5U0E5 [details] [associations]
symbol:phoP "Putative two component system response
transcriptional positive regulator PhoP" species:419947
"Mycobacterium tuberculosis H37Ra" [GO:0042802 "identical protein
binding" evidence=IPI] InterPro:IPR001789 InterPro:IPR001867
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0006355 GO:GO:0035556 GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745 EMBL:CP000611
GenomeReviews:CP000611_GR HOGENOM:HOG000034815 KO:K02483
RefSeq:YP_001282057.1 ProteinModelPortal:A5U0E5 SMR:A5U0E5
STRING:A5U0E5 PRIDE:A5U0E5 EnsemblBacteria:EBMYCT00000067475
GeneID:5215306 KEGG:mra:MRA_0767 PATRIC:18141256 OMA:KPRILDH
ProtClustDB:CLSK790716 BioCyc:MTUB419947:GJ8N-786-MONOMER
Uniprot:A5U0E5
Length = 247
Score = 128 (50.1 bits), Expect = 2.3e-06, P = 2.3e-06
Identities = 37/105 (35%), Positives = 56/105 (53%)
Query: 2 GFSV-TKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVGLE-MDLPVIMMCA 59
GF V T N A+ ALD R + D VI DV MP MDGF +L + + +D P + + A
Sbjct: 44 GFEVYTATNGAQ-ALDRARETRP--DAVILDVMMPGMDGFGVLRRLRADGIDAPALFLTA 100
Query: 60 HGSKEVVMKGVTHDACDYLTKPVRIEELKNIWQHVVRKRKNERKD 104
S + + G+T DY+TKP +EE+ + ++R+ K+
Sbjct: 101 RDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRRAGKGNKE 145
>UNIPROTKB|P71814 [details] [associations]
symbol:phoP "Possible two component system response
transcriptional positive regulator PhoP" species:1773
"Mycobacterium tuberculosis" [GO:0005886 "plasma membrane"
evidence=IDA] [GO:0006979 "response to oxidative stress"
evidence=IMP] [GO:0009247 "glycolipid biosynthetic process"
evidence=IMP] [GO:0009405 "pathogenesis" evidence=IMP] [GO:0044315
"protein secretion by the type VII secretion system" evidence=IMP]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=IDA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IDA] InterPro:IPR001789 InterPro:IPR001867
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0005886 GO:GO:0045892 GO:GO:0045893
GO:GO:0009405 GO:GO:0006979 GenomeReviews:AL123456_GR GO:GO:0035556
GO:GO:0003677 GO:GO:0009247 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0005622 EMBL:BX842574 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034815 GO:GO:0044315 KO:K02483
OMA:KPRILDH ProtClustDB:CLSK790716 EMBL:AL123456 PIR:H70705
RefSeq:NP_215271.1 RefSeq:YP_006514104.1 PDB:3R0J PDBsum:3R0J
ProteinModelPortal:P71814 SMR:P71814
EnsemblBacteria:EBMYCT00000002360 GeneID:13318651 GeneID:888772
KEGG:mtu:Rv0757 KEGG:mtv:RVBD_0757 PATRIC:18150200
TubercuList:Rv0757 Uniprot:P71814
Length = 247
Score = 128 (50.1 bits), Expect = 2.3e-06, P = 2.3e-06
Identities = 37/105 (35%), Positives = 56/105 (53%)
Query: 2 GFSV-TKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVGLE-MDLPVIMMCA 59
GF V T N A+ ALD R + D VI DV MP MDGF +L + + +D P + + A
Sbjct: 44 GFEVYTATNGAQ-ALDRARETRP--DAVILDVMMPGMDGFGVLRRLRADGIDAPALFLTA 100
Query: 60 HGSKEVVMKGVTHDACDYLTKPVRIEELKNIWQHVVRKRKNERKD 104
S + + G+T DY+TKP +EE+ + ++R+ K+
Sbjct: 101 RDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRRAGKGNKE 145
>UNIPROTKB|Q48GE0 [details] [associations]
symbol:fleR "Sigma-54 dependent DNA-binding response
regulator FleR" species:264730 "Pseudomonas syringae pv.
phaseolicola 1448A" [GO:0007155 "cell adhesion" evidence=ISS]
[GO:0030092 "regulation of flagellum assembly" evidence=ISS]
InterPro:IPR001789 InterPro:IPR002078 InterPro:IPR002197
InterPro:IPR003593 InterPro:IPR009057 Pfam:PF00072 Pfam:PF00158
Pfam:PF02954 PRINTS:PR01590 PROSITE:PS50045 PROSITE:PS50110
SMART:SM00382 SMART:SM00448 GO:GO:0005524 GO:GO:0035556
GO:GO:0003677 GO:GO:0007155 GO:GO:0003700 GO:GO:0006351
GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0017111
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 EMBL:CP000058
GenomeReviews:CP000058_GR eggNOG:COG2204 HOGENOM:HOG000058489
InterPro:IPR025662 InterPro:IPR025943 InterPro:IPR025944
PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688 GO:GO:0030092
KO:K10943 RefSeq:YP_275543.1 ProteinModelPortal:Q48GE0
STRING:Q48GE0 GeneID:3555577 KEGG:psp:PSPPH_3385 PATRIC:19976178
OMA:FQMIIDT ProtClustDB:CLSK866333 Uniprot:Q48GE0
Length = 471
Score = 133 (51.9 bits), Expect = 2.3e-06, P = 2.3e-06
Identities = 37/111 (33%), Positives = 54/111 (48%)
Query: 2 GFSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELV-GLEMDLPVIMMCAH 60
G+ AE AL + + +VISDV+MP MDG +LL L+ LPV++M AH
Sbjct: 26 GYGYQAVGSAEEAL--VAAEAQPFSLVISDVNMPGMDGHQLLSLLRSRHPQLPVLLMTAH 83
Query: 61 GSKEVVMKGVTHDACDYLTKPVRIEELKNIWQHVVRKRKNERKDLEQSGSV 111
G+ + + + A DYL KP E K + V R + E+ G +
Sbjct: 84 GAVDRAVDAMRQGAADYLVKPF---EPKALIALVARHALGRLEPAERDGPI 131
>TIGR_CMR|BA_0571 [details] [associations]
symbol:BA_0571 "DNA-binding response regulator"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
InterPro:IPR016032 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351 GO:GO:0005622
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 SUPFAM:SSF46894
HOGENOM:HOG000034815 HSSP:P08402 RefSeq:NP_843105.1
RefSeq:YP_017194.1 RefSeq:YP_026818.1 ProteinModelPortal:Q81YR2
DNASU:1087909 EnsemblBacteria:EBBACT00000010289
EnsemblBacteria:EBBACT00000017976 EnsemblBacteria:EBBACT00000019549
GeneID:1087909 GeneID:2816056 GeneID:2852340 KEGG:ban:BA_0571
KEGG:bar:GBAA_0571 KEGG:bat:BAS0540 OMA:TQQTIRY
ProtClustDB:CLSK915864 BioCyc:BANT260799:GJAJ-600-MONOMER
BioCyc:BANT261594:GJ7F-626-MONOMER Uniprot:Q81YR2
Length = 223
Score = 126 (49.4 bits), Expect = 2.8e-06, P = 2.8e-06
Identities = 26/68 (38%), Positives = 43/68 (63%)
Query: 22 KNGYDIVISDVHMPDMDGFKLLELVGLE-MDLPVIMMCAHGSKEVVMKGVTHDACDYLTK 80
+N YD ++ DV MP+MDGF++++ + E ++ PV+ + A S E +KG+ DY+ K
Sbjct: 41 QNIYDAILLDVMMPEMDGFEVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVK 100
Query: 81 PVRIEELK 88
P + ELK
Sbjct: 101 PFQAPELK 108
>TIGR_CMR|CHY_0606 [details] [associations]
symbol:CHY_0606 "DNA-binding response regulator"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072
Pfam:PF00486 PROSITE:PS50110 SMART:SM00448 SMART:SM00862
GO:GO:0006355 GO:GO:0035556 GO:GO:0003677 EMBL:CP000141
GenomeReviews:CP000141_GR Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
eggNOG:COG0745 HOGENOM:HOG000034819 RefSeq:YP_359462.1
ProteinModelPortal:Q3AEH2 STRING:Q3AEH2 GeneID:3728152
KEGG:chy:CHY_0606 PATRIC:21274355
BioCyc:CHYD246194:GJCN-606-MONOMER Uniprot:Q3AEH2
Length = 226
Score = 126 (49.4 bits), Expect = 3.0e-06, P = 3.0e-06
Identities = 29/85 (34%), Positives = 48/85 (56%)
Query: 22 KNGYDIVISDVHMPDMDGFKLLELVGLEMDLPVIMMCAHGSKEVVMKGVTHDACDYLTKP 81
+ +D+VI D+++P DGF +L+ + D+PVI++ A G + + G T DYLTKP
Sbjct: 43 RENFDLVILDLNLPKQDGFSVLKEIKNREDVPVIILTARGEEMDKITGFTLGVDDYLTKP 102
Query: 82 VRIEELKNIWQHVVRKRKNERKDLE 106
EL + V+R+ + R + E
Sbjct: 103 FSPAELMLRIKAVLRRYRKGRGEEE 127
>UNIPROTKB|Q9KNI9 [details] [associations]
symbol:VC_2749 "Nitrogen regulation protein NR(I)"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] [GO:0006808 "regulation of nitrogen utilization"
evidence=ISS] [GO:0035556 "intracellular signal transduction"
evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
InterPro:IPR010114 Pfam:PF00072 Pfam:PF00158 Pfam:PF02954
PRINTS:PR01590 PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382
SMART:SM00448 GO:GO:0005524 GO:GO:0009399 GO:GO:0003677
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003700 GO:GO:0006351
GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0017111
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0006808
InterPro:IPR025662 InterPro:IPR025943 InterPro:IPR025944
PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688 KO:K07712
OMA:ARGQSNL GO:GO:0050906 TIGRFAMs:TIGR01818 HSSP:P41789 PIR:D82038
RefSeq:NP_232375.1 ProteinModelPortal:Q9KNI9 SMR:Q9KNI9
DNASU:2614912 GeneID:2614912 KEGG:vch:VC2749 PATRIC:20084518
ProtClustDB:CLSK874911 Uniprot:Q9KNI9
Length = 468
Score = 132 (51.5 bits), Expect = 3.1e-06, P = 3.1e-06
Identities = 30/99 (30%), Positives = 49/99 (49%)
Query: 7 KCNR-AEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVGLEM-DLPVIMMCAHGSKE 64
KC A+ +L + D+++SD+ MP MDG LL V +LPVI+M AH +
Sbjct: 31 KCETFADAESVLLALERETPDVLVSDIRMPGMDGIALLNQVHQRTPELPVIIMTAHSDLD 90
Query: 65 VVMKGVTHDACDYLTKPVRIEELKNIWQHVVRKRKNERK 103
+ A +YL KP ++E + + + + +RK
Sbjct: 91 AAVNAYQQGAFEYLPKPFDVDETLTLVERAIAHGQEQRK 129
>TIGR_CMR|VC_2749 [details] [associations]
symbol:VC_2749 "nitrogen regulation protein NR(I)"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0006808 "regulation of nitrogen utilization" evidence=ISS]
InterPro:IPR001789 InterPro:IPR002078 InterPro:IPR002197
InterPro:IPR003593 InterPro:IPR009057 InterPro:IPR010114
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PRINTS:PR01590
PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382 SMART:SM00448
GO:GO:0005524 GO:GO:0009399 GO:GO:0003677 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0003700 GO:GO:0006351 GO:GO:0005622
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0006808 InterPro:IPR025662
InterPro:IPR025943 InterPro:IPR025944 PROSITE:PS00675
PROSITE:PS00676 PROSITE:PS00688 KO:K07712 OMA:ARGQSNL GO:GO:0050906
TIGRFAMs:TIGR01818 HSSP:P41789 PIR:D82038 RefSeq:NP_232375.1
ProteinModelPortal:Q9KNI9 SMR:Q9KNI9 DNASU:2614912 GeneID:2614912
KEGG:vch:VC2749 PATRIC:20084518 ProtClustDB:CLSK874911
Uniprot:Q9KNI9
Length = 468
Score = 132 (51.5 bits), Expect = 3.1e-06, P = 3.1e-06
Identities = 30/99 (30%), Positives = 49/99 (49%)
Query: 7 KCNR-AEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVGLEM-DLPVIMMCAHGSKE 64
KC A+ +L + D+++SD+ MP MDG LL V +LPVI+M AH +
Sbjct: 31 KCETFADAESVLLALERETPDVLVSDIRMPGMDGIALLNQVHQRTPELPVIIMTAHSDLD 90
Query: 65 VVMKGVTHDACDYLTKPVRIEELKNIWQHVVRKRKNERK 103
+ A +YL KP ++E + + + + +RK
Sbjct: 91 AAVNAYQQGAFEYLPKPFDVDETLTLVERAIAHGQEQRK 129
>TIGR_CMR|GSU_1003 [details] [associations]
symbol:GSU_1003 "nitrogen regulation protein NR(I)"
species:243231 "Geobacter sulfurreducens PCA" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0006808 "regulation of nitrogen utilization" evidence=ISS]
InterPro:IPR001789 InterPro:IPR002078 InterPro:IPR002197
InterPro:IPR003593 InterPro:IPR009057 Pfam:PF00072 Pfam:PF00158
Pfam:PF02954 PRINTS:PR01590 PROSITE:PS50045 PROSITE:PS50110
SMART:SM00382 SMART:SM00448 GO:GO:0005524 GO:GO:0035556
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 GO:GO:0005622
Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000058489
InterPro:IPR025662 InterPro:IPR025943 InterPro:IPR025944
PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688 KO:K07712
HSSP:P06143 RefSeq:NP_952057.1 ProteinModelPortal:Q74EF9
GeneID:2687478 KEGG:gsu:GSU1003 PATRIC:22024778 OMA:NQVRAAD
ProtClustDB:CLSK828129 BioCyc:GSUL243231:GH27-989-MONOMER
Uniprot:Q74EF9
Length = 481
Score = 132 (51.5 bits), Expect = 3.2e-06, P = 3.2e-06
Identities = 32/99 (32%), Positives = 57/99 (57%)
Query: 2 GFSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVG-LEMDLPVIMMCAH 60
GF+V E AL ++++N+ YD+ I D+ MP G +LL+ V L+ DL +++M A
Sbjct: 27 GFTVDLARDGEEALRLIQSNE--YDLAILDIKMPGFTGLELLDKVRELKHDLLMVIMTAE 84
Query: 61 GSKEVVMKGVTHDACDYLTKPVRIEELKNIWQHVVRKRK 99
S + ++ + A DY+TKP ++ + I + V + R+
Sbjct: 85 ASMKNAVEAMKRGAYDYITKPFDLDVIDAIIEKVHKARE 123
>UNIPROTKB|Q884Y0 [details] [associations]
symbol:fleR "Sigma-54 dependent transcriptional
regulator/response regulator FleR" species:223283 "Pseudomonas
syringae pv. tomato str. DC3000" [GO:0001539 "ciliary or flagellar
motility" evidence=ISS] [GO:0030092 "regulation of flagellum
assembly" evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PRINTS:PR01590
PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382 SMART:SM00448
GO:GO:0005524 GO:GO:0035556 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0017111 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
EMBL:AE016853 GenomeReviews:AE016853_GR eggNOG:COG2204
HOGENOM:HOG000058489 InterPro:IPR025662 InterPro:IPR025943
InterPro:IPR025944 PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688
GO:GO:0001539 GO:GO:0030092 KO:K10943 OMA:FQMIIDT
ProtClustDB:CLSK866333 RefSeq:NP_791779.1 HSSP:P41789
ProteinModelPortal:Q884Y0 GeneID:1183601 KEGG:pst:PSPTO_1956
PATRIC:19995186 BioCyc:PSYR223283:GJIX-1996-MONOMER Uniprot:Q884Y0
Length = 471
Score = 131 (51.2 bits), Expect = 4.1e-06, P = 4.1e-06
Identities = 31/81 (38%), Positives = 44/81 (54%)
Query: 2 GFSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELV-GLEMDLPVIMMCAH 60
G+ AE AL + + +VISDV+MP MDG +LL L+ LPV++M AH
Sbjct: 26 GYGYQAVGSAEEAL--VAAEAQPFSLVISDVNMPGMDGHQLLSLLRSRHPQLPVLLMTAH 83
Query: 61 GSKEVVMKGVTHDACDYLTKP 81
G+ + + + A DYL KP
Sbjct: 84 GAVDRAVDAMRQGAADYLVKP 104
>UNIPROTKB|Q3ADA5 [details] [associations]
symbol:cheY2 "Chemotaxis protein CheY" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0006935 "chemotaxis"
evidence=ISS] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 GO:GO:0006355 GO:GO:0035556 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0005622 GO:GO:0006935 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784
HOGENOM:HOG000034820 KO:K03413 RefSeq:YP_359879.1
ProteinModelPortal:Q3ADA5 STRING:Q3ADA5 GeneID:3726250
KEGG:chy:CHY_1032 PATRIC:21275199 OMA:AGANFYL
BioCyc:CHYD246194:GJCN-1031-MONOMER Uniprot:Q3ADA5
Length = 118
Score = 108 (43.1 bits), Expect = 6.3e-06, P = 6.3e-06
Identities = 30/88 (34%), Positives = 47/88 (53%)
Query: 2 GFSVTKCNRAEIALDMLRTNKNG-YDIVISDVHMPDMDGFKLLELVG-LEMDLPVIMMCA 59
GFS + A L+ L NG +D++ DV+MP MDG+ + V + + LPVI++
Sbjct: 22 GFS-WEVEEAVNGLEALEKVLNGEFDLMTVDVNMPKMDGYTFVYKVREMGVSLPVILIST 80
Query: 60 HGSKEVVMKGVTHDACDYLTKPVRIEEL 87
+ +KG+ A YL KPV E++
Sbjct: 81 ESKEHDKLKGLQAGATLYLVKPVLPEQI 108
>TIGR_CMR|CHY_1032 [details] [associations]
symbol:CHY_1032 "chemotaxis protein CheY" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0006935 "chemotaxis" evidence=ISS] InterPro:IPR001789
Pfam:PF00072 PROSITE:PS50110 SMART:SM00448 GO:GO:0006355
GO:GO:0035556 EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0005622
GO:GO:0006935 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
eggNOG:COG0784 HOGENOM:HOG000034820 KO:K03413 RefSeq:YP_359879.1
ProteinModelPortal:Q3ADA5 STRING:Q3ADA5 GeneID:3726250
KEGG:chy:CHY_1032 PATRIC:21275199 OMA:AGANFYL
BioCyc:CHYD246194:GJCN-1031-MONOMER Uniprot:Q3ADA5
Length = 118
Score = 108 (43.1 bits), Expect = 6.3e-06, P = 6.3e-06
Identities = 30/88 (34%), Positives = 47/88 (53%)
Query: 2 GFSVTKCNRAEIALDMLRTNKNG-YDIVISDVHMPDMDGFKLLELVG-LEMDLPVIMMCA 59
GFS + A L+ L NG +D++ DV+MP MDG+ + V + + LPVI++
Sbjct: 22 GFS-WEVEEAVNGLEALEKVLNGEFDLMTVDVNMPKMDGYTFVYKVREMGVSLPVILIST 80
Query: 60 HGSKEVVMKGVTHDACDYLTKPVRIEEL 87
+ +KG+ A YL KPV E++
Sbjct: 81 ESKEHDKLKGLQAGATLYLVKPVLPEQI 108
>TIGR_CMR|CHY_1855 [details] [associations]
symbol:CHY_1855 "sigma-54 dependent transcriptional
regulator/response regulator" species:246194 "Carboxydothermus
hydrogenoformans Z-2901" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PRINTS:PR01590
PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382 SMART:SM00448
GO:GO:0005524 GO:GO:0035556 GO:GO:0003677 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0003700 GO:GO:0006351 GO:GO:0005622
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG2204
HOGENOM:HOG000058489 InterPro:IPR025662 InterPro:IPR025944
PROSITE:PS00675 PROSITE:PS00688 RefSeq:YP_360675.1
ProteinModelPortal:Q3AB09 STRING:Q3AB09 GeneID:3727631
KEGG:chy:CHY_1855 PATRIC:21276809 KO:K02481 OMA:NTRELFH
ProtClustDB:CLSK928866 BioCyc:CHYD246194:GJCN-1854-MONOMER
Uniprot:Q3AB09
Length = 443
Score = 129 (50.5 bits), Expect = 6.5e-06, P = 6.5e-06
Identities = 33/99 (33%), Positives = 52/99 (52%)
Query: 2 GFSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVG-LEMDLPVIMMCAH 60
G+ V E AL L+ + + + I D+ MP +DG +LL+ L+ +L VI++ H
Sbjct: 28 GYEVKGAATGEEALQFLK--EETFHLAIFDIKMPGIDGIELLQRARQLDENLQVIILTGH 85
Query: 61 GSKEVVMKGVTHDACDYLTKPVRIEELKNIWQHVVRKRK 99
G+ E + + A DYLTKP + EL+ Q KR+
Sbjct: 86 GTIESAIGAMKLGAYDYLTKPCNLAELEITLQKAYEKRQ 124
>TIGR_CMR|GSU_0280 [details] [associations]
symbol:GSU_0280 "transcriptional regulator, Fis family"
species:243231 "Geobacter sulfurreducens PCA" [GO:0003677 "DNA
binding" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PRINTS:PR01590
PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382 SMART:SM00448
GO:GO:0005524 GO:GO:0035556 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000058489
RefSeq:NP_951341.1 ProteinModelPortal:Q74GG5 GeneID:2687472
KEGG:gsu:GSU0280 PATRIC:22023302 OMA:ISTFETR
BioCyc:GSUL243231:GH27-330-MONOMER Uniprot:Q74GG5
Length = 450
Score = 129 (50.5 bits), Expect = 6.6e-06, P = 6.6e-06
Identities = 34/99 (34%), Positives = 56/99 (56%)
Query: 1 MGFS--VTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVGLEM-DLPVIMM 57
M FS ++ C+ E A+ M+R D+V+SD+ MP MDG L L+ E+ DLPV++
Sbjct: 28 MHFSRVLSACDGKE-AMRMIRAECP--DVVVSDIRMPAMDGLTLASLLKTELPDLPVVLC 84
Query: 58 CAHGSKEVVMKGVTHDACDYLTKPVRIEELKNIWQHVVR 96
A + ++K + Y++KP+ +E+L QH +R
Sbjct: 85 TALHETDHLLKAIELGVAAYVSKPIDLEKL----QHAIR 119
>TIGR_CMR|GSU_0451 [details] [associations]
symbol:GSU_0451 "DNA-binding response regulator"
species:243231 "Geobacter sulfurreducens PCA" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486
PROSITE:PS50110 SMART:SM00448 SMART:SM00862 GO:GO:0006355
GO:GO:0035556 GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034815 HSSP:Q9WYN0
RefSeq:NP_951510.1 ProteinModelPortal:Q74G01 GeneID:2686349
KEGG:gsu:GSU0451 PATRIC:22023646 OMA:MRRSELD ProtClustDB:CLSK827838
BioCyc:GSUL243231:GH27-442-MONOMER Uniprot:Q74G01
Length = 224
Score = 123 (48.4 bits), Expect = 6.9e-06, P = 6.9e-06
Identities = 28/80 (35%), Positives = 46/80 (57%)
Query: 24 GYDIVISDVHMPDMDGFKLL-ELVGLEMDLPVIMMCAHGSKEVVMKGVTHDACDYLTKPV 82
GYD+++ DV +P DG ++ EL + PV+M+ A S E ++ G+ + DYLTKP
Sbjct: 44 GYDLIVLDVMLPKKDGLSVVRELRERKNSTPVLMLTAKDSVEDIVAGLDSGSDDYLTKPF 103
Query: 83 RIEELKNIWQHVVRKRKNER 102
EL + +VR+ + +R
Sbjct: 104 AFAELLARVRALVRRSEQDR 123
>TIGR_CMR|CJE_1664 [details] [associations]
symbol:CJE_1664 "DNA-binding response regulator"
species:195099 "Campylobacter jejuni RM1221" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] InterPro:IPR001789
InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622
EMBL:CP000025 GenomeReviews:CP000025_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745
HOGENOM:HOG000034819 RefSeq:YP_179645.1 ProteinModelPortal:Q5HSU0
STRING:Q5HSU0 GeneID:3232292 KEGG:cjr:CJE1664 PATRIC:20045123
OMA:KRNICEL ProtClustDB:CLSK879286
BioCyc:CJEJ195099:GJC0-1694-MONOMER Uniprot:Q5HSU0
Length = 226
Score = 123 (48.4 bits), Expect = 7.1e-06, P = 7.1e-06
Identities = 24/74 (32%), Positives = 46/74 (62%)
Query: 26 DIVISDVHMPDMDGFKLL-ELVGLEMDLPVIMMCAHGSKEVVMKGVTHDACDYLTKPVRI 84
D+VI+D+ MP MDG + E+ + D+P++++ A+ KE +++ + YL KPV I
Sbjct: 53 DLVITDIAMPIMDGLDMAREIKEISDDVPIVVLSAYSEKERLLRSIDIGIDKYLIKPVDI 112
Query: 85 EELKNIWQHVVRKR 98
EEL + +++ ++
Sbjct: 113 EELFKVLDYLIGEK 126
>TIGR_CMR|GSU_2219 [details] [associations]
symbol:GSU_2219 "response regulator" species:243231
"Geobacter sulfurreducens PCA" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034820 HSSP:P08402
RefSeq:NP_953268.1 ProteinModelPortal:Q74AY0 GeneID:2685652
KEGG:gsu:GSU2219 PATRIC:22027293 OMA:VMLTAKK ProtClustDB:CLSK828762
BioCyc:GSUL243231:GH27-2166-MONOMER Uniprot:Q74AY0
Length = 123
Score = 107 (42.7 bits), Expect = 8.1e-06, P = 8.1e-06
Identities = 27/94 (28%), Positives = 49/94 (52%)
Query: 2 GFSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVGLEMD---LPVIMMC 58
G++V + ALD + D++I D+ +P MDGF++ +++ + +PV+M+
Sbjct: 27 GYAVAGVTDGKSALDYIAATPP--DLIILDIMLPGMDGFEVCQMIKADPSTRHIPVVMLT 84
Query: 59 AHGSKEVVMKGVTHDACDYLTKPVRIEELKNIWQ 92
A S + KG+ A Y+TKP + + I Q
Sbjct: 85 AKKSTQDRDKGLEAGASAYVTKPFKSARIIEIIQ 118
>TIGR_CMR|GSU_0963 [details] [associations]
symbol:GSU_0963 "sigma-54 dependent DNA-binding response
regulator" species:243231 "Geobacter sulfurreducens PCA"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PRINTS:PR01590
PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382 SMART:SM00448
GO:GO:0005524 GO:GO:0035556 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000058489
InterPro:IPR025662 InterPro:IPR025944 PROSITE:PS00675
PROSITE:PS00688 HSSP:P06143 RefSeq:NP_952017.2 GeneID:2687572
KEGG:gsu:GSU0963 PATRIC:22024702 ProtClustDB:CLSK828118
BioCyc:GSUL243231:GH27-974-MONOMER Uniprot:Q74EJ9
Length = 464
Score = 128 (50.1 bits), Expect = 9.1e-06, P = 9.1e-06
Identities = 34/111 (30%), Positives = 63/111 (56%)
Query: 2 GFSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVGLEMDL-PVIMMCAH 60
G++V R+ A++ + +D+V+SD+ MP MDG ++L+ + + L PVIM+ A+
Sbjct: 28 GYAVKGYTRSFEAVEEFKAGD--WDLVVSDIKMPGMDGLEVLQRIKAKDPLVPVIMITAY 85
Query: 61 GSKEVVMKGVTHDACDYLTKPVRIEEL----KNIWQH--VVRKRKNERKDL 105
+ E ++ + A D +TKP EEL KN +H ++ + + R++L
Sbjct: 86 ATVETSIQALRRGAYDMVTKPFEPEELLYRVKNALKHTQLLEENRELREEL 136
>TIGR_CMR|DET_0177 [details] [associations]
symbol:DET_0177 "DNA-binding response regulator"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072
Pfam:PF00486 PROSITE:PS50110 SMART:SM00448 SMART:SM00862
GO:GO:0006355 GO:GO:0035556 GO:GO:0003677 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0005622 EMBL:CP000027
GenomeReviews:CP000027_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0745 HOGENOM:HOG000034815
RefSeq:YP_180925.1 ProteinModelPortal:Q3ZA24 STRING:Q3ZA24
GeneID:3230544 KEGG:det:DET0177 PATRIC:21607433 OMA:CIIKNEA
ProtClustDB:CLSK837633 BioCyc:DETH243164:GJNF-177-MONOMER
Uniprot:Q3ZA24
Length = 226
Score = 122 (48.0 bits), Expect = 9.4e-06, P = 9.4e-06
Identities = 30/108 (27%), Positives = 61/108 (56%)
Query: 5 VTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVGLEMDLPVIMMCAHGSKE 64
+T C A++ + ++K D+V+ D+ +PDM+G K+L+ + P+I++ A +E
Sbjct: 29 ITVCRTGYEAVESVNSDKA--DLVLLDLGLPDMNGLKVLDEIHPITGAPIIVVTACEDEE 86
Query: 65 VVMKGVTHDACDYLTKPVR-IEELKNIWQHVVRKRKNERKDLEQSGSV 111
V+K + A +Y+TKP R +E L + + + K ++ + +SG +
Sbjct: 87 NVLKALEQGADEYITKPFRHLEFLARV-KKALSKNISQNTAIIKSGDI 133
>UNIPROTKB|Q9KKK8 [details] [associations]
symbol:VC_A1096 "Chemotaxis protein CheY" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0004871 "signal
transducer activity" evidence=ISS] [GO:0006935 "chemotaxis"
evidence=ISS] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 GO:GO:0006355 GO:GO:0035556 GO:GO:0005622
GO:GO:0006935 GO:GO:0004871 EMBL:AE003853 GenomeReviews:AE003853_GR
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 OMA:MEEELHV
KO:K03413 HSSP:P06143 PIR:D82380 RefSeq:NP_233476.1
ProteinModelPortal:Q9KKK8 DNASU:2612407 GeneID:2612407
KEGG:vch:VCA1096 PATRIC:20086710 ProtClustDB:CLSK789264
Uniprot:Q9KKK8
Length = 125
Score = 106 (42.4 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 25/82 (30%), Positives = 42/82 (51%)
Query: 17 MLRTNKNGYDIVISDVHMPDMDGFKLLELVGLEMDL---PVIMMCAHGSKEVVMKGVTHD 73
+ + K +D++ISDV+MP M GF+ ++ V ++ P++M+ S E +G
Sbjct: 44 LAKAQKARFDVIISDVNMPVMTGFEFVKAVRMQSQYKFTPILMLTTETSPEKKQEGKAVG 103
Query: 74 ACDYLTKPVRIEELKNIWQHVV 95
A +L KP E L Q V+
Sbjct: 104 ATGWLVKPFNPETLLKTLQRVL 125
>TIGR_CMR|CHY_1018 [details] [associations]
symbol:CHY_1018 "chemotaxis response regulator"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 EMBL:CP000141 GenomeReviews:CP000141_GR
GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
eggNOG:COG0784 HOGENOM:HOG000034820 KO:K03413 OMA:PFQAPKV
RefSeq:YP_359865.1 ProteinModelPortal:Q3ADB9 SMR:Q3ADB9
STRING:Q3ADB9 GeneID:3728492 KEGG:chy:CHY_1018 PATRIC:21275169
BioCyc:CHYD246194:GJCN-1017-MONOMER Uniprot:Q3ADB9
Length = 121
Score = 106 (42.4 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 24/90 (26%), Positives = 52/90 (57%)
Query: 9 NRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLL-ELVGLEMDLPVIMMCAHGSKEVVM 67
N A+ A++M + K D+V D+ MP+MDG + + E+ ++ + +IM A G + +VM
Sbjct: 35 NGAQ-AVEMYKELKP--DVVTMDITMPEMDGIQAVREIKKIDPNAKIIMCSAMGQQALVM 91
Query: 68 KGVTHDACDYLTKPVRIEELKNIWQHVVRK 97
+ + A D++ KP + + + ++ +++
Sbjct: 92 EAIQAGAIDFIVKPFQQDRILQAFEKTLKR 121
>TIGR_CMR|VC_A1096 [details] [associations]
symbol:VC_A1096 "chemotaxis protein CheY" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 GO:GO:0006935
GO:GO:0004871 EMBL:AE003853 GenomeReviews:AE003853_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 OMA:MEEELHV KO:K03413
HSSP:P06143 PIR:D82380 RefSeq:NP_233476.1 ProteinModelPortal:Q9KKK8
DNASU:2612407 GeneID:2612407 KEGG:vch:VCA1096 PATRIC:20086710
ProtClustDB:CLSK789264 Uniprot:Q9KKK8
Length = 125
Score = 106 (42.4 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 25/82 (30%), Positives = 42/82 (51%)
Query: 17 MLRTNKNGYDIVISDVHMPDMDGFKLLELVGLEMDL---PVIMMCAHGSKEVVMKGVTHD 73
+ + K +D++ISDV+MP M GF+ ++ V ++ P++M+ S E +G
Sbjct: 44 LAKAQKARFDVIISDVNMPVMTGFEFVKAVRMQSQYKFTPILMLTTETSPEKKQEGKAVG 103
Query: 74 ACDYLTKPVRIEELKNIWQHVV 95
A +L KP E L Q V+
Sbjct: 104 ATGWLVKPFNPETLLKTLQRVL 125
>TIGR_CMR|CPS_4272 [details] [associations]
symbol:CPS_4272 "sigma-54 dependent response regulator"
species:167879 "Colwellia psychrerythraea 34H" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR001789 InterPro:IPR002078 InterPro:IPR003593
InterPro:IPR009057 Pfam:PF00072 Pfam:PF00158 PROSITE:PS50045
PROSITE:PS50110 SMART:SM00382 SMART:SM00448 GO:GO:0005524
GO:GO:0006355 GO:GO:0035556 GO:GO:0003677 GO:GO:0006351
GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG2204
HOGENOM:HOG000058489 InterPro:IPR025944 PROSITE:PS00688 KO:K07715
RefSeq:YP_270922.1 ProteinModelPortal:Q47WA0 STRING:Q47WA0
GeneID:3519601 KEGG:cps:CPS_4272 PATRIC:21471409 OMA:DASVFIQ
BioCyc:CPSY167879:GI48-4282-MONOMER Uniprot:Q47WA0
Length = 457
Score = 127 (49.8 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 33/112 (29%), Positives = 57/112 (50%)
Query: 2 GFSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVGLEM-DLPVIMMCAH 60
G+ V A+IAL L+ +VISD+ M MDG L E + ++ ++PV++M AH
Sbjct: 36 GYDVESAANAKIALGRLQNFIP--QVVISDLRMEGMDGMALFEQIRIQHPNIPVVIMTAH 93
Query: 61 GSKEVVMKGVTHDACDYLTKPVRIEELKNIWQHVVRKRKNERKDLEQSGSVE 112
G+ + +LTKP +EL + + +R + ++ E++G E
Sbjct: 94 GTIPDAINATKQGVFSFLTKPFESQELLDTVEQAIRLQPSQN---EKTGETE 142
>UNIPROTKB|Q9KN24 [details] [associations]
symbol:VC_A0142 "C4-dicarboxylate transport transcriptional
regulatory protein" species:243277 "Vibrio cholerae O1 biovar El
Tor str. N16961" [GO:0000156 "phosphorelay response regulator
activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] [GO:0015740 "C4-dicarboxylate
transport" evidence=ISS] [GO:0035556 "intracellular signal
transduction" evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PROSITE:PS50045
PROSITE:PS50110 SMART:SM00382 SMART:SM00448 GO:GO:0005524
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 GO:GO:0005622
Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:AE003853
GenomeReviews:AE003853_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 InterPro:IPR025943
InterPro:IPR025944 PROSITE:PS00676 PROSITE:PS00688 GO:GO:0015740
HSSP:P13632 PIR:H82495 RefSeq:NP_232542.1 ProteinModelPortal:Q9KN24
DNASU:2612915 GeneID:2612915 KEGG:vch:VCA0142 PATRIC:20084859
OMA:FARKGRI ProtClustDB:CLSK869530 Uniprot:Q9KN24
Length = 450
Score = 126 (49.4 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 31/100 (31%), Positives = 51/100 (51%)
Query: 2 GFSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLL-ELVGLEMDLPVIMMCAH 60
GF V A+ A + + + V+SDV +PD DG LL L ++ +PVI++ H
Sbjct: 27 GFDVAMF--ADGASALAAIEQQSFAAVVSDVRLPDTDGLSLLVALKNVQSLMPVILITGH 84
Query: 61 GSKEVVMKGVTHDACDYLTKPVRIEELKNIWQHVVRKRKN 100
G ++ +K + A D++ KP + E L N V + +N
Sbjct: 85 GDVDMAVKALHQGAFDFIEKPFQPERLANTVAQAVSQYQN 124
Score = 37 (18.1 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 22/80 (27%), Positives = 33/80 (41%)
Query: 125 DDSYSVNEGTSNSRKDEEEEAEKRLKKPRLVWSVELHQQFVSAVKELGFDKAGPKKILEL 184
DDS SV E ++ EEEA L P ++++H + + G I E+
Sbjct: 368 DDSISVGEILASCPGMTEEEASAGL--PL---AIQVHNFERKVIAQALHRHQG--NISEV 420
Query: 185 MNIPGLTRENVASHLQKHRL 204
M L R + +QK L
Sbjct: 421 MKELDLPRRTLNQKMQKFGL 440
>TIGR_CMR|VC_A0142 [details] [associations]
symbol:VC_A0142 "C4-dicarboxylate transport
transcriptional regulatory protein" species:686 "Vibrio cholerae O1
biovar El Tor" [GO:0000156 "phosphorelay response regulator
activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] [GO:0015740 "C4-dicarboxylate
transport" evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PROSITE:PS50045
PROSITE:PS50110 SMART:SM00382 SMART:SM00448 GO:GO:0005524
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 GO:GO:0005622
Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:AE003853
GenomeReviews:AE003853_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 InterPro:IPR025943
InterPro:IPR025944 PROSITE:PS00676 PROSITE:PS00688 GO:GO:0015740
HSSP:P13632 PIR:H82495 RefSeq:NP_232542.1 ProteinModelPortal:Q9KN24
DNASU:2612915 GeneID:2612915 KEGG:vch:VCA0142 PATRIC:20084859
OMA:FARKGRI ProtClustDB:CLSK869530 Uniprot:Q9KN24
Length = 450
Score = 126 (49.4 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 31/100 (31%), Positives = 51/100 (51%)
Query: 2 GFSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLL-ELVGLEMDLPVIMMCAH 60
GF V A+ A + + + V+SDV +PD DG LL L ++ +PVI++ H
Sbjct: 27 GFDVAMF--ADGASALAAIEQQSFAAVVSDVRLPDTDGLSLLVALKNVQSLMPVILITGH 84
Query: 61 GSKEVVMKGVTHDACDYLTKPVRIEELKNIWQHVVRKRKN 100
G ++ +K + A D++ KP + E L N V + +N
Sbjct: 85 GDVDMAVKALHQGAFDFIEKPFQPERLANTVAQAVSQYQN 124
Score = 37 (18.1 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 22/80 (27%), Positives = 33/80 (41%)
Query: 125 DDSYSVNEGTSNSRKDEEEEAEKRLKKPRLVWSVELHQQFVSAVKELGFDKAGPKKILEL 184
DDS SV E ++ EEEA L P ++++H + + G I E+
Sbjct: 368 DDSISVGEILASCPGMTEEEASAGL--PL---AIQVHNFERKVIAQALHRHQG--NISEV 420
Query: 185 MNIPGLTRENVASHLQKHRL 204
M L R + +QK L
Sbjct: 421 MKELDLPRRTLNQKMQKFGL 440
>TIGR_CMR|CPS_0397 [details] [associations]
symbol:CPS_0397 "nitrogen regulation protein NR(I)"
species:167879 "Colwellia psychrerythraea 34H" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0006808 "regulation of
nitrogen utilization" evidence=ISS] InterPro:IPR001789
InterPro:IPR002078 InterPro:IPR002197 InterPro:IPR003593
InterPro:IPR009057 InterPro:IPR010114 Pfam:PF00072 Pfam:PF00158
Pfam:PF02954 PRINTS:PR01590 PROSITE:PS50045 PROSITE:PS50110
SMART:SM00382 SMART:SM00448 GO:GO:0005524 GO:GO:0035556
GO:GO:0009399 GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG2204
HOGENOM:HOG000058489 InterPro:IPR025662 InterPro:IPR025943
InterPro:IPR025944 PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688
KO:K07712 GO:GO:0050906 TIGRFAMs:TIGR01818 RefSeq:YP_267155.1
ProteinModelPortal:Q489V9 SMR:Q489V9 STRING:Q489V9 GeneID:3520592
KEGG:cps:CPS_0397 PATRIC:21464159 OMA:KELAVEP
BioCyc:CPSY167879:GI48-492-MONOMER Uniprot:Q489V9
Length = 466
Score = 127 (49.8 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 32/103 (31%), Positives = 56/103 (54%)
Query: 8 CNRAEIALDMLRTNKNGY-DIVISDVHMPDMDGFKLLELVGLEMD-LPVIMMCAHGSKEV 65
C E A ++L ++G +I+ISD+ MP++DG +LL+ + + +PVI+M AH +
Sbjct: 30 CAAFESAENLLIALEHGQPEIIISDIRMPNIDGMELLKRLNKQHSHIPVIIMTAHSDLDS 89
Query: 66 VMKGVTHDACDYLTKPVRIEELKNIWQHVV-RKRKNERKDLEQ 107
+ A +YL KP I+E N+ + + R+ K+ Q
Sbjct: 90 AVNAYQGGAFEYLPKPFDIDEAINLSKRALTHAREQNEKNKNQ 132
>UNIPROTKB|Q746Z1 [details] [associations]
symbol:GSU3376 "Response receiver-modulated diguanylate
cyclase" species:243231 "Geobacter sulfurreducens PCA" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001054 InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 Pfam:PF00990 GO:GO:0006355
GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR
SUPFAM:SSF55073 GO:GO:0016849 GO:GO:0009190 InterPro:IPR000160
SMART:SM00267 TIGRFAMs:TIGR00254 PROSITE:PS50887 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 RefSeq:NP_954416.1 HSSP:P06143
ProteinModelPortal:Q746Z1 GeneID:2686891 KEGG:gsu:GSU3376
PATRIC:22029607 HOGENOM:HOG000167205 OMA:LTHLHNR
ProtClustDB:CLSK829255 BioCyc:GSUL243231:GH27-3335-MONOMER
Uniprot:Q746Z1
Length = 308
Score = 124 (48.7 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 30/92 (32%), Positives = 50/92 (54%)
Query: 23 NGYDIVISDVHMPDMDGFKLLELV---GLEMDLPVIMMCAHGSKEVVMKGVTHDACDYLT 79
N D+V+ D+ MP MDGF+ L + G DLP+I++ + ++ ++G+ A DY+T
Sbjct: 47 NKVDLVLCDLEMPRMDGFRFLSMTRSRGELQDLPIILLTSREDRDTKIRGLEQGASDYVT 106
Query: 80 KPVRIEELKNIWQHVVRKRKNERKDLEQSGSV 111
KP EL V K K + +L++S +
Sbjct: 107 KPFDSGELV-ARVRVQMKVKGLQDELKRSNEL 137
>TIGR_CMR|GSU_3376 [details] [associations]
symbol:GSU_3376 "GGDEF/response regulator receiver domain
protein" species:243231 "Geobacter sulfurreducens PCA" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001054 InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 Pfam:PF00990 GO:GO:0006355
GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR
SUPFAM:SSF55073 GO:GO:0016849 GO:GO:0009190 InterPro:IPR000160
SMART:SM00267 TIGRFAMs:TIGR00254 PROSITE:PS50887 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 RefSeq:NP_954416.1 HSSP:P06143
ProteinModelPortal:Q746Z1 GeneID:2686891 KEGG:gsu:GSU3376
PATRIC:22029607 HOGENOM:HOG000167205 OMA:LTHLHNR
ProtClustDB:CLSK829255 BioCyc:GSUL243231:GH27-3335-MONOMER
Uniprot:Q746Z1
Length = 308
Score = 124 (48.7 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 30/92 (32%), Positives = 50/92 (54%)
Query: 23 NGYDIVISDVHMPDMDGFKLLELV---GLEMDLPVIMMCAHGSKEVVMKGVTHDACDYLT 79
N D+V+ D+ MP MDGF+ L + G DLP+I++ + ++ ++G+ A DY+T
Sbjct: 47 NKVDLVLCDLEMPRMDGFRFLSMTRSRGELQDLPIILLTSREDRDTKIRGLEQGASDYVT 106
Query: 80 KPVRIEELKNIWQHVVRKRKNERKDLEQSGSV 111
KP EL V K K + +L++S +
Sbjct: 107 KPFDSGELV-ARVRVQMKVKGLQDELKRSNEL 137
>TIGR_CMR|CBU_1227 [details] [associations]
symbol:CBU_1227 "DNA-binding response regulator"
species:227377 "Coxiella burnetii RSA 493" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0006355 GO:GO:0035556 GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 EMBL:AE016828
GenomeReviews:AE016828_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034815 KO:K02483 RefSeq:NP_820222.2
ProteinModelPortal:Q83CA1 PRIDE:Q83CA1 GeneID:1209132
KEGG:cbu:CBU_1227 PATRIC:17931191 OMA:THETFDI
ProtClustDB:CLSK914625 BioCyc:CBUR227377:GJ7S-1215-MONOMER
Uniprot:Q83CA1
Length = 232
Score = 121 (47.7 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 29/111 (26%), Positives = 57/111 (51%)
Query: 2 GFSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVGLEMD-LPVIMMCAH 60
G ++ + A D+L + +DI+I D+ +P G +L+ + + D PV+++ A
Sbjct: 33 GHTIDWVRDGQAAHDVLSSTHETFDIIILDLGLPKRSGLDVLKTIREKNDPTPVVILTAR 92
Query: 61 GSKEVVMKGVTHDACDYLTKPVRIEELKNIWQHVVRKRKNERKDLEQSGSV 111
+ + +KG+ + DY+TKP +EEL + + R+ K K + G +
Sbjct: 93 DTVDDRIKGLDAGSDDYMTKPFDLEELCARMRAMQRRSKERAKPIISHGDI 143
>UNIPROTKB|Q74AX6 [details] [associations]
symbol:cheY40H-1 "Response receiver CheY associated with
MCPs of class 40H" species:243231 "Geobacter sulfurreducens PCA"
[GO:0004871 "signal transducer activity" evidence=ISS] [GO:0006935
"chemotaxis" evidence=ISS] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
GO:GO:0005622 GO:GO:0006935 GO:GO:0004871 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413 HSSP:P06143
RefSeq:NP_953272.2 ProteinModelPortal:Q74AX6 GeneID:2685646
KEGG:gsu:GSU2223 PATRIC:22027301 OMA:GANEYLV ProtClustDB:CLSK828765
BioCyc:GSUL243231:GH27-2170-MONOMER Uniprot:Q74AX6
Length = 121
Score = 105 (42.0 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 27/92 (29%), Positives = 52/92 (56%)
Query: 2 GFSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVGLEMD---LPVIMMC 58
GF V + + AL +L + D++I+D++MPD++G +L+ V + +P+ ++
Sbjct: 26 GFEVVEASSGFEALRLLPRER--LDLIITDINMPDINGLELVSFVRTSDNYRHIPLFIIS 83
Query: 59 AHGSKEVVMKGVTHDACDYLTKP---VRIEEL 87
GS+ KG++ A +YL KP R+++L
Sbjct: 84 TEGSERDREKGLSLGANEYLVKPFDPARLQDL 115
>UNIPROTKB|Q9KQD5 [details] [associations]
symbol:VC_2065 "Chemotaxis protein CheY" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0004871 "signal
transducer activity" evidence=ISS] [GO:0006935 "chemotaxis"
evidence=ISS] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 GO:GO:0006355 GO:GO:0035556 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0005622 GO:GO:0006935 GO:GO:0004871
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 KO:K03413
OMA:GHYDFLV HSSP:P06143 PIR:C82123 RefSeq:NP_231697.1
ProteinModelPortal:Q9KQD5 SMR:Q9KQD5 DNASU:2613445 GeneID:2613445
KEGG:vch:VC2065 PATRIC:20083164 ProtClustDB:CLSK874661
Uniprot:Q9KQD5
Length = 130
Score = 105 (42.0 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 28/92 (30%), Positives = 48/92 (52%)
Query: 1 MGFSVTK-CNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVGLEMDL---PVIM 56
+GF+ T+ + AL ML+ K +D V++D +MP M G LL+ + + +L PV+M
Sbjct: 31 LGFNNTQEADDGLTALPMLK--KGDFDFVVTDWNMPGMQGIDLLKNIRADEELKHLPVLM 88
Query: 57 MCAHGSKEVVMKGVTHDACDYLTKPVRIEELK 88
+ A +E +++ Y+ KP LK
Sbjct: 89 ITAEAKREQIIEAAQAGVNGYIVKPFTAATLK 120
>TIGR_CMR|CJE_1261 [details] [associations]
symbol:CJE_1261 "chemotaxis protein CheY" species:195099
"Campylobacter jejuni RM1221" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 EMBL:CP000025
GenomeReviews:CP000025_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0784 HOGENOM:HOG000034820 KO:K03413
OMA:DVLITDW ProtClustDB:CLSK872349 RefSeq:YP_179249.1
ProteinModelPortal:Q5HTY6 STRING:Q5HTY6 GeneID:3231768
KEGG:cjr:CJE1261 PATRIC:20044318
BioCyc:CJEJ195099:GJC0-1287-MONOMER Uniprot:Q5HTY6
Length = 130
Score = 105 (42.0 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 26/85 (30%), Positives = 48/85 (56%)
Query: 14 ALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVGLEM---DLPVIMMCAHGSKEVVMKGV 70
A D+L N++ ++I+D +MP+M+G +L++ V E D+P+IM+ G K V+ +
Sbjct: 37 AWDLLTKNED-VKVLITDWNMPEMNGLELVKKVRAEKKYEDMPIIMVTTEGGKAEVITAL 95
Query: 71 THDACDYLTKPVRIEELKNIWQHVV 95
+Y+ KP + LK + V+
Sbjct: 96 KAGVNNYIVKPFTPQVLKEKLEDVL 120
>TIGR_CMR|GSU_2223 [details] [associations]
symbol:GSU_2223 "chemotaxis protein CheY" species:243231
"Geobacter sulfurreducens PCA" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 GO:GO:0006935
GO:GO:0004871 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413
HSSP:P06143 RefSeq:NP_953272.2 ProteinModelPortal:Q74AX6
GeneID:2685646 KEGG:gsu:GSU2223 PATRIC:22027301 OMA:GANEYLV
ProtClustDB:CLSK828765 BioCyc:GSUL243231:GH27-2170-MONOMER
Uniprot:Q74AX6
Length = 121
Score = 105 (42.0 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 27/92 (29%), Positives = 52/92 (56%)
Query: 2 GFSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVGLEMD---LPVIMMC 58
GF V + + AL +L + D++I+D++MPD++G +L+ V + +P+ ++
Sbjct: 26 GFEVVEASSGFEALRLLPRER--LDLIITDINMPDINGLELVSFVRTSDNYRHIPLFIIS 83
Query: 59 AHGSKEVVMKGVTHDACDYLTKP---VRIEEL 87
GS+ KG++ A +YL KP R+++L
Sbjct: 84 TEGSERDREKGLSLGANEYLVKPFDPARLQDL 115
>TIGR_CMR|VC_2065 [details] [associations]
symbol:VC_2065 "chemotaxis protein CheY" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0005622 GO:GO:0006935 GO:GO:0004871 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 KO:K03413 OMA:GHYDFLV
HSSP:P06143 PIR:C82123 RefSeq:NP_231697.1 ProteinModelPortal:Q9KQD5
SMR:Q9KQD5 DNASU:2613445 GeneID:2613445 KEGG:vch:VC2065
PATRIC:20083164 ProtClustDB:CLSK874661 Uniprot:Q9KQD5
Length = 130
Score = 105 (42.0 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 28/92 (30%), Positives = 48/92 (52%)
Query: 1 MGFSVTK-CNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVGLEMDL---PVIM 56
+GF+ T+ + AL ML+ K +D V++D +MP M G LL+ + + +L PV+M
Sbjct: 31 LGFNNTQEADDGLTALPMLK--KGDFDFVVTDWNMPGMQGIDLLKNIRADEELKHLPVLM 88
Query: 57 MCAHGSKEVVMKGVTHDACDYLTKPVRIEELK 88
+ A +E +++ Y+ KP LK
Sbjct: 89 ITAEAKREQIIEAAQAGVNGYIVKPFTAATLK 120
>TAIR|locus:2080590 [details] [associations]
symbol:ARR9 "response regulator 9" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA;IPI] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0009736 "cytokinin mediated signaling pathway"
evidence=RCA;IMP;TAS] [GO:0007623 "circadian rhythm"
evidence=RCA;IMP] [GO:0009735 "response to cytokinin stimulus"
evidence=IEP] [GO:0009740 "gibberellic acid mediated signaling
pathway" evidence=RCA] [GO:0010162 "seed dormancy process"
evidence=RCA] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 GO:GO:0005634 GO:GO:0009536 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0006355 GO:GO:0007623 GO:GO:0006351
GO:GO:0009736 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
HOGENOM:HOG000034820 KO:K14492 eggNOG:COG3706
ProtClustDB:CLSN2683767 EMBL:AB010918 EMBL:AL138655 EMBL:AY090234
EMBL:AY133571 IPI:IPI00543561 PIR:T47764 RefSeq:NP_191263.1
UniGene:At.245 ProteinModelPortal:O80366 SMR:O80366 IntAct:O80366
STRING:O80366 EnsemblPlants:AT3G57040.1 GeneID:824871
KEGG:ath:AT3G57040 GeneFarm:4126 TAIR:At3g57040 InParanoid:O80366
OMA:GISTDRA PhylomeDB:O80366 Genevestigator:O80366
GermOnline:AT3G57040 Uniprot:O80366
Length = 234
Score = 121 (47.7 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 30/110 (27%), Positives = 59/110 (53%)
Query: 26 DIVISDVHMPDMDGFKLLELV---GLEMDLPVIMMCAHGSKEVVMKGVTHDACDYLTKPV 82
+++I+D MP M G+ LL+ V D+PV++M + + + + A ++ KPV
Sbjct: 75 NLIITDYCMPGMTGYDLLKKVKESSAFRDIPVVIMSSENVPARISRCLEEGAEEFFLKPV 134
Query: 83 RIEELKNIWQHVVR-KRKNER-KDLEQSGSVEGGAQQPKPFEESDDSYSV 130
R+ +L + H+++ K KN++ +++E + VE G E DS ++
Sbjct: 135 RLADLNKLKPHMMKTKLKNQKLEEIETTSKVENGVPTAVADPEIKDSTNI 184
>TAIR|locus:2194584 [details] [associations]
symbol:ARR4 "response regulator 4" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS;TAS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0010017
"red or far-red light signaling pathway" evidence=IMP] [GO:0009736
"cytokinin mediated signaling pathway" evidence=RCA;IMP;TAS]
[GO:0010114 "response to red light" evidence=IMP] [GO:0009793
"embryo development ending in seed dormancy" evidence=IMP]
[GO:0007623 "circadian rhythm" evidence=RCA;IMP] [GO:0042752
"regulation of circadian rhythm" evidence=IGI] [GO:0009735
"response to cytokinin stimulus" evidence=IEP] [GO:0004674 "protein
serine/threonine kinase activity" evidence=IDA] [GO:0046777
"protein autophosphorylation" evidence=IDA] [GO:0006612 "protein
targeting to membrane" evidence=RCA] [GO:0009963 "positive
regulation of flavonoid biosynthetic process" evidence=RCA]
[GO:0010363 "regulation of plant-type hypersensitive response"
evidence=RCA] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634
GO:GO:0005737 GO:GO:0006355 GO:GO:0007623 GO:GO:0004674
GO:GO:0046777 GO:GO:0006351 GO:GO:0042752 GO:GO:0010114
GO:GO:0009793 GO:GO:0009736 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0784 EMBL:AC007067 GO:GO:0010017
HOGENOM:HOG000034820 KO:K14492 ProtClustDB:CLSN2912722
EMBL:AB008487 EMBL:AB010915 EMBL:AF057282 IPI:IPI00523637
PIR:T48851 RefSeq:NP_172517.1 UniGene:At.22981 UniGene:At.67259
ProteinModelPortal:O82798 SMR:O82798 IntAct:O82798 STRING:O82798
EnsemblPlants:AT1G10470.1 GeneID:837587 KEGG:ath:AT1G10470
GeneFarm:4121 TAIR:At1g10470 InParanoid:O82798 OMA:KRIRDYM
PhylomeDB:O82798 Genevestigator:O82798 GermOnline:AT1G10470
Uniprot:O82798
Length = 259
Score = 122 (48.0 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 35/123 (28%), Positives = 63/123 (51%)
Query: 26 DIVISDVHMPDMDGFKLLELVGLEM---DLPVIMMCAHGSKEVVMKGVTHDACDYLTKPV 82
D++I+D MP M G++LL+ + ++PV++M + + + + A D+L KPV
Sbjct: 90 DLIITDYCMPGMTGYELLKKIKESSNFREVPVVIMSSENVLTRIDRCLEEGAQDFLLKPV 149
Query: 83 RIEELKNIWQHVVRKRK----NERKDLEQSGSVEGGAQQPKP----FEESDDSYSVNEGT 134
++ ++K + H+ + K N+RK E S SV P P ES +V+ +
Sbjct: 150 KLADVKRLRSHLTKDVKLSNGNKRKLPEDSSSVNSSLPPPSPPLTISPESSPPLTVSTES 209
Query: 135 SNS 137
S+S
Sbjct: 210 SDS 212
>TIGR_CMR|CPS_2524 [details] [associations]
symbol:CPS_2524 "DNA-binding response regulator"
species:167879 "Colwellia psychrerythraea 34H" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0006355 GO:GO:0035556 GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0745 HOGENOM:HOG000034815
RefSeq:YP_269240.1 ProteinModelPortal:Q481M9 STRING:Q481M9
GeneID:3520591 KEGG:cps:CPS_2524 PATRIC:21468113 OMA:NIANYME
ProtClustDB:CLSK938208 BioCyc:CPSY167879:GI48-2587-MONOMER
Uniprot:Q481M9
Length = 240
Score = 121 (47.7 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 27/68 (39%), Positives = 43/68 (63%)
Query: 23 NGYDIVISDVHMPDMDGFKLLELVGLEM--DLPVIMMCAHGSKEVVMKGVTHDACDYLTK 80
N YD+VI D+++P MDG ++ + + + +P+IM+ A S + + G T A DYLTK
Sbjct: 48 NHYDLVILDLNLPVMDGLEVCKKLRKQARHHVPIIMLTARDSIDDKISGFTLGADDYLTK 107
Query: 81 PVRIEELK 88
P +EEL+
Sbjct: 108 PFSLEELE 115
>UNIPROTKB|Q4GZK3 [details] [associations]
symbol:rr8 "Type A response regulator 8" species:39946
"Oryza sativa Indica Group" [GO:0009735 "response to cytokinin
stimulus" evidence=IC] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0009735 GO:GO:0006355
GO:GO:0035556 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 EMBL:AJ938077 ProteinModelPortal:Q4GZK3
STRING:Q4GZK3 KEGG:dosa:Os08t0376700-01 KEGG:dosa:Os08t0377200-01
Gramene:Q4GZK3 Uniprot:Q4GZK3
Length = 121
Score = 104 (41.7 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 25/81 (30%), Positives = 44/81 (54%)
Query: 17 MLRTNKNGYDIVISDVHMPDMDGFKLLELVGLE---MDLPVIMMCAHGSKEVVMKGVTHD 73
M +++ D+++SD MPDM G+ LL V LPV++ + E + K +
Sbjct: 41 MFLDSEHDVDMIVSDYCMPDMTGYNLLMEVKKSPKLAHLPVVIASSDNIPERIRKCLDGG 100
Query: 74 ACDYLTKPVRIEELKNIWQHV 94
A DY+ KPV+I ++ I +++
Sbjct: 101 AKDYILKPVKIVDVPRIMKYI 121
>TIGR_CMR|BA_5581 [details] [associations]
symbol:BA_5581 "stage 0 sporulation protein F"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0030436 "asexual sporulation" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0016740 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K02490
ProtClustDB:CLSK873695 RefSeq:NP_847737.1 RefSeq:YP_022251.1
RefSeq:YP_031424.1 HSSP:P06628 ProteinModelPortal:Q81JW3 SMR:Q81JW3
DNASU:1085276 EnsemblBacteria:EBBACT00000010293
EnsemblBacteria:EBBACT00000016210 EnsemblBacteria:EBBACT00000023627
GeneID:1085276 GeneID:2814845 GeneID:2853145 KEGG:ban:BA_5581
KEGG:bar:GBAA_5581 KEGG:bat:BAS5185 OMA:EADGAMD
BioCyc:BANT260799:GJAJ-5260-MONOMER
BioCyc:BANT261594:GJ7F-5440-MONOMER Uniprot:Q81JW3
Length = 122
Score = 104 (41.7 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 23/76 (30%), Positives = 47/76 (61%)
Query: 14 ALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVG-LEMDLPVIMMCAHGSKEVVMKGVTH 72
ALD+++ K+ D+V+ D+ +P MDG ++L+ V ++ + VI+M A+G +++ +
Sbjct: 38 ALDIVK--KDNPDLVVLDMKIPGMDGIEILKHVKEIDESIKVILMTAYGELDMIQEAKDL 95
Query: 73 DACDYLTKPVRIEELK 88
A + KP I+E++
Sbjct: 96 GALMHFAKPFDIDEIR 111
>TIGR_CMR|SO_3209 [details] [associations]
symbol:SO_3209 "chemotaxis protein CheY" species:211586
"Shewanella oneidensis MR-1" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413 OMA:GHYDFLV
HSSP:P06143 RefSeq:NP_718764.1 ProteinModelPortal:Q8ECD4 SMR:Q8ECD4
GeneID:1170902 KEGG:son:SO_3209 PATRIC:23526102
ProtClustDB:CLSK907053 Uniprot:Q8ECD4
Length = 127
Score = 104 (41.7 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 28/92 (30%), Positives = 46/92 (50%)
Query: 1 MGFSVTK-CNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVGLE---MDLPVIM 56
+GF+ T+ + AL ML+ K +D V++D +MP M G LL+ + + LPV+M
Sbjct: 27 LGFNNTQEADDGSTALPMLQ--KGDFDFVVTDWNMPGMQGIDLLKAIRADDSLKHLPVLM 84
Query: 57 MCAHGSKEVVMKGVTHDACDYLTKPVRIEELK 88
+ A +E ++ Y+ KP LK
Sbjct: 85 VTAEAKREQIIAAAQAGVNGYVVKPFTAATLK 116
>UNIPROTKB|Q9KLN9 [details] [associations]
symbol:VC_A0704 "Phosphoglycerate transport system
transcriptional regulatory protein PgtA" species:243277 "Vibrio
cholerae O1 biovar El Tor str. N16961" [GO:0000156 "phosphorelay
response regulator activity" evidence=ISS] [GO:0000160
"phosphorelay signal transduction system" evidence=ISS] [GO:0035556
"intracellular signal transduction" evidence=ISS]
InterPro:IPR001789 InterPro:IPR002078 InterPro:IPR002197
InterPro:IPR009057 Pfam:PF00072 Pfam:PF00158 Pfam:PF02954
PROSITE:PS50045 PROSITE:PS50110 SMART:SM00448 GO:GO:0005524
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 GO:GO:0005622
Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:AE003853
GenomeReviews:AE003853_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 InterPro:IPR025944 PROSITE:PS00688 HSSP:P10958
PIR:E82426 RefSeq:NP_233091.1 ProteinModelPortal:Q9KLN9
DNASU:2612077 GeneID:2612077 KEGG:vch:VCA0704 PATRIC:20085954
KO:K08476 OMA:DIYMPAM ProtClustDB:CLSK869733 Uniprot:Q9KLN9
Length = 439
Score = 125 (49.1 bits), Expect = 1.8e-05, Sum P(2) = 1.8e-05
Identities = 31/101 (30%), Positives = 58/101 (57%)
Query: 14 ALDMLRTNKNGYDIVISDVHMPDMDGFKLLELV-GLEMDLPVIMMCAHGSKEVVMKGVTH 72
A+ ++ + NG +V+ D++MP + G +LL+ + ++ +PVI++ HG + ++ V
Sbjct: 57 AMSHIQPDWNG--VVLLDMYMPQLHGMELLKQIKAVDDKIPVIVITGHGDIPMAVEAVKM 114
Query: 73 DACDYLTKPVRIEELKN-IWQHVVRKRKNERKDLEQSGSVE 112
ACD+L KP+ +L I QH+ +R + L S SV+
Sbjct: 115 GACDFLEKPINPPQLLTLIKQHLELRRSFIEQKLLLSRSVK 155
Score = 36 (17.7 bits), Expect = 1.8e-05, Sum P(2) = 1.8e-05
Identities = 9/28 (32%), Positives = 12/28 (42%)
Query: 178 PKKILELMNIPGLTRENVASHLQKHRLY 205
P + EL N+ L + K RLY
Sbjct: 348 PGNVRELRNVAELYAIGIVKLAGKERLY 375
>TIGR_CMR|VC_A0704 [details] [associations]
symbol:VC_A0704 "phosphoglycerate transport system
transcriptional regulatory protein PgtA" species:686 "Vibrio
cholerae O1 biovar El Tor" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001789
InterPro:IPR002078 InterPro:IPR002197 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PROSITE:PS50045
PROSITE:PS50110 SMART:SM00448 GO:GO:0005524 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 GO:GO:0005622 Gene3D:1.10.10.60
SUPFAM:SSF46689 EMBL:AE003853 GenomeReviews:AE003853_GR
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 InterPro:IPR025944
PROSITE:PS00688 HSSP:P10958 PIR:E82426 RefSeq:NP_233091.1
ProteinModelPortal:Q9KLN9 DNASU:2612077 GeneID:2612077
KEGG:vch:VCA0704 PATRIC:20085954 KO:K08476 OMA:DIYMPAM
ProtClustDB:CLSK869733 Uniprot:Q9KLN9
Length = 439
Score = 125 (49.1 bits), Expect = 1.8e-05, Sum P(2) = 1.8e-05
Identities = 31/101 (30%), Positives = 58/101 (57%)
Query: 14 ALDMLRTNKNGYDIVISDVHMPDMDGFKLLELV-GLEMDLPVIMMCAHGSKEVVMKGVTH 72
A+ ++ + NG +V+ D++MP + G +LL+ + ++ +PVI++ HG + ++ V
Sbjct: 57 AMSHIQPDWNG--VVLLDMYMPQLHGMELLKQIKAVDDKIPVIVITGHGDIPMAVEAVKM 114
Query: 73 DACDYLTKPVRIEELKN-IWQHVVRKRKNERKDLEQSGSVE 112
ACD+L KP+ +L I QH+ +R + L S SV+
Sbjct: 115 GACDFLEKPINPPQLLTLIKQHLELRRSFIEQKLLLSRSVK 155
Score = 36 (17.7 bits), Expect = 1.8e-05, Sum P(2) = 1.8e-05
Identities = 9/28 (32%), Positives = 12/28 (42%)
Query: 178 PKKILELMNIPGLTRENVASHLQKHRLY 205
P + EL N+ L + K RLY
Sbjct: 348 PGNVRELRNVAELYAIGIVKLAGKERLY 375
>TIGR_CMR|CPS_1750 [details] [associations]
