BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027234
(226 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1IRZ|A Chain A, Solution Structure Of Arr10-B Belonging To The Garp Family
Of Plant Myb-Related Dna Binding Motifs Of The
Arabidopsis Response Regulators
Length = 64
Score = 81.3 bits (199), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 37/61 (60%), Positives = 50/61 (81%)
Query: 150 KKPRLVWSVELHQQFVSAVKELGFDKAGPKKILELMNIPGLTRENVASHLQKHRLYLSRL 209
KKPR++W+ ELH +F++AV LG ++A PKKIL+LMN+ LTRENVASHLQK R+ L ++
Sbjct: 4 KKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFRVALKKV 63
Query: 210 S 210
S
Sbjct: 64 S 64
>pdb|1L5Y|A Chain A, Crystal Structure Of Mg2+ / Bef3-bound Receiver Domain Of
Sinorhizobium Meliloti Dctd
pdb|1L5Y|B Chain B, Crystal Structure Of Mg2+ / Bef3-bound Receiver Domain Of
Sinorhizobium Meliloti Dctd
pdb|1L5Z|A Chain A, Crystal Structure Of The E121k Substitution Of The
Receiver Domain Of Sinorhizobium Meliloti Dctd
Length = 155
Score = 61.2 bits (147), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 54/99 (54%), Gaps = 3/99 (3%)
Query: 2 GFSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLL-ELVGLEMDLPVIMMCAH 60
GF+V+ A AL L + G IVISD+ MP MDG L +++ L+ DLP+I++ H
Sbjct: 27 GFTVSSFASATEALAGLSADFAG--IVISDIRMPGMDGLALFRKILALDPDLPMILVTGH 84
Query: 61 GSKEVVMKGVTHDACDYLTKPVRIEELKNIWQHVVRKRK 99
G + ++ + A D++ KP + L + +KR+
Sbjct: 85 GDIPMAVQAIQDGAYDFIAKPFAADRLVQSARRAEKKRR 123
>pdb|1QKK|A Chain A, Crystal Structure Of The Receiver Domain And Linker Region
Of Dctd From Sinorhizobium Meliloti
Length = 155
Score = 60.5 bits (145), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 53/99 (53%), Gaps = 3/99 (3%)
Query: 2 GFSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLL-ELVGLEMDLPVIMMCAH 60
GF+V+ A AL L + G IVISD+ MP MDG L +++ L+ DLP+I++ H
Sbjct: 27 GFTVSSFASATEALAGLSADFAG--IVISDIRMPGMDGLALFRKILALDPDLPMILVTGH 84
Query: 61 GSKEVVMKGVTHDACDYLTKPVRIEELKNIWQHVVRKRK 99
G + ++ + A D++ KP + L + KR+
Sbjct: 85 GDIPMAVQAIQDGAYDFIAKPFAADRLVQSARRAEEKRR 123
>pdb|3FFX|A Chain A, Crystal Structure Of Chey Triple Mutant F14e, N59r, E89h
Complexed With Bef3- And Mn2+
pdb|3FFX|B Chain B, Crystal Structure Of Chey Triple Mutant F14e, N59r, E89h
Complexed With Bef3- And Mn2+
Length = 128
Score = 54.7 bits (130), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 49/101 (48%), Gaps = 6/101 (5%)
Query: 1 MGFSVTKCNRAEIALDML-RTNKNGYDIVISDVHMPDMDGFKLLELV---GLEMDLPVIM 56
+GF+ AE +D L + GY VISD MP+MDG +LL+ + G LPV+M
Sbjct: 27 LGFN--NVEEAEDGVDALNKLQAGGYGFVISDWRMPNMDGLELLKTIRADGAMSALPVLM 84
Query: 57 MCAHGSKEVVMKGVTHDACDYLTKPVRIEELKNIWQHVVRK 97
+ AH KE ++ A Y+ KP L+ + K
Sbjct: 85 VTAHAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFEK 125
>pdb|1YMV|A Chain A, Signal Transduction Protein Chey Mutant With Phe 14
Replaced By Gly, Ser 15 Replaced By Gly, And Met 17
Replaced By Gly
Length = 129
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 49/101 (48%), Gaps = 6/101 (5%)
Query: 1 MGFSVTKCNRAEIALDML-RTNKNGYDIVISDVHMPDMDGFKLLELV---GLEMDLPVIM 56
+GF+ AE +D L + GY VISD +MP+MDG +LL+ + G LPV+M
Sbjct: 28 LGFN--NVEEAEDGVDALNKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLM 85
Query: 57 MCAHGSKEVVMKGVTHDACDYLTKPVRIEELKNIWQHVVRK 97
+ A KE ++ A Y+ KP L+ + K
Sbjct: 86 VTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFEK 126
>pdb|3FFW|A Chain A, Crystal Structure Of Chey Triple Mutant F14q, N59k, E89y
Complexed With Bef3- And Mn2+
pdb|3FFW|B Chain B, Crystal Structure Of Chey Triple Mutant F14q, N59k, E89y
Complexed With Bef3- And Mn2+
Length = 128
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 49/101 (48%), Gaps = 6/101 (5%)
Query: 1 MGFSVTKCNRAEIALDML-RTNKNGYDIVISDVHMPDMDGFKLLELV---GLEMDLPVIM 56
+GF+ AE +D L + GY VISD MP+MDG +LL+ + G LPV+M
Sbjct: 27 LGFN--NVEEAEDGVDALNKLQAGGYGFVISDWKMPNMDGLELLKTIRADGAMSALPVLM 84
Query: 57 MCAHGSKEVVMKGVTHDACDYLTKPVRIEELKNIWQHVVRK 97
+ A+ KE ++ A Y+ KP L+ + K
Sbjct: 85 VTAYAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFEK 125
>pdb|1HEY|A Chain A, Investigating The Structural Determinants Of The P21-Like
Triphosphate And Mg2+ Binding Site
Length = 128
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 49/101 (48%), Gaps = 6/101 (5%)
Query: 1 MGFSVTKCNRAEIALDML-RTNKNGYDIVISDVHMPDMDGFKLLELV---GLEMDLPVIM 56
+GF+ AE +D L + GY VISD +MP+MDG +LL+ + G LPV+M
Sbjct: 27 LGFN--NVEDAEDGVDALNKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLM 84
Query: 57 MCAHGSKEVVMKGVTHDACDYLTKPVRIEELKNIWQHVVRK 97
+ A KE ++ A Y+ KP L+ + K
Sbjct: 85 VTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFEK 125
>pdb|1D4Z|A Chain A, Crystal Structure Of Chey-95iv, A Hyperactive Chey Mutant
Length = 128
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 49/101 (48%), Gaps = 6/101 (5%)
Query: 1 MGFSVTKCNRAEIALDML-RTNKNGYDIVISDVHMPDMDGFKLLELV---GLEMDLPVIM 56
+GF+ AE +D L + GY VISD +MP+MDG +LL+ + G LPV+M
Sbjct: 27 LGFN--NVEEAEDGVDALNKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLM 84
Query: 57 MCAHGSKEVVMKGVTHDACDYLTKPVRIEELKNIWQHVVRK 97
+ A KE V+ A Y+ KP L+ + K
Sbjct: 85 VTAEAKKENVIAAAQAGASGYVVKPFTAATLEEKLNKIFEK 125
>pdb|1YMU|A Chain A, Signal Transduction Protein Chey Mutant With Met 17
Replaced By Gly (M17g)
pdb|1YMU|B Chain B, Signal Transduction Protein Chey Mutant With Met 17
Replaced By Gly (M17g)
Length = 130
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 49/101 (48%), Gaps = 6/101 (5%)
Query: 1 MGFSVTKCNRAEIALDML-RTNKNGYDIVISDVHMPDMDGFKLLELV---GLEMDLPVIM 56
+GF+ AE +D L + GY VISD +MP+MDG +LL+ + G LPV+M
Sbjct: 29 LGFN--NVEEAEDGVDALNKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLM 86
Query: 57 MCAHGSKEVVMKGVTHDACDYLTKPVRIEELKNIWQHVVRK 97
+ A KE ++ A Y+ KP L+ + K
Sbjct: 87 VTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFEK 127
>pdb|1CYE|A Chain A, Three Dimensional Structure Of Chemotactic Che Y Protein
In Aqueous Solution By Nuclear Magnetic Resonance
Methods
Length = 129
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 49/101 (48%), Gaps = 6/101 (5%)
Query: 1 MGFSVTKCNRAEIALDML-RTNKNGYDIVISDVHMPDMDGFKLLELV---GLEMDLPVIM 56
+GF+ AE +D L + GY VISD +MP+MDG +LL+ + G LPV+M
Sbjct: 28 LGFN--NVEEAEDGVDALNKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLM 85
Query: 57 MCAHGSKEVVMKGVTHDACDYLTKPVRIEELKNIWQHVVRK 97
+ A KE ++ A Y+ KP L+ + K
Sbjct: 86 VTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFEK 126
>pdb|1AB5|A Chain A, Structure Of Chey Mutant F14n, V21t
pdb|1AB5|B Chain B, Structure Of Chey Mutant F14n, V21t
Length = 125
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 49/101 (48%), Gaps = 6/101 (5%)
Query: 1 MGFSVTKCNRAEIALDML-RTNKNGYDIVISDVHMPDMDGFKLLELV---GLEMDLPVIM 56
+GF+ AE +D L + GY VISD +MP+MDG +LL+ + G LPV+M
Sbjct: 24 LGFN--NVEEAEDGVDALNKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLM 81
Query: 57 MCAHGSKEVVMKGVTHDACDYLTKPVRIEELKNIWQHVVRK 97
+ A KE ++ A Y+ KP L+ + K
Sbjct: 82 VTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFEK 122
>pdb|1EHC|A Chain A, Structure Of Signal Transduction Protein Chey
Length = 128
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 49/101 (48%), Gaps = 6/101 (5%)
Query: 1 MGFSVTKCNRAEIALDML-RTNKNGYDIVISDVHMPDMDGFKLLELV---GLEMDLPVIM 56
+GF+ AE +D L + GY VISD +MP+MDG +LL+ + G LPV+M
Sbjct: 27 LGFN--NVEEAEDGVDALNKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLM 84
Query: 57 MCAHGSKEVVMKGVTHDACDYLTKPVRIEELKNIWQHVVRK 97
+ A KE ++ A Y+ KP L+ + K
Sbjct: 85 VTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFEK 125
>pdb|3FFT|A Chain A, Crystal Structure Of Chey Double Mutant F14e, E89r
Complexed With Bef3- And Mn2+
pdb|3FFT|B Chain B, Crystal Structure Of Chey Double Mutant F14e, E89r
Complexed With Bef3- And Mn2+
Length = 128
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 49/101 (48%), Gaps = 6/101 (5%)
Query: 1 MGFSVTKCNRAEIALDML-RTNKNGYDIVISDVHMPDMDGFKLLELV---GLEMDLPVIM 56
+GF+ AE +D L + GY VISD +MP+MDG +LL+ + G LPV+M
Sbjct: 27 LGFN--NVEEAEDGVDALNKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLM 84
Query: 57 MCAHGSKEVVMKGVTHDACDYLTKPVRIEELKNIWQHVVRK 97
+ A KE ++ A Y+ KP L+ + K
Sbjct: 85 VTARAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFEK 125
>pdb|1E6L|A Chain A, Two-Component Signal Transduction System D13a Mutant Of
Chey
Length = 127
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 49/101 (48%), Gaps = 6/101 (5%)
Query: 1 MGFSVTKCNRAEIALDML-RTNKNGYDIVISDVHMPDMDGFKLLELV---GLEMDLPVIM 56
+GF+ AE +D L + GY VISD +MP+MDG +LL+ + G LPV+M
Sbjct: 26 LGFN--NVEEAEDGVDALNKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLM 83
Query: 57 MCAHGSKEVVMKGVTHDACDYLTKPVRIEELKNIWQHVVRK 97
+ A KE ++ A Y+ KP L+ + K
Sbjct: 84 VTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFEK 124
>pdb|1EAY|A Chain A, Chey-Binding (P2) Domain Of Chea In Complex With Chey From
Escherichia Coli
pdb|1EAY|B Chain B, Chey-Binding (P2) Domain Of Chea In Complex With Chey From
Escherichia Coli
pdb|1A0O|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1A0O|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1A0O|E Chain E, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1A0O|G Chain G, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1BDJ|A Chain A, Complex Structure Of Hpt Domain And Chey
pdb|1F4V|A Chain A, Crystal Structure Of Activated Chey Bound To The
N-Terminus Of Flim
pdb|1F4V|B Chain B, Crystal Structure Of Activated Chey Bound To The
N-Terminus Of Flim
pdb|1F4V|C Chain C, Crystal Structure Of Activated Chey Bound To The
N-Terminus Of Flim
pdb|1FFG|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey At 2.1 A
Resolution
pdb|1FFG|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey At 2.1 A
Resolution
pdb|1FFS|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey From
Crystals Soaked In Acetyl Phosphate
pdb|1FFS|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey From
Crystals Soaked In Acetyl Phosphate
pdb|1FFW|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey With A
Bound Imido Diphosphate
pdb|1FFW|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey With A
Bound Imido Diphosphate
pdb|1FQW|A Chain A, Crystal Structure Of Activated Chey
pdb|1FQW|B Chain B, Crystal Structure Of Activated Chey
pdb|2B1J|A Chain A, Crystal Structure Of Unphosphorylated Chey Bound To The N-
Terminus Of Flim
pdb|2B1J|B Chain B, Crystal Structure Of Unphosphorylated Chey Bound To The N-
Terminus Of Flim
pdb|1CHN|A Chain A, Magnesium Binding To The Bacterial Chemotaxis Protein Chey
Results In Large Conformational Changes Involving Its
Functional Surface
pdb|3CHY|A Chain A, Crystal Structure Of Escherichia Coli Chey Refined At 1.7-
Angstrom Resolution
pdb|2LP4|Y Chain Y, Solution Structure Of P1-CheyP2 COMPLEX IN BACTERIAL
CHEMOTAXIS
Length = 128
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 49/101 (48%), Gaps = 6/101 (5%)
Query: 1 MGFSVTKCNRAEIALDML-RTNKNGYDIVISDVHMPDMDGFKLLELV---GLEMDLPVIM 56
+GF+ AE +D L + GY VISD +MP+MDG +LL+ + G LPV+M
Sbjct: 27 LGFN--NVEEAEDGVDALNKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLM 84
Query: 57 MCAHGSKEVVMKGVTHDACDYLTKPVRIEELKNIWQHVVRK 97
+ A KE ++ A Y+ KP L+ + K
Sbjct: 85 VTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFEK 125
>pdb|3RVN|A Chain A, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89y
pdb|3RVN|B Chain B, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89y
pdb|3RVO|A Chain A, Structure Of Chey-Mn2+ Complex With Substitutions At 59
And 89: N59d E89y
Length = 132
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 49/101 (48%), Gaps = 6/101 (5%)
Query: 1 MGFSVTKCNRAEIALDML-RTNKNGYDIVISDVHMPDMDGFKLLELV---GLEMDLPVIM 56
+GF+ AE +D L + GY VISD MP+MDG +LL+ + G LPV+M
Sbjct: 31 LGFN--NVEEAEDGVDALNKLQAGGYGFVISDWDMPNMDGLELLKTIRADGAMSALPVLM 88
Query: 57 MCAHGSKEVVMKGVTHDACDYLTKPVRIEELKNIWQHVVRK 97
+ A+ KE ++ A Y+ KP L+ + K
Sbjct: 89 VTAYAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFEK 129
>pdb|1E6K|A Chain A, Two-Component Signal Transduction System D12a Mutant Of
Chey
Length = 130
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 49/101 (48%), Gaps = 6/101 (5%)
Query: 1 MGFSVTKCNRAEIALDML-RTNKNGYDIVISDVHMPDMDGFKLLELV---GLEMDLPVIM 56
+GF+ AE +D L + GY VISD +MP+MDG +LL+ + G LPV+M
Sbjct: 29 LGFN--NVEEAEDGVDALNKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLM 86
Query: 57 MCAHGSKEVVMKGVTHDACDYLTKPVRIEELKNIWQHVVRK 97
+ A KE ++ A Y+ KP L+ + K
Sbjct: 87 VTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFEK 127
>pdb|1CEY|A Chain A, Assignments, Secondary Structure, Global Fold, And
Dynamics Of Chemotaxis Y Protein Using Three-And
Four-Dimensional Heteronuclear (13c,15n) Nmr
Spectroscopy
Length = 128
