Query 027234
Match_columns 226
No_of_seqs 268 out of 1959
Neff 9.2
Searched_HMMs 29240
Date Mon Mar 25 11:07:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027234.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027234hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3to5_A CHEY homolog; alpha(5)b 99.9 1.6E-23 5.3E-28 154.0 11.8 94 1-96 35-132 (134)
2 3rqi_A Response regulator prot 99.9 4.6E-22 1.6E-26 153.4 10.5 98 1-100 30-128 (184)
3 3gl9_A Response regulator; bet 99.8 8.9E-20 3E-24 131.1 13.7 93 1-95 25-120 (122)
4 1irz_A ARR10-B; helix-turn-hel 99.8 7.4E-21 2.5E-25 118.8 6.5 61 149-209 3-63 (64)
5 3f6p_A Transcriptional regulat 99.8 6.3E-20 2.1E-24 131.5 12.2 94 1-96 25-118 (120)
6 3t6k_A Response regulator rece 99.8 2.1E-19 7.2E-24 131.6 13.0 97 1-99 27-126 (136)
7 2lpm_A Two-component response 99.8 1.9E-21 6.5E-26 140.6 1.1 89 1-95 31-120 (123)
8 1s8n_A Putative antiterminator 99.8 5.9E-19 2E-23 138.0 13.8 99 1-101 36-135 (205)
9 3crn_A Response regulator rece 99.8 2.5E-18 8.7E-23 124.9 14.8 100 1-102 26-126 (132)
10 2r25_B Osmosensing histidine p 99.8 6.7E-19 2.3E-23 128.4 11.3 93 2-96 26-126 (133)
11 2pl1_A Transcriptional regulat 99.8 4.7E-18 1.6E-22 121.1 14.4 95 1-97 23-118 (121)
12 1yio_A Response regulatory pro 99.8 2.1E-18 7.1E-23 134.9 13.6 97 1-99 27-124 (208)
13 1a04_A Nitrate/nitrite respons 99.8 2.8E-18 9.5E-23 135.0 13.5 94 2-97 30-125 (215)
14 3sy8_A ROCR; TIM barrel phosph 99.8 9E-21 3.1E-25 163.3 -1.0 166 2-175 28-204 (400)
15 1dbw_A Transcriptional regulat 99.8 3.5E-18 1.2E-22 123.0 12.9 94 1-96 26-120 (126)
16 1zgz_A Torcad operon transcrip 99.8 5.8E-18 2E-22 121.0 13.9 95 1-97 25-119 (122)
17 3cfy_A Putative LUXO repressor 99.8 6.3E-18 2.2E-22 123.8 14.4 98 1-100 27-125 (137)
18 3n0r_A Response regulator; sig 99.8 1.6E-19 5.5E-24 148.9 6.4 95 1-99 183-279 (286)
19 1xhf_A DYE resistance, aerobic 99.8 4.7E-18 1.6E-22 121.6 13.2 95 1-97 26-120 (123)
20 2a9o_A Response regulator; ess 99.8 3.9E-18 1.3E-22 121.3 12.4 94 1-96 24-117 (120)
21 3hv2_A Response regulator/HD d 99.8 7.2E-18 2.4E-22 125.6 14.3 101 1-103 37-139 (153)
22 3gt7_A Sensor protein; structu 99.8 3.9E-18 1.3E-22 127.4 12.8 98 1-100 30-130 (154)
23 2qzj_A Two-component response 99.8 4.7E-18 1.6E-22 124.3 13.0 97 1-99 27-123 (136)
24 3m6m_D Sensory/regulatory prot 99.8 4.4E-18 1.5E-22 125.6 12.4 95 1-97 37-136 (143)
25 1srr_A SPO0F, sporulation resp 99.8 3.3E-18 1.1E-22 122.7 11.2 94 1-96 26-120 (124)
26 3h1g_A Chemotaxis protein CHEY 99.8 7.6E-18 2.6E-22 121.9 13.2 95 1-96 28-126 (129)
27 3jte_A Response regulator rece 99.8 1.8E-17 6.2E-22 121.7 14.4 102 1-102 26-128 (143)
28 3r0j_A Possible two component 99.8 1E-17 3.5E-22 135.0 14.1 97 1-99 46-143 (250)
29 3b2n_A Uncharacterized protein 99.8 1E-17 3.6E-22 121.8 12.7 94 3-98 30-124 (133)
30 1tmy_A CHEY protein, TMY; chem 99.8 8E-18 2.7E-22 119.9 11.7 93 1-95 25-119 (120)
31 3kto_A Response regulator rece 99.8 3.2E-18 1.1E-22 125.1 9.6 98 1-100 29-129 (136)
32 1zh2_A KDP operon transcriptio 99.8 9.7E-18 3.3E-22 119.4 11.7 95 1-97 24-118 (121)
33 3hdg_A Uncharacterized protein 99.8 1.1E-17 3.8E-22 122.0 12.1 100 1-102 30-130 (137)
34 3h5i_A Response regulator/sens 99.8 5.1E-18 1.7E-22 124.6 10.1 100 1-102 28-129 (140)
35 1jbe_A Chemotaxis protein CHEY 99.7 3.1E-17 1.1E-21 118.1 13.9 95 1-97 27-125 (128)
36 3luf_A Two-component system re 99.7 9.1E-18 3.1E-22 136.4 12.3 99 1-100 147-248 (259)
37 3grc_A Sensor protein, kinase; 99.7 9.5E-18 3.2E-22 122.8 11.2 100 1-102 29-132 (140)
38 3lua_A Response regulator rece 99.7 2.7E-18 9.2E-23 125.9 8.1 98 1-100 28-130 (140)
39 3eod_A Protein HNR; response r 99.7 8.8E-18 3E-22 121.4 10.5 96 1-98 30-127 (130)
40 3nhm_A Response regulator; pro 99.7 2.1E-17 7.3E-22 119.8 12.5 97 1-100 26-125 (133)
41 3c3w_A Two component transcrip 99.7 3.7E-18 1.3E-22 135.6 8.8 95 3-99 27-123 (225)
42 3klo_A Transcriptional regulat 99.7 2.1E-18 7.3E-23 136.8 7.3 95 2-98 32-130 (225)
43 1p6q_A CHEY2; chemotaxis, sign 99.7 1.7E-17 5.8E-22 119.7 11.4 94 1-96 29-126 (129)
44 1i3c_A Response regulator RCP1 99.7 4.4E-17 1.5E-21 120.8 13.9 94 4-97 36-137 (149)
45 2zay_A Response regulator rece 99.7 3.4E-17 1.2E-21 120.8 13.1 97 2-100 32-131 (147)
46 4e7p_A Response regulator; DNA 99.7 2.7E-17 9.2E-22 122.0 12.3 96 3-100 47-143 (150)
47 1mb3_A Cell division response 99.7 1.7E-17 6E-22 118.7 10.9 94 1-96 24-120 (124)
48 3cu5_A Two component transcrip 99.7 8.7E-18 3E-22 123.6 9.4 96 2-99 28-125 (141)
49 1dz3_A Stage 0 sporulation pro 99.7 1.5E-17 5E-22 120.4 10.4 94 2-97 27-123 (130)
50 3dzd_A Transcriptional regulat 99.7 6E-18 2E-22 144.1 9.6 97 1-99 23-120 (368)
51 1mvo_A PHOP response regulator 99.7 2.1E-17 7E-22 120.3 11.1 96 1-98 26-122 (136)
52 2ayx_A Sensor kinase protein R 99.7 1.7E-17 5.7E-22 134.4 11.5 98 1-100 152-250 (254)
53 3kht_A Response regulator; PSI 99.7 4.7E-17 1.6E-21 119.7 13.0 97 2-100 29-131 (144)
54 3kcn_A Adenylate cyclase homol 99.7 6.1E-17 2.1E-21 120.2 13.7 101 2-103 27-129 (151)
55 3hdv_A Response regulator; PSI 99.7 5.6E-17 1.9E-21 118.1 13.1 98 1-99 30-129 (136)
56 3mm4_A Histidine kinase homolo 99.7 1.7E-17 5.8E-22 130.2 10.8 98 1-100 84-199 (206)
57 3q9s_A DNA-binding response re 99.7 1.7E-17 5.7E-22 134.0 10.8 96 1-98 60-155 (249)
58 2rjn_A Response regulator rece 99.7 8.2E-17 2.8E-21 119.9 13.8 100 1-102 30-131 (154)
59 3snk_A Response regulator CHEY 99.7 1.7E-18 5.8E-23 126.2 4.5 95 1-97 37-133 (135)
60 3ilh_A Two component response 99.7 5.1E-17 1.7E-21 119.4 12.4 95 2-98 33-140 (146)
61 3i42_A Response regulator rece 99.7 1.3E-17 4.4E-22 120.1 9.0 94 1-97 26-122 (127)
62 3cnb_A DNA-binding response re 99.7 7.4E-17 2.5E-21 118.1 13.2 97 1-99 32-132 (143)
63 3f6c_A Positive transcription 99.7 7.1E-18 2.4E-22 122.5 7.7 97 1-99 24-122 (134)
64 1k68_A Phytochrome response re 99.7 8.3E-17 2.9E-21 117.1 13.4 96 2-99 26-133 (140)
65 3heb_A Response regulator rece 99.7 9.5E-17 3.3E-21 119.2 13.7 97 2-98 28-136 (152)
66 2jba_A Phosphate regulon trans 99.7 1.2E-17 4E-22 120.1 8.1 95 1-97 25-122 (127)
67 3n53_A Response regulator rece 99.7 2.1E-17 7.3E-22 121.0 9.5 99 3-103 27-128 (140)
68 3hzh_A Chemotaxis response reg 99.7 6.5E-17 2.2E-21 121.0 12.1 95 1-95 59-155 (157)
69 1k66_A Phytochrome response re 99.7 1.3E-16 4.3E-21 117.5 13.5 95 2-98 30-139 (149)
70 1ny5_A Transcriptional regulat 99.7 7.8E-17 2.7E-21 138.2 14.0 96 2-99 24-120 (387)
71 3cg0_A Response regulator rece 99.7 1.1E-16 3.8E-21 116.8 12.9 98 2-101 33-132 (140)
72 4dad_A Putative pilus assembly 99.7 2.4E-17 8.2E-22 121.6 9.4 95 2-98 44-142 (146)
73 1kgs_A DRRD, DNA binding respo 99.7 8.9E-17 3E-21 127.0 13.1 96 1-98 25-121 (225)
74 3c3m_A Response regulator rece 99.7 5.3E-17 1.8E-21 118.8 10.9 95 1-97 26-123 (138)
75 2jk1_A HUPR, hydrogenase trans 99.7 1.4E-16 4.8E-21 116.6 13.0 95 3-99 25-121 (139)
76 2qxy_A Response regulator; reg 99.7 7.4E-17 2.5E-21 118.3 11.4 99 1-102 27-126 (142)
77 1qkk_A DCTD, C4-dicarboxylate 99.7 1.2E-16 4E-21 119.1 12.3 98 1-100 26-124 (155)
78 3eul_A Possible nitrate/nitrit 99.7 1.6E-16 5.5E-21 118.0 12.9 95 5-101 44-139 (152)
79 3eq2_A Probable two-component 99.7 4.9E-17 1.7E-21 139.5 11.1 95 1-97 28-124 (394)
80 3bre_A Probable two-component 99.7 2E-16 6.9E-21 133.6 14.6 92 2-95 43-137 (358)
81 3a10_A Response regulator; pho 99.7 6.5E-17 2.2E-21 114.4 9.5 91 1-95 24-115 (116)
82 1w25_A Stalked-cell differenti 99.7 1.7E-16 6E-21 138.5 14.1 98 1-100 24-124 (459)
83 2qr3_A Two-component system re 99.7 1.7E-16 5.7E-21 115.9 11.7 97 1-99 26-128 (140)
84 3cg4_A Response regulator rece 99.7 5.4E-17 1.8E-21 118.9 8.9 98 1-100 30-130 (142)
85 3lte_A Response regulator; str 99.7 1.9E-16 6.6E-21 114.5 11.6 96 1-99 29-127 (132)
86 3cz5_A Two-component response 99.7 1.4E-16 4.9E-21 118.4 11.0 97 2-100 30-128 (153)
87 1ys7_A Transcriptional regulat 99.7 1.2E-16 4E-21 127.0 10.6 97 1-99 30-127 (233)
88 2oqr_A Sensory transduction pr 99.7 1.2E-16 4.1E-21 126.8 9.5 96 1-98 27-122 (230)
89 2qvg_A Two component response 99.7 1.1E-15 3.6E-20 112.1 13.5 92 2-95 31-133 (143)
90 2gkg_A Response regulator homo 99.7 6.9E-16 2.4E-20 110.3 11.0 92 2-96 29-124 (127)
91 2gwr_A DNA-binding response re 99.7 2.8E-16 9.7E-21 125.5 9.8 95 1-97 28-122 (238)
92 1dcf_A ETR1 protein; beta-alph 99.7 7.5E-16 2.6E-20 112.1 10.9 93 1-96 30-128 (136)
93 2qv0_A Protein MRKE; structura 99.7 2.5E-15 8.4E-20 110.2 13.7 95 2-100 34-130 (143)
94 2qsj_A DNA-binding response re 99.7 2.5E-16 8.4E-21 117.1 8.2 97 2-100 28-127 (154)
95 3kyj_B CHEY6 protein, putative 99.6 3.7E-16 1.3E-20 115.1 7.6 90 2-93 38-131 (145)
96 2rdm_A Response regulator rece 99.6 2.2E-15 7.5E-20 108.8 11.6 95 1-99 28-125 (132)
97 3c97_A Signal transduction his 99.6 5.7E-16 2E-20 113.4 8.2 94 1-99 33-132 (140)
98 1p2f_A Response regulator; DRR 99.6 2.2E-15 7.4E-20 118.8 11.3 91 4-98 27-118 (220)
99 1dc7_A NTRC, nitrogen regulati 99.6 1.7E-17 5.8E-22 118.5 -1.2 95 1-97 26-121 (124)
100 3eqz_A Response regulator; str 99.6 4.4E-16 1.5E-20 112.8 6.3 94 2-98 27-126 (135)
101 2pln_A HP1043, response regula 99.6 5E-15 1.7E-19 107.8 11.3 91 1-97 41-133 (137)
102 3t8y_A CHEB, chemotaxis respon 99.6 3E-15 1E-19 112.9 9.9 90 5-96 54-154 (164)
103 1qo0_D AMIR; binding protein, 99.6 1.1E-15 3.7E-20 118.4 7.6 92 2-100 36-128 (196)
104 2j48_A Two-component sensor ki 99.6 2.7E-15 9.2E-20 105.7 7.5 90 1-95 24-116 (119)
105 2hqr_A Putative transcriptiona 99.6 9.4E-15 3.2E-19 115.3 9.2 90 2-97 24-115 (223)
106 2b4a_A BH3024; flavodoxin-like 99.6 3.2E-15 1.1E-19 109.0 5.4 90 1-96 38-130 (138)
107 1a2o_A CHEB methylesterase; ba 99.5 5.5E-14 1.9E-18 118.8 11.3 94 2-97 28-133 (349)
108 3luf_A Two-component system re 99.5 5.7E-14 2E-18 113.9 6.5 80 2-85 29-108 (259)
109 2vyc_A Biodegradative arginine 99.4 8.8E-14 3E-18 128.4 6.8 97 1-98 31-134 (755)
110 3cwo_X Beta/alpha-barrel prote 99.4 5.5E-13 1.9E-17 105.7 5.8 92 3-96 6-100 (237)
111 1w25_A Stalked-cell differenti 99.0 1.3E-08 4.5E-13 88.5 14.6 96 3-101 176-274 (459)
112 3n75_A LDC, lysine decarboxyla 97.5 0.00015 5E-09 66.4 6.3 93 1-97 29-123 (715)
113 3cwo_X Beta/alpha-barrel prote 97.2 0.0022 7.5E-08 49.8 9.6 82 10-92 131-221 (237)
114 3lsg_A Two-component response 96.2 0.0029 9.8E-08 43.0 2.7 40 180-219 10-50 (103)
115 2k9s_A Arabinose operon regula 95.5 0.0063 2.2E-07 41.6 2.2 41 180-220 11-52 (107)
116 3mkl_A HTH-type transcriptiona 95.4 0.0012 4.2E-08 46.3 -1.8 40 180-220 15-54 (120)
117 3oou_A LIN2118 protein; protei 95.2 0.006 2.1E-07 41.8 1.4 39 180-219 13-52 (108)
118 3mn2_A Probable ARAC family tr 95.2 0.011 3.9E-07 40.4 2.7 40 180-220 10-50 (108)
119 3oio_A Transcriptional regulat 95.0 0.0081 2.8E-07 41.5 1.6 40 180-220 15-55 (113)
120 1wv2_A Thiazole moeity, thiazo 94.8 0.37 1.3E-05 38.3 10.7 91 2-96 135-237 (265)
121 1bl0_A Protein (multiple antib 94.8 0.0094 3.2E-07 42.3 1.4 49 161-219 9-58 (129)
122 2yxb_A Coenzyme B12-dependent 94.4 0.98 3.4E-05 33.1 11.7 95 2-99 46-147 (161)
123 3q7r_A Transcriptional regulat 93.7 0.29 9.9E-06 32.9 6.7 64 25-97 51-118 (121)
124 3q58_A N-acetylmannosamine-6-p 93.5 0.46 1.6E-05 37.1 8.9 71 6-80 134-210 (229)
125 3gbg_A TCP pilus virulence reg 93.4 0.02 6.8E-07 45.8 0.9 40 180-220 177-216 (276)
126 2htm_A Thiazole biosynthesis p 92.7 0.41 1.4E-05 38.1 7.4 91 2-96 124-228 (268)
127 1u8b_A ADA polyprotein; protei 92.5 0.046 1.6E-06 38.8 1.6 34 187-220 91-125 (133)
128 3igs_A N-acetylmannosamine-6-p 92.1 0.85 2.9E-05 35.6 8.6 70 6-79 134-209 (232)
129 1tc3_C Protein (TC3 transposas 92.1 0.068 2.3E-06 30.3 1.8 34 181-215 14-47 (51)
130 2w7n_A TRFB transcriptional re 90.2 0.13 4.4E-06 34.9 1.9 46 162-208 8-53 (101)
131 2zcm_A Biofilm operon icaabcd 89.8 0.3 1E-05 36.0 3.9 44 159-212 7-50 (192)
132 1jko_C HIN recombinase, DNA-in 89.6 0.16 5.5E-06 28.9 1.8 32 181-213 14-45 (52)
133 3knw_A Putative transcriptiona 88.1 0.47 1.6E-05 35.3 3.9 44 159-212 14-57 (212)
134 3qkx_A Uncharacterized HTH-typ 88.0 0.49 1.7E-05 34.4 3.9 43 160-212 9-51 (188)
135 3ppb_A Putative TETR family tr 87.9 0.51 1.7E-05 34.4 4.0 42 161-212 11-52 (195)
136 3rd3_A Probable transcriptiona 87.8 0.61 2.1E-05 34.1 4.4 44 159-212 10-53 (197)
137 3kkc_A TETR family transcripti 87.8 0.43 1.5E-05 34.5 3.5 43 160-212 13-55 (177)
138 3o63_A Probable thiamine-phosp 87.5 6.7 0.00023 30.7 10.4 83 7-93 141-237 (243)
139 1geq_A Tryptophan synthase alp 87.5 1.9 6.4E-05 33.6 7.3 50 40-89 69-124 (248)
140 1xi3_A Thiamine phosphate pyro 87.3 5.7 0.00019 29.8 9.8 68 7-78 114-188 (215)
141 3qbm_A TETR transcriptional re 87.2 0.67 2.3E-05 34.0 4.3 43 160-212 8-50 (199)
142 2iu5_A DHAS, YCEG, HTH-type dh 87.1 0.56 1.9E-05 34.6 3.9 43 160-212 14-56 (195)
143 3b81_A Transcriptional regulat 86.8 0.72 2.5E-05 34.0 4.3 44 159-212 11-54 (203)
144 2ekc_A AQ_1548, tryptophan syn 86.7 3 0.0001 33.0 8.1 56 39-94 81-143 (262)
145 3vp5_A Transcriptional regulat 86.7 0.64 2.2E-05 34.3 3.9 43 160-212 13-55 (189)
146 3lwj_A Putative TETR-family tr 86.6 0.61 2.1E-05 34.4 3.8 44 159-212 12-55 (202)
147 1yad_A Regulatory protein TENI 86.6 2.9 9.8E-05 31.9 7.8 69 7-79 116-191 (221)
148 3him_A Probable transcriptiona 86.5 0.64 2.2E-05 34.4 3.9 43 160-212 17-59 (211)
149 3e7l_A Transcriptional regulat 86.5 0.44 1.5E-05 29.0 2.4 30 180-209 23-52 (63)
150 3he0_A Transcriptional regulat 86.5 0.8 2.7E-05 33.5 4.4 42 161-212 13-54 (196)
151 3dcf_A Transcriptional regulat 86.4 0.68 2.3E-05 34.5 4.0 44 159-212 31-74 (218)
152 3kz9_A SMCR; transcriptional r 86.2 0.71 2.4E-05 34.0 4.0 43 160-212 18-60 (206)
153 3col_A Putative transcription 85.8 0.61 2.1E-05 34.0 3.4 43 160-212 11-53 (196)
154 2fq4_A Transcriptional regulat 85.8 0.76 2.6E-05 33.8 4.0 44 159-212 12-55 (192)
155 3lhq_A Acrab operon repressor 85.8 0.74 2.5E-05 34.2 3.9 43 160-212 15-57 (220)
156 3on4_A Transcriptional regulat 85.7 0.53 1.8E-05 34.3 3.0 43 160-212 11-53 (191)
157 3vnd_A TSA, tryptophan synthas 85.7 1.6 5.6E-05 34.8 6.0 78 14-93 37-143 (267)
158 1sgm_A Putative HTH-type trans 85.6 0.72 2.5E-05 33.5 3.7 42 161-212 8-49 (191)
159 3f1b_A TETR-like transcription 85.6 0.76 2.6E-05 33.8 3.9 42 161-212 16-57 (203)
160 2fd5_A Transcriptional regulat 85.4 1.1 3.8E-05 32.4 4.6 42 161-212 9-50 (180)
161 1neq_A DNA-binding protein NER 85.3 0.51 1.8E-05 29.8 2.4 32 180-211 13-44 (74)
162 1ka9_F Imidazole glycerol phos 85.3 7.6 0.00026 30.0 9.8 78 12-91 155-242 (252)
163 2x48_A CAG38821; archeal virus 85.2 0.38 1.3E-05 28.1 1.6 23 188-210 30-52 (55)
164 3qqa_A CMER; alpha-helical, he 85.2 0.87 3E-05 33.9 4.1 44 159-212 19-62 (216)
165 1pb6_A Hypothetical transcript 85.1 0.8 2.7E-05 34.0 3.8 44 159-212 18-61 (212)
166 2w6r_A Imidazole glycerol phos 85.1 5.4 0.00018 31.2 8.9 68 11-80 158-229 (266)
167 3nrg_A TETR family transcripti 85.1 0.74 2.5E-05 34.3 3.6 44 159-212 13-56 (217)
168 3o07_A Pyridoxine biosynthesis 85.1 7.7 0.00026 31.1 9.5 96 5-103 119-257 (291)
169 2g7s_A Transcriptional regulat 84.9 0.57 1.9E-05 34.1 2.9 43 160-212 9-51 (194)
170 2v57_A TETR family transcripti 84.9 0.59 2E-05 34.2 2.9 42 159-212 14-55 (190)
171 4fe7_A Xylose operon regulator 84.8 0.37 1.3E-05 40.6 2.0 37 180-217 313-350 (412)
172 1zk8_A Transcriptional regulat 84.7 0.76 2.6E-05 33.4 3.5 42 161-212 10-51 (183)
173 2qko_A Possible transcriptiona 84.6 0.78 2.7E-05 34.4 3.6 44 159-212 28-71 (215)
174 3dew_A Transcriptional regulat 84.6 0.63 2.1E-05 34.2 3.0 43 160-212 9-51 (206)
175 3vpr_A Transcriptional regulat 84.6 0.82 2.8E-05 33.5 3.6 42 161-212 5-46 (190)
176 2ras_A Transcriptional regulat 84.5 1.1 3.7E-05 33.4 4.4 43 160-212 12-54 (212)
177 2rae_A Transcriptional regulat 84.5 0.9 3.1E-05 33.6 3.9 44 160-213 18-61 (207)
178 3cwr_A Transcriptional regulat 84.3 0.66 2.3E-05 34.2 3.0 44 159-212 17-60 (208)
179 3bru_A Regulatory protein, TET 84.3 0.94 3.2E-05 33.9 3.9 44 159-212 30-73 (222)
180 2hxo_A Putative TETR-family tr 84.3 1.4 4.7E-05 34.1 5.0 42 161-212 18-59 (237)
181 3egq_A TETR family transcripti 84.2 0.59 2E-05 33.5 2.7 42 161-212 6-47 (170)
182 4hku_A LMO2814 protein, TETR t 84.2 0.92 3.1E-05 33.1 3.7 42 161-212 9-50 (178)
183 2qtq_A Transcriptional regulat 84.2 0.79 2.7E-05 34.0 3.4 44 159-212 16-59 (213)
184 3ccy_A Putative TETR-family tr 84.1 1.3 4.5E-05 32.7 4.6 43 160-212 15-57 (203)
185 2dg7_A Putative transcriptiona 84.0 0.65 2.2E-05 34.2 2.8 45 160-214 8-52 (195)
186 1qop_A Tryptophan synthase alp 83.8 2.8 9.6E-05 33.3 6.7 72 23-94 43-143 (268)
187 3on2_A Probable transcriptiona 83.8 0.73 2.5E-05 33.7 3.1 43 160-212 13-55 (199)
188 3aqt_A Bacterial regulatory pr 83.7 0.93 3.2E-05 35.0 3.7 44 159-212 46-89 (245)
189 4adt_A Pyridoxine biosynthetic 83.7 16 0.00054 29.5 11.7 89 5-96 129-259 (297)
190 3t76_A VANU, transcriptional r 83.6 0.34 1.2E-05 31.8 1.0 32 180-211 28-59 (88)
191 3bni_A Putative TETR-family tr 83.6 1 3.6E-05 34.2 4.0 44 159-212 43-86 (229)
192 3gzi_A Transcriptional regulat 83.5 0.87 3E-05 34.0 3.4 43 160-212 18-60 (218)
193 2yve_A Transcriptional regulat 83.4 1 3.5E-05 33.0 3.7 42 161-212 6-47 (185)
194 1ccw_A Protein (glutamate muta 83.3 9.7 0.00033 26.7 11.7 90 2-94 31-133 (137)
195 2oi8_A Putative regulatory pro 83.2 1.4 4.7E-05 33.4 4.5 44 159-212 16-59 (216)
196 3anp_C Transcriptional repress 83.2 1.2 4E-05 33.1 4.0 43 160-212 10-52 (204)
197 3dpj_A Transcription regulator 83.1 1.2 4E-05 32.6 4.0 43 160-212 9-51 (194)
198 3s5r_A Transcriptional regulat 83.0 1 3.4E-05 33.5 3.6 43 160-212 11-53 (216)
199 3fiw_A Putative TETR-family tr 83.0 0.92 3.1E-05 34.4 3.4 42 161-212 27-68 (211)
200 3g7r_A Putative transcriptiona 82.9 1.2 4E-05 33.7 4.0 44 159-212 35-78 (221)
201 3f0c_A TETR-molecule A, transc 82.8 1.2 4E-05 33.2 3.9 43 160-212 12-54 (216)
202 1umq_A Photosynthetic apparatu 82.7 0.41 1.4E-05 31.0 1.0 29 181-209 46-74 (81)
203 3rh2_A Hypothetical TETR-like 82.7 0.84 2.9E-05 34.1 3.0 42 161-212 5-46 (212)
204 1thf_D HISF protein; thermophI 82.7 15 0.0005 28.4 10.8 78 11-90 153-240 (253)
205 1rkt_A Protein YFIR; transcrip 82.6 1.5 5.1E-05 32.5 4.4 42 161-212 14-55 (205)
206 2d6y_A Putative TETR family re 82.5 1.1 3.7E-05 33.4 3.6 42 161-212 10-51 (202)
207 2a6c_A Helix-turn-helix motif; 82.4 0.57 2E-05 29.9 1.7 32 180-211 22-53 (83)
208 2dg8_A Putative TETR-family tr 82.4 0.88 3E-05 33.5 3.0 43 160-212 10-52 (193)
209 1r69_A Repressor protein CI; g 82.2 0.43 1.5E-05 28.9 1.0 31 181-211 6-36 (69)
210 2xdn_A HTH-type transcriptiona 82.1 1.3 4.3E-05 33.0 3.8 43 160-212 12-54 (210)
211 2w53_A Repressor, SMet; antibi 82.1 1.5 5.3E-05 32.8 4.4 42 161-212 13-54 (219)
212 2qwt_A Transcriptional regulat 82.1 1.3 4.3E-05 32.8 3.8 41 161-212 15-55 (196)
213 3qq6_A HTH-type transcriptiona 82.1 0.42 1.4E-05 30.3 0.9 32 180-211 14-45 (78)
214 3geu_A Intercellular adhesion 82.0 0.58 2E-05 34.2 1.9 42 161-212 5-46 (189)
215 2zb9_A Putative transcriptiona 81.9 0.87 3E-05 34.0 2.9 44 159-212 23-66 (214)
216 2hku_A A putative transcriptio 81.8 1.2 4E-05 33.4 3.5 43 159-212 20-62 (215)
217 2g7l_A TETR-family transcripti 81.7 1.5 5.1E-05 34.1 4.2 42 161-212 21-62 (243)
218 3kts_A Glycerol uptake operon 81.7 2.7 9.1E-05 31.8 5.4 62 12-79 117-178 (192)
219 2kpj_A SOS-response transcript 81.6 0.84 2.9E-05 29.8 2.4 32 180-211 13-44 (94)
220 3kp1_A D-ornithine aminomutase 81.6 13 0.00044 33.5 10.3 91 2-97 634-735 (763)
221 2f07_A YVDT; helix-turn-helix, 81.6 1.5 5E-05 32.4 4.0 43 161-213 12-54 (197)
222 2of7_A Putative TETR-family tr 81.6 1.4 4.7E-05 34.4 4.0 44 159-212 48-91 (260)
223 1zug_A Phage 434 CRO protein; 81.5 0.47 1.6E-05 28.9 1.0 32 180-211 7-38 (71)
224 1ntc_A Protein (nitrogen regul 81.5 0.33 1.1E-05 32.0 0.3 30 180-209 55-84 (91)
225 2gjl_A Hypothetical protein PA 81.5 12 0.00042 30.3 9.9 70 7-79 124-200 (328)
226 3lsj_A DEST; transcriptional r 81.5 0.93 3.2E-05 34.0 2.9 43 160-212 12-55 (220)
227 3nnr_A Transcriptional regulat 81.5 0.98 3.4E-05 34.2 3.0 42 161-212 7-48 (228)
228 2ibd_A Possible transcriptiona 81.4 1.4 4.8E-05 32.7 3.9 44 159-212 14-57 (204)
229 1z0x_A Transcriptional regulat 81.4 1.2 3.9E-05 34.0 3.4 42 161-212 7-49 (220)
230 2qib_A TETR-family transcripti 81.3 0.99 3.4E-05 34.4 3.0 43 160-212 14-56 (231)
231 2o7t_A Transcriptional regulat 81.3 1 3.5E-05 33.3 3.0 42 161-212 10-51 (199)
232 3nxc_A HTH-type protein SLMA; 81.2 1.1 3.9E-05 33.1 3.3 43 161-212 26-68 (212)
233 3crj_A Transcription regulator 81.1 1.8 6.1E-05 32.0 4.4 43 160-212 15-57 (199)
234 3mvp_A TETR/ACRR transcription 81.0 1.1 3.6E-05 33.4 3.1 44 159-212 26-69 (217)
235 3b7h_A Prophage LP1 protein 11 80.8 0.51 1.7E-05 29.4 1.0 31 181-211 12-42 (78)
236 1qo2_A Molecule: N-((5-phospho 80.8 9.9 0.00034 29.3 8.7 78 10-90 145-239 (241)
237 2y2z_A SIM16, SIMR, putative r 80.8 1.8 6E-05 34.3 4.4 42 161-212 29-70 (267)
238 2ao9_A Phage protein; structur 80.7 1.5 5.1E-05 32.0 3.6 21 188-208 47-67 (155)
239 1ui5_A A-factor receptor homol 80.5 1.6 5.5E-05 32.8 4.0 43 160-212 10-52 (215)
240 3hta_A EBRA repressor; TETR fa 80.5 1.1 3.8E-05 33.8 3.0 43 160-212 29-71 (217)
241 2xij_A Methylmalonyl-COA mutas 80.4 10 0.00035 34.8 9.6 96 1-99 631-733 (762)
242 3trb_A Virulence-associated pr 80.3 0.94 3.2E-05 30.6 2.3 27 184-210 22-48 (104)
243 2xi8_A Putative transcription 80.3 0.38 1.3E-05 28.8 0.2 31 181-211 6-36 (66)
244 3s8q_A R-M controller protein; 80.3 0.54 1.8E-05 29.8 1.0 30 181-210 16-45 (82)
245 1xm3_A Thiazole biosynthesis p 80.2 3.5 0.00012 32.7 6.0 76 2-80 126-207 (264)
246 3cdl_A Transcriptional regulat 80.2 1.9 6.5E-05 31.9 4.2 43 160-212 10-52 (203)
247 2iai_A Putative transcriptiona 80.2 1.7 5.9E-05 32.9 4.1 41 162-212 33-73 (230)
248 3pas_A TETR family transcripti 80.1 0.56 1.9E-05 34.2 1.2 43 160-212 9-51 (195)
249 1y0e_A Putative N-acetylmannos 80.0 8 0.00027 29.3 7.9 71 7-80 125-204 (223)
250 1y7y_A C.AHDI; helix-turn-heli 80.0 0.56 1.9E-05 28.8 1.0 31 181-211 18-48 (74)
251 2b5a_A C.BCLI; helix-turn-heli 80.0 0.56 1.9E-05 29.1 1.0 31 181-211 15-45 (77)
252 2q24_A Putative TETR family tr 79.9 1.6 5.5E-05 32.0 3.7 41 161-212 17-57 (194)
253 2rek_A Putative TETR-family tr 79.9 1.1 3.9E-05 32.9 2.9 42 160-212 17-58 (199)
254 3cjd_A Transcriptional regulat 79.8 1.2 4.3E-05 33.0 3.1 44 159-212 12-55 (198)
255 2auw_A Hypothetical protein NE 79.8 1.4 4.7E-05 32.7 3.2 41 167-209 83-123 (170)
256 3o60_A LIN0861 protein; PSI, M 79.7 1.6 5.3E-05 32.3 3.5 42 161-212 21-63 (185)
257 1vi0_A Transcriptional regulat 79.7 1.3 4.3E-05 33.1 3.1 42 161-212 10-51 (206)
258 2wui_A MEXZ, transcriptional r 79.6 1.8 6.2E-05 32.2 4.0 43 160-212 12-54 (210)
259 3vib_A MTRR; helix-turn-helix 79.5 1.9 6.4E-05 32.1 4.0 42 161-212 12-53 (210)
260 3jsj_A Putative TETR-family tr 79.5 1.8 6.3E-05 31.4 3.9 42 160-212 10-51 (190)