symbol:CPS_1750 "transcriptional regulatory protein CpxR"
species:167879 "Colwellia psychrerythraea 34H" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0009636 "response to
toxic substance" evidence=ISS] InterPro:IPR001789
InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622
EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745
HOGENOM:HOG000034819 KO:K07662 RefSeq:YP_268481.1
ProteinModelPortal:Q484N4 STRING:Q484N4 GeneID:3518457
KEGG:cps:CPS_1750 PATRIC:21466667
BioCyc:CPSY167879:GI48-1820-MONOMER Uniprot:Q484N4
Length = 242
Score = 120 (47.3 bits), Expect = 2.1e-05, P = 2.1e-05
Identities = 27/85 (31%), Positives = 47/85 (55%)
Query: 3 FSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVGLEMDLPVIMMCAHGS 62
F VT C + A + + + +D+++ DV MP ++GF++L+ +G P++M+ A G
Sbjct: 33 FKVTSC--LDGASGLAKAFDDSFDLILLDVMMPILNGFEVLKALGGNHKTPILMLTAKGD 90
Query: 63 KEVVMKGVTHDACDYLTKPVRIEEL 87
+ G+ A DYL KP + EL
Sbjct: 91 DNDRILGLELGADDYLAKPFKHREL 115
>TIGR_CMR|DET_0300 [details] [associations]
symbol:DET_0300 "DNA-binding response regulator"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR001789 InterPro:IPR001867 InterPro:IPR016032
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0006355 GO:GO:0035556 GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351 GO:GO:0005622
EMBL:CP000027 GenomeReviews:CP000027_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745
HOGENOM:HOG000034819 SUPFAM:SSF46894 RefSeq:YP_181048.1
ProteinModelPortal:Q3Z9Q1 STRING:Q3Z9Q1 GeneID:3230339
KEGG:det:DET0300 PATRIC:21607673 OMA:GIKYGHW ProtClustDB:CLSK837537
BioCyc:DETH243164:GJNF-300-MONOMER Uniprot:Q3Z9Q1
Length = 225
Score = 111 (44.1 bits), Expect = 2.2e-05, Sum P(2) = 2.2e-05
Identities = 23/84 (27%), Positives = 47/84 (55%)
Query: 22 KNGYDIVISDVHMPDMDGFKLLELVGLEMDLPVIMMCAHGSKEVVMKGVTHDACDYLTKP 81
K+ +DI I D+ +PD+DG +L+ + LP++++ A +++ + A DY+TKP
Sbjct: 44 KDDFDIAIIDLGLPDIDGINVLKQIRAFSSLPILILTARNNEQEIFTAFELGADDYITKP 103
Query: 82 VRIEELKNIWQHVVRKRKNERKDL 105
+ EL + ++++ +DL
Sbjct: 104 FQPLELIARVKSLLKRLNKTSQDL 127
Score = 41 (19.5 bits), Expect = 2.2e-05, Sum P(2) = 2.2e-05
Identities = 7/20 (35%), Positives = 13/20 (65%)
Query: 192 RENVASHLQKHRLYLSRLSG 211
+E + +H+ + R LSR+ G
Sbjct: 189 KETIKTHIMRIRQKLSRIDG 208
>UNIPROTKB|Q52884 [details] [associations]
symbol:cheY2 "CheY2" species:382 "Sinorhizobium meliloti"
[GO:0005515 "protein binding" evidence=IPI] InterPro:IPR001789
Pfam:PF00072 PROSITE:PS50110 SMART:SM00448 GO:GO:0006355
GO:GO:0035556 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034820 EMBL:U13166
GenomeReviews:AL591688_GR PIR:S61838 PDB:1P6Q PDB:1P6U PDBsum:1P6Q
PDBsum:1P6U ProteinModelPortal:Q52884 SMR:Q52884 IntAct:Q52884
PATRIC:23630501 ProtClustDB:CLSK800134 EvolutionaryTrace:Q52884
Uniprot:Q52884
Length = 129
Score = 103 (41.3 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 29/92 (31%), Positives = 46/92 (50%)
Query: 1 MGFS-VTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVGLE---MDLPVIM 56
+GF +T E + ++ +N + +VISD +MP MDG LL+ V I+
Sbjct: 29 LGFKQITAAGDGEQGMKIMA--QNPHHLVISDFNMPKMDGLGLLQAVRANPATKKAAFII 86
Query: 57 MCAHGSKEVVMKGVTHDACDYLTKPVRIEELK 88
+ A G + +V K A + L KP IE++K
Sbjct: 87 LTAQGDRALVQKAAALGANNVLAKPFTIEKMK 118
>TIGR_CMR|BA_0287 [details] [associations]
symbol:BA_0287 "DNA-binding response regulator"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] InterPro:IPR001789
InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034819 HSSP:P08402
RefSeq:NP_842837.1 RefSeq:YP_016897.1 RefSeq:YP_026554.1
ProteinModelPortal:Q81VC5 DNASU:1085878
EnsemblBacteria:EBBACT00000011028 EnsemblBacteria:EBBACT00000016417
EnsemblBacteria:EBBACT00000022481 GeneID:1085878 GeneID:2819460
GeneID:2851280 KEGG:ban:BA_0287 KEGG:bar:GBAA_0287 KEGG:bat:BAS0273
OMA:NYNLVIL ProtClustDB:CLSK917934
BioCyc:BANT260799:GJAJ-313-MONOMER
BioCyc:BANT261594:GJ7F-322-MONOMER Uniprot:Q81VC5
Length = 237
Score = 119 (46.9 bits), Expect = 2.6e-05, P = 2.6e-05
Identities = 26/76 (34%), Positives = 46/76 (60%)
Query: 12 EIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVGLEMDLPVIMMCAHGSKEVVMKGVT 71
E+AL + N+N Y IVI D+ MP +DG ++ + + ++P++M+ A + + G++
Sbjct: 37 EVALQLF--NQNNYSIVILDLMMPKVDGIEVCRKLRDKTNVPILMLTAKDHEVDKILGLS 94
Query: 72 HDACDYLTKPVRIEEL 87
A DY+TKP I E+
Sbjct: 95 IGADDYITKPFSIHEV 110
>TIGR_CMR|CPS_0681 [details] [associations]
symbol:CPS_0681 "DNA-binding response regulator"
species:167879 "Colwellia psychrerythraea 34H" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] InterPro:IPR001789
InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622
EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745
HOGENOM:HOG000034819 RefSeq:YP_267431.1 ProteinModelPortal:Q488T3
STRING:Q488T3 GeneID:3522148 KEGG:cps:CPS_0681 PATRIC:21464685
BioCyc:CPSY167879:GI48-768-MONOMER Uniprot:Q488T3
Length = 246
Score = 119 (46.9 bits), Expect = 2.9e-05, P = 2.9e-05
Identities = 28/85 (32%), Positives = 49/85 (57%)
Query: 2 GFSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVGLE---MDLPVIMMC 58
GF+VT R ++ +D+++ KN DIV+ DV +P ++G ++ L+ +P+IM+
Sbjct: 25 GFNVTHVARGDLVIDVIK--KNTTDIVLLDVMLPGLNGIEVCRLIRQHEQSKQVPIIMLT 82
Query: 59 AHGSKEVVMKGVTHDACDYLTKPVR 83
A + + G+ A DY+ KPVR
Sbjct: 83 ARADEFDEVIGLEAGADDYVIKPVR 107
>TIGR_CMR|BA_0651 [details] [associations]
symbol:BA_0651 "DNA-binding response regulator"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
InterPro:IPR016032 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351 GO:GO:0005622
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
HOGENOM:HOG000034819 SUPFAM:SSF46894 HSSP:P08402 RefSeq:NP_843182.1
RefSeq:YP_017279.1 RefSeq:YP_026895.1 ProteinModelPortal:Q81V49
DNASU:1088070 EnsemblBacteria:EBBACT00000008363
EnsemblBacteria:EBBACT00000015665 EnsemblBacteria:EBBACT00000022532
GeneID:1088070 GeneID:2814886 GeneID:2850289 KEGG:ban:BA_0651
KEGG:bar:GBAA_0651 KEGG:bat:BAS0618 OMA:LWDEAKH
ProtClustDB:CLSK915873 BioCyc:BANT260799:GJAJ-677-MONOMER
BioCyc:BANT261594:GJ7F-704-MONOMER Uniprot:Q81V49
Length = 225
Score = 118 (46.6 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 31/109 (28%), Positives = 58/109 (53%)
Query: 1 MGFSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVGLEMDLPVIMMCAH 60
+G++ E A+ + N+N + ++ D+ MP MDG++ + + ++P+IM+ A
Sbjct: 24 IGYNCICARSGEEAISHIE-NQN-FKFILLDIMMPKMDGWETCKKIRSFSNVPIIMVTAR 81
Query: 61 GSKEVVMKGVTHDACDYLTKPVRIEELKNIWQHVVRKRKNERKDLEQSG 109
V++G+ A DY+TKP EEL + V+R R N+ ++ G
Sbjct: 82 DQTIDVVQGLKLGADDYVTKPFHEEELFARIEAVLR-RTNQHAQIQYHG 129
>UNIPROTKB|Q3ADB1 [details] [associations]
symbol:cheY1 "Chemotaxis protein CheY" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0004871 "signal
transducer activity" evidence=ISS] [GO:0006935 "chemotaxis"
evidence=ISS] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 GO:GO:0006355 GO:GO:0035556 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0005622 GO:GO:0006935 GO:GO:0004871
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784
HOGENOM:HOG000034820 RefSeq:YP_359873.1 ProteinModelPortal:Q3ADB1
STRING:Q3ADB1 GeneID:3728270 KEGG:chy:CHY_1026 PATRIC:21275187
OMA:GATAWIT BioCyc:CHYD246194:GJCN-1025-MONOMER Uniprot:Q3ADB1
Length = 120
Score = 102 (41.0 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 28/98 (28%), Positives = 47/98 (47%)
Query: 2 GFSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVGLEMDL---PVIMMC 58
G V + ALDML K +D++I+D++MP+MDG ++ V + PVI++
Sbjct: 25 GHQVATFTKGSEALDML--GKEKFDLIITDLNMPEMDGITFIQKVRALSNYKFTPVIVLT 82
Query: 59 AHGSKEVVMKGVTHDACDYLTKPVRIEELKNIWQHVVR 96
+ A ++TKP E+L + + V R
Sbjct: 83 TESQAAKKEQARRAGATAWITKPFTPEQLLGVVEKVAR 120
>TIGR_CMR|CHY_1026 [details] [associations]
symbol:CHY_1026 "chemotaxis protein CheY" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0004871 "signal transducer activity" evidence=ISS] [GO:0006935
"chemotaxis" evidence=ISS] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0005622 GO:GO:0006935
GO:GO:0004871 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
eggNOG:COG0784 HOGENOM:HOG000034820 RefSeq:YP_359873.1
ProteinModelPortal:Q3ADB1 STRING:Q3ADB1 GeneID:3728270
KEGG:chy:CHY_1026 PATRIC:21275187 OMA:GATAWIT
BioCyc:CHYD246194:GJCN-1025-MONOMER Uniprot:Q3ADB1
Length = 120
Score = 102 (41.0 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 28/98 (28%), Positives = 47/98 (47%)
Query: 2 GFSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVGLEMDL---PVIMMC 58
G V + ALDML K +D++I+D++MP+MDG ++ V + PVI++
Sbjct: 25 GHQVATFTKGSEALDML--GKEKFDLIITDLNMPEMDGITFIQKVRALSNYKFTPVIVLT 82
Query: 59 AHGSKEVVMKGVTHDACDYLTKPVRIEELKNIWQHVVR 96
+ A ++TKP E+L + + V R
Sbjct: 83 TESQAAKKEQARRAGATAWITKPFTPEQLLGVVEKVAR 120
>UNIPROTKB|P14376 [details] [associations]
symbol:rcsC "RcsC sensory histidine kinase" species:83333
"Escherichia coli K-12" [GO:0018106 "peptidyl-histidine
phosphorylation" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0000156
"phosphorelay response regulator activity" evidence=IEA]
[GO:0023014 "signal transduction by phosphorylation"
evidence=IEA;IDA] [GO:0035556 "intracellular signal transduction"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0046777
"protein autophosphorylation" evidence=IMP] [GO:0044010
"single-species biofilm formation" evidence=IMP] [GO:0071470
"cellular response to osmotic stress" evidence=IMP] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005886 "plasma membrane"
evidence=IEA] [GO:0016021 "integral to membrane" evidence=IEA;RCA]
[GO:0016020 "membrane" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0000160 "phosphorelay signal transduction system"
evidence=IEA;IDA] [GO:0000155 "phosphorelay sensor kinase activity"
evidence=IEA;IDA] InterPro:IPR000014 InterPro:IPR001789
InterPro:IPR003594 InterPro:IPR003661 InterPro:IPR004358
InterPro:IPR009082 InterPro:IPR019017 Pfam:PF00072 Pfam:PF00512
Pfam:PF02518 Pfam:PF09456 PRINTS:PR00344 PROSITE:PS50110
PROSITE:PS50112 PROSITE:PS51426 SMART:SM00091 SMART:SM00387
SMART:SM00388 SMART:SM00448 InterPro:IPR005467 GO:GO:0016021
GO:GO:0005886 GO:GO:0005524 GO:GO:0006355 GO:GO:0035556 EMBL:U00096
EMBL:AP009048 GenomeReviews:U00096_GR GO:GO:0046777 GO:GO:0005622
GO:GO:0071470 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
GO:GO:0000155 Gene3D:1.10.287.130 Gene3D:3.30.565.10
SUPFAM:SSF55874 SUPFAM:SSF47384 PROSITE:PS50109 eggNOG:COG0642
BRENDA:2.7.13.3 GO:GO:0018106 GO:GO:0044010 EMBL:M28242 EMBL:L11272
PIR:H64991 RefSeq:NP_416722.2 PDB:2AYX PDB:2AYY PDB:2AYZ
PDBsum:2AYX PDBsum:2AYY PDBsum:2AYZ ProteinModelPortal:P14376
SMR:P14376 DIP:DIP-10647N IntAct:P14376 MINT:MINT-1267658
PRIDE:P14376 EnsemblBacteria:EBESCT00000001645
EnsemblBacteria:EBESCT00000017555 GeneID:948993 KEGG:eco:b2218
PATRIC:32119795 EchoBASE:EB0815 EcoGene:EG10822
HOGENOM:HOG000122300 KO:K07677 OMA:HPINRSL ProtClustDB:PRK10841
BioCyc:EcoCyc:RCSC-MONOMER BioCyc:ECOL316407:JW5917-MONOMER
BioCyc:ECOL316407:JW5920-MONOMER EvolutionaryTrace:P14376
Genevestigator:P14376 Uniprot:P14376
Length = 949
Score = 127 (49.8 bits), Expect = 3.2e-05, P = 3.2e-05
Identities = 35/99 (35%), Positives = 58/99 (58%)
Query: 7 KCNRAEIALDMLRT-NKNGYDIVISDVHMPDMDGFKLLELVG-LEMDLPVIMMCAHGSKE 64
+C A +D L +KN DIV+SDV+MP+MDG++L + + L + LPVI + A+ E
Sbjct: 850 QCKTANDGVDALNVLSKNHIDIVLSDVNMPNMDGYRLTQRIRQLGLTLPVIGVTANALAE 909
Query: 65 VVMKGVTH--DACDYLTKPVRIEELKN-IWQHVVRKRKN 100
+ + D+C L+KPV ++ +K + + R RK+
Sbjct: 910 EKQRCLESGMDSC--LSKPVTLDVIKQTLTLYAERVRKS 946
>TIGR_CMR|GSU_1989 [details] [associations]
symbol:GSU_1989 "sigma-54 dependent DNA-binding response
regulator" species:243231 "Geobacter sulfurreducens PCA"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PRINTS:PR01590
PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382 SMART:SM00448
GO:GO:0005524 GO:GO:0035556 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000058489
InterPro:IPR025662 InterPro:IPR025944 PROSITE:PS00675
PROSITE:PS00688 RefSeq:NP_953038.1 ProteinModelPortal:Q74BQ2
GeneID:2686140 KEGG:gsu:GSU1989 PATRIC:22026841 OMA:IARSLHY
ProtClustDB:CLSK743130 BioCyc:GSUL243231:GH27-2007-MONOMER
Uniprot:Q74BQ2
Length = 444
Score = 123 (48.4 bits), Expect = 3.3e-05, P = 3.3e-05
Identities = 34/115 (29%), Positives = 58/115 (50%)
Query: 2 GFSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVGLEM-DLPVIMMCAH 60
G +V + A A +L++ D +I+D+ MP DG +L E V + D+PVI + A+
Sbjct: 26 GHTVLTASDASKAEHILKSRD--VDAIITDLRMPGRDGMQLFEHVTEHLPDIPVIFLTAY 83
Query: 61 GSKEVVMKGVTHDACDYLTKPVRIEELKNIWQHVVRKRKNERKDLEQSGSVEGGA 115
G+ + + +T A Y KP +LK++ V +R +R+ E V G+
Sbjct: 84 GTVDSAVNAITRGAFYYFIKPPDYVKLKSMVARAVEQRALKREVAELRKRVAAGS 138
>TIGR_CMR|GSU_2915 [details] [associations]
symbol:GSU_2915 "sigma-54 dependent DNA-binding response
regulator" species:243231 "Geobacter sulfurreducens PCA"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PRINTS:PR01590
PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382 SMART:SM00448
GO:GO:0005524 GO:GO:0035556 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000058489
InterPro:IPR025662 InterPro:IPR025943 InterPro:IPR025944
PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688 RefSeq:NP_953957.1
ProteinModelPortal:Q748T6 GeneID:2688534 KEGG:gsu:GSU2915
PATRIC:22028689 OMA:AFRYRMK ProtClustDB:CLSK829000
BioCyc:GSUL243231:GH27-2910-MONOMER Uniprot:Q748T6
Length = 457
Score = 123 (48.4 bits), Expect = 3.5e-05, P = 3.5e-05
Identities = 33/107 (30%), Positives = 58/107 (54%)
Query: 2 GFSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVG-LEMDLPVIMMCAH 60
G+ V E AL ++R + D+V+ D+ +P + G + LE + + ++ VIM+ AH
Sbjct: 27 GYDVVSAGNGEDALRIVREEQP--DLVLLDIQLPGISGLEALEKIKEYDEEILVIMVTAH 84
Query: 61 GSKEVVMKGVTHDACDYLTKPVRIEELKNIWQHVVRKRKNERKDLEQ 107
G+ E + + A DY+ KP ++E+ +I V+RK E DL +
Sbjct: 85 GALETAVHAMRLGAYDYINKPFNLDEM-SI---VIRKAL-ETSDLRR 126
>TIGR_CMR|BA_4833 [details] [associations]
symbol:BA_4833 "DNA-binding response regulator PhoP"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] [GO:0006796
"phosphate-containing compound metabolic process" evidence=ISS]
InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486
PROSITE:PS50110 SMART:SM00448 SMART:SM00862 GO:GO:0006355
GO:GO:0035556 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003677 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034819 HSSP:P08402 KO:K07658
RefSeq:NP_847036.1 RefSeq:YP_021478.1 RefSeq:YP_030731.1
ProteinModelPortal:Q81L01 SMR:Q81L01 DNASU:1086976
EnsemblBacteria:EBBACT00000010602 EnsemblBacteria:EBBACT00000014654
EnsemblBacteria:EBBACT00000019808 GeneID:1086976 GeneID:2814633
GeneID:2851563 KEGG:ban:BA_4833 KEGG:bar:GBAA_4833 KEGG:bat:BAS4484
OMA:LYLGRHK ProtClustDB:CLSK887707
BioCyc:BANT260799:GJAJ-4541-MONOMER
BioCyc:BANT261594:GJ7F-4695-MONOMER Uniprot:Q81L01
Length = 239
Score = 118 (46.6 bits), Expect = 3.6e-05, P = 3.6e-05
Identities = 53/214 (24%), Positives = 101/214 (47%)
Query: 2 GFSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVGLEMDL-PVIMMCAH 60
GF V E+AL T + D++I D+ +P MDG ++ + + L+ + P++M+ A
Sbjct: 26 GFEVITAMDGEMALQKATTERP--DLIILDLMLPKMDGMEVCKELRLQRVMTPILMLTAK 83
Query: 61 GSKEVVMKGVTHDACDYLTKPVRIEELKNIWQHVVRKRKNERKD--LEQSGSVEGGAQQP 118
+ + G+ A DY+TKP E+ + ++R+ K ++++ E S +
Sbjct: 84 DDEFDKVLGLELGADDYMTKPFSPREVVARVKAILRRTKLQQEEQVTETSDEESITIAEL 143
Query: 119 KPFEESDDSYSVNEGTSNSRKDEEEEAEKRLKKPRLVWSVELHQQFVSAVKELGFDKAGP 178
K E ++Y +G +E E L K + V Q +SAV +D AG
Sbjct: 144 KILPEFYEAYF--QGRKLELTPKEFELLVYLAKNKS--RVLTRDQLLSAV--WNYDFAGD 197
Query: 179 KKILELMNIPGLTRENVASHLQKHRLYLSRLSGV 212
+I+++ +I L R+ + + +K Y+ + G+
Sbjct: 198 TRIVDV-HISHL-RDKIEQNTKKPT-YIKTIRGL 228
>TIGR_CMR|GSU_0789 [details] [associations]
symbol:GSU_0789 "response regulator" species:243231
"Geobacter sulfurreducens PCA" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034820
RefSeq:NP_951846.1 ProteinModelPortal:Q74F20 GeneID:2685295
KEGG:gsu:GSU0789 PATRIC:22024339 OMA:HAVAARN
BioCyc:GSUL243231:GH27-807-MONOMER Uniprot:Q74F20
Length = 125
Score = 101 (40.6 bits), Expect = 3.9e-05, P = 3.9e-05
Identities = 23/65 (35%), Positives = 35/65 (53%)
Query: 27 IVISDVHMPDMDGFKLLELVG-LEMDLPVIMMCAHGSKEVVMKGVTHDACDYLTKPVRIE 85
+++ D+ +PD DG ++L V L LPV+MM A+ EVV A D+L KP E
Sbjct: 53 LLLQDMRLPDADGLEILHRVKELRPALPVVMMTAYACDEVVRAAFDGGASDFLPKPFTRE 112
Query: 86 ELKNI 90
+ +
Sbjct: 113 AVLGV 117
>TIGR_CMR|SO_2426 [details] [associations]
symbol:SO_2426 "DNA-binding response regulator"
species:211586 "Shewanella oneidensis MR-1" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] InterPro:IPR001789
InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622
EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034819 HSSP:P08402
KO:K02483 RefSeq:NP_718016.2 ProteinModelPortal:Q8EEF6
GeneID:1170140 KEGG:son:SO_2426 PATRIC:23524467 OMA:CLEMSRI
ProtClustDB:CLSK906726 Uniprot:Q8EEF6
Length = 227
Score = 117 (46.2 bits), Expect = 4.0e-05, P = 4.0e-05
Identities = 47/157 (29%), Positives = 78/157 (49%)
Query: 26 DIVISDVHMPDMDGFKLLELVGLEMDLPVIMMCAHGSKEVVMKGVTHDACDYLTKPVRIE 85
DIV+ D+ MP MDGF+LL+ E P++M+ A ++E ++ A D+LTKP I+
Sbjct: 47 DIVMLDLVMPQMDGFELLQ--ARECMTPIMMLSARDNEEDRIRSYELGADDFLTKPFSIK 104
Query: 86 ELKNIWQHVVRKRKNERKD---LEQSGSVEGGAQQPKPFEESDDSYSVNEGTSNSRKDEE 142
EL Q + R+ K +EQ ++ Q F+E+ +Y + G +
Sbjct: 105 ELLVRLQAIERRLVQRPKPPMAVEQVATI-----QSVRFDET--AYKITIGKHAVELTQT 157
Query: 143 E-EAEKRL--KKPRLVWSVELHQQFVSAVKELG-FDK 175
E K L +K +++ EL + + K+LG FD+
Sbjct: 158 EFRLFKYLFERKGQVITKQELQKSVLQ--KDLGRFDR 192
>TIGR_CMR|GSU_2574 [details] [associations]
symbol:GSU_2574 "response regulator" species:243231
"Geobacter sulfurreducens PCA" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001789
InterPro:IPR003607 InterPro:IPR006674 Pfam:PF00072 Pfam:PF01966
PROSITE:PS50110 SMART:SM00448 SMART:SM00471 GO:GO:0006355
GO:GO:0035556 GO:GO:0046872 GO:GO:0008152 GO:GO:0005622
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0008081
Gene3D:1.10.3210.10 HOGENOM:HOG000266481 RefSeq:NP_953620.1
ProteinModelPortal:Q74A17 GeneID:2686365 KEGG:gsu:GSU2574
PATRIC:22028001 KO:K07814 OMA:HTRRISE ProtClustDB:CLSK746108
BioCyc:GSUL243231:GH27-2551-MONOMER Uniprot:Q74A17
Length = 368
Score = 121 (47.7 bits), Expect = 4.1e-05, P = 4.1e-05
Identities = 52/171 (30%), Positives = 86/171 (50%)
Query: 11 AEIALDMLRT-NKNG-YDIVISDVHMPDMDGFKLLELVG---LEMDLPVIMMCAHGSKEV 65
A+ L+ LR +KN D+++ D+ MP+++GF L + L D+PVI++ A SK+
Sbjct: 33 AQNGLEALRVLDKNSAIDLILLDLEMPELNGFATLATLKKHPLWCDIPVIVLTA--SKDE 90
Query: 66 VMKGVTHDACDYLTKPVRIEELK-NIWQHVVRKRKNERKDLEQSGSVEGGAQQPKPFEES 124
V + + A D+L KP EEL+ + HV R + DL Q V G ++ E +
Sbjct: 91 VTRTLRLGANDFLAKPYDTEELRLRVMNHV---RAKKLVDLSQD--VNGILER----EVA 141
Query: 125 DDSYSVNEGTSNSRKDEEEEAEKRLKKPRLVWSVE--LHQQFVSAV-KELG 172
+ V + +R + E E RL + VE +H + +S + +ELG
Sbjct: 142 RKTAEVRNALAMAR-EAEYEITLRLGRAAEFRDVETGMHTRRISEMARELG 191
>UNIPROTKB|P0AE88 [details] [associations]
symbol:cpxR "CpxR transcriptional dual regulator"
species:83333 "Escherichia coli K-12" [GO:0000156 "phosphorelay
response regulator activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0035556 "intracellular signal
transduction" evidence=IEA] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=ISS;IDA] [GO:0045893
"positive regulation of transcription, DNA-dependent"
evidence=ISS;IDA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS;IDA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] InterPro:IPR001789
InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0005737 GO:GO:0045892
GO:GO:0045893 GO:GO:0035556 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0003677
GO:GO:0003700 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 EMBL:L19201
eggNOG:COG0745 HOGENOM:HOG000034819 EMBL:M36795 EMBL:X13307
EMBL:L14579 PIR:C65197 RefSeq:NP_418348.1 RefSeq:YP_491538.1
ProteinModelPortal:P0AE88 SMR:P0AE88 DIP:DIP-47991N IntAct:P0AE88
MINT:MINT-1292432 PaxDb:P0AE88 EnsemblBacteria:EBESCT00000002313
EnsemblBacteria:EBESCT00000017066 GeneID:12933651 GeneID:948404
KEGG:ecj:Y75_p3274 KEGG:eco:b3912 PATRIC:32123337 EchoBASE:EB0019
EcoGene:EG10020 KO:K07662 OMA:YQTPVIM ProtClustDB:PRK10955
BioCyc:EcoCyc:CPXR-MONOMER BioCyc:ECOL316407:JW3883-MONOMER
Genevestigator:P0AE88 Uniprot:P0AE88
Length = 232
Score = 117 (46.2 bits), Expect = 4.3e-05, P = 4.3e-05
Identities = 35/110 (31%), Positives = 57/110 (51%)
Query: 2 GFSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVGLEMDLPVIMMCAHG 61
GF+V + E ALD+L + D+++ DV MP +G L+ + PVIM+ A G
Sbjct: 25 GFNVIVAHDGEQALDLL---DDSIDLLLLDVMMPKKNGIDTLKALRQTHQTPVIMLTARG 81
Query: 62 SKEVVMKGVTHDACDYLTKPVRIEELKNIWQHVVRKRK-NERKDLEQSGS 110
S+ + G+ A DYL KP EL + ++R+ +E++ +GS
Sbjct: 82 SELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWSEQQQNNDNGS 131
>TIGR_CMR|GSU_0776 [details] [associations]
symbol:GSU_0776 "sigma-54 dependent DNA-binding response
regulator" species:243231 "Geobacter sulfurreducens PCA"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=ISS]
InterPro:IPR001789 InterPro:IPR002078 InterPro:IPR002197
InterPro:IPR003593 InterPro:IPR009057 Pfam:PF00072 Pfam:PF00158
Pfam:PF02954 PRINTS:PR01590 PROSITE:PS50045 PROSITE:PS50110
SMART:SM00382 SMART:SM00448 GO:GO:0005524 GO:GO:0035556
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 GO:GO:0005622
Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000058489
InterPro:IPR025662 InterPro:IPR025943 InterPro:IPR025944
PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688 HSSP:P06143
RefSeq:NP_951833.1 ProteinModelPortal:Q74F33 GeneID:2685232
KEGG:gsu:GSU0776 PATRIC:22024313 OMA:KELPIWR ProtClustDB:CLSK828021
BioCyc:GSUL243231:GH27-778-MONOMER Uniprot:Q74F33
Length = 465
Score = 122 (48.0 bits), Expect = 4.7e-05, P = 4.7e-05
Identities = 26/66 (39%), Positives = 41/66 (62%)
Query: 26 DIVISDVHMPDMDGFKLLELVG-LEMDLPVIMMCAHGSKEVVMKGVTHDACDYLTKPVRI 84
DI++ DV MPDMDG ++L+ V L LPV++M A G+ + + + A DY+TKP
Sbjct: 52 DILLQDVRMPDMDGIEVLKRVKKLRPSLPVVVMTAFGTIDSAVDAIKLGAYDYVTKPFPR 111
Query: 85 EELKNI 90
E++ +
Sbjct: 112 EKILGV 117
>UNIPROTKB|P76340 [details] [associations]
symbol:yedW "predicted DNA-binding response regulator in
two-component system with YedV" species:83333 "Escherichia coli
K-12" [GO:0005622 "intracellular" evidence=IEA] [GO:0000156
"phosphorelay response regulator activity" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0035556 "intracellular signal transduction"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA;ISS] InterPro:IPR001789
InterPro:IPR001867 InterPro:IPR006291 InterPro:IPR016032
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0005737 GO:GO:0006355 GO:GO:0035556 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745
SUPFAM:SSF46894 HOGENOM:HOG000034815 TIGRFAMs:TIGR01387 KO:K02483
PIR:E64961 RefSeq:NP_416478.2 RefSeq:YP_490219.1
ProteinModelPortal:P76340 SMR:P76340 DIP:DIP-11853N IntAct:P76340
MINT:MINT-1223015 PRIDE:P76340 EnsemblBacteria:EBESCT00000004539
EnsemblBacteria:EBESCT00000015627 GeneID:12931392 GeneID:946486
KEGG:ecj:Y75_p1936 KEGG:eco:b1969 PATRIC:32119269 EchoBASE:EB3798
EcoGene:EG14045 OMA:MTYDLWH ProtClustDB:PRK11517
BioCyc:EcoCyc:G7057-MONOMER BioCyc:ECOL316407:JW5322-MONOMER
Genevestigator:P76340 Uniprot:P76340
Length = 223
Score = 116 (45.9 bits), Expect = 5.0e-05, P = 5.0e-05
Identities = 28/88 (31%), Positives = 46/88 (52%)
Query: 22 KNGYDIVISDVHMPDMDGFKLLELVGLEMDLPVIMMCAHGSKEVVMKGVTHDACDYLTKP 81
K+ Y ++I D+ +P MDG+++L+ + PVI + A S + ++G+ A DYL KP
Sbjct: 42 KDDYALIILDIMLPGMDGWQILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKP 101
Query: 82 VRIEELKNIWQHVVRKRKNERKDLEQSG 109
EL + +R+ LE SG
Sbjct: 102 FSFSELLARVRAQLRQHHALNSTLEISG 129
>TIGR_CMR|CPS_1520 [details] [associations]
symbol:CPS_1520 "chemotaxis protein CheY" species:167879
"Colwellia psychrerythraea 34H" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0784 HOGENOM:HOG000034820 OMA:LEANDIY
KO:K03413 RefSeq:YP_268262.1 ProteinModelPortal:Q485K3 SMR:Q485K3
STRING:Q485K3 GeneID:3522501 KEGG:cps:CPS_1520 PATRIC:21466247
BioCyc:CPSY167879:GI48-1601-MONOMER Uniprot:Q485K3
Length = 127
Score = 100 (40.3 bits), Expect = 5.0e-05, P = 5.0e-05
Identities = 26/92 (28%), Positives = 46/92 (50%)
Query: 1 MGFS-VTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVGLEMDL---PVIM 56
+GF+ + + + AL ML+ +D V++D +MP M G LL+ + + +L PV++
Sbjct: 27 LGFTNIQEADDGNTALPMLQGGD--FDFVVTDWNMPGMQGIDLLKAIRADANLSHIPVLL 84
Query: 57 MCAHGSKEVVMKGVTHDACDYLTKPVRIEELK 88
+ A KE ++ Y+ KP LK
Sbjct: 85 ITAEAKKEQIIMAAQAGVNGYIVKPFTAATLK 116
>UNIPROTKB|O69730 [details] [associations]
symbol:tcrX "Probable transcriptional regulatory protein
TcrX" species:1773 "Mycobacterium tuberculosis" [GO:0005515
"protein binding" evidence=IPI] [GO:0010106 "cellular response to
iron ion starvation" evidence=IEP] InterPro:IPR001789
InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0005737 GO:GO:0006355
GenomeReviews:AL123456_GR GO:GO:0035556 GO:GO:0003677 EMBL:BX842584
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0010106
HOGENOM:HOG000034815 HSSP:Q9WYN0 KO:K02483 EMBL:X99370 PIR:F70801
RefSeq:NP_218282.1 RefSeq:YP_006517260.1 ProteinModelPortal:O69730
SMR:O69730 EnsemblBacteria:EBMYCT00000002612 GeneID:13317384
GeneID:886100 KEGG:mtu:Rv3765c KEGG:mtv:RVBD_3765c PATRIC:18156979
TubercuList:Rv3765c OMA:TELLSMA ProtClustDB:CLSK792706
Uniprot:O69730