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 49/101 (48%), Gaps = 6/101 (5%)
Query: 1 MGFSVTKCNRAEIALDML-RTNKNGYDIVISDVHMPDMDGFKLLELV---GLEMDLPVIM 56
+GF+ AE +D L + GY VISD +MP+MDG +LL+ + G LPV+M
Sbjct: 27 LGFN--NVEEAEDGVDALNKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLM 84
Query: 57 MCAHGSKEVVMKGVTHDACDYLTKPVRIEELKNIWQHVVRK 97
+ A KE ++ A Y+ KP L+ + K
Sbjct: 85 VTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFEK 125
>pdb|1DJM|A Chain A, Solution Structure Of Bef3-Activated Chey From Escherichia
Coli
pdb|1KMI|Y Chain Y, Crystal Structure Of An E.Coli Chemotaxis Protein, Chez
Length = 129
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 49/101 (48%), Gaps = 6/101 (5%)
Query: 1 MGFSVTKCNRAEIALDML-RTNKNGYDIVISDVHMPDMDGFKLLELV---GLEMDLPVIM 56
+GF+ AE +D L + GY VISD +MP+MDG +LL+ + G LPV+M
Sbjct: 28 LGFN--NVEEAEDGVDALNKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLM 85
Query: 57 MCAHGSKEVVMKGVTHDACDYLTKPVRIEELKNIWQHVVRK 97
+ A KE ++ A Y+ KP L+ + K
Sbjct: 86 VTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFEK 126
>pdb|1VLZ|A Chain A, Uncoupled Phosphorylation And Activation In Bacterial
Chemotaxis: The 2.1 Angstrom Structure Of A Threonine To
Isoleucine Mutant At Position 87 Of Chey
pdb|1VLZ|B Chain B, Uncoupled Phosphorylation And Activation In Bacterial
Chemotaxis: The 2.1 Angstrom Structure Of A Threonine To
Isoleucine Mutant At Position 87 Of Chey
Length = 128
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 49/101 (48%), Gaps = 6/101 (5%)
Query: 1 MGFSVTKCNRAEIALDML-RTNKNGYDIVISDVHMPDMDGFKLLELV---GLEMDLPVIM 56
+GF+ AE +D L + GY VISD +MP+MDG +LL+ + G LPV+M
Sbjct: 27 LGFN--NVEEAEDGVDALNKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLM 84
Query: 57 MCAHGSKEVVMKGVTHDACDYLTKPVRIEELKNIWQHVVRK 97
+ A KE ++ A Y+ KP L+ + K
Sbjct: 85 VIAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFEK 125
>pdb|1AB6|A Chain A, Structure Of Chey Mutant F14n, V86t
pdb|1AB6|B Chain B, Structure Of Chey Mutant F14n, V86t
Length = 125
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 48/101 (47%), Gaps = 6/101 (5%)
Query: 1 MGFSVTKCNRAEIALDML-RTNKNGYDIVISDVHMPDMDGFKLLELV---GLEMDLPVIM 56
+GF+ AE +D L + GY VISD +MP+MDG +LL+ + G LPV+M
Sbjct: 24 LGFN--NVEEAEDGVDALNKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLM 81
Query: 57 MCAHGSKEVVMKGVTHDACDYLTKPVRIEELKNIWQHVVRK 97
A KE ++ A Y+ KP L+ + K
Sbjct: 82 TTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFEK 122
>pdb|3MYY|A Chain A, Structure Of E. Coli Chey Mutant A113p Bound To Beryllium
Fluoride
pdb|3MYY|B Chain B, Structure Of E. Coli Chey Mutant A113p Bound To Beryllium
Fluoride
Length = 128
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 45/85 (52%), Gaps = 6/85 (7%)
Query: 1 MGFSVTKCNRAEIALDML-RTNKNGYDIVISDVHMPDMDGFKLLELV---GLEMDLPVIM 56
+GF+ AE +D L + GY VISD +MP+MDG +LL+ + G LPV+M
Sbjct: 27 LGFN--NVEEAEDGVDALNKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLM 84
Query: 57 MCAHGSKEVVMKGVTHDACDYLTKP 81
+ A KE ++ A Y+ KP
Sbjct: 85 VTAEAKKENIIAAAQAGASGYVVKP 109
>pdb|1MIH|A Chain A, A Role For Chey Glu 89 In Chez-Mediated Dephosphorylation
Of The E. Coli Chemotaxis Response Regulator Chey
pdb|1MIH|B Chain B, A Role For Chey Glu 89 In Chez-Mediated Dephosphorylation
Of The E. Coli Chemotaxis Response Regulator Chey
Length = 129
Score = 51.2 bits (121), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 48/101 (47%), Gaps = 6/101 (5%)
Query: 1 MGFSVTKCNRAEIALDML-RTNKNGYDIVISDVHMPDMDGFKLLELV---GLEMDLPVIM 56
+GF+ AE +D L + GY VISD MP+MDG +LL+ + G LPV+M
Sbjct: 28 LGFN--NVEEAEDGVDALNKLQAGGYGFVISDWRMPNMDGLELLKTIRADGAMSALPVLM 85
Query: 57 MCAHGSKEVVMKGVTHDACDYLTKPVRIEELKNIWQHVVRK 97
+ A KE ++ A Y+ KP L+ + K
Sbjct: 86 VTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFEK 126
>pdb|3OO0|A Chain A, Structure Of Apo Chey A113p
pdb|3OO0|B Chain B, Structure Of Apo Chey A113p
pdb|3OO1|A Chain A, Structure Of E. Coli Chey Mutant A113p In The Absence Of
Sulfate
pdb|3OO1|B Chain B, Structure Of E. Coli Chey Mutant A113p In The Absence Of
Sulfate
Length = 129
Score = 51.2 bits (121), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 45/85 (52%), Gaps = 6/85 (7%)
Query: 1 MGFSVTKCNRAEIALDML-RTNKNGYDIVISDVHMPDMDGFKLLELV---GLEMDLPVIM 56
+GF+ AE +D L + GY VISD +MP+MDG +LL+ + G LPV+M
Sbjct: 28 LGFN--NVEEAEDGVDALNKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLM 85
Query: 57 MCAHGSKEVVMKGVTHDACDYLTKP 81
+ A KE ++ A Y+ KP
Sbjct: 86 VTAEAKKENIIAAAQAGASGYVVKP 110
>pdb|3RVJ|A Chain A, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89q
pdb|3RVJ|B Chain B, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89q
pdb|3RVK|A Chain A, Structure Of The Chey-Mn2+ Complex With Substitutions At
59 And 89: N59d E89q
Length = 132
Score = 51.2 bits (121), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 48/101 (47%), Gaps = 6/101 (5%)
Query: 1 MGFSVTKCNRAEIALDML-RTNKNGYDIVISDVHMPDMDGFKLLELV---GLEMDLPVIM 56
+GF+ AE +D L + GY VISD MP+MDG +LL+ + G LPV+M
Sbjct: 31 LGFN--NVEEAEDGVDALNKLQAGGYGFVISDWDMPNMDGLELLKTIRADGAMSALPVLM 88
Query: 57 MCAHGSKEVVMKGVTHDACDYLTKPVRIEELKNIWQHVVRK 97
+ A KE ++ A Y+ KP L+ + K
Sbjct: 89 VTAQAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFEK 129
>pdb|3FGZ|A Chain A, Crystal Structure Of Chey Triple Mutant F14e, N59m, E89r
Complexed With Bef3- And Mn2+
pdb|3FGZ|B Chain B, Crystal Structure Of Chey Triple Mutant F14e, N59m, E89r
Complexed With Bef3- And Mn2+
Length = 128
Score = 50.8 bits (120), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 48/101 (47%), Gaps = 6/101 (5%)
Query: 1 MGFSVTKCNRAEIALDML-RTNKNGYDIVISDVHMPDMDGFKLLELV---GLEMDLPVIM 56
+GF+ AE +D L + GY VISD MP+MDG +LL+ + G LPV+M
Sbjct: 27 LGFN--NVEEAEDGVDALNKLQAGGYGFVISDWMMPNMDGLELLKTIRADGAMSALPVLM 84
Query: 57 MCAHGSKEVVMKGVTHDACDYLTKPVRIEELKNIWQHVVRK 97
+ A KE ++ A Y+ KP L+ + K
Sbjct: 85 VTARAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFEK 125
>pdb|3RVL|A Chain A, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89r
pdb|3RVL|B Chain B, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89r
pdb|3RVM|A Chain A, Structure Of The Chey-Mn2+ Complex With Substitutions At
59 And 89: N59d And E89r
pdb|3RVR|A Chain A, Structure Of The Cheyn59dE89R MOLYBDATE COMPLEX
pdb|3RVR|B Chain B, Structure Of The Cheyn59dE89R MOLYBDATE COMPLEX
pdb|3RVS|A Chain A, Structure Of The Cheyn59dE89R TUNGSTATE COMPLEX
pdb|3RVS|B Chain B, Structure Of The Cheyn59dE89R TUNGSTATE COMPLEX
Length = 132
Score = 50.8 bits (120), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 48/101 (47%), Gaps = 6/101 (5%)
Query: 1 MGFSVTKCNRAEIALDML-RTNKNGYDIVISDVHMPDMDGFKLLELV---GLEMDLPVIM 56
+GF+ AE +D L + GY VISD MP+MDG +LL+ + G LPV+M
Sbjct: 31 LGFN--NVEEAEDGVDALNKLQAGGYGFVISDWDMPNMDGLELLKTIRADGAMSALPVLM 88
Query: 57 MCAHGSKEVVMKGVTHDACDYLTKPVRIEELKNIWQHVVRK 97
+ A KE ++ A Y+ KP L+ + K
Sbjct: 89 VTARAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFEK 129
>pdb|3RVP|A Chain A, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89k
pdb|3RVP|B Chain B, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89k
pdb|3RVQ|A Chain A, Structure Of The Chey-Mn2+ Complex With Substitutions At
59 And 89: N59d E89k
Length = 132
Score = 50.8 bits (120), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 48/101 (47%), Gaps = 6/101 (5%)
Query: 1 MGFSVTKCNRAEIALDML-RTNKNGYDIVISDVHMPDMDGFKLLELV---GLEMDLPVIM 56
+GF+ AE +D L + GY VISD MP+MDG +LL+ + G LPV+M
Sbjct: 31 LGFN--NVEEAEDGVDALNKLQAGGYGFVISDWDMPNMDGLELLKTIRADGAMSALPVLM 88
Query: 57 MCAHGSKEVVMKGVTHDACDYLTKPVRIEELKNIWQHVVRK 97
+ A KE ++ A Y+ KP L+ + K
Sbjct: 89 VTAKAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFEK 129
>pdb|2AYX|A Chain A, Solution Structure Of The E.Coli Rcsc C-Terminus (Residues
700-949) Containing Linker Region And Phosphoreceiver
Domain
Length = 254
Score = 50.8 bits (120), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 59/104 (56%), Gaps = 6/104 (5%)
Query: 1 MGFSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELV-GLEMDLPVIMMCA 59
+G+ N AL++L +KN DIV+SDV+MP+MDG++L + + L + LPVI + A
Sbjct: 152 LGYQCKTANDGVDALNVL--SKNHIDIVLSDVNMPNMDGYRLTQRIRQLGLTLPVIGVTA 209
Query: 60 HGSKEVVMKGVTHDACDYLTKPVRIEELK---NIWQHVVRKRKN 100
+ E + + L+KPV ++ +K ++ VRK ++
Sbjct: 210 NALAEEKQRCLESGMDSCLSKPVTLDVIKQTLTLYAERVRKSRD 253
>pdb|1DBW|A Chain A, Crystal Structure Of Fixj-N
pdb|1DBW|B Chain B, Crystal Structure Of Fixj-N
pdb|1DCK|A Chain A, Structure Of Unphosphorylated Fixj-N Complexed With Mn2+
pdb|1DCK|B Chain B, Structure Of Unphosphorylated Fixj-N Complexed With Mn2+
pdb|1DCM|A Chain A, Structure Of Unphosphorylated Fixj-N With An Atypical
Conformer (Monomer A)
pdb|1DCM|B Chain B, Structure Of Unphosphorylated Fixj-N With An Atypical
Conformer (Monomer A)
Length = 126
Score = 50.4 bits (119), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 56/99 (56%), Gaps = 7/99 (7%)
Query: 2 GFSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVG-LEMDLPVIMMCAH 60
GF+V AE L +NG ++++D+ MPDM G +LL +G L++++P I++ H
Sbjct: 27 GFAVKMHQSAEAFLAFAPDVRNG--VLVTDLRMPDMSGVELLRNLGDLKINIPSIVITGH 84
Query: 61 GSKEVVMKGVTHDACDYLTKP----VRIEELKNIWQHVV 95
G + ++ + A D++ KP V IE ++ +H+V
Sbjct: 85 GDVPMAVEAMKAGAVDFIEKPFEDTVIIEAIERASEHLV 123
>pdb|3OLX|A Chain A, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88s-Bef3-Mn Complex
pdb|3OLX|B Chain B, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88s-Bef3-Mn Complex
Length = 129
Score = 50.4 bits (119), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 49/101 (48%), Gaps = 6/101 (5%)
Query: 1 MGFSVTKCNRAEIALDML-RTNKNGYDIVISDVHMPDMDGFKLLELV---GLEMDLPVIM 56
+GF+ AE +D L + GY VISD +MP+MDG +LL+ + G LPV+M
Sbjct: 28 LGFN--NVEEAEDGVDALNKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLM 85
Query: 57 MCAHGSKEVVMKGVTHDACDYLTKPVRIEELKNIWQHVVRK 97
+ + KE ++ A Y+ KP L+ + K
Sbjct: 86 VTSEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFEK 126
>pdb|5CHY|A Chain A, Structure Of Chemotaxis Protein Chey
Length = 128
Score = 50.4 bits (119), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 47/92 (51%), Gaps = 6/92 (6%)
Query: 1 MGFSVTKCNRAEIALDML-RTNKNGYDIVISDVHMPDMDGFKLLELV---GLEMDLPVIM 56
+GF+ AE +D L + GY VISD +MP+MDG +LL+ + G LPV+M
Sbjct: 27 LGFN--NVEEAEDGVDALNKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLM 84
Query: 57 MCAHGSKEVVMKGVTHDACDYLTKPVRIEELK 88
+ A KE ++ A ++ KP L+
Sbjct: 85 VTAEAKKENIIAAAQAGASGWVVKPFTAATLE 116
>pdb|6CHY|A Chain A, Structure Of Chemotaxis Protein Chey
pdb|6CHY|B Chain B, Structure Of Chemotaxis Protein Chey
Length = 128
Score = 50.4 bits (119), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 47/92 (51%), Gaps = 6/92 (6%)
Query: 1 MGFSVTKCNRAEIALDML-RTNKNGYDIVISDVHMPDMDGFKLLELV---GLEMDLPVIM 56
+GF+ AE +D L + GY VISD +MP+MDG +LL+ + G LPV+M
Sbjct: 27 LGFN--NVEEAEDGVDALNKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLM 84
Query: 57 MCAHGSKEVVMKGVTHDACDYLTKPVRIEELK 88
+ A KE ++ A ++ KP L+
Sbjct: 85 VIAEAKKENIIAAAQAGASGWVVKPFTAATLE 116
>pdb|2AYZ|A Chain A, Solution Structure Of The E.Coli Rcsc C-Terminus (Residues
817-949) Containing Phosphoreceiver Domain
Length = 133
Score = 50.1 bits (118), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 62/106 (58%), Gaps = 10/106 (9%)
Query: 1 MGFSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELV-GLEMDLPVIMMCA 59
+G+ N AL++L +KN DIV+SDV+MP+MDG++L + + L + LPVI + A
Sbjct: 31 LGYQCKTANDGVDALNVL--SKNHIDIVLSDVNMPNMDGYRLTQRIRQLGLTLPVIGVTA 88
Query: 60 HGSKEVVMKGVTH--DACDYLTKPVRIEELK---NIWQHVVRKRKN 100
+ E + + D+C L+KPV ++ +K ++ VRK ++
Sbjct: 89 NALAEEKQRCLESGMDSC--LSKPVTLDVIKQTLTLYAERVRKSRD 132
>pdb|3F7N|A Chain A, Crystal Structure Of Chey Triple Mutant F14e, N59m, E89l
Complexed With Bef3- And Mn2+
pdb|3F7N|B Chain B, Crystal Structure Of Chey Triple Mutant F14e, N59m, E89l
Complexed With Bef3- And Mn2+
Length = 128
Score = 50.1 bits (118), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 48/101 (47%), Gaps = 6/101 (5%)
Query: 1 MGFSVTKCNRAEIALDML-RTNKNGYDIVISDVHMPDMDGFKLLELV---GLEMDLPVIM 56
+GF+ AE +D L + GY VISD MP+MDG +LL+ + G LPV+M
Sbjct: 27 LGFN--NVEEAEDGVDALNKLQAGGYGFVISDWMMPNMDGLELLKTIRADGAMSALPVLM 84
Query: 57 MCAHGSKEVVMKGVTHDACDYLTKPVRIEELKNIWQHVVRK 97
+ A KE ++ A Y+ KP L+ + K
Sbjct: 85 VTALAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFEK 125
>pdb|3OLW|A Chain A, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88t-Bef3-Mn Complex
pdb|3OLW|B Chain B, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88t-Bef3-Mn Complex
Length = 129
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 48/101 (47%), Gaps = 6/101 (5%)
Query: 1 MGFSVTKCNRAEIALDML-RTNKNGYDIVISDVHMPDMDGFKLLELV---GLEMDLPVIM 56
+GF+ AE +D L + GY VISD +MP+MDG +LL+ + G LPV+M
Sbjct: 28 LGFN--NVEEAEDGVDALNKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLM 85