261 2zcx_A SCO7815, TETR-family tr 79.5 1.8 6.1E-05 33.1 4.0 44 159-212 23-66 (231)
262 3qz6_A HPCH/HPAI aldolase; str 79.5 12 0.00042 29.5 8.9 82 11-94 26-110 (261)
263 3bhq_A Transcriptional regulat 79.5 1.6 5.6E-05 32.5 3.7 43 160-212 13-55 (211)
264 1sfx_A Conserved hypothetical 79.3 0.76 2.6E-05 30.4 1.5 47 163-209 8-54 (109)
265 2r1j_L Repressor protein C2; p 79.2 0.45 1.5E-05 28.7 0.3 31 181-211 10-40 (68)
266 3bjb_A Probable transcriptiona 79.2 1.3 4.4E-05 33.1 3.0 43 160-212 23-65 (207)
267 2k9q_A Uncharacterized protein 79.1 0.45 1.5E-05 29.8 0.3 30 181-210 7-36 (77)
268 1g2h_A Transcriptional regulat 79.0 0.54 1.9E-05 28.4 0.6 20 190-209 34-53 (61)
269 1req_A Methylmalonyl-COA mutas 79.0 12 0.00042 34.1 9.7 92 2-96 624-722 (727)
270 3eup_A Transcriptional regulat 79.0 0.74 2.5E-05 33.9 1.6 43 160-212 12-54 (204)
271 3omt_A Uncharacterized protein 79.0 0.3 1E-05 30.3 -0.6 32 180-211 12-43 (73)
272 2ayx_A Sensor kinase protein R 78.8 1.6 5.3E-05 34.1 3.5 71 1-95 34-104 (254)
273 3q0w_A HTH-type transcriptiona 78.8 1.3 4.6E-05 33.7 3.0 44 159-212 44-87 (236)
274 1h5y_A HISF; histidine biosynt 78.8 13 0.00046 28.3 8.9 80 10-91 155-244 (253)
275 2hyt_A TETR-family transcripti 78.7 1.7 5.9E-05 32.0 3.5 43 160-212 13-55 (197)
276 1ka9_F Imidazole glycerol phos 78.6 12 0.00043 28.8 8.7 69 10-80 32-104 (252)
277 1jhg_A Trp operon repressor; c 78.6 0.55 1.9E-05 31.7 0.6 26 185-210 54-79 (101)
278 2gen_A Probable transcriptiona 78.5 2 6.8E-05 31.7 3.8 42 161-212 9-50 (197)
279 1z4h_A TORI, TOR inhibition pr 78.5 0.52 1.8E-05 28.9 0.4 26 185-210 6-31 (66)
280 2i2x_B MTAC, methyltransferase 78.4 19 0.00064 28.3 9.7 86 2-95 151-242 (258)
281 3fmy_A HTH-type transcriptiona 78.3 0.62 2.1E-05 29.0 0.8 33 177-209 12-44 (73)
282 3bo9_A Putative nitroalkan dio 78.1 11 0.00037 30.8 8.5 70 7-79 130-204 (326)
283 3e7q_A Transcriptional regulat 78.1 0.69 2.4E-05 34.3 1.1 43 160-212 15-57 (215)
284 4aci_A HTH-type transcriptiona 78.1 0.61 2.1E-05 34.1 0.8 43 160-212 15-57 (191)
285 2nx4_A Transcriptional regulat 78.0 2.2 7.6E-05 31.3 4.0 42 161-212 12-53 (194)
286 2g7g_A RHA04620, putative tran 77.9 2.1 7.1E-05 32.4 3.8 40 161-212 13-52 (213)
287 3c2b_A Transcriptional regulat 77.9 1.3 4.5E-05 33.1 2.7 42 161-212 17-58 (221)
288 2id3_A Putative transcriptiona 77.7 1.4 4.7E-05 33.4 2.8 44 159-212 40-83 (225)
289 1adr_A P22 C2 repressor; trans 77.4 0.54 1.9E-05 29.0 0.3 31 181-211 10-40 (76)
290 2np5_A Transcriptional regulat 77.3 1.6 5.5E-05 32.4 3.0 42 161-212 11-52 (203)
291 2opt_A Actii protein; helical 77.2 1.4 4.9E-05 34.1 2.8 42 161-212 8-49 (234)
292 3mnl_A KSTR, transcriptional r 77.2 0.76 2.6E-05 33.8 1.1 43 160-212 21-63 (203)
293 3c07_A Putative TETR-family tr 77.0 2.3 7.9E-05 33.5 4.0 44 159-212 41-84 (273)
294 3bs3_A Putative DNA-binding pr 76.9 0.57 1.9E-05 29.0 0.3 32 180-211 14-45 (76)
295 2hxi_A Putative transcriptiona 76.9 1.7 5.8E-05 33.7 3.1 42 161-212 31-72 (241)
296 2wiu_B HTH-type transcriptiona 76.8 0.79 2.7E-05 29.3 1.0 30 181-210 17-46 (88)
297 2guh_A Putative TETR-family tr 76.7 1.5 5.1E-05 33.1 2.7 44 159-212 39-82 (214)
298 1xrs_B D-lysine 5,6-aminomutas 76.7 26 0.00089 27.7 11.4 90 2-96 157-257 (262)
299 3ljl_A Transcriptional regulat 76.7 0.83 2.8E-05 32.6 1.2 43 160-212 15-57 (156)
300 3v6g_A Probable transcriptiona 76.7 2.6 8.7E-05 31.6 4.0 42 161-212 16-57 (208)
301 1h5y_A HISF; histidine biosynt 76.6 14 0.00047 28.2 8.4 68 10-79 34-105 (253)
302 2y88_A Phosphoribosyl isomeras 76.5 11 0.00039 28.9 7.9 77 11-89 151-240 (244)
303 1y6u_A XIS, excisionase from t 76.5 0.51 1.8E-05 29.6 -0.0 26 187-212 14-39 (70)
304 3g1o_A Transcriptional regulat 76.4 1.5 5E-05 33.9 2.6 44 159-212 43-86 (255)
305 2jj7_A Hemolysin II regulatory 76.4 0.74 2.5E-05 33.5 0.8 42 161-212 9-50 (186)
306 3g5g_A Regulatory protein; tra 76.3 0.98 3.3E-05 30.1 1.4 31 180-210 32-62 (99)
307 3nav_A Tryptophan synthase alp 76.1 2.9 0.0001 33.4 4.3 52 39-90 84-142 (271)
308 2v5j_A 2,4-dihydroxyhept-2-ENE 76.1 28 0.00096 27.8 11.4 82 10-93 48-132 (287)
309 4ghj_A Probable transcriptiona 76.0 0.86 2.9E-05 30.7 1.0 30 180-209 40-69 (101)
310 2i10_A Putative TETR transcrip 75.9 2.4 8.2E-05 31.4 3.7 42 161-212 13-54 (202)
311 3bw2_A 2-nitropropane dioxygen 75.8 20 0.00068 29.7 9.6 70 7-79 151-236 (369)
312 2oer_A Probable transcriptiona 75.6 1.8 6E-05 32.5 2.9 44 159-212 24-67 (214)
313 2tps_A Protein (thiamin phosph 75.5 24 0.0008 26.6 9.5 68 8-79 123-199 (227)
314 3tdn_A FLR symmetric alpha-bet 75.5 12 0.00039 29.0 7.7 68 10-79 36-107 (247)
315 2w6r_A Imidazole glycerol phos 75.5 14 0.00049 28.7 8.3 69 10-80 31-103 (266)
316 3frq_A Repressor protein MPHR( 75.4 0.82 2.8E-05 33.6 0.9 42 161-212 10-51 (195)
317 1x57_A Endothelial differentia 75.2 1.3 4.4E-05 28.6 1.7 29 181-209 18-46 (91)
318 2vpr_A Tetracycline resistance 75.1 1.1 3.8E-05 33.9 1.6 42 161-212 6-47 (207)
319 1vzw_A Phosphoribosyl isomeras 75.1 10 0.00035 29.2 7.3 79 10-90 147-238 (244)
320 2ef8_A C.ECOT38IS, putative tr 75.1 0.94 3.2E-05 28.6 1.0 31 181-211 15-45 (84)
321 1oyi_A Double-stranded RNA-bin 75.1 1.1 3.8E-05 28.9 1.3 29 180-208 21-49 (82)
322 3ffs_A Inosine-5-monophosphate 75.0 20 0.00068 30.2 9.4 69 7-79 191-274 (400)
323 2hyj_A Putative TETR-family tr 74.9 2.4 8.2E-05 31.4 3.4 43 160-212 13-55 (200)
324 3f6w_A XRE-family like protein 74.9 0.7 2.4E-05 29.3 0.3 31 181-211 19-49 (83)
325 2vws_A YFAU, 2-keto-3-deoxy su 74.9 29 0.00099 27.3 11.6 82 11-94 28-112 (267)
326 3ni7_A Bacterial regulatory pr 74.9 2.7 9.4E-05 31.6 3.8 43 160-212 8-50 (213)
327 2ewt_A BLDD, putative DNA-bind 74.6 0.93 3.2E-05 27.6 0.8 30 181-210 13-44 (71)
328 3lab_A Putative KDPG (2-keto-3 74.4 25 0.00086 26.9 9.1 86 5-92 18-104 (217)
329 4ac0_A Tetracycline repressor 74.3 1.2 4E-05 33.7 1.5 41 162-212 6-46 (202)
330 3qja_A IGPS, indole-3-glycerol 74.0 14 0.00047 29.4 7.8 76 2-80 162-242 (272)
331 1thf_D HISF protein; thermophI 73.6 28 0.00094 26.8 9.5 69 10-80 31-103 (253)
332 2z6i_A Trans-2-enoyl-ACP reduc 73.5 21 0.0007 29.1 9.0 70 7-79 116-190 (332)
333 1eto_A FIS, factor for inversi 73.4 1.1 3.8E-05 30.0 1.0 30 180-209 62-91 (98)
334 3eus_A DNA-binding protein; st 73.2 1 3.5E-05 28.9 0.8 29 181-209 19-47 (86)
335 2xpw_A Tetracycline repressor 72.8 1.2 4.1E-05 33.7 1.2 41 162-212 6-46 (207)
336 3r0a_A Putative transcriptiona 72.8 1.2 4.1E-05 30.9 1.2 39 171-209 22-62 (123)
337 3ajx_A 3-hexulose-6-phosphate 72.8 2.4 8.2E-05 31.9 3.0 81 9-92 10-97 (207)
338 2pz9_A Putative regulatory pro 72.8 1.1 3.7E-05 34.0 1.0 43 160-212 31-73 (226)
339 3kkd_A Transcriptional regulat 72.7 2.4 8.1E-05 32.2 3.0 43 160-212 36-78 (237)
340 3ceu_A Thiamine phosphate pyro 72.6 5 0.00017 30.4 4.8 68 7-79 94-171 (210)
341 2eby_A Putative HTH-type trans 72.4 2.1 7.1E-05 28.9 2.3 32 180-211 14-46 (113)
342 1t33_A Putative transcriptiona 72.4 2.1 7.3E-05 31.9 2.6 42 160-212 13-54 (224)
343 3vk0_A NHTF, transcriptional r 72.0 1.2 4.1E-05 30.3 1.0 30 181-210 26-55 (114)
344 3kz3_A Repressor protein CI; f 71.9 0.84 2.9E-05 28.8 0.1 28 183-210 19-46 (80)
345 1lmb_3 Protein (lambda repress 71.8 1.8 6.1E-05 27.9 1.8 31 181-211 22-52 (92)
346 2gfn_A HTH-type transcriptiona 71.8 2.6 8.7E-05 31.5 2.9 43 160-212 10-52 (209)
347 3ffs_A Inosine-5-monophosphate 71.7 17 0.00058 30.7 8.2 65 12-79 146-211 (400)
348 2p10_A MLL9387 protein; putati 71.7 20 0.00069 28.7 8.1 74 4-80 166-259 (286)
349 2v82_A 2-dehydro-3-deoxy-6-pho 71.5 4.4 0.00015 30.6 4.2 81 8-95 108-197 (212)
350 1bja_A Transcription regulator 71.5 0.99 3.4E-05 30.1 0.4 42 167-208 8-50 (95)
351 2wus_R RODZ, putative uncharac 71.4 1.4 4.8E-05 30.1 1.2 29 181-209 12-40 (112)
352 2jvl_A TRMBF1; coactivator, he 71.3 2.4 8.1E-05 28.5 2.4 30 181-210 39-70 (107)
353 1rd5_A Tryptophan synthase alp 71.2 11 0.00039 29.4 6.7 70 23-93 44-138 (262)
354 3l0g_A Nicotinate-nucleotide p 71.0 17 0.00059 29.3 7.7 67 5-78 211-277 (300)
355 1yxy_A Putative N-acetylmannos 70.9 15 0.00053 28.0 7.4 68 7-79 139-214 (234)
356 3loc_A HTH-type transcriptiona 70.7 1.4 4.8E-05 32.5 1.2 42 161-212 20-61 (212)
357 2heo_A Z-DNA binding protein 1 70.5 0.92 3.1E-05 27.9 0.1 30 181-210 15-46 (67)
358 1viz_A PCRB protein homolog; s 70.2 8.8 0.0003 30.0 5.7 59 12-79 23-83 (240)
359 4fo4_A Inosine 5'-monophosphat 70.1 21 0.00071 29.7 8.3 69 7-79 156-239 (366)
360 2f6u_A GGGPS, (S)-3-O-geranylg 70.0 6.9 0.00024 30.5 5.0 61 12-81 23-85 (234)
361 3mlf_A Transcriptional regulat 69.8 1.4 4.7E-05 30.0 0.9 32 178-209 25-56 (111)
362 3w01_A Heptaprenylglyceryl pho 69.8 8.3 0.00028 30.1 5.4 60 12-80 26-87 (235)
363 3paj_A Nicotinate-nucleotide p 69.8 33 0.0011 27.9 9.2 66 5-78 235-301 (320)
364 1eep_A Inosine 5'-monophosphat 69.7 17 0.0006 30.4 7.9 70 7-79 201-284 (404)
365 2p7v_B Sigma-70, RNA polymeras 69.6 3.2 0.00011 25.1 2.5 21 187-207 23-43 (68)
366 2np3_A Putative TETR-family re 69.4 1.2 4.2E-05 33.2 0.6 42 161-212 32-73 (212)
367 3kxa_A NGO0477 protein, putati 69.0 1 3.5E-05 32.2 0.1 32 180-211 72-103 (141)
368 1b0n_A Protein (SINR protein); 68.8 1.6 5.3E-05 29.2 1.0 31 181-211 6-36 (111)
369 3ezx_A MMCP 1, monomethylamine 68.7 16 0.00055 27.8 6.9 74 2-80 120-203 (215)
370 1g5t_A COB(I)alamin adenosyltr 68.6 9.8 0.00034 28.7 5.5 47 23-69 119-170 (196)
371 1r71_A Transcriptional repress 68.6 1.9 6.6E-05 32.2 1.5 27 189-215 52-78 (178)
372 2gjl_A Hypothetical protein PA 68.5 34 0.0011 27.7 9.2 62 10-80 84-145 (328)
373 3npi_A TETR family regulatory 68.4 1.4 4.7E-05 34.0 0.7 43 160-212 19-61 (251)
374 3fym_A Putative uncharacterize 68.3 1.5 5.1E-05 30.8 0.8 28 182-209 9-36 (130)
375 2fbq_A Probable transcriptiona 68.3 5.1 0.00018 30.4 4.0 42 161-212 9-50 (235)
376 3f4w_A Putative hexulose 6 pho 68.0 6.3 0.00022 29.6 4.4 83 9-93 10-98 (211)
377 1dxe_A 2-dehydro-3-deoxy-galac 68.0 41 0.0014 26.2 11.4 82 10-93 28-112 (256)
378 3uj3_X DNA-invertase; helix-tu 67.6 1.1 3.8E-05 33.6 0.0 35 180-215 150-184 (193)
379 2o8x_A Probable RNA polymerase 67.5 2.7 9.4E-05 25.3 1.9 28 181-208 23-50 (70)
380 2ict_A Antitoxin HIGA; helix-t 67.3 1.3 4.4E-05 28.8 0.3 31 181-211 13-43 (94)
381 2ppx_A AGR_C_3184P, uncharacte 67.2 1.5 5.2E-05 28.9 0.6 30 180-209 34-63 (99)
382 1ojl_A Transcriptional regulat 67.1 2.4 8.2E-05 34.2 1.9 31 180-210 272-302 (304)
383 1j9i_A GPNU1 DBD;, terminase s 67.1 1.3 4.5E-05 27.1 0.3 23 190-212 3-25 (68)
384 3or1_C Sulfite reductase GAMA; 67.0 8.9 0.0003 25.9 4.4 46 158-214 43-88 (105)
385 3op9_A PLI0006 protein; struct 67.0 1.3 4.5E-05 29.9 0.3 30 180-209 13-42 (114)
386 2o38_A Hypothetical protein; a 66.9 1.8 6.1E-05 30.0 1.0 32 180-211 44-75 (120)
387 2l49_A C protein; P2 bacteriop 66.8 1.7 5.7E-05 28.4 0.8 31 180-210 8-38 (99)
388 3vk5_A MOEO5; TIM barrel, tran 66.7 13 0.00045 29.8 6.1 56 25-81 200-257 (286)
389 3gnn_A Nicotinate-nucleotide p 66.6 24 0.00082 28.5 7.7 65 6-77 214-278 (298)
390 1qv9_A F420-dependent methylen 66.5 8.5 0.00029 30.1 4.7 60 19-81 61-120 (283)
391 1ku9_A Hypothetical protein MJ 66.4 3.1 0.00011 29.0 2.3 48 162-209 13-61 (152)
392 2v79_A DNA replication protein 66.2 1.8 6.2E-05 30.7 0.9 50 159-208 16-70 (135)
393 1gdt_A GD resolvase, protein ( 66.0 1.9 6.6E-05 32.0 1.1 32 179-211 149-180 (183)
394 3ivp_A Putative transposon-rel 65.9 1.9 6.5E-05 29.7 1.0 30 181-210 17-46 (126)
395 1izc_A Macrophomate synthase i 65.9 54 0.0019 26.9 10.1 82 11-94 52-139 (339)
396 3khj_A Inosine-5-monophosphate 65.8 17 0.00059 30.1 7.0 70 7-79 152-235 (361)
397 2g3b_A Putative TETR-family tr 65.6 1.8 6.3E-05 32.3 0.9 42 161-212 5-46 (208)
398 1tqj_A Ribulose-phosphate 3-ep 65.5 8.6 0.00029 29.7 4.8 82 10-94 18-108 (230)
399 3bd1_A CRO protein; transcript 65.3 1.2 4.1E-05 28.0 -0.2 18 191-208 13-30 (79)
400 2elh_A CG11849-PA, LD40883P; s 65.0 6.8 0.00023 25.1 3.5 21 188-208 37-57 (87)
401 1fse_A GERE; helix-turn-helix 65.0 4.3 0.00015 24.7 2.5 27 180-207 18-44 (74)
402 4ich_A Transcriptional regulat 65.0 4.2 0.00014 32.5 3.0 44 159-212 120-163 (311)
403 2jn6_A Protein CGL2762, transp 65.0 3.1 0.00011 27.2 1.9 28 181-208 14-42 (97)
404 4fxs_A Inosine-5'-monophosphat 64.5 14 0.00047 32.1 6.4 64 12-79 234-299 (496)
405 2fu4_A Ferric uptake regulatio 64.4 7.4 0.00025 24.4 3.6 30 180-209 21-58 (83)
406 3f4w_A Putative hexulose 6 pho 64.2 32 0.0011 25.6 7.8 78 10-93 115-205 (211)
407 3cec_A Putative antidote prote 63.9 1.6 5.6E-05 28.9 0.3 31 181-211 23-53 (104)
408 3f52_A CLP gene regulator (CLG 63.9 1.5 5.2E-05 29.8 0.1 30 181-210 33-62 (117)
409 2c6q_A GMP reductase 2; TIM ba 63.2 31 0.0011 28.4 8.1 73 6-82 167-255 (351)
410 2fbh_A Transcriptional regulat 63.2 5.9 0.0002 27.4 3.2 44 166-209 28-72 (146)
411 3iwp_A Copper homeostasis prot 63.0 26 0.00089 28.1 7.2 84 7-93 45-150 (287)
412 2kko_A Possible transcriptiona 62.9 7.2 0.00024 26.1 3.5 44 163-208 14-57 (108)
413 2yum_A ZZZ3 protein, zinc fing 62.8 12 0.00041 23.2 4.3 51 153-205 8-61 (75)
414 4e38_A Keto-hydroxyglutarate-a 62.5 22 0.00077 27.5 6.6 81 5-87 39-120 (232)
415 3o9x_A Uncharacterized HTH-typ 62.2 2.2 7.7E-05 29.7 0.8 33 177-209 72-104 (133)
416 3inp_A D-ribulose-phosphate 3- 62.2 12 0.00042 29.3 5.1 83 10-94 41-130 (246)
417 1ku3_A Sigma factor SIGA; heli 61.9 4 0.00014 25.1 1.8 21 188-208 29-49 (73)
418 1jvn_A Glutamine, bifunctional 61.8 60 0.0021 28.5 10.1 78 12-91 455-543 (555)
419 2l0k_A Stage III sporulation p 61.3 1.9 6.5E-05 28.5 0.2 31 181-211 12-42 (93)
420 4avf_A Inosine-5'-monophosphat 60.9 23 0.00078 30.7 7.1 67 10-79 229-297 (490)
421 1qgp_A Protein (double strande 60.9 4.1 0.00014 25.7 1.7 19 189-207 31-49 (77)
422 1qbj_A Protein (double-strande 60.6 2.2 7.4E-05 27.4 0.4 19 189-207 27-45 (81)
423 1jub_A Dihydroorotate dehydrog 60.6 41 0.0014 26.8 8.2 67 11-79 108-191 (311)
424 2id6_A Transcriptional regulat 60.3 2.5 8.4E-05 31.3 0.7 42 161-212 7-48 (202)
425 1jcn_A Inosine monophosphate d 60.2 36 0.0012 29.5 8.3 69 7-78 303-385 (514)
426 1je8_A Nitrate/nitrite respons 60.2 5.8 0.0002 25.1 2.5 27 180-207 28-54 (82)
427 1ep3_A Dihydroorotate dehydrog 60.1 53 0.0018 26.0 8.8 56 40-95 230-291 (311)
428 1y80_A Predicted cobalamin bin 59.9 19 0.00064 27.1 5.8 74 2-80 116-197 (210)
429 1r8j_A KAIA; circadian clock p 59.8 64 0.0022 25.6 9.7 94 3-98 34-130 (289)
430 3vzx_A Heptaprenylglyceryl pho 59.7 13 0.00044 28.8 4.7 58 13-79 22-81 (228)
431 3usb_A Inosine-5'-monophosphat 59.7 40 0.0014 29.3 8.5 71 7-80 304-388 (511)
432 1y0u_A Arsenical resistance op 59.6 3.9 0.00013 26.6 1.6 29 180-209 35-63 (96)
433 3s2w_A Transcriptional regulat 59.6 6.5 0.00022 27.9 2.9 47 163-209 38-84 (159)
434 1zx4_A P1 PARB, plasmid partit 59.4 3.9 0.00013 30.9 1.7 23 187-209 22-44 (192)
435 1lj9_A Transcriptional regulat 59.1 4.2 0.00014 28.2 1.8 43 167-209 21-63 (144)
436 1geq_A Tryptophan synthase alp 59.0 26 0.00088 26.9 6.6 67 10-80 144-220 (248)
437 3tqv_A Nicotinate-nucleotide p 59.0 41 0.0014 27.0 7.7 66 6-78 203-268 (287)
438 2rre_A NVL2, putative uncharac 58.9 9.2 0.00031 24.3 3.1 42 160-210 13-56 (78)
439 1x3u_A Transcriptional regulat 58.8 5.9 0.0002 24.5 2.3 27 180-207 23-49 (79)
440 3ovp_A Ribulose-phosphate 3-ep 58.6 19 0.00066 27.7 5.7 69 25-94 135-216 (228)
441 2r0q_C Putative transposon TN5 58.2 4.4 0.00015 30.7 1.9 32 181-213 168-199 (209)
442 1y9q_A Transcriptional regulat 57.8 3 0.0001 30.9 0.9 31 181-211 16-46 (192)
443 2bnm_A Epoxidase; oxidoreducta 57.1 3.3 0.00011 30.8 1.0 30 181-210 15-44 (198)
444 3g3z_A NMB1585, transcriptiona 57.1 3.7 0.00013 28.6 1.2 49 161-209 17-65 (145)
445 3cdh_A Transcriptional regulat 56.9 7.1 0.00024 27.5 2.7 47 163-209 31-77 (155)
446 3hug_A RNA polymerase sigma fa 56.9 5.3 0.00018 25.8 1.9 29 180-208 44-72 (92)
447 1vrd_A Inosine-5'-monophosphat 56.6 51 0.0017 28.3 8.6 70 7-79 285-368 (494)
448 3jth_A Transcription activator 56.3 5.1 0.00017 26.1 1.7 29 180-208 27-55 (98)
449 2qjg_A Putative aldolase MJ040 56.3 68 0.0023 24.9 9.0 78 12-95 169-257 (273)
450 3qja_A IGPS, indole-3-glycerol 56.3 43 0.0015 26.5 7.5 55 40-94 102-158 (272)
451 1ujp_A Tryptophan synthase alp 56.3 6.6 0.00023 31.2 2.7 57 40-96 80-142 (271)
452 3ech_A MEXR, multidrug resista 56.3 5.8 0.0002 27.5 2.1 47 163-209 23-71 (142)
453 1vs1_A 3-deoxy-7-phosphoheptul 56.3 26 0.0009 27.9 6.2 85 10-95 160-271 (276)
454 2p5k_A Arginine repressor; DNA 56.2 5.5 0.00019 23.5 1.7 23 187-209 17-44 (64)
455 3tqv_A Nicotinate-nucleotide p 56.2 34 0.0012 27.4 6.8 67 26-94 170-239 (287)
456 3c57_A Two component transcrip 56.1 4 0.00014 26.7 1.1 25 180-205 34-58 (95)
457 3bj6_A Transcriptional regulat 55.7 4.6 0.00016 28.3 1.5 46 163-208 28-73 (152)
458 3bdn_A Lambda repressor; repre 55.5 6.1 0.00021 30.2 2.3 32 180-211 21-52 (236)
459 3hsr_A HTH-type transcriptiona 54.8 3.9 0.00013 28.5 1.0 46 164-209 25-70 (140)
460 2yzr_A Pyridoxal biosynthesis 54.8 39 0.0013 27.7 7.0 59 39-97 228-293 (330)
461 1zco_A 2-dehydro-3-deoxyphosph 54.7 44 0.0015 26.3 7.2 80 12-95 147-256 (262)
462 3tsm_A IGPS, indole-3-glycerol 54.5 78 0.0027 25.0 9.3 75 1-79 168-248 (272)
463 2fa5_A Transcriptional regulat 54.2 7 0.00024 27.7 2.3 41 169-209 43-83 (162)
464 3khj_A Inosine-5-monophosphate 54.0 48 0.0016 27.4 7.7 65 12-79 107-172 (361)
465 2d1h_A ST1889, 109AA long hypo 53.9 2.6 9E-05 27.7 -0.1 30 180-209 26-56 (109)
466 3dn7_A Cyclic nucleotide bindi 53.9 2.7 9.3E-05 30.8 0.0 23 189-211 168-190 (194)
467 1rd5_A Tryptophan synthase alp 53.8 17 0.00059 28.3 4.8 42 39-80 189-230 (262)
468 3lfp_A CSP231I C protein; tran 53.7 2.9 9.8E-05 27.4 0.1 29 181-209 6-38 (98)
469 3bro_A Transcriptional regulat 53.6 6.3 0.00021 27.1 1.9 46 164-209 23-70 (141)
470 3k0l_A Repressor protein; heli 53.5 7.1 0.00024 27.8 2.2 43 167-209 38-80 (162)
471 3l0g_A Nicotinate-nucleotide p 53.2 41 0.0014 27.1 6.8 51 42-94 197-248 (300)
472 3usb_A Inosine-5'-monophosphat 53.1 38 0.0013 29.4 7.2 67 10-79 256-324 (511)
473 4avf_A Inosine-5'-monophosphat 53.1 58 0.002 28.1 8.4 69 7-79 277-360 (490)
474 1tty_A Sigma-A, RNA polymerase 53.0 6.2 0.00021 25.2 1.7 21 188-208 37-57 (87)
475 2gxg_A 146AA long hypothetical 53.0 7.8 0.00027 26.8 2.4 45 164-209 26-70 (146)
476 3bpv_A Transcriptional regulat 52.8 4.5 0.00015 27.8 1.0 41 169-209 23-63 (138)
477 2nv1_A Pyridoxal biosynthesis 52.7 15 0.00053 29.4 4.4 42 39-80 195-238 (305)
478 2qww_A Transcriptional regulat 51.9 5.8 0.0002 27.9 1.5 46 164-209 30-75 (154)
479 2gek_A Phosphatidylinositol ma 51.7 92 0.0032 25.0 9.6 77 12-98 274-350 (406)
480 2jpc_A SSRB; DNA binding prote 51.6 5.1 0.00017 23.4 1.0 26 181-207 6-31 (61)
481 4dyq_A Gene 1 protein; GP1, oc 51.3 4.7 0.00016 28.6 0.9 28 180-208 20-48 (140)
482 3r1f_A ESX-1 secretion-associa 51.1 7.1 0.00024 27.5 1.9 22 188-209 25-51 (135)
483 2htj_A P fimbrial regulatory p 51.0 7.8 0.00027 24.3 1.9 22 187-208 12-33 (81)
484 2rdx_A Mandelate racemase/muco 50.5 58 0.002 26.8 7.7 78 10-92 201-279 (379)
485 4hbl_A Transcriptional regulat 50.4 6.2 0.00021 27.7 1.5 43 166-208 32-74 (149)
486 3r2g_A Inosine 5'-monophosphat 50.4 34 0.0012 28.4 6.1 77 1-79 91-168 (361)
487 3sgz_A Hydroxyacid oxidase 2; 50.1 79 0.0027 26.1 8.3 73 5-80 222-301 (352)
488 3qwg_A ESX-1 secretion-associa 49.9 6.8 0.00023 27.1 1.6 22 188-209 23-49 (123)
489 1rzs_A Antirepressor, regulato 49.5 6.5 0.00022 23.3 1.2 22 189-210 10-31 (61)
490 3mkl_A HTH-type transcriptiona 49.5 13 0.00044 25.1 3.0 31 181-211 63-94 (120)
491 1qpo_A Quinolinate acid phosph 49.5 36 0.0012 27.2 5.9 68 6-78 199-267 (284)
492 2f6u_A GGGPS, (S)-3-O-geranylg 49.4 33 0.0011 26.6 5.6 53 26-80 165-218 (234)
493 2oz6_A Virulence factor regula 49.4 3.9 0.00013 30.2 0.2 23 189-211 164-186 (207)
494 1h1y_A D-ribulose-5-phosphate 49.2 49 0.0017 25.1 6.6 67 12-79 126-200 (228)
495 1jcn_A Inosine monophosphate d 49.1 50 0.0017 28.5 7.4 66 11-79 256-323 (514)
496 4hjf_A Ggdef family protein; s 48.6 0.91 3.1E-05 37.5 -3.7 47 128-176 92-138 (340)
497 1nr3_A MTH0916, DNA-binding pr 48.3 2.9 0.0001 28.8 -0.6 22 188-209 4-25 (122)
498 1ypf_A GMP reductase; GUAC, pu 48.2 1.1E+02 0.0037 24.8 9.2 68 8-79 157-238 (336)
499 1p0k_A Isopentenyl-diphosphate 48.2 93 0.0032 25.2 8.6 44 37-80 236-280 (349)
500 3jr2_A Hexulose-6-phosphate sy 48.0 11 0.00037 28.7 2.6 84 8-93 15-104 (218)
No 1
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=99.90 E-value=1.6e-23 Score=153.97 Aligned_cols=94 Identities=28% Similarity=0.568 Sum_probs=86.9
Q ss_pred CCcE-EEEECCHHHHHHHHHhCCCCceEEEEccCCCCCCHHHHHHHHhcC---CCCcEEEEeccCCHHHHHHHHhCCcce
Q 027234 1 MGFS-VTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVGLE---MDLPVIMMCAHGSKEVVMKGVTHDACD 76 (226)
Q Consensus 1 lg~~-V~~~~~~~eal~~l~~~~~~~DlVl~D~~mp~~dG~~l~~~l~~~---~~~pvI~ls~~~~~~~~~~a~~~ga~~ 76 (226)
+||. |.+|.||.+|++.+++.. ||+||+|++||+|||+++++.|+.. +++|||++|+..+.+...++++.||++
T Consensus 35 ~G~~~v~~a~~g~~al~~~~~~~--~DlillD~~MP~mdG~el~~~ir~~~~~~~ipvI~lTa~~~~~~~~~~~~~Ga~~ 112 (134)
T 3to5_A 35 LGFNNTQEADDGLTALPMLKKGD--FDFVVTDWNMPGMQGIDLLKNIRADEELKHLPVLMITAEAKREQIIEAAQAGVNG 112 (134)
T ss_dssp TTCCCEEEESSHHHHHHHHHHHC--CSEEEEESCCSSSCHHHHHHHHHHSTTTTTCCEEEEESSCCHHHHHHHHHTTCCE
T ss_pred cCCcEEEEECCHHHHHHHHHhCC--CCEEEEcCCCCCCCHHHHHHHHHhCCCCCCCeEEEEECCCCHHHHHHHHHCCCCE
Confidence 5886 678999999999999877 9999999999999999999999843 579999999999999999999999999
Q ss_pred EEeCCCCHHHHHHHHHHHHH
Q 027234 77 YLTKPVRIEELKNIWQHVVR 96 (226)
Q Consensus 77 yl~KP~~~~~L~~~l~~~~~ 96 (226)
||.|||++++|...++++++
T Consensus 113 yl~KP~~~~~L~~~i~~~l~ 132 (134)
T 3to5_A 113 YIVKPFTAATLKEKLDKIFE 132 (134)
T ss_dssp EEESSCCHHHHHHHHHHHCC
T ss_pred EEECCCCHHHHHHHHHHHHh
Confidence 99999999999999998764
No 2
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=99.87 E-value=4.6e-22 Score=153.45 Aligned_cols=98 Identities=19% Similarity=0.395 Sum_probs=90.7
Q ss_pred CCcEEEEECCHHHHHHHHHhCCCCceEEEEccCCCCCCHHHHHHHHh-cCCCCcEEEEeccCCHHHHHHHHhCCcceEEe
Q 027234 1 MGFSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVG-LEMDLPVIMMCAHGSKEVVMKGVTHDACDYLT 79 (226)
Q Consensus 1 lg~~V~~~~~~~eal~~l~~~~~~~DlVl~D~~mp~~dG~~l~~~l~-~~~~~pvI~ls~~~~~~~~~~a~~~ga~~yl~ 79 (226)
.||.|..|.++.+|++.+.... ||+||+|+.||+++|+++++.++ ..+.+|||++|+..+.+...+++..||++||.
T Consensus 30 ~g~~v~~~~~~~~al~~~~~~~--~dlvl~D~~lp~~~g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~a~~~Ga~~~l~ 107 (184)
T 3rqi_A 30 RGYAVRQAHNKDEALKLAGAEK--FEFITVXLHLGNDSGLSLIAPLCDLQPDARILVLTGYASIATAVQAVKDGADNYLA 107 (184)
T ss_dssp TTCEEEEECSHHHHHHHHTTSC--CSEEEECSEETTEESHHHHHHHHHHCTTCEEEEEESSCCHHHHHHHHHHTCSEEEE
T ss_pred CCCEEEEeCCHHHHHHHHhhCC--CCEEEEeccCCCccHHHHHHHHHhcCCCCCEEEEeCCCCHHHHHHHHHhCHHHhee
Confidence 4899999999999999998866 99999999999999999999997 46789999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhh
Q 027234 80 KPVRIEELKNIWQHVVRKRKN 100 (226)
Q Consensus 80 KP~~~~~L~~~l~~~~~~~~~ 100 (226)
||++.++|...+++++.....