Length = 234
Score = 116 (45.9 bits), Expect = 5.8e-05, P = 5.8e-05
Identities = 29/87 (33%), Positives = 47/87 (54%)
Query: 2 GFSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVGLEMD-LPVIMMCAH 60
G+++T A+ R + D+V+ DV +PDM G +L + E LPV+++ A
Sbjct: 32 GWNITTAGDGSSAIAAARRQRP--DVVVLDVMLPDMSGLDVLHKLRSENPGLPVLLLTAK 89
Query: 61 GSKEVVMKGVTHDACDYLTKPVRIEEL 87
+ E + G+T DY+TKP IEE+
Sbjct: 90 DAVEDRIAGLTAGGDDYVTKPFSIEEV 116
>TAIR|locus:2125771 [details] [associations]
symbol:AT4G04580 "AT4G04580" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0003677 GO:GO:0003700 GO:GO:0003682
EMBL:AL161501 Gene3D:1.10.10.60 SUPFAM:SSF46689 HSSP:O49397
InterPro:IPR017930 InterPro:IPR006447 TIGRFAMs:TIGR01557
PROSITE:PS51294 EMBL:AF074021 IPI:IPI00541303 PIR:G85057
RefSeq:NP_192367.1 UniGene:At.54143 ProteinModelPortal:Q9XEB2
SMR:Q9XEB2 EnsemblPlants:AT4G04580.1 GeneID:825790
KEGG:ath:AT4G04580 TAIR:At4g04580 eggNOG:NOG300503
HOGENOM:HOG000153846 InParanoid:Q9XEB2 OMA:RDLTISH PhylomeDB:Q9XEB2
ProtClustDB:CLSN2915807 ArrayExpress:Q9XEB2 Genevestigator:Q9XEB2
Uniprot:Q9XEB2
Length = 166
Score = 110 (43.8 bits), Expect = 5.9e-05, P = 5.9e-05
Identities = 23/57 (40%), Positives = 37/57 (64%)
Query: 148 RLKKPRLVWSVELHQQFVSAVKELGFDK-AGPKKILELMNIPGLTRENVASHLQKHR 203
R PR+ W+ +L +F+ +++LG ++ A PK+IL LM + LT +V SHLQ +R
Sbjct: 11 RSDNPRMHWTDDLDIRFIQVIEKLGGEESATPKRILSLMGVRDLTISHVKSHLQMYR 67
>UNIPROTKB|Q48GG3 [details] [associations]
symbol:cheY2 "Chemotaxis protein CheY" species:264730
"Pseudomonas syringae pv. phaseolicola 1448A" [GO:0004871 "signal
transducer activity" evidence=ISS] [GO:0006935 "chemotaxis"
evidence=ISS] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 GO:GO:0006355 GO:GO:0035556 GO:GO:0005622
GO:GO:0006935 GO:GO:0004871 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 EMBL:CP000058 GenomeReviews:CP000058_GR
eggNOG:COG0784 HOGENOM:HOG000034820 KO:K03413 RefSeq:YP_275520.1
ProteinModelPortal:Q48GG3 SMR:Q48GG3 STRING:Q48GG3 GeneID:3558182
KEGG:psp:PSPPH_3362 PATRIC:19976130 OMA:GHYDFLV
ProtClustDB:CLSK642753 Uniprot:Q48GG3
Length = 124
Score = 99 (39.9 bits), Expect = 6.5e-05, P = 6.5e-05
Identities = 27/92 (29%), Positives = 47/92 (51%)
Query: 1 MGFSVT-KCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVGLE---MDLPVIM 56
+GF+ T + + AL ML++ +D +++D +MP M G LL V + LPV+M
Sbjct: 23 LGFTNTSEADDGLTALPMLQSG--AFDFLVTDWNMPGMTGIDLLRQVRADERLKSLPVLM 80
Query: 57 MCAHGSKEVVMKGVTHDACDYLTKPVRIEELK 88
+ A +E +++ Y+ KP + LK
Sbjct: 81 VTAEAKREQIIEAAQAGVNGYVVKPFTAQALK 112
>TIGR_CMR|GSU_0403 [details] [associations]
symbol:GSU_0403 "chemotaxis protein CheY" species:243231
"Geobacter sulfurreducens PCA" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413 HSSP:P06143
RefSeq:NP_951462.1 ProteinModelPortal:Q74G46 GeneID:2685717
KEGG:gsu:GSU0403 PATRIC:22023550 OMA:MEGKSID ProtClustDB:CLSK827806
BioCyc:GSUL243231:GH27-435-MONOMER Uniprot:Q74G46
Length = 120
Score = 99 (39.9 bits), Expect = 6.5e-05, P = 6.5e-05
Identities = 16/63 (25%), Positives = 38/63 (60%)
Query: 26 DIVISDVHMPDMDGFKLLELVGLE-MDLPVIMMCAHGSKEVVMKGVTHDACDYLTKPVRI 84
D+++SD++MP+MDG + ++ P++M+ G ++++ + ++ A D + KP
Sbjct: 50 DLILSDINMPNMDGLEFIKQARANGHKAPIVMITTEGGEDILKEAISSGASDSIKKPFTP 109
Query: 85 EEL 87
++L
Sbjct: 110 DQL 112
>TIGR_CMR|GSU_2212 [details] [associations]
symbol:GSU_2212 "chemotaxis protein CheY" species:243231
"Geobacter sulfurreducens PCA" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413 HSSP:P06143
RefSeq:NP_953261.1 ProteinModelPortal:Q74AY7 GeneID:2687085
KEGG:gsu:GSU2212 PATRIC:22027279 OMA:SSAMRRQ ProtClustDB:CLSK924580
BioCyc:GSUL243231:GH27-2150-MONOMER Uniprot:Q74AY7
Length = 128
Score = 99 (39.9 bits), Expect = 6.5e-05, P = 6.5e-05
Identities = 24/85 (28%), Positives = 46/85 (54%)
Query: 2 GFSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVGLEMD---LPVIMMC 58
G S+ + + L L + + D++++D++MP MDG KL+ LV + LP+ ++
Sbjct: 28 GISIVEASDGVDGLKKL--SAHAIDLILTDINMPVMDGLKLVSLVRSDPSHRHLPIAIIT 85
Query: 59 AHGSKEVVMKGVTHDACDYLTKPVR 83
G+ E + + A Y+TKP++
Sbjct: 86 TEGAAEDRERALALGANAYITKPIQ 110
>TIGR_CMR|GSU_2946 [details] [associations]
symbol:GSU_2946 "DNA-binding heavy metal response
regulator" species:243231 "Geobacter sulfurreducens PCA"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] [GO:0003677 "DNA binding" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=ISS]
InterPro:IPR001789 InterPro:IPR001867 InterPro:IPR006291
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0006355 GO:GO:0035556 GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034815 KO:K07665 TIGRFAMs:TIGR01387
HSSP:Q9WYN0 RefSeq:NP_953988.1 ProteinModelPortal:Q748Q5
GeneID:2688389 KEGG:gsu:GSU2946 PATRIC:22028753 OMA:GYMLEIP
ProtClustDB:CLSK743174 BioCyc:GSUL243231:GH27-2897-MONOMER
Uniprot:Q748Q5
Length = 223
Score = 115 (45.5 bits), Expect = 6.8e-05, P = 6.8e-05
Identities = 35/112 (31%), Positives = 58/112 (51%)
Query: 2 GFSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVGLE-MDLPVIMMCAH 60
GF+ + L + RT YD++I D+ +P DG+++LE + E ++PVI + A
Sbjct: 24 GFTADTAASGDDGLHLARTEN--YDLIILDIMLPGRDGWEVLEELRKEGSEVPVIYLSAR 81
Query: 61 GSKEVVMKGVTHDACDYLTKPVRIEELKNIWQHVVRK---RKNER---KDLE 106
+ ++G+ A DYL KP EL + ++R+ R+ ER DLE
Sbjct: 82 DAVHDRVRGLELGADDYLVKPFAFSELLARARTILRRGPSRQPERLRADDLE 133
>UNIPROTKB|P0AFU4 [details] [associations]
symbol:glrR "GlrR DNA-binding transcriptional activator"
species:83333 "Escherichia coli K-12" [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0035556 "intracellular signal
transduction" evidence=IEA;IMP] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;IEP] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000160 "phosphorelay signal transduction system"
evidence=IEA;IMP] [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;IMP] [GO:0006351 "transcription,
DNA-dependent" evidence=ISS;IDA] InterPro:IPR001789
InterPro:IPR002078 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 PROSITE:PS50045 PROSITE:PS50110
SMART:SM00382 SMART:SM00448 GO:GO:0005524 GO:GO:0005737
GO:GO:0006355 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0003677 GO:GO:0006351
Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:U36841 GO:GO:0017111
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG2204
HOGENOM:HOG000058489 InterPro:IPR025662 InterPro:IPR025943
InterPro:IPR025944 PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688
EMBL:M16778 EMBL:S67014 EMBL:Z21843 PIR:A65033 RefSeq:NP_417049.1
RefSeq:YP_490782.1 ProteinModelPortal:P0AFU4 SMR:P0AFU4
IntAct:P0AFU4 MINT:MINT-1317436 PRIDE:P0AFU4
EnsemblBacteria:EBESCT00000000551 EnsemblBacteria:EBESCT00000014286
GeneID:12930208 GeneID:947042 KEGG:ecj:Y75_p2507 KEGG:eco:b2554
PATRIC:32120507 EchoBASE:EB1262 EcoGene:EG11285 KO:K07715
OMA:FAEIQKH ProtClustDB:PRK15115 BioCyc:EcoCyc:EG11285-MONOMER
BioCyc:ECOL316407:JW2538-MONOMER Genevestigator:P0AFU4
Uniprot:P0AFU4
Length = 444
Score = 120 (47.3 bits), Expect = 7.5e-05, P = 7.5e-05
Identities = 31/83 (37%), Positives = 46/83 (55%)
Query: 2 GFSVTKCNRAEIALDMLRT-NKNGYDIVISDVHMPDMDGFKLL-ELVGLEMDLPVIMMCA 59
G+SV AE + LR N+ D+VISD+ M +MDG +L E+ ++ +PVI++ A
Sbjct: 29 GYSVVT---AESGAEGLRVLNREKVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTA 85
Query: 60 HGSKEVVMKGVTHDACDYLTKPV 82
HGS + +LTKPV
Sbjct: 86 HGSIPDAVAATQQGVFSFLTKPV 108
>TIGR_CMR|SPO_0251 [details] [associations]
symbol:SPO_0251 "DNA-binding response regulator PetR"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0000156 "phosphorelay
response regulator activity" evidence=ISS] [GO:0000160
"phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR001789 InterPro:IPR001867 InterPro:IPR016032
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0006355 GO:GO:0035556 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0003677 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0006351 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034819
SUPFAM:SSF46894 KO:K07659 RefSeq:YP_165515.1
ProteinModelPortal:Q5LX38 GeneID:3196152 KEGG:sil:SPO0251
PATRIC:23373753 OMA:DRGQAQE ProtClustDB:CLSK933195 Uniprot:Q5LX38
Length = 233
Score = 115 (45.5 bits), Expect = 7.8e-05, P = 7.8e-05
Identities = 29/86 (33%), Positives = 43/86 (50%)
Query: 2 GFSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVGLEMDLPVIMMCAHG 61
GF VT AE A +L + +D+++ DV MP DG L + + P++++ A G
Sbjct: 29 GFLVTAARDAEHARRIL--SGLDFDLIVMDVMMPGEDGVSLTRALRQTLSTPILLLTARG 86
Query: 62 SKEVVMKGVTHDACDYLTKPVRIEEL 87
E + G+ A DYL KP EL
Sbjct: 87 ETEHRIAGLEAGADDYLAKPFEPREL 112
>TIGR_CMR|GSU_0372 [details] [associations]
symbol:GSU_0372 "sigma-54 dependent DNA-binding response
regulator" species:243231 "Geobacter sulfurreducens PCA"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PRINTS:PR01590
PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382 SMART:SM00448
GO:GO:0005524 GO:GO:0035556 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000058489
InterPro:IPR025662 InterPro:IPR025943 PROSITE:PS00675
PROSITE:PS00676 HSSP:P10957 RefSeq:NP_951431.2 GeneID:2686674
KEGG:gsu:GSU0372 PATRIC:22023488 ProtClustDB:CLSK827784
BioCyc:GSUL243231:GH27-388-MONOMER Uniprot:Q74G75
Length = 455
Score = 120 (47.3 bits), Expect = 7.8e-05, P = 7.8e-05
Identities = 35/116 (30%), Positives = 63/116 (54%)
Query: 3 FSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLE-LVGLEMDLPVIMMCAHG 61
+ T + AL +L ++ +D++++D+ M M G +LLE L+ + +IMM AHG
Sbjct: 27 YETTTAAGGQEALALL--DEREFDVILTDLKMQGMSGMELLERLLAADPQQCIIMMTAHG 84
Query: 62 SKEVVMKGVTHDACDYLTKPVRIEELK-NIWQHVVRKR--KNER---KDLEQSGSV 111
+ + ++ + A DYL KP+ + L + + V R R K R K LE++G++
Sbjct: 85 TVDSAVEAMKKGAFDYLEKPLERDTLLLTLRRAVERVRLLKENRALHKKLEETGAI 140
>TIGR_CMR|CHY_0092 [details] [associations]
symbol:CHY_0092 "DNA-binding response regulator"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072
Pfam:PF00486 PROSITE:PS50110 SMART:SM00448 SMART:SM00862
GO:GO:0006355 GO:GO:0035556 GO:GO:0003677 EMBL:CP000141
GenomeReviews:CP000141_GR Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
eggNOG:COG0745 HOGENOM:HOG000034819 RefSeq:YP_358964.1
ProteinModelPortal:Q3AFX0 STRING:Q3AFX0 GeneID:3728314
KEGG:chy:CHY_0092 PATRIC:21273381 OMA:KLANKEF
BioCyc:CHYD246194:GJCN-92-MONOMER Uniprot:Q3AFX0
Length = 234
Score = 115 (45.5 bits), Expect = 7.9e-05, P = 7.9e-05
Identities = 25/73 (34%), Positives = 42/73 (57%)
Query: 25 YDIVISDVHMPDMDGFKLLELVGLEMDLPVIMMCAHGSKEVVMKGVTHDACDYLTKPVRI 84
YD+++ D+ +P +DGF++L V E D PV+++ A ++G+ A DY+TKP
Sbjct: 46 YDLILLDLMLPGIDGFEVLRKVRAEKDTPVLLVSARREDIDKIRGLGLGADDYITKPFSP 105
Query: 85 EEL-KNIWQHVVR 96
EL + H+ R
Sbjct: 106 SELVARVKAHIGR 118
>UNIPROTKB|P0AFB8 [details] [associations]
symbol:glnG "NtrC transcriptional dual regulator"
species:83333 "Escherichia coli K-12" [GO:0050906 "detection of
stimulus involved in sensory perception" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0035556 "intracellular signal transduction"
evidence=IEA] [GO:0009399 "nitrogen fixation" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000160 "phosphorelay signal transduction system" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
InterPro:IPR001789 InterPro:IPR002078 InterPro:IPR002197
InterPro:IPR003593 InterPro:IPR009057 InterPro:IPR010114
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PRINTS:PR01590
PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382 SMART:SM00448
GO:GO:0005524 GO:GO:0035556 GO:GO:0009399 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 GO:GO:0005622 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0017111 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 EMBL:L19201 eggNOG:COG2204 HOGENOM:HOG000058489
InterPro:IPR025662 InterPro:IPR025943 InterPro:IPR025944
PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688 EMBL:X05173
EMBL:D16509 PIR:B30377 RefSeq:NP_418304.1 RefSeq:YP_491582.1
ProteinModelPortal:P0AFB8 SMR:P0AFB8 IntAct:P0AFB8
EnsemblBacteria:EBESCT00000001207 EnsemblBacteria:EBESCT00000001208
EnsemblBacteria:EBESCT00000001209 EnsemblBacteria:EBESCT00000015316
GeneID:12933634 GeneID:948361 KEGG:ecj:Y75_p3318 KEGG:eco:b3868
PATRIC:32123239 EchoBASE:EB0380 EcoGene:EG10385 KO:K07712
OMA:ARGQSNL ProtClustDB:PRK10923 BioCyc:EcoCyc:PROTEIN-NRI
BioCyc:ECOL316407:JW3839-MONOMER BindingDB:P0AFB8 ChEMBL:CHEMBL3552
Genevestigator:P0AFB8 GO:GO:0050906 TIGRFAMs:TIGR01818
Uniprot:P0AFB8
Length = 469
Score = 120 (47.3 bits), Expect = 8.2e-05, P = 8.2e-05
Identities = 30/79 (37%), Positives = 43/79 (54%)
Query: 9 NRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVGLEMD-LPVIMMCAHGSKEVVM 67
N AE+ L+ L + D+++SD+ MP MDG LL+ + LPVI+M AH + +
Sbjct: 35 NGAEV-LEALASKTP--DVLLSDIRMPGMDGLALLKQIKQRHPMLPVIIMTAHSDLDAAV 91
Query: 68 KGVTHDACDYLTKPVRIEE 86
A DYL KP I+E
Sbjct: 92 SAYQQGAFDYLPKPFDIDE 110
>TIGR_CMR|ECH_1012 [details] [associations]
symbol:ECH_1012 "DNA-binding response regulator"
species:205920 "Ehrlichia chaffeensis str. Arkansas" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] InterPro:IPR001789
InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
GO:GO:0003677 EMBL:CP000236 GenomeReviews:CP000236_GR
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745
HOGENOM:HOG000034815 RefSeq:YP_507798.1 ProteinModelPortal:Q2GFI5
STRING:Q2GFI5 GeneID:3927952 KEGG:ech:ECH_1012 PATRIC:20577398
OMA:GISEMDS ProtClustDB:CLSK749538
BioCyc:ECHA205920:GJNR-1015-MONOMER Uniprot:Q2GFI5
Length = 265
Score = 116 (45.9 bits), Expect = 8.2e-05, P = 8.2e-05
Identities = 29/93 (31%), Positives = 53/93 (56%)
Query: 22 KNG-YDIVISDVHMPD-MDGFKLL-ELVGLEMDLPVIMMCAHGSKEVVMKGVTHDACDYL 78
KN YD+VI D+H P +DG+ +L +L + +PV+++ S +KG+ + A DY+
Sbjct: 43 KNDDYDVVILDIHFPGKIDGYDILVKLRESGIKVPVLILSCISSVSHKVKGLYYGADDYV 102
Query: 79 TKPVRIEELKNIWQHVVRKRKNERKDLEQSGSV 111
TKP EL + +VR+ + + + + G++
Sbjct: 103 TKPFHKSELLARIKAIVRRTRGHPESIVRVGNI 135
>UNIPROTKB|P06628 [details] [associations]
symbol:spo0F "Sporulation initiation phosphotransferase F"
species:224308 "Bacillus subtilis subsp. subtilis str. 168"
[GO:0005515 "protein binding" evidence=IPI] InterPro:IPR001789
Pfam:PF00072 PROSITE:PS50110 SMART:SM00448 GO:GO:0005737
GO:GO:0006355 GO:GO:0035556 GO:GO:0046872 GO:GO:0030435
GO:GO:0016301 EMBL:AL009126 GenomeReviews:AL009126_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784
HOGENOM:HOG000034820 EMBL:Z49782 EMBL:X03497 EMBL:M11081
EMBL:M22039 PIR:A24737 RefSeq:NP_391594.1 PDB:1F51 PDB:1FSP
PDB:1NAT PDB:1PEY PDB:1PUX PDB:1SRR PDB:2FSP PDB:2FTK PDB:2JVI
PDB:2JVJ PDB:2JVK PDB:3Q15 PDBsum:1F51 PDBsum:1FSP PDBsum:1NAT
PDBsum:1PEY PDBsum:1PUX PDBsum:1SRR PDBsum:2FSP PDBsum:2FTK
PDBsum:2JVI PDBsum:2JVJ PDBsum:2JVK PDBsum:3Q15
ProteinModelPortal:P06628 SMR:P06628 DIP:DIP-58965N IntAct:P06628
EnsemblBacteria:EBBACT00000000330 GeneID:937041 KEGG:bsu:BSU37130
PATRIC:18979462 GenoList:BSU37130 KO:K02490 OMA:IRVIIMT
ProtClustDB:CLSK873695 BioCyc:BSUB:BSU37130-MONOMER
BindingDB:P06628 ChEMBL:CHEMBL3857 EvolutionaryTrace:P06628
Uniprot:P06628
Length = 124
Score = 98 (39.6 bits), Expect = 8.5e-05, P = 8.5e-05
Identities = 22/77 (28%), Positives = 47/77 (61%)
Query: 14 ALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVG-LEMDLPVIMMCAHGSKEVVMKGVTH 72
ALD++ K D+V+ D+ +P MDG ++L+ + ++ ++ VI+M A+G +++ +
Sbjct: 39 ALDIV--TKERPDLVLLDMKIPGMDGIEILKRMKVIDENIRVIIMTAYGELDMIQESKEL 96
Query: 73 DACDYLTKPVRIEELKN 89
A + KP I+E+++
Sbjct: 97 GALTHFAKPFDIDEIRD 113
>TIGR_CMR|APH_1099 [details] [associations]
symbol:APH_1099 "DNA-binding response regulator"
species:212042 "Anaplasma phagocytophilum HZ" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] InterPro:IPR001789
InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622
EMBL:CP000235 GenomeReviews:CP000235_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745
HOGENOM:HOG000034815 ProtClustDB:CLSK749538 RefSeq:YP_505647.1
ProteinModelPortal:Q2GJ04 STRING:Q2GJ04 GeneID:3930636
KEGG:aph:APH_1099 PATRIC:20950956 OMA:ETMASAQ
BioCyc:APHA212042:GHPM-1105-MONOMER Uniprot:Q2GJ04
Length = 276
Score = 116 (45.9 bits), Expect = 9.1e-05, P = 9.1e-05
Identities = 30/93 (32%), Positives = 53/93 (56%)
Query: 22 KNG-YDIVISDVHMPD-MDGFKLL-ELVGLEMDLPVIMMCAHGSKEVVMKGVTHDACDYL 78
KN YD+VI D+H P +DG+ +L +L + +PV+++ S +KG+ + A DY+
Sbjct: 43 KNDDYDVVILDIHFPGKIDGYDILVKLRESGIRVPVLILSCISSVAHKVKGLYYGADDYI 102
Query: 79 TKPVRIEELKNIWQHVVRKRKNERKDLEQSGSV 111
TKP EL + VVR+ + + + + G++
Sbjct: 103 TKPFHKSELLARIKAVVRRTRGHPESIVRVGNI 135
>TIGR_CMR|BA_2212 [details] [associations]
symbol:BA_2212 "DNA-binding response regulator"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] InterPro:IPR001789
InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034815 HSSP:Q9WYN0
RefSeq:NP_844604.1 RefSeq:YP_018854.1 RefSeq:YP_028319.1
ProteinModelPortal:Q81R46 DNASU:1085543
EnsemblBacteria:EBBACT00000012844 EnsemblBacteria:EBBACT00000018535
EnsemblBacteria:EBBACT00000022147 GeneID:1085543 GeneID:2815122
GeneID:2848498 KEGG:ban:BA_2212 KEGG:bar:GBAA_2212 KEGG:bat:BAS2056
OMA:IRATESK ProtClustDB:CLSK918052
BioCyc:BANT260799:GJAJ-2124-MONOMER
BioCyc:BANT261594:GJ7F-2201-MONOMER Uniprot:Q81R46
Length = 227
Score = 114 (45.2 bits), Expect = 9.4e-05, P = 9.4e-05
Identities = 24/67 (35%), Positives = 43/67 (64%)
Query: 23 NG-YDIVISDVHMPDMDGFKLLELVGLEMD-LPVIMMCAHGSKEVVMKGVTHDACDYLTK 80
NG +D+++ DV +P++ G ++L + L+ +P+I++ A S + G+ A DY+TK
Sbjct: 44 NGNWDLILLDVMLPNISGLEVLRRIRLKNAVIPIILLTARDSVVDKVSGLDQGASDYITK 103
Query: 81 PVRIEEL 87
P +IEEL
Sbjct: 104 PFQIEEL 110
>TIGR_CMR|GSU_1285 [details] [associations]
symbol:GSU_1285 "sensory box sensor histidine
kinase/response regulator" species:243231 "Geobacter sulfurreducens
PCA" [GO:0000155 "phosphorelay sensor kinase activity"
evidence=ISS] [GO:0000156 "phosphorelay response regulator
activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR000014
InterPro:IPR001789 InterPro:IPR003594 InterPro:IPR003661
InterPro:IPR004358 InterPro:IPR008207 InterPro:IPR009082
Pfam:PF00072 Pfam:PF00512 Pfam:PF02518 PRINTS:PR00344
PROSITE:PS50110 PROSITE:PS50112 SMART:SM00091 SMART:SM00387
SMART:SM00388 SMART:SM00448 InterPro:IPR005467 InterPro:IPR001610
GO:GO:0005524 GO:GO:0016020 GO:GO:0006355 GO:GO:0035556
GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0023014
SMART:SM00086 TIGRFAMs:TIGR00229 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 GO:GO:0000155 Gene3D:1.10.287.130
Gene3D:3.30.565.10 SUPFAM:SSF55874 SUPFAM:SSF47384 PROSITE:PS50109
SUPFAM:SSF47226 InterPro:IPR013656 Pfam:PF08448 RefSeq:NP_952338.1
PDB:2R78 PDBsum:2R78 ProteinModelPortal:Q74DN1 SMR:Q74DN1
GeneID:2688111 KEGG:gsu:GSU1285 PATRIC:22025341
HOGENOM:HOG000144300 OMA:AHTNSER
BioCyc:GSUL243231:GH27-1253-MONOMER EvolutionaryTrace:Q74DN1
Uniprot:Q74DN1
Length = 772
Score = 122 (48.0 bits), Expect = 9.5e-05, P = 9.5e-05
Identities = 40/139 (28%), Positives = 61/139 (43%)
Query: 22 KNGYDIVISDVHMPDMDGFKLLELV--GLEMD---LPVIMMCAH---GSKEVVMKGVTHD 73
+ +D+V+ DV MP MDGF+ + + G LP+I + A G +E+ ++
Sbjct: 587 REAFDLVLMDVQMPVMDGFEAMRAIRAGEAAGGARLPIIALTARALAGDRELCLEA---G 643
Query: 74 ACDYLTKPVRIEELKN-IWQHVVRKRKNERKDLEQSGSVEGGAQQPKPFEESDDSYSVNE 132
A DYL KPV EL+ I +H R+ K E G F E D +
Sbjct: 644 ADDYLAKPVNFSELRRVISRHCCRESKPSALSAENRPDAAGATPPAGTFGELMDELGASV 703
Query: 133 GTSNSRKDEEEEAEKRLKK 151
G + +D E + LK+
Sbjct: 704 GDRD--EDAVERCTRMLKR 720
>TIGR_CMR|SO_4477 [details] [associations]
symbol:SO_4477 "transcriptional regulatory protein CpxR"
species:211586 "Shewanella oneidensis MR-1" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486
PROSITE:PS50110 SMART:SM00448 SMART:SM00862 GO:GO:0006355
GO:GO:0035556 GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0005622 EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034819 KO:K07662
HSSP:P08402 RefSeq:NP_719998.1 ProteinModelPortal:Q8E918
GeneID:1172072 KEGG:son:SO_4477 PATRIC:23528605 OMA:TTQEIHA
ProtClustDB:CLSK907666 Uniprot:Q8E918
Length = 228
Score = 114 (45.2 bits), Expect = 9.5e-05, P = 9.5e-05
Identities = 31/114 (27%), Positives = 59/114 (51%)
Query: 2 GFSVTKCNRAEIALDM-LRTNKNGYDIVISDVHMPDMDGFKLLELVGLEMDLPVIMMCAH 60
GF +T + L++ L T+ YD+++ DV +P ++GF++L + PV+M+ A
Sbjct: 25 GFKLTLAYDGKQGLELALATD---YDLILLDVMLPKLNGFEVLRALRQHKQTPVLMLTAR 81
Query: 61 GSKEVVMKGVTHDACDYLTKPVRIEELKNIWQHVVRKRKNERKDLEQSGSVEGG 114
G + + G+ A DYL KP EL + ++R+ +++ + + E G
Sbjct: 82 GDEIDRVVGLEIGADDYLPKPFNDRELIARIRAIIRRSHLTAQEIHATPAQEFG 135
>UNIPROTKB|E1WEB4 [details] [associations]
symbol:cpxR "Two-component response regulatory protein"
species:216597 "Salmonella enterica subsp. enterica serovar
Typhimurium str. SL1344" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072
Pfam:PF00486 PROSITE:PS50110 SMART:SM00448 SMART:SM00862
GO:GO:0006355 GO:GO:0035556 GO:GO:0003677 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 OMA:YQTPVIM EMBL:FQ312003 GenomeReviews:FQ312003_GR
RefSeq:YP_005183876.1 ProteinModelPortal:E1WEB4 IntAct:E1WEB4
PRIDE:E1WEB4 GeneID:11767742 KEGG:sey:SL1344_4008 PATRIC:43194339
Uniprot:E1WEB4
Length = 232
Score = 114 (45.2 bits), Expect = 0.00010, P = 0.00010
Identities = 34/110 (30%), Positives = 57/110 (51%)
Query: 2 GFSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVGLEMDLPVIMMCAHG 61
GF+V + E AL++L + D+++ DV MP +G L+ + PVIM+ A G
Sbjct: 25 GFNVLVAHDGEQALELL---DDSIDLLLLDVMMPKKNGIDTLKALRQTHQTPVIMLTARG 81
Query: 62 SKEVVMKGVTHDACDYLTKPVRIEELKNIWQHVVRKRK-NERKDLEQSGS 110
S+ + G+ A DYL KP EL + ++R+ +E++ +GS
Sbjct: 82 SELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWSEQQQSSDNGS 131
>TIGR_CMR|BA_1877 [details] [associations]
symbol:BA_1877 "DNA-binding response regulator"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0006355 GO:GO:0035556 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034819
RefSeq:NP_844293.1 RefSeq:YP_018518.1 RefSeq:YP_028003.1
HSSP:Q9WXY0 ProteinModelPortal:Q81S03 DNASU:1087421
EnsemblBacteria:EBBACT00000008114 EnsemblBacteria:EBBACT00000014243
EnsemblBacteria:EBBACT00000023021 GeneID:1087421 GeneID:2817591
GeneID:2853065 KEGG:ban:BA_1877 KEGG:bar:GBAA_1877 KEGG:bat:BAS1739
OMA:ANLMQEG ProtClustDB:CLSK584084
BioCyc:BANT260799:GJAJ-1808-MONOMER
BioCyc:BANT261594:GJ7F-1884-MONOMER Uniprot:Q81S03
Length = 232
Score = 114 (45.2 bits), Expect = 0.00010, P = 0.00010
Identities = 27/80 (33%), Positives = 40/80 (50%)
Query: 2 GFSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVGLEMDLPVIMMCAHG 61
GF V E AL+++ N N + I D+ MP MDG +L + + LP+I + A
Sbjct: 27 GFKVFSAYNGEEALEII--NNNSIQLAILDIMMPQMDGIELCRRIREKHSLPIIFLSAKS 84
Query: 62 SKEVVMKGVTHDACDYLTKP 81
S + G + A DY+ KP
Sbjct: 85 SDVDKVVGFSTGADDYIVKP 104
>TIGR_CMR|BA_5106 [details] [associations]
symbol:BA_5106 "DNA-binding response regulator"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0006355 GO:GO:0035556 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034819 HSSP:P08402
RefSeq:NP_847292.1 RefSeq:YP_030989.1 RefSeq:YP_052651.1
ProteinModelPortal:Q81K99 DNASU:1084409
EnsemblBacteria:EBBACT00000012632 EnsemblBacteria:EBBACT00000014721
EnsemblBacteria:EBBACT00000022679 GeneID:1084409 GeneID:2821239
GeneID:2851460 KEGG:ban:BA_5106 KEGG:bar:GBAA_5106 KEGG:bat:BAS4745
OMA:VVINPER ProtClustDB:CLSK873134
BioCyc:BANT260799:GJAJ-4799-MONOMER
BioCyc:BANT261594:GJ7F-4958-MONOMER Uniprot:Q81K99
Length = 232
Score = 114 (45.2 bits), Expect = 0.00010, P = 0.00010
Identities = 34/129 (26%), Positives = 61/129 (47%)
Query: 2 GFSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVGLEMDLPVIMMCAHG 61
G+ V K E A+ ++ T D+V+ D+ MP MDG+++ + + +P+I + A
Sbjct: 27 GYHVVKAADGEEAIHIIETQP--IDLVVLDIMMPKMDGYEVTRQIRAKHHMPIIFLSAKT 84
Query: 62 SKEVVMKGVTHDACDYLTKPVR-IEELKNIWQHVVR-KRKNERKDLEQSGSVEGGAQQPK 119
S + G+ A DY+TKP IE + + + R N+ K E +++ G
Sbjct: 85 SDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRRFLTLNQPKVAENKSALQVGGVTID 144
Query: 120 PFEESDDSY 128
P + + Y
Sbjct: 145 PERRTVNVY 153
>TIGR_CMR|GSU_0470 [details] [associations]
symbol:GSU_0470 "sigma-54 dependent response regulator"
species:243231 "Geobacter sulfurreducens PCA" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR001789 InterPro:IPR002078 InterPro:IPR002197
InterPro:IPR003593 InterPro:IPR009057 Pfam:PF00072 Pfam:PF00158
Pfam:PF02954 PRINTS:PR01590 PROSITE:PS50045 PROSITE:PS50110
SMART:SM00382 SMART:SM00448 GO:GO:0005524 GO:GO:0035556
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 GO:GO:0005622
Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000058489
InterPro:IPR025662 InterPro:IPR025943 InterPro:IPR025944
PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688 HSSP:P06143
RefSeq:NP_951529.1 ProteinModelPortal:Q74FY2 GeneID:2686241
KEGG:gsu:GSU0470 PATRIC:22023688 OMA:QYRLREY ProtClustDB:CLSK827855
BioCyc:GSUL243231:GH27-461-MONOMER Uniprot:Q74FY2
Length = 453
Score = 119 (46.9 bits), Expect = 0.00010, P = 0.00010
Identities = 32/107 (29%), Positives = 58/107 (54%)
Query: 2 GFSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVGLEMDLP--VIMMCA 59
G+ + + E AL +LR + +D+V+SD+ MP + G +LL + D P +++ A
Sbjct: 26 GYDIREAADGEEALALLR--RESFDLVLSDLRMPGIGGLELLR-ASRDDDYPPAFVILTA 82
Query: 60 HGSKEVVMKGVTHDACDYLTKPVRIEE-LKNIWQHVVRKRKNERKDL 105
G+ E + V A D+LTKP++ + L+ + V+ + ER+ L
Sbjct: 83 FGTIEEAVAAVKEGAADFLTKPLKDPDTLRVLVGRVLSGKSREREYL 129
>UNIPROTKB|Q50806 [details] [associations]
symbol:trcR "Response regulator homolog TrcR" species:1773