Query: 57 MCAHGSKEVVMKGVTHDACDYLTKPVRIEELKNIWQHVVRK 97
+ KE ++ A Y+ KP L+ + K
Sbjct: 86 VTTEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFEK 126
>pdb|3OLV|A Chain A, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88v-Bef3-Mg Complex
pdb|3OLV|B Chain B, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88v-Bef3-Mg Complex
Length = 129
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 48/101 (47%), Gaps = 6/101 (5%)
Query: 1 MGFSVTKCNRAEIALDML-RTNKNGYDIVISDVHMPDMDGFKLLELV---GLEMDLPVIM 56
+GF+ AE +D L + GY VISD +MP+MDG +LL+ + G LPV+M
Sbjct: 28 LGFN--NVEEAEDGVDALNKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLM 85
Query: 57 MCAHGSKEVVMKGVTHDACDYLTKPVRIEELKNIWQHVVRK 97
+ KE ++ A Y+ KP L+ + K
Sbjct: 86 VTVEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFEK 126
>pdb|1JBE|A Chain A, 1.08 A Structure Of Apo-Chey Reveals Meta-Active
Conformation
Length = 128
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 48/101 (47%), Gaps = 6/101 (5%)
Query: 1 MGFSVTKCNRAEIALDML-RTNKNGYDIVISDVHMPDMDGFKLLELVGLEM---DLPVIM 56
+GF+ AE +D L + GY VISD +MP+MDG +LL+ + LPV+M
Sbjct: 27 LGFN--NVEEAEDGVDALNKLQAGGYGFVISDWNMPNMDGLELLKTIRAXXAMSALPVLM 84
Query: 57 MCAHGSKEVVMKGVTHDACDYLTKPVRIEELKNIWQHVVRK 97
+ A KE ++ A Y+ KP L+ + K
Sbjct: 85 VTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFEK 125
>pdb|1E6M|A Chain A, Two-Component Signal Transduction System D57a Mutant Of
Chey
Length = 128
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 48/101 (47%), Gaps = 6/101 (5%)
Query: 1 MGFSVTKCNRAEIALDML-RTNKNGYDIVISDVHMPDMDGFKLLELV---GLEMDLPVIM 56
+GF+ AE +D L + GY VIS +MP+MDG +LL+ + G LPV+M
Sbjct: 27 LGFN--NVEEAEDGVDALNKLQAGGYGFVISAWNMPNMDGLELLKTIRADGAMSALPVLM 84
Query: 57 MCAHGSKEVVMKGVTHDACDYLTKPVRIEELKNIWQHVVRK 97
+ A KE ++ A Y+ KP L+ + K
Sbjct: 85 VTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFEK 125
>pdb|3OLY|A Chain A, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88m-Bef3-Mn Complex
pdb|3OLY|B Chain B, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88m-Bef3-Mn Complex
Length = 129
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 48/101 (47%), Gaps = 6/101 (5%)
Query: 1 MGFSVTKCNRAEIALDML-RTNKNGYDIVISDVHMPDMDGFKLLELV---GLEMDLPVIM 56
+GF+ AE +D L + GY VISD +MP+MDG +LL+ + G LPV+M
Sbjct: 28 LGFN--NVEEAEDGVDALNKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLM 85
Query: 57 MCAHGSKEVVMKGVTHDACDYLTKPVRIEELKNIWQHVVRK 97
+ KE ++ A Y+ KP L+ + K
Sbjct: 86 VTMEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFEK 126
>pdb|1C4W|A Chain A, 1.9 A Structure Of A-Thiophosphonate Modified Chey D57c
Length = 128
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 48/101 (47%), Gaps = 6/101 (5%)
Query: 1 MGFSVTKCNRAEIALDML-RTNKNGYDIVISDVHMPDMDGFKLLELV---GLEMDLPVIM 56
+GF+ AE +D L + GY VIS +MP+MDG +LL+ + G LPV+M
Sbjct: 27 LGFN--NVEEAEDGVDALNKLQAGGYGFVISXWNMPNMDGLELLKTIRADGAMSALPVLM 84
Query: 57 MCAHGSKEVVMKGVTHDACDYLTKPVRIEELKNIWQHVVRK 97
+ A KE ++ A Y+ KP L+ + K
Sbjct: 85 VTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFEK 125
>pdb|1DC7|A Chain A, Structure Of A Transiently Phosphorylated "switch" In
Bacterial Signal Transduction
Length = 124
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 26 DIVISDVHMPDMDGFKLLELVGLEMD-LPVIMMCAHGSKEVVMKGVTHDACDYLTKPVRI 84
D+++SD+ MP MDG LL+ + LPVI+M AH + + A DYL KP I
Sbjct: 49 DVLLSDIRMPGMDGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDI 108
Query: 85 EE 86
+E
Sbjct: 109 DE 110
>pdb|1ZDM|A Chain A, Crystal Structure Of Activated Chey Bound To Xe
pdb|1ZDM|B Chain B, Crystal Structure Of Activated Chey Bound To Xe
Length = 129
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 48/101 (47%), Gaps = 6/101 (5%)
Query: 1 MGFSVTKCNRAEIALDML-RTNKNGYDIVISDVHMPDMDGFKLLELV---GLEMDLPVIM 56
+GF+ AE +D L + GY VIS +MP+MDG +LL+ + G LPV+M
Sbjct: 28 LGFN--NVEEAEDGVDALNKLQAGGYGFVISXWNMPNMDGLELLKTIRADGAMSALPVLM 85
Query: 57 MCAHGSKEVVMKGVTHDACDYLTKPVRIEELKNIWQHVVRK 97
+ A KE ++ A Y+ KP L+ + K
Sbjct: 86 VTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFEK 126
>pdb|1J56|A Chain A, Minimized Average Structure Of Beryllofluoride-Activated
Ntrc Receiver Domain: Model Structure Incorporating
Active Site Contacts
pdb|1KRX|A Chain A, Solution Structure Of Beryllofluoride-Activated Ntrc
Receiver Domain: Model Structures Incorporating Active
Site Contacts
pdb|1NTR|A Chain A, Solution Structure Of The N-Terminal Receiver Domain Of
Ntrc
Length = 124
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 26 DIVISDVHMPDMDGFKLLELVGLEMD-LPVIMMCAHGSKEVVMKGVTHDACDYLTKPVRI 84
D+++SD+ MP MDG LL+ + LPVI+M AH + + A DYL KP I
Sbjct: 49 DVLLSDIRMPGMDGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDI 108
Query: 85 EE 86
+E
Sbjct: 109 DE 110
>pdb|3R0J|A Chain A, Structure Of Phop From Mycobacterium Tuberculosis
pdb|3R0J|B Chain B, Structure Of Phop From Mycobacterium Tuberculosis
Length = 250
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 48/97 (49%), Gaps = 3/97 (3%)
Query: 2 GFSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVGLE-MDLPVIMMCAH 60
GF V ALD R + D VI DV P DGF +L + + +D P + + A
Sbjct: 47 GFEVYTATNGAQALDRARETRP--DAVILDVXXPGXDGFGVLRRLRADGIDAPALFLTAR 104
Query: 61 GSKEVVMKGVTHDACDYLTKPVRIEELKNIWQHVVRK 97
S + + G+T DY+TKP +EE+ + ++R+
Sbjct: 105 DSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRR 141
>pdb|1KRW|A Chain A, Solution Structure And Backbone Dynamics Of
Beryllofluoride- Activated Ntrc Receiver Domain
Length = 124
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 26 DIVISDVHMPDMDGFKLLELVGLEMD-LPVIMMCAHGSKEVVMKGVTHDACDYLTKPVRI 84
D+++SD+ MP MDG LL+ + LPVI+M AH + + A DYL KP I
Sbjct: 49 DVLLSDIRMPGMDGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDI 108
Query: 85 EE 86
+E
Sbjct: 109 DE 110
>pdb|2ID7|A Chain A, 1.75 A Structure Of T87i Phosphono-Chey
Length = 128
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 48/101 (47%), Gaps = 6/101 (5%)
Query: 1 MGFSVTKCNRAEIALDML-RTNKNGYDIVISDVHMPDMDGFKLLELV---GLEMDLPVIM 56
+GF+ AE +D L + GY VIS +MP+MDG +LL+ + G LPV+M
Sbjct: 27 LGFN--NVEEAEDGVDALNKLQAGGYGFVISXWNMPNMDGLELLKTIRADGAMSALPVLM 84
Query: 57 MCAHGSKEVVMKGVTHDACDYLTKPVRIEELKNIWQHVVRK 97
+ A KE ++ A Y+ KP L+ + K
Sbjct: 85 VIAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFEK 125
>pdb|2CHE|A Chain A, Structure Of The Mg2+-Bound Form Of Chey And Mechanism Of
Phosphoryl Transfer In Bacterial Chemotaxis
pdb|2CHF|A Chain A, Structure Of The Mg2+-Bound Form Of Chey And The Mechanism
Of Phosphoryl Transfer In Bacterial Chemotaxis
pdb|2PL9|A Chain A, Crystal Structure Of Chey-Mg(2+)-Bef(3)(-) In Complex With
Chez(C19) Peptide Solved From A P2(1)2(1)2 Crystal
pdb|2PL9|B Chain B, Crystal Structure Of Chey-Mg(2+)-Bef(3)(-) In Complex With
Chez(C19) Peptide Solved From A P2(1)2(1)2 Crystal
pdb|2PL9|C Chain C, Crystal Structure Of Chey-Mg(2+)-Bef(3)(-) In Complex With
Chez(C19) Peptide Solved From A P2(1)2(1)2 Crystal
pdb|2PMC|A Chain A, Crystal Structure Of Chey-mg(2+) In Complex With Chez(c15)
Peptide Solved From A P1 Crystal
pdb|2PMC|B Chain B, Crystal Structure Of Chey-mg(2+) In Complex With Chez(c15)
Peptide Solved From A P1 Crystal
pdb|2PMC|C Chain C, Crystal Structure Of Chey-mg(2+) In Complex With Chez(c15)
Peptide Solved From A P1 Crystal
pdb|2PMC|D Chain D, Crystal Structure Of Chey-mg(2+) In Complex With Chez(c15)
Peptide Solved From A P1 Crystal
Length = 128
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 49/101 (48%), Gaps = 6/101 (5%)
Query: 1 MGFSVTKCNRAEIALDML-RTNKNGYDIVISDVHMPDMDGFKLLELVGLE---MDLPVIM 56
+GF+ AE +D L + G+ +ISD +MP+MDG +LL+ + + LPV+M
Sbjct: 27 LGFN--NVEEAEDGVDALNKLQAGGFGFIISDWNMPNMDGLELLKTIRADSAMSALPVLM 84
Query: 57 MCAHGSKEVVMKGVTHDACDYLTKPVRIEELKNIWQHVVRK 97
+ A KE ++ A Y+ KP L+ + K
Sbjct: 85 VTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFEK 125
>pdb|1D5W|A Chain A, Phosphorylated Fixj Receiver Domain
pdb|1D5W|B Chain B, Phosphorylated Fixj Receiver Domain
pdb|1D5W|C Chain C, Phosphorylated Fixj Receiver Domain
Length = 126
Score = 47.8 bits (112), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 55/99 (55%), Gaps = 7/99 (7%)
Query: 2 GFSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVG-LEMDLPVIMMCAH 60
GF+V AE L +NG ++++ + MPDM G +LL +G L++++P I++ H
Sbjct: 27 GFAVKMHQSAEAFLAFAPDVRNG--VLVTXLRMPDMSGVELLRNLGDLKINIPSIVITGH 84
Query: 61 GSKEVVMKGVTHDACDYLTKP----VRIEELKNIWQHVV 95
G + ++ + A D++ KP V IE ++ +H+V
Sbjct: 85 GDVPMAVEAMKAGAVDFIEKPFEDTVIIEAIERASEHLV 123
>pdb|2FKA|A Chain A, Crystal Structure Of Mg(2+) And Bef(3)(-)-Bound Chey In
Complex With Chez(200-214) Solved From A F432 Crystal
Grown In Caps (Ph 10.5)
pdb|2FLK|A Chain A, Crystal Structure Of Chey In Complex With Chez(200-214)
Solved From A F432 Crystal Grown In Caps (Ph 10.5)
pdb|2FLW|A Chain A, Crystal Structure Of Mg2+ And Bef3- Ound Chey In Complex
With Chez 200-214 Solved From A F432 Crystal Grown In
Hepes (ph 7.5)
pdb|2FMF|A Chain A, Crystal Structure Of Chey In Complex With Chez 200-214
Solved From A F432 Crystal Grown In Hepes (ph 7.5)
pdb|2FMH|A Chain A, Crystal Structure Of Mg2+ And Bef3- Bound Chey In Complex
With Chez 200-214 Solved From A F432 Crystal Grown In
Tris (Ph 8.4)
pdb|2FMI|A Chain A, Crystal Structure Of Chey In Complex With Chez 200-214
Solved From A F432 Crystal Grown In Tris (Ph 8.4)
pdb|2FMK|A Chain A, Crystal Structure Of Mg2+ And Bef3- Bound Chey In Complex
With Chez 200-214 Solved From A P2(1)2(1)2 Crystal Grown
In Mes (Ph 6.0)
Length = 129
Score = 47.8 bits (112), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 49/101 (48%), Gaps = 6/101 (5%)
Query: 1 MGFSVTKCNRAEIALDML-RTNKNGYDIVISDVHMPDMDGFKLLELVGLE---MDLPVIM 56
+GF+ AE +D L + G+ +ISD +MP+MDG +LL+ + + LPV+M
Sbjct: 28 LGFN--NVEEAEDGVDALNKLQAGGFGFIISDWNMPNMDGLELLKTIRADSAMSALPVLM 85
Query: 57 MCAHGSKEVVMKGVTHDACDYLTKPVRIEELKNIWQHVVRK 97
+ A KE ++ A Y+ KP L+ + K
Sbjct: 86 VTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFEK 126
>pdb|2ID9|A Chain A, 1.85 A Structure Of T87iY106W PHOSPHONO-Chey
pdb|2IDM|A Chain A, 2.00 A Structure Of T87iY106W PHOSPHONO-Chey
Length = 128
Score = 47.4 bits (111), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 46/92 (50%), Gaps = 6/92 (6%)
Query: 1 MGFSVTKCNRAEIALDML-RTNKNGYDIVISDVHMPDMDGFKLLELV---GLEMDLPVIM 56
+GF+ AE +D L + GY VIS +MP+MDG +LL+ + G LPV+M
Sbjct: 27 LGFN--NVEEAEDGVDALNKLQAGGYGFVISXWNMPNMDGLELLKTIRADGAMSALPVLM 84
Query: 57 MCAHGSKEVVMKGVTHDACDYLTKPVRIEELK 88
+ A KE ++ A ++ KP L+
Sbjct: 85 VIAEAKKENIIAAAQAGASGWVVKPFTAATLE 116
>pdb|1UDR|A Chain A, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced
By Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By
Leu (Stabilizing Mutations In Helix 4)
pdb|1UDR|B Chain B, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced
By Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By
Leu (Stabilizing Mutations In Helix 4)
pdb|1UDR|C Chain C, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced
By Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By
Leu (Stabilizing Mutations In Helix 4)
pdb|1UDR|D Chain D, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced
By Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By
Leu (Stabilizing Mutations In Helix 4)
Length = 129
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 47/101 (46%), Gaps = 6/101 (5%)
Query: 1 MGFSVTKCNRAEIALDML-RTNKNGYDIVISDVHMPDMDGFKLLELV---GLEMDLPVIM 56
+GF+ AE +D L + GY VISD +MP+MDG +LL+ + G LPV+M
Sbjct: 28 LGFN--NVEEAEDGVDALNKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLM 85
Query: 57 MCAHGSKEVVMKGVTHDACDYLTKPVRIEELKNIWQHVVRK 97
+ A E + A Y+ KP L+ + K
Sbjct: 86 VTAEADAENIKALAQAGASGYVVKPFTAATLEEKLNKIFEK 126
>pdb|1DC8|A Chain A, Structure Of A Transiently Phosphorylated "switch" In
Bacterial Signal Transduction
Length = 124
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 26 DIVISDVHMPDMDGFKLLELVGLEMD-LPVIMMCAHGSKEVVMKGVTHDACDYLTKPVRI 84
D+++S + MP MDG LL+ + LPVI+M AH + + A DYL KP I
Sbjct: 49 DVLLSXIRMPGMDGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDI 108
Query: 85 EE 86
+E
Sbjct: 109 DE 110
>pdb|3T6K|A Chain A, Crystal Structure Of A Hypothetical Response Regulator
(Caur_3799) From Chloroflexus Aurantiacus J-10-Fl At
1.86 A Resolution
pdb|3T6K|B Chain B, Crystal Structure Of A Hypothetical Response Regulator
(Caur_3799) From Chloroflexus Aurantiacus J-10-Fl At
1.86 A Resolution
Length = 136
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 46/97 (47%), Gaps = 9/97 (9%)
Query: 2 GFSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELV---GLEMDLPVIMMC 58
G+ V + E AL + KN D +I DV +P +DG+ L + V L LP++ +
Sbjct: 28 GYEVRRAASGEEALQQI--YKNLPDALICDVLLPGIDGYTLCKRVRQHPLTKTLPILXLT 85