T Consensus 108 KP~~~~~L~~~i~~~~~~~~~ 128 (184)
T 3rqi_A 108 KPANVESILAALQTNASEVQA 128 (184)
T ss_dssp SSCCHHHHHHHTSTTHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHhhh
Confidence 999999999999988766543
No 3
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=99.83 E-value=8.9e-20 Score=131.12 Aligned_cols=93 Identities=26% Similarity=0.446 Sum_probs=86.8
Q ss_pred CCcEEEEECCHHHHHHHHHhCCCCceEEEEccCCCCCCHHHHHHHHhcC---CCCcEEEEeccCCHHHHHHHHhCCcceE
Q 027234 1 MGFSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVGLE---MDLPVIMMCAHGSKEVVMKGVTHDACDY 77 (226)
Q Consensus 1 lg~~V~~~~~~~eal~~l~~~~~~~DlVl~D~~mp~~dG~~l~~~l~~~---~~~pvI~ls~~~~~~~~~~a~~~ga~~y 77 (226)
.||+|..+.++.+|++.+.... ||+||+|+.||+++|+++++.++.. +.+|||++|+..+.+...++++.||++|
T Consensus 25 ~g~~v~~~~~~~~al~~l~~~~--~dlvllD~~~p~~~g~~~~~~l~~~~~~~~~pii~~s~~~~~~~~~~~~~~Ga~~~ 102 (122)
T 3gl9_A 25 EGYEVIEAENGQIALEKLSEFT--PDLIVLXIMMPVMDGFTVLKKLQEKEEWKRIPVIVLTAKGGEEDESLALSLGARKV 102 (122)
T ss_dssp TTCEEEEESSHHHHHHHHTTBC--CSEEEECSCCSSSCHHHHHHHHHTSTTTTTSCEEEEESCCSHHHHHHHHHTTCSEE
T ss_pred CCcEEEEeCCHHHHHHHHHhcC--CCEEEEeccCCCCcHHHHHHHHHhcccccCCCEEEEecCCchHHHHHHHhcChhhh
Confidence 4899999999999999998866 9999999999999999999999743 5799999999999999999999999999
Q ss_pred EeCCCCHHHHHHHHHHHH
Q 027234 78 LTKPVRIEELKNIWQHVV 95 (226)
Q Consensus 78 l~KP~~~~~L~~~l~~~~ 95 (226)
|.||++.++|...+++++
T Consensus 103 l~KP~~~~~L~~~i~~~l 120 (122)
T 3gl9_A 103 MRKPFSPSQFIEEVKHLL 120 (122)
T ss_dssp EESSCCHHHHHHHHHHHH
T ss_pred ccCCCCHHHHHHHHHHHh
Confidence 999999999999998876
No 4
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=99.83 E-value=7.4e-21 Score=118.84 Aligned_cols=61 Identities=59% Similarity=0.958 Sum_probs=58.8
Q ss_pred ccCCceeeeHhhHHHHHHHHHHhCCCCCCchHHHHhhCCCCCCHHHHHHHhhhhhhhhhcc
Q 027234 149 LKKPRLVWSVELHQQFVSAVKELGFDKAGPKKILELMNIPGLTRENVASHLQKHRLYLSRL 209 (226)
Q Consensus 149 ~~~~~~~~~~~l~~~Fi~~~~~~g~~~~~p~~I~~~~~~~~lt~~~va~~l~~~r~~l~r~ 209 (226)
.+++++.||.++|.+|+.+++++|.+++.|+.|+++|++++||+++|+|||||||.+++|+
T Consensus 3 ~~k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR~~l~r~ 63 (64)
T 1irz_A 3 QKKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFRVALKKV 63 (64)
T ss_dssp CCCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHSC
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHHHHHHHcc
Confidence 3679999999999999999999999999999999999999999999999999999999986
No 5
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=99.83 E-value=6.3e-20 Score=131.46 Aligned_cols=94 Identities=28% Similarity=0.445 Sum_probs=88.1
Q ss_pred CCcEEEEECCHHHHHHHHHhCCCCceEEEEccCCCCCCHHHHHHHHhcCCCCcEEEEeccCCHHHHHHHHhCCcceEEeC
Q 027234 1 MGFSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVGLEMDLPVIMMCAHGSKEVVMKGVTHDACDYLTK 80 (226)
Q Consensus 1 lg~~V~~~~~~~eal~~l~~~~~~~DlVl~D~~mp~~dG~~l~~~l~~~~~~pvI~ls~~~~~~~~~~a~~~ga~~yl~K 80 (226)
.||+|..+.++.+|++.+.... ||+||+|+.||+++|+++++.++....+|+|++|+..+......+++.||++||.|
T Consensus 25 ~g~~v~~~~~~~~al~~~~~~~--~dlii~D~~~p~~~g~~~~~~lr~~~~~~ii~~t~~~~~~~~~~~~~~ga~~~l~K 102 (120)
T 3f6p_A 25 EGYEVHCAHDGNEAVEMVEELQ--PDLILLDIMLPNKDGVEVCREVRKKYDMPIIMLTAKDSEIDKVIGLEIGADDYVTK 102 (120)
T ss_dssp TTCEEEEESSHHHHHHHHHTTC--CSEEEEETTSTTTHHHHHHHHHHTTCCSCEEEEEESSCHHHHHHHHHTTCCEEEEE
T ss_pred CCEEEEEeCCHHHHHHHHhhCC--CCEEEEeCCCCCCCHHHHHHHHHhcCCCCEEEEECCCChHHHHHHHhCCcceeEcC
Confidence 4899999999999999999876 99999999999999999999998777899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHH
Q 027234 81 PVRIEELKNIWQHVVR 96 (226)
Q Consensus 81 P~~~~~L~~~l~~~~~ 96 (226)
|++.++|...++++++
T Consensus 103 P~~~~~l~~~i~~~l~ 118 (120)
T 3f6p_A 103 PFSTRELLARVKANLR 118 (120)
T ss_dssp SCCHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHh
Confidence 9999999999988764
No 6
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=99.82 E-value=2.1e-19 Score=131.56 Aligned_cols=97 Identities=30% Similarity=0.507 Sum_probs=88.7
Q ss_pred CCcEEEEECCHHHHHHHHHhCCCCceEEEEccCCCCCCHHHHHHHHhc---CCCCcEEEEeccCCHHHHHHHHhCCcceE
Q 027234 1 MGFSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVGL---EMDLPVIMMCAHGSKEVVMKGVTHDACDY 77 (226)
Q Consensus 1 lg~~V~~~~~~~eal~~l~~~~~~~DlVl~D~~mp~~dG~~l~~~l~~---~~~~pvI~ls~~~~~~~~~~a~~~ga~~y 77 (226)
.||.|..+.++.+|++.+.... ||+||+|+.||+++|+++++.++. .+.+|||++|+..+.+...+++..||++|
T Consensus 27 ~g~~v~~~~~~~~al~~~~~~~--~dlvl~D~~lp~~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~~~~~ga~~~ 104 (136)
T 3t6k_A 27 AGYEVRRAASGEEALQQIYKNL--PDALICDVLLPGIDGYTLCKRVRQHPLTKTLPILMLTAQGDISAKIAGFEAGANDY 104 (136)
T ss_dssp TTCEEEEESSHHHHHHHHHHSC--CSEEEEESCCSSSCHHHHHHHHHHSGGGTTCCEEEEECTTCHHHHHHHHHHTCSEE
T ss_pred CCCEEEEeCCHHHHHHHHHhCC--CCEEEEeCCCCCCCHHHHHHHHHcCCCcCCccEEEEecCCCHHHHHHHHhcCcceE
Confidence 4899999999999999999876 999999999999999999999974 35799999999999999999999999999
Q ss_pred EeCCCCHHHHHHHHHHHHHHHh
Q 027234 78 LTKPVRIEELKNIWQHVVRKRK 99 (226)
Q Consensus 78 l~KP~~~~~L~~~l~~~~~~~~ 99 (226)
|.||++.++|...+++++.+..
T Consensus 105 l~KP~~~~~L~~~i~~~l~~~~ 126 (136)
T 3t6k_A 105 LAKPFEPQELVYRVKNILARTT 126 (136)
T ss_dssp EETTCCHHHHHHHHHHHHHC--
T ss_pred EeCCCCHHHHHHHHHHHHhccC
Confidence 9999999999999999886543
No 7
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=99.81 E-value=1.9e-21 Score=140.60 Aligned_cols=89 Identities=26% Similarity=0.445 Sum_probs=78.2
Q ss_pred CCcEEE-EECCHHHHHHHHHhCCCCceEEEEccCCCCCCHHHHHHHHhcCCCCcEEEEeccCCHHHHHHHHhCCcceEEe
Q 027234 1 MGFSVT-KCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVGLEMDLPVIMMCAHGSKEVVMKGVTHDACDYLT 79 (226)
Q Consensus 1 lg~~V~-~~~~~~eal~~l~~~~~~~DlVl~D~~mp~~dG~~l~~~l~~~~~~pvI~ls~~~~~~~~~~a~~~ga~~yl~ 79 (226)
+||+|. +|.|+.+|++.+++.. ||+||+|++||+|||+++++.+++ .++|||++|++.+... +.++|+++||.
T Consensus 31 ~G~~v~~~a~~g~eAl~~~~~~~--~DlvllDi~mP~~~G~el~~~lr~-~~ipvI~lTa~~~~~~---~~~~g~~~yl~ 104 (123)
T 2lpm_A 31 LGHEVAATASRMQEALDIARKGQ--FDIAIIDVNLDGEPSYPVADILAE-RNVPFIFATGYGSKGL---DTRYSNIPLLT 104 (123)
T ss_dssp HCCCCCBCSCCHHHHHHHHHHCC--SSEEEECSSSSSCCSHHHHHHHHH-TCCSSCCBCTTCTTSC---CSSSCSCSCBC
T ss_pred CCCEEEEEECCHHHHHHHHHhCC--CCEEEEecCCCCCCHHHHHHHHHc-CCCCEEEEecCccHHH---HHhCCCCcEEE
Confidence 489875 7899999999999876 999999999999999999999985 4799999999876543 45679999999
Q ss_pred CCCCHHHHHHHHHHHH
Q 027234 80 KPVRIEELKNIWQHVV 95 (226)
Q Consensus 80 KP~~~~~L~~~l~~~~ 95 (226)
|||+.++|..+++++.
T Consensus 105 KP~~~~~L~~~l~~~~ 120 (123)
T 2lpm_A 105 KPFLDSELEAVLVQIS 120 (123)
T ss_dssp SSSSHHHHHHHHSTTC
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9999999999887653
No 8
>1s8n_A Putative antiterminator; RV1626, structural genomics, transcriptional antiterminator, component system, PSI; 1.48A {Mycobacterium tuberculosis} SCOP: c.23.1.1 PDB: 1sd5_A
Probab=99.80 E-value=5.9e-19 Score=137.97 Aligned_cols=99 Identities=23% Similarity=0.410 Sum_probs=90.3
Q ss_pred CCcEEE-EECCHHHHHHHHHhCCCCceEEEEccCCCCCCHHHHHHHHhcCCCCcEEEEeccCCHHHHHHHHhCCcceEEe
Q 027234 1 MGFSVT-KCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVGLEMDLPVIMMCAHGSKEVVMKGVTHDACDYLT 79 (226)
Q Consensus 1 lg~~V~-~~~~~~eal~~l~~~~~~~DlVl~D~~mp~~dG~~l~~~l~~~~~~pvI~ls~~~~~~~~~~a~~~ga~~yl~ 79 (226)
.||.|. .+.++.+|++.+.... ||+||+|+.||+++|+++++.++.....|||++|+..+.+....++..||++||.
T Consensus 36 ~g~~v~~~~~~~~~al~~~~~~~--~dlvi~D~~~p~~~g~~~~~~l~~~~~~pii~lt~~~~~~~~~~~~~~ga~~~l~ 113 (205)
T 1s8n_A 36 EGYEIVGEAGDGQEAVELAELHK--PDLVIMDVKMPRRDGIDAASEIASKRIAPIVVLTAFSQRDLVERARDAGAMAYLV 113 (205)
T ss_dssp TTCEEEEEESSHHHHHHHHHHHC--CSEEEEESSCSSSCHHHHHHHHHHTTCSCEEEEEEGGGHHHHHTTGGGSCEEEEE
T ss_pred CCCEEEEEeCCHHHHHHHHhhcC--CCEEEEeCCCCCCChHHHHHHHHhcCCCCEEEEecCCCHHHHHHHHhcCCcEEEe
Confidence 489988 8999999999998876 9999999999999999999999865556999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhhh
Q 027234 80 KPVRIEELKNIWQHVVRKRKNE 101 (226)
Q Consensus 80 KP~~~~~L~~~l~~~~~~~~~~ 101 (226)
||++.++|...++.++......
T Consensus 114 KP~~~~~L~~~i~~~~~~~~~~ 135 (205)
T 1s8n_A 114 KPFSISDLIPAIELAVSRFREI 135 (205)
T ss_dssp ESCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998765443
No 9
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=99.79 E-value=2.5e-18 Score=124.94 Aligned_cols=100 Identities=23% Similarity=0.361 Sum_probs=91.2
Q ss_pred CCcEEEEECCHHHHHHHHHhCCCCceEEEEccCCCCCCHHHHHHHHh-cCCCCcEEEEeccCCHHHHHHHHhCCcceEEe
Q 027234 1 MGFSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVG-LEMDLPVIMMCAHGSKEVVMKGVTHDACDYLT 79 (226)
Q Consensus 1 lg~~V~~~~~~~eal~~l~~~~~~~DlVl~D~~mp~~dG~~l~~~l~-~~~~~pvI~ls~~~~~~~~~~a~~~ga~~yl~ 79 (226)
.||.|..+.++.+|++.+.... ||+||+|+.||+++|+++++.++ ..+.+|+|++|+..+.+....+++.||++||.
T Consensus 26 ~g~~v~~~~~~~~al~~~~~~~--~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~ 103 (132)
T 3crn_A 26 EGYEVEIAATAGEGLAKIENEF--FNLALFXIKLPDMEGTELLEKAHKLRPGMKKIMVTGYASLENSVFSLNAGADAYIM 103 (132)
T ss_dssp TTCEEEEESSHHHHHHHHHHSC--CSEEEECSBCSSSBHHHHHHHHHHHCTTSEEEEEESCCCHHHHHHHHHTTCSEEEE
T ss_pred CCceEEEeCCHHHHHHHHhcCC--CCEEEEecCCCCCchHHHHHHHHhhCCCCcEEEEeccccHHHHHHHHhccchhhcc
Confidence 4799999999999999998866 99999999999999999999997 45789999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhhhh
Q 027234 80 KPVRIEELKNIWQHVVRKRKNER 102 (226)
Q Consensus 80 KP~~~~~L~~~l~~~~~~~~~~~ 102 (226)
||++.++|...+++++++.....
T Consensus 104 KP~~~~~L~~~i~~~~~~~~~~~ 126 (132)
T 3crn_A 104 KPVNPRDLLEKIKEKLDEQEKEG 126 (132)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhcccCCC
Confidence 99999999999999887655433
No 10
>2r25_B Osmosensing histidine protein kinase SLN1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: c.23.1.1 PDB: 1oxk_B 1oxb_B
Probab=99.79 E-value=6.7e-19 Score=128.38 Aligned_cols=93 Identities=19% Similarity=0.438 Sum_probs=84.4
Q ss_pred Cc-EEEEECCHHHHHHHHHh-----CCCCceEEEEccCCCCCCHHHHHHHHhc--CCCCcEEEEeccCCHHHHHHHHhCC
Q 027234 2 GF-SVTKCNRAEIALDMLRT-----NKNGYDIVISDVHMPDMDGFKLLELVGL--EMDLPVIMMCAHGSKEVVMKGVTHD 73 (226)
Q Consensus 2 g~-~V~~~~~~~eal~~l~~-----~~~~~DlVl~D~~mp~~dG~~l~~~l~~--~~~~pvI~ls~~~~~~~~~~a~~~g 73 (226)
|| .|..+.++.+|++.+.. .. ||+||+|+.||+++|+++++.++. .+.+|||++|+..+.+...++++.|
T Consensus 26 g~~~v~~~~~~~~al~~~~~~~~~~~~--~dlvllD~~mp~~~G~~~~~~lr~~~~~~~~ii~lt~~~~~~~~~~~~~~g 103 (133)
T 2r25_B 26 GIENIELACDGQEAFDKVKELTSKGEN--YNMIFMDVQMPKVDGLLSTKMIRRDLGYTSPIVALTAFADDSNIKECLESG 103 (133)
T ss_dssp TCCCEEEESSHHHHHHHHHHHHHHTCC--CSEEEECSCCSSSCHHHHHHHHHHHSCCCSCEEEEESCCSHHHHHHHHHTT
T ss_pred CCceEEEECCHHHHHHHHHHHHhcCCC--CCEEEEeCCCCCCChHHHHHHHHhhcCCCCCEEEEECCCCHHHHHHHHHcC
Confidence 66 48889999999999986 55 999999999999999999999974 3578999999999999999999999
Q ss_pred cceEEeCCCCHHHHHHHHHHHHH
Q 027234 74 ACDYLTKPVRIEELKNIWQHVVR 96 (226)
Q Consensus 74 a~~yl~KP~~~~~L~~~l~~~~~ 96 (226)
|++||.||++.++|...+++++.
T Consensus 104 a~~~l~KP~~~~~L~~~l~~~~~ 126 (133)
T 2r25_B 104 MNGFLSKPIKRPKLKTILTEFCA 126 (133)
T ss_dssp CSEEEESSCCHHHHHHHHHHHCT
T ss_pred CCEEEeCCCCHHHHHHHHHHHHH
Confidence 99999999999999999988754
No 11
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=99.78 E-value=4.7e-18 Score=121.14 Aligned_cols=95 Identities=31% Similarity=0.435 Sum_probs=88.2
Q ss_pred CCcEEEEECCHHHHHHHHHhCCCCceEEEEccCCCCCCHHHHHHHHh-cCCCCcEEEEeccCCHHHHHHHHhCCcceEEe
Q 027234 1 MGFSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVG-LEMDLPVIMMCAHGSKEVVMKGVTHDACDYLT 79 (226)
Q Consensus 1 lg~~V~~~~~~~eal~~l~~~~~~~DlVl~D~~mp~~dG~~l~~~l~-~~~~~pvI~ls~~~~~~~~~~a~~~ga~~yl~ 79 (226)
.||.|..+.++.+|++.+.... ||+||+|+.||+++|+++++.++ ..+.+|+|++|+..+.....++++.|+++|+.
T Consensus 23 ~g~~v~~~~~~~~a~~~~~~~~--~dlil~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~ 100 (121)
T 2pl1_A 23 AGHQVDDAEDAKEADYYLNEHI--PDIAIVDLGLPDEDGLSLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVT 100 (121)
T ss_dssp TTCEEEEESSHHHHHHHHHHSC--CSEEEECSCCSSSCHHHHHHHHHHTTCCSCEEEEESCCCHHHHHHHHHTTCSEEEE
T ss_pred cCCEEEEeCCHHHHHHHHhccC--CCEEEEecCCCCCCHHHHHHHHHhcCCCCCEEEEecCCCHHHHHHHHHcCccceEE
Confidence 4799999999999999999876 99999999999999999999997 45689999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHH
Q 027234 80 KPVRIEELKNIWQHVVRK 97 (226)
Q Consensus 80 KP~~~~~L~~~l~~~~~~ 97 (226)
||++.++|...++++++.
T Consensus 101 kp~~~~~l~~~i~~~~~~ 118 (121)
T 2pl1_A 101 KPFHIEEVMARMQALMRR 118 (121)
T ss_dssp SSCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHh
Confidence 999999999999988754
No 12
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=99.78 E-value=2.1e-18 Score=134.93 Aligned_cols=97 Identities=23% Similarity=0.445 Sum_probs=89.1
Q ss_pred CCcEEEEECCHHHHHHHHHhCCCCceEEEEccCCCCCCHHHHHHHHh-cCCCCcEEEEeccCCHHHHHHHHhCCcceEEe
Q 027234 1 MGFSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVG-LEMDLPVIMMCAHGSKEVVMKGVTHDACDYLT 79 (226)
Q Consensus 1 lg~~V~~~~~~~eal~~l~~~~~~~DlVl~D~~mp~~dG~~l~~~l~-~~~~~pvI~ls~~~~~~~~~~a~~~ga~~yl~ 79 (226)
.||.|..+.++.+|++.+.... ||+||+|+.||+++|+++++.++ ..+.+|||++|+..+.+....+++.||++||.
T Consensus 27 ~g~~v~~~~~~~~al~~~~~~~--~dlvl~D~~lp~~~g~~~~~~l~~~~~~~~ii~ls~~~~~~~~~~a~~~Ga~~~l~ 104 (208)
T 1yio_A 27 AGFEVETFDCASTFLEHRRPEQ--HGCLVLDMRMPGMSGIELQEQLTAISDGIPIVFITAHGDIPMTVRAMKAGAIEFLP 104 (208)
T ss_dssp TTCEEEEESSHHHHHHHCCTTS--CEEEEEESCCSSSCHHHHHHHHHHTTCCCCEEEEESCTTSCCCHHHHHTTEEEEEE
T ss_pred CCceEEEcCCHHHHHHhhhccC--CCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEEEeCCCCHHHHHHHHHCCCcEEEe
Confidence 4799999999999999988765 99999999999999999999998 45789999999999988899999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHh
Q 027234 80 KPVRIEELKNIWQHVVRKRK 99 (226)
Q Consensus 80 KP~~~~~L~~~l~~~~~~~~ 99 (226)
||++.++|...+++++++..
T Consensus 105 Kp~~~~~L~~~i~~~~~~~~ 124 (208)
T 1yio_A 105 KPFEEQALLDAIEQGLQLNA 124 (208)
T ss_dssp SSCCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhhhh
Confidence 99999999999999887654
No 13
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=99.78 E-value=2.8e-18 Score=134.99 Aligned_cols=94 Identities=18% Similarity=0.360 Sum_probs=87.2
Q ss_pred CcEE-EEECCHHHHHHHHHhCCCCceEEEEccCCCCCCHHHHHHHHh-cCCCCcEEEEeccCCHHHHHHHHhCCcceEEe
Q 027234 2 GFSV-TKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVG-LEMDLPVIMMCAHGSKEVVMKGVTHDACDYLT 79 (226)
Q Consensus 2 g~~V-~~~~~~~eal~~l~~~~~~~DlVl~D~~mp~~dG~~l~~~l~-~~~~~pvI~ls~~~~~~~~~~a~~~ga~~yl~ 79 (226)
||.| ..+.++.+|++.+.... ||+||+|+.||+++|+++++.++ ..+.+|||++|+..+.+....++..||++||.
T Consensus 30 ~~~vv~~~~~~~~al~~~~~~~--~dlvllD~~lp~~~g~~~~~~lr~~~~~~~ii~ls~~~~~~~~~~~~~~Ga~~~l~ 107 (215)
T 1a04_A 30 DITVVGEASNGEQGIELAESLD--PDLILLDLNMPGMNGLETLDKLREKSLSGRIVVFSVSNHEEDVVTALKRGADGYLL 107 (215)
T ss_dssp TEEEEEEESSHHHHHHHHHHHC--CSEEEEETTSTTSCHHHHHHHHHHSCCCSEEEEEECCCCHHHHHHHHHTTCSEEEE
T ss_pred CcEEEEEeCCHHHHHHHHHhcC--CCEEEEeCCCCCCcHHHHHHHHHHhCCCCcEEEEECCCCHHHHHHHHHcCCcEEEe
Confidence 4777 68999999999998876 99999999999999999999998 45689999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHH
Q 027234 80 KPVRIEELKNIWQHVVRK 97 (226)
Q Consensus 80 KP~~~~~L~~~l~~~~~~ 97 (226)
||++.++|..+++.++++
T Consensus 108 Kp~~~~~L~~~i~~~~~~ 125 (215)
T 1a04_A 108 KDMEPEDLLKALHQAAAG 125 (215)
T ss_dssp TTCCHHHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHHcC
Confidence 999999999999998865
No 14
>3sy8_A ROCR; TIM barrel phosphodiesterase-A, transcription regulator; HET: EPE; 2.50A {Pseudomonas aeruginosa}
Probab=99.78 E-value=9e-21 Score=163.33 Aligned_cols=166 Identities=17% Similarity=0.231 Sum_probs=119.3
Q ss_pred CcEEEEECCHHHHHHHHHh-CCCCceEEEEccCCCCCCHHHHHHHHhc-CCCCcEEEEeccCCH-----HHHHHHHhCCc
Q 027234 2 GFSVTKCNRAEIALDMLRT-NKNGYDIVISDVHMPDMDGFKLLELVGL-EMDLPVIMMCAHGSK-----EVVMKGVTHDA 74 (226)
Q Consensus 2 g~~V~~~~~~~eal~~l~~-~~~~~DlVl~D~~mp~~dG~~l~~~l~~-~~~~pvI~ls~~~~~-----~~~~~a~~~ga 74 (226)
||.|.++.++.+|++.+.. .. ||+||+|+.||+|||+++++.++. .+.+|||++|+..+. ....+++..||
T Consensus 28 ~~~v~~a~~g~eal~~l~~~~~--~DlvllDi~mP~~dG~ell~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~~a~~~ga 105 (400)
T 3sy8_A 28 PGSILEAADGKEAVAILESCGH--VDIAICDLQMSGMDGLAFLRHASLSGKVHSVILSSEVDPILRQATISMIECLGLNF 105 (400)
T ss_dssp SEEEEEESSHHHHHHHHHHHSC--EEEEEECSSCSSSCHHHHHHHHHHHTCEEEEEESCCCCGGGHHHHHHHHHTTTCEE
T ss_pred CcEEEEecCHHHHHHHHhhCCC--CCEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEcCchHHHHHHHHHHHHHcCCee
Confidence 6889999999999999987 46 999999999999999999999984 455667777776665 66788999999
Q ss_pred ceEEeCCCCHHHHHHHHHHHHHHHhhhhhhhhhccCccCCCCCC---CCcccCC-CcccccCCCCCCccchHHHHHHhcc
Q 027234 75 CDYLTKPVRIEELKNIWQHVVRKRKNERKDLEQSGSVEGGAQQP---KPFEESD-DSYSVNEGTSNSRKDEEEEAEKRLK 150 (226)
Q Consensus 75 ~~yl~KP~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (226)
++||.||++.++|...+++++........... ........ ......+ ....++......+...+.|++.||.
T Consensus 106 ~~yl~KP~~~~~L~~~i~~~~~~~~~~~~~~~----~~~~~~~~~l~~al~~~~~~~~~QPiv~~~~~~~~g~EaL~R~~ 181 (400)
T 3sy8_A 106 LGDLGKPFSLERITALLTRYNARRQDLPRQIE----VAELPSVADVVRGLDNGEFEAYYQPKVALDGGGLIGAEVLARWN 181 (400)
T ss_dssp EEECCSSCCHHHHHHHHHHHHHHTTSCCCC-------CCCCCHHHHHHHHHTTCEEEEEEEEEESSSCCEEEEEEEEEEE
T ss_pred ccCcCCCcCHHHHHHHHHHHHHhhhhhhhhhh----hhcccHHHHHHHHHHCCcEEEEEeCeEEcCCCCEEEEEEEEEEe
Confidence 99999999999999999998765432111000 00000000 0000000 1223344455566677888899999
Q ss_pred CCceeeeHhhHHHHHHHHHHhCCCC
Q 027234 151 KPRLVWSVELHQQFVSAVKELGFDK 175 (226)
Q Consensus 151 ~~~~~~~~~l~~~Fi~~~~~~g~~~ 175 (226)
++..++ ..|..|++.+++.|+..
T Consensus 182 ~~~~~~--i~p~~fi~~ae~~~l~~ 204 (400)
T 3sy8_A 182 HPHLGV--LPPSHFLYVMETYNLVD 204 (400)
T ss_dssp ETTTEE--ECGGGTHHHHHHTTCHH
T ss_pred cCCCCE--ECHHHHHHHHHHCCCHH
Confidence 988775 56889999999998743
No 15
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=99.78 E-value=3.5e-18 Score=123.00 Aligned_cols=94 Identities=24% Similarity=0.484 Sum_probs=87.1
Q ss_pred CCcEEEEECCHHHHHHHHHhCCCCceEEEEccCCCCCCHHHHHHHHhc-CCCCcEEEEeccCCHHHHHHHHhCCcceEEe
Q 027234 1 MGFSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVGL-EMDLPVIMMCAHGSKEVVMKGVTHDACDYLT 79 (226)
Q Consensus 1 lg~~V~~~~~~~eal~~l~~~~~~~DlVl~D~~mp~~dG~~l~~~l~~-~~~~pvI~ls~~~~~~~~~~a~~~ga~~yl~ 79 (226)
.||.|..+.++.++++.+.... ||+||+|+.||+++|+++++.++. .+.+|+|++|+..+.+...++++.|+++||.
T Consensus 26 ~~~~v~~~~~~~~~~~~~~~~~--~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~ 103 (126)
T 1dbw_A 26 NGFAVKMHQSAEAFLAFAPDVR--NGVLVTDLRMPDMSGVELLRNLGDLKINIPSIVITGHGDVPMAVEAMKAGAVDFIE 103 (126)
T ss_dssp TTCEEEEESCHHHHHHHGGGCC--SEEEEEECCSTTSCHHHHHHHHHHTTCCCCEEEEECTTCHHHHHHHHHTTCSEEEE
T ss_pred CCcEEEEeCCHHHHHHHHhcCC--CCEEEEECCCCCCCHHHHHHHHHhcCCCCCEEEEECCCCHHHHHHHHHhCHHHhee
Confidence 3789999999999999998766 999999999999999999999974 5789999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHH
Q 027234 80 KPVRIEELKNIWQHVVR 96 (226)
Q Consensus 80 KP~~~~~L~~~l~~~~~ 96 (226)
||++.++|...++++++
T Consensus 104 Kp~~~~~l~~~i~~~~~ 120 (126)
T 1dbw_A 104 KPFEDTVIIEAIERASE 120 (126)
T ss_dssp SSCCHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 99999999999998764
No 16
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=99.78 E-value=5.8e-18 Score=120.97 Aligned_cols=95 Identities=19% Similarity=0.394 Sum_probs=88.5
Q ss_pred CCcEEEEECCHHHHHHHHHhCCCCceEEEEccCCCCCCHHHHHHHHhcCCCCcEEEEeccCCHHHHHHHHhCCcceEEeC
Q 027234 1 MGFSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVGLEMDLPVIMMCAHGSKEVVMKGVTHDACDYLTK 80 (226)
Q Consensus 1 lg~~V~~~~~~~eal~~l~~~~~~~DlVl~D~~mp~~dG~~l~~~l~~~~~~pvI~ls~~~~~~~~~~a~~~ga~~yl~K 80 (226)
.||.|..+.++.++++.+.... ||+||+|+.||+++|+++++.++..+.+|+|++|+..+......+++.|+++|+.|
T Consensus 25 ~~~~v~~~~~~~~~~~~~~~~~--~dlvi~d~~l~~~~g~~~~~~l~~~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~K 102 (122)
T 1zgz_A 25 EGYTVSVTASGAGLREIMQNQS--VDLILLDINLPDENGLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTK 102 (122)
T ss_dssp TTCEEEEESSHHHHHHHHHHSC--CSEEEEESCCSSSCHHHHHHHHHTTCCCEEEEEESSCCHHHHHHHHHHTCSEEEES
T ss_pred CCCeEEEecCHHHHHHHHhcCC--CCEEEEeCCCCCCChHHHHHHHHhcCCCCEEEEECCCChhhHHHHHHhCHHHHccC
Confidence 3789999999999999998866 99999999999999999999998777899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHH
Q 027234 81 PVRIEELKNIWQHVVRK 97 (226)
Q Consensus 81 P~~~~~L~~~l~~~~~~ 97 (226)
|++.++|...++++++.
T Consensus 103 p~~~~~l~~~i~~~~~~ 119 (122)
T 1zgz_A 103 PLELRELVVRVKNLLWR 119 (122)
T ss_dssp SCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 99999999999988754
No 17
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.78 E-value=6.3e-18 Score=123.78 Aligned_cols=98 Identities=23% Similarity=0.448 Sum_probs=89.9
Q ss_pred CCcEEEEECCHHHHHHHHHhCCCCceEEEEccCCCCCCHHHHHHHHhc-CCCCcEEEEeccCCHHHHHHHHhCCcceEEe
Q 027234 1 MGFSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVGL-EMDLPVIMMCAHGSKEVVMKGVTHDACDYLT 79 (226)
Q Consensus 1 lg~~V~~~~~~~eal~~l~~~~~~~DlVl~D~~mp~~dG~~l~~~l~~-~~~~pvI~ls~~~~~~~~~~a~~~ga~~yl~ 79 (226)
.||.|..+.++.+|++.+.... ||+||+|+.||+++|+++++.++. .+.+|+|++|+..+.+....+++.|+++||.
T Consensus 27 ~g~~v~~~~~~~~a~~~l~~~~--~dlvllD~~l~~~~g~~l~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~~ga~~~l~ 104 (137)
T 3cfy_A 27 EPYDIFHVETGRDAIQFIERSK--PQLIILDLKLPDMSGEDVLDWINQNDIPTSVIIATAHGSVDLAVNLIQKGAEDFLE 104 (137)
T ss_dssp SSSEEEEESSHHHHHHHHHHHC--CSEEEECSBCSSSBHHHHHHHHHHTTCCCEEEEEESSCCHHHHHHHHHTTCSEEEE
T ss_pred cCceEEEeCCHHHHHHHHHhcC--CCEEEEecCCCCCCHHHHHHHHHhcCCCCCEEEEEecCcHHHHHHHHHCCccEEEe
Confidence 3799999999999999998876 999999999999999999999984 5789999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhh
Q 027234 80 KPVRIEELKNIWQHVVRKRKN 100 (226)
Q Consensus 80 KP~~~~~L~~~l~~~~~~~~~ 100 (226)
||++.++|...++++++....
T Consensus 105 KP~~~~~L~~~i~~~~~~~~~ 125 (137)
T 3cfy_A 105 KPINADRLKTSVALHLKRAKL 125 (137)
T ss_dssp SSCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999998875443
No 18
>3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides} PDB: 3t0y_A
Probab=99.78 E-value=1.6e-19 Score=148.91 Aligned_cols=95 Identities=22% Similarity=0.327 Sum_probs=86.2
Q ss_pred CCcEEE-EECCHHHHHHHHHhCCCCceEEEEccCCC-CCCHHHHHHHHhcCCCCcEEEEeccCCHHHHHHHHhCCcceEE
Q 027234 1 MGFSVT-KCNRAEIALDMLRTNKNGYDIVISDVHMP-DMDGFKLLELVGLEMDLPVIMMCAHGSKEVVMKGVTHDACDYL 78 (226)
Q Consensus 1 lg~~V~-~~~~~~eal~~l~~~~~~~DlVl~D~~mp-~~dG~~l~~~l~~~~~~pvI~ls~~~~~~~~~~a~~~ga~~yl 78 (226)
+||.|. +|.||.+|++.+.... ||+||+|+.|| +|||+++++.|+..+++|||++|+.. +...+++..|+++||
T Consensus 183 ~g~~v~~~a~~g~eAl~~~~~~~--~dlvl~D~~MPd~mdG~e~~~~ir~~~~~piI~lT~~~--~~~~~~~~~G~~~~l 258 (286)
T 3n0r_A 183 LGHDVTDIAATRGEALEAVTRRT--PGLVLADIQLADGSSGIDAVKDILGRMDVPVIFITAFP--ERLLTGERPEPTFLI 258 (286)
T ss_dssp TTCEEEEEESSHHHHHHHHHHCC--CSEEEEESCCTTSCCTTTTTHHHHHHTTCCEEEEESCG--GGGCCSSSCCCSSEE
T ss_pred cCceEEEEeCCHHHHHHHHHhCC--CCEEEEcCCCCCCCCHHHHHHHHHhcCCCCEEEEeCCH--HHHHHHHhCCCcEEE
Confidence 489999 9999999999999876 99999999999 89999999999855599999999985 356779999999999
Q ss_pred eCCCCHHHHHHHHHHHHHHHh
Q 027234 79 TKPVRIEELKNIWQHVVRKRK 99 (226)
Q Consensus 79 ~KP~~~~~L~~~l~~~~~~~~ 99 (226)
.||++.++|...+.+++....
T Consensus 259 ~KP~~~~~L~~~i~~~l~~~~ 279 (286)
T 3n0r_A 259 TKPFQPETVKAAIGQALFFHP 279 (286)
T ss_dssp ESSCCHHHHHHHHHHHHHHSC
T ss_pred eCCCCHHHHHHHHHHHHHhCC
Confidence 999999999999999987543
No 19
>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A
Probab=99.78 E-value=4.7e-18 Score=121.63 Aligned_cols=95 Identities=19% Similarity=0.355 Sum_probs=88.2
Q ss_pred CCcEEEEECCHHHHHHHHHhCCCCceEEEEccCCCCCCHHHHHHHHhcCCCCcEEEEeccCCHHHHHHHHhCCcceEEeC
Q 027234 1 MGFSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVGLEMDLPVIMMCAHGSKEVVMKGVTHDACDYLTK 80 (226)
Q Consensus 1 lg~~V~~~~~~~eal~~l~~~~~~~DlVl~D~~mp~~dG~~l~~~l~~~~~~pvI~ls~~~~~~~~~~a~~~ga~~yl~K 80 (226)
.||.|..+.++.+|++.+.... ||+||+|+.||+++|+++++.++..+.+|+|++|+..+......+++.|+++||.|
T Consensus 26 ~~~~v~~~~~~~~a~~~~~~~~--~dlvi~D~~l~~~~g~~~~~~l~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~K 103 (123)
T 1xhf_A 26 EGYDVFEATDGAEMHQILSEYD--INLVIMDINLPGKNGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITK 103 (123)
T ss_dssp TTCEEEEESSHHHHHHHHHHSC--CSEEEECSSCSSSCHHHHHHHHHHHCCCEEEEEESCCSHHHHHHHHHHTCSEEEES
T ss_pred CCcEEEEeCCHHHHHHHHhcCC--CCEEEEcCCCCCCCHHHHHHHHHhCCCCcEEEEECCCChHHHHHHHhcCcceEEeC
Confidence 3799999999999999998866 99999999999999999999998557899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHH
Q 027234 81 PVRIEELKNIWQHVVRK 97 (226)
Q Consensus 81 P~~~~~L~~~l~~~~~~ 97 (226)
|++.++|...++++++.
T Consensus 104 P~~~~~l~~~i~~~~~~ 120 (123)
T 1xhf_A 104 PFNPRELTIRARNLLSR 120 (123)
T ss_dssp SCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 99999999999988754
No 20
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*
Probab=99.77 E-value=3.9e-18 Score=121.26 Aligned_cols=94 Identities=27% Similarity=0.468 Sum_probs=87.6
Q ss_pred CCcEEEEECCHHHHHHHHHhCCCCceEEEEccCCCCCCHHHHHHHHhcCCCCcEEEEeccCCHHHHHHHHhCCcceEEeC
Q 027234 1 MGFSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVGLEMDLPVIMMCAHGSKEVVMKGVTHDACDYLTK 80 (226)
Q Consensus 1 lg~~V~~~~~~~eal~~l~~~~~~~DlVl~D~~mp~~dG~~l~~~l~~~~~~pvI~ls~~~~~~~~~~a~~~ga~~yl~K 80 (226)
.||.|..+.++.+|++.+.... ||+||+|+.||+++|+++++.++..+.+|+|++|+..+......+++.|+++||.|
T Consensus 24 ~~~~v~~~~~~~~a~~~~~~~~--~dlvl~D~~l~~~~g~~~~~~l~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~K 101 (120)
T 2a9o_A 24 EGYEVVTAFNGREALEQFEAEQ--PDIIILDLMLPEIDGLEVAKTIRKTSSVPILMLSAKDSEFDKVIGLELGADDYVTK 101 (120)
T ss_dssp TTCEEEEESSHHHHHHHHHHHC--CSEEEECSSCSSSCHHHHHHHHHHHCCCCEEEEESCCSHHHHHHHHHHTCSEEEES
T ss_pred cCcEEEEecCHHHHHHHHHhCC--CCEEEEeccCCCCCHHHHHHHHHhCCCCCEEEEecCCchHHHHHHHhCCHhheEeC
Confidence 3799999999999999998866 99999999999999999999998667899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHH
Q 027234 81 PVRIEELKNIWQHVVR 96 (226)
Q Consensus 81 P~~~~~L~~~l~~~~~ 96 (226)
|++.++|...++++++
T Consensus 102 p~~~~~l~~~i~~~~~ 117 (120)
T 2a9o_A 102 PFSNRELQARVKALLR 117 (120)
T ss_dssp SCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHc
Confidence 9999999999988765
No 21
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=99.77 E-value=7.2e-18 Score=125.61 Aligned_cols=101 Identities=25% Similarity=0.407 Sum_probs=92.9
Q ss_pred CCcEEEEECCHHHHHHHHHhCCCCceEEEEccCCCCCCHHHHHHHHh-cCCCCcEEEEeccCCHHHHHHHHhCC-cceEE
Q 027234 1 MGFSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVG-LEMDLPVIMMCAHGSKEVVMKGVTHD-ACDYL 78 (226)
Q Consensus 1 lg~~V~~~~~~~eal~~l~~~~~~~DlVl~D~~mp~~dG~~l~~~l~-~~~~~pvI~ls~~~~~~~~~~a~~~g-a~~yl 78 (226)
.||.|..+.++.+|++.+.... ||+||+|+.||+++|+++++.++ ..+.+|||++|+..+.+...+++..| +++||
T Consensus 37 ~g~~v~~~~~~~~a~~~l~~~~--~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~~l 114 (153)
T 3hv2_A 37 LPYTLHFARDATQALQLLASRE--VDLVISAAHLPQMDGPTLLARIHQQYPSTTRILLTGDPDLKLIAKAINEGEIYRYL 114 (153)
T ss_dssp SSCEEEEESSHHHHHHHHHHSC--CSEEEEESCCSSSCHHHHHHHHHHHCTTSEEEEECCCCCHHHHHHHHHTTCCSEEE
T ss_pred cCcEEEEECCHHHHHHHHHcCC--CCEEEEeCCCCcCcHHHHHHHHHhHCCCCeEEEEECCCCHHHHHHHHhCCCcceEE
Confidence 3799999999999999999876 99999999999999999999997 45789999999999999999999999 99999
Q ss_pred eCCCCHHHHHHHHHHHHHHHhhhhh
Q 027234 79 TKPVRIEELKNIWQHVVRKRKNERK 103 (226)
Q Consensus 79 ~KP~~~~~L~~~l~~~~~~~~~~~~ 103 (226)
.||++.++|..+++++++.....+.