"Mycobacterium tuberculosis" [GO:0003677 "DNA binding"
evidence=IDA] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IMP] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IDA] InterPro:IPR001789
InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0045892 GO:GO:0045893
GenomeReviews:AL123456_GR GO:GO:0035556 GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034815 HSSP:Q9WYN0
EMBL:AL123456 EMBL:U88959 PIR:D70624 RefSeq:NP_215549.1
RefSeq:YP_006514396.1 SMR:Q50806 EnsemblBacteria:EBMYCT00000001946
GeneID:13319598 GeneID:887957 KEGG:mtu:Rv1033c KEGG:mtv:RVBD_1033c
PATRIC:18150824 TubercuList:Rv1033c KO:K07672 OMA:IAHNGRE
ProtClustDB:CLSK790905 Uniprot:Q50806
Length = 257
Score = 115 (45.5 bits), Expect = 0.00010, P = 0.00010
Identities = 27/90 (30%), Positives = 52/90 (57%)
Query: 21 NKNGYDIVISDVHMPDMDGFKLLELVGLEMDL--PVIMMCAHGSKEVVMKGVTHDACDYL 78
+K G D+++ D+ +PD+DG ++L V E D+ P + + A S + G+T A DY+
Sbjct: 72 DKVGPDVLVLDIMLPDVDGLEILRRVR-ESDVYTPTLFLTARDSVMDRVTGLTSGADDYM 130
Query: 79 TKPVRIEELKNIWQHVVRKRKNERKDLEQS 108
TKP +EEL + ++R+ + + +++
Sbjct: 131 TKPFSLEELVARLRGLLRRSSHLERPADEA 160
>TIGR_CMR|SPO_2575 [details] [associations]
symbol:SPO_2575 "DNA-binding response regulator, LuxR
family" species:246200 "Ruegeria pomeroyi DSS-3" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR000792 InterPro:IPR001789
InterPro:IPR016032 Pfam:PF00072 Pfam:PF00196 PRINTS:PR00038
PROSITE:PS00622 PROSITE:PS50043 PROSITE:PS50110 SMART:SM00421
SMART:SM00448 GO:GO:0035556 EMBL:CP000031 GenomeReviews:CP000031_GR
GO:GO:0043565 GO:GO:0003700 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0006351 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 SUPFAM:SSF46894 HOGENOM:HOG000034813
RefSeq:YP_167788.1 ProteinModelPortal:Q5LQB7 GeneID:3194300
KEGG:sil:SPO2575 PATRIC:23378553 KO:K02479 OMA:HPMVAEG
ProtClustDB:CLSK933904 Uniprot:Q5LQB7
Length = 216
Score = 113 (44.8 bits), Expect = 0.00010, P = 0.00010
Identities = 40/155 (25%), Positives = 77/155 (49%)
Query: 26 DIVISDVHMPDMDGFKLLELVGLEM-DLPVIMMCAHGSKEVVMKGVTHDACDYLTKPVRI 84
D+++ D++MP + G E++ +M D ++++ H S E + ++H A Y+ K V
Sbjct: 53 DVILMDLNMPGLGGLGATEIIREQMPDTRILILSMHDSPEYISTALSHGAMGYVLKDVPT 112
Query: 85 EELKNIWQHVVRKRKNERKDLEQSGSVEGGAQQPKPFEESDDSYSVNEGTSNSRKDE-EE 143
EE+K V+R ER +G+ G+ +PK EE+ ++ + E T + + +
Sbjct: 113 EEIKQAIDAVMR---GERYLC--TGAK--GSLEPKEGEEAREALTGREQTILLQLAQGKS 165
Query: 144 EAEKRLKKPRLVWSVELHQQFVSAVKELGFDK-AG 177
E + V +VE H++ + ++LG AG
Sbjct: 166 NKEVAIALDISVRTVETHRKNIK--RKLGISSTAG 198
>TIGR_CMR|BA_1660 [details] [associations]
symbol:BA_1660 "chemotaxis response regulator"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0006935 "chemotaxis" evidence=ISS] InterPro:IPR001789
Pfam:PF00072 PROSITE:PS50110 SMART:SM00448 GO:GO:0006355
GO:GO:0035556 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413
OMA:PFQAPKV RefSeq:NP_844107.1 RefSeq:YP_018295.1
RefSeq:YP_027808.1 HSSP:Q56312 ProteinModelPortal:Q81SI8 SMR:Q81SI8
DNASU:1083740 EnsemblBacteria:EBBACT00000009828
EnsemblBacteria:EBBACT00000015597 EnsemblBacteria:EBBACT00000020958
GeneID:1083740 GeneID:2817294 GeneID:2851539 KEGG:ban:BA_1660
KEGG:bar:GBAA_1660 KEGG:bat:BAS1541 ProtClustDB:CLSK916318
BioCyc:BANT260799:GJAJ-1613-MONOMER
BioCyc:BANT261594:GJ7F-1681-MONOMER Uniprot:Q81SI8
Length = 122
Score = 97 (39.2 bits), Expect = 0.00011, P = 0.00011
Identities = 19/63 (30%), Positives = 37/63 (58%)
Query: 26 DIVISDVHMPDMDGFKLL-ELVGLEMDLPVIMMCAHGSKEVVMKGVTHDACDYLTKPVRI 84
DIV D+ MP+MDG + L E++ ++ V++ A G + +V+ + A D++ KP +
Sbjct: 50 DIVTLDITMPEMDGLEALKEIIKIDASAKVVICSAMGQQGMVLDAIKGGAKDFIVKPFQA 109
Query: 85 EEL 87
+ +
Sbjct: 110 DRV 112
>TAIR|locus:2011286 [details] [associations]
symbol:ARR7 "response regulator 7" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA;TAS] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0009736 "cytokinin mediated
signaling pathway" evidence=RCA;IMP;TAS] [GO:0019827 "stem cell
maintenance" evidence=IMP] [GO:0009735 "response to cytokinin
stimulus" evidence=IEP] [GO:0005515 "protein binding" evidence=IPI]
[GO:0010200 "response to chitin" evidence=IEP] [GO:0007623
"circadian rhythm" evidence=RCA] [GO:0010029 "regulation of seed
germination" evidence=RCA] [GO:0031537 "regulation of anthocyanin
metabolic process" evidence=RCA] [GO:0048831 "regulation of shoot
system development" evidence=RCA] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0006355 GO:GO:0006351
GO:GO:0010200 GO:GO:0009736 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K14492
ProtClustDB:CLSN2914197 eggNOG:COG3706 EMBL:AB008490 EMBL:AC068602
IPI:IPI00536268 PIR:T50854 RefSeq:NP_173339.1 UniGene:At.238
ProteinModelPortal:Q9ZWS7 SMR:Q9ZWS7 IntAct:Q9ZWS7 STRING:Q9ZWS7
EnsemblPlants:AT1G19050.1 GeneID:838487 KEGG:ath:AT1G19050
GeneFarm:4124 TAIR:At1g19050 InParanoid:Q9ZWS7 OMA:LRISSCK
PhylomeDB:Q9ZWS7 Genevestigator:Q9ZWS7 GermOnline:AT1G19050
GO:GO:0019827 Uniprot:Q9ZWS7
Length = 206
Score = 112 (44.5 bits), Expect = 0.00012, P = 0.00012
Identities = 28/122 (22%), Positives = 59/122 (48%)
Query: 26 DIVISDVHMPDMDGFKLLELV---GLEMDLPVIMMCAHGSKEVVMKGVTHDACDYLTKPV 82
+++++D MP + G+ LL+ + ++PV++M + + + + A ++L KPV
Sbjct: 80 NLIVTDYSMPGLSGYDLLKKIKESSAFREVPVVIMSSENILPRIQECLKEGAEEFLLKPV 139
Query: 83 RIEELKNIWQHVVRKRKNERKDLEQSGSVEGGAQQPKPFEESDDSYSVNEGTSNSRKDEE 142
++ ++K I Q ++R E K L S + DD+ S+ + + + R E
Sbjct: 140 KLADVKRIKQLIMRNEAEECKILSHSNKRKLQEDSDTSSSSHDDT-SIKDSSCSKRMKSE 198
Query: 143 EE 144
E
Sbjct: 199 SE 200
>TIGR_CMR|SO_4388 [details] [associations]
symbol:SO_4388 "DNA-binding response regulator"
species:211586 "Shewanella oneidensis MR-1" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] InterPro:IPR001789
InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622
EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034819 HSSP:P08402
RefSeq:NP_719912.1 ProteinModelPortal:Q8E997 GeneID:1171990
KEGG:son:SO_4388 PATRIC:23528433 ProtClustDB:CLSK889389
Uniprot:Q8E997
Length = 227
Score = 113 (44.8 bits), Expect = 0.00012, P = 0.00012
Identities = 31/109 (28%), Positives = 58/109 (53%)
Query: 2 GFSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLL-ELVGLEMDLPVIMMCAH 60
G+SV + ++AL L+ + D +I D+ MP++DG+ + E+ + PVI + A
Sbjct: 24 GYSVLLADNGKVAL--LKYQQEQPDFIILDIMMPELDGYSVCKEIRKHDEQTPVIFLSAK 81
Query: 61 GSKEVVMKGVTHDACDYLTKPVRIEELKNIWQHVVRK-RKNERKDLEQS 108
G + + G+ A DY+ KP I E++ + + R+ K ++ +QS
Sbjct: 82 GEELDKVLGLELGADDYINKPFGIHEVRARIKTIARRCLKAKQNSPDQS 130
>TIGR_CMR|SPO_3426 [details] [associations]
symbol:SPO_3426 "DNA-binding response regulator"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0000156 "phosphorelay
response regulator activity" evidence=ISS] [GO:0000160
"phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486
PROSITE:PS50110 SMART:SM00448 SMART:SM00862 GO:GO:0006355
GO:GO:0035556 EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034819
RefSeq:YP_168622.1 ProteinModelPortal:Q5LMY6 GeneID:3195773
KEGG:sil:SPO3426 PATRIC:23380311 OMA:THEQSED
ProtClustDB:CLSK2392532 Uniprot:Q5LMY6
Length = 228
Score = 113 (44.8 bits), Expect = 0.00013, P = 0.00013
Identities = 34/122 (27%), Positives = 55/122 (45%)
Query: 19 RTNKNGYDIVISDVHMPDMDGFKLLELVGLE-MDLPVIMMCAHGSKEVVMKGVTHDACDY 77
RT + YD+VI DV +PD DG +L L+ + + P+IM+ H S + G+ A DY
Sbjct: 44 RTKEAIYDLVILDVGLPDTDGRELCRLMRKQGVKSPIIMLTGHDSDADTILGLDAGANDY 103
Query: 78 LTKPVRIEELKNIWQHVVRKRKNERKDLEQSGSVEGGAQQPKPFEESDDSYSVNEGTSNS 137
++KP + L + +R+ + + Q G E D + E +N
Sbjct: 104 VSKPFKFPVLLARIRSQLRQHEQSEDAVFQLGPYTFKPAMKMLITEDDRKIRLTEKETNI 163
Query: 138 RK 139
K
Sbjct: 164 LK 165
>DICTYBASE|DDB_G0284331 [details] [associations]
symbol:regA "response regulator receiver
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0030587 "sorocarp development" evidence=IMP] [GO:0051281
"positive regulation of release of sequestered calcium ion into
cytosol" evidence=IMP] [GO:0051279 "regulation of release of
sequestered calcium ion into cytosol" evidence=IMP] [GO:0046058
"cAMP metabolic process" evidence=IMP] [GO:0031276 "negative
regulation of lateral pseudopodium assembly" evidence=IMP]
[GO:0004115 "3',5'-cyclic-AMP phosphodiesterase activity"
evidence=IDA;IMP] [GO:0005622 "intracellular" evidence=TAS]
[GO:0006970 "response to osmotic stress" evidence=TAS] [GO:0030435
"sporulation resulting in formation of a cellular spore"
evidence=IMP] [GO:0007275 "multicellular organismal development"
evidence=IMP] [GO:0047555 "3',5'-cyclic-GMP phosphodiesterase
activity" evidence=IDA] [GO:0006198 "cAMP catabolic process"
evidence=IDA] [GO:0035556 "intracellular signal transduction"
evidence=IEA] [GO:0008081 "phosphoric diester hydrolase activity"
evidence=IEA] [GO:0007165 "signal transduction" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0004114 "3',5'-cyclic-nucleotide
phosphodiesterase activity" evidence=IEA] [GO:0003824 "catalytic
activity" evidence=IEA] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0000156 "phosphorelay
response regulator activity" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0030552 "cAMP binding" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
InterPro:IPR001789 InterPro:IPR002073 InterPro:IPR003607
InterPro:IPR023088 InterPro:IPR023174 Pfam:PF00072 Pfam:PF00233
PRINTS:PR00387 PROSITE:PS00126 PROSITE:PS50110 SMART:SM00448
SMART:SM00471 dictyBase:DDB_G0284331 GO:GO:0005829
GenomeReviews:CM000153_GR GO:GO:0006355 GO:GO:0035556 GO:GO:0046872
GO:GO:0030435 GO:GO:0030587 GO:GO:0005622 GO:GO:0006970
GO:GO:0051281 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
eggNOG:COG3706 EMBL:AAFI02000064 GO:GO:0030552 GO:GO:0031276
GO:GO:0004115 GO:GO:0006198 Gene3D:1.10.1300.10 EMBL:U60170
EMBL:AJ005398 RefSeq:XP_638612.1 ProteinModelPortal:Q23917
STRING:Q23917 EnsemblProtists:DDB0191479 GeneID:8624583
KEGG:ddi:DDB_G0284331 OMA:SHYETIC ProtClustDB:CLSZ2728943
Uniprot:Q23917
Length = 793
Score = 121 (47.7 bits), Expect = 0.00013, P = 0.00013
Identities = 39/145 (26%), Positives = 66/145 (45%)
Query: 3 FSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVG---LEMDLPVIMMCA 59
++VT EIA + + + YD+V++DV MP + GF LL+ + + +PVI+M
Sbjct: 184 YNVTLVPNGEIAWEYINKGQQKYDLVLTDVMMPHITGFDLLQRINDHPVHRHIPVILMSG 243
Query: 60 HG-SKEVVMKGVTHDACDYLTKPVRIEELKN----IWQHVVRKRKNERKDLEQSGSVEGG 114
+ + D+LTKP+ E LK + Q + ++RK E + E G
Sbjct: 244 TAVDYKYANDTIKIGGQDFLTKPIAKELLKKKIDTVLQSIWQRRKEEEYKATLAQEREKG 303
Query: 115 AQQPKPFEESDDSYSVNEGTSNSRK 139
+ K E + + + E T K
Sbjct: 304 NKLAKEMELKE--HEIEELTKKVSK 326
>TIGR_CMR|GSU_2041 [details] [associations]
symbol:GSU_2041 "sigma-54 dependent DNA-binding response
regulator" species:243231 "Geobacter sulfurreducens PCA"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PRINTS:PR01590
PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382 SMART:SM00448
GO:GO:0005524 GO:GO:0035556 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000058489 KO:K07714
InterPro:IPR025662 InterPro:IPR025943 InterPro:IPR025944
PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688 HSSP:P06143
RefSeq:NP_953090.1 ProteinModelPortal:Q74BK0 GeneID:2687998
KEGG:gsu:GSU2041 PATRIC:22026943 OMA:HMLQVML ProtClustDB:CLSK828703
BioCyc:GSUL243231:GH27-1944-MONOMER Uniprot:Q74BK0
Length = 455
Score = 118 (46.6 bits), Expect = 0.00013, P = 0.00013
Identities = 33/110 (30%), Positives = 57/110 (51%)
Query: 2 GFSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVGLEMDLP--VIMMCA 59
G+ + E AL + + YD ++ D+ MP MDG L + +LP VIMM A
Sbjct: 26 GYEAVEAADGEAAL--AQASAAAYDFILCDIRMPIMDGVGFLRTFQ-KAELPGTVIMMSA 82
Query: 60 HGSKEVVMKGVTHDACDYLTKPVRIEELKNIWQHVV-RKR-KNERKDLEQ 107
+G+ + + + A DY++KP + +E+ + + R+R KNE + L +
Sbjct: 83 YGTVDAAIACMKEGAYDYVSKPFKNDEILLVLRKAEERERLKNENRRLRE 132
>UNIPROTKB|Q8ECK1 [details] [associations]
symbol:dctD "C4-dicarboxylate-responsive two component
Sigma54-dependent signal transduction system response regulator
DctD" species:211586 "Shewanella oneidensis MR-1" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0015740 "C4-dicarboxylate transport" evidence=ISS] [GO:0035556
"intracellular signal transduction" evidence=ISS]
InterPro:IPR001789 InterPro:IPR002078 InterPro:IPR002197
InterPro:IPR003593 InterPro:IPR009057 Pfam:PF00072 Pfam:PF00158
Pfam:PF02954 PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382
SMART:SM00448 GO:GO:0005524 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689
EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000058489
InterPro:IPR025662 InterPro:IPR025943 InterPro:IPR025944
PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688 GO:GO:0015740
KO:K10126 ProtClustDB:CLSK907021 RefSeq:NP_718697.1 HSSP:P13632
ProteinModelPortal:Q8ECK1 GeneID:1170827 KEGG:son:SO_3138
PATRIC:23525948 OMA:RMASARY Uniprot:Q8ECK1
Length = 459
Score = 118 (46.6 bits), Expect = 0.00014, P = 0.00014
Identities = 30/94 (31%), Positives = 53/94 (56%)
Query: 27 IVISDVHMPDMDGFKLLELVG-LEMDLPVIMMCAHGSKEVVMKGVTHDACDYLTKPVRIE 85
+VISDV+MP +DG L++ + + DLPV+++ G + + + A D+L KP E
Sbjct: 56 VVISDVNMPQLDGISLMQQIREQDADLPVVLLTGFGDIAMAVNALKQGAYDFLEKPFNNE 115
Query: 86 ELKNIWQHVVRKR----KNER--KDLEQSGSVEG 113
+ ++ + + KR +N + K+LE S +V G
Sbjct: 116 HMLDVVKRALDKRSLTLENRKLKKELE-SHNVPG 148
>TIGR_CMR|SO_3138 [details] [associations]
symbol:SO_3138 "C4-dicarboxylate transport transcriptional
regulatory protein" species:211586 "Shewanella oneidensis MR-1"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] [GO:0015740 "C4-dicarboxylate transport"
evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PROSITE:PS50045
PROSITE:PS50110 SMART:SM00382 SMART:SM00448 GO:GO:0005524
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 GO:GO:0005622
Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000058489
InterPro:IPR025662 InterPro:IPR025943 InterPro:IPR025944
PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688 GO:GO:0015740
KO:K10126 ProtClustDB:CLSK907021 RefSeq:NP_718697.1 HSSP:P13632
ProteinModelPortal:Q8ECK1 GeneID:1170827 KEGG:son:SO_3138
PATRIC:23525948 OMA:RMASARY Uniprot:Q8ECK1
Length = 459
Score = 118 (46.6 bits), Expect = 0.00014, P = 0.00014
Identities = 30/94 (31%), Positives = 53/94 (56%)
Query: 27 IVISDVHMPDMDGFKLLELVG-LEMDLPVIMMCAHGSKEVVMKGVTHDACDYLTKPVRIE 85
+VISDV+MP +DG L++ + + DLPV+++ G + + + A D+L KP E
Sbjct: 56 VVISDVNMPQLDGISLMQQIREQDADLPVVLLTGFGDIAMAVNALKQGAYDFLEKPFNNE 115
Query: 86 ELKNIWQHVVRKR----KNER--KDLEQSGSVEG 113
+ ++ + + KR +N + K+LE S +V G
Sbjct: 116 HMLDVVKRALDKRSLTLENRKLKKELE-SHNVPG 148
>TIGR_CMR|BA_4777 [details] [associations]
symbol:BA_4777 "DNA-binding response regulator"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] InterPro:IPR001789
InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034819 HSSP:P08402
RefSeq:NP_846982.1 RefSeq:YP_021423.1 RefSeq:YP_030680.1
ProteinModelPortal:Q81L55 DNASU:1083888
EnsemblBacteria:EBBACT00000012704 EnsemblBacteria:EBBACT00000017584
EnsemblBacteria:EBBACT00000020354 GeneID:1083888 GeneID:2815717
GeneID:2851624 KEGG:ban:BA_4777 KEGG:bar:GBAA_4777 KEGG:bat:BAS4433
OMA:DISIQEM ProtClustDB:CLSK917419
BioCyc:BANT260799:GJAJ-4490-MONOMER
BioCyc:BANT261594:GJ7F-4640-MONOMER Uniprot:Q81L55
Length = 230
Score = 112 (44.5 bits), Expect = 0.00017, P = 0.00017
Identities = 26/86 (30%), Positives = 46/86 (53%)
Query: 2 GFSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVGLEMDLPVIMMCAHG 61
GF VT + E +D K +D++I D+ MP +DG +++ ++ + +P++MM A
Sbjct: 26 GFQVTIASDGEEGVDTYL--KGSFDLIILDIMMPKLDGLEVVRIIREKSAVPILMMSAKD 83
Query: 62 SKEVVMKGVTHDACDYLTKPVRIEEL 87
+ G+ A DY+ KP + EL
Sbjct: 84 TDVDKAVGLGLGADDYICKPFSMIEL 109
>UNIPROTKB|Q8EF67 [details] [associations]
symbol:cheY "Chemotaxis signal transduction system response
regulator CheY" species:211586 "Shewanella oneidensis MR-1"
[GO:0004871 "signal transducer activity" evidence=ISS] [GO:0006935
"chemotaxis" evidence=ISS] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
GO:GO:0005622 GO:GO:0006935 GO:GO:0004871 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413 HSSP:P06143
OMA:FDVTEAC RefSeq:NP_717723.1 ProteinModelPortal:Q8EF67
GeneID:1169863 KEGG:son:SO_2120 PATRIC:23523858
ProtClustDB:CLSK906601 Uniprot:Q8EF67
Length = 121
Score = 95 (38.5 bits), Expect = 0.00018, P = 0.00018
Identities = 26/96 (27%), Positives = 48/96 (50%)
Query: 3 FSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLE-LVGLE--MDLPVIMMCA 59
+ VT ALD+ + + +D +++D +MP MDG L++ L G+ M P+IM+
Sbjct: 27 YQVTLAKDGREALDLCSSQR--FDFILTDQNMPRMDGLTLIKSLRGMSAFMRTPIIMLTT 84
Query: 60 HGSKEVVMKGVTHDACDYLTKPVRIEELKNIWQHVV 95
++ +G A ++ KP ++L I V+
Sbjct: 85 EAGDDMKAQGKAVGATGWMVKPFDPQKLLAITAKVL 120
>UNIPROTKB|Q9WYT9 [details] [associations]
symbol:TM_0468 "Response regulator" species:243274
"Thermotoga maritima MSB8" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 GO:GO:0006355 GO:GO:0035556 GO:GO:0046872
GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
EMBL:AE000512 GenomeReviews:AE000512_GR KO:K02485 EMBL:AGIJ01000001
PIR:D72374 RefSeq:NP_228278.1 PDB:3DGE PDB:3DGF PDB:3GL9
PDBsum:3DGE PDBsum:3DGF PDBsum:3GL9 IntAct:Q9WYT9 GeneID:897499
KEGG:tma:TM0468 PATRIC:23935833 OMA:WKRIPVI ProtClustDB:CLSK875163
EvolutionaryTrace:Q9WYT9 Uniprot:Q9WYT9
Length = 122
Score = 95 (38.5 bits), Expect = 0.00018, P = 0.00018
Identities = 28/96 (29%), Positives = 53/96 (55%)
Query: 2 GFSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVGLEMD---LPVIMMC 58
G+ V + +IAL+ L ++ D+++ D+ MP MDGF +L+ + + + +PVI++
Sbjct: 26 GYEVIEAENGQIALEKL--SEFTPDLIVLDIMMPVMDGFTVLKKLQEKEEWKRIPVIVLT 83
Query: 59 AHGSKEVVMKGVTHDACDYLTKPVR----IEELKNI 90
A G +E ++ A + KP IEE+K++
Sbjct: 84 AKGGEEDESLALSLGARKVMRKPFSPSQFIEEVKHL 119
>TIGR_CMR|SO_2120 [details] [associations]
symbol:SO_2120 "chemotaxis protein CheY" species:211586
"Shewanella oneidensis MR-1" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 GO:GO:0006935
GO:GO:0004871 EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413
HSSP:P06143 OMA:FDVTEAC RefSeq:NP_717723.1
ProteinModelPortal:Q8EF67 GeneID:1169863 KEGG:son:SO_2120
PATRIC:23523858 ProtClustDB:CLSK906601 Uniprot:Q8EF67
Length = 121
Score = 95 (38.5 bits), Expect = 0.00018, P = 0.00018
Identities = 26/96 (27%), Positives = 48/96 (50%)
Query: 3 FSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLE-LVGLE--MDLPVIMMCA 59
+ VT ALD+ + + +D +++D +MP MDG L++ L G+ M P+IM+
Sbjct: 27 YQVTLAKDGREALDLCSSQR--FDFILTDQNMPRMDGLTLIKSLRGMSAFMRTPIIMLTT 84
Query: 60 HGSKEVVMKGVTHDACDYLTKPVRIEELKNIWQHVV 95
++ +G A ++ KP ++L I V+
Sbjct: 85 EAGDDMKAQGKAVGATGWMVKPFDPQKLLAITAKVL 120
>TIGR_CMR|GSU_3418 [details] [associations]
symbol:GSU_3418 "sigma-54 dependent DNA-binding response
regulator" species:243231 "Geobacter sulfurreducens PCA"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PRINTS:PR01590
PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382 SMART:SM00448
GO:GO:0005524 GO:GO:0035556 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 InterPro:IPR025662
InterPro:IPR025943 InterPro:IPR025944 PROSITE:PS00675
PROSITE:PS00676 PROSITE:PS00688 HOGENOM:HOG000058487
RefSeq:NP_954458.1 ProteinModelPortal:Q746V0 GeneID:2686607
KEGG:gsu:GSU3418 PATRIC:22029693 OMA:LSIYSFP
ProtClustDB:CLSK2522262 BioCyc:GSUL243231:GH27-3392-MONOMER
Uniprot:Q746V0
Length = 490
Score = 117 (46.2 bits), Expect = 0.00020, P = 0.00020
Identities = 33/123 (26%), Positives = 62/123 (50%)
Query: 4 SVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVGLEM-DLPVIMMCAHGS 62
++ KC+ + +D+LR + +++ D+ MP G LL+++G E D+PVI++
Sbjct: 36 NIIKCSDSRQVMDILRETE--VSLILLDLTMPYFSGTDLLQMIGQEYPDIPVIVLSGLNQ 93
Query: 63 KEVVMKGVTHDACDYLTKPVRIEELKNIWQHV--VRKRKNERKDLEQSGSVEGGAQQPKP 120
E ++ + A DY K V E L Q +++ +NE + L+ + +E P+
Sbjct: 94 VETAVRCMQLGAFDYYVKTVEKERLITGIQRAFSMQEMRNENRSLK-ARFLEDHLAHPEA 152
Query: 121 FEE 123
F E
Sbjct: 153 FAE 155
>TIGR_CMR|BA_0996 [details] [associations]
symbol:BA_0996 "sensor histidine kinase/response regulator"
species:198094 "Bacillus anthracis str. Ames" [GO:0000155
"phosphorelay sensor kinase activity" evidence=ISS] [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR003018 InterPro:IPR001789 InterPro:IPR003594
InterPro:IPR003660 InterPro:IPR003661 InterPro:IPR004358
InterPro:IPR009082 Pfam:PF00072 Pfam:PF00512 Pfam:PF00672
Pfam:PF02518 Pfam:PF13185 PRINTS:PR00344 PROSITE:PS50110
PROSITE:PS50885 SMART:SM00065 SMART:SM00304 SMART:SM00387
SMART:SM00388 SMART:SM00448 InterPro:IPR005467 GO:GO:0016021
GO:GO:0005524 GO:GO:0006355 GO:GO:0035556 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0005622
GO:GO:0023014 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
GO:GO:0000155 Gene3D:1.10.287.130 Gene3D:3.30.565.10
SUPFAM:SSF55874 SUPFAM:SSF47384 PROSITE:PS50109 KO:K03407
HSSP:P52934 RefSeq:NP_843497.1 RefSeq:YP_017624.1
RefSeq:YP_027206.1 ProteinModelPortal:Q81U88 DNASU:1088076
EnsemblBacteria:EBBACT00000011936 EnsemblBacteria:EBBACT00000016656
EnsemblBacteria:EBBACT00000023286 GeneID:1088076 GeneID:2814798
GeneID:2849014 KEGG:ban:BA_0996 KEGG:bar:GBAA_0996 KEGG:bat:BAS0932
HOGENOM:HOG000084747 OMA:TNNVFQE ProtClustDB:CLSK916050
BioCyc:BANT260799:GJAJ-1010-MONOMER
BioCyc:BANT261594:GJ7F-1055-MONOMER InterPro:IPR007891 Pfam:PF05227
Uniprot:Q81U88
Length = 896
Score = 120 (47.3 bits), Expect = 0.00020, P = 0.00020
Identities = 25/89 (28%), Positives = 53/89 (59%)
Query: 5 VTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVGLEM---DLPVIMMCAHG 61
+T N E L++L+ N N D+++ D+ MP+MDG++ +E + + + ++P+I + A
Sbjct: 803 ITAQNGLE-CLEILKNNTN-IDLILMDIMMPNMDGYETMEHIRMNLGLHEIPIIALTAKA 860
Query: 62 SKEVVMKGVTHDACDYLTKPVRIEELKNI 90
K ++ A DY++KP+ + +L ++
Sbjct: 861 MPNDKEKCLSAGASDYISKPLNLHQLYSV 889
>TIGR_CMR|CJE_1358 [details] [associations]
symbol:CJE_1358 "DNA-binding response regulator"
species:195099 "Campylobacter jejuni RM1221" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] InterPro:IPR001789
InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622
EMBL:CP000025 GenomeReviews:CP000025_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745
HOGENOM:HOG000034819 PIR:A81329 RefSeq:YP_179345.1
ProteinModelPortal:Q5HTP0 STRING:Q5HTP0 GeneID:3231864
KEGG:cjr:CJE1358 PATRIC:20044514 OMA:ACIFEEI ProtClustDB:CLSK879148
BioCyc:CJEJ195099:GJC0-1384-MONOMER Uniprot:Q5HTP0
Length = 221
Score = 111 (44.1 bits), Expect = 0.00020, P = 0.00020
Identities = 36/111 (32%), Positives = 54/111 (48%)
Query: 2 GFSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLL-ELVGLEMDLPVIMMCAH 60
G+ V C+ A+ ALDM + +D+ I DV +P DGF LL EL P I M +
Sbjct: 26 GYEVFLCDNAQEALDM--AYERYFDLWILDVKVPLGDGFSLLKELRKSGKQTPAIFMTSL 83
Query: 61 GSKEVVMKGVTHDACDYLTKPVRIEELKNIWQHVVRKR--KNERKDLEQSG 109
+ + +G DY+ KP + EL +I + KR ++ +D E G
Sbjct: 84 NTTNDLKQGFDAGCDDYIKKPFELAEL-SIRVKALLKRAFSHKNEDFEDLG 133
>TIGR_CMR|CPS_2013 [details] [associations]
symbol:CPS_2013 "C4-dicarboxylate transport
transcriptional regulatory protein" species:167879 "Colwellia
psychrerythraea 34H" [GO:0000156 "phosphorelay response regulator
activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] [GO:0003677 "DNA binding"
evidence=ISS] [GO:0015740 "C4-dicarboxylate transport"
evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PROSITE:PS50045
PROSITE:PS50110 SMART:SM00382 SMART:SM00448 GO:GO:0005524
GO:GO:0035556 GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG2204
HOGENOM:HOG000058489 InterPro:IPR025662 InterPro:IPR025943
InterPro:IPR025944 PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688
RefSeq:YP_268743.1 ProteinModelPortal:Q483M3 STRING:Q483M3
GeneID:3520238 KEGG:cps:CPS_2013 PATRIC:21467153 KO:K10126
OMA:RKHGLNF ProtClustDB:CLSK907021
BioCyc:CPSY167879:GI48-2083-MONOMER Uniprot:Q483M3
Length = 453
Score = 116 (45.9 bits), Expect = 0.00023, P = 0.00023
Identities = 28/97 (28%), Positives = 53/97 (54%)
Query: 3 FSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLL-ELVGLEMDLPVIMMCAHG 61
F V ++A L+ L G +VISD++MP MDG +L+ E+ ++ +L I++ G
Sbjct: 31 FEVQTFSQAHQLLNQLSDTWPG--VVISDINMPKMDGHQLMAEVKNIDSELSTILLTGFG 88
Query: 62 SKEVVMKGVTHDACDYLTKPVRIEELKNIWQHVVRKR 98
+ +K + + A D++ KP ++L + + + KR
Sbjct: 89 DISMAVKAMRNGAYDFIEKPFNNDDLVDTVKRALDKR 125
>TIGR_CMR|GSU_1320 [details] [associations]
symbol:GSU_1320 "sigma-54 dependent DNA-binding response
regulator" species:243231 "Geobacter sulfurreducens PCA"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PRINTS:PR01590
PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382 SMART:SM00448
GO:GO:0005524 GO:GO:0035556 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000058489
InterPro:IPR025662 InterPro:IPR025943 InterPro:IPR025944
PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688 KO:K02481
HSSP:P06143 RefSeq:NP_952373.2 GeneID:2686471 KEGG:gsu:GSU1320
PATRIC:22025417 ProtClustDB:CLSK828298
BioCyc:GSUL243231:GH27-1307-MONOMER Uniprot:Q74DJ6
Length = 461
Score = 116 (45.9 bits), Expect = 0.00023, P = 0.00023
Identities = 29/88 (32%), Positives = 46/88 (52%)
Query: 2 GFSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLL-ELVGLEMDLPVIMMCAH 60
G+ V E L + ++ +V++D+ MP M GF+LL E+ G D VI++ A
Sbjct: 32 GYDVITAGSGEEGLRLF--DERSPALVVTDLKMPGMGGFRLLQEIKGRSPDTAVIVITAF 89
Query: 61 GSKEVVMKGVTHDACDYLTKPVRIEELK 88
G+ E + + A DY+TKP + LK
Sbjct: 90 GAVETAVDAMKAGAYDYITKPFNRDALK 117
>UNIPROTKB|Q48Q61 [details] [associations]