Query: 59 AHGSKEVVMKGVTHDACDYLTKPVRIEEL----KNIW 91
A G + G A DYL KP +EL KNI
Sbjct: 86 AQGDISAKIAGFEAGANDYLAKPFEPQELVYRVKNIL 122
>pdb|2CHY|A Chain A, Three-Dimensional Structure Of Chey, The Response
Regulator Of Bacterial Chemotaxis
Length = 128
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 48/101 (47%), Gaps = 6/101 (5%)
Query: 1 MGFSVTKCNRAEIALDML-RTNKNGYDIVISDVHMPDMDGFKLLELVGLE---MDLPVIM 56
+GF+ AE +D L + G+ +I D +MP+MDG +LL+ + + LPV+M
Sbjct: 27 LGFN--NVEEAEDGVDALNKLQAGGFGFIICDWNMPNMDGLELLKTIRADSAMSALPVLM 84
Query: 57 MCAHGSKEVVMKGVTHDACDYLTKPVRIEELKNIWQHVVRK 97
+ A KE ++ A Y+ KP L+ + K
Sbjct: 85 VTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFEK 125
>pdb|1U8T|A Chain A, Crystal Structure Of Chey D13k Y106w Alone And In Complex
With A Flim Peptide
pdb|1U8T|B Chain B, Crystal Structure Of Chey D13k Y106w Alone And In Complex
With A Flim Peptide
pdb|1U8T|C Chain C, Crystal Structure Of Chey D13k Y106w Alone And In Complex
With A Flim Peptide
pdb|1U8T|D Chain D, Crystal Structure Of Chey D13k Y106w Alone And In Complex
With A Flim Peptide
Length = 128
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 44/92 (47%), Gaps = 6/92 (6%)
Query: 1 MGFSVTKCNRAEIALDML-RTNKNGYDIVISDVHMPDMDGFKLLELV---GLEMDLPVIM 56
+GF+ AE +D L + GY VISD + P+ DG +LL+ + G LPV+
Sbjct: 27 LGFN--NVEEAEDGVDALNKLQAGGYGFVISDWNXPNXDGLELLKTIRADGAXSALPVLX 84
Query: 57 MCAHGSKEVVMKGVTHDACDYLTKPVRIEELK 88
+ A KE ++ A ++ KP L+
Sbjct: 85 VTAEAKKENIIAAAQAGASGWVVKPFTAATLE 116
>pdb|3JTE|A Chain A, Crystal Structure Of Response Regulator Receiver Domain
Protein From Clostridium Thermocellum
Length = 143
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 48/93 (51%), Gaps = 5/93 (5%)
Query: 15 LDMLRTNKNGYDIVISDVHMPDMDGFKLL-ELVGLEMDLPVIMMCAHGSKEVVMKGVTHD 73
L + N N D+VI+D+ MP + G +L E+ + + VI++ HG + + +
Sbjct: 40 LRIFTENCNSIDVVITDMKMPKLSGMDILREIKKITPHMAVIILTGHGDLDNAILAMKEG 99
Query: 74 ACDYLTKPVRIEELKNIWQHVVRKRK----NER 102
A +YL KPV ++L + + ++K NER
Sbjct: 100 AFEYLRKPVTAQDLSIAINNAINRKKLLMENER 132
>pdb|1P6U|A Chain A, Nmr Structure Of The Bef3-Activated Structure Of The
Response Regulator Chey2-Mg2+ From Sinorhizobium
Meliloti
pdb|1P6Q|A Chain A, Nmr Structure Of The Response Regulator Chey2 From
Sinorhizobium Meliloti, Complexed With Mg++
Length = 129
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Query: 22 KNGYDIVISDVHMPDMDGFKLLELV---GLEMDLPVIMMCAHGSKEVVMKGVTHDACDYL 78
+N + +VISD +MP MDG LL+ V I++ A G + +V K A + L
Sbjct: 49 QNPHHLVISDFNMPKMDGLGLLQAVRANPATKKAAFIILTAQGDRALVQKAAALGANNVL 108
Query: 79 TKPVRIEELKNIWQHV 94
KP IE++K + V
Sbjct: 109 AKPFTIEKMKAAIEAV 124
>pdb|1YS6|A Chain A, Crystal Structure Of The Response Regulatory Protein Prra
From Mycobacterium Tuberculosis
pdb|1YS6|B Chain B, Crystal Structure Of The Response Regulatory Protein Prra
From Mycobacterium Tuberculosis
pdb|1YS7|A Chain A, Crystal Structure Of The Response Regulator Protein Prra
Comlexed With Mg2+
pdb|1YS7|B Chain B, Crystal Structure Of The Response Regulator Protein Prra
Comlexed With Mg2+
Length = 233
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 55/100 (55%), Gaps = 7/100 (7%)
Query: 2 GFSV-TKCNRAEIALDMLRT-NKNGYDIVISDVHMPDMDGFKLL-ELVGLEMDLPVIMMC 58
GF V T + AE LR+ +N D ++ D++MP +DG ++ L ++ D+PV ++
Sbjct: 31 GFEVATAVDGAE----ALRSATENRPDAIVLDINMPVLDGVSVVTALRAMDNDVPVCVLS 86
Query: 59 AHGSKEVVMKGVTHDACDYLTKPVRIEELKNIWQHVVRKR 98
A S + + G+ A DYL KP + EL + ++R+R
Sbjct: 87 ARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRR 126
>pdb|2OQR|A Chain A, The Structure Of The Response Regulator Regx3 From
Mycobacterium Tuberculosis
Length = 230
Score = 43.9 bits (102), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 55/113 (48%), Gaps = 3/113 (2%)
Query: 2 GFSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVGLEMDLPVIMMCAHG 61
GF T AL ++ G DIV+ D+ +P M G + + + +PVIM+ A
Sbjct: 28 GFEATVVTDGPAAL--AEFDRAGADIVLLDLMLPGMSGTDVCKQLRARSSVPVIMVTARD 85
Query: 62 SKEVVMKGVTHDACDYLTKPVRIEELKNIWQHVVRKRKNERKDLEQSGSVEGG 114
S+ + G+ A DY+TKP EL + V+R+ ++ ++ G +E G
Sbjct: 86 SEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGGDDDSEM-SDGVLESG 137
>pdb|3NNN|A Chain A, Bef3 Activated Drrd Receiver Domain
pdb|3NNN|B Chain B, Bef3 Activated Drrd Receiver Domain
Length = 122
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 52/97 (53%), Gaps = 3/97 (3%)
Query: 3 FSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVGLE-MDLPVIMMCAHG 61
F+V C E + M +D+VI D+ +P DG+++L+ + ++ PV+M+ A
Sbjct: 27 FTVDVCYDGEEGMYM--ALNEPFDVVILDIMLPVHDGWEILKSMRESGVNTPVLMLTALS 84
Query: 62 SKEVVMKGVTHDACDYLTKPVRIEELKNIWQHVVRKR 98
E +KG+ A DYL KP + EL + ++R++
Sbjct: 85 DVEYRVKGLNMGADDYLPKPFDLRELIARVRALIRRK 121
>pdb|3TO5|A Chain A, High Resolution Structure Of Chey3 From Vibrio Cholerae
Length = 134
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 48/92 (52%), Gaps = 6/92 (6%)
Query: 1 MGFSVTK-CNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVGLEMD---LPVIM 56
+GF+ T+ + AL ML+ K +D V++D +MP M G LL+ + + + LPV+M
Sbjct: 35 LGFNNTQEADDGLTALPMLK--KGDFDFVVTDWNMPGMQGIDLLKNIRADEELKHLPVLM 92
Query: 57 MCAHGSKEVVMKGVTHDACDYLTKPVRIEELK 88
+ A +E +++ Y+ KP LK
Sbjct: 93 ITAEAKREQIIEAAQAGVNGYIVKPFTAATLK 124
>pdb|1YIO|A Chain A, Crystallographic Structure Of Response Regulator Styr From
Pseudomonas Fluorescens
pdb|1ZN2|A Chain A, Low Resolution Structure Of Response Regulator Styr
Length = 208
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 60/123 (48%), Gaps = 9/123 (7%)
Query: 2 GFSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLE-LVGLEMDLPVIMMCAH 60
GF V + A L+ R ++G ++ D+ MP M G +L E L + +P++ + AH
Sbjct: 28 GFEVETFDCASTFLEHRRPEQHG--CLVLDMRMPGMSGIELQEQLTAISDGIPIVFITAH 85
Query: 61 GSKEVVMKGVTHDACDYLTKPVRIEEL-----KNIWQHVVRKRKNERKD-LEQSGSVEGG 114
G + ++ + A ++L KP + L + + + R++ E +D LEQ S G
Sbjct: 86 GDIPMTVRAMKAGAIEFLPKPFEEQALLDAIEQGLQLNAERRQARETQDQLEQLFSSLTG 145
Query: 115 AQQ 117
+Q
Sbjct: 146 REQ 148
>pdb|1ZES|A Chain A, Bef3- Activated Phob Receiver Domain
pdb|1ZES|B Chain B, Bef3- Activated Phob Receiver Domain
pdb|1ZES|C Chain C, Bef3- Activated Phob Receiver Domain
Length = 125
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 53/99 (53%), Gaps = 5/99 (5%)
Query: 2 GFSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELV---GLEMDLPVIMMC 58
GF + + A++ L N+ D+++ D +P G + ++ + + D+PV+M+
Sbjct: 26 GFQPVEAEDYDSAVNQL--NEPWPDLILLDWMLPGGSGIQFIKHLKRESMTRDIPVVMLT 83
Query: 59 AHGSKEVVMKGVTHDACDYLTKPVRIEELKNIWQHVVRK 97
A G +E ++G+ A DY+TKP +EL + V+R+
Sbjct: 84 ARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122
>pdb|1B00|A Chain A, Phob Receiver Domain From Escherichia Coli
pdb|1B00|B Chain B, Phob Receiver Domain From Escherichia Coli
pdb|2IYN|A Chain A, The Co-Factor-Induced Pre-Active Conformation In Phob
pdb|2IYN|B Chain B, The Co-Factor-Induced Pre-Active Conformation In Phob
pdb|2IYN|C Chain C, The Co-Factor-Induced Pre-Active Conformation In Phob
Length = 127
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 53/99 (53%), Gaps = 5/99 (5%)
Query: 2 GFSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELV---GLEMDLPVIMMC 58
GF + + A++ L N+ D+++ D +P G + ++ + + D+PV+M+
Sbjct: 26 GFQPVEAEDYDSAVNQL--NEPWPDLILLDWMLPGGSGIQFIKHLKRESMTRDIPVVMLT 83
Query: 59 AHGSKEVVMKGVTHDACDYLTKPVRIEELKNIWQHVVRK 97
A G +E ++G+ A DY+TKP +EL + V+R+
Sbjct: 84 ARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122
>pdb|1DZ3|A Chain A, Domain-Swapping In The Sporulation Response Regulator
Spo0a
Length = 130
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 40/74 (54%), Gaps = 2/74 (2%)
Query: 26 DIVISDVHMPDMDGFKLLELV--GLEMDLPVIMMCAHGSKEVVMKGVTHDACDYLTKPVR 83
DI++ D+ MP +DG +LE + G E VIM+ A G ++V K V A ++ KP
Sbjct: 50 DILLLDIIMPHLDGLAVLERIRAGFEHQPNVIMLTAFGQEDVTKKAVELGASYFILKPFD 109
Query: 84 IEELKNIWQHVVRK 97
+E L + + V K
Sbjct: 110 MENLAHHIRQVYGK 123
>pdb|3GT7|A Chain A, Crystal Structure Of Signal Receiver Domain Of Signal
Transduction Histidine Kinase From Syntrophus
Aciditrophicus
Length = 154
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 36/61 (59%), Gaps = 3/61 (4%)
Query: 26 DIVISDVHMPDMDGFKLLELVGLEMDL---PVIMMCAHGSKEVVMKGVTHDACDYLTKPV 82
D++ISDV MP+MDG+ L + + DL PVI++ V++ + A D++TKP
Sbjct: 53 DLIISDVLMPEMDGYALCRWLKGQPDLRTIPVILLTILSDPRDVVRSLECGADDFITKPC 112
Query: 83 R 83
+
Sbjct: 113 K 113
>pdb|1NXO|A Chain A, Micarec Ph7.0
pdb|1NXP|A Chain A, Micarec Ph4.5
pdb|1NXS|A Chain A, Micarec Ph4.9
pdb|1NXV|A Chain A, Micarec Ph 4.2
pdb|1NXW|A Chain A, Micarec Ph 5.1
pdb|1NXX|A Chain A, Micarec Ph 5.5
pdb|2A9O|A Chain A, Crystal Structures Of An Activated Yycf Homologue, The
Essential Response Regulator From S.Pneumoniae In
Complex With Bef3 And The Effect Of Ph On Bef3 Binding,
Possible Phosphate In The Active Site
pdb|2A9P|A Chain A, Medium Resolution Bef3 Bound Rr02-Rec
pdb|2A9Q|A Chain A, Low Resolution Structure Rr02-rec On Bef3 Bound
Length = 120
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 43/72 (59%)
Query: 26 DIVISDVHMPDMDGFKLLELVGLEMDLPVIMMCAHGSKEVVMKGVTHDACDYLTKPVRIE 85
DI+I D+ +P++DG ++ + + +P++M+ A S+ + G+ A DY+TKP
Sbjct: 47 DIIILDLMLPEIDGLEVAKTIRKTSSVPILMLSAKDSEFDKVIGLELGADDYVTKPFSNR 106
Query: 86 ELKNIWQHVVRK 97
EL+ + ++R+
Sbjct: 107 ELQARVKALLRR 118
>pdb|2PKX|A Chain A, E.Coli Response Regulator Phop Receiver Domain
pdb|2PKX|B Chain B, E.Coli Response Regulator Phop Receiver Domain
pdb|2PL1|A Chain A, Berrylium Fluoride Activated Receiver Domain Of E.Coli
Phop
Length = 121
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 21 NKNGYDIVISDVHMPDMDGFKLLE-LVGLEMDLPVIMMCAHGSKEVVMKGVTHDACDYLT 79
N++ DI I D+ +PD DG L+ ++ LP++++ A S + ++ ++ A DY+T
Sbjct: 41 NEHIPDIAIVDLGLPDEDGLSLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVT 100
Query: 80 KPVRIEELKNIWQHVVRK 97
KP IEE+ Q + R+
Sbjct: 101 KPFHIEEVXARXQALXRR 118
>pdb|3CFY|A Chain A, Crystal Structure Of Signal Receiver Domain Of Putative
Luxo Repressor Protein From Vibrio Parahaemolyticus
Length = 137
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 39/65 (60%), Gaps = 3/65 (4%)
Query: 27 IVISDVHMPDMDGFKLLELVGLEMDLP--VIMMCAHGSKEVVMKGVTHDACDYLTKPVRI 84
++I D+ +PDM G +L+ + + D+P VI+ AHGS ++ + + A D+L KP+
Sbjct: 51 LIILDLKLPDMSGEDVLDWIN-QNDIPTSVIIATAHGSVDLAVNLIQKGAEDFLEKPINA 109
Query: 85 EELKN 89
+ LK
Sbjct: 110 DRLKT 114
>pdb|3Q9S|A Chain A, Crystal Structure Of Rra(1-215) From Deinococcus
Radiodurans
Length = 249
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 53/100 (53%), Gaps = 2/100 (2%)
Query: 2 GFSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVGLEMDLPVIMMCAHG 61
G+ V + A L ++ ++ D+++ D+ +PD DG +++ + LP+I++ A
Sbjct: 61 GYVVDHADSAXNGL--IKAREDHPDLILLDLGLPDFDGGDVVQRLRKNSALPIIVLTARD 118
Query: 62 SKEVVMKGVTHDACDYLTKPVRIEELKNIWQHVVRKRKNE 101
+ E ++ + A DYL KP +EL + +R+R +E
Sbjct: 119 TVEEKVRLLGLGADDYLIKPFHPDELLARVKVQLRQRTSE 158
>pdb|1ZIT|A Chain A, Structure Of The Receiver Domain Of Ntrc4 From Aquifex
Aeolicus
pdb|2JRL|A Chain A, Solution Structure Of The Beryllofluoride-Activated Ntrc4
Receiver Domain Dimer
pdb|2JRL|B Chain B, Solution Structure Of The Beryllofluoride-Activated Ntrc4
Receiver Domain Dimer
Length = 121
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 25 YDIVISDVHMPDMDGFKLLELVGLEM-DLPVIMMCAHGSKEVVMKGVTHDACDYLTKPVR 83
+ +++ DV MPD DG ++ + D VI++ HGS + +K + A ++L KP
Sbjct: 46 FPVIVLDVWMPDGDGVNFIDFIKENSPDSVVIVITGHGSVDTAVKAIKKGAYEFLEKPFS 105
Query: 84 IEELKNIWQH 93
+E +H
Sbjct: 106 VERFLLTIKH 115
>pdb|1KGS|A Chain A, Crystal Structure At 1.50 A Of An OmprPHOB HOMOLOG FROM
THERMOTOGA Maritima
Length = 225
Score = 40.8 bits (94), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 2/80 (2%)
Query: 25 YDIVISDVHMPDMDGFKLLELVGLE-MDLPVIMMCAHGSKEVVMKGVTHDACDYLTKPVR 83
+D+VI D+ +P DG+++L+ ++ PV+ + A E +KG+ A DYL KP
Sbjct: 47 FDVVILDIXLPVHDGWEILKSXRESGVNTPVLXLTALSDVEYRVKGLNXGADDYLPKPFD 106
Query: 84 IEELKNIWQHVVRKRKNERK 103
+ EL + ++R RK+E K
Sbjct: 107 LRELIARVRALIR-RKSESK 125
>pdb|3CU5|A Chain A, Crystal Structure Of A Two Component Transcriptional
Regulator Arac From Clostridium Phytofermentans Isdg
pdb|3CU5|B Chain B, Crystal Structure Of A Two Component Transcriptional
Regulator Arac From Clostridium Phytofermentans Isdg
Length = 141
Score = 40.4 bits (93), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 47/90 (52%), Gaps = 7/90 (7%)
Query: 8 CNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLE-LVGLEMDLPVIMMCAHGSKEVV 66
N +IAL K+ +++++DV MP MDG +L++ ++ L D VI M + KE +
Sbjct: 39 INAIQIAL------KHPPNVLLTDVRMPRMDGIELVDNILKLYPDCSVIFMSGYSDKEYL 92
Query: 67 MKGVTHDACDYLTKPVRIEELKNIWQHVVR 96
+ A Y+ KP+ E+ + + ++
Sbjct: 93 KAAIKFRAIRYVEKPIDPSEIMDALKQSIQ 122
>pdb|2JB9|A Chain A, Phob Response Regulator Receiver Domain Constitutively-
Active Double Mutant D10a And D53e.