T Consensus 115 ~KP~~~~~l~~~i~~~l~~~~~~~~ 139 (153)
T 3hv2_A 115 SKPWDDQELLLALRQALEHQHSERE 139 (153)
T ss_dssp CSSCCHHHHHHHHHHHHHHHHHHHT
T ss_pred eCCCCHHHHHHHHHHHHHHhHHHhh
Confidence 9999999999999999887665443
No 22
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=99.77 E-value=3.9e-18 Score=127.39 Aligned_cols=98 Identities=26% Similarity=0.435 Sum_probs=90.7
Q ss_pred CCcEEEEECCHHHHHHHHHhCCCCceEEEEccCCCCCCHHHHHHHHhcC---CCCcEEEEeccCCHHHHHHHHhCCcceE
Q 027234 1 MGFSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVGLE---MDLPVIMMCAHGSKEVVMKGVTHDACDY 77 (226)
Q Consensus 1 lg~~V~~~~~~~eal~~l~~~~~~~DlVl~D~~mp~~dG~~l~~~l~~~---~~~pvI~ls~~~~~~~~~~a~~~ga~~y 77 (226)
.||.|..+.++.+|++.+.... ||+||+|+.||+++|+++++.++.. +.+|||++|+..+.+...+++..|+++|
T Consensus 30 ~g~~v~~~~~~~~al~~l~~~~--~dlii~D~~l~~~~g~~~~~~lr~~~~~~~~pii~~s~~~~~~~~~~~~~~g~~~~ 107 (154)
T 3gt7_A 30 TGYQTEHVRNGREAVRFLSLTR--PDLIISDVLMPEMDGYALCRWLKGQPDLRTIPVILLTILSDPRDVVRSLECGADDF 107 (154)
T ss_dssp TTCEEEEESSHHHHHHHHTTCC--CSEEEEESCCSSSCHHHHHHHHHHSTTTTTSCEEEEECCCSHHHHHHHHHHCCSEE
T ss_pred CCCEEEEeCCHHHHHHHHHhCC--CCEEEEeCCCCCCCHHHHHHHHHhCCCcCCCCEEEEECCCChHHHHHHHHCCCCEE
Confidence 4899999999999999998866 9999999999999999999999854 6799999999999999999999999999
Q ss_pred EeCCCCHHHHHHHHHHHHHHHhh
Q 027234 78 LTKPVRIEELKNIWQHVVRKRKN 100 (226)
Q Consensus 78 l~KP~~~~~L~~~l~~~~~~~~~ 100 (226)
|.||++.++|...+++++.+...
T Consensus 108 l~KP~~~~~l~~~i~~~l~~~~~ 130 (154)
T 3gt7_A 108 ITKPCKDVVLASHVKRLLSGVKR 130 (154)
T ss_dssp EESSCCHHHHHHHHHHHHHHTCC
T ss_pred EeCCCCHHHHHHHHHHHHHHHHh
Confidence 99999999999999999876544
No 23
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=99.77 E-value=4.7e-18 Score=124.30 Aligned_cols=97 Identities=23% Similarity=0.421 Sum_probs=89.3
Q ss_pred CCcEEEEECCHHHHHHHHHhCCCCceEEEEccCCCCCCHHHHHHHHhcCCCCcEEEEeccCCHHHHHHHHhCCcceEEeC
Q 027234 1 MGFSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVGLEMDLPVIMMCAHGSKEVVMKGVTHDACDYLTK 80 (226)
Q Consensus 1 lg~~V~~~~~~~eal~~l~~~~~~~DlVl~D~~mp~~dG~~l~~~l~~~~~~pvI~ls~~~~~~~~~~a~~~ga~~yl~K 80 (226)
.||.|..+.++.+|++.+.... ||+||+|+.||+++|+++++.++....+|+|++|+..+.+....+++.|+++||.|
T Consensus 27 ~g~~v~~~~~~~~al~~~~~~~--~dlvllD~~l~~~~g~~l~~~l~~~~~~~ii~ls~~~~~~~~~~~~~~ga~~~l~K 104 (136)
T 2qzj_A 27 KGISIDLAYNCEEAIGKIFSNK--YDLIFLEIILSDGDGWTLCKKIRNVTTCPIVYMTYINEDQSILNALNSGGDDYLIK 104 (136)
T ss_dssp TTCEEEEESSHHHHHHHHHHCC--CSEEEEESEETTEEHHHHHHHHHTTCCCCEEEEESCCCHHHHHHHHHTTCCEEEES
T ss_pred CCCEEEEECCHHHHHHHHHhcC--CCEEEEeCCCCCCCHHHHHHHHccCCCCCEEEEEcCCCHHHHHHHHHcCCcEEEEC
Confidence 3789999999999999998866 99999999999999999999998655899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHh
Q 027234 81 PVRIEELKNIWQHVVRKRK 99 (226)
Q Consensus 81 P~~~~~L~~~l~~~~~~~~ 99 (226)
|++.++|...+++++++..
T Consensus 105 P~~~~~L~~~l~~~~~~~~ 123 (136)
T 2qzj_A 105 PLNLEILYAKVKAILRRMN 123 (136)
T ss_dssp SCCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhh
Confidence 9999999999999876543
No 24
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=99.77 E-value=4.4e-18 Score=125.62 Aligned_cols=95 Identities=29% Similarity=0.448 Sum_probs=84.5
Q ss_pred CCcEEEEECCHHHHHHHHHhCCCCceEEEEccCCCCCCHHHHHHHHhc-----CCCCcEEEEeccCCHHHHHHHHhCCcc
Q 027234 1 MGFSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVGL-----EMDLPVIMMCAHGSKEVVMKGVTHDAC 75 (226)
Q Consensus 1 lg~~V~~~~~~~eal~~l~~~~~~~DlVl~D~~mp~~dG~~l~~~l~~-----~~~~pvI~ls~~~~~~~~~~a~~~ga~ 75 (226)
.||.|..+.++.+|++.+.... ||+||+|+.||+++|+++++.++. .+.+|+|++|+..+.+....+++.||+
T Consensus 37 ~g~~v~~~~~~~~al~~~~~~~--~dlvl~D~~mp~~~g~~~~~~lr~~~~~~~~~~pii~~s~~~~~~~~~~~~~~Ga~ 114 (143)
T 3m6m_D 37 AGHKVLCVNGAEQVLDAMAEED--YDAVIVDLHMPGMNGLDMLKQLRVMQASGMRYTPVVVLSADVTPEAIRACEQAGAR 114 (143)
T ss_dssp --CEEEEESSHHHHHHHHHHSC--CSEEEEESCCSSSCHHHHHHHHHHHHHTTCCCCCEEEEESCCCHHHHHHHHHTTCS
T ss_pred cCCeEEEeCCHHHHHHHHhcCC--CCEEEEeCCCCCCCHHHHHHHHHhchhccCCCCeEEEEeCCCCHHHHHHHHHcChh
Confidence 3789999999999999998866 999999999999999999999862 246899999999999999999999999
Q ss_pred eEEeCCCCHHHHHHHHHHHHHH
Q 027234 76 DYLTKPVRIEELKNIWQHVVRK 97 (226)
Q Consensus 76 ~yl~KP~~~~~L~~~l~~~~~~ 97 (226)
+||.||++.++|...+.++...
T Consensus 115 ~~l~KP~~~~~L~~~l~~~~~~ 136 (143)
T 3m6m_D 115 AFLAKPVVAAKLLDTLADLAVS 136 (143)
T ss_dssp EEEESSCCHHHHHHHHHHHC--
T ss_pred heeeCCCCHHHHHHHHHHHHHh
Confidence 9999999999999999887644
No 25
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=99.77 E-value=3.3e-18 Score=122.73 Aligned_cols=94 Identities=23% Similarity=0.469 Sum_probs=86.9
Q ss_pred CCcEEEEECCHHHHHHHHHhCCCCceEEEEccCCCCCCHHHHHHHHhc-CCCCcEEEEeccCCHHHHHHHHhCCcceEEe
Q 027234 1 MGFSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVGL-EMDLPVIMMCAHGSKEVVMKGVTHDACDYLT 79 (226)
Q Consensus 1 lg~~V~~~~~~~eal~~l~~~~~~~DlVl~D~~mp~~dG~~l~~~l~~-~~~~pvI~ls~~~~~~~~~~a~~~ga~~yl~ 79 (226)
.||.|..+.++.+|++.+.... ||+||+|+.||+++|+++++.++. .+.+|+|++|+..+.+...++++.|+++||.
T Consensus 26 ~~~~v~~~~~~~~a~~~~~~~~--~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~ 103 (124)
T 1srr_A 26 EGYQTFQAANGLQALDIVTKER--PDLVLLDMKIPGMDGIEILKRMKVIDENIRVIIMTAYGELDMIQESKELGALTHFA 103 (124)
T ss_dssp TTCEEEEESSHHHHHHHHHHHC--CSEEEEESCCTTCCHHHHHHHHHHHCTTCEEEEEESSCCHHHHHHHHHHTCCCEEE
T ss_pred CCcEEEEeCCHHHHHHHHhccC--CCEEEEecCCCCCCHHHHHHHHHHhCCCCCEEEEEccCchHHHHHHHhcChHhhcc
Confidence 3799999999999999998866 999999999999999999999974 5789999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHH
Q 027234 80 KPVRIEELKNIWQHVVR 96 (226)
Q Consensus 80 KP~~~~~L~~~l~~~~~ 96 (226)
||++.++|...++++++
T Consensus 104 KP~~~~~l~~~i~~~~~ 120 (124)
T 1srr_A 104 KPFDIDEIRDAVKKYLP 120 (124)
T ss_dssp SSCCHHHHHHHHHHHSC
T ss_pred CCCCHHHHHHHHHHHhc
Confidence 99999999999988753
No 26
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=99.77 E-value=7.6e-18 Score=121.92 Aligned_cols=95 Identities=27% Similarity=0.525 Sum_probs=85.4
Q ss_pred CCcE-EEEECCHHHHHHHHHhCCCCceEEEEccCCCCCCHHHHHHHHhcC---CCCcEEEEeccCCHHHHHHHHhCCcce
Q 027234 1 MGFS-VTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVGLE---MDLPVIMMCAHGSKEVVMKGVTHDACD 76 (226)
Q Consensus 1 lg~~-V~~~~~~~eal~~l~~~~~~~DlVl~D~~mp~~dG~~l~~~l~~~---~~~pvI~ls~~~~~~~~~~a~~~ga~~ 76 (226)
.||. |..+.++.+|++.+... ..||+||+|+.||+++|+++++.++.. +.+|||++|+..+.....++++.||++
T Consensus 28 ~g~~~v~~~~~~~~a~~~~~~~-~~~dlvi~D~~~p~~~g~~~~~~lr~~~~~~~~pii~~s~~~~~~~~~~~~~~g~~~ 106 (129)
T 3h1g_A 28 LGYEDVLEAEHGVEAWEKLDAN-ADTKVLITDWNMPEMNGLDLVKKVRSDSRFKEIPIIMITAEGGKAEVITALKAGVNN 106 (129)
T ss_dssp TTCCCEEEESSHHHHHHHHHHC-TTCCEEEECSCCSSSCHHHHHHHHHTSTTCTTCCEEEEESCCSHHHHHHHHHHTCCE
T ss_pred cCCcEEEEeCCHHHHHHHHHhC-CCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeEEEEeCCCChHHHHHHHHcCccE
Confidence 3775 88999999999988764 239999999999999999999999743 578999999999999999999999999
Q ss_pred EEeCCCCHHHHHHHHHHHHH
Q 027234 77 YLTKPVRIEELKNIWQHVVR 96 (226)
Q Consensus 77 yl~KP~~~~~L~~~l~~~~~ 96 (226)
||.||++.++|...++.++.
T Consensus 107 ~l~KP~~~~~L~~~l~~~l~ 126 (129)
T 3h1g_A 107 YIVKPFTPQVLKEKLEVVLG 126 (129)
T ss_dssp EEESCCCHHHHHHHHHHHHC
T ss_pred EEeCCCCHHHHHHHHHHHhc
Confidence 99999999999999998864
No 27
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=99.76 E-value=1.8e-17 Score=121.71 Aligned_cols=102 Identities=25% Similarity=0.457 Sum_probs=91.8
Q ss_pred CCcEEEEECCHHHHHHHHHhCCCCceEEEEccCCCCCCHHHHHHHHh-cCCCCcEEEEeccCCHHHHHHHHhCCcceEEe
Q 027234 1 MGFSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVG-LEMDLPVIMMCAHGSKEVVMKGVTHDACDYLT 79 (226)
Q Consensus 1 lg~~V~~~~~~~eal~~l~~~~~~~DlVl~D~~mp~~dG~~l~~~l~-~~~~~pvI~ls~~~~~~~~~~a~~~ga~~yl~ 79 (226)
.||.|..+.++.+|++.+......||+||+|+.||+++|+++++.++ ..+.+|||++|+..+.+...+++..|+++||.
T Consensus 26 ~g~~v~~~~~~~~a~~~~~~~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~ 105 (143)
T 3jte_A 26 DGNEVLTASSSTEGLRIFTENCNSIDVVITDMKMPKLSGMDILREIKKITPHMAVIILTGHGDLDNAILAMKEGAFEYLR 105 (143)
T ss_dssp TTCEEEEESSHHHHHHHHHHTTTTCCEEEEESCCSSSCHHHHHHHHHHHCTTCEEEEEECTTCHHHHHHHHHTTCSEEEE
T ss_pred CCceEEEeCCHHHHHHHHHhCCCCCCEEEEeCCCCCCcHHHHHHHHHHhCCCCeEEEEECCCCHHHHHHHHHhCcceeEe
Confidence 47999999999999999984223499999999999999999999997 55789999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhhhh
Q 027234 80 KPVRIEELKNIWQHVVRKRKNER 102 (226)
Q Consensus 80 KP~~~~~L~~~l~~~~~~~~~~~ 102 (226)
||++.++|..++++++++....+
T Consensus 106 kp~~~~~l~~~l~~~~~~~~~~~ 128 (143)
T 3jte_A 106 KPVTAQDLSIAINNAINRKKLLM 128 (143)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998766544
No 28
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=99.76 E-value=1e-17 Score=135.03 Aligned_cols=97 Identities=34% Similarity=0.528 Sum_probs=90.3
Q ss_pred CCcEEEEECCHHHHHHHHHhCCCCceEEEEccCCCCCCHHHHHHHHhc-CCCCcEEEEeccCCHHHHHHHHhCCcceEEe
Q 027234 1 MGFSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVGL-EMDLPVIMMCAHGSKEVVMKGVTHDACDYLT 79 (226)
Q Consensus 1 lg~~V~~~~~~~eal~~l~~~~~~~DlVl~D~~mp~~dG~~l~~~l~~-~~~~pvI~ls~~~~~~~~~~a~~~ga~~yl~ 79 (226)
.||+|..+.++.+|++.+.... ||+||+|+.||++||+++++.++. .+.+|||++|+..+.+....+++.||++||.
T Consensus 46 ~g~~v~~~~~~~~al~~~~~~~--~dlvllD~~lp~~~g~~~~~~lr~~~~~~~ii~lt~~~~~~~~~~~~~~Ga~~yl~ 123 (250)
T 3r0j_A 46 QGFEVYTATNGAQALDRARETR--PDAVILDVXMPGMDGFGVLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVT 123 (250)
T ss_dssp TTCEEEEESSHHHHHHHHHHHC--CSEEEEESCCSSSCHHHHHHHHHHTTCCCCEEEEECSTTHHHHHHHHTSTTCEEEE
T ss_pred CCCEEEEECCHHHHHHHHHhCC--CCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEEEECCCCHHHHHHHHHcCCcEEEe
Confidence 4799999999999999999876 999999999999999999999984 5789999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHh
Q 027234 80 KPVRIEELKNIWQHVVRKRK 99 (226)
Q Consensus 80 KP~~~~~L~~~l~~~~~~~~ 99 (226)
||++.++|..+++.++++..
T Consensus 124 Kp~~~~~L~~~i~~~~~~~~ 143 (250)
T 3r0j_A 124 KPFSLEEVVARLRVILRRAG 143 (250)
T ss_dssp SSCCHHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHhhc
Confidence 99999999999999987643
No 29
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus}
Probab=99.76 E-value=1e-17 Score=121.80 Aligned_cols=94 Identities=22% Similarity=0.338 Sum_probs=85.2
Q ss_pred cEEEEECCHHHHHHHHHhCCCCceEEEEccCCCCCCHHHHHHHHh-cCCCCcEEEEeccCCHHHHHHHHhCCcceEEeCC
Q 027234 3 FSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVG-LEMDLPVIMMCAHGSKEVVMKGVTHDACDYLTKP 81 (226)
Q Consensus 3 ~~V~~~~~~~eal~~l~~~~~~~DlVl~D~~mp~~dG~~l~~~l~-~~~~~pvI~ls~~~~~~~~~~a~~~ga~~yl~KP 81 (226)
+.|..+.++.+|++.+.... ||+||+|+.||+++|+++++.++ ..+.+|||++|+..+.+...++++.|+++||.||
T Consensus 30 ~~v~~~~~~~~al~~~~~~~--~dlvilD~~lp~~~g~~~~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~~ga~~~l~Kp 107 (133)
T 3b2n_A 30 EILADTDNGLDAMKLIEEYN--PNVVILDIEMPGMTGLEVLAEIRKKHLNIKVIIVTTFKRPGYFEKAVVNDVDAYVLKE 107 (133)
T ss_dssp EEEEEESCHHHHHHHHHHHC--CSEEEECSSCSSSCHHHHHHHHHHTTCSCEEEEEESCCCHHHHHHHHHTTCSEEEETT
T ss_pred EEEEEcCCHHHHHHHHhhcC--CCEEEEecCCCCCCHHHHHHHHHHHCCCCcEEEEecCCCHHHHHHHHHcCCcEEEECC
Confidence 45678999999999998866 99999999999999999999997 4578999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHH
Q 027234 82 VRIEELKNIWQHVVRKR 98 (226)
Q Consensus 82 ~~~~~L~~~l~~~~~~~ 98 (226)
++.++|...+++++++.
T Consensus 108 ~~~~~L~~~i~~~~~~~ 124 (133)
T 3b2n_A 108 RSIEELVETINKVNNGE 124 (133)
T ss_dssp SCHHHHHHHHHHHHC--
T ss_pred CCHHHHHHHHHHHHcCC
Confidence 99999999999887543
No 30
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=99.76 E-value=8e-18 Score=119.86 Aligned_cols=93 Identities=22% Similarity=0.434 Sum_probs=85.1
Q ss_pred CCcE-EEEECCHHHHHHHHHhCCCCceEEEEccCCCCCCHHHHHHHHh-cCCCCcEEEEeccCCHHHHHHHHhCCcceEE
Q 027234 1 MGFS-VTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVG-LEMDLPVIMMCAHGSKEVVMKGVTHDACDYL 78 (226)
Q Consensus 1 lg~~-V~~~~~~~eal~~l~~~~~~~DlVl~D~~mp~~dG~~l~~~l~-~~~~~pvI~ls~~~~~~~~~~a~~~ga~~yl 78 (226)
.||+ +..+.++.+|++.+.... ||+||+|+.||+++|+++++.++ ..+.+|+|++|+..+.+...++++.|+++|+
T Consensus 25 ~g~~vv~~~~~~~~a~~~~~~~~--~dlil~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l 102 (120)
T 1tmy_A 25 AGYEVAGEATNGREAVEKYKELK--PDIVTMDITMPEMNGIDAIKEIMKIDPNAKIIVCSAMGQQAMVIEAIKAGAKDFI 102 (120)
T ss_dssp TTCEEEEEESSHHHHHHHHHHHC--CSEEEEECSCGGGCHHHHHHHHHHHCTTCCEEEEECTTCHHHHHHHHHTTCCEEE
T ss_pred cCcEEEEEECCHHHHHHHHHhcC--CCEEEEeCCCCCCcHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHhCcceeE
Confidence 3788 568999999999998876 99999999999999999999997 4578999999999999999999999999999
Q ss_pred eCCCCHHHHHHHHHHHH
Q 027234 79 TKPVRIEELKNIWQHVV 95 (226)
Q Consensus 79 ~KP~~~~~L~~~l~~~~ 95 (226)
.||++.++|...+++++
T Consensus 103 ~KP~~~~~l~~~i~~~~ 119 (120)
T 1tmy_A 103 VKPFQPSRVVEALNKVS 119 (120)
T ss_dssp ESSCCHHHHHHHHHHHC
T ss_pred eCCCCHHHHHHHHHHHh
Confidence 99999999999988753
No 31
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=99.76 E-value=3.2e-18 Score=125.06 Aligned_cols=98 Identities=20% Similarity=0.298 Sum_probs=90.4
Q ss_pred CCcEEEEECCHHHHHHHHHhCCCCceEEEEccCCCC--CCHHHHHHHHh-cCCCCcEEEEeccCCHHHHHHHHhCCcceE
Q 027234 1 MGFSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPD--MDGFKLLELVG-LEMDLPVIMMCAHGSKEVVMKGVTHDACDY 77 (226)
Q Consensus 1 lg~~V~~~~~~~eal~~l~~~~~~~DlVl~D~~mp~--~dG~~l~~~l~-~~~~~pvI~ls~~~~~~~~~~a~~~ga~~y 77 (226)
.||+|..+.++.+|++.+.+.. ||+||+|+.||+ ++|+++++.++ ..+.+|||++|+..+.+...+++..|+++|
T Consensus 29 ~g~~v~~~~~~~~a~~~l~~~~--~dlvi~D~~l~~~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~ga~~~ 106 (136)
T 3kto_A 29 LDVTIQCFASAESFMRQQISDD--AIGMIIEAHLEDKKDSGIELLETLVKRGFHLPTIVMASSSDIPTAVRAMRASAADF 106 (136)
T ss_dssp SSSEEEEESSHHHHTTSCCCTT--EEEEEEETTGGGBTTHHHHHHHHHHHTTCCCCEEEEESSCCHHHHHHHHHTTCSEE
T ss_pred CCcEEEEeCCHHHHHHHHhccC--CCEEEEeCcCCCCCccHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHcChHHh
Confidence 3899999999999999998766 999999999999 99999999998 457899999999999999999999999999
Q ss_pred EeCCCCHHHHHHHHHHHHHHHhh
Q 027234 78 LTKPVRIEELKNIWQHVVRKRKN 100 (226)
Q Consensus 78 l~KP~~~~~L~~~l~~~~~~~~~ 100 (226)
|.||++.++|..+++++..+...
T Consensus 107 l~KP~~~~~l~~~i~~~~~~~~~ 129 (136)
T 3kto_A 107 IEKPFIEHVLVHDVQQIINGAKE 129 (136)
T ss_dssp EESSBCHHHHHHHHHHHHHHHC-
T ss_pred eeCCCCHHHHHHHHHHHHhccCC
Confidence 99999999999999999877654
No 32
>1zh2_A KDP operon transcriptional regulatory protein KDPE; two-component system, gene regulation, transcription factor, KDP potassium transport system; 2.00A {Escherichia coli} SCOP: c.23.1.1 PDB: 1zh4_A
Probab=99.75 E-value=9.7e-18 Score=119.39 Aligned_cols=95 Identities=27% Similarity=0.400 Sum_probs=88.2
Q ss_pred CCcEEEEECCHHHHHHHHHhCCCCceEEEEccCCCCCCHHHHHHHHhcCCCCcEEEEeccCCHHHHHHHHhCCcceEEeC
Q 027234 1 MGFSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVGLEMDLPVIMMCAHGSKEVVMKGVTHDACDYLTK 80 (226)
Q Consensus 1 lg~~V~~~~~~~eal~~l~~~~~~~DlVl~D~~mp~~dG~~l~~~l~~~~~~pvI~ls~~~~~~~~~~a~~~ga~~yl~K 80 (226)
.||.|..+.++.+++..+.... ||+||+|+.||+++|+++++.++..+.+|+|++|+..+......+++.|+++|+.|
T Consensus 24 ~~~~v~~~~~~~~~~~~~~~~~--~dlvi~D~~l~~~~g~~~~~~l~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~K 101 (121)
T 1zh2_A 24 DGMRVFEAETLQRGLLEAATRK--PDLIILDLGLPDGDGIEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSK 101 (121)
T ss_dssp TTCEEEEESSHHHHHHHHHHHC--CSEEEEESEETTEEHHHHHHHHHTTCCCCEEEEESCCSHHHHHHHHHHTCSEEEES
T ss_pred CCCEEEEeCCHHHHHHHHhcCC--CCEEEEeCCCCCCcHHHHHHHHHhCCCCcEEEEECCCCHHHHHHHHhcCCCeEEeC
Confidence 3789999999999999988766 99999999999999999999998667899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHH
Q 027234 81 PVRIEELKNIWQHVVRK 97 (226)
Q Consensus 81 P~~~~~L~~~l~~~~~~ 97 (226)
|++.++|...+++++++
T Consensus 102 p~~~~~l~~~i~~~~~~ 118 (121)
T 1zh2_A 102 PFGIGELQARLRVALRR 118 (121)
T ss_dssp SCCHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHh
Confidence 99999999999988764
No 33
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=99.75 E-value=1.1e-17 Score=121.98 Aligned_cols=100 Identities=17% Similarity=0.257 Sum_probs=91.9
Q ss_pred CCcEEEEECCHHHHHHHHHhCCCCceEEEEccCCCCCCHHHHHHHHh-cCCCCcEEEEeccCCHHHHHHHHhCCcceEEe
Q 027234 1 MGFSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVG-LEMDLPVIMMCAHGSKEVVMKGVTHDACDYLT 79 (226)
Q Consensus 1 lg~~V~~~~~~~eal~~l~~~~~~~DlVl~D~~mp~~dG~~l~~~l~-~~~~~pvI~ls~~~~~~~~~~a~~~ga~~yl~ 79 (226)
.||.|..+.++.+|++.+.... ||+||+|+.||+++|+++++.++ ..+.+|||++|+..+.+...+++..|+++||.
T Consensus 30 ~~~~v~~~~~~~~a~~~l~~~~--~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~ 107 (137)
T 3hdg_A 30 HFPEVWSAGDGEEGERLFGLHA--PDVIITDIRMPKLGGLEMLDRIKAGGAKPYVIVISAFSEMKYFIKAIELGVHLFLP 107 (137)
T ss_dssp TCSCEEEESSHHHHHHHHHHHC--CSEEEECSSCSSSCHHHHHHHHHHTTCCCEEEECCCCCCHHHHHHHHHHCCSEECC
T ss_pred cCcEEEEECCHHHHHHHHhccC--CCEEEEeCCCCCCCHHHHHHHHHhcCCCCcEEEEecCcChHHHHHHHhCCcceeEc
Confidence 3688999999999999999876 99999999999999999999997 45789999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhhhh
Q 027234 80 KPVRIEELKNIWQHVVRKRKNER 102 (226)
Q Consensus 80 KP~~~~~L~~~l~~~~~~~~~~~ 102 (226)
||++.++|...+++++++.....
T Consensus 108 kP~~~~~l~~~i~~~~~~~~~~~ 130 (137)
T 3hdg_A 108 KPIEPGRLMETLEDFRHIKLAKE 130 (137)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999988766543
No 34
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=99.75 E-value=5.1e-18 Score=124.58 Aligned_cols=100 Identities=23% Similarity=0.315 Sum_probs=91.2
Q ss_pred CCcEEEEECCHHHHHHHHHh-CCCCceEEEEccCCCC-CCHHHHHHHHhcCCCCcEEEEeccCCHHHHHHHHhCCcceEE
Q 027234 1 MGFSVTKCNRAEIALDMLRT-NKNGYDIVISDVHMPD-MDGFKLLELVGLEMDLPVIMMCAHGSKEVVMKGVTHDACDYL 78 (226)
Q Consensus 1 lg~~V~~~~~~~eal~~l~~-~~~~~DlVl~D~~mp~-~dG~~l~~~l~~~~~~pvI~ls~~~~~~~~~~a~~~ga~~yl 78 (226)
.||.|..+.++.+|++.+.. .. ||+||+|+.||+ ++|+++++.++..+.+|||++|+..+.+...+++..|+++||
T Consensus 28 ~g~~v~~~~~~~~a~~~l~~~~~--~dlvi~D~~l~~~~~g~~~~~~l~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l 105 (140)
T 3h5i_A 28 YGYTVEIALTGEAAVEKVSGGWY--PDLILMDIELGEGMDGVQTALAIQQISELPVVFLTAHTEPAVVEKIRSVTAYGYV 105 (140)
T ss_dssp TTCEEEEESSHHHHHHHHHTTCC--CSEEEEESSCSSSCCHHHHHHHHHHHCCCCEEEEESSSSCCCCGGGGGSCEEEEE
T ss_pred cCCEEEEecChHHHHHHHhcCCC--CCEEEEeccCCCCCCHHHHHHHHHhCCCCCEEEEECCCCHHHHHHHHhCCCcEEE
Confidence 48999999999999999987 45 999999999995 999999999987789999999999988888899999999999
Q ss_pred eCCCCHHHHHHHHHHHHHHHhhhh
Q 027234 79 TKPVRIEELKNIWQHVVRKRKNER 102 (226)
Q Consensus 79 ~KP~~~~~L~~~l~~~~~~~~~~~ 102 (226)
.||++.++|...++++++..+...
T Consensus 106 ~KP~~~~~l~~~i~~~l~~~~~~~ 129 (140)
T 3h5i_A 106 MKSATEQVLITIVEMALRLYEANV 129 (140)
T ss_dssp ETTCCHHHHHHHHHHHHHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999988766544
No 35
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ...
Probab=99.75 E-value=3.1e-17 Score=118.11 Aligned_cols=95 Identities=33% Similarity=0.561 Sum_probs=86.7
Q ss_pred CCc-EEEEECCHHHHHHHHHhCCCCceEEEEccCCCCCCHHHHHHHHhc---CCCCcEEEEeccCCHHHHHHHHhCCcce
Q 027234 1 MGF-SVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVGL---EMDLPVIMMCAHGSKEVVMKGVTHDACD 76 (226)
Q Consensus 1 lg~-~V~~~~~~~eal~~l~~~~~~~DlVl~D~~mp~~dG~~l~~~l~~---~~~~pvI~ls~~~~~~~~~~a~~~ga~~ 76 (226)
.|| .|..+.++.+|++.+.... ||+||+|+.||+++|+++++.++. .+.+|+|++|+..+.+....+++.|+++
T Consensus 27 ~~~~~v~~~~~~~~a~~~~~~~~--~dlvi~D~~l~~~~g~~l~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~ga~~ 104 (128)
T 1jbe_A 27 LGFNNVEEAEDGVDALNKLQAGG--YGFVISDWNMPNMDGLELLKTIRAXXAMSALPVLMVTAEAKKENIIAAAQAGASG 104 (128)
T ss_dssp TTCCCEEEESSHHHHHHHHTTCC--CCEEEEESCCSSSCHHHHHHHHHC--CCTTCCEEEEESSCCHHHHHHHHHTTCSE
T ss_pred cCCcEEEeeCCHHHHHHHHHhcC--CCEEEEeCCCCCCCHHHHHHHHHhhcccCCCcEEEEecCccHHHHHHHHHhCcCc
Confidence 367 6889999999999998765 999999999999999999999975 3578999999999999999999999999
Q ss_pred EEeCCCCHHHHHHHHHHHHHH
Q 027234 77 YLTKPVRIEELKNIWQHVVRK 97 (226)
Q Consensus 77 yl~KP~~~~~L~~~l~~~~~~ 97 (226)
|+.||++.++|...++++++.
T Consensus 105 ~l~KP~~~~~l~~~i~~~~~~ 125 (128)
T 1jbe_A 105 YVVKPFTAATLEEKLNKIFEK 125 (128)
T ss_dssp EEESSCCHHHHHHHHHHHHHH
T ss_pred eeecCCCHHHHHHHHHHHHHH
Confidence 999999999999999988754
No 36
>3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A*
Probab=99.75 E-value=9.1e-18 Score=136.41 Aligned_cols=99 Identities=22% Similarity=0.361 Sum_probs=88.5
Q ss_pred CCcEEEEECCHHHHHHHHHhCCCCceEEEEccCCCCCCHHHHHHHHhcC---CCCcEEEEeccCCHHHHHHHHhCCcceE
Q 027234 1 MGFSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVGLE---MDLPVIMMCAHGSKEVVMKGVTHDACDY 77 (226)
Q Consensus 1 lg~~V~~~~~~~eal~~l~~~~~~~DlVl~D~~mp~~dG~~l~~~l~~~---~~~pvI~ls~~~~~~~~~~a~~~ga~~y 77 (226)
.||.|..+.++.+|++.+... ..||+||+|+.||++||+++++.++.. ..+|||++|+..+.....++++.||++|
T Consensus 147 ~~~~v~~a~~~~eal~~l~~~-~~~dlvllD~~mP~~dG~~l~~~lr~~~~~~~~~ii~~s~~~~~~~~~~a~~~Ga~~y 225 (259)
T 3luf_A 147 QLLQVHEASHAREALATLEQH-PAIRLVLVDYYMPEIDGISLVRMLRERYSKQQLAIIGISVSDKRGLSARYLKQGANDF 225 (259)
T ss_dssp TTCEEEEESSHHHHHHHHHHC-TTEEEEEECSCCSSSCHHHHHHHHHHHCCTTTSEEEEEECSSSSSHHHHHHHTTCSEE
T ss_pred cCcEEEEeCCHHHHHHHHhcC-CCCCEEEEcCCCCCCCHHHHHHHHHhccCCCCCeEEEEEccCCHHHHHHHHhcChhhe
Confidence 378999999999999999874 238999999999999999999999743 3589999999999999999999999999
Q ss_pred EeCCCCHHHHHHHHHHHHHHHhh
Q 027234 78 LTKPVRIEELKNIWQHVVRKRKN 100 (226)
Q Consensus 78 l~KP~~~~~L~~~l~~~~~~~~~ 100 (226)
|.||++.++|...++++++....
T Consensus 226 l~KP~~~~~L~~~i~~~l~~~~~ 248 (259)
T 3luf_A 226 LNQPFEPEELQCRVSHNLEALEQ 248 (259)
T ss_dssp EESSCCHHHHHHHHHHHHHHHHC
T ss_pred EcCCCCHHHHHHHHHHHHHhHhh
Confidence 99999999999999999876543
No 37
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=99.75 E-value=9.5e-18 Score=122.80 Aligned_cols=100 Identities=19% Similarity=0.333 Sum_probs=89.1
Q ss_pred CCcEEEEECCHHHHHHHHHhCCCCceEEEEccCCCCCCHHHHHHHHhc---CCCCcEEEEeccCCHHHHH-HHHhCCcce
Q 027234 1 MGFSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVGL---EMDLPVIMMCAHGSKEVVM-KGVTHDACD 76 (226)
Q Consensus 1 lg~~V~~~~~~~eal~~l~~~~~~~DlVl~D~~mp~~dG~~l~~~l~~---~~~~pvI~ls~~~~~~~~~-~a~~~ga~~ 76 (226)
.||.|..+.++.+|++.+.... ||+||+|+.||+++|+++++.++. .+.+|||++|+..+..... .++..|+++
T Consensus 29 ~g~~v~~~~~~~~a~~~l~~~~--~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~~g~~~ 106 (140)
T 3grc_A 29 GGFDSDMVHSAAQALEQVARRP--YAAMTVDLNLPDQDGVSLIRALRRDSRTRDLAIVVVSANAREGELEFNSQPLAVST 106 (140)
T ss_dssp TTCEEEEECSHHHHHHHHHHSC--CSEEEECSCCSSSCHHHHHHHHHTSGGGTTCEEEEECTTHHHHHHHHCCTTTCCCE
T ss_pred CCCeEEEECCHHHHHHHHHhCC--CCEEEEeCCCCCCCHHHHHHHHHhCcccCCCCEEEEecCCChHHHHHHhhhcCCCE
Confidence 4899999999999999999876 999999999999999999999974 4689999999988877777 899999999
Q ss_pred EEeCCCCHHHHHHHHHHHHHHHhhhh
Q 027234 77 YLTKPVRIEELKNIWQHVVRKRKNER 102 (226)
Q Consensus 77 yl~KP~~~~~L~~~l~~~~~~~~~~~ 102 (226)
||.||++.++|...+++++++.....