symbol:PSPPH_0146 "Sigma-54 dependent DNA-binding response
regulator" species:264730 "Pseudomonas syringae pv. phaseolicola
1448A" [GO:0003700 "sequence-specific DNA binding transcription
factor activity" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] InterPro:IPR001789
InterPro:IPR002078 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 PROSITE:PS50045 PROSITE:PS50110
SMART:SM00382 SMART:SM00448 GO:GO:0005524 GO:GO:0035556
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 GO:GO:0005622
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 EMBL:CP000058
GenomeReviews:CP000058_GR eggNOG:COG2204 HOGENOM:HOG000058489
InterPro:IPR025662 InterPro:IPR025943 InterPro:IPR025944
PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688 KO:K10126
OMA:RKHGLNF RefSeq:YP_272455.1 ProteinModelPortal:Q48Q61
STRING:Q48Q61 GeneID:3560165 KEGG:psp:PSPPH_0146 PATRIC:19969281
ProtClustDB:CLSK869164 Uniprot:Q48Q61
Length = 461
Score = 111 (44.1 bits), Expect = 0.00027, Sum P(2) = 0.00027
Identities = 23/64 (35%), Positives = 38/64 (59%)
Query: 19 RTNKNGYDIVISDVHMPDMDGFKLLE-LVGLEMDLPVIMMCAHGSKEVVMKGVTHDACDY 77
R ++ +V+SD+ M MDG +LL+ L + DLPV+++ HG + +K + A D+
Sbjct: 49 RIGRDWPGVVVSDIRMQGMDGLELLDQLHAQDPDLPVLLITGHGDVPLAVKAMRAGAYDF 108
Query: 78 LTKP 81
L KP
Sbjct: 109 LEKP 112
Score = 42 (19.8 bits), Expect = 0.00027, Sum P(2) = 0.00027
Identities = 15/56 (26%), Positives = 26/56 (46%)
Query: 158 VELHQQFVSAVKELGFDKAGPKKILELMNIPGLTRENVASHLQKHRLYLSRLSGVS 213
VE ++ + A EL + + + E + +P R+ + L+KH L SG S
Sbjct: 406 VESFERALIAA-ELARPHSSVRSLAEALGVP---RKTLHDKLRKHGLTFGDSSGAS 457
>TIGR_CMR|BA_3229 [details] [associations]
symbol:BA_3229 "DNA-binding response regulator"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0006355 GO:GO:0035556 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034815 HSSP:Q9WYN0
KO:K02483 RefSeq:NP_845535.1 RefSeq:YP_019868.1 RefSeq:YP_029256.1
ProteinModelPortal:Q81NG7 DNASU:1083819
EnsemblBacteria:EBBACT00000008287 EnsemblBacteria:EBBACT00000017508
EnsemblBacteria:EBBACT00000020077 GeneID:1083819 GeneID:2815940
GeneID:2850665 KEGG:ban:BA_3229 KEGG:bar:GBAA_3229 KEGG:bat:BAS2999
OMA:ADNHTTP ProtClustDB:CLSK916969
BioCyc:BANT260799:GJAJ-3061-MONOMER
BioCyc:BANT261594:GJ7F-3168-MONOMER Uniprot:Q81NG7
Length = 224
Score = 110 (43.8 bits), Expect = 0.00027, P = 0.00027
Identities = 26/86 (30%), Positives = 48/86 (55%)
Query: 3 FSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVGLEMDLP-VIMMCAHG 61
+SV C E ALD + N YD+++ D+ +P ++G ++L+ + + V+++ A
Sbjct: 25 YSVDACGNGEDALDYI--NMATYDLIVLDIMIPGINGLQVLQKLRADNHTTSVLLLTAKD 82
Query: 62 SKEVVMKGVTHDACDYLTKPVRIEEL 87
+ + +KG+ A DYL KP +EL
Sbjct: 83 TIDDRVKGLDLGADDYLVKPFAFDEL 108
>TIGR_CMR|CPS_1388 [details] [associations]
symbol:CPS_1388 "transcriptional regulatory protein PhoP"
species:167879 "Colwellia psychrerythraea 34H" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] InterPro:IPR001789
InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622
EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745
HOGENOM:HOG000034815 KO:K07660 RefSeq:YP_268131.1
ProteinModelPortal:Q485Y4 STRING:Q485Y4 GeneID:3519903
KEGG:cps:CPS_1388 PATRIC:21465991 OMA:KASTMIN
ProtClustDB:CLSK907750 BioCyc:CPSY167879:GI48-1469-MONOMER
Uniprot:Q485Y4
Length = 224
Score = 110 (43.8 bits), Expect = 0.00027, P = 0.00027
Identities = 28/108 (25%), Positives = 57/108 (52%)
Query: 3 FSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVGLE-MDLPVIMMCAHG 61
+SV + EIAL + + YDI + D+ +P +DG +++ + + + P++++ A
Sbjct: 25 YSVDVASDGEIAL--FQGLEYDYDIAVIDLGLPKIDGTTVVKALREKGRNFPILILTARD 82
Query: 62 SKEVVMKGVTHDACDYLTKPVRIEELKNIWQHVVRKRKNERKDLEQSG 109
+ + G+ A DYLTKP +EEL + ++R+ + + +G
Sbjct: 83 RWQDKVSGLDAGADDYLTKPFHVEELTSRLNALIRRSAGKASTMINNG 130
>TIGR_CMR|DET_1540 [details] [associations]
symbol:DET_1540 "DNA-binding response regulator"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] InterPro:IPR001789
InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622
EMBL:CP000027 GenomeReviews:CP000027_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745
HOGENOM:HOG000034815 RefSeq:YP_182238.1 ProteinModelPortal:Q3Z6B1
GeneID:3229185 KEGG:det:DET1540 PATRIC:21610100 OMA:ARIRCIL
ProtClustDB:CLSK741608 BioCyc:DETH243164:GJNF-1541-MONOMER
Uniprot:Q3Z6B1
Length = 225
Score = 110 (43.8 bits), Expect = 0.00028, P = 0.00028
Identities = 28/101 (27%), Positives = 53/101 (52%)
Query: 4 SVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVGLEMDLPVIMMCAHGSK 63
++ +R E L M+ + ++VI D+ +PDMDG ++L+ L D P+I++ +
Sbjct: 28 TLLSASRGESGLRMIEEQRP--NLVILDLSLPDMDGLEVLKDARLFCDTPIIILTVRSEE 85
Query: 64 EVVMKGVTHDACDYLTKPVRIEELKNIWQHVVRKRKNERKD 104
V++ + A +Y+ KP R EL + ++R+ KD
Sbjct: 86 SDVVEALELGANEYIIKPFRQMELLARIRCILRRPITTSKD 126
>TIGR_CMR|BA_4920 [details] [associations]
symbol:BA_4920 "DNA-binding response regulator"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
InterPro:IPR016032 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
EMBL:AE016879 EMBL:AE017334 GenomeReviews:AE016879_GR
GenomeReviews:AE017334_GR GO:GO:0003677 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0006351 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034819
SUPFAM:SSF46894 HSSP:P08402 RefSeq:NP_847118.1 RefSeq:YP_021563.2
ProteinModelPortal:Q81KS0 DNASU:1084104
EnsemblBacteria:EBBACT00000011298 EnsemblBacteria:EBBACT00000014550
GeneID:1084104 GeneID:2819868 KEGG:ban:BA_4920 KEGG:bar:GBAA_4920
PATRIC:18787418 OMA:FFVTHPN ProtClustDB:CLSK882384
BioCyc:BANT261594:GJ7F-4779-MONOMER Uniprot:Q81KS0
Length = 229
Score = 110 (43.8 bits), Expect = 0.00029, P = 0.00029
Identities = 27/95 (28%), Positives = 49/95 (51%)
Query: 3 FSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVGLEMDLPVIMMCAHGS 62
F V + E L M + YD++I D+ +P M+GF++ + + D+P++++ A
Sbjct: 26 FQVDVEHSGETGLQMAL--QEDYDLIILDIMLPKMNGFEICKQIRAIKDIPILLVSAKKE 83
Query: 63 KEVVMKGVTHDACDYLTKPVRIEEL-KNIWQHVVR 96
++G+ A DY+TKP EL + H+ R
Sbjct: 84 DIDKIRGLGLGADDYITKPFSPSELVARVKAHISR 118
>UNIPROTKB|Q4KG39 [details] [associations]
symbol:cheY "Chemotaxis protein CheY" species:220664
"Pseudomonas protegens Pf-5" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] [GO:0006935 "chemotaxis"
evidence=ISS] [GO:0035556 "intracellular signal transduction"
evidence=ISS] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 GO:GO:0006355 GO:GO:0005622 GO:GO:0006935
EMBL:CP000076 GenomeReviews:CP000076_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784
HOGENOM:HOG000034820 KO:K03413 OMA:FGFVISD RefSeq:YP_258794.1
ProteinModelPortal:Q4KG39 SMR:Q4KG39 STRING:Q4KG39 GeneID:3477601
KEGG:pfl:PFL_1668 PATRIC:19872565 ProtClustDB:CLSK715044
BioCyc:PFLU220664:GIX8-1676-MONOMER Uniprot:Q4KG39
Length = 123
Score = 93 (37.8 bits), Expect = 0.00031, P = 0.00031
Identities = 26/92 (28%), Positives = 45/92 (48%)
Query: 1 MGFSVT-KCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVGLE---MDLPVIM 56
+GF+ T + + A+ +L N D +++D +MP M G LL V + LPV+M
Sbjct: 23 LGFTNTVEADDGTTAIPVL--NSGSIDFLVTDWNMPGMTGIDLLRHVRADEKLKHLPVLM 80
Query: 57 MCAHGSKEVVMKGVTHDACDYLTKPVRIEELK 88
+ A +E +++ Y+ KP + LK
Sbjct: 81 VTAEAKREQIIEAAQAGVNGYVVKPFTAQALK 112
>UNIPROTKB|Q9KS62 [details] [associations]
symbol:VC_1398 "Chemotaxis protein CheY" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0004871 "signal
transducer activity" evidence=ISS] [GO:0006935 "chemotaxis"
evidence=ISS] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 GO:GO:0006355 GO:GO:0035556 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0005622 GO:GO:0006935 GO:GO:0004871
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 KO:K03413
OMA:AGANFYL HSSP:P06143 PIR:F82205 RefSeq:NP_231041.1
ProteinModelPortal:Q9KS62 DNASU:2614030 GeneID:2614030
KEGG:vch:VC1398 PATRIC:20081860 ProtClustDB:CLSK794124
Uniprot:Q9KS62
Length = 124
Score = 93 (37.8 bits), Expect = 0.00031, P = 0.00031
Identities = 25/91 (27%), Positives = 45/91 (49%)
Query: 1 MGFSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVGLEMDL---PVIMM 57
+G + + + AL+ R + D+ + D++MP MDGF L+ + +L P +M+
Sbjct: 25 IGIFILEASNGVEALE--RALEMPVDLFLVDINMPKMDGFTLVREIRCRPELAGIPTVMI 82
Query: 58 CAHGSKEVVMKGVTHDACDYLTKPVRIEELK 88
+ +G+ A Y+ KPV EEL+
Sbjct: 83 STESQESDRQQGIHMGANLYMVKPVNPEELQ 113
>TIGR_CMR|CPS_4295 [details] [associations]
symbol:CPS_4295 "putative chemotaxis response regulator
CheY" species:167879 "Colwellia psychrerythraea 34H" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0006935 "chemotaxis" evidence=ISS] InterPro:IPR001789
Pfam:PF00072 PROSITE:PS50110 SMART:SM00448 GO:GO:0006355
GO:GO:0035556 GO:GO:0005622 EMBL:CP000083 GenomeReviews:CP000083_GR
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784
HOGENOM:HOG000034820 RefSeq:YP_270945.1 ProteinModelPortal:Q47W77
STRING:Q47W77 GeneID:3521289 KEGG:cps:CPS_4295 PATRIC:21471447
OMA:QHEDLNT BioCyc:CPSY167879:GI48-4305-MONOMER Uniprot:Q47W77
Length = 117
Score = 93 (37.8 bits), Expect = 0.00031, P = 0.00031
Identities = 29/88 (32%), Positives = 48/88 (54%)
Query: 8 CNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLE-LVGLEMDLPVIMMCAHGSKEVV 66
CN AE AL +LR N +I+ D+ MP +DG +L+ + L ++ V ++ A E+
Sbjct: 30 CNGAE-ALTILRDNS--IEILFLDLTMPGIDGIGVLQGIKKLNLNCSVFVISADIQPEMQ 86
Query: 67 MKGVTHDACDYLTKPVRIEEL-KNIWQH 93
K A +++ KPV+ + L N+ QH
Sbjct: 87 NKVKALGAKEFMRKPVKADLLLNNLRQH 114
>TIGR_CMR|VC_1398 [details] [associations]
symbol:VC_1398 "chemotaxis protein CheY" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0005622 GO:GO:0006935 GO:GO:0004871 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 KO:K03413 OMA:AGANFYL
HSSP:P06143 PIR:F82205 RefSeq:NP_231041.1 ProteinModelPortal:Q9KS62
DNASU:2614030 GeneID:2614030 KEGG:vch:VC1398 PATRIC:20081860
ProtClustDB:CLSK794124 Uniprot:Q9KS62
Length = 124
Score = 93 (37.8 bits), Expect = 0.00031, P = 0.00031
Identities = 25/91 (27%), Positives = 45/91 (49%)
Query: 1 MGFSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVGLEMDL---PVIMM 57
+G + + + AL+ R + D+ + D++MP MDGF L+ + +L P +M+
Sbjct: 25 IGIFILEASNGVEALE--RALEMPVDLFLVDINMPKMDGFTLVREIRCRPELAGIPTVMI 82
Query: 58 CAHGSKEVVMKGVTHDACDYLTKPVRIEELK 88
+ +G+ A Y+ KPV EEL+
Sbjct: 83 STESQESDRQQGIHMGANLYMVKPVNPEELQ 113
>TIGR_CMR|BA_0271 [details] [associations]
symbol:BA_0271 "DNA-binding response regulator"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0006355 GO:GO:0035556 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034819 HSSP:P08402
RefSeq:NP_842823.1 RefSeq:YP_016879.1 RefSeq:YP_026540.1
ProteinModelPortal:Q81VD8 DNASU:1085970
EnsemblBacteria:EBBACT00000008300 EnsemblBacteria:EBBACT00000015450
EnsemblBacteria:EBBACT00000024239 GeneID:1085970 GeneID:2815661
GeneID:2850601 KEGG:ban:BA_0271 KEGG:bar:GBAA_0271 KEGG:bat:BAS0256
OMA:EAKEMPI ProtClustDB:CLSK915759
BioCyc:BANT260799:GJAJ-293-MONOMER
BioCyc:BANT261594:GJ7F-302-MONOMER Uniprot:Q81VD8
Length = 233
Score = 110 (43.8 bits), Expect = 0.00031, P = 0.00031
Identities = 31/114 (27%), Positives = 54/114 (47%)
Query: 2 GFSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVGLEMDLPVIMMCAHG 61
G+ V + E L +L N+ +V+ D+ MP +DG + + E ++P+IM+ A
Sbjct: 27 GYKVLQAGDGEEGLRLLEENE--VHLVVLDIMMPKVDGIHMCMKIREEKEMPIIMLSAKT 84
Query: 62 SKEVVMKGVTHDACDYLTKPVR-IEELKNIWQHVVRKRKNERKDLEQSGSVEGG 114
+ G+T A DY+TKP +E + I + R K ++ +E G
Sbjct: 85 QDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMKMNGFAIQNEDELEIG 138
>UNIPROTKB|Q4K714 [details] [associations]
symbol:PFL_4888 "Sigma-54 dependent DNA-binding response
regulator" species:220664 "Pseudomonas protegens Pf-5" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0005524 "ATP binding" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] [GO:0035556
"intracellular signal transduction" evidence=ISS]
InterPro:IPR001789 InterPro:IPR002078 InterPro:IPR002197
InterPro:IPR003593 InterPro:IPR009057 Pfam:PF00072 Pfam:PF00158
Pfam:PF02954 PRINTS:PR01590 PROSITE:PS50045 PROSITE:PS50110
SMART:SM00382 SMART:SM00448 GO:GO:0005524 GO:GO:0006355
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 GO:GO:0005622
Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:CP000076
GenomeReviews:CP000076_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG2204
HOGENOM:HOG000058489 InterPro:IPR025662 InterPro:IPR025943
InterPro:IPR025944 PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688
KO:K02481 RefSeq:YP_261969.1 ProteinModelPortal:Q4K714
STRING:Q4K714 GeneID:3479299 KEGG:pfl:PFL_4888 PATRIC:19879244
OMA:CVERATI ProtClustDB:CLSK937927
BioCyc:PFLU220664:GIX8-4929-MONOMER Uniprot:Q4K714
Length = 465
Score = 115 (45.5 bits), Expect = 0.00031, P = 0.00031
Identities = 32/87 (36%), Positives = 47/87 (54%)
Query: 2 GFSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLL-ELVGLEMDLPVIMMCAH 60
G V AL +L + D+VISD MP MDG +LL E+ LPVI+M A+
Sbjct: 26 GIQVFTAGNGLHALKVLE--QEDIDLVISDWRMPGMDGPQLLGEIKQRYPQLPVIVMTAY 83
Query: 61 GSKEVVMKGVTHDACDYLTKPVRIEEL 87
+ + ++ + + A DY+ KP I+EL
Sbjct: 84 STVKNAVQSMRNGAYDYIAKPFDIDEL 110
>TIGR_CMR|GSU_1879 [details] [associations]
symbol:GSU_1879 "DNA-binding response regulator"
species:243231 "Geobacter sulfurreducens PCA" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] InterPro:IPR001789
InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034819 HSSP:P08402
RefSeq:NP_952928.1 ProteinModelPortal:Q74BZ8 GeneID:2688525
KEGG:gsu:GSU1879 PATRIC:22026623 OMA:SHVESGE ProtClustDB:CLSK828616
BioCyc:GSUL243231:GH27-1891-MONOMER Uniprot:Q74BZ8
Length = 238
Score = 110 (43.8 bits), Expect = 0.00033, P = 0.00033
Identities = 26/86 (30%), Positives = 46/86 (53%)
Query: 2 GFSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELV-GLEMDLPVIMMCAH 60
G+ V+ E AL+ L ++ + ++I DV +P +DGF + E V + +P++++ A
Sbjct: 29 GYRVSHVESGEAALERLTYDR--FALIILDVMLPGIDGFTVCERVRATDARVPILILTAR 86
Query: 61 GSKEVVMKGVTHDACDYLTKPVRIEE 86
+ G+ A DYLTKP + E
Sbjct: 87 ADDGDRITGLDRGADDYLTKPFNLNE 112
>UNIPROTKB|P0AEC5 [details] [associations]
symbol:barA species:83333 "Escherichia coli K-12"
[GO:0009927 "histidine phosphotransfer kinase activity"
evidence=IDA] [GO:0046777 "protein autophosphorylation"
evidence=IDA] [GO:0006468 "protein phosphorylation" evidence=IDA]
[GO:0042542 "response to hydrogen peroxide" evidence=IMP]
[GO:0000156 "phosphorelay response regulator activity"
evidence=IEA] [GO:0023014 "signal transduction by phosphorylation"
evidence=IEA;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0035556 "intracellular signal
transduction" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0071310 "cellular response to organic substance"
evidence=IEP] [GO:0016868 "intramolecular transferase activity,
phosphotransferases" evidence=ISS] [GO:0005887 "integral to plasma
membrane" evidence=ISS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005886 "plasma membrane" evidence=IEA]
[GO:0016021 "integral to membrane" evidence=IEA] [GO:0016020
"membrane" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000160
"phosphorelay signal transduction system" evidence=IEA;IDA]
[GO:0000155 "phosphorelay sensor kinase activity" evidence=IEA;IDA]
InterPro:IPR001789 InterPro:IPR003594 InterPro:IPR003660
InterPro:IPR003661 InterPro:IPR004358 InterPro:IPR008207
InterPro:IPR009082 Pfam:PF00072 Pfam:PF00512 Pfam:PF00672
Pfam:PF01627 Pfam:PF02518 PRINTS:PR00344 PROSITE:PS50110
PROSITE:PS50885 PROSITE:PS50894 SMART:SM00073 SMART:SM00304
SMART:SM00387 SMART:SM00388 SMART:SM00448 InterPro:IPR005467
GO:GO:0016021 GO:GO:0005886 GO:GO:0005524 GO:GO:0006355
GO:GO:0035556 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0046777 GO:GO:0006351 GO:GO:0005622
GO:GO:0042542 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
eggNOG:COG0784 GO:GO:0009927 GO:GO:0000155 Gene3D:1.10.287.130
Gene3D:3.30.565.10 SUPFAM:SSF55874 SUPFAM:SSF47384 PROSITE:PS50109
Gene3D:1.20.120.160 SUPFAM:SSF47226 EMBL:D10888 EMBL:U29580
PIR:S20550 RefSeq:NP_417266.1 RefSeq:YP_490994.1
ProteinModelPortal:P0AEC5 SMR:P0AEC5 DIP:DIP-47932N IntAct:P0AEC5
MINT:MINT-1307958 EnsemblBacteria:EBESCT00000000619
EnsemblBacteria:EBESCT00000017432 GeneID:12933292 GeneID:947255
KEGG:ecj:Y75_p2723 KEGG:eco:b2786 PATRIC:32120988 EchoBASE:EB1341
EcoGene:EG11367 HOGENOM:HOG000272329 KO:K07678 OMA:ANQVISQ
ProtClustDB:PRK11107 BioCyc:EcoCyc:BARA-MONOMER
BioCyc:ECOL316407:JW2757-MONOMER Genevestigator:P0AEC5
GO:GO:0071310 InterPro:IPR019247 Pfam:PF09984 Uniprot:P0AEC5
Length = 918
Score = 118 (46.6 bits), Expect = 0.00035, P = 0.00035
Identities = 31/92 (33%), Positives = 48/92 (52%)
Query: 5 VTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVGL---EMDLPVIMMCAH- 60
V C+ A++ R + +D+++ D+ MPDMDG + EL+ + PVI + AH
Sbjct: 694 VELCDSGHQAVE--RAKQMPFDLILMDIQMPDMDGIRACELIHQLPHQQQTPVIAVTAHA 751
Query: 61 --GSKEVVMKGVTHDACDYLTKPVRIEELKNI 90
G KE ++ G DYL KP+ E L N+
Sbjct: 752 MAGQKEKLL-GA--GMSDYLAKPIEEERLHNL 780
>TIGR_CMR|GSU_1671 [details] [associations]
symbol:GSU_1671 "response regulator/GGDEF domain protein"
species:243231 "Geobacter sulfurreducens PCA" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR001054 InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 Pfam:PF00990 GO:GO:0006355 GO:GO:0005622
EMBL:AE017180 GenomeReviews:AE017180_GR SUPFAM:SSF55073
GO:GO:0016849 GO:GO:0009190 InterPro:IPR000160 SMART:SM00267
TIGRFAMs:TIGR00254 PROSITE:PS50887 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HSSP:P06143 HOGENOM:HOG000167205 RefSeq:NP_952722.1
ProteinModelPortal:Q74CK2 GeneID:2687445 KEGG:gsu:GSU1671
PATRIC:22026193 OMA:IADWLMP ProtClustDB:CLSK740862
BioCyc:GSUL243231:GH27-1671-MONOMER Uniprot:Q74CK2
Length = 322
Score = 112 (44.5 bits), Expect = 0.00038, P = 0.00038
Identities = 32/116 (27%), Positives = 60/116 (51%)
Query: 2 GFSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVGLEMD---LPVIMMC 58
G+ V + AL++ NK Y IV++D MP+MDG +L + + +I++
Sbjct: 39 GYDVVMAENGKEALEIF--NKGYYPIVMTDWVMPEMDGLELCRAIRADCSGRYTYIILLT 96
Query: 59 AHGSKEVVMKGVTHDACDYLTKPV-RIEELKNIW--QHVVRKRKNERKDLEQSGSV 111
+ SK V+ G+ A +YL KP ++E L + + ++ + +K LE+ G++
Sbjct: 97 SQDSKNDVIAGLEAGADEYLVKPAHQVELLTRLKTAKRILDLESSLKKSLEEIGNL 152
>UNIPROTKB|Q485M3 [details] [associations]
symbol:flrC "Flagellar regulatory protein C" species:167879
"Colwellia psychrerythraea 34H" [GO:0001539 "ciliary or flagellar
motility" evidence=ISS] [GO:0003677 "DNA binding" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0030092 "regulation of flagellum assembly"
evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PRINTS:PR01590
PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382 SMART:SM00448
GO:GO:0005524 GO:GO:0019861 GO:GO:0006355 GO:GO:0035556
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 Gene3D:1.10.10.60
SUPFAM:SSF46689 EMBL:CP000083 GenomeReviews:CP000083_GR
GO:GO:0017111 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
eggNOG:COG2204 HOGENOM:HOG000058489 InterPro:IPR025943
InterPro:IPR025944 PROSITE:PS00676 PROSITE:PS00688 GO:GO:0001539
GO:GO:0030092 RefSeq:YP_268242.1 ProteinModelPortal:Q485M3
STRING:Q485M3 GeneID:3520612 KEGG:cps:CPS_1500 PATRIC:21466207
KO:K10943 OMA:FRETRND ProtClustDB:CLSK874687
BioCyc:CPSY167879:GI48-1581-MONOMER Uniprot:Q485M3
Length = 446
Score = 114 (45.2 bits), Expect = 0.00038, P = 0.00038
Identities = 29/89 (32%), Positives = 48/89 (53%)
Query: 3 FSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELV-GLEMDLPVIMMCAHG 61
+ + + E AL L++ DIVISDV M M G LL+ + +LPV++M A G
Sbjct: 28 YHCVEADSGEAALLALKSQH--VDIVISDVQMGGMSGLSLLKSIKNHHANLPVLLMTAFG 85
Query: 62 SKEVVMKGVTHDACDYLTKPVRIEELKNI 90
+ + ++ + AC+Y+ KP + L N+
Sbjct: 86 TIDDAVQAMKDGACNYIAKPFAPQVLLNM 114
>TIGR_CMR|CPS_1500 [details] [associations]
symbol:CPS_1500 "flagellar regulatory protein C"
species:167879 "Colwellia psychrerythraea 34H" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0001539 "ciliary or flagellar motility" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] [GO:0030092 "regulation
of flagellum assembly" evidence=ISS] InterPro:IPR001789
InterPro:IPR002078 InterPro:IPR002197 InterPro:IPR003593
InterPro:IPR009057 Pfam:PF00072 Pfam:PF00158 Pfam:PF02954
PRINTS:PR01590 PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382
SMART:SM00448 GO:GO:0005524 GO:GO:0019861 GO:GO:0006355
GO:GO:0035556 GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG2204
HOGENOM:HOG000058489 InterPro:IPR025943 InterPro:IPR025944
PROSITE:PS00676 PROSITE:PS00688 GO:GO:0001539 GO:GO:0030092
RefSeq:YP_268242.1 ProteinModelPortal:Q485M3 STRING:Q485M3
GeneID:3520612 KEGG:cps:CPS_1500 PATRIC:21466207 KO:K10943
OMA:FRETRND ProtClustDB:CLSK874687
BioCyc:CPSY167879:GI48-1581-MONOMER Uniprot:Q485M3
Length = 446
Score = 114 (45.2 bits), Expect = 0.00038, P = 0.00038
Identities = 29/89 (32%), Positives = 48/89 (53%)
Query: 3 FSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELV-GLEMDLPVIMMCAHG 61
+ + + E AL L++ DIVISDV M M G LL+ + +LPV++M A G
Sbjct: 28 YHCVEADSGEAALLALKSQH--VDIVISDVQMGGMSGLSLLKSIKNHHANLPVLLMTAFG 85
Query: 62 SKEVVMKGVTHDACDYLTKPVRIEELKNI 90
+ + ++ + AC+Y+ KP + L N+
Sbjct: 86 TIDDAVQAMKDGACNYIAKPFAPQVLLNM 114
>TIGR_CMR|GSU_1891 [details] [associations]
symbol:GSU_1891 "response regulator" species:243231
"Geobacter sulfurreducens PCA" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001789
InterPro:IPR003607 InterPro:IPR006674 Pfam:PF00072 Pfam:PF01966
PROSITE:PS50110 SMART:SM00448 SMART:SM00471 GO:GO:0006355
GO:GO:0035556 GO:GO:0046872 GO:GO:0008152 GO:GO:0005622
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0008081
Gene3D:1.10.3210.10 HOGENOM:HOG000266481 HSSP:P06143
RefSeq:NP_952940.1 ProteinModelPortal:Q74BY7 GeneID:2688472
KEGG:gsu:GSU1891 PATRIC:22026647 OMA:FATIRTH ProtClustDB:CLSK924546
BioCyc:GSUL243231:GH27-1919-MONOMER Uniprot:Q74BY7
Length = 379
Score = 113 (44.8 bits), Expect = 0.00038, P = 0.00038
Identities = 28/98 (28%), Positives = 54/98 (55%)
Query: 19 RTNKNGYDIVISDVHMPDMDGFKLLELVGLEM-DLPVIMMCAHGSKEVVMKGVTHDACDY 77
R + G DIVI+D++MP+M G ++L + D+PVI+M + V ++ + A D+
Sbjct: 45 RLSCGGIDIVITDINMPEMTGIEVLRAIRKSNPDVPVILMTGYAELSVAVEAIKQGAFDF 104
Query: 78 LTKPV-------RIEELKNIWQHVVRKRKNERKDLEQS 108
+ KP +E+ N ++ +++ KN + +LE +
Sbjct: 105 IIKPYDPLYLFHAVEKGINYYR-LLKIEKNYKAELENT 141
>UNIPROTKB|P0ACZ8 [details] [associations]
symbol:cusR "CusR-Pasp DNA binding transcriptional
activator" species:83333 "Escherichia coli K-12" [GO:0001114
"protein-DNA-RNA complex" evidence=IDA] [GO:0001046 "core promoter
sequence-specific DNA binding" evidence=IDA] [GO:0046688 "response
to copper ion" evidence=IDA;IMP] [GO:0010628 "positive regulation
of gene expression" evidence=IMP] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA;ISS;IDA] [GO:0000156
"phosphorelay response regulator activity" evidence=IEA]
[GO:0035556 "intracellular signal transduction" evidence=IEA]
[GO:0032993 "protein-DNA complex" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;IMP] InterPro:IPR001789
InterPro:IPR001867 InterPro:IPR006291 Pfam:PF00072 Pfam:PF00486
PROSITE:PS50110 SMART:SM00448 SMART:SM00862 GO:GO:0005737
GO:GO:0006355 GO:GO:0035556 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0006351 GO:GO:0046688 GO:GO:0010628
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0000160
EMBL:U82598 eggNOG:COG0745 GO:GO:0001046 GO:GO:0032993
EMBL:AF245661 EMBL:U82579 PIR:A64790 RefSeq:NP_415103.1
RefSeq:YP_488858.1 ProteinModelPortal:P0ACZ8 SMR:P0ACZ8
IntAct:P0ACZ8 EnsemblBacteria:EBESCT00000001137
EnsemblBacteria:EBESCT00000017813 GeneID:12930897 GeneID:945003
KEGG:ecj:Y75_p0558 KEGG:eco:b0571 PATRIC:32116310 EchoBASE:EB3612
EcoGene:EG13851 HOGENOM:HOG000034815 KO:K07665 OMA:AMTEPYD
ProtClustDB:PRK09836 BioCyc:EcoCyc:G6319-MONOMER
BioCyc:ECOL316407:JW0560-MONOMER Genevestigator:P0ACZ8
GO:GO:0001114 TIGRFAMs:TIGR01387 Uniprot:P0ACZ8
Length = 227
Score = 109 (43.4 bits), Expect = 0.00038, P = 0.00038
Identities = 21/64 (32%), Positives = 40/64 (62%)
Query: 25 YDIVISDVHMPDMDGFKLLELV-GLEMDLPVIMMCAHGSKEVVMKGVTHDACDYLTKPVR 83
YD++I D+ +PD++G+ ++ ++ +P++++ A G+ E +KG+ A DYL KP
Sbjct: 45 YDLIILDIMLPDVNGWDIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFA 104
Query: 84 IEEL 87
EL
Sbjct: 105 FAEL 108
>TIGR_CMR|CPS_1826 [details] [associations]
symbol:CPS_1826 "sensor protein TorS" species:167879
"Colwellia psychrerythraea 34H" [GO:0000155 "phosphorelay sensor
kinase activity" evidence=ISS] [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001789
InterPro:IPR003594 InterPro:IPR003660 InterPro:IPR003661
InterPro:IPR004358 InterPro:IPR008207 InterPro:IPR009082
InterPro:IPR014302 Pfam:PF00072 Pfam:PF00512 Pfam:PF02518
PIRSF:PIRSF036437 PRINTS:PR00344 PROSITE:PS50110 PROSITE:PS50885
PROSITE:PS50894 SMART:SM00073 SMART:SM00304 SMART:SM00387
SMART:SM00388 SMART:SM00448 InterPro:IPR005467 GO:GO:0016021
GO:GO:0005524 GO:GO:0006355 GO:GO:0035556 GO:GO:0005622
EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0023014 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784 GO:GO:0000155
Gene3D:1.10.287.130 Gene3D:3.30.565.10 SUPFAM:SSF55874
SUPFAM:SSF47384 PROSITE:PS50109 Gene3D:1.20.120.160 SUPFAM:SSF47226
KO:K07647 OMA:PNQGRSR TIGRFAMs:TIGR02956 RefSeq:YP_268556.1
ProteinModelPortal:Q484F9 STRING:Q484F9 GeneID:3521440
KEGG:cps:CPS_1826 PATRIC:21466801 ProtClustDB:CLSK869735