pdb|2JB9|B Chain B, Phob Response Regulator Receiver Domain Constitutively-
Active Double Mutant D10a And D53e
Length = 127
Score = 40.4 bits (93), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 53/99 (53%), Gaps = 5/99 (5%)
Query: 2 GFSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELV---GLEMDLPVIMMC 58
GF + + A++ L N+ D+++ + +P G + ++ + + D+PV+M+
Sbjct: 26 GFQPVEAEDYDSAVNQL--NEPWPDLILLEWMLPGGSGIQFIKHLKRESMTRDIPVVMLT 83
Query: 59 AHGSKEVVMKGVTHDACDYLTKPVRIEELKNIWQHVVRK 97
A G +E ++G+ A DY+TKP +EL + V+R+
Sbjct: 84 ARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122
>pdb|2ZWM|A Chain A, Crystal Structure Of Yycf Receiver Domain From Bacillus
Subtilis
pdb|2ZWM|B Chain B, Crystal Structure Of Yycf Receiver Domain From Bacillus
Subtilis
Length = 130
Score = 40.4 bits (93), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 44/80 (55%), Gaps = 6/80 (7%)
Query: 26 DIVISDVHMPDMDGFKLLELVGLEMDLPVIMMCAHGSKEVVMKGVTHDACDYLTKPVRIE 85
D+++ D+ +P+ DG ++ V + D+P+IM+ A S+ + G+ A DY+TKP
Sbjct: 48 DLILLDIMLPNKDGVEVCREVRKKYDMPIIMLTAKDSEIDKVIGLEIGADDYVTKPFSTR 107
Query: 86 ELKNIWQHVVRKRKNERKDL 105
EL + R + N R+ L
Sbjct: 108 EL------LARVKANLRRQL 121
>pdb|3F6P|A Chain A, Crystal Structure Of Unphosphorelated Receiver Domain Of
Yycf
Length = 120
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 37/62 (59%)
Query: 26 DIVISDVHMPDMDGFKLLELVGLEMDLPVIMMCAHGSKEVVMKGVTHDACDYLTKPVRIE 85
D+++ D+ +P+ DG ++ V + D+P+IM+ A S+ + G+ A DY+TKP
Sbjct: 48 DLILLDIMLPNKDGVEVCREVRKKYDMPIIMLTAKDSEIDKVIGLEIGADDYVTKPFSTR 107
Query: 86 EL 87
EL
Sbjct: 108 EL 109
>pdb|3DZD|A Chain A, Crystal Structure Of Sigma54 Activator Ntrc4 In The
Inactive State
pdb|3DZD|B Chain B, Crystal Structure Of Sigma54 Activator Ntrc4 In The
Inactive State
Length = 368
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Query: 25 YDIVISDVHMPDMDGFKLLELVGLEM-DLPVIMMCAHGSKEVVMKGVTHDACDYLTKPVR 83
+ +++ DV PD DG ++ + D VI++ HGS + +K + A ++L KP
Sbjct: 45 FPVIVLDVWXPDGDGVNFIDFIKENSPDSVVIVITGHGSVDTAVKAIKKGAYEFLEKPFS 104
Query: 84 IEELKNIWQH 93
+E +H
Sbjct: 105 VERFLLTIKH 114
>pdb|1A2O|A Chain A, Structural Basis For Methylesterase Cheb Regulation By A
Phosphorylation-Activated Domain
pdb|1A2O|B Chain B, Structural Basis For Methylesterase Cheb Regulation By A
Phosphorylation-Activated Domain
Length = 349
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 40/71 (56%), Gaps = 4/71 (5%)
Query: 13 IALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVGLEMDLPVIMMCAHGSK--EVVMKGV 70
+A D+++ K D++ DV MP MDG LE + +PV+M+ + K EV ++ +
Sbjct: 40 VARDLIK--KFNPDVLTLDVEMPRMDGLDFLEKLMRLRPMPVVMVSSLTGKGSEVTLRAL 97
Query: 71 THDACDYLTKP 81
A D++TKP
Sbjct: 98 ELGAIDFVTKP 108
>pdb|1W25|A Chain A, Response Regulator Pled In Complex With C-digmp
pdb|1W25|B Chain B, Response Regulator Pled In Complex With C-digmp
pdb|2V0N|A Chain A, Activated Response Regulator Pled In Complex With C-Digmp
And Gtp-Alpha-S
pdb|2V0N|B Chain B, Activated Response Regulator Pled In Complex With C-Digmp
And Gtp-Alpha-S
Length = 459
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 36/62 (58%), Gaps = 7/62 (11%)
Query: 26 DIVISDVHMPDMDGFKLLELVGLEMD-----LPVIMMCAHGSKEVVMKGVTHDACDYLTK 80
DI++ DV MP MDGF + L+ D +PV+++ A + ++G+ A D+LTK
Sbjct: 47 DIILLDVMMPGMDGFTVCR--KLKDDPTTRHIPVVLITALDGRGDRIQGLESGASDFLTK 104
Query: 81 PV 82
P+
Sbjct: 105 PI 106
>pdb|1QMP|A Chain A, Phosphorylated Aspartate In The Crystal Structure Of The
Sporulation Response Regulator, Spo0a
pdb|1QMP|B Chain B, Phosphorylated Aspartate In The Crystal Structure Of The
Sporulation Response Regulator, Spo0a
pdb|1QMP|C Chain C, Phosphorylated Aspartate In The Crystal Structure Of The
Sporulation Response Regulator, Spo0a
pdb|1QMP|D Chain D, Phosphorylated Aspartate In The Crystal Structure Of The
Sporulation Response Regulator, Spo0a
Length = 130
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Query: 26 DIVISDVHMPDMDGFKLLELV--GLEMDLPVIMMCAHGSKEVVMKGVTHDACDYLTKPVR 83
DI++ + MP +DG +LE + G E VIM+ A G ++V K V A ++ KP
Sbjct: 50 DILLLXIIMPHLDGLAVLERIRAGFEHQPNVIMLTAFGQEDVTKKAVELGASYFILKPFD 109
Query: 84 IEELKNIWQHVVRK 97
+E L + + V K
Sbjct: 110 MENLAHHIRQVYGK 123
>pdb|2WB4|A Chain A, Activated Diguanylate Cyclase Pled In Complex With
C-Di-Gmp
pdb|2WB4|B Chain B, Activated Diguanylate Cyclase Pled In Complex With
C-Di-Gmp
Length = 459
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 3/60 (5%)
Query: 26 DIVISDVHMPDMDGFKL---LELVGLEMDLPVIMMCAHGSKEVVMKGVTHDACDYLTKPV 82
DI++ DV MP MDGF + L+ +PV+++ A + ++G+ A D+LTKP+
Sbjct: 48 DIILLDVMMPGMDGFTVCRKLKDDPTTRHIPVVLITALDGRGDRIQGLESGASDFLTKPI 107
>pdb|1ZY2|A Chain A, Crystal Structure Of The Phosphorylated Receiver Domain Of
The Transcription Regulator Ntrc1 From Aquifex Aeolicus
pdb|1ZY2|B Chain B, Crystal Structure Of The Phosphorylated Receiver Domain Of
The Transcription Regulator Ntrc1 From Aquifex Aeolicus
Length = 150
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 53/99 (53%), Gaps = 3/99 (3%)
Query: 2 GFSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVGLEM-DLPVIMMCAH 60
G V R + A +L ++ +++V+ + +PD++G ++L+ + + VI++ H
Sbjct: 24 GIKVESAERGKEAYKLL--SEKHFNVVLLXLLLPDVNGLEILKWIKERSPETEVIVITGH 81
Query: 61 GSKEVVMKGVTHDACDYLTKPVRIEELKNIWQHVVRKRK 99
G+ + ++ + A D+LTKP +EE++ + RK
Sbjct: 82 GTIKTAVEAMKMGAYDFLTKPCMLEEIELTINKAIEHRK 120
>pdb|1ZH2|A Chain A, Crystal Structure Of The Calcium-Bound Receiver Domain Of
Kdp Potassium Transport System Response Regulator Kdpe
pdb|1ZH2|B Chain B, Crystal Structure Of The Calcium-Bound Receiver Domain Of
Kdp Potassium Transport System Response Regulator Kdpe
pdb|1ZH4|A Chain A, Crystal Structure Of The Mg+2/bef3-bound Receiver Domain
Of Kdp Potassium Transport System Response Regulator
Kdpe
pdb|1ZH4|B Chain B, Crystal Structure Of The Mg+2/bef3-bound Receiver Domain
Of Kdp Potassium Transport System Response Regulator
Kdpe
Length = 121
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 39/72 (54%)
Query: 26 DIVISDVHMPDMDGFKLLELVGLEMDLPVIMMCAHGSKEVVMKGVTHDACDYLTKPVRIE 85
D++I D+ +PD DG + + + +PVI++ A + + + A DYL+KP I
Sbjct: 47 DLIILDLGLPDGDGIEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIG 106
Query: 86 ELKNIWQHVVRK 97
EL+ + +R+
Sbjct: 107 ELQARLRVALRR 118
>pdb|3EQ2|A Chain A, Structure Of Hexagonal Crystal Form Of Pseudomonas
Aeruginosa Rssb
pdb|3EQ2|B Chain B, Structure Of Hexagonal Crystal Form Of Pseudomonas
Aeruginosa Rssb
Length = 394
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 40/73 (54%), Gaps = 4/73 (5%)
Query: 26 DIVISDVHMPDMDGFKLLELV-GLEMDLPVIMMCAHGSKEVVMKGVTHDACDYLTKPVRI 84
D+VI D+ P +DG +L+ + + P+I++ G ++ + A DYL KP +
Sbjct: 51 DLVICDLRXPQIDGLELIRRIRQTASETPIIVLSGAGVXSDAVEALRLGAADYLIKP--L 108
Query: 85 EELKNIWQHVVRK 97
E+L + +H VR+
Sbjct: 109 EDLA-VLEHSVRR 120
>pdb|1NXT|A Chain A, Micarec Ph 4.0
pdb|2A9R|A Chain A, Rr02-Rec Phosphate In The Active Site
Length = 120
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 42/72 (58%)
Query: 26 DIVISDVHMPDMDGFKLLELVGLEMDLPVIMMCAHGSKEVVMKGVTHDACDYLTKPVRIE 85
DI+I + +P++DG ++ + + +P++M+ A S+ + G+ A DY+TKP
Sbjct: 47 DIIILXLMLPEIDGLEVAKTIRKTSSVPILMLSAKDSEFDKVIGLELGADDYVTKPFSNR 106
Query: 86 ELKNIWQHVVRK 97
EL+ + ++R+
Sbjct: 107 ELQARVKALLRR 118
>pdb|3H1G|A Chain A, Crystal Structure Of Chey Mutant T84a Of Helicobacter
Pylori
Length = 129
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 38/65 (58%), Gaps = 3/65 (4%)
Query: 27 IVISDVHMPDMDGFKLLELVGLEM---DLPVIMMCAHGSKEVVMKGVTHDACDYLTKPVR 83
++I+D +MP+M+G L++ V + ++P+IM+ A G K V+ + +Y+ KP
Sbjct: 54 VLITDWNMPEMNGLDLVKKVRSDSRFKEIPIIMITAEGGKAEVITALKAGVNNYIVKPFT 113
Query: 84 IEELK 88
+ LK
Sbjct: 114 PQVLK 118
>pdb|1MVO|A Chain A, Crystal Structure Of The Phop Receiver Domain From
Bacillus Subtilis
Length = 136
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 50/97 (51%), Gaps = 3/97 (3%)
Query: 2 GFSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLL-ELVGLEMDLPVIMMCAH 60
G+ V + E AL T K D+++ DV +P +DG ++ +L ++ P++M+ A
Sbjct: 27 GYDVITASDGEEALKKAETEKP--DLIVLDVMLPKLDGIEVCKQLRQQKLMFPILMLTAK 84
Query: 61 GSKEVVMKGVTHDACDYLTKPVRIEELKNIWQHVVRK 97
+ + G+ A DY+TKP E+ + ++R+
Sbjct: 85 DEEFDKVLGLELGADDYMTKPFSPREVNARVKAILRR 121
>pdb|3F7A|A Chain A, Structure Of Orthorhombic Crystal Form Of Pseudomonas
Aeruginosa Rssb
pdb|3F7A|B Chain B, Structure Of Orthorhombic Crystal Form Of Pseudomonas
Aeruginosa Rssb
Length = 394
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 40/73 (54%), Gaps = 4/73 (5%)
Query: 26 DIVISDVHMPDMDGFKLLELV-GLEMDLPVIMMCAHGSKEVVMKGVTHDACDYLTKPVRI 84
D+VI D+ P +DG +L+ + + P+I++ G ++ + A DYL KP +
Sbjct: 51 DLVICDLRXPQIDGLELIRRIRQTASETPIIVLSGAGVMSDAVEALRLGAADYLIKP--L 108
Query: 85 EELKNIWQHVVRK 97
E+L + +H VR+
Sbjct: 109 EDLA-VLEHSVRR 120
>pdb|3DGE|C Chain C, Structure Of A Histidine Kinase-response Regulator Complex
Reveals Insights Into Two-component Signaling And A
Novel Cis- Autophosphorylation Mechanism
pdb|3DGE|D Chain D, Structure Of A Histidine Kinase-response Regulator Complex
Reveals Insights Into Two-component Signaling And A
Novel Cis- Autophosphorylation Mechanism
pdb|3DGF|C Chain C, Structure Of A Histidine Kinase-Response Regulator Complex
Reveals Insights Into Two-Component Signaling And A
Novel Cis- Autophosphorylation Mechanism
Length = 122
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 53/96 (55%), Gaps = 9/96 (9%)
Query: 2 GFSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVGLEMD---LPVIMMC 58
G+ V + +IAL+ L ++ D+++ D+ MP MDGF +L+ + + + +PVI++
Sbjct: 26 GYEVIEAENGQIALEKL--SEFTPDLIVLDIMMPVMDGFTVLKKLQEKEEWKRIPVIVLT 83
Query: 59 AHGSKEVVMKGVTHDACDYLTKPVR----IEELKNI 90
A G +E ++ A + KP IEE+K++
Sbjct: 84 AKGGEEDESLALSLGARKVMRKPFSPSQFIEEVKHL 119
>pdb|1S8N|A Chain A, Crystal Structure Of Rv1626 From Mycobacterium
Tuberculosis
pdb|1SD5|A Chain A, Crystal Structure Of Rv1626
Length = 205
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 31/62 (50%)
Query: 26 DIVISDVHMPDMDGFKLLELVGLEMDLPVIMMCAHGSKEVVMKGVTHDACDYLTKPVRIE 85
D+VI DV MP DG + + P++++ A +++V + A YL KP I
Sbjct: 60 DLVIMDVKMPRRDGIDAASEIASKRIAPIVVLTAFSQRDLVERARDAGAMAYLVKPFSIS 119
Query: 86 EL 87
+L
Sbjct: 120 DL 121
>pdb|1F51|E Chain E, A Transient Interaction Between Two Phosphorelay Proteins
Trapped In A Crystal Lattice Reveals The Mechanism Of
Molecular Recognition And Phosphotransfer In Singal
Transduction
pdb|1F51|F Chain F, A Transient Interaction Between Two Phosphorelay Proteins
Trapped In A Crystal Lattice Reveals The Mechanism Of
Molecular Recognition And Phosphotransfer In Singal
Transduction
pdb|1F51|G Chain G, A Transient Interaction Between Two Phosphorelay Proteins
Trapped In A Crystal Lattice Reveals The Mechanism Of
Molecular Recognition And Phosphotransfer In Singal
Transduction
pdb|1F51|H Chain H, A Transient Interaction Between Two Phosphorelay Proteins
Trapped In A Crystal Lattice Reveals The Mechanism Of
Molecular Recognition And Phosphotransfer In Singal
Transduction
Length = 119
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 50/89 (56%), Gaps = 3/89 (3%)
Query: 2 GFSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLE-LVGLEMDLPVIMMCAH 60
G+ + ALD++ K D+V+ D+ +P MDG ++L+ + ++ ++ VI+M A+
Sbjct: 25 GYQTFQAANGLQALDIV--TKERPDLVLLDMKIPGMDGIEILKRMKVIDENIRVIIMTAY 82
Query: 61 GSKEVVMKGVTHDACDYLTKPVRIEELKN 89
G +++ + A + KP I+E+++
Sbjct: 83 GELDMIQESKELGALTHFAKPFDIDEIRD 111
>pdb|3Q15|C Chain C, Crystal Structure Of Raph Complexed With Spo0f
pdb|3Q15|D Chain D, Crystal Structure Of Raph Complexed With Spo0f
Length = 126
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 50/89 (56%), Gaps = 3/89 (3%)
Query: 2 GFSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLE-LVGLEMDLPVIMMCAH 60
G+ + ALD++ K D+V+ D+ +P MDG ++L+ + ++ ++ VI+M A+
Sbjct: 29 GYQTFQAANGLQALDIV--TKERPDLVLLDMKIPGMDGIEILKRMKVIDENIRVIIMTAY 86
Query: 61 GSKEVVMKGVTHDACDYLTKPVRIEELKN 89
G +++ + A + KP I+E+++