T Consensus 107 ~l~kP~~~~~l~~~i~~~l~~~~~~~ 132 (140)
T 3grc_A 107 WLEKPIDENLLILSLHRAIDNMAEGK 132 (140)
T ss_dssp EECSSCCHHHHHHHHHHHHHHHC---
T ss_pred EEeCCCCHHHHHHHHHHHHHhcCCCC
Confidence 99999999999999999988765433
No 38
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=99.75 E-value=2.7e-18 Score=125.85 Aligned_cols=98 Identities=15% Similarity=0.339 Sum_probs=89.2
Q ss_pred CCcEEEEECCHHHHHHHHHh-CCCCceEEEEccCCC-CCCHHHHHHHHhc---CCCCcEEEEeccCCHHHHHHHHhCCcc
Q 027234 1 MGFSVTKCNRAEIALDMLRT-NKNGYDIVISDVHMP-DMDGFKLLELVGL---EMDLPVIMMCAHGSKEVVMKGVTHDAC 75 (226)
Q Consensus 1 lg~~V~~~~~~~eal~~l~~-~~~~~DlVl~D~~mp-~~dG~~l~~~l~~---~~~~pvI~ls~~~~~~~~~~a~~~ga~ 75 (226)
.||+|..+.++.+|++.+.. .. ||+||+|+.|| +++|+++++.++. .+.+|||++|+..+.+...+++..|++
T Consensus 28 ~~~~v~~~~~~~~a~~~l~~~~~--~dlvi~D~~l~~~~~g~~~~~~l~~~~~~~~~~ii~ls~~~~~~~~~~~~~~g~~ 105 (140)
T 3lua_A 28 GEYDFIEVENLKKFYSIFKDLDS--ITLIIMDIAFPVEKEGLEVLSAIRNNSRTANTPVIIATKSDNPGYRHAALKFKVS 105 (140)
T ss_dssp CCCEEEEECSHHHHHTTTTTCCC--CSEEEECSCSSSHHHHHHHHHHHHHSGGGTTCCEEEEESCCCHHHHHHHHHSCCS
T ss_pred cCccEEEECCHHHHHHHHhcCCC--CcEEEEeCCCCCCCcHHHHHHHHHhCcccCCCCEEEEeCCCCHHHHHHHHHcCCC
Confidence 48999999999999999988 76 99999999999 9999999999975 578999999999999999999999999
Q ss_pred eEEeCCCCHHHHHHHHHHHHHHHhh
Q 027234 76 DYLTKPVRIEELKNIWQHVVRKRKN 100 (226)
Q Consensus 76 ~yl~KP~~~~~L~~~l~~~~~~~~~ 100 (226)
+||.||++.++|..++++++++...
T Consensus 106 ~~l~KP~~~~~l~~~i~~~~~~~~~ 130 (140)
T 3lua_A 106 DYILKPYPTKRLENSVRSVLKICQR 130 (140)
T ss_dssp EEEESSCCTTHHHHHHHHHHCC---
T ss_pred EEEECCCCHHHHHHHHHHHHHhccc
Confidence 9999999999999999999876544
No 39
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=99.75 E-value=8.8e-18 Score=121.45 Aligned_cols=96 Identities=26% Similarity=0.386 Sum_probs=81.2
Q ss_pred CCcEEEEECCHHHHHHHHHhCCCCceEEEEccCCCCCCHHHHHHHHh-cCCCCcEEEEeccCCHHHHHHHHhCCcceEEe
Q 027234 1 MGFSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVG-LEMDLPVIMMCAHGSKEVVMKGVTHDACDYLT 79 (226)
Q Consensus 1 lg~~V~~~~~~~eal~~l~~~~~~~DlVl~D~~mp~~dG~~l~~~l~-~~~~~pvI~ls~~~~~~~~~~a~~~ga~~yl~ 79 (226)
.||.|..+.++.+|++.+.... ||+||+|+.||+++|+++++.++ ..+.+|+|++|+..+.+...++++.|+++||.
T Consensus 30 ~g~~v~~~~~~~~a~~~l~~~~--~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~ 107 (130)
T 3eod_A 30 LGATTVLAADGVDALELLGGFT--PDLMICDIAMPRMNGLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLL 107 (130)
T ss_dssp TTCEEEEESCHHHHHHHHTTCC--CSEEEECCC-----CHHHHHHHHHTTCCCCEEEEECCCCHHHHHHHHHHCCSEEEE
T ss_pred CCceEEEeCCHHHHHHHHhcCC--CCEEEEecCCCCCCHHHHHHHHHhcCCCCCEEEEEcCCCHHHHHHHHHcCCCEEEe
Confidence 4899999999999999998866 99999999999999999999997 55789999999999999999999999999999
Q ss_pred CCC-CHHHHHHHHHHHHHHH
Q 027234 80 KPV-RIEELKNIWQHVVRKR 98 (226)
Q Consensus 80 KP~-~~~~L~~~l~~~~~~~ 98 (226)
||+ +.++|...+++++.++
T Consensus 108 KP~~~~~~l~~~i~~~l~~~ 127 (130)
T 3eod_A 108 KPVKDLNRLREMVFACLYPS 127 (130)
T ss_dssp SCC---CHHHHHHHHHHC--
T ss_pred CCCCcHHHHHHHHHHHhchh
Confidence 999 9999999999987654
No 40
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=99.74 E-value=2.1e-17 Score=119.76 Aligned_cols=97 Identities=23% Similarity=0.283 Sum_probs=84.2
Q ss_pred CCcEEEEECCHHHHHHHHHhCCCCceEEEEccCCCCCCHHHHHHHHhc---CCCCcEEEEeccCCHHHHHHHHhCCcceE
Q 027234 1 MGFSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVGL---EMDLPVIMMCAHGSKEVVMKGVTHDACDY 77 (226)
Q Consensus 1 lg~~V~~~~~~~eal~~l~~~~~~~DlVl~D~~mp~~dG~~l~~~l~~---~~~~pvI~ls~~~~~~~~~~a~~~ga~~y 77 (226)
.||.|..+.++.+|++.+.... ||+||+|+.||+++|+++++.++. .+.+|||++|+..+... ..++..|+++|
T Consensus 26 ~~~~v~~~~~~~~a~~~l~~~~--~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~pii~~s~~~~~~~-~~~~~~g~~~~ 102 (133)
T 3nhm_A 26 GEFDCTTAADGASGLQQALAHP--PDVLISDVNMDGMDGYALCGHFRSEPTLKHIPVIFVSGYAPRTE-GPADQPVPDAY 102 (133)
T ss_dssp TTSEEEEESSHHHHHHHHHHSC--CSEEEECSSCSSSCHHHHHHHHHHSTTTTTCCEEEEESCCC------TTSCCCSEE
T ss_pred CCcEEEEECCHHHHHHHHhcCC--CCEEEEeCCCCCCCHHHHHHHHHhCCccCCCCEEEEeCCCcHhH-HHHhhcCCceE
Confidence 3789999999999999999876 999999999999999999999985 35799999999888877 89999999999
Q ss_pred EeCCCCHHHHHHHHHHHHHHHhh
Q 027234 78 LTKPVRIEELKNIWQHVVRKRKN 100 (226)
Q Consensus 78 l~KP~~~~~L~~~l~~~~~~~~~ 100 (226)
|.||++.++|...+++++++...
T Consensus 103 l~KP~~~~~l~~~i~~~l~~~~~ 125 (133)
T 3nhm_A 103 LVKPVKPPVLIAQLHALLARAEA 125 (133)
T ss_dssp EESSCCHHHHHHHHHHHHHHHC-
T ss_pred EeccCCHHHHHHHHHHHHhhhcc
Confidence 99999999999999999987654
No 41
>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis}
Probab=99.74 E-value=3.7e-18 Score=135.60 Aligned_cols=95 Identities=21% Similarity=0.308 Sum_probs=87.7
Q ss_pred cEE-EEECCHHHHHHHHHhCCCCceEEEEccCCCCCCHHHHHHHHh-cCCCCcEEEEeccCCHHHHHHHHhCCcceEEeC
Q 027234 3 FSV-TKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVG-LEMDLPVIMMCAHGSKEVVMKGVTHDACDYLTK 80 (226)
Q Consensus 3 ~~V-~~~~~~~eal~~l~~~~~~~DlVl~D~~mp~~dG~~l~~~l~-~~~~~pvI~ls~~~~~~~~~~a~~~ga~~yl~K 80 (226)
|.+ ..+.++.+|++.+.... ||+||+|+.||+++|+++++.++ ..+.+|||++|+..+.+....+++.||++||.|
T Consensus 27 ~~vv~~~~~~~~al~~l~~~~--~dlvllD~~lp~~~g~~~~~~lr~~~~~~~ii~lt~~~~~~~~~~~~~~Ga~~~l~K 104 (225)
T 3c3w_A 27 LDVVGEAGSVAEAMARVPAAR--PDVAVLDVRLPDGNGIELCRDLLSRMPDLRCLILTSYTSDEAMLDAILAGASGYVVK 104 (225)
T ss_dssp EEEEEEESSHHHHHHHHHHHC--CSEEEECSEETTEEHHHHHHHHHHHCTTCEEEEGGGSSSHHHHHHHHHHTCCCHHHH
T ss_pred cEEEEEECCHHHHHHHHhhcC--CCEEEEeCCCCCCCHHHHHHHHHHhCCCCcEEEEECCCCHHHHHHHHHCCCCEEEEC
Confidence 774 57999999999998876 99999999999999999999997 467899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHh
Q 027234 81 PVRIEELKNIWQHVVRKRK 99 (226)
Q Consensus 81 P~~~~~L~~~l~~~~~~~~ 99 (226)
|++.++|...++.++++..
T Consensus 105 p~~~~~L~~~i~~~~~~~~ 123 (225)
T 3c3w_A 105 DIKGMELARAVKDVGAGRS 123 (225)
T ss_dssp HHHHHHHHHHHHHHHHHGG
T ss_pred CCCHHHHHHHHHHHHcCCe
Confidence 9999999999999987654
No 42
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=99.74 E-value=2.1e-18 Score=136.83 Aligned_cols=95 Identities=5% Similarity=-0.069 Sum_probs=82.4
Q ss_pred CcEEEE-ECCHHHHHH-HHHhCCCCceEEEEccCCCCCCHHHHHHHHhc--CCCCcEEEEeccCCHHHHHHHHhCCcceE
Q 027234 2 GFSVTK-CNRAEIALD-MLRTNKNGYDIVISDVHMPDMDGFKLLELVGL--EMDLPVIMMCAHGSKEVVMKGVTHDACDY 77 (226)
Q Consensus 2 g~~V~~-~~~~~eal~-~l~~~~~~~DlVl~D~~mp~~dG~~l~~~l~~--~~~~pvI~ls~~~~~~~~~~a~~~ga~~y 77 (226)
||.|.. +.++.+++. .+.... ||+||+|+.||++||+++++.++. .+++|||++|+..+......++..||++|
T Consensus 32 ~~~v~~~~~~~~~~~~~~~~~~~--~dlvllD~~mp~~~G~~~~~~lr~~~~~~~~ii~lt~~~~~~~~~~~~~~Ga~~~ 109 (225)
T 3klo_A 32 PLALEITPFSELWLEENKPESRS--IQMLVIDYSRISDDVLTDYSSFKHISCPDAKEVIINCPQDIEHKLLFKWNNLAGV 109 (225)
T ss_dssp SEEEEEECGGGHHHHTTCSGGGG--CCEEEEEGGGCCHHHHHHHHHHHHHHCTTCEEEEEEECTTCCHHHHTTSTTEEEE
T ss_pred CceEEEEeCCcHHHHHHHhhccC--CCEEEEeCCCCCCCHHHHHHHHHHhhCCCCcEEEEECCcchhHHHHHHHhCCCEE
Confidence 677754 456666665 466655 999999999999999999999975 68899999999999888999999999999
Q ss_pred EeCCCCHHHHHHHHHHHHHHH
Q 027234 78 LTKPVRIEELKNIWQHVVRKR 98 (226)
Q Consensus 78 l~KP~~~~~L~~~l~~~~~~~ 98 (226)
|.||++.++|..+++.++++.
T Consensus 110 l~Kp~~~~~L~~~i~~~~~~~ 130 (225)
T 3klo_A 110 FYIDDDMDTLIKGMSKILQDE 130 (225)
T ss_dssp EETTCCHHHHHHHHHHHHTTC
T ss_pred EecCCCHHHHHHHHHHHHCCC
Confidence 999999999999999988654
No 43
>1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1p6u_A
Probab=99.74 E-value=1.7e-17 Score=119.67 Aligned_cols=94 Identities=32% Similarity=0.540 Sum_probs=86.1
Q ss_pred CCc-EEEEECCHHHHHHHHHhCCCCceEEEEccCCCCCCHHHHHHHHhcC---CCCcEEEEeccCCHHHHHHHHhCCcce
Q 027234 1 MGF-SVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVGLE---MDLPVIMMCAHGSKEVVMKGVTHDACD 76 (226)
Q Consensus 1 lg~-~V~~~~~~~eal~~l~~~~~~~DlVl~D~~mp~~dG~~l~~~l~~~---~~~pvI~ls~~~~~~~~~~a~~~ga~~ 76 (226)
.|| .|..+.++.+|++.+.... ||+||+|+.||+++|+++++.++.. +.+|+|++|+..+.+....+++.|+++
T Consensus 29 ~g~~~v~~~~~~~~a~~~~~~~~--~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~ 106 (129)
T 1p6q_A 29 LGFKQITAAGDGEQGMKIMAQNP--HHLVISDFNMPKMDGLGLLQAVRANPATKKAAFIILTAQGDRALVQKAAALGANN 106 (129)
T ss_dssp TTCSCEECCSSHHHHHHHHHTSC--CSEEEECSSSCSSCHHHHHHHHTTCTTSTTCEEEECCSCCCHHHHHHHHHHTCSC
T ss_pred CCCcEEEecCCHHHHHHHHHcCC--CCEEEEeCCCCCCCHHHHHHHHhcCccccCCCEEEEeCCCCHHHHHHHHHcCCCE
Confidence 377 7889999999999998866 9999999999999999999999853 578999999999999999999999999
Q ss_pred EEeCCCCHHHHHHHHHHHHH
Q 027234 77 YLTKPVRIEELKNIWQHVVR 96 (226)
Q Consensus 77 yl~KP~~~~~L~~~l~~~~~ 96 (226)
|+.||++.++|...++++++
T Consensus 107 ~l~KP~~~~~l~~~i~~~~~ 126 (129)
T 1p6q_A 107 VLAKPFTIEKMKAAIEAVFG 126 (129)
T ss_dssp EECCCSSHHHHHHHHHHHHH
T ss_pred EEECCCCHHHHHHHHHHHHH
Confidence 99999999999999988764
No 44
>1i3c_A Response regulator RCP1; phytochrome, signaling protein; 1.90A {Synechocystis SP} SCOP: c.23.1.1 PDB: 1jlk_A
Probab=99.74 E-value=4.4e-17 Score=120.83 Aligned_cols=94 Identities=17% Similarity=0.298 Sum_probs=84.3
Q ss_pred EEEEECCHHHHHHHHHhC-----CCCceEEEEccCCCCCCHHHHHHHHhcC---CCCcEEEEeccCCHHHHHHHHhCCcc
Q 027234 4 SVTKCNRAEIALDMLRTN-----KNGYDIVISDVHMPDMDGFKLLELVGLE---MDLPVIMMCAHGSKEVVMKGVTHDAC 75 (226)
Q Consensus 4 ~V~~~~~~~eal~~l~~~-----~~~~DlVl~D~~mp~~dG~~l~~~l~~~---~~~pvI~ls~~~~~~~~~~a~~~ga~ 75 (226)
.|..+.++.+|++.+... ...||+||+|+.||+++|+++++.++.. +.+|||++|+..+.+...++++.||+
T Consensus 36 ~v~~~~~~~~al~~l~~~~~~~~~~~~dlillD~~lp~~~g~~l~~~l~~~~~~~~~piiils~~~~~~~~~~~~~~ga~ 115 (149)
T 1i3c_A 36 ELIILRDGLAAMAFLQQQGEYENSPRPNLILLDLNLPKKDGREVLAEIKQNPDLKRIPVVVLTTSHNEDDVIASYELHVN 115 (149)
T ss_dssp EEEEECSHHHHHHHHTTCGGGTTCCCCSEEEECSCCSSSCHHHHHHHHHHCTTTTTSCEEEEESCCCHHHHHHHHHTTCS
T ss_pred cEEEeCCHHHHHHHHHhccccccCCCCCEEEEeCCCCCCcHHHHHHHHHhCcCcCCCeEEEEECCCChHHHHHHHHcCCc
Confidence 789999999999999752 0239999999999999999999999754 57899999999999999999999999
Q ss_pred eEEeCCCCHHHHHHHHHHHHHH
Q 027234 76 DYLTKPVRIEELKNIWQHVVRK 97 (226)
Q Consensus 76 ~yl~KP~~~~~L~~~l~~~~~~ 97 (226)
+||.||++.++|..+++++.+.
T Consensus 116 ~~l~KP~~~~~L~~~i~~~~~~ 137 (149)
T 1i3c_A 116 CYLTKSRNLKDLFKMVQGIESF 137 (149)
T ss_dssp EEEECCSSHHHHHHHHHHHHHH
T ss_pred EEEECCCCHHHHHHHHHHHHHH
Confidence 9999999999999999988653
No 45
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=99.74 E-value=3.4e-17 Score=120.80 Aligned_cols=97 Identities=20% Similarity=0.388 Sum_probs=89.7
Q ss_pred CcEEEEECCHHHHHHHHHhCCCCceEEEEccCCCCCCHHHHHHHHhc---CCCCcEEEEeccCCHHHHHHHHhCCcceEE
Q 027234 2 GFSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVGL---EMDLPVIMMCAHGSKEVVMKGVTHDACDYL 78 (226)
Q Consensus 2 g~~V~~~~~~~eal~~l~~~~~~~DlVl~D~~mp~~dG~~l~~~l~~---~~~~pvI~ls~~~~~~~~~~a~~~ga~~yl 78 (226)
||+|..+.++.+|++.+.... ||+||+|+.||+++|+++++.++. .+.+|||++|+..+.+....++..|+++||
T Consensus 32 g~~v~~~~~~~~a~~~l~~~~--~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~pii~ls~~~~~~~~~~~~~~g~~~~l 109 (147)
T 2zay_A 32 GFDIIQCGNAIEAVPVAVKTH--PHLIITEANMPKISGMDLFNSLKKNPQTASIPVIALSGRATAKEEAQLLDMGFIDFI 109 (147)
T ss_dssp TEEEEEESSHHHHHHHHHHHC--CSEEEEESCCSSSCHHHHHHHHHTSTTTTTSCEEEEESSCCHHHHHHHHHHTCSEEE
T ss_pred CCeEEEeCCHHHHHHHHHcCC--CCEEEEcCCCCCCCHHHHHHHHHcCcccCCCCEEEEeCCCCHHHHHHHHhCCCCEEE
Confidence 789999999999999999876 999999999999999999999985 467999999999999999999999999999
Q ss_pred eCCCCHHHHHHHHHHHHHHHhh
Q 027234 79 TKPVRIEELKNIWQHVVRKRKN 100 (226)
Q Consensus 79 ~KP~~~~~L~~~l~~~~~~~~~ 100 (226)
.||++.++|...++++++....
T Consensus 110 ~kp~~~~~L~~~i~~~~~~~~~ 131 (147)
T 2zay_A 110 AKPVNAIRLSARIKRVLKLLYE 131 (147)
T ss_dssp ESSCCHHHHHHHHHHHHHHHC-
T ss_pred eCCCCHHHHHHHHHHHHHHHHh
Confidence 9999999999999999876544
No 46
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=99.74 E-value=2.7e-17 Score=122.05 Aligned_cols=96 Identities=24% Similarity=0.363 Sum_probs=89.0
Q ss_pred cEEEEECCHHHHHHHHHhCCCCceEEEEccCCCCCCHHHHHHHHh-cCCCCcEEEEeccCCHHHHHHHHhCCcceEEeCC
Q 027234 3 FSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVG-LEMDLPVIMMCAHGSKEVVMKGVTHDACDYLTKP 81 (226)
Q Consensus 3 ~~V~~~~~~~eal~~l~~~~~~~DlVl~D~~mp~~dG~~l~~~l~-~~~~~pvI~ls~~~~~~~~~~a~~~ga~~yl~KP 81 (226)
|.|..+.++.+|++.+.... ||+||+|+.||+++|+++++.++ ..+.+|||++|+..+.+...++++.|+++||.||
T Consensus 47 ~~v~~~~~~~~al~~l~~~~--~dlii~D~~l~~~~g~~~~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~Kp 124 (150)
T 4e7p_A 47 ESVLQAKNGQEAIQLLEKES--VDIAILDVEMPVKTGLEVLEWIRSEKLETKVVVVTTFKRAGYFERAVKAGVDAYVLKE 124 (150)
T ss_dssp EEEEEESSHHHHHHHHTTSC--CSEEEECSSCSSSCHHHHHHHHHHTTCSCEEEEEESCCCHHHHHHHHHTTCSEEEETT
T ss_pred EEEEEECCHHHHHHHhhccC--CCEEEEeCCCCCCcHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHCCCcEEEecC
Confidence 77899999999999998876 99999999999999999999997 4578999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhh
Q 027234 82 VRIEELKNIWQHVVRKRKN 100 (226)
Q Consensus 82 ~~~~~L~~~l~~~~~~~~~ 100 (226)
++.++|..++++++++...
T Consensus 125 ~~~~~l~~~i~~~~~~~~~ 143 (150)
T 4e7p_A 125 RSIADLMQTLHTVLEGRKE 143 (150)
T ss_dssp SCHHHHHHHHHHHHTTCCE
T ss_pred CCHHHHHHHHHHHHcCCEE
Confidence 9999999999999876543
No 47
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=99.74 E-value=1.7e-17 Score=118.67 Aligned_cols=94 Identities=18% Similarity=0.392 Sum_probs=80.5
Q ss_pred CCcEEEEECCHHHHHHHHHhCCCCceEEEEccCCCCCCHHHHHHHHhcC---CCCcEEEEeccCCHHHHHHHHhCCcceE
Q 027234 1 MGFSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVGLE---MDLPVIMMCAHGSKEVVMKGVTHDACDY 77 (226)
Q Consensus 1 lg~~V~~~~~~~eal~~l~~~~~~~DlVl~D~~mp~~dG~~l~~~l~~~---~~~pvI~ls~~~~~~~~~~a~~~ga~~y 77 (226)
.||.|..+.++.+|++.+.... ||+||+|+.||+++|+++++.++.. +.+|+|++|+..+.+....+++.|+++|
T Consensus 24 ~~~~v~~~~~~~~a~~~~~~~~--~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~ 101 (124)
T 1mb3_A 24 QGYETLQTREGLSALSIARENK--PDLILMDIQLPEISGLEVTKWLKEDDDLAHIPVVAVTAFAMKGDEERIREGGCEAY 101 (124)
T ss_dssp TTCEEEEESCHHHHHHHHHHHC--CSEEEEESBCSSSBHHHHHHHHHHSTTTTTSCEEEEC------CHHHHHHHTCSEE
T ss_pred cCcEEEEeCCHHHHHHHHhcCC--CCEEEEeCCCCCCCHHHHHHHHHcCccccCCcEEEEECCCCHHHHHHHHhCCCCEE
Confidence 3789999999999999998866 9999999999999999999999753 5789999999988888899999999999
Q ss_pred EeCCCCHHHHHHHHHHHHH
Q 027234 78 LTKPVRIEELKNIWQHVVR 96 (226)
Q Consensus 78 l~KP~~~~~L~~~l~~~~~ 96 (226)
|.||++.++|...+++++.
T Consensus 102 l~KP~~~~~l~~~i~~~~~ 120 (124)
T 1mb3_A 102 ISKPISVVHFLETIKRLLE 120 (124)
T ss_dssp ECSSCCHHHHHHHHHHHHS
T ss_pred EeCCCCHHHHHHHHHHHHh
Confidence 9999999999999988764
No 48
>3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg}
Probab=99.74 E-value=8.7e-18 Score=123.64 Aligned_cols=96 Identities=23% Similarity=0.400 Sum_probs=81.2
Q ss_pred CcEEE-EECCHHHHHHHHHhCCCCceEEEEccCCCCCCHHHHHHHHh-cCCCCcEEEEeccCCHHHHHHHHhCCcceEEe
Q 027234 2 GFSVT-KCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVG-LEMDLPVIMMCAHGSKEVVMKGVTHDACDYLT 79 (226)
Q Consensus 2 g~~V~-~~~~~~eal~~l~~~~~~~DlVl~D~~mp~~dG~~l~~~l~-~~~~~pvI~ls~~~~~~~~~~a~~~ga~~yl~ 79 (226)
||.+. .+.++.+|++.+.... ||+||+|+.||+++|+++++.++ ..+.+|+|++|+..+.+....+++.|+++||.
T Consensus 28 ~~~~~~~~~~~~~al~~~~~~~--~dlvllD~~lp~~~g~~l~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~~ga~~~l~ 105 (141)
T 3cu5_A 28 SFDQIDQADDGINAIQIALKHP--PNVLLTDVRMPRMDGIELVDNILKLYPDCSVIFMSGYSDKEYLKAAIKFRAIRYVE 105 (141)
T ss_dssp CCSEEEEESSHHHHHHHHTTSC--CSEEEEESCCSSSCHHHHHHHHHHHCTTCEEEEECCSTTTCCC------CCCEEEC
T ss_pred CcEEeeecccHHHHHHHHhcCC--CCEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEeCCCcHHHHHHHHhCCccEEEe
Confidence 67766 8999999999998765 99999999999999999999997 45789999999998888888999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHh
Q 027234 80 KPVRIEELKNIWQHVVRKRK 99 (226)
Q Consensus 80 KP~~~~~L~~~l~~~~~~~~ 99 (226)
||++.++|...++++++...
T Consensus 106 KP~~~~~L~~~i~~~~~~~~ 125 (141)
T 3cu5_A 106 KPIDPSEIMDALKQSIQTVL 125 (141)
T ss_dssp SSCCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999886554
No 49
>1dz3_A Stage 0 sporulation protein A; response regulator, domain swapping; 1.65A {Bacillus stearothermophilus} SCOP: c.23.1.1 PDB: 1qmp_A*
Probab=99.74 E-value=1.5e-17 Score=120.38 Aligned_cols=94 Identities=31% Similarity=0.483 Sum_probs=85.8
Q ss_pred CcEEE-EECCHHHHHHHHHhCCCCceEEEEccCCCCCCHHHHHHHHhc--CCCCcEEEEeccCCHHHHHHHHhCCcceEE
Q 027234 2 GFSVT-KCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVGL--EMDLPVIMMCAHGSKEVVMKGVTHDACDYL 78 (226)
Q Consensus 2 g~~V~-~~~~~~eal~~l~~~~~~~DlVl~D~~mp~~dG~~l~~~l~~--~~~~pvI~ls~~~~~~~~~~a~~~ga~~yl 78 (226)
||.+. .+.++.+|++.+.... ||+||+|+.||+++|+++++.++. .+.+|+|++|+..+.+...++++.|+++||
T Consensus 27 ~~~~~~~~~~~~~a~~~~~~~~--~dlvllD~~l~~~~g~~~~~~l~~~~~~~~~ii~ls~~~~~~~~~~~~~~ga~~~l 104 (130)
T 1dz3_A 27 DMEVIGTAYNGQDCLQMLEEKR--PDILLLDIIMPHLDGLAVLERIRAGFEHQPNVIMLTAFGQEDVTKKAVELGASYFI 104 (130)
T ss_dssp TEEEEEEESSHHHHHHHHHHHC--CSEEEEESCCSSSCHHHHHHHHHHHCSSCCEEEEEEETTCHHHHHHHHHTTCEEEE
T ss_pred CceEEEEeCCHHHHHHHHhcCC--CCEEEEecCCCCCCHHHHHHHHHhcCCCCCcEEEEecCCCHHHHHHHHHcCCCEEE
Confidence 67765 8999999999998866 999999999999999999999974 467899999999999999999999999999
Q ss_pred eCCCCHHHHHHHHHHHHHH
Q 027234 79 TKPVRIEELKNIWQHVVRK 97 (226)
Q Consensus 79 ~KP~~~~~L~~~l~~~~~~ 97 (226)
.||++.++|...++++++.
T Consensus 105 ~KP~~~~~l~~~i~~~~~~ 123 (130)
T 1dz3_A 105 LKPFDMENLAHHIRQVYGK 123 (130)
T ss_dssp ECSSCCTTHHHHHHHHHHC
T ss_pred eCCCCHHHHHHHHHHHhcC
Confidence 9999999999999988754
No 50
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=99.73 E-value=6e-18 Score=144.15 Aligned_cols=97 Identities=23% Similarity=0.429 Sum_probs=90.5
Q ss_pred CCcEEEEECCHHHHHHHHHhCCCCceEEEEccCCCCCCHHHHHHHHh-cCCCCcEEEEeccCCHHHHHHHHhCCcceEEe
Q 027234 1 MGFSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVG-LEMDLPVIMMCAHGSKEVVMKGVTHDACDYLT 79 (226)
Q Consensus 1 lg~~V~~~~~~~eal~~l~~~~~~~DlVl~D~~mp~~dG~~l~~~l~-~~~~~pvI~ls~~~~~~~~~~a~~~ga~~yl~ 79 (226)
.||.|..+.++.+|++.+.... ||+||+|+.||+|||+++++.++ ..+.+|||++|++.+.+...++++.||++||.
T Consensus 23 ~g~~v~~a~~~~eal~~l~~~~--~DlvllDi~mP~~dG~ell~~lr~~~~~~pvI~lT~~~~~~~~~~a~~~Ga~~yl~ 100 (368)
T 3dzd_A 23 EGYHPDTAKTLREAEKKIKELF--FPVIVLDVWMPDGDGVNFIDFIKENSPDSVVIVITGHGSVDTAVKAIKKGAYEFLE 100 (368)
T ss_dssp TTCEEEEESSHHHHHHHHHHBC--CSEEEEESEETTEETTTHHHHHHHHCTTCEEEEEECSSCCHHHHHHHHHTCCEEEE
T ss_pred cCCEEEEECCHHHHHHHHHhCC--CCEEEEeCCCCCCCHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHhcCcceEEe
Confidence 4899999999999999999877 99999999999999999999997 56789999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHh
Q 027234 80 KPVRIEELKNIWQHVVRKRK 99 (226)
Q Consensus 80 KP~~~~~L~~~l~~~~~~~~ 99 (226)
||++.++|...+++++....
T Consensus 101 KP~~~~~L~~~i~~~l~~~~ 120 (368)
T 3dzd_A 101 KPFSVERFLLTIKHAFEEYS 120 (368)
T ss_dssp SSCCHHHHHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHHHHhh
Confidence 99999999999999887543
No 51
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=99.73 E-value=2.1e-17 Score=120.30 Aligned_cols=96 Identities=26% Similarity=0.464 Sum_probs=87.7
Q ss_pred CCcEEEEECCHHHHHHHHHhCCCCceEEEEccCCCCCCHHHHHHHHhc-CCCCcEEEEeccCCHHHHHHHHhCCcceEEe
Q 027234 1 MGFSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVGL-EMDLPVIMMCAHGSKEVVMKGVTHDACDYLT 79 (226)
Q Consensus 1 lg~~V~~~~~~~eal~~l~~~~~~~DlVl~D~~mp~~dG~~l~~~l~~-~~~~pvI~ls~~~~~~~~~~a~~~ga~~yl~ 79 (226)
.||.|..+.++.+|++.+.... ||+||+|+.||+++|+++++.++. .+.+|+|++|+..+......+++.|+++||.
T Consensus 26 ~g~~v~~~~~~~~a~~~~~~~~--~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~ 103 (136)
T 1mvo_A 26 SGYDVITASDGEEALKKAETEK--PDLIVLDVMLPKLDGIEVCKQLRQQKLMFPILMLTAKDEEFDKVLGLELGADDYMT 103 (136)
T ss_dssp TTCEEEEESSHHHHHHHHHHHC--CSEEEEESSCSSSCHHHHHHHHHHTTCCCCEEEEECTTCCCCHHHHHHTTCCEEEE
T ss_pred CCcEEEEecCHHHHHHHHhhcC--CCEEEEecCCCCCCHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHhCCCCEEEE
Confidence 3799999999999999998866 999999999999999999999984 4789999999998888888999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHH
Q 027234 80 KPVRIEELKNIWQHVVRKR 98 (226)
Q Consensus 80 KP~~~~~L~~~l~~~~~~~ 98 (226)
||++.++|...++++++..
T Consensus 104 KP~~~~~l~~~i~~~~~~~ 122 (136)
T 1mvo_A 104 KPFSPREVNARVKAILRRS 122 (136)
T ss_dssp SSCCHHHHHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHHHHHhh
Confidence 9999999999999887653
No 52
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A
Probab=99.73 E-value=1.7e-17 Score=134.41 Aligned_cols=98 Identities=30% Similarity=0.497 Sum_probs=90.3
Q ss_pred CCcEEEEECCHHHHHHHHHhCCCCceEEEEccCCCCCCHHHHHHHHhc-CCCCcEEEEeccCCHHHHHHHHhCCcceEEe
Q 027234 1 MGFSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVGL-EMDLPVIMMCAHGSKEVVMKGVTHDACDYLT 79 (226)
Q Consensus 1 lg~~V~~~~~~~eal~~l~~~~~~~DlVl~D~~mp~~dG~~l~~~l~~-~~~~pvI~ls~~~~~~~~~~a~~~ga~~yl~ 79 (226)
+||+|..+.++.+|++.+.... ||+||+|+.||+|||+++++.|+. .+.+|||++|+..+.+...++++.|+++||.
T Consensus 152 ~g~~v~~a~~~~eal~~l~~~~--~dlvl~D~~mp~~~G~~l~~~ir~~~~~~piI~lt~~~~~~~~~~~~~~G~~~~l~ 229 (254)
T 2ayx_A 152 LGYQCKTANDGVDALNVLSKNH--IDIVLSDVNMPNMDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLS 229 (254)
T ss_dssp HTSEEEEECCSHHHHHHHHHSC--CSEEEEEESSCSSCCHHHHHHHHHHHCCSCEEEEESSTTSHHHHHHHHCCCEEEEE
T ss_pred cCCEEEEECCHHHHHHHHHhCC--CCEEEEcCCCCCCCHHHHHHHHHhcCCCCcEEEEECCCCHHHHHHHHHcCCceEEE
Confidence 3899999999999999999876 999999999999999999999974 4689999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhh
Q 027234 80 KPVRIEELKNIWQHVVRKRKN 100 (226)
Q Consensus 80 KP~~~~~L~~~l~~~~~~~~~ 100 (226)
||++.++|...+++++...+.
T Consensus 230 KP~~~~~L~~~l~~~~~~~~~ 250 (254)
T 2ayx_A 230 KPVTLDVIKQTLTLYAERVRK 250 (254)
T ss_dssp SSCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHhhh
Confidence 999999999999998866543
No 53
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=99.73 E-value=4.7e-17 Score=119.73 Aligned_cols=97 Identities=15% Similarity=0.292 Sum_probs=89.0
Q ss_pred CcE--EEEECCHHHHHHHHHhCCCCceEEEEccCCCCCCHHHHHHHHhc---CCCCcEEEEeccCCHHHHHHHHhCCcce
Q 027234 2 GFS--VTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVGL---EMDLPVIMMCAHGSKEVVMKGVTHDACD 76 (226)
Q Consensus 2 g~~--V~~~~~~~eal~~l~~~~~~~DlVl~D~~mp~~dG~~l~~~l~~---~~~~pvI~ls~~~~~~~~~~a~~~ga~~ 76 (226)
||. |..+.++.+|++.+.... ||+||+|+.||+++|+++++.++. .+.+|||++|+..+.+...+++..|+++
T Consensus 29 ~~~~~v~~~~~~~~a~~~l~~~~--~dlii~D~~l~~~~g~~~~~~lr~~~~~~~~pii~~s~~~~~~~~~~~~~~ga~~ 106 (144)
T 3kht_A 29 DIHCQLEFVDNGAKALYQVQQAK--YDLIILDIGLPIANGFEVMSAVRKPGANQHTPIVILTDNVSDDRAKQCMAAGASS 106 (144)
T ss_dssp TCCEEEEEESSHHHHHHHHTTCC--CSEEEECTTCGGGCHHHHHHHHHSSSTTTTCCEEEEETTCCHHHHHHHHHTTCSE
T ss_pred CCCeeEEEECCHHHHHHHhhcCC--CCEEEEeCCCCCCCHHHHHHHHHhcccccCCCEEEEeCCCCHHHHHHHHHcCCCE
Confidence 555 889999999999998866 999999999999999999999985 4679999999999999999999999999
Q ss_pred EEeCCC-CHHHHHHHHHHHHHHHhh
Q 027234 77 YLTKPV-RIEELKNIWQHVVRKRKN 100 (226)
Q Consensus 77 yl~KP~-~~~~L~~~l~~~~~~~~~ 100 (226)
||.||+ +.++|..+++++++....