BioCyc:CPSY167879:GI48-1896-MONOMER Uniprot:Q484F9
Length = 1000
Score = 118 (46.6 bits), Expect = 0.00038, P = 0.00038
Identities = 47/181 (25%), Positives = 87/181 (48%)
Query: 1 MGFSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKL---LELVGLEMDLP--VI 55
+G VT AL + N+ +D+ + D+++PD+DG L L+++ E P I
Sbjct: 741 LGHKVTAAKDGASALKCMHNNR--FDLALLDINLPDIDGVTLSQQLKVIAKEKQTPFKTI 798
Query: 56 MMCAHGSKEVVMKGVTHDACDYLTKPVRIEELKNIWQHVVRKRKNERKDLEQSGSVEGGA 115
+ AH E + K + ++ KPV++++LK + + N R + Q VEGGA
Sbjct: 799 AVSAHVFNEDIAKFIKSGFDGFVAKPVQMKKLK---PSIAKVMFNVRGFVNQE--VEGGA 853
Query: 116 QQP-KPFEESDDSYSVNEGTSNSRKDEEEEAEKRLKKPRLVWSVELHQQFVSAVKELGFD 174
+Q +P E +++ KD E+++ L + L++ ++ Q ++ LG D
Sbjct: 854 EQETEPCLELKVEMPEAVVIASTNKDSLVESQE-LSE-FLLFDADIPNQ---DIEYLGSD 908
Query: 175 K 175
K
Sbjct: 909 K 909
>UNIPROTKB|Q1DF43 [details] [associations]
symbol:MXAN_0460 "Response regulator" species:246197
"Myxococcus xanthus DK 1622" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 GO:GO:0006355 GO:GO:0035556 GO:GO:0005622
EMBL:CP000113 GenomeReviews:CP000113_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG2204
RefSeq:YP_628730.1 ProteinModelPortal:Q1DF43 IntAct:Q1DF43
STRING:Q1DF43 GeneID:4103270 KEGG:mxa:MXAN_0460 PATRIC:22643509
HOGENOM:HOG000025389 OMA:NLELEGH ProtClustDB:CLSK955207
BioCyc:MXAN246197:GIWU-455-MONOMER Uniprot:Q1DF43
Length = 255
Score = 110 (43.8 bits), Expect = 0.00039, P = 0.00039
Identities = 27/81 (33%), Positives = 44/81 (54%)
Query: 2 GFSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVGLEM-DLPVIMMCAH 60
G +V + E AL +L K D+V++D+ MP + G +LL + E D+PV++M A
Sbjct: 33 GHTVLEAANGEEALRLLE--KQSVDVVLTDIRMPGLHGVELLRRIKQERPDMPVVLMTAF 90
Query: 61 GSKEVVMKGVTHDACDYLTKP 81
++E+V + A L KP
Sbjct: 91 TAEELVDDALAEGAFTVLPKP 111
>TIGR_CMR|GSU_0811 [details] [associations]
symbol:GSU_0811 "nitrogen regulation protein NtrX"
species:243231 "Geobacter sulfurreducens PCA" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0019740 "nitrogen utilization" evidence=ISS]
InterPro:IPR001789 InterPro:IPR002078 InterPro:IPR002197
InterPro:IPR003593 InterPro:IPR009057 Pfam:PF00072 Pfam:PF00158
Pfam:PF02954 PRINTS:PR01590 PROSITE:PS50045 PROSITE:PS50110
SMART:SM00382 SMART:SM00448 GO:GO:0005524 GO:GO:0035556
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 GO:GO:0005622
Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000058489
InterPro:IPR025943 InterPro:IPR025944 PROSITE:PS00676
PROSITE:PS00688 KO:K13599 RefSeq:NP_951868.1
ProteinModelPortal:Q74EZ8 GeneID:2685237 KEGG:gsu:GSU0811
PATRIC:22024383 OMA:DIWMPRL BioCyc:GSUL243231:GH27-761-MONOMER
Uniprot:Q74EZ8
Length = 456
Score = 114 (45.2 bits), Expect = 0.00039, P = 0.00039
Identities = 26/79 (32%), Positives = 45/79 (56%)
Query: 11 AEIALDMLRT-NKNGYDIVISDVHMPDMDGFKLLE-LVGLEMDLPVIMMCAHGSKEVVMK 68
A ++ L T K+ D+V+ D+ MP +DG + L+ L + L V+MM HG+ E +K
Sbjct: 32 ARDGVEALETVQKDRPDLVLLDIWMPRLDGMETLQRLKTADPGLTVVMMSGHGTIETAVK 91
Query: 69 GVTHDACDYLTKPVRIEEL 87
A D++ KP+ +E++
Sbjct: 92 STKMGAFDFIEKPLSLEKI 110
>TIGR_CMR|SPO_2087 [details] [associations]
symbol:SPO_2087 "nitrogen regulation protein NtrC"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0000156 "phosphorelay
response regulator activity" evidence=ISS] [GO:0000160
"phosphorelay signal transduction system" evidence=ISS] [GO:0009399
"nitrogen fixation" evidence=ISS] InterPro:IPR001789
InterPro:IPR002078 InterPro:IPR002197 InterPro:IPR003593
InterPro:IPR009057 Pfam:PF00072 Pfam:PF00158 Pfam:PF02954
PRINTS:PR01590 PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382
SMART:SM00448 GO:GO:0005524 GO:GO:0035556 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0017111
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
HOGENOM:HOG000058489 InterPro:IPR025662 InterPro:IPR025944
PROSITE:PS00675 PROSITE:PS00688 KO:K07712 RefSeq:YP_167317.1
ProteinModelPortal:Q5LRN8 DNASU:3195357 GeneID:3195357
KEGG:sil:SPO2087 PATRIC:23377515 OMA:YEEAGSA ProtClustDB:CLSK933754
Uniprot:Q5LRN8
Length = 457
Score = 114 (45.2 bits), Expect = 0.00039, P = 0.00039
Identities = 30/94 (31%), Positives = 52/94 (55%)
Query: 26 DIVISDVHMPDMDGFKLLELVGLEMD-LPVIMMCAHGSKEVVMKGVTHDACDYLTKPVRI 84
D+VISDV MPD +G ++L + + LPVI++ A + ++ +A DYL KP
Sbjct: 48 DVVISDVVMPDGNGLEMLPKIAQDRPGLPVIVISAQNTIMTAIQAAEAEAYDYLPKPF-- 105
Query: 85 EELKNIWQHVVRKRKNERKDLEQSGSVEGGAQQP 118
+L ++ + R + +R+ + S E GA++P
Sbjct: 106 -DLPDLMKRTARALEQKRRTVS-SEPREEGAERP 137
>TIGR_CMR|GSU_0598 [details] [associations]
symbol:GSU_0598 "sigma-54 dependent DNA-binding response
regulator" species:243231 "Geobacter sulfurreducens PCA"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PROSITE:PS50045
PROSITE:PS50110 SMART:SM00382 SMART:SM00448 GO:GO:0005524
GO:GO:0035556 GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000058489
InterPro:IPR025662 InterPro:IPR025943 InterPro:IPR025944
PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688 HSSP:P06143
RefSeq:NP_951656.1 ProteinModelPortal:Q74FK9 GeneID:2688651
KEGG:gsu:GSU0598 PATRIC:22023947 OMA:SGMEVLK ProtClustDB:CLSK827940
BioCyc:GSUL243231:GH27-583-MONOMER Uniprot:Q74FK9
Length = 470
Score = 114 (45.2 bits), Expect = 0.00041, P = 0.00041
Identities = 25/87 (28%), Positives = 53/87 (60%)
Query: 2 GFSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVG-LEMDLPVIMMCAH 60
G+ V +IAL+ L+ ++N Y +VI+D+ MP M G ++L+ + L+ ++PVI++
Sbjct: 27 GYHVETSASGQIALERLQ-DEN-YGLVITDLKMPGMSGMEVLKAIKVLQPEVPVIIITGF 84
Query: 61 GSKEVVMKGVTHDACDYLTKPVRIEEL 87
+ + ++ + + A DY+ KP +++
Sbjct: 85 STVDTAVEAMKNGAFDYIAKPFTPDQI 111
>TIGR_CMR|BA_5715 [details] [associations]
symbol:BA_5715 "DNA-binding response regulator YycF"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0006355 GO:GO:0035556 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034819 HSSP:P08402
RefSeq:NP_847861.1 RefSeq:YP_022401.1 RefSeq:YP_031556.1
ProteinModelPortal:Q81JJ0 SMR:Q81JJ0 IntAct:Q81JJ0 DNASU:1085472
EnsemblBacteria:EBBACT00000008903 EnsemblBacteria:EBBACT00000016684
EnsemblBacteria:EBBACT00000023802 GeneID:1085472 GeneID:2816053
GeneID:2852841 KEGG:ban:BA_5715 KEGG:bar:GBAA_5715 KEGG:bat:BAS5319
KO:K07668 OMA:KEQESND ProtClustDB:CLSK2391406
BioCyc:BANT260799:GJAJ-5392-MONOMER
BioCyc:BANT261594:GJ7F-5568-MONOMER Uniprot:Q81JJ0
Length = 235
Score = 109 (43.4 bits), Expect = 0.00042, P = 0.00042
Identities = 34/138 (24%), Positives = 65/138 (47%)
Query: 2 GFSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVGLEMDLPVIMMCAHG 61
GF + + + A++ + + D+V+ D+ +P DG ++ + ++P+IM+ A
Sbjct: 27 GFEIVMAHDGDEAIE--KATEEQPDMVLLDIMLPGKDGLEVCREIRKSSEMPIIMLTAKD 84
Query: 62 SKEVVMKGVTHDACDYLTKPVRIEELKNIWQHVVRKRKNERKDLEQSGSVEGGAQQPK-- 119
S+ + G+ A DY+TKP EL + R + N R+ +Q G+ E
Sbjct: 85 SEIDKVLGLELGADDYVTKPFSTREL------LARVKANLRRH-QQGGAAEKEENTEMVI 137
Query: 120 -PFEESDDSYSVNEGTSN 136
P + ++YSV + N
Sbjct: 138 GPIVINPNAYSVTKREEN 155
>UNIPROTKB|Q9KQ67 [details] [associations]
symbol:VC_2135 "Sigma-54 dependent response regulator"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0001539 "ciliary or flagellar motility" evidence=ISS]
[GO:0030092 "regulation of flagellum assembly" evidence=ISS]
InterPro:IPR001789 InterPro:IPR002078 InterPro:IPR002197
InterPro:IPR003593 InterPro:IPR009057 Pfam:PF00072 Pfam:PF00158
Pfam:PF02954 PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382
SMART:SM00448 GO:GO:0005524 GO:GO:0035556 GO:GO:0003677
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003700 GO:GO:0006351
GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0017111
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 InterPro:IPR025943
InterPro:IPR025944 PROSITE:PS00676 PROSITE:PS00688 GO:GO:0001539
GO:GO:0030092 KO:K10943 ProtClustDB:CLSK874687 HSSP:P41789
OMA:NWPNLPV PIR:G82114 RefSeq:NP_231766.1 ProteinModelPortal:Q9KQ67
DNASU:2613391 GeneID:2613391 KEGG:vch:VC2135 PATRIC:20083297
Uniprot:Q9KQ67
Length = 479
Score = 114 (45.2 bits), Expect = 0.00042, P = 0.00042
Identities = 31/104 (29%), Positives = 51/104 (49%)
Query: 2 GFSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVGLEM-DLPVIMMCAH 60
G+ + + AE AL L+ + DIV+SDV M M G LL + +LPV++M A+
Sbjct: 29 GYEWLEADCAEDAL--LKLKSHSVDIVVSDVQMAGMGGLALLRSIKQHWPNLPVLLMTAY 86
Query: 61 GSKEVVMKGVTHDACDYLTKPVRIEELKNIWQHVVRKRKNERKD 104
+ + + + A DY+ KP E L N+ + ++ D
Sbjct: 87 ANIQDAVSAMKDGAIDYMAKPFAPEVLLNMVSRYAPVKSDDNGD 130
>TIGR_CMR|VC_2135 [details] [associations]
symbol:VC_2135 "flagellar regulatory protein C" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0001539 "ciliary or
flagellar motility" evidence=ISS] [GO:0030092 "regulation of
flagellum assembly" evidence=ISS] InterPro:IPR001789
InterPro:IPR002078 InterPro:IPR002197 InterPro:IPR003593
InterPro:IPR009057 Pfam:PF00072 Pfam:PF00158 Pfam:PF02954
PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382 SMART:SM00448
GO:GO:0005524 GO:GO:0035556 GO:GO:0003677 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0003700 GO:GO:0006351 GO:GO:0005622
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 InterPro:IPR025943
InterPro:IPR025944 PROSITE:PS00676 PROSITE:PS00688 GO:GO:0001539
GO:GO:0030092 KO:K10943 ProtClustDB:CLSK874687 HSSP:P41789
OMA:NWPNLPV PIR:G82114 RefSeq:NP_231766.1 ProteinModelPortal:Q9KQ67
DNASU:2613391 GeneID:2613391 KEGG:vch:VC2135 PATRIC:20083297
Uniprot:Q9KQ67
Length = 479
Score = 114 (45.2 bits), Expect = 0.00042, P = 0.00042
Identities = 31/104 (29%), Positives = 51/104 (49%)
Query: 2 GFSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVGLEM-DLPVIMMCAH 60
G+ + + AE AL L+ + DIV+SDV M M G LL + +LPV++M A+
Sbjct: 29 GYEWLEADCAEDAL--LKLKSHSVDIVVSDVQMAGMGGLALLRSIKQHWPNLPVLLMTAY 86
Query: 61 GSKEVVMKGVTHDACDYLTKPVRIEELKNIWQHVVRKRKNERKD 104
+ + + + A DY+ KP E L N+ + ++ D
Sbjct: 87 ANIQDAVSAMKDGAIDYMAKPFAPEVLLNMVSRYAPVKSDDNGD 130
>UNIPROTKB|Q9KKK0 [details] [associations]
symbol:VC_A1105 "DNA-binding response regulator"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] [GO:0035556 "intracellular signal transduction"
evidence=ISS] InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072
Pfam:PF00486 PROSITE:PS50110 SMART:SM00448 SMART:SM00862
GO:GO:0006355 GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0005622 EMBL:AE003853 GenomeReviews:AE003853_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HSSP:Q9WYN0 KO:K02483 PIR:C82378
RefSeq:NP_233484.1 ProteinModelPortal:Q9KKK0 DNASU:2612779
GeneID:2612779 KEGG:vch:VCA1105 PATRIC:20086728 OMA:HGYTVDW
ProtClustDB:CLSK789271 Uniprot:Q9KKK0
Length = 218
Score = 108 (43.1 bits), Expect = 0.00045, P = 0.00045
Identities = 29/112 (25%), Positives = 57/112 (50%)
Query: 2 GFSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVGLE-MDLPVIMMCAH 60
G++V R + L+T + + +I D+ +PDMDG ++L + LPV+++ A
Sbjct: 24 GYTVDWLERGGGVVTALKTEQ--FTALILDLTLPDMDGLEVLRQIRRAGYTLPVMILTAR 81
Query: 61 GSKEVVMKGVTHDACDYLTKPVRIEELKNIWQHVVRKRKNERKDLEQSGSVE 112
+KG+ A +Y+ KP +EEL + ++R+ ++L G ++
Sbjct: 82 DDISDRVKGLDGGADEYIGKPFALEELLARLRLIIRRSSGSAEELISVGELD 133
>TIGR_CMR|VC_A1105 [details] [associations]
symbol:VC_A1105 "DNA-binding response regulator"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486
PROSITE:PS50110 SMART:SM00448 SMART:SM00862 GO:GO:0006355
GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622
EMBL:AE003853 GenomeReviews:AE003853_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HSSP:Q9WYN0 KO:K02483 PIR:C82378
RefSeq:NP_233484.1 ProteinModelPortal:Q9KKK0 DNASU:2612779
GeneID:2612779 KEGG:vch:VCA1105 PATRIC:20086728 OMA:HGYTVDW
ProtClustDB:CLSK789271 Uniprot:Q9KKK0
Length = 218
Score = 108 (43.1 bits), Expect = 0.00045, P = 0.00045
Identities = 29/112 (25%), Positives = 57/112 (50%)
Query: 2 GFSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVGLE-MDLPVIMMCAH 60
G++V R + L+T + + +I D+ +PDMDG ++L + LPV+++ A
Sbjct: 24 GYTVDWLERGGGVVTALKTEQ--FTALILDLTLPDMDGLEVLRQIRRAGYTLPVMILTAR 81
Query: 61 GSKEVVMKGVTHDACDYLTKPVRIEELKNIWQHVVRKRKNERKDLEQSGSVE 112
+KG+ A +Y+ KP +EEL + ++R+ ++L G ++
Sbjct: 82 DDISDRVKGLDGGADEYIGKPFALEELLARLRLIIRRSSGSAEELISVGELD 133
>TIGR_CMR|CHY_1367 [details] [associations]
symbol:CHY_1367 "C4-dicarboxylate response regulator"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] InterPro:IPR001789 InterPro:IPR005471
InterPro:IPR024187 Pfam:PF00072 Pfam:PF09339 PIRSF:PIRSF006171
PROSITE:PS50110 SMART:SM00448 GO:GO:0005737 GO:GO:0006355
GO:GO:0035556 GO:GO:0003677 EMBL:CP000141 GenomeReviews:CP000141_GR
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0009605 GO:GO:0001071
eggNOG:COG4565 HOGENOM:HOG000034816 RefSeq:YP_360200.1
ProteinModelPortal:Q3ACD4 STRING:Q3ACD4 GeneID:3728031
KEGG:chy:CHY_1367 PATRIC:21275867 KO:K11692 OMA:YMPKKDG
BioCyc:CHYD246194:GJCN-1366-MONOMER Uniprot:Q3ACD4
Length = 220
Score = 108 (43.1 bits), Expect = 0.00046, P = 0.00046
Identities = 31/114 (27%), Positives = 60/114 (52%)
Query: 16 DMLRTNKN-GYDIVISDVHMPDMDGFKLL-ELVGLEMDLPVIMMCAHGSKEVVMKGVTHD 73
++L KN +++I D+++PD+DG LL E+ + + V+ + A E+V + + +
Sbjct: 38 ELLNFLKNHSPELLILDIYLPDIDGLTLLKEIRRQNISVDVLAITAAQQGEIVAELLRYG 97
Query: 74 ACDYLTKPVRIEEL-------KNIWQHVVRKRKNERKDLEQS-GSVEGGAQQPK 119
DY+ KP + E L KN + + RKR +++D+++ G + PK
Sbjct: 98 VVDYIIKPFKKERLVKALLTYKNKYLKIGRKRSVQQEDIDRLFARSSAGGELPK 151
>TIGR_CMR|SO_4637 [details] [associations]
symbol:SO_4637 "DNA-binding response regulator"
species:211586 "Shewanella oneidensis MR-1" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] InterPro:IPR001789
InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622
EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034815 HSSP:Q9WYN0
RefSeq:NP_720153.1 ProteinModelPortal:Q8E8M6 GeneID:1172218
KEGG:son:SO_4637 PATRIC:23528935 OMA:DCAYHGE ProtClustDB:CLSK907746
Uniprot:Q8E8M6
Length = 222
Score = 108 (43.1 bits), Expect = 0.00047, P = 0.00047
Identities = 23/78 (29%), Positives = 46/78 (58%)
Query: 12 EIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVGLEM--DLPVIMMCAHGSKEVVMKG 69
E A+++++ +N YD++I D+ MP +DG + ++ + E+ + P++ + A S + +
Sbjct: 34 ESAINLIQ--QNHYDVIIMDIMMPKLDGIRTVKKLREELFCNTPILFLTARDSLQDKIDS 91
Query: 70 VTHDACDYLTKPVRIEEL 87
T D+L KP +EEL
Sbjct: 92 FTSGGDDFLNKPFAMEEL 109
>TIGR_CMR|CPS_1865 [details] [associations]
symbol:CPS_1865 "DNA-binding response regulator"
species:167879 "Colwellia psychrerythraea 34H" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] InterPro:IPR001789
InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622
EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745
HOGENOM:HOG000034815 RefSeq:YP_268595.1 ProteinModelPortal:Q484C0
STRING:Q484C0 GeneID:3522541 KEGG:cps:CPS_1865 PATRIC:21466873
OMA:DINTHQV BioCyc:CPSY167879:GI48-1935-MONOMER Uniprot:Q484C0
Length = 223
Score = 108 (43.1 bits), Expect = 0.00048, P = 0.00048
Identities = 25/96 (26%), Positives = 49/96 (51%)
Query: 3 FSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVGLE-MDLPVIMMCAHG 61
F + + L + ++ K +D +I D+ +P +DG L + + E + P+IM+ A
Sbjct: 25 FDLDYAATGNLGLSLAQSQK--FDCIILDIMLPGLDGISLCQQLRAEGNNTPIIMLTARD 82
Query: 62 SKEVVMKGVTHDACDYLTKPVRIEELKNIWQHVVRK 97
+ + ++ G+ A DY+ KP +E L+ V R+
Sbjct: 83 TNDDMLLGLRQGADDYIVKPFNLELLEARIHSVTRR 118
>TIGR_CMR|CHY_1125 [details] [associations]
symbol:CHY_1125 "response regulator" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR001789 InterPro:IPR005471 Pfam:PF00072 Pfam:PF09339
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
GO:GO:0003677 EMBL:CP000141 GenomeReviews:CP000141_GR
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745
RefSeq:YP_359971.1 ProteinModelPortal:Q3AD13 STRING:Q3AD13
GeneID:3727659 KEGG:chy:CHY_1125 PATRIC:21275390
HOGENOM:HOG000131195 OMA:RNEYLWI ProtClustDB:CLSK289825
BioCyc:CHYD246194:GJCN-1124-MONOMER Uniprot:Q3AD13
Length = 205
Score = 107 (42.7 bits), Expect = 0.00048, P = 0.00048
Identities = 33/126 (26%), Positives = 59/126 (46%)
Query: 1 MGFSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVG-LEMDLPVIMMCA 59
MG+ K I ++ K D+V+ D HMP +DG +E + ++ +P+I++
Sbjct: 23 MGWEAIKAENGAIGIEKFVREKP--DMVLVDYHMPALDGLDTVERIREIDQGVPIIVLTV 80
Query: 60 HGSKEVVMKGVTHDACDYLTKPVR----IEELKNIWQHVVRKRKNERKDLEQSGSVEGGA 115
+++ K + A D+ KP++ I LK + + R E+KD Q G + G
Sbjct: 81 DERQQIADKFLEVGASDFALKPIKAPDLIARLKVHARMIEINRSQEKKD--QDGFLAKGI 138
Query: 116 QQPKPF 121
+ K F
Sbjct: 139 NK-KTF 143
>UNIPROTKB|Q11156 [details] [associations]
symbol:regX3 "Sensory transduction protein regX3"
species:1773 "Mycobacterium tuberculosis" [GO:0003677 "DNA binding"
evidence=IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IDA] [GO:0009405 "pathogenesis"
evidence=IDA] [GO:0019217 "regulation of fatty acid metabolic
process" evidence=IDA] [GO:0019220 "regulation of phosphate
metabolic process" evidence=IDA] [GO:0080134 "regulation of
response to stress" evidence=IDA] InterPro:IPR001789
InterPro:IPR001867 InterPro:IPR016032 Pfam:PF00072 Pfam:PF00486
PROSITE:PS50110 SMART:SM00448 SMART:SM00862 GO:GO:0009405
GO:GO:0006355 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR GO:GO:0035556 GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0019217 GO:GO:0006351
EMBL:BX842573 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0745 HOGENOM:HOG000034819 SUPFAM:SSF46894
GO:GO:0080134 GO:GO:0019220 EMBL:Y13628 PIR:F70744
RefSeq:NP_215005.1 RefSeq:NP_334919.1 RefSeq:YP_006513821.1
PDB:2OQR PDBsum:2OQR ProteinModelPortal:Q11156 SMR:Q11156
PRIDE:Q11156 EnsemblBacteria:EBMYCT00000001447
EnsemblBacteria:EBMYCT00000072066 GeneID:13318362 GeneID:887195
GeneID:923874 KEGG:mtc:MT0510 KEGG:mtu:Rv0491 KEGG:mtv:RVBD_0491
PATRIC:18122830 TubercuList:Rv0491 KO:K07776 OMA:DVDSHTV
ProtClustDB:CLSK790554 EvolutionaryTrace:Q11156 Uniprot:Q11156
Length = 227
Score = 108 (43.1 bits), Expect = 0.00050, P = 0.00050
Identities = 33/113 (29%), Positives = 55/113 (48%)
Query: 2 GFSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVGLEMDLPVIMMCAHG 61
GF T AL ++ G DIV+ D+ +P M G + + + +PVIM+ A
Sbjct: 25 GFEATVVTDGPAAL--AEFDRAGADIVLLDLMLPGMSGTDVCKQLRARSSVPVIMVTARD 82
Query: 62 SKEVVMKGVTHDACDYLTKPVRIEELKNIWQHVVRKRKNERKDLEQSGSVEGG 114
S+ + G+ A DY+TKP EL + V+R+ ++ ++ G +E G
Sbjct: 83 SEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGGDDDSEMSD-GVLESG 134
>UNIPROTKB|Q0C0N5 [details] [associations]
symbol:ntrX "Sigma-54 dependent DNA-binding response
regulator" species:228405 "Hyphomonas neptunium ATCC 15444"
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PRINTS:PR01590
PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382 SMART:SM00448
GO:GO:0005524 GO:GO:0035556 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0017111 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
eggNOG:COG2204 HOGENOM:HOG000058489 InterPro:IPR025943
InterPro:IPR025944 PROSITE:PS00676 PROSITE:PS00688 EMBL:CP000158
GenomeReviews:CP000158_GR RefSeq:YP_760708.1
ProteinModelPortal:Q0C0N5 STRING:Q0C0N5 GeneID:4288435
KEGG:hne:HNE_2009 PATRIC:32216861 KO:K13599 OMA:NVIPFFV
ProtClustDB:CLSK862979 BioCyc:HNEP228405:GI69-2033-MONOMER
Uniprot:Q0C0N5
Length = 461
Score = 113 (44.8 bits), Expect = 0.00052, P = 0.00052
Identities = 29/97 (29%), Positives = 53/97 (54%)
Query: 2 GFSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPD--MDGFKLLE-LVGLEMDLPVIMMC 58
G++V + AE AL+ +R+ +VI DV + MDG LL+ L ++ LPVI++
Sbjct: 26 GYAVRTADTAERALEEVRSRTPR--LVILDVWLQGSGMDGLSLLKYLKSIDPILPVIVIS 83
Query: 59 AHGSKEVVMKGVTHDACDYLTKPVRIEELKNIWQHVV 95
HG+ E + + A D++ KP++ + L + + +
Sbjct: 84 GHGNIETAIAAIRRGAFDFIEKPIKADRLMLVVERAI 120
>TIGR_CMR|SO_4647 [details] [associations]
symbol:SO_4647 "DNA-binding response regulator"
species:211586 "Shewanella oneidensis MR-1" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] InterPro:IPR001789
InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622
EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034815 HSSP:P08402
KO:K07660 ProtClustDB:CLSK907750 RefSeq:NP_720163.1
ProteinModelPortal:Q8E8L6 GeneID:1172229 KEGG:son:SO_4647
PATRIC:23528955 OMA:FEYFMLH Uniprot:Q8E8L6
Length = 231
Score = 108 (43.1 bits), Expect = 0.00053, P = 0.00053
Identities = 26/86 (30%), Positives = 45/86 (52%)
Query: 25 YDIVISDVHMPDMDGFKLLELVGL-EMDLPVIMMCAHGSKEVVMKGVTHDACDYLTKPVR 83
YD I DV +P +DG L+ + E P++++ A S + ++G+ A DYLTKP
Sbjct: 45 YDAAIIDVGLPKLDGISLIRRIRQKERAFPILILTARDSWQDKVEGLDAGADDYLTKPFH 104
Query: 84 IEELKNIWQHVVRKRKNERKDLEQSG 109
EEL + ++R+ + + +G
Sbjct: 105 PEELVARLKALIRRSAGKASPIITNG 130
>TIGR_CMR|SPO_0710 [details] [associations]
symbol:SPO_0710 "DNA-binding response regulator ChvI"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0000156 "phosphorelay
response regulator activity" evidence=ISS] [GO:0000160
"phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486
PROSITE:PS50110 SMART:SM00448 SMART:SM00862 GO:GO:0006355
GO:GO:0035556 EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034819
RefSeq:YP_165964.1 ProteinModelPortal:Q5LVJ1 GeneID:3195446
KEGG:sil:SPO0710 PATRIC:23374691 KO:K14981 OMA:ETKVMER
ProtClustDB:CLSK864190 Uniprot:Q5LVJ1
Length = 234
Score = 108 (43.1 bits), Expect = 0.00055, P = 0.00055
Identities = 27/80 (33%), Positives = 41/80 (51%)
Query: 2 GFSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVGLEMDLPVIMMCAHG 61
GF V N + ALD NK D+ + D+ MP MDG LL+ + + +PVI + +
Sbjct: 25 GFEVETYNDGQAALDAF--NKKLPDMAVLDIKMPRMDGMDLLQRLRQKTQMPVIFLTSKD 82
Query: 62 SKEVVMKGVTHDACDYLTKP 81
+ + G+ A DY+ KP
Sbjct: 83 DEIDEVLGLRMGADDYVKKP 102
>TIGR_CMR|BA_0577 [details] [associations]
symbol:BA_0577 "response regulator" species:198094
"Bacillus anthracis str. Ames" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001789
InterPro:IPR024187 Pfam:PF00072 PIRSF:PIRSF006171 PROSITE:PS50110
SMART:SM00448 GO:GO:0005737 GO:GO:0006355 GO:GO:0035556
EMBL:AE016879 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GO:GO:0003677 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0009605 GO:GO:0001071
HOGENOM:HOG000034816 RefSeq:NP_843111.2 RefSeq:YP_026824.1
ProteinModelPortal:Q81VC0 DNASU:1087932
EnsemblBacteria:EBBACT00000008382 EnsemblBacteria:EBBACT00000024391
GeneID:1087932 GeneID:2849175 KEGG:ban:BA_0577 KEGG:bat:BAS0546
PATRIC:18778756 KO:K11615 ProtClustDB:CLSK915867
BioCyc:BANT260799:GJAJ-606-MONOMER Uniprot:Q81VC0
Length = 235
Score = 108 (43.1 bits), Expect = 0.00055, P = 0.00055
Identities = 30/112 (26%), Positives = 58/112 (51%)
Query: 2 GFSVTKC-NRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELV-GLEMDLPVIMMCA 59
GF + + N + A+++L ++ D+V+ D+ MP+ GF+LL + E ++ ++M+ A
Sbjct: 26 GFELVQAVNSIKSAIEVLEESR--IDLVLLDIFMPEETGFELLMYIRNQEKEIDIMMISA 83
Query: 60 HGSKEVVMKGVTHDACDYLTKPVRIEELKN---IWQHVVRKRKNERKDLEQS 108
+ K + + DYL KP E K I++ + K ++K + QS
Sbjct: 84 VHDMGSIKKALQYGVVDYLIKPFTFERFKEALTIYREKLTFMKEQQK-ISQS 134
>UNIPROTKB|Q0PBM2 [details] [associations]
symbol:cheA "Chemotaxis histidine kinase" species:192222
"Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819"
[GO:0005515 "protein binding" evidence=IPI] InterPro:IPR001789
InterPro:IPR002545 InterPro:IPR003594 InterPro:IPR004105
InterPro:IPR004358 InterPro:IPR008207 InterPro:IPR009082
Pfam:PF00072 Pfam:PF01584 Pfam:PF01627 Pfam:PF02518 Pfam:PF02895
PRINTS:PR00344 PROSITE:PS50110 PROSITE:PS50851 PROSITE:PS50894
SMART:SM00073 SMART:SM00260 SMART:SM00387 SMART:SM00448
InterPro:IPR005467 GO:GO:0005524 GO:GO:0005737 GO:GO:0006355
GO:GO:0035556 GO:GO:0006935 GO:GO:0023014 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0000155 Gene3D:3.30.565.10
SUPFAM:SSF55874 SUPFAM:SSF47384 PROSITE:PS50109 Gene3D:1.20.120.160
SUPFAM:SSF47226 KO:K03407 Gene3D:1.10.287.560 SUPFAM:SSF50341
EMBL:AL111168 GenomeReviews:AL111168_GR OMA:CDHGIED
ProtClustDB:CLSK872488 PIR:B81447 RefSeq:YP_002343725.1
ProteinModelPortal:Q0PBM2 IntAct:Q0PBM2 GeneID:904608
KEGG:cje:Cj0284c PATRIC:20057487 HOGENOM:HOG000255264
BioCyc:CJEJ192222:GJTS-263-MONOMER Uniprot:Q0PBM2
Length = 769
Score = 115 (45.5 bits), Expect = 0.00062, P = 0.00062
Identities = 26/93 (27%), Positives = 51/93 (54%)
Query: 1 MGFSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKL---LELVGLEMDLPVIMM 57
+G S+ + AL+++++ ++ D ++ D+ MP MDG+ L + +LP+I +
Sbjct: 669 LGVSLIEATNGVEALNIIKSGEHDIDAMLIDIEMPRMDGYTLAGEIRKYSKYRNLPLIAV 728
Query: 58 CAHGSKEVVMKGVTHDACDYLTKPVRIEELKNI 90
+ SK ++GV +Y+TKP E L+N+
Sbjct: 729 TSRTSKTDRLRGVEVGMTEYITKPYSPEYLENV 761
>UNIPROTKB|Q5HWI3 [details] [associations]
symbol:cheA "Chemotaxis protein CheA" species:195099
"Campylobacter jejuni RM1221" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
[GO:0016301 "kinase activity" evidence=ISS] InterPro:IPR001789
InterPro:IPR002545 InterPro:IPR003594 InterPro:IPR004105
InterPro:IPR004358 InterPro:IPR008207 InterPro:IPR009082
Pfam:PF00072 Pfam:PF01584 Pfam:PF01627 Pfam:PF02518 Pfam:PF02895
PRINTS:PR00344 PROSITE:PS50110 PROSITE:PS50851 PROSITE:PS50894
SMART:SM00073 SMART:SM00260 SMART:SM00387 SMART:SM00448
InterPro:IPR005467 GO:GO:0005524 GO:GO:0005737 GO:GO:0006355
GO:GO:0035556 GO:GO:0006935 GO:GO:0016301 GO:GO:0004871
EMBL:CP000025 GenomeReviews:CP000025_GR GO:GO:0023014 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784 GO:GO:0000155
Gene3D:3.30.565.10 SUPFAM:SSF55874 SUPFAM:SSF47384 PROSITE:PS50109
Gene3D:1.20.120.160 SUPFAM:SSF47226 KO:K03407 Gene3D:1.10.287.560
SUPFAM:SSF50341 OMA:CDHGIED ProtClustDB:CLSK872488
HOGENOM:HOG000255264 RefSeq:YP_178352.1 ProteinModelPortal:Q5HWI3