Sbjct: 87 GELDMIQESKELGALTHFAKPFDIDEIRD 115
>pdb|1SRR|A Chain A, Crystal Structure Of A Phosphatase Resistant Mutant Of
Sporulation Response Regulator Spo0f From Bacillus
Subtilis
pdb|1SRR|B Chain B, Crystal Structure Of A Phosphatase Resistant Mutant Of
Sporulation Response Regulator Spo0f From Bacillus
Subtilis
pdb|1SRR|C Chain C, Crystal Structure Of A Phosphatase Resistant Mutant Of
Sporulation Response Regulator Spo0f From Bacillus
Subtilis
pdb|1PEY|A Chain A, Crystal Structure Of The Response Regulator Spo0f
Complexed With Mn2+
pdb|1PEY|B Chain B, Crystal Structure Of The Response Regulator Spo0f
Complexed With Mn2+
pdb|1PEY|C Chain C, Crystal Structure Of The Response Regulator Spo0f
Complexed With Mn2+
Length = 124
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 50/89 (56%), Gaps = 3/89 (3%)
Query: 2 GFSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLE-LVGLEMDLPVIMMCAH 60
G+ + ALD++ K D+V+ D+ +P MDG ++L+ + ++ ++ VI+M A+
Sbjct: 27 GYQTFQAANGLQALDIV--TKERPDLVLLDMKIPGMDGIEILKRMKVIDENIRVIIMTAY 84
Query: 61 GSKEVVMKGVTHDACDYLTKPVRIEELKN 89
G +++ + A + KP I+E+++
Sbjct: 85 GELDMIQESKELGALTHFAKPFDIDEIRD 113
>pdb|1PUX|A Chain A, Nmr Solution Structure Of Bef3-Activated Spo0f, 20
Conformers
pdb|1FSP|A Chain A, Nmr Solution Structure Of Bacillus Subtilis Spo0f Protein,
20 Structures
pdb|1NAT|A Chain A, Crystal Structure Of Spoof From Bacillus Subtilis
pdb|2FSP|A Chain A, Nmr Solution Structure Of Bacillus Subtilis Spo0f Protein,
Minimized Average Structure
Length = 124
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 50/89 (56%), Gaps = 3/89 (3%)
Query: 2 GFSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLE-LVGLEMDLPVIMMCAH 60
G+ + ALD++ K D+V+ D+ +P MDG ++L+ + ++ ++ VI+M A+
Sbjct: 27 GYQTFQAANGLQALDIV--TKERPDLVLLDMKIPGMDGIEILKRMKVIDENIRVIIMTAY 84
Query: 61 GSKEVVMKGVTHDACDYLTKPVRIEELKN 89
G +++ + A + KP I+E+++
Sbjct: 85 GELDMIQESKELGALTHFAKPFDIDEIRD 113
>pdb|3GWG|A Chain A, Crystal Structure Of Chey Of Helicobacter Pylori
pdb|3H1E|A Chain A, Crystal Structure Of Mg(2+) And Beh(3)(-)-Bound Chey Of
Heli Pylori
Length = 129
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 27 IVISDVHMPDMDGFKLLELVGLEM---DLPVIMMCAHGSKEVVMKGVTHDACDYLTKPVR 83
++I+D +MP+M+G L++ V + ++P+IM+ G K V+ + +Y+ KP
Sbjct: 54 VLITDWNMPEMNGLDLVKKVRSDSRFKEIPIIMITTEGGKAEVITALKAGVNNYIVKPFT 113
Query: 84 IEELK 88
+ LK
Sbjct: 114 PQVLK 118
>pdb|1P2F|A Chain A, Crystal Structure Analysis Of Response Regulator Drrb, A
Thermotoga Maritima OmprPHOB HOMOLOG
Length = 220
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 46/96 (47%), Gaps = 4/96 (4%)
Query: 21 NKNGYDIVISDVHMPDMDGFKLLELVG-LEMDLPVIMMCAHGSKEVVMKGVTHDACDYLT 79
++ + +V+ DV +PD G+++ + + VI++ E V+KG A DY+T
Sbjct: 40 DEEAFHVVVLDVXLPDYSGYEICRXIKETRPETWVILLTLLSDDESVLKGFEAGADDYVT 99
Query: 80 KPVRIEELKNIWQHVVRKRKNERKDLEQSGSVEGGA 115
KP E L V R + E+K L G ++ A
Sbjct: 100 KPFNPEILL---ARVKRFLEREKKGLYDFGDLKIDA 132
>pdb|3CG4|A Chain A, Crystal Structure Of Response Regulator Receiver Domain
Protein (Chey- Like) From Methanospirillum Hungatei Jf-1
Length = 142
Score = 37.0 bits (84), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 42/89 (47%), Gaps = 5/89 (5%)
Query: 2 GFSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELV---GLEMDLPVIMMC 58
GF + + +D+L+ +G +V+ D+ P DG+ + + LE + ++ +
Sbjct: 31 GFHIISADSGGQCIDLLKKGFSG--VVLLDIXXPGXDGWDTIRAILDNSLEQGIAIVXLT 88
Query: 59 AHGSKEVVMKGVTHDACDYLTKPVRIEEL 87
A + + G+ DY+TKP E+L
Sbjct: 89 AKNAPDAKXIGLQEYVVDYITKPFDNEDL 117
>pdb|1U0S|Y Chain Y, Chemotaxis Kinase Chea P2 Domain In Complex With Response
Regulator Chey From The Thermophile Thermotoga Maritima
Length = 118
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 26 DIVISDVHMPDMDGFKLL-ELVGLEMDLPVIMMCAHGSKEVVMKGVTHDACDYLTKP 81
DIV D+ MP+M+G + E++ ++ + +I+ A G + +V++ + A D++ KP
Sbjct: 48 DIVTMDITMPEMNGIDAIKEIMKIDPNAKIIVCSAMGQQAMVIEAIKAGAKDFIVKP 104
>pdb|3TMY|A Chain A, Chey From Thermotoga Maritima (Mn-Iii)
pdb|3TMY|B Chain B, Chey From Thermotoga Maritima (Mn-Iii)
pdb|4TMY|A Chain A, Chey From Thermotoga Maritima (mg-iv)
pdb|4TMY|B Chain B, Chey From Thermotoga Maritima (mg-iv)
pdb|1TMY|A Chain A, Chey From Thermotoga Maritima (Apo-I)
pdb|2TMY|A Chain A, Chey From Thermotoga Maritima (Apo-Ii)
Length = 120
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 26 DIVISDVHMPDMDGFKLL-ELVGLEMDLPVIMMCAHGSKEVVMKGVTHDACDYLTKP 81
DIV D+ MP+M+G + E++ ++ + +I+ A G + +V++ + A D++ KP
Sbjct: 49 DIVTMDITMPEMNGIDAIKEIMKIDPNAKIIVCSAMGQQAMVIEAIKAGAKDFIVKP 105
>pdb|3M6M|D Chain D, Crystal Structure Of Rpff Complexed With Rec Domain Of
Rpfc
pdb|3M6M|E Chain E, Crystal Structure Of Rpff Complexed With Rec Domain Of
Rpfc
pdb|3M6M|F Chain F, Crystal Structure Of Rpff Complexed With Rec Domain Of
Rpfc
Length = 143
Score = 36.6 bits (83), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 44/92 (47%), Gaps = 9/92 (9%)
Query: 2 GFSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELV------GLEMDLPVI 55
G V N AE LD + + YD VI D+HMP M+G +L+ + G+ PV+
Sbjct: 38 GHKVLCVNGAEQVLDAM--AEEDYDAVIVDLHMPGMNGLDMLKQLRVMQASGMRYT-PVV 94
Query: 56 MMCAHGSKEVVMKGVTHDACDYLTKPVRIEEL 87
++ A + E + A +L KPV +L
Sbjct: 95 VLSADVTPEAIRACEQAGARAFLAKPVVAAKL 126
>pdb|2QXY|A Chain A, Crystal Structure Of A Response Regulator From Thermotoga
Maritima
pdb|2QXY|B Chain B, Crystal Structure Of A Response Regulator From Thermotoga
Maritima
Length = 142
Score = 36.2 bits (82), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 52/111 (46%), Gaps = 8/111 (7%)
Query: 2 GFSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVGLEM-DLPVIMMCAH 60
GF+V + A LR K D+V DV + + L+ + E D V ++ A+
Sbjct: 28 GFNVIWAKNEQEAFTFLRREK--IDLVFVDVFEGE-ESLNLIRRIREEFPDTKVAVLSAY 84
Query: 61 GSKEVVMKGVTHDACDYLTKPVR----IEELKNIWQHVVRKRKNERKDLEQ 107
K++++ V A DY+ KP R +E +K I R + RK++E+
Sbjct: 85 VDKDLIINSVKAGAVDYILKPFRLDYLLERVKKIISSTPRVTVSLRKNIEE 135
>pdb|2JVI|A Chain A, Nmr Solution Structure Of The Hyper-Sporulation Response
Regulator Spo0f Mutant H101a From Bacillus Subtilis
Length = 132
Score = 36.2 bits (82), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 48/89 (53%), Gaps = 3/89 (3%)
Query: 2 GFSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLE-LVGLEMDLPVIMMCAH 60
G+ + ALD+ K D+V+ D+ +P MDG ++L+ + ++ ++ VI+M A+
Sbjct: 27 GYQTFQAANGLQALDI--VTKERPDLVLLDMKIPGMDGIEILKRMKVIDENIRVIIMTAY 84
Query: 61 GSKEVVMKGVTHDACDYLTKPVRIEELKN 89
G +++ + A KP I+E+++
Sbjct: 85 GELDMIQESKELGALTAFAKPFDIDEIRD 113
>pdb|2JVJ|A Chain A, Nmr Solution Structure Of The Hyper-Sporulation Response
Regulator Spo0f Mutant I90a From Bacillus Subtilis
Length = 132
Score = 36.2 bits (82), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 49/89 (55%), Gaps = 3/89 (3%)
Query: 2 GFSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLE-LVGLEMDLPVIMMCAH 60
G+ + ALD++ K D+V+ D+ +P MDG ++L+ + ++ ++ VI+M A+
Sbjct: 27 GYQTFQAANGLQALDIV--TKERPDLVLLDMKIPGMDGIEILKRMKVIDENIRVIIMTAY 84
Query: 61 GSKEVVMKGVTHDACDYLTKPVRIEELKN 89
G ++ + A + KP I+E+++
Sbjct: 85 GELDMAQESKELGALTHFAKPFDIDEIRD 113
>pdb|3NNS|A Chain A, Bef3 Activated Drrb Receiver Domain
pdb|3NNS|B Chain B, Bef3 Activated Drrb Receiver Domain
Length = 117
Score = 35.8 bits (81), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Query: 21 NKNGYDIVISDVHMPDMDGFKLLELVG-LEMDLPVIMMCAHGSKEVVMKGVTHDACDYLT 79
++ + +V+ DV +PD G+++ + + VI++ E V+KG A DY+T
Sbjct: 40 DEEAFHVVVLDVXLPDYSGYEICRXIKETRPETWVILLTLLSDDESVLKGFEAGADDYVT 99
Query: 80 KPVRIEEL 87
KP E L
Sbjct: 100 KPFNPEIL 107
>pdb|3GL9|A Chain A, The Structure Of A Histidine Kinase-Response Regulator
Complex Sheds Light Into Two-Component Signaling And
Reveals A Novel Cis Autophosphorylation Mechanism
pdb|3GL9|B Chain B, The Structure Of A Histidine Kinase-Response Regulator
Complex Sheds Light Into Two-Component Signaling And
Reveals A Novel Cis Autophosphorylation Mechanism
pdb|3GL9|C Chain C, The Structure Of A Histidine Kinase-Response Regulator
Complex Sheds Light Into Two-Component Signaling And
Reveals A Novel Cis Autophosphorylation Mechanism
pdb|3GL9|D Chain D, The Structure Of A Histidine Kinase-Response Regulator
Complex Sheds Light Into Two-Component Signaling And
Reveals A Novel Cis Autophosphorylation Mechanism
Length = 122
Score = 35.8 bits (81), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 52/96 (54%), Gaps = 9/96 (9%)
Query: 2 GFSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVGLEMD---LPVIMMC 58
G+ V + +IAL+ L ++ D+++ + MP MDGF +L+ + + + +PVI++
Sbjct: 26 GYEVIEAENGQIALEKL--SEFTPDLIVLXIMMPVMDGFTVLKKLQEKEEWKRIPVIVLT 83
Query: 59 AHGSKEVVMKGVTHDACDYLTKPVR----IEELKNI 90
A G +E ++ A + KP IEE+K++
Sbjct: 84 AKGGEEDESLALSLGARKVMRKPFSPSQFIEEVKHL 119
>pdb|3I42|A Chain A, Structure Of Response Regulator Receiver Domain
(Chey-Like) From Methylobacillus Flagellatus
Length = 127
Score = 35.4 bits (80), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 45/104 (43%), Gaps = 20/104 (19%)
Query: 1 MGFSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLL-ELVGLEMDLPVIMMCA 59
+GF AL + T GYD V D+++PD G L+ +L L M+
Sbjct: 26 LGFQADYVMSGTDALHAMSTR--GYDAVFIDLNLPDTSGLALVKQLRALPME-------- 75
Query: 60 HGSKEVVMKGVT-----HDACD----YLTKPVRIEELKNIWQHV 94
SK V + G +AC+ YL KP+ I L+ I Q +
Sbjct: 76 KTSKFVAVSGFAKNDLGKEACELFDFYLEKPIDIASLEPILQSI 119
>pdb|2JBA|A Chain A, Phob Response Regulator Receiver Domain Constitutively-
Active Double Mutant D53a And Y102c
Length = 127
Score = 35.0 bits (79), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 51/99 (51%), Gaps = 5/99 (5%)
Query: 2 GFSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELV---GLEMDLPVIMMC 58
GF + + A++ L N+ D+++ +P G + ++ + + D+PV+M+
Sbjct: 26 GFQPVEAEDYDSAVNQL--NEPWPDLILLAWMLPGGSGIQFIKHLRRESMTRDIPVVMLT 83
Query: 59 AHGSKEVVMKGVTHDACDYLTKPVRIEELKNIWQHVVRK 97
A G +E ++G+ A D +TKP +EL + V+R+
Sbjct: 84 ARGEEEDRVRGLETGADDCITKPFSPKELVARIKAVMRR 122
>pdb|2JBA|B Chain B, Phob Response Regulator Receiver Domain Constitutively-
Active Double Mutant D53a And Y102c
Length = 127
Score = 35.0 bits (79), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 51/99 (51%), Gaps = 5/99 (5%)
Query: 2 GFSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELV---GLEMDLPVIMMC 58
GF + + A++ L N+ D+++ +P G + ++ + + D+PV+M+
Sbjct: 26 GFQPVEAEDYDSAVNQL--NEPWPDLILLAWMLPGGSGIQFIKHLKRESMTRDIPVVMLT 83
Query: 59 AHGSKEVVMKGVTHDACDYLTKPVRIEELKNIWQHVVRK 97
A G +E ++G+ A D +TKP +EL + V+R+
Sbjct: 84 ARGEEEDRVRGLETGADDCITKPFSPKELVARIKAVMRR 122
>pdb|2JVK|A Chain A, Nmr Solution Structure Of The Hyper-Sporulation Response
Regulator Spo0f Mutant L66a From Bacillus Subtilis
Length = 132
Score = 35.0 bits (79), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 49/89 (55%), Gaps = 3/89 (3%)
Query: 2 GFSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLE-LVGLEMDLPVIMMCAH 60
G+ + ALD++ K D+V+ D+ +P MDG ++ + + ++ ++ VI+M A+
Sbjct: 27 GYQTFQAANGLQALDIV--TKERPDLVLLDMKIPGMDGIEIAKRMKVIDENIRVIIMTAY 84
Query: 61 GSKEVVMKGVTHDACDYLTKPVRIEELKN 89
G +++ + A + KP I+E+++
Sbjct: 85 GELDMIQESKELGALTHFAKPFDIDEIRD 113
>pdb|2QZJ|A Chain A, Crystal Structure Of A Two-Component Response Regulator
From Clostridium Difficile
pdb|2QZJ|B Chain B, Crystal Structure Of A Two-Component Response Regulator
From Clostridium Difficile
pdb|2QZJ|C Chain C, Crystal Structure Of A Two-Component Response Regulator
From Clostridium Difficile
pdb|2QZJ|D Chain D, Crystal Structure Of A Two-Component Response Regulator
From Clostridium Difficile
pdb|2QZJ|E Chain E, Crystal Structure Of A Two-Component Response Regulator
From Clostridium Difficile
pdb|2QZJ|F Chain F, Crystal Structure Of A Two-Component Response Regulator
From Clostridium Difficile
Length = 136
Score = 35.0 bits (79), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 21/96 (21%), Positives = 45/96 (46%), Gaps = 2/96 (2%)
Query: 2 GFSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVGLEMDLPVIMMCAHG 61
G S+ E A+ + +NK YD++ ++ + D DG+ L + + P++
Sbjct: 28 GISIDLAYNCEEAIGKIFSNK--YDLIFLEIILSDGDGWTLCKKIRNVTTCPIVYXTYIN 85
Query: 62 SKEVVMKGVTHDACDYLTKPVRIEELKNIWQHVVRK 97
+ ++ + DYL KP+ +E L + ++R+
Sbjct: 86 EDQSILNALNSGGDDYLIKPLNLEILYAKVKAILRR 121
>pdb|3RQI|A Chain A, Crystal Structure Of A Response Regulator Protein From
Burkholderia Pseudomallei With A Phosphorylated Aspartic
Acid, Calcium Ion And Citrate
Length = 184
Score = 34.7 bits (78), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 19/87 (21%), Positives = 43/87 (49%), Gaps = 3/87 (3%)
Query: 2 GFSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLE-LVGLEMDLPVIMMCAH 60
G++V + + + AL + K ++ + +H+ + G L+ L L+ D ++++ +
Sbjct: 31 GYAVRQAHNKDEALKLAGAEK--FEFITVXLHLGNDSGLSLIAPLCDLQPDARILVLTGY 88
Query: 61 GSKEVVMKGVTHDACDYLTKPVRIEEL 87
S ++ V A +YL KP +E +
Sbjct: 89 ASIATAVQAVKDGADNYLAKPANVESI 115
>pdb|2FTK|E Chain E, Berylloflouride Spo0f Complex With Spo0b
pdb|2FTK|F Chain F, Berylloflouride Spo0f Complex With Spo0b
pdb|2FTK|G Chain G, Berylloflouride Spo0f Complex With Spo0b
pdb|2FTK|H Chain H, Berylloflouride Spo0f Complex With Spo0b
Length = 124
Score = 34.7 bits (78), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 49/89 (55%), Gaps = 3/89 (3%)
Query: 2 GFSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLE-LVGLEMDLPVIMMCAH 60
G+ + ALD++ K D+V+ + +P MDG ++L+ + ++ ++ VI+M A+
Sbjct: 27 GYQTFQAANGLQALDIV--TKERPDLVLLXMKIPGMDGIEILKRMKVIDENIRVIIMTAY 84
Query: 61 GSKEVVMKGVTHDACDYLTKPVRIEELKN 89
G +++ + A + KP I+E+++
Sbjct: 85 GELDMIQESKELGALTHFAKPFDIDEIRD 113
>pdb|3NHZ|A Chain A, Structure Of N-Terminal Domain Of Mtra
pdb|3NHZ|B Chain B, Structure Of N-Terminal Domain Of Mtra
pdb|3NHZ|C Chain C, Structure Of N-Terminal Domain Of Mtra
pdb|3NHZ|D Chain D, Structure Of N-Terminal Domain Of Mtra
Length = 125
Score = 34.7 bits (78), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 35/61 (57%)
Query: 26 DIVISDVHMPDMDGFKLLELVGLEMDLPVIMMCAHGSKEVVMKGVTHDACDYLTKPVRIE 85
D+V+ D+ +P M+G + ++ + +P++M+ A V+ G+ A DY+ KP + +
Sbjct: 51 DLVLLDLMLPGMNGIDVCRVLRADSGVPIVMLTAKTDTVDVVLGLESGADDYIMKPFKPK 110
Query: 86 E 86
E
Sbjct: 111 E 111
>pdb|1ZGZ|A Chain A, Crystal Structure Of The Receiver Domain Of Tmao
Respiratory System Response Regulator Torr
pdb|1ZGZ|B Chain B, Crystal Structure Of The Receiver Domain Of Tmao
Respiratory System Response Regulator Torr
pdb|1ZGZ|C Chain C, Crystal Structure Of The Receiver Domain Of Tmao
Respiratory System Response Regulator Torr
pdb|1ZGZ|D Chain D, Crystal Structure Of The Receiver Domain Of Tmao
Respiratory System Response Regulator Torr
Length = 122
Score = 34.7 bits (78), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 34/62 (54%)
Query: 26 DIVISDVHMPDMDGFKLLELVGLEMDLPVIMMCAHGSKEVVMKGVTHDACDYLTKPVRIE 85
D+++ D+++PD +G L + + +I++ + + G+ A DY+TKP+ +
Sbjct: 48 DLILLDINLPDENGLXLTRALRERSTVGIILVTGRSDRIDRIVGLEXGADDYVTKPLELR 107
Query: 86 EL 87
EL
Sbjct: 108 EL 109
>pdb|3H1F|A Chain A, Crystal Structure Of Chey Mutant D53a Of Helicobacter
Pylori
Length = 129
Score = 34.3 bits (77), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
Query: 27 IVISDVHMPDMDGFKLLELVGLEM---DLPVIMMCAHGSKEVVMKGVTHDACDYLTKPVR 83
++I+ +MP+M+G L++ V + ++P+IM+ G K V+ + +Y+ KP
Sbjct: 54 VLITAWNMPEMNGLDLVKKVRSDSRFKEIPIIMITTEGGKAEVITALKAGVNNYIVKPFT 113
Query: 84 IEELK 88
+ LK
Sbjct: 114 PQVLK 118
>pdb|3CWO|X Chain X, A BetaALPHA-Barrel Built By The Combination Of Fragments
From Different Folds
Length = 237
Score = 33.9 bits (76), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Query: 26 DIVISDVHMPDMDGFKLL-ELVGLEMDLPVIMMCAHGSKEVVMKGVTHDACDYLTKPVRI 84
DIV D+ MP+M+G + E++ ++ + +I+ A G + +V++ + A D++ +
Sbjct: 27 DIVTMDITMPEMNGIDAIKEIMKIDPNAKIIVCSAMGQQAMVIEAIKAGAKDFIVNTAAV 86
Query: 85 EELKNIWQ 92
E I Q
Sbjct: 87 ENPSLITQ 94
>pdb|4EUK|A Chain A, Crystal Structure
Length = 153
Score = 33.5 bits (75), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 43/102 (42%), Gaps = 29/102 (28%)
Query: 21 NKNGYDIVISDVHMPDMDGFKLLELV---------------GLEMD-------------- 51
N + YD+V+ DV MP +DG K L+ G+++
Sbjct: 49 NSSSYDLVLMDVCMPVLDGLKATRLIRSYEETGNWNAAIEAGVDISTSENEQVCMRPTNR 108
Query: 52 LPVIMMCAHGSKEVVMKGVTHDACDYLTKPVRIEELKNIWQH 93
LP+I M A+ E + + +++KPV +++L+ Q
Sbjct: 109 LPIIAMTANTLAESSEECYANGMDSFISKPVTLQKLRECLQQ 150
>pdb|3EOD|A Chain A, Crystal Structure Of N-Terminal Domain Of E. Coli Rssb
Length = 130
Score = 33.1 bits (74), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 26 DIVISDVHMPDMDGFKLLELVGLEMD-LPVIMMCAHGSKEVVMKGVTHDACDYLTKPVR 83
D++I D+ MP M+G KLLE + D PV+++ A + + K + D L KPV+
Sbjct: 53 DLMICDIAMPRMNGLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVK 111
>pdb|2QR3|A Chain A, Crystal Structure Of The N-Terminal Signal Receiver Domain
Of Two- Component System Response Regulator From
Bacteroides Fragilis
Length = 140
Score = 32.7 bits (73), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 13/54 (24%), Positives = 30/54 (55%)
Query: 51 DLPVIMMCAHGSKEVVMKGVTHDACDYLTKPVRIEELKNIWQHVVRKRKNERKD 104
DLPV++ A+ ++ ++G+ A D++ KP ++L + + K+ +K+
Sbjct: 80 DLPVVLFTAYADIDLAVRGIKEGASDFVVKPWDNQKLLETLLNAASQAKDGKKE 133
>pdb|1NY5|A Chain A, Crystal Structure Of Sigm54 Activator (Aaa+ Atpase) In The
Inactive State
pdb|1NY5|B Chain B, Crystal Structure Of Sigm54 Activator (Aaa+ Atpase) In The
Inactive State
Length = 387
Score = 32.7 bits (73), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 26/46 (56%)
Query: 54 VIMMCAHGSKEVVMKGVTHDACDYLTKPVRIEELKNIWQHVVRKRK 99
VI++ HG+ + ++ + A D+LTKP +EE++ + RK
Sbjct: 75 VIVITGHGTIKTAVEAMKMGAYDFLTKPCMLEEIELTINKAIEHRK 120
>pdb|3T8Y|A Chain A, Crystal Structure Of The Response Regulator Domain Of
Thermotoga Maritima Cheb
pdb|3T8Y|B Chain B, Crystal Structure Of The Response Regulator Domain Of
Thermotoga Maritima Cheb
Length = 164
Score = 32.3 bits (72), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 35/58 (60%), Gaps = 2/58 (3%)
Query: 26 DIVISDVHMPDMDGFKLLELVGLEMDLPVIMMCAHGSK--EVVMKGVTHDACDYLTKP 81
D++ D+ MP+++G + L+L+ + VIM+ + + + ++ + + A D++TKP
Sbjct: 73 DVITMDIEMPNLNGIEALKLIMKKAPTRVIMVSSLTEEGAAITIEALRNGAVDFITKP 130
>pdb|3BRE|A Chain A, Crystal Structure Of P.Aeruginosa Pa3702
pdb|3BRE|B Chain B, Crystal Structure Of P.Aeruginosa Pa3702
Length = 358
Score = 31.6 bits (70), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 4/71 (5%)
Query: 27 IVISDVHMPDMDGFKLLELV---GLEMDLPVIMMCAHGSKEVVMKGVTHDACDYLTK-PV 82
+++ D+ MP +DG LL D+P+I++ V A DYL K P
Sbjct: 66 VILQDLVMPGVDGLTLLAAYRGNPATRDIPIIVLSTKEEPTVKSAAFAAGANDYLVKLPD 125
Query: 83 RIEELKNIWQH 93
IE + I H
Sbjct: 126 AIELVARIRYH 136
>pdb|1OXB|B Chain B, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P2(1)2(1)2(1)
pdb|1OXK|B Chain B, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|D Chain D, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|F Chain F, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|H Chain H, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|J Chain J, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|L Chain L, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
Length = 134
Score = 31.6 bits (70), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 6/78 (7%)
Query: 18 LRTNKNGYDIVISDVHMPDMDGFKLLELVGLEMDL----PVIMMCAHGSKEVVMKGVTHD 73
L + Y+++ DV MP +DG LL + DL P++ + A + + +
Sbjct: 45 LTSKGENYNMIFMDVQMPKVDG--LLSTKMIRRDLGYTSPIVALTAFADDSNIKECLESG 102
Query: 74 ACDYLTKPVRIEELKNIW 91
+L+KP++ +LK I
Sbjct: 103 MNGFLSKPIKRPKLKTIL 120
>pdb|2R25|B Chain B, Complex Of Ypd1 And Sln1-R1 With Bound Mg2+ And Bef3-
Length = 133
Score = 31.6 bits (70), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 6/78 (7%)
Query: 18 LRTNKNGYDIVISDVHMPDMDGFKLLELVGLEMDL----PVIMMCAHGSKEVVMKGVTHD 73
L + Y+++ DV MP +DG LL + DL P++ + A + + +
Sbjct: 46 LTSKGENYNMIFMDVQMPKVDG--LLSTKMIRRDLGYTSPIVALTAFADDSNIKECLESG 103
Query: 74 ACDYLTKPVRIEELKNIW 91
+L+KP++ +LK I
Sbjct: 104 MNGFLSKPIKRPKLKTIL 121
>pdb|2LLE|A Chain A, Computational Design Of An Eight-Stranded
(BetaALPHA)-Barrel From Fragments Of Different Folds
Length = 234
Score = 31.6 bits (70), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Query: 26 DIVISDVHMPDMDGFKLL-ELVGLEMDLPVIMMCAHGSKEVVMKGVTHDACDYLTKPVRI 84
DIV D+ MP+M+G + E++ ++ + +I+ A G + +V++ + A ++ +
Sbjct: 27 DIVTMDITMPEMNGIDAIKEIMKIDPNAKIIVCSAMGQQAMVIEAIKAGAKGFIVNTAAV 86
Query: 85 EELKNIWQ 92
E I Q
Sbjct: 87 ENPSLITQ 94
>pdb|3HV2|A Chain A, Crystal Structure Of Signal Receiver Domain Of Hd Domain-
Containing Protein From Pseudomonas Fluorescens Pf-5
pdb|3HV2|B Chain B, Crystal Structure Of Signal Receiver Domain Of Hd Domain-
Containing Protein From Pseudomonas Fluorescens Pf-5
Length = 153
Score = 31.6 bits (70), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 51/107 (47%), Gaps = 4/107 (3%)
Query: 1 MGFSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVGLEMDLPV-IMMCA 59
+ +++ A AL +L + + D+VIS H+P MDG LL + + I++
Sbjct: 37 LPYTLHFARDATQALQLLASRE--VDLVISAAHLPQMDGPTLLARIHQQYPSTTRILLTG 94
Query: 60 HGSKEVVMKGVTH-DACDYLTKPVRIEELKNIWQHVVRKRKNERKDL 105
+++ K + + YL+KP +EL + + + +ER+ L
Sbjct: 95 DPDLKLIAKAINEGEIYRYLSKPWDDQELLLALRQALEHQHSERERL 141
>pdb|3EUL|A Chain A, Structure Of The Signal Receiver Domain Of The Putative
Response Regulator Narl From Mycobacterium Tuberculosis
pdb|3EUL|B Chain B, Structure Of The Signal Receiver Domain Of The Putative
Response Regulator Narl From Mycobacterium Tuberculosis
pdb|3EUL|C Chain C, Structure Of The Signal Receiver Domain Of The Putative
Response Regulator Narl From Mycobacterium Tuberculosis
pdb|3EUL|D Chain D, Structure Of The Signal Receiver Domain Of The Putative
Response Regulator Narl From Mycobacterium Tuberculosis
Length = 152
Score = 31.6 bits (70), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 43/89 (48%), Gaps = 4/89 (4%)
Query: 5 VTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELV-GLEMDLPVIMMCAHGSK 63
V + + AL++++ + D+ + D MP MDG ++ V E+ V+++ AH
Sbjct: 44 VGEADDGAAALELIKAHLP--DVALLDYRMPGMDGAQVAAAVRSYELPTRVLLISAHDEP 101
Query: 64 EVVMKGVTHDACDYLTK-PVRIEELKNIW 91
+V + + A +L K R E +K +
Sbjct: 102 AIVYQALQQGAAGFLLKDSTRTEIVKAVL 130
>pdb|3C97|A Chain A, Crystal Structure Of The Response Regulator Receiver
Domain Of A Signal Transduction Histidine Kinase From
Aspergillus Oryzae
Length = 140
Score = 31.2 bits (69), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 36/77 (46%), Gaps = 19/77 (24%)
Query: 25 YDIVISDVHMPDMDGFKLL-ELVGLEMDLPVIMMCAHGSKEVVMKGVTHDACD------- 76
+D++I D+ MP MDG + + E+ E H +K + +T D D
Sbjct: 55 FDVIIMDIQMPVMDGLEAVSEIRNYER--------THNTKRASIIAITADTIDDDRPGAE 106
Query: 77 ---YLTKPVRIEELKNI 90
Y++KP+ +L+++
Sbjct: 107 LDEYVSKPLNPNQLRDV 123
>pdb|3N53|A Chain A, Crystal Structure Of A Response Regulator Receiver
Modulated Diguanylate Cyclase From Pelobacter
Carbinolicus
pdb|3N53|B Chain B, Crystal Structure Of A Response Regulator Receiver
Modulated Diguanylate Cyclase From Pelobacter
Carbinolicus
Length = 140
Score = 31.2 bits (69), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 23/37 (62%)
Query: 51 DLPVIMMCAHGSKEVVMKGVTHDACDYLTKPVRIEEL 87
++P+I++ + KE ++ G+ A DYLTKP +L
Sbjct: 76 NVPLILLFSSEHKEAIVNGLHSGADDYLTKPFNRNDL 112
>pdb|3HEB|A Chain A, Crystal Structure Of Response Regulator Receiver Domain
From Rhodospirillum Rubrum
pdb|3HEB|B Chain B, Crystal Structure Of Response Regulator Receiver Domain
From Rhodospirillum Rubrum
Length = 152
Score = 31.2 bits (69), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
Query: 27 IVISDVHMPDMDGFKLLELVGLEMDL---PVIMMCAHGSKEVVMKGVTHDACDYLTKPVR 83
+V+ D+++PD G +L+LV PV+++ + + + A Y+TKPV
Sbjct: 62 LVLLDLNLPDXTGIDILKLVKENPHTRRSPVVILTTTDDQREIQRCYDLGANVYITKPVN 121
Query: 84 IEELKNIWQHV 94
E N + +
Sbjct: 122 YENFANAIRQL 132
>pdb|1M5T|A Chain A, Crystal Structure Of The Response Regulator Divk
pdb|1M5U|A Chain A, Crystal Structure Of The Response Regulator Divk.