T Consensus 107 ~l~Kp~~~~~~l~~~i~~~l~~~~~ 131 (144)
T 3kht_A 107 VVDKSSNNVTDFYGRIYAIFSYWLT 131 (144)
T ss_dssp EEECCTTSHHHHHHHHHHHHHHHHH
T ss_pred EEECCCCcHHHHHHHHHHHHHHHHh
Confidence 999999 999999999999876543
No 54
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}
Probab=99.73 E-value=6.1e-17 Score=120.24 Aligned_cols=101 Identities=18% Similarity=0.414 Sum_probs=91.3
Q ss_pred CcEEEEECCHHHHHHHHHhCCCCceEEEEccCCCCCCHHHHHHHHh-cCCCCcEEEEeccCCHHHHHHHHhCC-cceEEe
Q 027234 2 GFSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVG-LEMDLPVIMMCAHGSKEVVMKGVTHD-ACDYLT 79 (226)
Q Consensus 2 g~~V~~~~~~~eal~~l~~~~~~~DlVl~D~~mp~~dG~~l~~~l~-~~~~~pvI~ls~~~~~~~~~~a~~~g-a~~yl~ 79 (226)
||.|..+.++.+|++.+.+.. +||+||+|+.||+++|+++++.++ ..+.+|||++|+..+.+...+++..| +++||.
T Consensus 27 ~~~v~~~~~~~~a~~~l~~~~-~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~~l~ 105 (151)
T 3kcn_A 27 DFEVTTCESGPEALACIKKSD-PFSVIMVDMRMPGMEGTEVIQKARLISPNSVYLMLTGNQDLTTAMEAVNEGQVFRFLN 105 (151)
T ss_dssp TSEEEEESSHHHHHHHHHHSC-CCSEEEEESCCSSSCHHHHHHHHHHHCSSCEEEEEECGGGHHHHHHHHHHTCCSEEEE
T ss_pred CceEEEeCCHHHHHHHHHcCC-CCCEEEEeCCCCCCcHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHHHcCCeeEEEc
Confidence 789999999999999998763 259999999999999999999997 46789999999999999999999999 999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhhhhh
Q 027234 80 KPVRIEELKNIWQHVVRKRKNERK 103 (226)
Q Consensus 80 KP~~~~~L~~~l~~~~~~~~~~~~ 103 (226)
||++.++|..+++.+++.......
T Consensus 106 KP~~~~~L~~~i~~~l~~~~~~~~ 129 (151)
T 3kcn_A 106 KPCQMSDIKAAINAGIKQYDLVTS 129 (151)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999887665443
No 55
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=99.73 E-value=5.6e-17 Score=118.06 Aligned_cols=98 Identities=19% Similarity=0.312 Sum_probs=87.6
Q ss_pred CCcEEEEECCHHHHHHHHHhCCCCceEEEEccCCCCCCHHHHHHHHhcC--CCCcEEEEeccCCHHHHHHHHhCCcceEE
Q 027234 1 MGFSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVGLE--MDLPVIMMCAHGSKEVVMKGVTHDACDYL 78 (226)
Q Consensus 1 lg~~V~~~~~~~eal~~l~~~~~~~DlVl~D~~mp~~dG~~l~~~l~~~--~~~pvI~ls~~~~~~~~~~a~~~ga~~yl 78 (226)
.||+|..+.++.+|+..+... ..||+||+|+.||+++|+++++.++.. +.+|+|++|+..+.+...++++.|+++||
T Consensus 30 ~g~~v~~~~~~~~a~~~~~~~-~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l 108 (136)
T 3hdv_A 30 RGIDAVGADGAEEARLYLHYQ-KRIGLMITDLRMQPESGLDLIRTIRASERAALSIIVVSGDTDVEEAVDVMHLGVVDFL 108 (136)
T ss_dssp TTCCEEEESSHHHHHHHHHHC-TTEEEEEECSCCSSSCHHHHHHHHHTSTTTTCEEEEEESSCCHHHHHHHHHTTCSEEE
T ss_pred cCceEEEeCCHHHHHHHHHhC-CCCcEEEEeccCCCCCHHHHHHHHHhcCCCCCCEEEEeCCCChHHHHHHHhCCcceEE
Confidence 489999999999999998764 349999999999999999999999853 78999999999999999999999999999
Q ss_pred eCCCCHHHHHHHHHHHHHHHh
Q 027234 79 TKPVRIEELKNIWQHVVRKRK 99 (226)
Q Consensus 79 ~KP~~~~~L~~~l~~~~~~~~ 99 (226)
.||++.++|..+++++..+..
T Consensus 109 ~KP~~~~~l~~~i~~~~~~~~ 129 (136)
T 3hdv_A 109 LKPVDLGKLLELVNKELKIGE 129 (136)
T ss_dssp ESSCCHHHHHHHHHHHHC---
T ss_pred eCCCCHHHHHHHHHHHhcCch
Confidence 999999999999999876554
No 56
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=99.73 E-value=1.7e-17 Score=130.19 Aligned_cols=98 Identities=24% Similarity=0.481 Sum_probs=83.5
Q ss_pred CCc-EEEEECCHHHHHHHHHhC-----------CCCceEEEEccCCCCCCHHHHHHHHhc-----CCCCcEEEEeccC-C
Q 027234 1 MGF-SVTKCNRAEIALDMLRTN-----------KNGYDIVISDVHMPDMDGFKLLELVGL-----EMDLPVIMMCAHG-S 62 (226)
Q Consensus 1 lg~-~V~~~~~~~eal~~l~~~-----------~~~~DlVl~D~~mp~~dG~~l~~~l~~-----~~~~pvI~ls~~~-~ 62 (226)
+|| .|..+.++.+|++.+... ...||+||+|+.||+++|+++++.|+. .+.+|||++|+.. +
T Consensus 84 ~g~~~v~~a~~~~eal~~l~~~~~~~~~~~~~~~~~~dlillD~~lp~~~G~el~~~lr~~~~~~~~~~piI~ls~~~~~ 163 (206)
T 3mm4_A 84 MGVSEVEQCDSGKEALRLVTEGLTQREEQGSVDKLPFDYIFMDCQMPEMDGYEATREIRKVEKSYGVRTPIIAVSGHDPG 163 (206)
T ss_dssp TTCSEEEEESSHHHHHHHHHHHHHHHHHHTCSSCCSCSEEEEESCCSSSCHHHHHHHHHHHHHTTTCCCCEEEEESSCCC
T ss_pred cCCCeeeeeCCHHHHHHHHHhhcccccccccccCCCCCEEEEcCCCCCCCHHHHHHHHHhhhhhcCCCCcEEEEECCCCc
Confidence 477 899999999999999874 113999999999999999999999975 3789999999998 7
Q ss_pred HHHHHHHHhCCcceEEeCCCCHHHHHHHHHHHHHHHhh
Q 027234 63 KEVVMKGVTHDACDYLTKPVRIEELKNIWQHVVRKRKN 100 (226)
Q Consensus 63 ~~~~~~a~~~ga~~yl~KP~~~~~L~~~l~~~~~~~~~ 100 (226)
.+...+++..|+++||.||++ +|..++++++..+..
T Consensus 164 ~~~~~~~~~~Ga~~~l~KP~~--~L~~~i~~~l~~~~~ 199 (206)
T 3mm4_A 164 SEEARETIQAGMDAFLDKSLN--QLANVIREIESKRHL 199 (206)
T ss_dssp HHHHHHHHHHTCSEEEETTCT--THHHHHHHHC-----
T ss_pred HHHHHHHHhCCCCEEEcCcHH--HHHHHHHHHHhhhHH
Confidence 888999999999999999999 899999988765543
No 57
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=99.73 E-value=1.7e-17 Score=133.96 Aligned_cols=96 Identities=27% Similarity=0.415 Sum_probs=90.0
Q ss_pred CCcEEEEECCHHHHHHHHHhCCCCceEEEEccCCCCCCHHHHHHHHhcCCCCcEEEEeccCCHHHHHHHHhCCcceEEeC
Q 027234 1 MGFSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVGLEMDLPVIMMCAHGSKEVVMKGVTHDACDYLTK 80 (226)
Q Consensus 1 lg~~V~~~~~~~eal~~l~~~~~~~DlVl~D~~mp~~dG~~l~~~l~~~~~~pvI~ls~~~~~~~~~~a~~~ga~~yl~K 80 (226)
.||.|..+.++.+|++.+.... ||+||+|+.||+++|+++++.++..+.+|||++|+..+.+...+++..||++||.|
T Consensus 60 ~g~~v~~~~~~~~al~~~~~~~--~DlvllD~~lp~~~G~~l~~~lr~~~~~~iI~lt~~~~~~~~~~a~~~Ga~~yl~K 137 (249)
T 3q9s_A 60 AGYVVDHADSAMNGLIKAREDH--PDLILLDLGLPDFDGGDVVQRLRKNSALPIIVLTARDTVEEKVRLLGLGADDYLIK 137 (249)
T ss_dssp TTCEEEEESSHHHHHHHHHHSC--CSEEEEECCSCHHHHHHHHHHHHTTCCCCEEEEESCCSHHHHHHHHHHTCSEEEES
T ss_pred CCCEEEEeCCHHHHHHHHhcCC--CCEEEEcCCCCCCCHHHHHHHHHcCCCCCEEEEECCCCHHHHHHHHHCCCcEEEEC
Confidence 3789999999999999999876 99999999999999999999998878899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHH
Q 027234 81 PVRIEELKNIWQHVVRKR 98 (226)
Q Consensus 81 P~~~~~L~~~l~~~~~~~ 98 (226)
|++.++|..+++.++++.
T Consensus 138 p~~~~~L~~~i~~~l~~~ 155 (249)
T 3q9s_A 138 PFHPDELLARVKVQLRQR 155 (249)
T ss_dssp SCCHHHHHHHHHHHHCCC
T ss_pred CCCHHHHHHHHHHHHhhc
Confidence 999999999999987643
No 58
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=99.73 E-value=8.2e-17 Score=119.85 Aligned_cols=100 Identities=21% Similarity=0.323 Sum_probs=91.2
Q ss_pred CCcEEEEECCHHHHHHHHHhCCCCceEEEEccCCCCCCHHHHHHHHh-cCCCCcEEEEeccCCHHHHHHHHhCC-cceEE
Q 027234 1 MGFSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVG-LEMDLPVIMMCAHGSKEVVMKGVTHD-ACDYL 78 (226)
Q Consensus 1 lg~~V~~~~~~~eal~~l~~~~~~~DlVl~D~~mp~~dG~~l~~~l~-~~~~~pvI~ls~~~~~~~~~~a~~~g-a~~yl 78 (226)
.||.|..+.++.+|++.+.... ||+||+|+.||+++|+++++.++ ..+.+|||++|+..+......++..| +++||
T Consensus 30 ~g~~v~~~~~~~~a~~~l~~~~--~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~~l 107 (154)
T 2rjn_A 30 LGCNIITFTSPLDALEALKGTS--VQLVISDMRMPEMGGEVFLEQVAKSYPDIERVVISGYADAQATIDAVNRGKISRFL 107 (154)
T ss_dssp TTCEEEEESCHHHHHHHHTTSC--CSEEEEESSCSSSCHHHHHHHHHHHCTTSEEEEEECGGGHHHHHHHHHTTCCSEEE
T ss_pred cCCeEEEeCCHHHHHHHHhcCC--CCEEEEecCCCCCCHHHHHHHHHHhCCCCcEEEEecCCCHHHHHHHHhccchheee
Confidence 4799999999999999999866 99999999999999999999997 45789999999999999999999998 99999
Q ss_pred eCCCCHHHHHHHHHHHHHHHhhhh
Q 027234 79 TKPVRIEELKNIWQHVVRKRKNER 102 (226)
Q Consensus 79 ~KP~~~~~L~~~l~~~~~~~~~~~ 102 (226)
.||++.++|...+++++......+
T Consensus 108 ~kP~~~~~L~~~i~~~~~~~~~~~ 131 (154)
T 2rjn_A 108 LKPWEDEDVFKVVEKGLQLAFLRE 131 (154)
T ss_dssp ESSCCHHHHHHHHHHHHHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999987665433
No 59
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}
Probab=99.73 E-value=1.7e-18 Score=126.25 Aligned_cols=95 Identities=21% Similarity=0.174 Sum_probs=86.6
Q ss_pred CC-cEEEEECCHHHHHHHHHhCCCCceEEEEccCCCCCCHHHHHHHHh-cCCCCcEEEEeccCCHHHHHHHHhCCcceEE
Q 027234 1 MG-FSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVG-LEMDLPVIMMCAHGSKEVVMKGVTHDACDYL 78 (226)
Q Consensus 1 lg-~~V~~~~~~~eal~~l~~~~~~~DlVl~D~~mp~~dG~~l~~~l~-~~~~~pvI~ls~~~~~~~~~~a~~~ga~~yl 78 (226)
.| |.|..+.++.+|++.+.... ||+||+|+.||+++|+++++.++ ..+.+|+|++|+..+.+...++++.|+++||
T Consensus 37 ~g~~~v~~~~~~~~a~~~l~~~~--~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l 114 (135)
T 3snk_A 37 LAIYDVRVSETDDFLKGPPADTR--PGIVILDLGGGDLLGKPGIVEARALWATVPLIAVSDELTSEQTRVLVRMNASDWL 114 (135)
T ss_dssp TSSEEEEEECGGGGGGCCCTTCC--CSEEEEEEETTGGGGSTTHHHHHGGGTTCCEEEEESCCCHHHHHHHHHTTCSEEE
T ss_pred cCCeEEEEeccHHHHHHHHhccC--CCEEEEeCCCCCchHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHcCcHhhc
Confidence 37 99999999999999998766 99999999999999999999998 4468999999999999999999999999999
Q ss_pred eCCCCHHHHHHHHHHHHHH
Q 027234 79 TKPVRIEELKNIWQHVVRK 97 (226)
Q Consensus 79 ~KP~~~~~L~~~l~~~~~~ 97 (226)
.||++.++|...+++++++
T Consensus 115 ~KP~~~~~L~~~i~~~~~~ 133 (135)
T 3snk_A 115 HKPLDGKELLNAVTFHDTG 133 (135)
T ss_dssp ESSCCHHHHHHHHHHTC--
T ss_pred cCCCCHHHHHHHHHHHhcc
Confidence 9999999999999887653
No 60
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=99.73 E-value=5.1e-17 Score=119.38 Aligned_cols=95 Identities=19% Similarity=0.345 Sum_probs=87.0
Q ss_pred Cc--EEEEECCHHHHHHHHHh-----CCCCceEEEEccCCCCCCHHHHHHHHhc-----CCCCcEEEEeccCCHHHHHHH
Q 027234 2 GF--SVTKCNRAEIALDMLRT-----NKNGYDIVISDVHMPDMDGFKLLELVGL-----EMDLPVIMMCAHGSKEVVMKG 69 (226)
Q Consensus 2 g~--~V~~~~~~~eal~~l~~-----~~~~~DlVl~D~~mp~~dG~~l~~~l~~-----~~~~pvI~ls~~~~~~~~~~a 69 (226)
|| .|..+.++.+|++.+.. .. ||+||+|+.||+++|+++++.++. .+.+|+|++|+..+.+....+
T Consensus 33 ~~~~~v~~~~~~~~a~~~l~~~~~~~~~--~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~~~ii~~t~~~~~~~~~~~ 110 (146)
T 3ilh_A 33 HRVEEIQSVTSGNAAINKLNELYAAGRW--PSIICIDINMPGINGWELIDLFKQHFQPMKNKSIVCLLSSSLDPRDQAKA 110 (146)
T ss_dssp CCEEEEEEESSHHHHHHHHHHHHTSSCC--CSEEEEESSCSSSCHHHHHHHHHHHCGGGTTTCEEEEECSSCCHHHHHHH
T ss_pred CCCeeeeecCCHHHHHHHHHHhhccCCC--CCEEEEcCCCCCCCHHHHHHHHHHhhhhccCCCeEEEEeCCCChHHHHHH
Confidence 56 88999999999999987 66 999999999999999999999975 468999999999999999999
Q ss_pred HhCC-cceEEeCCCCHHHHHHHHHHHHHHH
Q 027234 70 VTHD-ACDYLTKPVRIEELKNIWQHVVRKR 98 (226)
Q Consensus 70 ~~~g-a~~yl~KP~~~~~L~~~l~~~~~~~ 98 (226)
+..| +++||.||++.++|..++++...+.
T Consensus 111 ~~~g~~~~~l~KP~~~~~L~~~i~~~~~~~ 140 (146)
T 3ilh_A 111 EASDWVDYYVSKPLTANALNNLYNKVLNEG 140 (146)
T ss_dssp HHCSSCCEEECSSCCHHHHHHHHHHHHCC-
T ss_pred HhcCCcceeeeCCCCHHHHHHHHHHHHHhc
Confidence 9999 9999999999999999999987543
No 61
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=99.73 E-value=1.3e-17 Score=120.05 Aligned_cols=94 Identities=24% Similarity=0.373 Sum_probs=84.3
Q ss_pred CCcEEEEECCHHHHHHHHHhCCCCceEEEEccCCCCCCHHHHHHHHhc---CCCCcEEEEeccCCHHHHHHHHhCCcceE
Q 027234 1 MGFSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVGL---EMDLPVIMMCAHGSKEVVMKGVTHDACDY 77 (226)
Q Consensus 1 lg~~V~~~~~~~eal~~l~~~~~~~DlVl~D~~mp~~dG~~l~~~l~~---~~~~pvI~ls~~~~~~~~~~a~~~ga~~y 77 (226)
.||.|..+.++.+|++.+.... ||+||+|+.||+++|+++++.++. .+.+|+|++|+..+... ..++..|+++|
T Consensus 26 ~g~~v~~~~~~~~a~~~l~~~~--~dlii~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~-~~~~~~g~~~~ 102 (127)
T 3i42_A 26 LGFQADYVMSGTDALHAMSTRG--YDAVFIDLNLPDTSGLALVKQLRALPMEKTSKFVAVSGFAKNDL-GKEACELFDFY 102 (127)
T ss_dssp TTEEEEEESSHHHHHHHHHHSC--CSEEEEESBCSSSBHHHHHHHHHHSCCSSCCEEEEEECC-CTTC-CHHHHHHCSEE
T ss_pred cCCCEEEECCHHHHHHHHHhcC--CCEEEEeCCCCCCCHHHHHHHHHhhhccCCCCEEEEECCcchhH-HHHHHHhhHHh
Confidence 4899999999999999999876 999999999999999999999984 57899999999988877 88999999999
Q ss_pred EeCCCCHHHHHHHHHHHHHH
Q 027234 78 LTKPVRIEELKNIWQHVVRK 97 (226)
Q Consensus 78 l~KP~~~~~L~~~l~~~~~~ 97 (226)
|.||++.++|...+++..+.
T Consensus 103 l~KP~~~~~L~~~i~~~~~~ 122 (127)
T 3i42_A 103 LEKPIDIASLEPILQSIEGH 122 (127)
T ss_dssp EESSCCHHHHHHHHHHHC--
T ss_pred eeCCCCHHHHHHHHHHhhcc
Confidence 99999999999999987654
No 62
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=99.73 E-value=7.4e-17 Score=118.08 Aligned_cols=97 Identities=25% Similarity=0.323 Sum_probs=89.4
Q ss_pred CCcE-EEEECCHHHHHHHHHhCCCCceEEEEccCCCCCCHHHHHHHHhc---CCCCcEEEEeccCCHHHHHHHHhCCcce
Q 027234 1 MGFS-VTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVGL---EMDLPVIMMCAHGSKEVVMKGVTHDACD 76 (226)
Q Consensus 1 lg~~-V~~~~~~~eal~~l~~~~~~~DlVl~D~~mp~~dG~~l~~~l~~---~~~~pvI~ls~~~~~~~~~~a~~~ga~~ 76 (226)
.||. |..+.++.+|++.+.... ||+||+|+.||+++|+++++.++. .+.+|||++|+..+......++..|+++
T Consensus 32 ~~~~~v~~~~~~~~a~~~l~~~~--~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~ 109 (143)
T 3cnb_A 32 FPYAKIKIAYNPFDAGDLLHTVK--PDVVMLDLMMVGMDGFSICHRIKSTPATANIIVIAMTGALTDDNVSRIVALGAET 109 (143)
T ss_dssp CTTCEEEEECSHHHHHHHHHHTC--CSEEEEETTCTTSCHHHHHHHHHTSTTTTTSEEEEEESSCCHHHHHHHHHTTCSE
T ss_pred cCccEEEEECCHHHHHHHHHhcC--CCEEEEecccCCCcHHHHHHHHHhCccccCCcEEEEeCCCCHHHHHHHHhcCCcE
Confidence 4788 899999999999999876 999999999999999999999975 4679999999999999999999999999
Q ss_pred EEeCCCCHHHHHHHHHHHHHHHh
Q 027234 77 YLTKPVRIEELKNIWQHVVRKRK 99 (226)
Q Consensus 77 yl~KP~~~~~L~~~l~~~~~~~~ 99 (226)
||.||++.++|...+++++++..
T Consensus 110 ~l~kP~~~~~l~~~i~~~~~~~~ 132 (143)
T 3cnb_A 110 CFGKPLNFTLLEKTIKQLVEQKK 132 (143)
T ss_dssp EEESSCCHHHHHHHHHHHHHTTC
T ss_pred EEeCCCCHHHHHHHHHHHHHhhc
Confidence 99999999999999999987544
No 63
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=99.73 E-value=7.1e-18 Score=122.45 Aligned_cols=97 Identities=18% Similarity=0.212 Sum_probs=86.2
Q ss_pred CCcEEE-EECCHHHHHHHHHhCCCCceEEEEccCCCCCCHHHHHHHHh-cCCCCcEEEEeccCCHHHHHHHHhCCcceEE
Q 027234 1 MGFSVT-KCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVG-LEMDLPVIMMCAHGSKEVVMKGVTHDACDYL 78 (226)
Q Consensus 1 lg~~V~-~~~~~~eal~~l~~~~~~~DlVl~D~~mp~~dG~~l~~~l~-~~~~~pvI~ls~~~~~~~~~~a~~~ga~~yl 78 (226)
.||.+. .+.++.+|++.+.... ||+||+|+.||+++|+++++.++ ..+.+|+|++|+..+.+...++++.|+++||
T Consensus 24 ~g~~v~~~~~~~~~a~~~~~~~~--~dlii~d~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l 101 (134)
T 3f6c_A 24 NDIEILAELTEGGSAVQRVETLK--PDIVIIDVDIPGVNGIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFV 101 (134)
T ss_dssp TTEEEEEEESSSTTHHHHHHHHC--CSEEEEETTCSSSCHHHHHHHHHHTTCCSEEEEEECC---CTHHHHHHTTCSEEE
T ss_pred CCcEEEEEcCCHHHHHHHHHhcC--CCEEEEecCCCCCChHHHHHHHHhcCCCCeEEEEeCCCChHHHHHHHHhCCCEEE
Confidence 378887 8999999999999876 99999999999999999999998 5578999999999998899999999999999
Q ss_pred eCCCCHHHHHHHHHHHHHHHh
Q 027234 79 TKPVRIEELKNIWQHVVRKRK 99 (226)
Q Consensus 79 ~KP~~~~~L~~~l~~~~~~~~ 99 (226)
.||++.++|..++++++++..
T Consensus 102 ~kp~~~~~l~~~i~~~~~~~~ 122 (134)
T 3f6c_A 102 SKKEGMNNIIAAIEAAKNGYC 122 (134)
T ss_dssp EGGGCTHHHHHHHHHHHTTCC
T ss_pred eCCCCHHHHHHHHHHHHCCCE
Confidence 999999999999999886543
No 64
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=99.73 E-value=8.3e-17 Score=117.15 Aligned_cols=96 Identities=17% Similarity=0.302 Sum_probs=87.9
Q ss_pred Cc--EEEEECCHHHHHHHHHh-------CCCCceEEEEccCCCCCCHHHHHHHHhcC---CCCcEEEEeccCCHHHHHHH
Q 027234 2 GF--SVTKCNRAEIALDMLRT-------NKNGYDIVISDVHMPDMDGFKLLELVGLE---MDLPVIMMCAHGSKEVVMKG 69 (226)
Q Consensus 2 g~--~V~~~~~~~eal~~l~~-------~~~~~DlVl~D~~mp~~dG~~l~~~l~~~---~~~pvI~ls~~~~~~~~~~a 69 (226)
|| .|..+.++.+|++.+.. .. ||+||+|+.||+++|+++++.++.. +.+|+|++|+..+.+...++
T Consensus 26 ~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~--~dlvi~d~~~~~~~g~~~~~~l~~~~~~~~~pii~ls~~~~~~~~~~~ 103 (140)
T 1k68_A 26 TVPHEVVTVRDGMEAMAYLRQEGEYANASR--PDLILLXLNLPKKDGREVLAEIKSDPTLKRIPVVVLSTSINEDDIFHS 103 (140)
T ss_dssp SSCCEEEEECSHHHHHHHHTTCGGGGSCCC--CSEEEECSSCSSSCHHHHHHHHHHSTTGGGSCEEEEESCCCHHHHHHH
T ss_pred CCCceEEEECCHHHHHHHHHcccccccCCC--CcEEEEecCCCcccHHHHHHHHHcCcccccccEEEEecCCcHHHHHHH
Confidence 56 89999999999999987 45 9999999999999999999999854 57999999999999999999
Q ss_pred HhCCcceEEeCCCCHHHHHHHHHHHHHHHh
Q 027234 70 VTHDACDYLTKPVRIEELKNIWQHVVRKRK 99 (226)
Q Consensus 70 ~~~ga~~yl~KP~~~~~L~~~l~~~~~~~~ 99 (226)
++.|+++||.||++.++|...++++++...
T Consensus 104 ~~~g~~~~l~kP~~~~~l~~~i~~~~~~~~ 133 (140)
T 1k68_A 104 YDLHVNCYITKSANLSQLFQIVKGIEEFWL 133 (140)
T ss_dssp HHTTCSEEEECCSSHHHHHHHHHHHHHHHH
T ss_pred HHhchhheecCCCCHHHHHHHHHHHHHHHc
Confidence 999999999999999999999999986543
No 65
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=99.72 E-value=9.5e-17 Score=119.23 Aligned_cols=97 Identities=24% Similarity=0.370 Sum_probs=86.0
Q ss_pred Cc--EEEEECCHHHHHHHHHh-------CCCCceEEEEccCCCCCCHHHHHHHHhc---CCCCcEEEEeccCCHHHHHHH
Q 027234 2 GF--SVTKCNRAEIALDMLRT-------NKNGYDIVISDVHMPDMDGFKLLELVGL---EMDLPVIMMCAHGSKEVVMKG 69 (226)
Q Consensus 2 g~--~V~~~~~~~eal~~l~~-------~~~~~DlVl~D~~mp~~dG~~l~~~l~~---~~~~pvI~ls~~~~~~~~~~a 69 (226)
|| .|..+.++.+|++.+.. ....||+||+|+.||+++|+++++.++. .+.+|||++|+..+.+...++
T Consensus 28 g~~~~v~~~~~~~~al~~l~~~~~~~~~~~~~~dliilD~~l~~~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~~ 107 (152)
T 3heb_A 28 GVNNEIIAFTDGTSALNYLFGDDKSGRVSAGRAQLVLLDLNLPDMTGIDILKLVKENPHTRRSPVVILTTTDDQREIQRC 107 (152)
T ss_dssp TCCCCEEEESSHHHHHHHHHCTTSSSGGGTTCBEEEEECSBCSSSBHHHHHHHHHHSTTTTTSCEEEEESCCCHHHHHHH
T ss_pred CCcceEEEeCCHHHHHHHHhccccccccccCCCCEEEEeCCCCCCcHHHHHHHHHhcccccCCCEEEEecCCCHHHHHHH
Confidence 56 79999999999999961 1134999999999999999999999975 367899999999999999999
Q ss_pred HhCCcceEEeCCCCHHHHHHHHHHHHHHH
Q 027234 70 VTHDACDYLTKPVRIEELKNIWQHVVRKR 98 (226)
Q Consensus 70 ~~~ga~~yl~KP~~~~~L~~~l~~~~~~~ 98 (226)
++.|+++||.||++.++|..+++++.+..
T Consensus 108 ~~~g~~~~l~KP~~~~~l~~~i~~~~~~~ 136 (152)
T 3heb_A 108 YDLGANVYITKPVNYENFANAIRQLGLFF 136 (152)
T ss_dssp HHTTCSEEEECCSSHHHHHHHHHHHHHHH
T ss_pred HHCCCcEEEeCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999986543
No 66
>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Probab=99.72 E-value=1.2e-17 Score=120.06 Aligned_cols=95 Identities=26% Similarity=0.436 Sum_probs=86.9
Q ss_pred CCcEEEEECCHHHHHHHHHhCCCCceEEEEccCCCCCCHHHHHHHHhcC---CCCcEEEEeccCCHHHHHHHHhCCcceE
Q 027234 1 MGFSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVGLE---MDLPVIMMCAHGSKEVVMKGVTHDACDY 77 (226)
Q Consensus 1 lg~~V~~~~~~~eal~~l~~~~~~~DlVl~D~~mp~~dG~~l~~~l~~~---~~~pvI~ls~~~~~~~~~~a~~~ga~~y 77 (226)
.||.|..+.++.+|++.+.... ||+||+|+.||+++|+++++.++.. +.+|+|++|+..+.+...++++.|+++|
T Consensus 25 ~g~~v~~~~~~~~a~~~~~~~~--~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~ga~~~ 102 (127)
T 2jba_A 25 NGFQPVEAEDYDSAVNQLNEPW--PDLILLAWMLPGGSGIQFIKHLRRESMTRDIPVVMLTARGEEEDRVRGLETGADDC 102 (127)
T ss_dssp TTCEEEEECSHHHHHTTCSSSC--CSEEEEESEETTEEHHHHHHHHHTSTTTTTSCEEEEEETTHHHHHHTTCCCSCSEE
T ss_pred CCceEEEeCCHHHHHHHHhccC--CCEEEEecCCCCCCHHHHHHHHHhCcccCCCCEEEEeCCCCHHHHHHHHhcCCCeE
Confidence 3789999999999999988765 9999999999999999999999854 6799999999999999999999999999
Q ss_pred EeCCCCHHHHHHHHHHHHHH
Q 027234 78 LTKPVRIEELKNIWQHVVRK 97 (226)
Q Consensus 78 l~KP~~~~~L~~~l~~~~~~ 97 (226)
|.||++.++|...++++++.
T Consensus 103 l~Kp~~~~~l~~~i~~~~~~ 122 (127)
T 2jba_A 103 ITKPFSPKELVARIKAVMRR 122 (127)
T ss_dssp EEESCCHHHHHHHHHHHHHC
T ss_pred EeCCCCHHHHHHHHHHHHhc
Confidence 99999999999999988753
No 67
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=99.72 E-value=2.1e-17 Score=121.02 Aligned_cols=99 Identities=22% Similarity=0.345 Sum_probs=81.3
Q ss_pred cEEEEECCHHHHHHHHHhCCCCceEEEEccCCCCCCHHHHHHHHhcC---CCCcEEEEeccCCHHHHHHHHhCCcceEEe
Q 027234 3 FSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVGLE---MDLPVIMMCAHGSKEVVMKGVTHDACDYLT 79 (226)
Q Consensus 3 ~~V~~~~~~~eal~~l~~~~~~~DlVl~D~~mp~~dG~~l~~~l~~~---~~~pvI~ls~~~~~~~~~~a~~~ga~~yl~ 79 (226)
|.|..+.++.+|++.+.+.. ||+||+|+.||+++|+++++.++.. +.+|+|++|+..+.+...++++.|+++||.
T Consensus 27 ~~v~~~~~~~~a~~~~~~~~--~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~ 104 (140)
T 3n53_A 27 YLVIESKNEKEALEQIDHHH--PDLVILDMDIIGENSPNLCLKLKRSKGLKNVPLILLFSSEHKEAIVNGLHSGADDYLT 104 (140)
T ss_dssp SEEEEESSHHHHHHHHHHHC--CSEEEEETTC------CHHHHHHTSTTCTTCCEEEEECC----CTTTTTTCCCSEEEE
T ss_pred ceEEEeCCHHHHHHHHhcCC--CCEEEEeCCCCCCcHHHHHHHHHcCcccCCCCEEEEecCCCHHHHHHHHhcCCCeeee
Confidence 78899999999999999876 9999999999999999999999854 689999999999888899999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhhhhh
Q 027234 80 KPVRIEELKNIWQHVVRKRKNERK 103 (226)
Q Consensus 80 KP~~~~~L~~~l~~~~~~~~~~~~ 103 (226)
||++.++|..++++++++......
T Consensus 105 KP~~~~~l~~~i~~~~~~~~~~~~ 128 (140)
T 3n53_A 105 KPFNRNDLLSRIEIHLRTQNYYSD 128 (140)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhhHHHHHH
Confidence 999999999999999987766544
No 68
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=99.72 E-value=6.5e-17 Score=121.04 Aligned_cols=95 Identities=24% Similarity=0.373 Sum_probs=86.5
Q ss_pred CCcEEE-EECCHHHHHHHHHhCCCCceEEEEccCCCCCCHHHHHHHHh-cCCCCcEEEEeccCCHHHHHHHHhCCcceEE
Q 027234 1 MGFSVT-KCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVG-LEMDLPVIMMCAHGSKEVVMKGVTHDACDYL 78 (226)
Q Consensus 1 lg~~V~-~~~~~~eal~~l~~~~~~~DlVl~D~~mp~~dG~~l~~~l~-~~~~~pvI~ls~~~~~~~~~~a~~~ga~~yl 78 (226)
.||.|. .+.++.+|++.+......||+||+|+.||+++|+++++.|+ ..+.+|||++|+..+.+...++++.|+++||
T Consensus 59 ~g~~v~~~~~~~~~al~~l~~~~~~~dliilD~~l~~~~g~~~~~~lr~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l 138 (157)
T 3hzh_A 59 EGFNIIDTAADGEEAVIKYKNHYPNIDIVTLXITMPKMDGITCLSNIMEFDKNARVIMISALGKEQLVKDCLIKGAKTFI 138 (157)
T ss_dssp TTCEEEEEESSHHHHHHHHHHHGGGCCEEEECSSCSSSCHHHHHHHHHHHCTTCCEEEEESCCCHHHHHHHHHTTCSEEE
T ss_pred CCCeEEEEECCHHHHHHHHHhcCCCCCEEEEeccCCCccHHHHHHHHHhhCCCCcEEEEeccCcHHHHHHHHHcCCCEEE
Confidence 378988 99999999999988611289999999999999999999997 4678999999999999999999999999999
Q ss_pred eCCCCHHHHHHHHHHHH
Q 027234 79 TKPVRIEELKNIWQHVV 95 (226)
Q Consensus 79 ~KP~~~~~L~~~l~~~~ 95 (226)
.||++.++|...+++++
T Consensus 139 ~KP~~~~~l~~~i~~~l 155 (157)
T 3hzh_A 139 VKPLDRAKVLQRVMSVF 155 (157)
T ss_dssp ESSCCHHHHHHHHHHTT
T ss_pred eCCCCHHHHHHHHHHHh
Confidence 99999999999998765
No 69
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=99.72 E-value=1.3e-16 Score=117.53 Aligned_cols=95 Identities=21% Similarity=0.457 Sum_probs=87.6
Q ss_pred Cc--EEEEECCHHHHHHHHHh----------CCCCceEEEEccCCCCCCHHHHHHHHhcC---CCCcEEEEeccCCHHHH
Q 027234 2 GF--SVTKCNRAEIALDMLRT----------NKNGYDIVISDVHMPDMDGFKLLELVGLE---MDLPVIMMCAHGSKEVV 66 (226)
Q Consensus 2 g~--~V~~~~~~~eal~~l~~----------~~~~~DlVl~D~~mp~~dG~~l~~~l~~~---~~~pvI~ls~~~~~~~~ 66 (226)
|| .|..+.++.+|++.+.. .. ||+||+|+.||+++|+++++.++.. +.+|+|++|+..+.+..
T Consensus 30 g~~~~v~~~~~~~~al~~l~~~~~~~~~~~~~~--~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~t~~~~~~~~ 107 (149)
T 1k66_A 30 GVVNPIYRCITGDQALDFLYQTGSYCNPDIAPR--PAVILLDLNLPGTDGREVLQEIKQDEVLKKIPVVIMTTSSNPKDI 107 (149)
T ss_dssp TBCSCEEEECSHHHHHHHHHTCCSSSCGGGCCC--CSEEEECSCCSSSCHHHHHHHHTTSTTGGGSCEEEEESCCCHHHH
T ss_pred CCCceEEEECCHHHHHHHHHhcccccCcccCCC--CcEEEEECCCCCCCHHHHHHHHHhCcccCCCeEEEEeCCCCHHHH
Confidence 66 89999999999999986 45 9999999999999999999999854 57999999999999999
Q ss_pred HHHHhCCcceEEeCCCCHHHHHHHHHHHHHHH
Q 027234 67 MKGVTHDACDYLTKPVRIEELKNIWQHVVRKR 98 (226)
Q Consensus 67 ~~a~~~ga~~yl~KP~~~~~L~~~l~~~~~~~ 98 (226)
..+++.|+++||.||++.++|...++++++..