STRING:Q5HWI3 GeneID:3231094 KEGG:cjr:CJE0332 PATRIC:20042366
BioCyc:CJEJ195099:GJC0-337-MONOMER Uniprot:Q5HWI3
Length = 769
Score = 115 (45.5 bits), Expect = 0.00062, P = 0.00062
Identities = 26/93 (27%), Positives = 51/93 (54%)
Query: 1 MGFSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKL---LELVGLEMDLPVIMM 57
+G S+ + AL+++++ ++ D ++ D+ MP MDG+ L + +LP+I +
Sbjct: 669 LGVSLIEATNGVEALNIIKSGEHDIDAMLIDIEMPRMDGYTLAGEIRKYSKYRNLPLIAV 728
Query: 58 CAHGSKEVVMKGVTHDACDYLTKPVRIEELKNI 90
+ SK ++GV +Y+TKP E L+N+
Sbjct: 729 TSRTSKTDRLRGVEVGMTEYITKPYSPEYLENV 761
>TIGR_CMR|CJE_0332 [details] [associations]
symbol:CJE_0332 "chemotaxis protein CheA" species:195099
"Campylobacter jejuni RM1221" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
[GO:0016301 "kinase activity" evidence=ISS] InterPro:IPR001789
InterPro:IPR002545 InterPro:IPR003594 InterPro:IPR004105
InterPro:IPR004358 InterPro:IPR008207 InterPro:IPR009082
Pfam:PF00072 Pfam:PF01584 Pfam:PF01627 Pfam:PF02518 Pfam:PF02895
PRINTS:PR00344 PROSITE:PS50110 PROSITE:PS50851 PROSITE:PS50894
SMART:SM00073 SMART:SM00260 SMART:SM00387 SMART:SM00448
InterPro:IPR005467 GO:GO:0005524 GO:GO:0005737 GO:GO:0006355
GO:GO:0035556 GO:GO:0006935 GO:GO:0016301 GO:GO:0004871
EMBL:CP000025 GenomeReviews:CP000025_GR GO:GO:0023014 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784 GO:GO:0000155
Gene3D:3.30.565.10 SUPFAM:SSF55874 SUPFAM:SSF47384 PROSITE:PS50109
Gene3D:1.20.120.160 SUPFAM:SSF47226 KO:K03407 Gene3D:1.10.287.560
SUPFAM:SSF50341 OMA:CDHGIED ProtClustDB:CLSK872488
HOGENOM:HOG000255264 RefSeq:YP_178352.1 ProteinModelPortal:Q5HWI3
STRING:Q5HWI3 GeneID:3231094 KEGG:cjr:CJE0332 PATRIC:20042366
BioCyc:CJEJ195099:GJC0-337-MONOMER Uniprot:Q5HWI3
Length = 769
Score = 115 (45.5 bits), Expect = 0.00062, P = 0.00062
Identities = 26/93 (27%), Positives = 51/93 (54%)
Query: 1 MGFSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKL---LELVGLEMDLPVIMM 57
+G S+ + AL+++++ ++ D ++ D+ MP MDG+ L + +LP+I +
Sbjct: 669 LGVSLIEATNGVEALNIIKSGEHDIDAMLIDIEMPRMDGYTLAGEIRKYSKYRNLPLIAV 728
Query: 58 CAHGSKEVVMKGVTHDACDYLTKPVRIEELKNI 90
+ SK ++GV +Y+TKP E L+N+
Sbjct: 729 TSRTSKTDRLRGVEVGMTEYITKPYSPEYLENV 761
>TIGR_CMR|BA_1955 [details] [associations]
symbol:BA_1955 "DNA-binding response regulator"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0006355 GO:GO:0035556 EMBL:AE016879
EMBL:AE017334 GenomeReviews:AE016879_GR GenomeReviews:AE017334_GR
GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
HOGENOM:HOG000034819 HSSP:P08402 RefSeq:NP_844363.1
RefSeq:YP_018600.2 ProteinModelPortal:Q81RT3 DNASU:1085997
EnsemblBacteria:EBBACT00000011147 EnsemblBacteria:EBBACT00000016377
GeneID:1085997 GeneID:2817674 KEGG:ban:BA_1955 KEGG:bar:GBAA_1955
PATRIC:18781506 OMA:FLECEGF ProtClustDB:CLSK916430
BioCyc:BANT261594:GJ7F-1959-MONOMER Uniprot:Q81RT3
Length = 228
Score = 107 (42.7 bits), Expect = 0.00067, P = 0.00067
Identities = 35/102 (34%), Positives = 52/102 (50%)
Query: 15 LDML-RTNKNGYDIVISDVHMPDMDGFKLLELVGLEMDLPVIMMCAHGSKEVVMKGVTHD 73
LD L + N+ D+VI D+ MP+MDGF + + D+P++++ A G +KG
Sbjct: 39 LDALQKINQVKVDMVILDIMMPNMDGFDVCFELRKYYDIPILILTAKGETSQKVKGFHLG 98
Query: 74 ACDYLTKPVRIEELKNIWQHVVR-KRKNERKDLEQSGSVEGG 114
DYL KP EL VVR K +R + S S++ G
Sbjct: 99 TDDYLVKPFDPIEL------VVRVKALLKRYQITVSQSIQVG 134
>UNIPROTKB|O07776 [details] [associations]
symbol:tcrA "Transcriptional regulatory protein TcrA"
species:1773 "Mycobacterium tuberculosis" [GO:0000156 "phosphorelay
response regulator activity" evidence=IDA] [GO:0005886 "plasma
membrane" evidence=IDA] [GO:0035556 "intracellular signal
transduction" evidence=IDA] [GO:0070298 "negative regulation of
phosphorelay signal transduction system" evidence=IDA]
InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486
PROSITE:PS50110 SMART:SM00448 SMART:SM00862 GO:GO:0005886
GO:GO:0005737 GO:GO:0006355 GenomeReviews:AL123456_GR GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351 EMBL:BX842574
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
HOGENOM:HOG000034815 GO:GO:0070298 PIR:E70909 RefSeq:NP_215116.1
RefSeq:YP_006513938.1 HSSP:Q9WYN0 ProteinModelPortal:O07776
SMR:O07776 PRIDE:O07776 EnsemblBacteria:EBMYCT00000002096
GeneID:13318480 GeneID:887870 KEGG:mtu:Rv0602c KEGG:mtv:RVBD_0602c
PATRIC:18149834 TubercuList:Rv0602c KO:K02483
ProtClustDB:CLSK790622 Uniprot:O07776
Length = 253
Score = 108 (43.1 bits), Expect = 0.00067, P = 0.00067
Identities = 25/64 (39%), Positives = 38/64 (59%)
Query: 25 YDIVISDVHMPDMDGFKLL-ELVGLEMDLPVIMMCAHGSKEVVMKGVTHDACDYLTKPVR 83
YD V+ DV +P +DGF++ L + PV+M+ A G+ + G+ A DYLTKP
Sbjct: 67 YDAVVLDVMLPGIDGFEVCARLRRQRVWTPVLMLTARGAVTDRIAGLDGGADDYLTKPFN 126
Query: 84 IEEL 87
++EL
Sbjct: 127 LDEL 130
>UNIPROTKB|P08368 [details] [associations]
symbol:creB "CreB transcriptional regulator" species:83333
"Escherichia coli K-12" [GO:0000156 "phosphorelay response
regulator activity" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0035556
"intracellular signal transduction" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000160 "phosphorelay signal transduction system" evidence=IEA]
InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486
PROSITE:PS50110 SMART:SM00448 SMART:SM00862 GO:GO:0005737
GO:GO:0006355 GO:GO:0035556 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351 EMBL:U14003
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745
HOGENOM:HOG000034819 EMBL:M13608 PIR:B25038 RefSeq:NP_418815.1
RefSeq:YP_492528.1 ProteinModelPortal:P08368 SMR:P08368
DIP:DIP-9318N IntAct:P08368 EnsemblBacteria:EBESCT00000004341
EnsemblBacteria:EBESCT00000014955 GeneID:12934258 GeneID:948922
KEGG:ecj:Y75_p4282 KEGG:eco:b4398 PATRIC:32124414 EchoBASE:EB1201
EcoGene:EG11218 KO:K07663 OMA:CARVRTI ProtClustDB:PRK11083
BioCyc:EcoCyc:CREB-MONOMER BioCyc:ECOL316407:JW4361-MONOMER
Genevestigator:P08368 Uniprot:P08368
Length = 229
Score = 107 (42.7 bits), Expect = 0.00067, P = 0.00067
Identities = 30/87 (34%), Positives = 45/87 (51%)
Query: 2 GFSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLL-ELVGLEMDLPVIMMCAH 60
GF+V R LD R K D++I DV +PD+ GF+L +L+ L LPV+ + A
Sbjct: 27 GFAVEVFERGLPVLDKAR--KQVPDVMILDVGLPDISGFELCRQLLALHPALPVLFLTAR 84
Query: 61 GSKEVVMKGVTHDACDYLTKPVRIEEL 87
+ + G+ A DY+ KP E+
Sbjct: 85 SEEVDRLLGLEIGADDYVAKPFSPREV 111
>UNIPROTKB|Q74CN0 [details] [associations]
symbol:GSU1643 "Response receiver-modulated diguanylate
cyclase" species:243231 "Geobacter sulfurreducens PCA" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001054 InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 Pfam:PF00990 GO:GO:0006355
GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR
SUPFAM:SSF55073 GO:GO:0016849 GO:GO:0009190 InterPro:IPR000160
SMART:SM00267 TIGRFAMs:TIGR00254 PROSITE:PS50887 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HSSP:P06143 HOGENOM:HOG000167205
ProtClustDB:CLSK740862 RefSeq:NP_952694.1 ProteinModelPortal:Q74CN0
GeneID:2687340 KEGG:gsu:GSU1643 PATRIC:22026135 OMA:CIRIIAG
BioCyc:GSUL243231:GH27-1627-MONOMER Uniprot:Q74CN0
Length = 316
Score = 109 (43.4 bits), Expect = 0.00082, P = 0.00082
Identities = 31/76 (40%), Positives = 44/76 (57%)
Query: 16 DMLRTNKNGY-DIVISDVHMPDMDGFKLLELV---GLEMDLPVIMMCAHGSKEVVMKGVT 71
D L ++GY +VI+D MP MDG +L V GLE +I++ + SKE ++ G+
Sbjct: 44 DALARIQSGYFPLVITDWVMPVMDGPELCRAVRSLGLEHYTYLILLTSRDSKESIISGLE 103
Query: 72 HDACDYLTKPVRIEEL 87
A +YL KPV EEL
Sbjct: 104 AGADEYLVKPVTPEEL 119
>TIGR_CMR|GSU_1643 [details] [associations]
symbol:GSU_1643 "GGDEF/response regulator receiver domain
protein" species:243231 "Geobacter sulfurreducens PCA" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001054 InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 Pfam:PF00990 GO:GO:0006355
GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR
SUPFAM:SSF55073 GO:GO:0016849 GO:GO:0009190 InterPro:IPR000160
SMART:SM00267 TIGRFAMs:TIGR00254 PROSITE:PS50887 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HSSP:P06143 HOGENOM:HOG000167205
ProtClustDB:CLSK740862 RefSeq:NP_952694.1 ProteinModelPortal:Q74CN0
GeneID:2687340 KEGG:gsu:GSU1643 PATRIC:22026135 OMA:CIRIIAG
BioCyc:GSUL243231:GH27-1627-MONOMER Uniprot:Q74CN0
Length = 316
Score = 109 (43.4 bits), Expect = 0.00082, P = 0.00082
Identities = 31/76 (40%), Positives = 44/76 (57%)
Query: 16 DMLRTNKNGY-DIVISDVHMPDMDGFKLLELV---GLEMDLPVIMMCAHGSKEVVMKGVT 71
D L ++GY +VI+D MP MDG +L V GLE +I++ + SKE ++ G+
Sbjct: 44 DALARIQSGYFPLVITDWVMPVMDGPELCRAVRSLGLEHYTYLILLTSRDSKESIISGLE 103
Query: 72 HDACDYLTKPVRIEEL 87
A +YL KPV EEL
Sbjct: 104 AGADEYLVKPVTPEEL 119
>TIGR_CMR|SO_0622 [details] [associations]
symbol:SO_0622 "DNA-binding response regulator"
species:211586 "Shewanella oneidensis MR-1" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] InterPro:IPR001789
InterPro:IPR001867 InterPro:IPR016032 Pfam:PF00072 Pfam:PF00486
PROSITE:PS50110 SMART:SM00448 SMART:SM00862 GO:GO:0006355
GO:GO:0035556 GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0006351 GO:GO:0005622 EMBL:AE014299 GenomeReviews:AE014299_GR
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 SUPFAM:SSF46894
HOGENOM:HOG000034815 HSSP:Q9WYN0 RefSeq:NP_716255.1
ProteinModelPortal:Q8EJ51 GeneID:1168488 KEGG:son:SO_0622
PATRIC:23520932 OMA:PFHTQEL ProtClustDB:CLSK905847 Uniprot:Q8EJ51
Length = 224
Score = 106 (42.4 bits), Expect = 0.00085, P = 0.00085
Identities = 36/118 (30%), Positives = 51/118 (43%)
Query: 5 VTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLE-LVGLEMDLPVIMMCAHGSK 63
VT + D L + YD VI D+ +PD +G +LLE + PVIM+ A
Sbjct: 26 VTDITDKALEADYL-VKETQYDCVILDIGLPDGNGLELLEGWRNQGISTPVIMLTARSQW 84
Query: 64 EVVMKGVTHDACDYLTKPVRIEELKNIWQHVVRKR----KNERKDLEQSGSVEGGAQQ 117
++G A DYL KP +EL Q ++ + N K L G A+Q
Sbjct: 85 HEKVEGFNAGADDYLGKPFHAQELLARIQALIHRAHGRLNNPNKQLSYGGVTLDEAEQ 142
>TIGR_CMR|GSU_1316 [details] [associations]
symbol:GSU_1316 "response regulator" species:243231
"Geobacter sulfurreducens PCA" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR003018
InterPro:IPR001789 Pfam:PF00072 Pfam:PF13185 PROSITE:PS50110
SMART:SM00065 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 RefSeq:NP_952369.1
ProteinModelPortal:Q74DK0 DNASU:2685737 GeneID:2685737
KEGG:gsu:GSU1316 PATRIC:22025407 HOGENOM:HOG000276092 OMA:NMVLTDI
ProtClustDB:CLSK828294 BioCyc:GSUL243231:GH27-1295-MONOMER
Uniprot:Q74DK0
Length = 324
Score = 109 (43.4 bits), Expect = 0.00086, P = 0.00085
Identities = 31/105 (29%), Positives = 54/105 (51%)
Query: 2 GFSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVGLEM-DLPVIMMCAH 60
G+ VT E A+ N +DI+++D+++P M G LL+L+ DL V+++ ++
Sbjct: 30 GYIVTSVASGEEAVH--EVNAAPFDILVTDINLPGMSGLNLLKLLKDSFPDLEVVIVTSN 87
Query: 61 GSKEVVMKGVTHDACDYLTKPVRIEE-LKNIWQHVVRKRKNERKD 104
S +K + A D++ KPV L NI V K+ R++
Sbjct: 88 ASSFTAIKALRLGAYDFIIKPVDDPAILTNIVGRAVEKQSLTREN 132
>TIGR_CMR|BA_3661 [details] [associations]
symbol:BA_3661 "DNA-binding response regulator"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0006355 GO:GO:0035556 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034819 HSSP:P08402
RefSeq:NP_845926.1 RefSeq:YP_020295.1 RefSeq:YP_029652.1
ProteinModelPortal:Q81Y94 DNASU:1085996
EnsemblBacteria:EBBACT00000012587 EnsemblBacteria:EBBACT00000017515
EnsemblBacteria:EBBACT00000021805 GeneID:1085996 GeneID:2816214
GeneID:2848549 KEGG:ban:BA_3661 KEGG:bar:GBAA_3661 KEGG:bat:BAS3396
OMA:ENTMSLA ProtClustDB:CLSK917123
BioCyc:BANT260799:GJAJ-3457-MONOMER
BioCyc:BANT261594:GJ7F-3567-MONOMER Uniprot:Q81Y94
Length = 225
Score = 106 (42.4 bits), Expect = 0.00086, P = 0.00086
Identities = 21/80 (26%), Positives = 45/80 (56%)
Query: 2 GFSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVGLEMDLPVIMMCAHG 61
GF V + + AL++ ++ D+++ D+ +P++DG+ + + E +P+IM+ A
Sbjct: 26 GFEVIEAEDGKKALELFAEHE--IDLIMLDIMLPEIDGWSVCRRIRKESAVPIIMLTARS 83
Query: 62 SKEVVMKGVTHDACDYLTKP 81
++ + G A +Y+TKP
Sbjct: 84 DEDDTLLGFELGADEYVTKP 103
>TAIR|locus:2040282 [details] [associations]
symbol:RR3 "response regulator 3" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0009736 "cytokinin mediated
signaling pathway" evidence=RCA;IMP;TAS] [GO:0007623 "circadian
rhythm" evidence=RCA;IMP] [GO:0005515 "protein binding"
evidence=IPI] [GO:0010029 "regulation of seed germination"
evidence=RCA] [GO:0031537 "regulation of anthocyanin metabolic
process" evidence=RCA] [GO:0048831 "regulation of shoot system
development" evidence=RCA] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0005634 GO:GO:0009536
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0006355 GO:GO:0007623
GO:GO:0006351 GO:GO:0009736 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K14492 eggNOG:COG3706
EMBL:AB010917 EMBL:AC005662 EMBL:AY074643 IPI:IPI00535987
PIR:T48853 RefSeq:NP_181663.1 UniGene:At.244
ProteinModelPortal:O80365 SMR:O80365 IntAct:O80365 STRING:O80365
EnsemblPlants:AT2G41310.1 GeneID:818730 KEGG:ath:AT2G41310
GeneFarm:4125 TAIR:At2g41310 InParanoid:O80365 OMA:METESKF
PhylomeDB:O80365 ProtClustDB:CLSN2683767 Genevestigator:O80365
GermOnline:AT2G41310 Uniprot:O80365
Length = 225
Score = 106 (42.4 bits), Expect = 0.00086, P = 0.00086
Identities = 30/127 (23%), Positives = 63/127 (49%)
Query: 26 DIVISDVHMPDMDGFKLLELV---GLEMDLPVIMMCAHGSKEVVMKGVTHDACDYLTKPV 82
+++I+D MP M G+ LL+ V +PV++M + + + + A ++ KPV
Sbjct: 73 NLIITDYCMPGMTGYDLLKKVKESAAFRSIPVVIMSSENVPARISRCLEEGAEEFFLKPV 132
Query: 83 RIEELKNIWQHVVRKRKNERKDLEQSGSVEGGAQQPKPFEESDDSYSVNEGTSNSRKDEE 142
++ +L + H+++ + +K+ E+ ++E EE ++ SV E ++ E
Sbjct: 133 KLADLTKLKPHMMKTKL--KKESEKPVAIEEIVVSKPEIEEEEEESSVIEILPLHQEIES 190
Query: 143 EEAEKRL 149
E+ E L
Sbjct: 191 EQLEPML 197
>TIGR_CMR|GSU_2581 [details] [associations]
symbol:GSU_2581 "sigma-54 dependent transcriptional
regulator" species:243231 "Geobacter sulfurreducens PCA"
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PROSITE:PS50045
PROSITE:PS50110 SMART:SM00382 SMART:SM00448 GO:GO:0005524
GO:GO:0035556 GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000058489
InterPro:IPR025944 PROSITE:PS00688 HSSP:P06143 RefSeq:NP_953627.1
ProteinModelPortal:Q74A10 GeneID:2687775 KEGG:gsu:GSU2581
PATRIC:22028017 OMA:LTERIMA ProtClustDB:CLSK763211
BioCyc:GSUL243231:GH27-2558-MONOMER Uniprot:Q74A10
Length = 456
Score = 111 (44.1 bits), Expect = 0.00087, P = 0.00087
Identities = 37/106 (34%), Positives = 59/106 (55%)
Query: 2 GFS-VTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVGLEM-DLPVIMMCA 59
GF+ +T + A+ AL +L + D++ISD+ M M+G +LL+ V ++PVI++ A
Sbjct: 27 GFAPLTAVSGAQ-ALALLE--REHVDLLISDLIMEGMNGLELLDRVRERYPNVPVIVVTA 83
Query: 60 HGSKEVVMKGVTHDACDYLTKPVRIEELKNIWQ------HVVRKRK 99
GS E ++ + A DYL KP E L+ Q HVVR+ +
Sbjct: 84 RGSVESAVEAMRRGAYDYLAKPFNPEVLRITLQRALDYHHVVRENE 129
>UNIPROTKB|Q9KNN9 [details] [associations]
symbol:VC_2692 "Transcriptional regulator CpxR"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
InterPro:IPR016032 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0035556 GO:GO:0003677
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003700
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351 GO:GO:0005622
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 SUPFAM:SSF46894
KO:K07662 HSSP:P08402 PIR:B82046 RefSeq:NP_232320.1
ProteinModelPortal:Q9KNN9 DNASU:2615520 GeneID:2615520
KEGG:vch:VC2692 PATRIC:20084402 OMA:HEYGDIK ProtClustDB:CLSK874884
Uniprot:Q9KNN9
Length = 228
Score = 106 (42.4 bits), Expect = 0.00089, P = 0.00089
Identities = 28/99 (28%), Positives = 52/99 (52%)
Query: 2 GFSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVGLEMDLPVIMMCAHG 61
GF +++ N E L + + D+++ DV MP ++G + L+ + + PV+M+ A G
Sbjct: 25 GFEISQANDGEAGLAAV---SDEIDLILLDVMMPKLNGMETLKRLREKWATPVLMLTAKG 81
Query: 62 SKEVVMKGVTHDACDYLTKPVRIEELKNIWQHVVRKRKN 100
+ + G+ A DYL KP EL + ++R+ +N
Sbjct: 82 EEIDRVIGLELGADDYLPKPFSDRELLARIRAILRRTQN 120
>TIGR_CMR|VC_2692 [details] [associations]
symbol:VC_2692 "transcriptional regulator CpxR" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
InterPro:IPR016032 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0035556 GO:GO:0003677
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003700
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351 GO:GO:0005622
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 SUPFAM:SSF46894
KO:K07662 HSSP:P08402 PIR:B82046 RefSeq:NP_232320.1
ProteinModelPortal:Q9KNN9 DNASU:2615520 GeneID:2615520
KEGG:vch:VC2692 PATRIC:20084402 OMA:HEYGDIK ProtClustDB:CLSK874884
Uniprot:Q9KNN9
Length = 228
Score = 106 (42.4 bits), Expect = 0.00089, P = 0.00089
Identities = 28/99 (28%), Positives = 52/99 (52%)
Query: 2 GFSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVGLEMDLPVIMMCAHG 61
GF +++ N E L + + D+++ DV MP ++G + L+ + + PV+M+ A G
Sbjct: 25 GFEISQANDGEAGLAAV---SDEIDLILLDVMMPKLNGMETLKRLREKWATPVLMLTAKG 81
Query: 62 SKEVVMKGVTHDACDYLTKPVRIEELKNIWQHVVRKRKN 100
+ + G+ A DYL KP EL + ++R+ +N
Sbjct: 82 EEIDRVIGLELGADDYLPKPFSDRELLARIRAILRRTQN 120
>TIGR_CMR|BA_1975 [details] [associations]
symbol:BA_1975 "DNA-binding response regulator"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0006355 GO:GO:0035556 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034819 HSSP:P08402
RefSeq:NP_844381.1 RefSeq:YP_018619.1 RefSeq:YP_028096.1
ProteinModelPortal:Q81RR5 DNASU:1085933
EnsemblBacteria:EBBACT00000010129 EnsemblBacteria:EBBACT00000016639
EnsemblBacteria:EBBACT00000022009 GeneID:1085933 GeneID:2816740
GeneID:2849742 KEGG:ban:BA_1975 KEGG:bar:GBAA_1975 KEGG:bat:BAS1832
OMA:TARVQDE ProtClustDB:CLSK916436
BioCyc:BANT260799:GJAJ-1901-MONOMER
BioCyc:BANT261594:GJ7F-1976-MONOMER Uniprot:Q81RR5
Length = 229
Score = 106 (42.4 bits), Expect = 0.00090, P = 0.00090
Identities = 30/97 (30%), Positives = 52/97 (53%)
Query: 2 GFSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVGLE-MDLPVIMMCAH 60
GF V + + E AL +L ++ D+ + DV +P MDGF++ + + E + +IM+ A
Sbjct: 25 GFYVLEASTGEEALQILC--EHTVDVALLDVMLPGMDGFQVCKAIREENKKIGIIMLTAR 82
Query: 61 GSKEVVMKGVTHDACDYLTKPVRIEELKNIWQHVVRK 97
E ++G+ A DY+ KP EL Q ++R+
Sbjct: 83 VQNEDKVQGLGIGADDYIAKPFSPVELTARIQSLLRR 119
>TIGR_CMR|BA_5068 [details] [associations]
symbol:BA_5068 "DNA-binding response regulator"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0006355 GO:GO:0035556 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034819 HSSP:Q9WYN0
RefSeq:NP_847259.1 RefSeq:YP_021717.1 RefSeq:YP_030951.1
ProteinModelPortal:Q81KD2 DNASU:1084352
EnsemblBacteria:EBBACT00000008736 EnsemblBacteria:EBBACT00000013851
EnsemblBacteria:EBBACT00000021438 GeneID:1084352 GeneID:2816207
GeneID:2851510 KEGG:ban:BA_5068 KEGG:bar:GBAA_5068 KEGG:bat:BAS4707
OMA:FMKNQGI ProtClustDB:CLSK917509
BioCyc:BANT260799:GJAJ-4761-MONOMER
BioCyc:BANT261594:GJ7F-4923-MONOMER Uniprot:Q81KD2
Length = 229
Score = 106 (42.4 bits), Expect = 0.00090, P = 0.00090
Identities = 39/154 (25%), Positives = 71/154 (46%)
Query: 26 DIVISDVHMPDMDGFKLLELVGLEMDLPVIMMCAHGSKEVVMKGVTHDACDYLTKPVRIE 85
D+VI D+ +P++DG+ + + ++P+IM+ A ++ + G A DY+TKP
Sbjct: 48 DLVILDIMLPELDGWSVCRRIRKTSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPP 107
Query: 86 ELKNIWQHVVRKRKNERKDLEQSGSVEG--GAQQPKPFEESDDSYSVNEGTSNSRKDEEE 143
L + ++ RK ++ LE + G P + +VN+ N E E
Sbjct: 108 ILLARAKRLLESRKVTKQLLENEDDILSIHGIHVHFPSR----TVTVNKTDINLTHTEFE 163
Query: 144 EAEKRLKKPRLVWSVELHQQFVSAVKELGFDKAG 177
+K P +V + E Q +S + G++ AG
Sbjct: 164 ILAYFMKNPGIVLTRE---QLISRI--WGYEFAG 192
>UNIPROTKB|Q74CL9 [details] [associations]
symbol:GSU1654 "Response receiver-modulated cyclic
diguanylate phosphodiesterase" species:243231 "Geobacter
sulfurreducens PCA" [GO:0003674 "molecular_function" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR001789
InterPro:IPR003607 InterPro:IPR006674 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 SMART:SM00471 GO:GO:0006355 GO:GO:0035556
GO:GO:0046872 GO:GO:0008152 GO:GO:0005622 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 GO:GO:0008081 Gene3D:1.10.3210.10
InterPro:IPR006675 TIGRFAMs:TIGR00277 HOGENOM:HOG000266481
RefSeq:NP_952705.1 ProteinModelPortal:Q74CL9 GeneID:2687011
KEGG:gsu:GSU1654 PATRIC:22026155 OMA:IVLSHQE ProtClustDB:CLSK828468
BioCyc:GSUL243231:GH27-1639-MONOMER Uniprot:Q74CL9
Length = 349
Score = 109 (43.4 bits), Expect = 0.00098, P = 0.00098
Identities = 36/128 (28%), Positives = 62/128 (48%)
Query: 2 GFSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLL-ELVGLEMDLPVIMMCAH 60
G+ + A+ A D+L N+ ++ + D+ MP G LL E+ + D V+M+ A
Sbjct: 26 GYDCFQAGSADEARDVLLNNR--VELALLDIMMPGTSGVDLLKEIKKISADTVVLMVTAI 83
Query: 61 GSKEVVMKGVTHDACDYLTKPVRIEE----LKNIWQH---VVRKRK---N-ERKDLEQSG 109
E M+ + A DY+ KP IE +KN + ++ R+ N E+K LEQ+G
Sbjct: 84 SDMETAMRCIHLGADDYILKPFDIERVLLTIKNSLEKQRLLIENREYQANLEKKVLEQTG 143
Query: 110 SVEGGAQQ 117
+ ++
Sbjct: 144 QIRSAMEE 151
>TIGR_CMR|GSU_1654 [details] [associations]
symbol:GSU_1654 "response regulator, putative"
species:243231 "Geobacter sulfurreducens PCA" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001789 InterPro:IPR003607
InterPro:IPR006674 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
SMART:SM00471 GO:GO:0006355 GO:GO:0035556 GO:GO:0046872
GO:GO:0008152 GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0008081
Gene3D:1.10.3210.10 InterPro:IPR006675 TIGRFAMs:TIGR00277
HOGENOM:HOG000266481 RefSeq:NP_952705.1 ProteinModelPortal:Q74CL9
GeneID:2687011 KEGG:gsu:GSU1654 PATRIC:22026155 OMA:IVLSHQE
ProtClustDB:CLSK828468 BioCyc:GSUL243231:GH27-1639-MONOMER
Uniprot:Q74CL9
Length = 349
Score = 109 (43.4 bits), Expect = 0.00098, P = 0.00098
Identities = 36/128 (28%), Positives = 62/128 (48%)
Query: 2 GFSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLL-ELVGLEMDLPVIMMCAH 60
G+ + A+ A D+L N+ ++ + D+ MP G LL E+ + D V+M+ A
Sbjct: 26 GYDCFQAGSADEARDVLLNNR--VELALLDIMMPGTSGVDLLKEIKKISADTVVLMVTAI 83
Query: 61 GSKEVVMKGVTHDACDYLTKPVRIEE----LKNIWQH---VVRKRK---N-ERKDLEQSG 109
E M+ + A DY+ KP IE +KN + ++ R+ N E+K LEQ+G
Sbjct: 84 SDMETAMRCIHLGADDYILKPFDIERVLLTIKNSLEKQRLLIENREYQANLEKKVLEQTG 143
Query: 110 SVEGGAQQ 117
+ ++
Sbjct: 144 QIRSAMEE 151
>UNIPROTKB|Q9KU36 [details] [associations]
symbol:VC_0693 "Uncharacterized response regulatory protein
VC_0693" species:243277 "Vibrio cholerae O1 biovar El Tor str.
N16961" [GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] [GO:0035556 "intracellular signal transduction"
evidence=ISS] InterPro:IPR001789 InterPro:IPR007492 Pfam:PF00072
Pfam:PF04397 PROSITE:PS50110 PROSITE:PS50930 SMART:SM00448
SMART:SM00850 GO:GO:0006355 GO:GO:0003677 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0006351 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG3279 KO:K02477
ProtClustDB:PRK11697 PIR:B82292 RefSeq:NP_230342.1
ProteinModelPortal:Q9KU36 DNASU:2615482 GeneID:2615482
KEGG:vch:VC0693 PATRIC:20080501 OMA:ENESDIT Uniprot:Q9KU36
Length = 237
Score = 106 (42.4 bits), Expect = 0.00099, P = 0.00099
Identities = 41/170 (24%), Positives = 79/170 (46%)
Query: 10 RAEIALDMLRT-NKNGYDIVISDVHMPDMDGFKLLELVGLEMDLPVIMMCAHGSKEVVMK 68
+A A++ L+ N+ D+V D+ MP + G +LL ++ E V+ + A+ + ++
Sbjct: 32 QASNAIEGLKKINQLKPDVVFLDIQMPQISGIELLSMLDPETMPEVVFVTAYD--QYALQ 89
Query: 69 GVTHDACDYLTKPVRIEELKNIWQHVVRK-RKNERKDLEQSGSVE---GGAQQPK--PFE 122
+A DYL KPV E L Q ++R+ +K++ L Q + G + P
Sbjct: 90 AFEDNAFDYLLKPVDTERLAKTVQRLLRQHKKSDYSPLTQPSLDQIPCTGLNRIVLLPIN 149
Query: 123 ESDDSYSVNEGTSNSRKDEEEEAEKRLKK-PRLVWSVELHQQFVSAVKEL 171
E + +YS G + ++ ++ LK V H+Q++ +K +
Sbjct: 150 EVEFAYSDISGVNVQTAQQKATSQLTLKVLEEKTALVRCHRQYLVNLKAI 199
>TIGR_CMR|VC_0693 [details] [associations]
symbol:VC_0693 "response regulator" species:686 "Vibrio
cholerae O1 biovar El Tor" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001789
InterPro:IPR007492 Pfam:PF00072 Pfam:PF04397 PROSITE:PS50110
PROSITE:PS50930 SMART:SM00448 SMART:SM00850 GO:GO:0006355
GO:GO:0003677 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0006351
GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
eggNOG:COG3279 KO:K02477 ProtClustDB:PRK11697 PIR:B82292
RefSeq:NP_230342.1 ProteinModelPortal:Q9KU36 DNASU:2615482
GeneID:2615482 KEGG:vch:VC0693 PATRIC:20080501 OMA:ENESDIT
Uniprot:Q9KU36
Length = 237
Score = 106 (42.4 bits), Expect = 0.00099, P = 0.00099
Identities = 41/170 (24%), Positives = 79/170 (46%)
Query: 10 RAEIALDMLRT-NKNGYDIVISDVHMPDMDGFKLLELVGLEMDLPVIMMCAHGSKEVVMK 68
+A A++ L+ N+ D+V D+ MP + G +LL ++ E V+ + A+ + ++
Sbjct: 32 QASNAIEGLKKINQLKPDVVFLDIQMPQISGIELLSMLDPETMPEVVFVTAYD--QYALQ 89
Query: 69 GVTHDACDYLTKPVRIEELKNIWQHVVRK-RKNERKDLEQSGSVE---GGAQQPK--PFE 122
+A DYL KPV E L Q ++R+ +K++ L Q + G + P
Sbjct: 90 AFEDNAFDYLLKPVDTERLAKTVQRLLRQHKKSDYSPLTQPSLDQIPCTGLNRIVLLPIN 149
Query: 123 ESDDSYSVNEGTSNSRKDEEEEAEKRLKK-PRLVWSVELHQQFVSAVKEL 171
E + +YS G + ++ ++ LK V H+Q++ +K +
Sbjct: 150 EVEFAYSDISGVNVQTAQQKATSQLTLKVLEEKTALVRCHRQYLVNLKAI 199
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.314 0.132 0.377 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 226 226 0.00078 113 3 11 23 0.45 33
32 0.41 36
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 243
No. of states in DFA: 598 (64 KB)
Total size of DFA: 180 KB (2104 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 28.83u 0.16s 28.99t Elapsed: 00:00:01
Total cpu time: 28.85u 0.16s 29.01t Elapsed: 00:00:01
Start: Fri May 10 06:13:41 2013 End: Fri May 10 06:13:42 2013
WARNINGS ISSUED: 1