Structure At Ph 8.0 In The Apo-Form
pdb|1MAV|A Chain A, Crystal Structure Of The Response Regulator Divk At Ph 6.0
In Complex With Mn2+
pdb|1MB0|A Chain A, Crystal Structure Of The Response Regulator Divk At Ph 8.0
In Complex With Mn2+
pdb|1MB3|A Chain A, Crystal Structure Of The Response Regulator Divk At Ph 8.5
In Complex With Mg2+
Length = 124
Score = 30.8 bits (68), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 47/90 (52%), Gaps = 13/90 (14%)
Query: 2 GFSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVGLEMDL---PVIMMC 58
G+ + AL + R NK D+++ D+ +P++ G ++ + + + DL PV+ +
Sbjct: 25 GYETLQTREGLSALSIARENKP--DLILMDIQLPEISGLEVTKWLKEDDDLAHIPVVAVT 82
Query: 59 AH---GSKEVVMKGVTHDACD-YLTKPVRI 84
A G +E + +G C+ Y++KP+ +
Sbjct: 83 AFAMKGDEERIREG----GCEAYISKPISV 108
>pdb|3B2N|A Chain A, Crystal Structure Of Dna-binding Response Regulator, Luxr
Family, From Staphylococcus Aureus
Length = 133
Score = 30.8 bits (68), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 26 DIVISDVHMPDMDGFKLL-ELVGLEMDLPVIMMCAHGSKEVVMKGVTHDACDYLTKPVRI 84
++VI D+ MP M G ++L E+ +++ VI++ K V +D Y+ K I
Sbjct: 51 NVVILDIEMPGMTGLEVLAEIRKKHLNIKVIIVTTFKRPGYFEKAVVNDVDAYVLKERSI 110
Query: 85 EEL 87
EEL
Sbjct: 111 EEL 113
>pdb|3A0U|A Chain A, Crystal Structure Of Response Regulator Protein Trra
(Tm1360) From Thermotoga Maritima In Complex With
Mg(2+)- Bef (Wild Type)
Length = 116
Score = 30.8 bits (68), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 40/88 (45%), Gaps = 5/88 (5%)
Query: 2 GFSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLL-ELVGLEMDLPVIMMCAH 60
G+ + E AL + YD+VI D+ MP + G ++ E+ + D +I++ A+
Sbjct: 25 GYEIDTAENGEEALKKFFSG--NYDLVILDIEMPGISGLEVAGEIRKKKKDAKIILLTAY 82
Query: 61 GSKEVVMKGVTHDACDYLTKPVRIEELK 88
+ D +Y+ K +ELK
Sbjct: 83 SHYRSDLSSWAAD--EYVVKSFNFDELK 108
>pdb|3EQZ|A Chain A, Crystal Structure Of A Response Regulator From Colwellia
Psychrerythraea
pdb|3EQZ|B Chain B, Crystal Structure Of A Response Regulator From Colwellia
Psychrerythraea
Length = 135
Score = 30.0 bits (66), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 8/79 (10%)
Query: 17 MLRTNKNGYDIVISDVHMPDMDGFKLLELVGLEMDLPVIMMCAHG-------SKEVVMKG 69
L + N DI+I D+ MPDMDG +++ + E P ++ G S E +
Sbjct: 39 FLTLSLNKQDIIILDLMMPDMDGIEVIRHLA-EHKSPASLILISGYDSGVLHSAETLALS 97
Query: 70 VTHDACDYLTKPVRIEELK 88
+ + TKP+ E L
Sbjct: 98 CGLNVINTFTKPINTEVLT 116
>pdb|1K66|A Chain A, Crystal Structure Of The Cyanobacterial Phytochrome
Response Regulator, Rcpb
pdb|1K66|B Chain B, Crystal Structure Of The Cyanobacterial Phytochrome
Response Regulator, Rcpb
Length = 149
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/103 (19%), Positives = 48/103 (46%), Gaps = 11/103 (10%)
Query: 5 VTKCNRAEIALDMLRTNKNGYD--------IVISDVHMPDMDGFKLLELVGLEMDL---P 53
+ +C + ALD L + + +++ D+++P DG ++L+ + + L P
Sbjct: 35 IYRCITGDQALDFLYQTGSYCNPDIAPRPAVILLDLNLPGTDGREVLQEIKQDEVLKKIP 94
Query: 54 VIMMCAHGSKEVVMKGVTHDACDYLTKPVRIEELKNIWQHVVR 96
V++M + + + ++ Y+ KP+ I+ L Q ++
Sbjct: 95 VVIMTTSSNPKDIEICYSYSISSYIVKPLEIDRLTETVQTFIK 137
>pdb|3K46|A Chain A, Crystal Structure Of Full-Length E. Coli
Beta-Glucuronidase
pdb|3K46|B Chain B, Crystal Structure Of Full-Length E. Coli
Beta-Glucuronidase
pdb|3K4D|A Chain A, Crystal Structure Of E. Coli Beta-Glucuronidase With The
Glucaro-D- Lactam Inhibitor Bound
pdb|3K4D|B Chain B, Crystal Structure Of E. Coli Beta-Glucuronidase With The
Glucaro-D- Lactam Inhibitor Bound
Length = 605
Score = 28.9 bits (63), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 35/79 (44%), Gaps = 7/79 (8%)
Query: 143 EEAEKRLKKPRLVWSVELHQQFVSAVKELGFDK-AGPKKILELMNIPGLTRENVASHLQK 201
E AEK L+K L W +LHQ + + E G D AG L M + E + L
Sbjct: 481 ETAEKVLEKELLAWQEKLHQPII--ITEYGVDTLAG----LHSMYTDMWSEEYQCAWLDM 534
Query: 202 HRLYLSRLSGVSPQQGNSF 220
+ R+S V +Q +F
Sbjct: 535 YHRVFDRVSAVVGEQVWNF 553
>pdb|3KYJ|B Chain B, Crystal Structure Of The P1 Domain Of Chea3 In Complex
With Chey6 From R. Sphaeroides
Length = 145
Score = 28.5 bits (62), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 6/70 (8%)
Query: 5 VTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVGLEMDLPVIMMCAHGSKE 64
V + + ALD L N D+++ D+ MP MDG + L L+ + M+ +
Sbjct: 42 VAQAANGQEALDKLAAQPN-VDLILLDIEMPVMDGMEFLRHAKLKTRAKICMLSS----- 95
Query: 65 VVMKGVTHDA 74
V + G H A
Sbjct: 96 VAVSGSPHAA 105
>pdb|1XHF|A Chain A, Crystal Structure Of The Bef3-Activated Receiver Domain Of
Redox Response Regulator Arca
pdb|1XHF|B Chain B, Crystal Structure Of The Bef3-Activated Receiver Domain Of
Redox Response Regulator Arca
Length = 123
Score = 28.5 bits (62), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 25 YDI--VISDVHMPDMDGFKLLELVGLEMDLPVIMMCAHGSKEVVMKGVTHDACDYLTKPV 82
YDI VI D+++P +G L + + ++ + + ++ + G+ A DY+TKP
Sbjct: 46 YDINLVIXDINLPGKNGLLLARELREQANVALXFLTGRDNEVDKILGLEIGADDYITKPF 105
Query: 83 RIEEL 87
EL
Sbjct: 106 NPREL 110
>pdb|3C3M|A Chain A, Crystal Structure Of The N-Terminal Domain Of Response
Regulator Receiver Protein From Methanoculleus
Marisnigri Jr1
Length = 138
Score = 28.1 bits (61), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 37/87 (42%), Gaps = 3/87 (3%)
Query: 21 NKNGYDIVISDVHMPDMDGFKLLELVGLE---MDLPVIMMCAHGSKEVVMKGVTHDACDY 77
N D+V+ D+ DG++ LE + + D+PV+ + A DY
Sbjct: 44 NATPPDLVLLDIXXEPXDGWETLERIKTDPATRDIPVLXLTAKPLTPEEANEYGSYIEDY 103
Query: 78 LTKPVRIEELKNIWQHVVRKRKNERKD 104
+ KP +L +HV+ +R + D
Sbjct: 104 ILKPTTHHQLYEAIEHVLARRHSIAAD 130
>pdb|3FDG|A Chain A, The Crystal Structure Of The Dipeptidase Ac, Metallo
Peptidase. Merops Family M19
pdb|3FDG|B Chain B, The Crystal Structure Of The Dipeptidase Ac, Metallo
Peptidase. Merops Family M19
Length = 355
Score = 27.7 bits (60), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 5 VTKCNRAEIALDMLRTNKNGYDIV 28
V +CNR +I LD+ N+ G+D V
Sbjct: 196 VAECNRLKIMLDLSHLNEKGFDDV 219
>pdb|3LY0|A Chain A, Crystal Structure Of Metallo Peptidase From Rhodobacter
Sphaeroides Liganded With Phosphinate Mimic Of Dipeptide
L- Ala-D-Ala
pdb|3LY0|B Chain B, Crystal Structure Of Metallo Peptidase From Rhodobacter
Sphaeroides Liganded With Phosphinate Mimic Of Dipeptide
L- Ala-D-Ala
Length = 364
Score = 27.7 bits (60), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 5 VTKCNRAEIALDMLRTNKNGYDIV 28
V +CNR +I LD+ N+ G+D V
Sbjct: 198 VAECNRLKIMLDLSHLNEKGFDDV 221
>pdb|3H5I|A Chain A, Crystal Structure Of The N-Terminal Domain Of A Response
RegulatorSENSORY BOXGGDEF 3-Domain Protein From
Carboxydothermus Hydrogenoformans
Length = 140
Score = 27.7 bits (60), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 46/97 (47%), Gaps = 4/97 (4%)
Query: 2 GFSVTKCNRAEIALDMLRTNKNGY-DIVISDVHMPD-MDGFKLLELVGLEMDLPVIMMCA 59
G++V E A++ + + Y D+++ D+ + + MDG + + +LPV+ + A
Sbjct: 29 GYTVEIALTGEAAVE--KVSGGWYPDLILMDIELGEGMDGVQTALAIQQISELPVVFLTA 86
Query: 60 HGSKEVVMKGVTHDACDYLTKPVRIEELKNIWQHVVR 96
H VV K + A Y+ K + L I + +R
Sbjct: 87 HTEPAVVEKIRSVTAYGYVMKSATEQVLITIVEMALR 123
>pdb|3LTE|A Chain A, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|B Chain B, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|C Chain C, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|D Chain D, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|E Chain E, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|F Chain F, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|G Chain G, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|H Chain H, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|I Chain I, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|J Chain J, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|K Chain K, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|L Chain L, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|M Chain M, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|N Chain N, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|O Chain O, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|P Chain P, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|Q Chain Q, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|R Chain R, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|S Chain S, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|T Chain T, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|U Chain U, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|V Chain V, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|W Chain W, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|X Chain X, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
Length = 132
Score = 27.7 bits (60), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 38/87 (43%), Gaps = 20/87 (22%)
Query: 23 NGYD-----------IVISDVHMPDMDGFKLLELVGLE--MDLPVIMMCAHGSKEVVMKG 69
NG+D I+ D+ MP +DG ++ + + P I++ + K + +
Sbjct: 38 NGFDAGIKLSTFEPAIMTLDLSMPKLDGLDVIRSLRQNKVANQPKILVVSGLDKAKLQQA 97
Query: 70 VTHDACDYLTKPV-------RIEELKN 89
VT A DYL KP RI +L N
Sbjct: 98 VTEGADDYLEKPFDNDALLDRIHDLVN 124
>pdb|3HDG|A Chain A, Crystal Structure Of The N-Terminal Domain Of An
Uncharacterized Protein (Ws1339) From Wolinella
Succinogenes
pdb|3HDG|B Chain B, Crystal Structure Of The N-Terminal Domain Of An
Uncharacterized Protein (Ws1339) From Wolinella
Succinogenes
pdb|3HDG|D Chain D, Crystal Structure Of The N-Terminal Domain Of An
Uncharacterized Protein (Ws1339) From Wolinella
Succinogenes
pdb|3HDG|E Chain E, Crystal Structure Of The N-Terminal Domain Of An
Uncharacterized Protein (Ws1339) From Wolinella
Succinogenes
Length = 137
Score = 27.7 bits (60), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 17/73 (23%), Positives = 36/73 (49%), Gaps = 4/73 (5%)
Query: 26 DIVISDVHMPDMDGFKLLELVGLEMDLP-VIMMCAHGSKEVVMKGVTHDACDYLTKPV-- 82
D++I+D+ P + G + L+ + P VI++ A + +K + +L KP+
Sbjct: 53 DVIITDIRXPKLGGLEXLDRIKAGGAKPYVIVISAFSEXKYFIKAIELGVHLFLPKPIEP 112
Query: 83 -RIEELKNIWQHV 94
R+ E ++H+
Sbjct: 113 GRLXETLEDFRHI 125
>pdb|1XHE|A Chain A, Crystal Structure Of The Receiver Domain Of Redox Response
Regulator Arca
pdb|1XHE|B Chain B, Crystal Structure Of The Receiver Domain Of Redox Response
Regulator Arca
Length = 123
Score = 27.7 bits (60), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Query: 25 YDI--VISDVHMPDMDGFKLLELVGLEMDLPVIMMCAHGSKEVVMKGVTHDACDYLTKPV 82
YDI VI D+++P +G L + + ++ ++ + ++ + G+ A DY+TKP
Sbjct: 46 YDINLVIMDINLPGKNGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPF 105
Query: 83 RIEEL 87
EL
Sbjct: 106 NPREL 110
>pdb|3CG0|A Chain A, Crystal Structure Of Signal Receiver Domain Of Modulated
Diguanylate Cyclase From Desulfovibrio Desulfuricans
G20, An Example Of Alternate Folding
pdb|3CG0|B Chain B, Crystal Structure Of Signal Receiver Domain Of Modulated
Diguanylate Cyclase From Desulfovibrio Desulfuricans
G20, An Example Of Alternate Folding
pdb|3CG0|C Chain C, Crystal Structure Of Signal Receiver Domain Of Modulated
Diguanylate Cyclase From Desulfovibrio Desulfuricans
G20, An Example Of Alternate Folding
pdb|3CG0|D Chain D, Crystal Structure Of Signal Receiver Domain Of Modulated
Diguanylate Cyclase From Desulfovibrio Desulfuricans
G20, An Example Of Alternate Folding
Length = 140
Score = 27.3 bits (59), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 18/77 (23%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
Query: 26 DIVISDVHMPD-MDGFKLLELVGLEMDLPVIMMCAHGSKEVVMKGVTHDACDYLTKPVRI 84
DI + D+ + +DG + + +LP+I + + E + + YL KPV
Sbjct: 56 DIALVDIMLCGALDGVETAARLAAGCNLPIIFITSSQDVETFQRAKRVNPFGYLAKPVAA 115
Query: 85 EELKNIWQHVVRKRKNE 101
+ L + + K+K E
Sbjct: 116 DTLHRSIEMAIHKKKLE 132
>pdb|3KYI|B Chain B, Crystal Structure Of The Phosphorylated P1 Domain Of Chea3
In Complex With Chey6 From R. Sphaeroides
Length = 145
Score = 26.9 bits (58), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 6/70 (8%)
Query: 5 VTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVGLEMDLPVIMMCAHGSKE 64
V + + ALD L N D+++ ++ MP MDG + L L+ + M+ +
Sbjct: 42 VAQAANGQEALDKLAAQPN-VDLILLNIEMPVMDGMEFLRHAKLKTRAKICMLAS----- 95
Query: 65 VVMKGVTHDA 74
V + G H A
Sbjct: 96 VAVSGSPHAA 105
>pdb|3ILH|A Chain A, Crystal Structure Of Two Component Response Regulator From
Cytophaga Hutchinsonii
Length = 146
Score = 26.9 bits (58), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 46/100 (46%), Gaps = 6/100 (6%)
Query: 4 SVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVG-----LEMDLPVIMMC 58
SVT N A L+ L I+ D++MP ++G++L++L ++ V ++
Sbjct: 40 SVTSGNAAINKLNELYAAGRWPSIICIDINMPGINGWELIDLFKQHFQPMKNKSIVCLLS 99
Query: 59 AHGSKEVVMKGVTHDACD-YLTKPVRIEELKNIWQHVVRK 97
+ K D D Y++KP+ L N++ V+ +
Sbjct: 100 SSLDPRDQAKAEASDWVDYYVSKPLTANALNNLYNKVLNE 139
>pdb|3LPF|A Chain A, Structure Of E. Coli Beta-Glucuronidase Bound With A
Novel, Potent Inhibitor
1-((6,7-Dimethyl-2-Oxo-1,
2-Dihydroquinolin-3-Yl)methyl)-1-
(2-Hydroxyethyl)-3-(3-Methoxyphenyl)thiourea
pdb|3LPF|B Chain B, Structure Of E. Coli Beta-Glucuronidase Bound With A
Novel, Potent Inhibitor
1-((6,7-Dimethyl-2-Oxo-1,
2-Dihydroquinolin-3-Yl)methyl)-1-
(2-Hydroxyethyl)-3-(3-Methoxyphenyl)thiourea
pdb|3LPG|A Chain A, Structure Of E. Coli Beta-Glucuronidase Bound With A
Novel, Potent Inhibitor
3-(2-Fluorophenyl)-1-(2-Hydroxyethyl)-1-((6-Methyl-2-
Oxo-1, 2-Dihydroquinolin-3-Yl)methyl)urea
pdb|3LPG|B Chain B, Structure Of E. Coli Beta-Glucuronidase Bound With A
Novel, Potent Inhibitor
3-(2-Fluorophenyl)-1-(2-Hydroxyethyl)-1-((6-Methyl-2-
Oxo-1, 2-Dihydroquinolin-3-Yl)methyl)urea
Length = 605
Score = 26.9 bits (58), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 34/80 (42%), Gaps = 7/80 (8%)
Query: 143 EEAEKRLKKPRLVWSVELHQQFVSAVKELGFDK-AGPKKILELMNIPGLTRENVASHLQK 201
E AEK L+K L W +LHQ + + E G D AG L + E + L
Sbjct: 481 ETAEKVLEKELLAWQEKLHQPII--ITEYGVDTLAG----LHSXYTDXWSEEYQCAWLDX 534
Query: 202 HRLYLSRLSGVSPQQGNSFV 221
+ R+S V +Q +F
Sbjct: 535 YHRVFDRVSAVVGEQVWNFA 554
>pdb|3K4A|A Chain A, Crystal Structure Of Selenomethionine Substituted E. Coli
Beta- Glucuronidase
pdb|3K4A|B Chain B, Crystal Structure Of Selenomethionine Substituted E. Coli
Beta- Glucuronidase
Length = 605
Score = 26.9 bits (58), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 34/80 (42%), Gaps = 7/80 (8%)
Query: 143 EEAEKRLKKPRLVWSVELHQQFVSAVKELGFDK-AGPKKILELMNIPGLTRENVASHLQK 201
E AEK L+K L W +LHQ + + E G D AG L + E + L
Sbjct: 481 ETAEKVLEKELLAWQEKLHQPII--ITEYGVDTLAG----LHSXYTDXWSEEYQCAWLDX 534
Query: 202 HRLYLSRLSGVSPQQGNSFV 221
+ R+S V +Q +F
Sbjct: 535 YHRVFDRVSAVVGEQVWNFA 554
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.132 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,788,369
Number of Sequences: 62578
Number of extensions: 277892
Number of successful extensions: 737
Number of sequences better than 100.0: 163
Number of HSP's better than 100.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 57
Number of HSP's that attempted gapping in prelim test: 547
Number of HSP's gapped (non-prelim): 167
length of query: 226
length of database: 14,973,337
effective HSP length: 95
effective length of query: 131
effective length of database: 9,028,427
effective search space: 1182723937
effective search space used: 1182723937
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 50 (23.9 bits)