T Consensus 108 ~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~ 139 (149)
T 1k66_A 108 EICYSYSISSYIVKPLEIDRLTETVQTFIKYW 139 (149)
T ss_dssp HHHHHTTCSEEEECCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCEEEeCCCCHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999998654
No 70
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=99.72 E-value=7.8e-17 Score=138.17 Aligned_cols=96 Identities=26% Similarity=0.551 Sum_probs=89.8
Q ss_pred CcEEEEECCHHHHHHHHHhCCCCceEEEEccCCCCCCHHHHHHHHh-cCCCCcEEEEeccCCHHHHHHHHhCCcceEEeC
Q 027234 2 GFSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVG-LEMDLPVIMMCAHGSKEVVMKGVTHDACDYLTK 80 (226)
Q Consensus 2 g~~V~~~~~~~eal~~l~~~~~~~DlVl~D~~mp~~dG~~l~~~l~-~~~~~pvI~ls~~~~~~~~~~a~~~ga~~yl~K 80 (226)
||.|..+.++.+|++.+.... ||+||+|+.||++||+++++.++ ..+.+|||++|++.+.+...++++.||++||.|
T Consensus 24 g~~v~~a~~~~eal~~l~~~~--~DlvllD~~mp~~dG~ell~~lr~~~~~~pvIvlT~~~~~~~~~~a~~~Ga~dyl~K 101 (387)
T 1ny5_A 24 GIKVESAERGKEAYKLLSEKH--FNVVLLDLLLPDVNGLEILKWIKERSPETEVIVITGHGTIKTAVEAMKMGAYDFLTK 101 (387)
T ss_dssp TCEEEEESSHHHHHHHHHHSC--CSEEEEESBCSSSBHHHHHHHHHHHCTTSEEEEEEETTCHHHHHHHHTTTCCEEEEE
T ss_pred CCEEEEECCHHHHHHHHHhCC--CCEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHhcCceEEecC
Confidence 799999999999999999876 99999999999999999999997 467899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHh
Q 027234 81 PVRIEELKNIWQHVVRKRK 99 (226)
Q Consensus 81 P~~~~~L~~~l~~~~~~~~ 99 (226)
|++.++|...+++++..+.
T Consensus 102 P~~~~~L~~~i~~~l~~~~ 120 (387)
T 1ny5_A 102 PCMLEEIELTINKAIEHRK 120 (387)
T ss_dssp SCCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHH
Confidence 9999999999999886544
No 71
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=99.72 E-value=1.1e-16 Score=116.81 Aligned_cols=98 Identities=22% Similarity=0.375 Sum_probs=90.0
Q ss_pred CcEEE-EECCHHHHHHHHHhCCCCceEEEEccCCC-CCCHHHHHHHHhcCCCCcEEEEeccCCHHHHHHHHhCCcceEEe
Q 027234 2 GFSVT-KCNRAEIALDMLRTNKNGYDIVISDVHMP-DMDGFKLLELVGLEMDLPVIMMCAHGSKEVVMKGVTHDACDYLT 79 (226)
Q Consensus 2 g~~V~-~~~~~~eal~~l~~~~~~~DlVl~D~~mp-~~dG~~l~~~l~~~~~~pvI~ls~~~~~~~~~~a~~~ga~~yl~ 79 (226)
||+|. .+.++.+|++.+.... ||+||+|+.|| +++|+++++.++..+.+|||++|+..+......++..|+++||.
T Consensus 33 g~~v~~~~~~~~~a~~~~~~~~--~dlii~d~~~~~~~~g~~~~~~l~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~ 110 (140)
T 3cg0_A 33 GYDVLGVFDNGEEAVRCAPDLR--PDIALVDIMLCGALDGVETAARLAAGCNLPIIFITSSQDVETFQRAKRVNPFGYLA 110 (140)
T ss_dssp TCEEEEEESSHHHHHHHHHHHC--CSEEEEESSCCSSSCHHHHHHHHHHHSCCCEEEEECCCCHHHHHHHHTTCCSEEEE
T ss_pred CCeeEEEECCHHHHHHHHHhCC--CCEEEEecCCCCCCCHHHHHHHHHhCCCCCEEEEecCCCHHHHHHHHhcCCCEEEe
Confidence 78998 5999999999999876 99999999998 79999999999854889999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhhh
Q 027234 80 KPVRIEELKNIWQHVVRKRKNE 101 (226)
Q Consensus 80 KP~~~~~L~~~l~~~~~~~~~~ 101 (226)
||++.++|...+++++++....
T Consensus 111 kp~~~~~l~~~i~~~~~~~~~~ 132 (140)
T 3cg0_A 111 KPVAADTLHRSIEMAIHKKKLE 132 (140)
T ss_dssp ESCCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHhccccC
Confidence 9999999999999998765543
No 72
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=99.72 E-value=2.4e-17 Score=121.61 Aligned_cols=95 Identities=16% Similarity=0.273 Sum_probs=86.8
Q ss_pred C-cEEEEECCHHHHHHHHHh--CCCCceEEEEccCCCCCCHHHHHHHHh-cCCCCcEEEEeccCCHHHHHHHHhCCcceE
Q 027234 2 G-FSVTKCNRAEIALDMLRT--NKNGYDIVISDVHMPDMDGFKLLELVG-LEMDLPVIMMCAHGSKEVVMKGVTHDACDY 77 (226)
Q Consensus 2 g-~~V~~~~~~~eal~~l~~--~~~~~DlVl~D~~mp~~dG~~l~~~l~-~~~~~pvI~ls~~~~~~~~~~a~~~ga~~y 77 (226)
| |.|..+.++.+++..+.. .. ||+||+|+.||+++|+++++.++ ..+.+|||++|+..+.+...++++.||++|
T Consensus 44 g~~~v~~~~~~~~~~~~~~~~~~~--~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~ga~~~ 121 (146)
T 4dad_A 44 GRYRVTRTVGRAAQIVQRTDGLDA--FDILMIDGAALDTAELAAIEKLSRLHPGLTCLLVTTDASSQTLLDAMRAGVRDV 121 (146)
T ss_dssp CSCEEEEECCCHHHHTTCHHHHTT--CSEEEEECTTCCHHHHHHHHHHHHHCTTCEEEEEESCCCHHHHHHHHTTTEEEE
T ss_pred CCeEEEEeCCHHHHHHHHHhcCCC--CCEEEEeCCCCCccHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHhCCcee
Confidence 5 999999999998877654 66 99999999999999999999997 557899999999999999999999999999
Q ss_pred EeCCCCHHHHHHHHHHHHHHH
Q 027234 78 LTKPVRIEELKNIWQHVVRKR 98 (226)
Q Consensus 78 l~KP~~~~~L~~~l~~~~~~~ 98 (226)
|.||++.++|..++++++++.
T Consensus 122 l~Kp~~~~~L~~~i~~~~~~~ 142 (146)
T 4dad_A 122 LRWPLEPRALDDALKRAAAQC 142 (146)
T ss_dssp EESSCCHHHHHHHHHHHHHTC
T ss_pred EcCCCCHHHHHHHHHHHHhhh
Confidence 999999999999999988653
No 73
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Probab=99.71 E-value=8.9e-17 Score=127.01 Aligned_cols=96 Identities=30% Similarity=0.518 Sum_probs=89.4
Q ss_pred CCcEEEEECCHHHHHHHHHhCCCCceEEEEccCCCCCCHHHHHHHHhc-CCCCcEEEEeccCCHHHHHHHHhCCcceEEe
Q 027234 1 MGFSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVGL-EMDLPVIMMCAHGSKEVVMKGVTHDACDYLT 79 (226)
Q Consensus 1 lg~~V~~~~~~~eal~~l~~~~~~~DlVl~D~~mp~~dG~~l~~~l~~-~~~~pvI~ls~~~~~~~~~~a~~~ga~~yl~ 79 (226)
.||.|..+.++.+|++.+.... ||+||+|+.||+++|+++++.++. .+.+|||++|+..+.+....++..||++||.
T Consensus 25 ~g~~v~~~~~~~~a~~~~~~~~--~dlvllD~~l~~~~g~~~~~~lr~~~~~~~ii~ls~~~~~~~~~~~~~~ga~~~l~ 102 (225)
T 1kgs_A 25 EMFTVDVCYDGEEGMYMALNEP--FDVVILDIMLPVHDGWEILKSMRESGVNTPVLMLTALSDVEYRVKGLNMGADDYLP 102 (225)
T ss_dssp TTCEEEEESSHHHHHHHHHHSC--CSEEEEESCCSSSCHHHHHHHHHHTTCCCCEEEEESSCHHHHHHHTCCCCCSEEEE
T ss_pred CCCEEEEECCHHHHHHHHhcCC--CCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEEEeCCCCHHHHHHHHhCCccEEEe
Confidence 3799999999999999999876 999999999999999999999984 5789999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHH
Q 027234 80 KPVRIEELKNIWQHVVRKR 98 (226)
Q Consensus 80 KP~~~~~L~~~l~~~~~~~ 98 (226)
||++.++|...++.++++.
T Consensus 103 Kp~~~~~l~~~i~~~~~~~ 121 (225)
T 1kgs_A 103 KPFDLRELIARVRALIRRK 121 (225)
T ss_dssp SSCCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhhc
Confidence 9999999999999998764
No 74
>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1}
Probab=99.71 E-value=5.3e-17 Score=118.76 Aligned_cols=95 Identities=26% Similarity=0.397 Sum_probs=84.3
Q ss_pred CCcEEEEECCHHHHHHHHHhCCCCceEEEEccCCCCCCHHHHHHHHhcC---CCCcEEEEeccCCHHHHHHHHhCCcceE
Q 027234 1 MGFSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVGLE---MDLPVIMMCAHGSKEVVMKGVTHDACDY 77 (226)
Q Consensus 1 lg~~V~~~~~~~eal~~l~~~~~~~DlVl~D~~mp~~dG~~l~~~l~~~---~~~pvI~ls~~~~~~~~~~a~~~ga~~y 77 (226)
.||.|..+.++.+|++.+.... ||+||+|+.||+++|+++++.++.. +.+|||++|+..+......++..|+++|
T Consensus 26 ~g~~v~~~~~~~~al~~l~~~~--~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~ls~~~~~~~~~~~~~~~~~~~ 103 (138)
T 3c3m_A 26 GGYRPITAFSGEECLEALNATP--PDLVLLDIMMEPMDGWETLERIKTDPATRDIPVLMLTAKPLTPEEANEYGSYIEDY 103 (138)
T ss_dssp TTCEEEEESSHHHHHHHHHHSC--CSEEEEESCCSSSCHHHHHHHHHHSTTTTTSCEEEEESSCCCHHHHHHTTTTCSEE
T ss_pred cCceEEEeCCHHHHHHHHhccC--CCEEEEeCCCCCCCHHHHHHHHHcCcccCCCCEEEEECCCChHHHHHHhhcCHhhe
Confidence 4799999999999999999876 9999999999999999999999743 4789999999877666667778889999
Q ss_pred EeCCCCHHHHHHHHHHHHHH
Q 027234 78 LTKPVRIEELKNIWQHVVRK 97 (226)
Q Consensus 78 l~KP~~~~~L~~~l~~~~~~ 97 (226)
|.||++.++|...+++++..
T Consensus 104 l~KP~~~~~L~~~i~~~~~~ 123 (138)
T 3c3m_A 104 ILKPTTHHQLYEAIEHVLAR 123 (138)
T ss_dssp EECCCHHHHHHHHHHHHHSC
T ss_pred EeCCCCHHHHHHHHHHHHHH
Confidence 99999999999999988754
No 75
>2jk1_A HUPR, hydrogenase transcriptional regulatory protein HU; nucleotide-binding, transcription regulation; 2.10A {Rhodobacter capsulatus} PDB: 2vui_B 2vuh_B
Probab=99.71 E-value=1.4e-16 Score=116.56 Aligned_cols=95 Identities=23% Similarity=0.309 Sum_probs=85.3
Q ss_pred cEEEEECCHHHHHHHHHhCCCCceEEEEccCCCCCCHHHHHHHHh-cCCCCcEEEEeccCCHHHHHHHHhC-CcceEEeC
Q 027234 3 FSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVG-LEMDLPVIMMCAHGSKEVVMKGVTH-DACDYLTK 80 (226)
Q Consensus 3 ~~V~~~~~~~eal~~l~~~~~~~DlVl~D~~mp~~dG~~l~~~l~-~~~~~pvI~ls~~~~~~~~~~a~~~-ga~~yl~K 80 (226)
|.|..+.++.+|++.+.... ||+||+|+.||+++|+++++.++ ..+.+|+|++|+..+......++.. |+++||.|
T Consensus 25 ~~v~~~~~~~~a~~~~~~~~--~dlvl~D~~lp~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~~ga~~~l~K 102 (139)
T 2jk1_A 25 FDVLTAQGAEAAIAILEEEW--VQVIICDQRMPGRTGVDFLTEVRERWPETVRIIITGYTDSASMMAAINDAGIHQFLTK 102 (139)
T ss_dssp SCEEEESSHHHHHHHHHHSC--EEEEEEESCCSSSCHHHHHHHHHHHCTTSEEEEEESCTTCHHHHHHHHHTTCCEEEES
T ss_pred ceEEEcCCHHHHHHHHhcCC--CCEEEEeCCCCCCcHHHHHHHHHHhCCCCcEEEEeCCCChHHHHHHHHhhchhhhccC
Confidence 77889999999999998866 99999999999999999999997 4578999999999888888888875 59999999
Q ss_pred CCCHHHHHHHHHHHHHHHh
Q 027234 81 PVRIEELKNIWQHVVRKRK 99 (226)
Q Consensus 81 P~~~~~L~~~l~~~~~~~~ 99 (226)
|++.++|...++++++...
T Consensus 103 P~~~~~L~~~i~~~~~~~~ 121 (139)
T 2jk1_A 103 PWHPEQLLSSARNAARMFT 121 (139)
T ss_dssp SCCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHH
Confidence 9999999999999886544
No 76
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=99.71 E-value=7.4e-17 Score=118.27 Aligned_cols=99 Identities=24% Similarity=0.386 Sum_probs=87.9
Q ss_pred CCcEEEEECCHHHHHHHHHhCCCCceEEEEccCCCCCCHHHHHHHHh-cCCCCcEEEEeccCCHHHHHHHHhCCcceEEe
Q 027234 1 MGFSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVG-LEMDLPVIMMCAHGSKEVVMKGVTHDACDYLT 79 (226)
Q Consensus 1 lg~~V~~~~~~~eal~~l~~~~~~~DlVl~D~~mp~~dG~~l~~~l~-~~~~~pvI~ls~~~~~~~~~~a~~~ga~~yl~ 79 (226)
.||+|..+.++.+|++.+.... ||+||+|+ ||+++|+++++.++ ..+.+|+|++|+..+.+....++..|+++||.
T Consensus 27 ~g~~v~~~~~~~~a~~~l~~~~--~dlvi~d~-~~~~~g~~~~~~l~~~~~~~pii~ls~~~~~~~~~~~~~~g~~~~l~ 103 (142)
T 2qxy_A 27 DGFNVIWAKNEQEAFTFLRREK--IDLVFVDV-FEGEESLNLIRRIREEFPDTKVAVLSAYVDKDLIINSVKAGAVDYIL 103 (142)
T ss_dssp GTCEEEEESSHHHHHHHHTTSC--CSEEEEEC-TTTHHHHHHHHHHHHHCTTCEEEEEESCCCHHHHHHHHHHTCSCEEE
T ss_pred CCCEEEEECCHHHHHHHHhccC--CCEEEEeC-CCCCcHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCcceeEe
Confidence 3799999999999999999866 99999999 99999999999997 45689999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhhhh
Q 027234 80 KPVRIEELKNIWQHVVRKRKNER 102 (226)
Q Consensus 80 KP~~~~~L~~~l~~~~~~~~~~~ 102 (226)
||++.++|...+++++++.....
T Consensus 104 kP~~~~~l~~~i~~~~~~~~~~~ 126 (142)
T 2qxy_A 104 KPFRLDYLLERVKKIISSTPRVT 126 (142)
T ss_dssp SSCCHHHHHHHHHHHHHC-----
T ss_pred CCCCHHHHHHHHHHHHhhccccc
Confidence 99999999999999987654433
No 77
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=99.71 E-value=1.2e-16 Score=119.12 Aligned_cols=98 Identities=33% Similarity=0.542 Sum_probs=90.4
Q ss_pred CCcEEEEECCHHHHHHHHHhCCCCceEEEEccCCCCCCHHHHHHHHh-cCCCCcEEEEeccCCHHHHHHHHhCCcceEEe
Q 027234 1 MGFSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVG-LEMDLPVIMMCAHGSKEVVMKGVTHDACDYLT 79 (226)
Q Consensus 1 lg~~V~~~~~~~eal~~l~~~~~~~DlVl~D~~mp~~dG~~l~~~l~-~~~~~pvI~ls~~~~~~~~~~a~~~ga~~yl~ 79 (226)
.||+|..+.++.+|++.+.... ||+||+|+.||+++|+++++.++ ..+.+|||++|+..+.+....++..|+++||.
T Consensus 26 ~g~~v~~~~~~~~a~~~l~~~~--~dliild~~l~~~~g~~~~~~l~~~~~~~pii~ls~~~~~~~~~~~~~~g~~~~l~ 103 (155)
T 1qkk_A 26 AGFTVSSFASATEALAGLSADF--AGIVISDIRMPGMDGLALFRKILALDPDLPMILVTGHGDIPMAVQAIQDGAYDFIA 103 (155)
T ss_dssp TTCEEEEESCHHHHHHTCCTTC--CSEEEEESCCSSSCHHHHHHHHHHHCTTSCEEEEECGGGHHHHHHHHHTTCCEEEE
T ss_pred cCcEEEEECCHHHHHHHHHhCC--CCEEEEeCCCCCCCHHHHHHHHHhhCCCCCEEEEECCCChHHHHHHHhcCCCeEEe
Confidence 4899999999999999998766 99999999999999999999997 45789999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhh
Q 027234 80 KPVRIEELKNIWQHVVRKRKN 100 (226)
Q Consensus 80 KP~~~~~L~~~l~~~~~~~~~ 100 (226)
||++.++|...+++++.....
T Consensus 104 kP~~~~~L~~~i~~~~~~~~~ 124 (155)
T 1qkk_A 104 KPFAADRLVQSARRAEEKRRL 124 (155)
T ss_dssp SSCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999876554
No 78
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=99.71 E-value=1.6e-16 Score=118.01 Aligned_cols=95 Identities=22% Similarity=0.383 Sum_probs=86.1
Q ss_pred EEEECCHHHHHHHHHhCCCCceEEEEccCCCCCCHHHHHHHHh-cCCCCcEEEEeccCCHHHHHHHHhCCcceEEeCCCC
Q 027234 5 VTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVG-LEMDLPVIMMCAHGSKEVVMKGVTHDACDYLTKPVR 83 (226)
Q Consensus 5 V~~~~~~~eal~~l~~~~~~~DlVl~D~~mp~~dG~~l~~~l~-~~~~~pvI~ls~~~~~~~~~~a~~~ga~~yl~KP~~ 83 (226)
|..+.++.+|++.+.... ||+||+|+.||+++|+++++.++ ..+.+|||++|+..+.....++++.||++||.||++
T Consensus 44 v~~~~~~~~a~~~l~~~~--~dlii~d~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~Kp~~ 121 (152)
T 3eul_A 44 VGEADDGAAALELIKAHL--PDVALLDYRMPGMDGAQVAAAVRSYELPTRVLLISAHDEPAIVYQALQQGAAGFLLKDST 121 (152)
T ss_dssp EEEESSHHHHHHHHHHHC--CSEEEEETTCSSSCHHHHHHHHHHTTCSCEEEEEESCCCHHHHHHHHHTTCSEEEETTCC
T ss_pred EEEeCCHHHHHHHHHhcC--CCEEEEeCCCCCCCHHHHHHHHHhcCCCCeEEEEEccCCHHHHHHHHHcCCCEEEecCCC
Confidence 558999999999999876 99999999999999999999997 557899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 027234 84 IEELKNIWQHVVRKRKNE 101 (226)
Q Consensus 84 ~~~L~~~l~~~~~~~~~~ 101 (226)
.++|..++++++.+....
T Consensus 122 ~~~l~~~i~~~~~~~~~~ 139 (152)
T 3eul_A 122 RTEIVKAVLDCAKGRDVV 139 (152)
T ss_dssp HHHHHHHHHHHHHCC---
T ss_pred HHHHHHHHHHHHcCCeee
Confidence 999999999998765543
No 79
>3eq2_A Probable two-component response regulator; adaptor sigmas, signaling protein; 3.40A {Pseudomonas aeruginosa} PDB: 3f7a_A
Probab=99.70 E-value=4.9e-17 Score=139.49 Aligned_cols=95 Identities=23% Similarity=0.478 Sum_probs=84.3
Q ss_pred CCcEEEEECCHHHHHHHHHhCCCCceEEEEccCCCCCCHHHHHHHHh-cCCCCcEEEEeccCCHHHHHHHHhCCcceEEe
Q 027234 1 MGFSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVG-LEMDLPVIMMCAHGSKEVVMKGVTHDACDYLT 79 (226)
Q Consensus 1 lg~~V~~~~~~~eal~~l~~~~~~~DlVl~D~~mp~~dG~~l~~~l~-~~~~~pvI~ls~~~~~~~~~~a~~~ga~~yl~ 79 (226)
.||+|..+.++.+|++.+.... ||+||+|+.||+|||+++++.++ ..+++|||++|+..+.+...++++.||++||.
T Consensus 28 ~g~~v~~a~~~~~al~~~~~~~--~dlvllD~~mp~~~G~~~~~~lr~~~~~~pii~lt~~~~~~~~~~a~~~ga~~yl~ 105 (394)
T 3eq2_A 28 SNFKVLQALNGLQGLQIFESEQ--PDLVICDLRMPQIDGLELIRRIRQTASETPIIVLSGAGVMSDAVEALRLGAADYLI 105 (394)
T ss_dssp TTEEEEECSSHHHHHHHHHHSC--CSEEEECCCSSSSCTHHHHHHHHHTTCCCCEEEC---CHHHHHHHHHHHTCSEECC
T ss_pred CCCEEEEECCHHHHHHHHhhCC--CCEEEEcCCCCCCCHHHHHHHHHhhCCCCcEEEEEcCCCHHHHHHHHhcChhhEEE
Confidence 4899999999999999999876 99999999999999999999998 45789999999999999999999999999999
Q ss_pred CCC-CHHHHHHHHHHHHHH
Q 027234 80 KPV-RIEELKNIWQHVVRK 97 (226)
Q Consensus 80 KP~-~~~~L~~~l~~~~~~ 97 (226)
||+ ..+.|...+++++..
T Consensus 106 KP~~~~~~l~~~i~~~~~~ 124 (394)
T 3eq2_A 106 KPLEDLAVLEHSVRRALDR 124 (394)
T ss_dssp SSCSCTHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHhh
Confidence 999 688888888877654
No 80
>3bre_A Probable two-component response regulator; protein-nucleotide complex, signaling protein; HET: C2E; 2.40A {Pseudomonas aeruginosa} PDB: 3i5a_A*
Probab=99.70 E-value=2e-16 Score=133.62 Aligned_cols=92 Identities=24% Similarity=0.349 Sum_probs=85.7
Q ss_pred CcEEEEECCHHHHHHHHHhCCCCceEEEEccCCCCCCHHHHHHHHhcC---CCCcEEEEeccCCHHHHHHHHhCCcceEE
Q 027234 2 GFSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVGLE---MDLPVIMMCAHGSKEVVMKGVTHDACDYL 78 (226)
Q Consensus 2 g~~V~~~~~~~eal~~l~~~~~~~DlVl~D~~mp~~dG~~l~~~l~~~---~~~pvI~ls~~~~~~~~~~a~~~ga~~yl 78 (226)
||.|..+.++.+|++.+.... ||+||+|+.||+|||+++++.++.. +.+|||++|+..+.+....+++.||++||
T Consensus 43 ~~~v~~~~~~~~al~~~~~~~--~dlvl~D~~mp~~~G~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~a~~~Ga~~~l 120 (358)
T 3bre_A 43 GIDFHFCSDPQQAVAVANQIK--PTVILQDLVMPGVDGLTLLAAYRGNPATRDIPIIVLSTKEEPTVKSAAFAAGANDYL 120 (358)
T ss_dssp TEEEEEECCHHHHHHHHHHHC--CSEEEEESBCSSSBHHHHHHHHTTSTTTTTSCEEEEESSCCHHHHHHHHHTTCSEEE
T ss_pred CcEEEEeCCHHHHHHHHHhCC--CCEEEEeCCCCCCCHHHHHHHHhcCcccCCCcEEEEeCCCCHHHHHHHHhcChheEe
Confidence 789999999999999998876 9999999999999999999999853 57999999999999999999999999999
Q ss_pred eCCCCHHHHHHHHHHHH
Q 027234 79 TKPVRIEELKNIWQHVV 95 (226)
Q Consensus 79 ~KP~~~~~L~~~l~~~~ 95 (226)
.||++.++|...+..+.
T Consensus 121 ~Kp~~~~~l~~~v~~~~ 137 (358)
T 3bre_A 121 VKLPDAIELVARIRYHS 137 (358)
T ss_dssp ESCCCHHHHHHHHHHHH
T ss_pred eccCCHHHHHHHHHHHH
Confidence 99999999999988764
No 81
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=99.70 E-value=6.5e-17 Score=114.42 Aligned_cols=91 Identities=23% Similarity=0.420 Sum_probs=81.4
Q ss_pred CCcEEEEECCHHHHHHHHHhCCCCceEEEEccCCCCCCHHHHHHHHh-cCCCCcEEEEeccCCHHHHHHHHhCCcceEEe
Q 027234 1 MGFSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVG-LEMDLPVIMMCAHGSKEVVMKGVTHDACDYLT 79 (226)
Q Consensus 1 lg~~V~~~~~~~eal~~l~~~~~~~DlVl~D~~mp~~dG~~l~~~l~-~~~~~pvI~ls~~~~~~~~~~a~~~ga~~yl~ 79 (226)
.||.|..+.++.+|++.+.... ||+||+|+.||+++|+++++.++ ..+.+|+|++|+..+.. ..++..|+++|+.
T Consensus 24 ~~~~v~~~~~~~~a~~~~~~~~--~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~--~~~~~~g~~~~l~ 99 (116)
T 3a10_A 24 EGYEIDTAENGEEALKKFFSGN--YDLVILDIEMPGISGLEVAGEIRKKKKDAKIILLTAYSHYR--SDMSSWAADEYVV 99 (116)
T ss_dssp TTCEEEEESSHHHHHHHHHHSC--CSEEEECSCCSSSCHHHHHHHHHHHCTTCCEEEEESCGGGG--GCGGGGGSSEEEE
T ss_pred CCCEEEEeCCHHHHHHHHhcCC--CCEEEEECCCCCCCHHHHHHHHHccCCCCeEEEEECCcchH--HHHHhccccceEE
Confidence 3799999999999999998866 99999999999999999999997 45789999999876655 7788999999999
Q ss_pred CCCCHHHHHHHHHHHH
Q 027234 80 KPVRIEELKNIWQHVV 95 (226)
Q Consensus 80 KP~~~~~L~~~l~~~~ 95 (226)
||++.++|...+++++
T Consensus 100 Kp~~~~~l~~~i~~~~ 115 (116)
T 3a10_A 100 KSFNFDELKEKVKKLL 115 (116)
T ss_dssp CCSSTHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHh
Confidence 9999999999888753
No 82
>1w25_A Stalked-cell differentiation controlling protein; two-component system, ggdef domain, cyclic dinucleotide, cyclic-digmp; HET: C2E; 2.70A {Caulobacter vibrioides} SCOP: c.23.1.1 c.23.1.1 d.58.29.2 PDB: 2v0n_A* 2wb4_A*
Probab=99.70 E-value=1.7e-16 Score=138.47 Aligned_cols=98 Identities=27% Similarity=0.385 Sum_probs=90.0
Q ss_pred CCcEEEEECCHHHHHHHHHhCCCCceEEEEccCCCCCCHHHHHHHHhcC---CCCcEEEEeccCCHHHHHHHHhCCcceE
Q 027234 1 MGFSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVGLE---MDLPVIMMCAHGSKEVVMKGVTHDACDY 77 (226)
Q Consensus 1 lg~~V~~~~~~~eal~~l~~~~~~~DlVl~D~~mp~~dG~~l~~~l~~~---~~~pvI~ls~~~~~~~~~~a~~~ga~~y 77 (226)
.||.|..+.++.+|++.+.... ||+||+|+.||+|||+++++.++.. +.+|||++|+..+.+...++++.||++|
T Consensus 24 ~~~~v~~a~~~~~al~~~~~~~--~dlvllD~~mp~~~G~~~~~~l~~~~~~~~~pii~lt~~~~~~~~~~a~~~Ga~~~ 101 (459)
T 1w25_A 24 EYYEVSTAMDGPTALAMAARDL--PDIILLDVMMPGMDGFTVCRKLKDDPTTRHIPVVLITALDGRGDRIQGLESGASDF 101 (459)
T ss_dssp TTCEEEEESSHHHHHHHHHHHC--CSEEEEESCCSSSCHHHHHHHHHHSTTTTTSCEEEEECSSCHHHHHHHHHHTCCEE
T ss_pred cCCEEEEECCHHHHHHHHhcCC--CCEEEEcCCCCCCCHHHHHHHHhcCcccCCCCEEEEECCCCHHHHHHHHHcCCCEE
Confidence 3799999999999999998876 9999999999999999999999853 5789999999999999999999999999
Q ss_pred EeCCCCHHHHHHHHHHHHHHHhh
Q 027234 78 LTKPVRIEELKNIWQHVVRKRKN 100 (226)
Q Consensus 78 l~KP~~~~~L~~~l~~~~~~~~~ 100 (226)
|.||++.++|...++.+++....
T Consensus 102 l~KP~~~~~l~~~i~~~~~~~~~ 124 (459)
T 1w25_A 102 LTKPIDDVMLFARVRSLTRFKLV 124 (459)
T ss_dssp EESSCCHHHHHHHHHHHHHHHHH
T ss_pred EeCCCCHHHHHHHHHHHHHHHhh
Confidence 99999999999999998876543
No 83
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=99.70 E-value=1.7e-16 Score=115.89 Aligned_cols=97 Identities=20% Similarity=0.308 Sum_probs=88.0
Q ss_pred CCcEEEEECCHHHHHHHHHhCCCCceEEEEccCCC-----CCCHHHHHHHHh-cCCCCcEEEEeccCCHHHHHHHHhCCc
Q 027234 1 MGFSVTKCNRAEIALDMLRTNKNGYDIVISDVHMP-----DMDGFKLLELVG-LEMDLPVIMMCAHGSKEVVMKGVTHDA 74 (226)
Q Consensus 1 lg~~V~~~~~~~eal~~l~~~~~~~DlVl~D~~mp-----~~dG~~l~~~l~-~~~~~pvI~ls~~~~~~~~~~a~~~ga 74 (226)
.||.|..+.++.+|++.+.... ||+||+|+.|| +++|+++++.++ ..+.+|+|++|+..+.+....+++.|+
T Consensus 26 ~g~~v~~~~~~~~a~~~l~~~~--~dlvi~d~~~~~~~~~~~~g~~~~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~~g~ 103 (140)
T 2qr3_A 26 HFSKVITLSSPVSLSTVLREEN--PEVVLLDMNFTSGINNGNEGLFWLHEIKRQYRDLPVVLFTAYADIDLAVRGIKEGA 103 (140)
T ss_dssp TSSEEEEECCHHHHHHHHHHSC--EEEEEEETTTTC-----CCHHHHHHHHHHHCTTCCEEEEEEGGGHHHHHHHHHTTC
T ss_pred CCcEEEEeCCHHHHHHHHHcCC--CCEEEEeCCcCCCCCCCccHHHHHHHHHhhCcCCCEEEEECCCCHHHHHHHHHcCc
Confidence 3799999999999999999876 99999999999 999999999997 457899999999999999999999999
Q ss_pred ceEEeCCCCHHHHHHHHHHHHHHHh
Q 027234 75 CDYLTKPVRIEELKNIWQHVVRKRK 99 (226)
Q Consensus 75 ~~yl~KP~~~~~L~~~l~~~~~~~~ 99 (226)
++||.||++.++|...+++++++..
T Consensus 104 ~~~l~kp~~~~~l~~~l~~~~~~~~ 128 (140)
T 2qr3_A 104 SDFVVKPWDNQKLLETLLNAASQAK 128 (140)
T ss_dssp CEEEEESCCHHHHHHHHHHHHTCC-
T ss_pred hheeeCCCCHHHHHHHHHHHHHhcc
Confidence 9999999999999999999876543
No 84
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=99.70 E-value=5.4e-17 Score=118.92 Aligned_cols=98 Identities=24% Similarity=0.450 Sum_probs=89.4
Q ss_pred CCcEEEEECCHHHHHHHHHhCCCCceEEEEccCCCCCCHHHHHHHHhc---CCCCcEEEEeccCCHHHHHHHHhCCcceE
Q 027234 1 MGFSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVGL---EMDLPVIMMCAHGSKEVVMKGVTHDACDY 77 (226)
Q Consensus 1 lg~~V~~~~~~~eal~~l~~~~~~~DlVl~D~~mp~~dG~~l~~~l~~---~~~~pvI~ls~~~~~~~~~~a~~~ga~~y 77 (226)
.||+|..+.++.+|++.+.... ||+||+|+.||+++|+++++.++. .+.+|||++|+..+.+....+++.|+++|
T Consensus 30 ~g~~v~~~~~~~~a~~~l~~~~--~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~pii~~s~~~~~~~~~~~~~~g~~~~ 107 (142)
T 3cg4_A 30 AGFHIISADSGGQCIDLLKKGF--SGVVLLDIMMPGMDGWDTIRAILDNSLEQGIAIVMLTAKNAPDAKMIGLQEYVVDY 107 (142)
T ss_dssp TTCEEEEESSHHHHHHHHHTCC--CEEEEEESCCSSSCHHHHHHHHHHTTCCTTEEEEEEECTTCCCCSSTTGGGGEEEE
T ss_pred CCeEEEEeCCHHHHHHHHHhcC--CCEEEEeCCCCCCCHHHHHHHHHhhcccCCCCEEEEECCCCHHHHHHHHhcCccEE
Confidence 3799999999999999999876 999999999999999999999975 46789999999988888889999999999
Q ss_pred EeCCCCHHHHHHHHHHHHHHHhh
Q 027234 78 LTKPVRIEELKNIWQHVVRKRKN 100 (226)
Q Consensus 78 l~KP~~~~~L~~~l~~~~~~~~~ 100 (226)
|.||++.++|...++++++..+.
T Consensus 108 l~kp~~~~~l~~~i~~~~~~~~~ 130 (142)
T 3cg4_A 108 ITKPFDNEDLIEKTTFFMGFVRN 130 (142)
T ss_dssp EESSCCHHHHHHHHHHHHHHHHH
T ss_pred EeCCCCHHHHHHHHHHHHHHHhh
Confidence 99999999999999999876554
No 85
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=99.70 E-value=1.9e-16 Score=114.51 Aligned_cols=96 Identities=21% Similarity=0.266 Sum_probs=81.0
Q ss_pred CCcEEEEECCHHHHHHHHHhCCCCceEEEEccCCCCCCHHHHHHHHhcCC---CCcEEEEeccCCHHHHHHHHhCCcceE
Q 027234 1 MGFSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVGLEM---DLPVIMMCAHGSKEVVMKGVTHDACDY 77 (226)
Q Consensus 1 lg~~V~~~~~~~eal~~l~~~~~~~DlVl~D~~mp~~dG~~l~~~l~~~~---~~pvI~ls~~~~~~~~~~a~~~ga~~y 77 (226)
.||.|..+.++.+|++.+.... ||+||+|+.||+++|+++++.++... .++||+++..... ...++++.|+++|
T Consensus 29 ~g~~v~~~~~~~~a~~~l~~~~--~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~~ii~~~~~~~~-~~~~~~~~g~~~~ 105 (132)
T 3lte_A 29 DHWQVEIAHNGFDAGIKLSTFE--PAIMTLDLSMPKLDGLDVIRSLRQNKVANQPKILVVSGLDKA-KLQQAVTEGADDY 105 (132)
T ss_dssp TTCEEEEESSHHHHHHHHHHTC--CSEEEEESCBTTBCHHHHHHHHHTTTCSSCCEEEEECCSCSH-HHHHHHHHTCCEE
T ss_pred CCcEEEEeCCHHHHHHHHHhcC--CCEEEEecCCCCCCHHHHHHHHHhcCccCCCeEEEEeCCChH-HHHHHHHhChHHH
Confidence 4799999999999999999876 99999999999999999999998543 3555656655554 7889999999999
Q ss_pred EeCCCCHHHHHHHHHHHHHHHh
Q 027234 78 LTKPVRIEELKNIWQHVVRKRK 99 (226)
Q Consensus 78 l~KP~~~~~L~~~l~~~~~~~~ 99 (226)
|.||++.++|...+++...+..
T Consensus 106 l~kP~~~~~l~~~i~~~~~~~~ 127 (132)
T 3lte_A 106 LEKPFDNDALLDRIHDLVNEGH 127 (132)
T ss_dssp ECSSCCHHHHHHHHHHHHC---
T ss_pred hhCCCCHHHHHHHHHHHcCCCC
Confidence 9999999999999998876543
No 86
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=99.69 E-value=1.4e-16 Score=118.41 Aligned_cols=97 Identities=21% Similarity=0.360 Sum_probs=89.1
Q ss_pred CcEEE-EECCHHHHHHHHHhCCCCceEEEEccCCCCCCHHHHHHHHh-cCCCCcEEEEeccCCHHHHHHHHhCCcceEEe
Q 027234 2 GFSVT-KCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVG-LEMDLPVIMMCAHGSKEVVMKGVTHDACDYLT 79 (226)
Q Consensus 2 g~~V~-~~~~~~eal~~l~~~~~~~DlVl~D~~mp~~dG~~l~~~l~-~~~~~pvI~ls~~~~~~~~~~a~~~ga~~yl~ 79 (226)
||.|. .+.++.+|++.+.... ||+||+|+.||+++|+++++.++ ..+.+|||++|+..+.+....++..|+++||.
T Consensus 30 ~~~v~~~~~~~~~a~~~l~~~~--~dlii~D~~l~~~~g~~~~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~ 107 (153)
T 3cz5_A 30 GYAVVAEAADAGEAYRLYRETT--PDIVVMDLTLPGPGGIEATRHIRQWDGAARILIFTMHQGSAFALKAFEAGASGYVT 107 (153)
T ss_dssp TEEEEEEESSHHHHHHHHHTTC--CSEEEECSCCSSSCHHHHHHHHHHHCTTCCEEEEESCCSHHHHHHHHHTTCSEEEE
T ss_pred CcEEEEEeCCHHHHHHHHhcCC--CCEEEEecCCCCCCHHHHHHHHHHhCCCCeEEEEECCCCHHHHHHHHHCCCcEEEe
Confidence 78887 8999999999999876 99999999999999999999997 45789999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhh
Q 027234 80 KPVRIEELKNIWQHVVRKRKN 100 (226)
Q Consensus 80 KP~~~~~L~~~l~~~~~~~~~ 100 (226)
||++.++|...+++++++...
T Consensus 108 kp~~~~~L~~~i~~~~~~~~~ 128 (153)
T 3cz5_A 108 KSSDPAELVQAIEAILAGRRA 128 (153)
T ss_dssp TTSCTTHHHHHHHHHTTTCCE
T ss_pred cCCCHHHHHHHHHHHHhCCcc
Confidence 999999999999998765543
No 87
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=99.69 E-value=1.2e-16 Score=127.00 Aligned_cols=97 Identities=29% Similarity=0.469 Sum_probs=89.5
Q ss_pred CCcEEEEECCHHHHHHHHHhCCCCceEEEEccCCCCCCHHHHHHHHhc-CCCCcEEEEeccCCHHHHHHHHhCCcceEEe
Q 027234 1 MGFSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVGL-EMDLPVIMMCAHGSKEVVMKGVTHDACDYLT 79 (226)
Q Consensus 1 lg~~V~~~~~~~eal~~l~~~~~~~DlVl~D~~mp~~dG~~l~~~l~~-~~~~pvI~ls~~~~~~~~~~a~~~ga~~yl~ 79 (226)
.||.|..+.++.+|++.+.... ||+||+|+.||+++|+++++.++. .+.+|||++|+..+.+....++..||++||.
T Consensus 30 ~g~~v~~~~~~~~a~~~~~~~~--~dlvllD~~l~~~~g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~ga~~~l~ 107 (233)
T 1ys7_A 30 SGFEVATAVDGAEALRSATENR--PDAIVLDINMPVLDGVSVVTALRAMDNDVPVCVLSARSSVDDRVAGLEAGADDYLV 107 (233)
T ss_dssp TTCEEEEESSHHHHHHHHHHSC--CSEEEEESSCSSSCHHHHHHHHHHTTCCCCEEEEECCCTTTCCCTTTTTTCSEEEE
T ss_pred CCCEEEEECCHHHHHHHHHhCC--CCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEEEEcCCCHHHHHHHHHcCCCEEEe
Confidence 3799999999999999999876 999999999999999999999984 5789999999999988889999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHh
Q 027234 80 KPVRIEELKNIWQHVVRKRK 99 (226)
Q Consensus 80 KP~~~~~L~~~l~~~~~~~~ 99 (226)
||++.++|...++.++++..
T Consensus 108 Kp~~~~~L~~~i~~~~~~~~ 127 (233)
T 1ys7_A 108 KPFVLAELVARVKALLRRRG 127 (233)
T ss_dssp SSCCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhhcc
Confidence 99999999999999987643
No 88
>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV}
Probab=99.68 E-value=1.2e-16 Score=126.77 Aligned_cols=96 Identities=30% Similarity=0.409 Sum_probs=89.0
Q ss_pred CCcEEEEECCHHHHHHHHHhCCCCceEEEEccCCCCCCHHHHHHHHhcCCCCcEEEEeccCCHHHHHHHHhCCcceEEeC
Q 027234 1 MGFSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVGLEMDLPVIMMCAHGSKEVVMKGVTHDACDYLTK 80 (226)
Q Consensus 1 lg~~V~~~~~~~eal~~l~~~~~~~DlVl~D~~mp~~dG~~l~~~l~~~~~~pvI~ls~~~~~~~~~~a~~~ga~~yl~K 80 (226)
.||.|..+.++.+|++.+.... ||+||+|+.||+++|+++++.++..+.+|||++|+..+......+++.||++||.|
T Consensus 27 ~g~~v~~~~~~~~al~~~~~~~--~dlvllD~~l~~~~g~~~~~~l~~~~~~~ii~lt~~~~~~~~~~~~~~ga~~~l~K 104 (230)
T 2oqr_A 27 EGFEATVVTDGPAALAEFDRAG--ADIVLLDLMLPGMSGTDVCKQLRARSSVPVIMVTARDSEIDKVVGLELGADDYVTK 104 (230)
T ss_dssp TTCEEEEECSHHHHHHHHHHHC--CSEEEEESSCSSSCHHHHHHHHHHHCSCSEEEEECCHHHHHHHHHHHHCCSCCCCS
T ss_pred CCCEEEEECCHHHHHHHHhccC--CCEEEEECCCCCCCHHHHHHHHHcCCCCCEEEEeCCCcHHHHHHHHHcCCCEEEeC
Confidence 3789999999999999998866 99999999999999999999998668899999999988888999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHH
Q 027234 81 PVRIEELKNIWQHVVRKR 98 (226)
Q Consensus 81 P~~~~~L~~~l~~~~~~~ 98 (226)
|++.++|...++.++++.
T Consensus 105 p~~~~~l~~~i~~~~~~~ 122 (230)
T 2oqr_A 105 PYSARELIARIRAVLRRG 122 (230)
T ss_dssp SCCHHHHHHHHHHHHTTT
T ss_pred CCCHHHHHHHHHHHHhhc
Confidence 999999999999987653
No 89
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=99.67 E-value=1.1e-15 Score=112.08 Aligned_cols=92 Identities=18% Similarity=0.277 Sum_probs=83.8
Q ss_pred Cc--EEEEECCHHHHHHHHHh------CCCCceEEEEccCCCCCCHHHHHHHHhcC---CCCcEEEEeccCCHHHHHHHH
Q 027234 2 GF--SVTKCNRAEIALDMLRT------NKNGYDIVISDVHMPDMDGFKLLELVGLE---MDLPVIMMCAHGSKEVVMKGV 70 (226)
Q Consensus 2 g~--~V~~~~~~~eal~~l~~------~~~~~DlVl~D~~mp~~dG~~l~~~l~~~---~~~pvI~ls~~~~~~~~~~a~ 70 (226)
|| .|..+.++.+|++.+.. .. ||+||+|+.||+++|+++++.++.. +.+|+|++|+..+.+....++
T Consensus 31 g~~~~v~~~~~~~~a~~~l~~~~~~~~~~--~dlii~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~ls~~~~~~~~~~~~ 108 (143)
T 2qvg_A 31 SSLIKIEIAKSGNQALDMLYGRNKENKIH--PKLILLDINIPKMNGIEFLKELRDDSSFTDIEVFVLTAAYTSKDKLAFE 108 (143)
T ss_dssp CTTCCEEEESSHHHHHHHHHTCTTCCCCC--CSEEEEETTCTTSCHHHHHHHHTTSGGGTTCEEEEEESCCCHHHHHHHT
T ss_pred CCCceEEEECCHHHHHHHHHhcccccCCC--CCEEEEecCCCCCCHHHHHHHHHcCccccCCcEEEEeCCCCHHHHHHHH
Confidence 55 89999999999999986 44 9999999999999999999999854 689999999999999999999
Q ss_pred hCCcceEEeCCCCHHHHHHHHHHHH
Q 027234 71 THDACDYLTKPVRIEELKNIWQHVV 95 (226)
Q Consensus 71 ~~ga~~yl~KP~~~~~L~~~l~~~~ 95 (226)
+.|+++||.||++.++|..++....
T Consensus 109 ~~g~~~~l~kP~~~~~L~~~~~~~~ 133 (143)
T 2qvg_A 109 SLNIRGHLIKPLDYGEAIKLFWILQ 133 (143)
T ss_dssp TTTCCEEEESSCCHHHHHHHHHHHH
T ss_pred hcCCCeEEECCCCHHHHHHHHHHHH
Confidence 9999999999999999999876643
No 90
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=99.66 E-value=6.9e-16 Score=110.35 Aligned_cols=92 Identities=16% Similarity=0.385 Sum_probs=84.7
Q ss_pred CcEEEEECCHHHHHHHHHhCCCCceEEEEccCCC-CCCHHHHHHHHhcC---CCCcEEEEeccCCHHHHHHHHhCCcceE
Q 027234 2 GFSVTKCNRAEIALDMLRTNKNGYDIVISDVHMP-DMDGFKLLELVGLE---MDLPVIMMCAHGSKEVVMKGVTHDACDY 77 (226)
Q Consensus 2 g~~V~~~~~~~eal~~l~~~~~~~DlVl~D~~mp-~~dG~~l~~~l~~~---~~~pvI~ls~~~~~~~~~~a~~~ga~~y 77 (226)
||+|..+.++.+|++.+.... ||+||+|+.|| +++|+++++.++.. +.+|+|++ +..+.+....++..|+++|
T Consensus 29 g~~v~~~~~~~~a~~~~~~~~--~dlvi~d~~~~~~~~g~~~~~~l~~~~~~~~~~ii~~-~~~~~~~~~~~~~~g~~~~ 105 (127)
T 2gkg_A 29 GFTVDETTDGKGSVEQIRRDR--PDLVVLAVDLSAGQNGYLICGKLKKDDDLKNVPIVII-GNPDGFAQHRKLKAHADEY 105 (127)
T ss_dssp TCEEEEECCHHHHHHHHHHHC--CSEEEEESBCGGGCBHHHHHHHHHHSTTTTTSCEEEE-ECGGGHHHHHHSTTCCSEE
T ss_pred CceEEEecCHHHHHHHHHhcC--CCEEEEeCCCCCCCCHHHHHHHHhcCccccCCCEEEE-ecCCchhHHHHHHhCcchh
Confidence 799999999999999999876 99999999999 99999999999853 68999999 8888888899999999999
Q ss_pred EeCCCCHHHHHHHHHHHHH
Q 027234 78 LTKPVRIEELKNIWQHVVR 96 (226)
Q Consensus 78 l~KP~~~~~L~~~l~~~~~ 96 (226)
+.||++.++|...++++++
T Consensus 106 l~kp~~~~~l~~~i~~~~~ 124 (127)
T 2gkg_A 106 VAKPVDADQLVERAGALIG 124 (127)
T ss_dssp EESSCCHHHHHHHHHHHHC
T ss_pred eeCCCCHHHHHHHHHHHHc
Confidence 9999999999999988763
No 91
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=99.66 E-value=2.8e-16 Score=125.53 Aligned_cols=95 Identities=25% Similarity=0.451 Sum_probs=88.1
Q ss_pred CCcEEEEECCHHHHHHHHHhCCCCceEEEEccCCCCCCHHHHHHHHhcCCCCcEEEEeccCCHHHHHHHHhCCcceEEeC
Q 027234 1 MGFSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVGLEMDLPVIMMCAHGSKEVVMKGVTHDACDYLTK 80 (226)
Q Consensus 1 lg~~V~~~~~~~eal~~l~~~~~~~DlVl~D~~mp~~dG~~l~~~l~~~~~~pvI~ls~~~~~~~~~~a~~~ga~~yl~K 80 (226)
.||+|..+.++.+|++.+.... ||+||+|+.||+++|+++++.++..+.+|||++|+..+......++..||++||.|
T Consensus 28 ~g~~v~~~~~~~~al~~l~~~~--~dlvilD~~l~~~~g~~~~~~lr~~~~~~ii~lt~~~~~~~~~~~~~~Ga~~~l~K 105 (238)
T 2gwr_A 28 EGFDTAVIGDGTQALTAVRELR--PDLVLLDLMLPGMNGIDVCRVLRADSGVPIVMLTAKTDTVDVVLGLESGADDYIMK 105 (238)
T ss_dssp TTCEEEEECCGGGHHHHHHHHC--CSEEEEESSCSSSCHHHHHHHHHTTCCCCEEEEEETTCCSCHHHHHHTTCCEEEEE
T ss_pred CCCEEEEECCHHHHHHHHHhCC--CCEEEEeCCCCCCCHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHCCCCEEEeC
Confidence 3799999999999999998876 99999999999999999999998667899999999999888999999999999999
Q ss_pred CCCHHHHHHHHHHHHHH
Q 027234 81 PVRIEELKNIWQHVVRK 97 (226)
Q Consensus 81 P~~~~~L~~~l~~~~~~ 97 (226)
|++.++|...++.++++
T Consensus 106 p~~~~~L~~~i~~~~~~ 122 (238)
T 2gwr_A 106 PFKPKELVARVRARLRR 122 (238)
T ss_dssp SCCHHHHHHHHHHHCCC
T ss_pred CCCHHHHHHHHHHHHhh
Confidence 99999999999988654
No 92
>1dcf_A ETR1 protein; beta-alpha five sandwich, transferase; 2.50A {Arabidopsis thaliana} SCOP: c.23.1.2
Probab=99.66 E-value=7.5e-16 Score=112.12 Aligned_cols=93 Identities=17% Similarity=0.329 Sum_probs=81.3
Q ss_pred CCcEEEEECCHHHHHHHHHhCCCCceEEEEccCCCCCCHHHHHHHHh-cCC----CC-cEEEEeccCCHHHHHHHHhCCc
Q 027234 1 MGFSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVG-LEM----DL-PVIMMCAHGSKEVVMKGVTHDA 74 (226)
Q Consensus 1 lg~~V~~~~~~~eal~~l~~~~~~~DlVl~D~~mp~~dG~~l~~~l~-~~~----~~-pvI~ls~~~~~~~~~~a~~~ga 74 (226)
.||.|..+.++.+|++.+... +|+||+|+.||+++|+++++.++ ..+ .. ++|++|+..+.....++++.|+
T Consensus 30 ~g~~v~~~~~~~~a~~~~~~~---~dlvllD~~lp~~~g~~~~~~l~~~~~~~~~~~~~ii~~s~~~~~~~~~~~~~~ga 106 (136)
T 1dcf_A 30 LGCEVTTVSSNEECLRVVSHE---HKVVFMDVCMPGVENYQIALRIHEKFTKQRHQRPLLVALSGNTDKSTKEKCMSFGL 106 (136)
T ss_dssp TTCEEEEESSHHHHHHHCCTT---CSEEEEECCSSTTTTTHHHHHHHHHHC-CCSCCCEEEEEESCCSHHHHHHHHHTTC
T ss_pred cCCeEEEeCCHHHHHHHHhcc---CCEEEEeCCCCCCcHHHHHHHHHHhhhhccCCCceEEEEeCCCCHHHHHHHHHcCC
Confidence 479999999999999988642 49999999999999999999986 222 23 5788999999999999999999
Q ss_pred ceEEeCCCCHHHHHHHHHHHHH
Q 027234 75 CDYLTKPVRIEELKNIWQHVVR 96 (226)
Q Consensus 75 ~~yl~KP~~~~~L~~~l~~~~~ 96 (226)
++||.||++.++|...+++++.
T Consensus 107 ~~~l~KP~~~~~L~~~l~~~~~ 128 (136)
T 1dcf_A 107 DGVLLKPVSLDNIRDVLSDLLE 128 (136)
T ss_dssp CEEEESSCCHHHHHHHHHHHHS
T ss_pred CeEEECCCCHHHHHHHHHHHhc
Confidence 9999999999999999988764
No 93
>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae}
Probab=99.66 E-value=2.5e-15 Score=110.20 Aligned_cols=95 Identities=20% Similarity=0.332 Sum_probs=82.6
Q ss_pred CcE-EEEECCHHHHHHHHHhCCCCceEEEEccCCCCCCHHHHHHHHhcC-CCCcEEEEeccCCHHHHHHHHhCCcceEEe
Q 027234 2 GFS-VTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVGLE-MDLPVIMMCAHGSKEVVMKGVTHDACDYLT 79 (226)
Q Consensus 2 g~~-V~~~~~~~eal~~l~~~~~~~DlVl~D~~mp~~dG~~l~~~l~~~-~~~pvI~ls~~~~~~~~~~a~~~ga~~yl~ 79 (226)
||. |..+.++.+|++.+.... ||+||+|+.||+++|+++++.++.. +.+|||++|+..+ ...+++..|+++||.
T Consensus 34 ~~~~v~~~~~~~~al~~l~~~~--~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~--~~~~~~~~g~~~~l~ 109 (143)
T 2qv0_A 34 QMEIVGSFDDGLDVLKFLQHNK--VDAIFLDINIPSLDGVLLAQNISQFAHKPFIVFITAWKE--HAVEAFELEAFDYIL 109 (143)
T ss_dssp CCEEEEEESCHHHHHHHHHHCC--CSEEEECSSCSSSCHHHHHHHHTTSTTCCEEEEEESCCT--THHHHHHTTCSEEEE
T ss_pred CceEEEEeCCHHHHHHHHHhCC--CCEEEEecCCCCCCHHHHHHHHHccCCCceEEEEeCCHH--HHHHHHhCCcceEEe
Confidence 677 458999999999999876 9999999999999999999999854 4567888888743 567889999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhh
Q 027234 80 KPVRIEELKNIWQHVVRKRKN 100 (226)
Q Consensus 80 KP~~~~~L~~~l~~~~~~~~~ 100 (226)
||++.++|...++++++..+.
T Consensus 110 KP~~~~~l~~~i~~~~~~~~~ 130 (143)
T 2qv0_A 110 KPYQESRIINMLQKLTTAWEQ 130 (143)
T ss_dssp SSCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHh
Confidence 999999999999998876554
No 94
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=99.65 E-value=2.5e-16 Score=117.13 Aligned_cols=97 Identities=16% Similarity=0.237 Sum_probs=77.7
Q ss_pred Cc-EEEEECCHHHHHHHHHh-CCCCceEEEEccCCCCCCHHHHHHHHh-cCCCCcEEEEeccCCHHHHHHHHhCCcceEE
Q 027234 2 GF-SVTKCNRAEIALDMLRT-NKNGYDIVISDVHMPDMDGFKLLELVG-LEMDLPVIMMCAHGSKEVVMKGVTHDACDYL 78 (226)
Q Consensus 2 g~-~V~~~~~~~eal~~l~~-~~~~~DlVl~D~~mp~~dG~~l~~~l~-~~~~~pvI~ls~~~~~~~~~~a~~~ga~~yl 78 (226)
|| .|..+.++.+|++.+.. .. ||+||+|+.||+++|+++++.++ ..+.+|||++|+..+.+....++..|+++||
T Consensus 28 g~~~v~~~~~~~~a~~~l~~~~~--~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l 105 (154)
T 2qsj_A 28 SGMRVEGAETVSDALAFLEADNT--VDLILLDVNLPDAEAIDGLVRLKRFDPSNAVALISGETDHELIRAALEAGADGFI 105 (154)
T ss_dssp TTEEEEEESSHHHHHHHHHTTCC--CSEEEECC------CHHHHHHHHHHCTTSEEEEC-----CHHHHHHHHTTCCBBC
T ss_pred CceEEEEecCHHHHHHHHhccCC--CCEEEEeCCCCCCchHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHccCCEEE
Confidence 67 68899999999999988 66 99999999999999999999997 4578999999999888899999999999999
Q ss_pred eCCCCHHHHHHHHHHHHHHHhh
Q 027234 79 TKPVRIEELKNIWQHVVRKRKN 100 (226)
Q Consensus 79 ~KP~~~~~L~~~l~~~~~~~~~ 100 (226)
.||++.++|...+++++++...
T Consensus 106 ~kp~~~~~L~~~l~~~~~~~~~ 127 (154)
T 2qsj_A 106 PKSADPQVLIHAVSLILEGEIF 127 (154)
T ss_dssp CTTSCHHHHHHHHHHHHTTCCB
T ss_pred eCCCCHHHHHHHHHHHHcCCEE
Confidence 9999999999999998865543
No 95
>3kyj_B CHEY6 protein, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_B*
Probab=99.64 E-value=3.7e-16 Score=115.11 Aligned_cols=90 Identities=21% Similarity=0.303 Sum_probs=72.5
Q ss_pred CcEEE-EECCHHHHHHHHHhC-CCCceEEEEccCCCCCCHHHHHHHHhcCCCCcEEEEec--cCCHHHHHHHHhCCcceE
Q 027234 2 GFSVT-KCNRAEIALDMLRTN-KNGYDIVISDVHMPDMDGFKLLELVGLEMDLPVIMMCA--HGSKEVVMKGVTHDACDY 77 (226)
Q Consensus 2 g~~V~-~~~~~~eal~~l~~~-~~~~DlVl~D~~mp~~dG~~l~~~l~~~~~~pvI~ls~--~~~~~~~~~a~~~ga~~y 77 (226)
||.+. .+.++.+|++.+... . ||+||+|+.||+++|+++++.++.....|+|++++ ..+.+...++++.|+++|
T Consensus 38 ~~~~v~~~~~~~~al~~l~~~~~--~dlvilD~~l~~~~g~~~~~~lr~~~~~~iiil~~~~~~~~~~~~~~~~~ga~~~ 115 (145)
T 3kyj_B 38 DFKVVAQAANGQEALDKLAAQPN--VDLILLDIEMPVMDGMEFLRHAKLKTRAKICMLSSVAVSGSPHAARARELGADGV 115 (145)
T ss_dssp TEEEEEEESSHHHHHHHHHHCTT--CCEEEECTTSCCCTTCHHHHHHHHHCCCEEC-CBSSCSTTSSHHHHHHHTTCSCC
T ss_pred CceEEEEECCHHHHHHHHhcCCC--CCEEEEeCCCCCCCHHHHHHHHHhcCCCCeEEEEEeccCChHHHHHHHhCCCCEE
Confidence 67754 899999999999886 5 99999999999999999999998655689999987 556677889999999999
Q ss_pred EeCCCCHHHHHHHHHH
Q 027234 78 LTKPVRIEELKNIWQH 93 (226)
Q Consensus 78 l~KP~~~~~L~~~l~~ 93 (226)
|.||++.++|...++.
T Consensus 116 l~KP~~~~~l~~~i~~ 131 (145)
T 3kyj_B 116 VAKPSGTVSHDLEEKT 131 (145)
T ss_dssp CBCCCSCC------CT
T ss_pred EeCCCCHHHHHHHHHH
Confidence 9999997666555443
No 96
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=99.64 E-value=2.2e-15 Score=108.77 Aligned_cols=95 Identities=23% Similarity=0.452 Sum_probs=84.7
Q ss_pred CCcEEEEECCHHHHHHHHHhC-CCCceEEEEccCCCC-CCHHHHHHHHh-cCCCCcEEEEeccCCHHHHHHHHhCCcceE
Q 027234 1 MGFSVTKCNRAEIALDMLRTN-KNGYDIVISDVHMPD-MDGFKLLELVG-LEMDLPVIMMCAHGSKEVVMKGVTHDACDY 77 (226)
Q Consensus 1 lg~~V~~~~~~~eal~~l~~~-~~~~DlVl~D~~mp~-~dG~~l~~~l~-~~~~~pvI~ls~~~~~~~~~~a~~~ga~~y 77 (226)
.||.|..+.++.+|++.+... . ||+||+|+.||+ ++|+++++.++ ..+.+|+|++|+..+.+....++..| +|
T Consensus 28 ~g~~v~~~~~~~~a~~~l~~~~~--~dlvi~d~~l~~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~~--~~ 103 (132)
T 2rdm_A 28 AGFLVTAVSSGAKAIEMLKSGAA--IDGVVTDIRFCQPPDGWQVARVAREIDPNMPIVYISGHAALEWASNGVPDS--II 103 (132)
T ss_dssp TTCEEEEESSHHHHHHHHHTTCC--CCEEEEESCCSSSSCHHHHHHHHHHHCTTCCEEEEESSCCTTHHHHSCTTC--EE
T ss_pred cCCEEEEECCHHHHHHHHHcCCC--CCEEEEeeeCCCCCCHHHHHHHHHhcCCCCCEEEEeCCccHHHHHhhcCCc--ce
Confidence 479999999999999999885 5 999999999997 99999999997 45689999999999888888887776 79
Q ss_pred EeCCCCHHHHHHHHHHHHHHHh
Q 027234 78 LTKPVRIEELKNIWQHVVRKRK 99 (226)
Q Consensus 78 l~KP~~~~~L~~~l~~~~~~~~ 99 (226)
|.||++.++|...++++..+..
T Consensus 104 l~kP~~~~~l~~~i~~~~~~~~ 125 (132)
T 2rdm_A 104 LEKPFTSAQLITAVSQLLNARE 125 (132)
T ss_dssp EESSCCHHHHHHHHHHHHHTTC
T ss_pred EeCCCCHHHHHHHHHHHHhcCC
Confidence 9999999999999999886544
No 97
>3c97_A Signal transduction histidine kinase; structural genomics, signaling, PSI-2, protein structure initiative; 1.70A {Aspergillus oryzae RIB40}
Probab=99.64 E-value=5.7e-16 Score=113.41 Aligned_cols=94 Identities=18% Similarity=0.318 Sum_probs=79.1
Q ss_pred CCcEEEEECCHHHHHHHHHhCCCCceEEEEccCCCCCCHHHHHHHHhc------CCCCcEEEEeccCCHHHHHHHHhCCc
Q 027234 1 MGFSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVGL------EMDLPVIMMCAHGSKEVVMKGVTHDA 74 (226)
Q Consensus 1 lg~~V~~~~~~~eal~~l~~~~~~~DlVl~D~~mp~~dG~~l~~~l~~------~~~~pvI~ls~~~~~~~~~~a~~~ga 74 (226)
.||.|..+.++.+|++.+.... ||+||+|+.||+++|+++++.++. .+.+|+|++|+....... ...|+
T Consensus 33 ~~~~v~~~~~~~~al~~l~~~~--~dlvllD~~lp~~~g~~~~~~l~~~~~~~~~~~~~ii~~s~~~~~~~~---~~~g~ 107 (140)
T 3c97_A 33 CTNDITVVTNGLQALQAYQNRQ--FDVIIMDIQMPVMDGLEAVSEIRNYERTHNTKRASIIAITADTIDDDR---PGAEL 107 (140)
T ss_dssp TCSEEEEESSHHHHHHHHHHSC--CSEEEECTTCCSSCHHHHHHHHHHHHHHHTCCCCCCEEEESSCCSCCC---CCSSC
T ss_pred cCCceEEECCHHHHHHHHhcCC--CCEEEEeCCCCCCcHHHHHHHHHhhhhhcCCCceEEEEEeCccchhHH---HhCCh
Confidence 3788999999999999998866 999999999999999999999974 367899999986654332 27899
Q ss_pred ceEEeCCCCHHHHHHHHHHHHHHHh
Q 027234 75 CDYLTKPVRIEELKNIWQHVVRKRK 99 (226)
Q Consensus 75 ~~yl~KP~~~~~L~~~l~~~~~~~~ 99 (226)
++||.||++.++|..++++++.+..
T Consensus 108 ~~~l~KP~~~~~L~~~i~~~~~~~~ 132 (140)
T 3c97_A 108 DEYVSKPLNPNQLRDVVLTCHSEGA 132 (140)
T ss_dssp SEEEESSCCHHHHHHHHHHHHC---
T ss_pred hheEeCCCCHHHHHHHHHHHhCCCC
Confidence 9999999999999999999876543
No 98
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A*
Probab=99.63 E-value=2.2e-15 Score=118.75 Aligned_cols=91 Identities=25% Similarity=0.378 Sum_probs=83.9
Q ss_pred EEEEECCHHHHHHHHHhCCCCceEEEEccCCCCCCHHHHHHHHhc-CCCCcEEEEeccCCHHHHHHHHhCCcceEEeCCC
Q 027234 4 SVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVGL-EMDLPVIMMCAHGSKEVVMKGVTHDACDYLTKPV 82 (226)
Q Consensus 4 ~V~~~~~~~eal~~l~~~~~~~DlVl~D~~mp~~dG~~l~~~l~~-~~~~pvI~ls~~~~~~~~~~a~~~ga~~yl~KP~ 82 (226)
.|..+.++.+|++.+ .. ||+||+|+.||+++|+++++.++. .+.+|||++|+..+.+....++..||++||.||+
T Consensus 27 ~v~~~~~~~~al~~~--~~--~dlvllD~~lp~~~g~~~~~~lr~~~~~~~ii~lt~~~~~~~~~~~~~~ga~~~l~Kp~ 102 (220)
T 1p2f_A 27 RVKTFLTGEDFLNDE--EA--FHVVVLDVMLPDYSGYEICRMIKETRPETWVILLTLLSDDESVLKGFEAGADDYVTKPF 102 (220)
T ss_dssp EEEEESSHHHHHHCC--SC--CSEEEEESBCSSSBHHHHHHHHHHHCTTSEEEEEESCCSHHHHHHHHHHTCSEEEESSC
T ss_pred CEEEECCHHHHHHhc--CC--CCEEEEeCCCCCCCHHHHHHHHHhcCCCCcEEEEEcCCCHHHHHHHHHcCCCEEEECCC
Confidence 688999999999877 44 999999999999999999999984 4789999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHH
Q 027234 83 RIEELKNIWQHVVRKR 98 (226)
Q Consensus 83 ~~~~L~~~l~~~~~~~ 98 (226)
+.++|...++.++++.
T Consensus 103 ~~~~L~~~i~~~~~~~ 118 (220)
T 1p2f_A 103 NPEILLARVKRFLERE 118 (220)
T ss_dssp CHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHccc
Confidence 9999999999988753
No 99
>1dc7_A NTRC, nitrogen regulation protein; receiver domain, phosphorylation, signal transduction, conformational rearrangement; NMR {Salmonella typhimurium} SCOP: c.23.1.1 PDB: 1j56_A 1krw_A 1krx_A 1ntr_A 1dc8_A*
Probab=99.62 E-value=1.7e-17 Score=118.50 Aligned_cols=95 Identities=31% Similarity=0.532 Sum_probs=86.3
Q ss_pred CCcEEEEECCHHHHHHHHHhCCCCceEEEEccCCCCCCHHHHHHHHh-cCCCCcEEEEeccCCHHHHHHHHhCCcceEEe
Q 027234 1 MGFSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVG-LEMDLPVIMMCAHGSKEVVMKGVTHDACDYLT 79 (226)
Q Consensus 1 lg~~V~~~~~~~eal~~l~~~~~~~DlVl~D~~mp~~dG~~l~~~l~-~~~~~pvI~ls~~~~~~~~~~a~~~ga~~yl~ 79 (226)
.||.|..+.++.++++.+.... ||+||+|+.||+++|+++++.++ ..+.+|+|++|+..+.+....++..|+++|+.
T Consensus 26 ~~~~v~~~~~~~~~~~~~~~~~--~dlvi~d~~~~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~ 103 (124)
T 1dc7_A 26 AGLTCTTFENGNEVLAALASKT--PDVLLSDIRMPGMDGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLP 103 (124)
T ss_dssp TTCCCEECCCTTHHHHHSSSCC--CSCEEECSCSSHHHHCSTHHHHHHHCTTSCCCCBCCSTTSTTTTSSCTTCCCCCBC
T ss_pred CCcEEEEeCCHHHHHHHHhcCC--CCEEEEeeecCCCCHHHHHHHHHhhCCCCCEEEEecCCCHHHHHHHHhcCcceEee
Confidence 3788899999999999998765 99999999999999999999997 45789999999998888888999999999999
Q ss_pred CCCCHHHHHHHHHHHHHH
Q 027234 80 KPVRIEELKNIWQHVVRK 97 (226)
Q Consensus 80 KP~~~~~L~~~l~~~~~~ 97 (226)
||++.++|...++++++.
T Consensus 104 kp~~~~~l~~~i~~~~~~ 121 (124)
T 1dc7_A 104 KPFDIDEAVALVERAISH 121 (124)
T ss_dssp SSCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHh
Confidence 999999999999988754
No 100
>3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein struct initiative; 2.15A {Colwellia psychrerythraea} SCOP: c.23.1.0
Probab=99.62 E-value=4.4e-16 Score=112.79 Aligned_cols=94 Identities=21% Similarity=0.315 Sum_probs=83.2
Q ss_pred CcEEEEECCHHHHHHHHHhCCCCceEEEEccCCCCCCHHHHHHHHh-cCCCCcEEEEeccCCH-----HHHHHHHhCCcc
Q 027234 2 GFSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVG-LEMDLPVIMMCAHGSK-----EVVMKGVTHDAC 75 (226)
Q Consensus 2 g~~V~~~~~~~eal~~l~~~~~~~DlVl~D~~mp~~dG~~l~~~l~-~~~~~pvI~ls~~~~~-----~~~~~a~~~ga~ 75 (226)
|+.|..++++.++++.+.. . ||+||+|+.||+++|+++++.++ ..+.+|+|++|+..+. +....+++.|++
T Consensus 27 ~~~v~~~~~~~~~~~~~~~--~-~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~~~~~~g~~ 103 (135)
T 3eqz_A 27 FGNVEAFQHPRAFLTLSLN--K-QDIIILDLMMPDMDGIEVIRHLAEHKSPASLILISGYDSGVLHSAETLALSCGLNVI 103 (135)
T ss_dssp CSCEEEESCHHHHTTSCCC--T-TEEEEEECCTTTTHHHHHHHHHHHTTCCCEEEEEESSCHHHHHHHHHHHHHTTCEEE
T ss_pred cceeeeecCHHHHHHhhcc--C-CCEEEEeCCCCCCCHHHHHHHHHhCCCCCCEEEEEeccchhHHHHHHHHHHcCCCcc
Confidence 5678999999999988764 3 99999999999999999999997 5578999999998875 677789999999
Q ss_pred eEEeCCCCHHHHHHHHHHHHHHH
Q 027234 76 DYLTKPVRIEELKNIWQHVVRKR 98 (226)
Q Consensus 76 ~yl~KP~~~~~L~~~l~~~~~~~ 98 (226)
+||.||++.++|...++++..+.
T Consensus 104 ~~l~KP~~~~~l~~~l~~~~~~~ 126 (135)
T 3eqz_A 104 NTFTKPINTEVLTCFLTSLSNRQ 126 (135)
T ss_dssp EEEESSCCHHHHHHHHHHHSCCC
T ss_pred eeeCCCCCHHHHHHHHHHHHhhc
Confidence 99999999999999999987544
No 101
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=99.61 E-value=5e-15 Score=107.82 Aligned_cols=91 Identities=19% Similarity=0.307 Sum_probs=83.4
Q ss_pred CCcEEEEECCHHHHHHHHHhCCCCceEEEEccCCCCCCHHHHHHHHhcCC-CCcEEEEeccCCHHHHHHHHhCCcceEEe
Q 027234 1 MGFSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVGLEM-DLPVIMMCAHGSKEVVMKGVTHDACDYLT 79 (226)
Q Consensus 1 lg~~V~~~~~~~eal~~l~~~~~~~DlVl~D~~mp~~dG~~l~~~l~~~~-~~pvI~ls~~~~~~~~~~a~~~ga~~yl~ 79 (226)
.||.|..+.++.+|++.+.... ||+|| ||+++|+++++.++..+ .+|||++|+..+.+....++..|+++||.
T Consensus 41 ~g~~v~~~~~~~~al~~l~~~~--~dlvi----~~~~~g~~~~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~ 114 (137)
T 2pln_A 41 KGFMADVTESLEDGEYLMDIRN--YDLVM----VSDKNALSFVSRIKEKHSSIVVLVSSDNPTSEEEVHAFEQGADDYIA 114 (137)
T ss_dssp TTCEEEEESCHHHHHHHHHHSC--CSEEE----ECSTTHHHHHHHHHHHSTTSEEEEEESSCCHHHHHHHHHTTCSEEEE
T ss_pred cCcEEEEeCCHHHHHHHHHcCC--CCEEE----EcCccHHHHHHHHHhcCCCccEEEEeCCCCHHHHHHHHHcCCceeee
Confidence 4899999999999999999876 99999 99999999999997447 89999999999999999999999999999
Q ss_pred CCC-CHHHHHHHHHHHHHH
Q 027234 80 KPV-RIEELKNIWQHVVRK 97 (226)
Q Consensus 80 KP~-~~~~L~~~l~~~~~~ 97 (226)
||+ +.++|...+++++.+
T Consensus 115 kP~~~~~~l~~~i~~~~~~ 133 (137)
T 2pln_A 115 KPYRSIKALVARIEARLRF 133 (137)
T ss_dssp SSCSCHHHHHHHHHHHTC-
T ss_pred CCCCCHHHHHHHHHHHHhh
Confidence 999 999999999988654
No 102
>3t8y_A CHEB, chemotaxis response regulator protein-glutamate methylesterase; CHEA, hydrolase; 1.90A {Thermotoga maritima}
Probab=99.61 E-value=3e-15 Score=112.88 Aligned_cols=90 Identities=22% Similarity=0.355 Sum_probs=76.9
Q ss_pred EEEECCHHHHHHHHHhCCCCceEEEEccCCCCCCHHHHHHHHhcCCCCcEEEEeccCCHH--HHHHHHhCCcceEEeCCC
Q 027234 5 VTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVGLEMDLPVIMMCAHGSKE--VVMKGVTHDACDYLTKPV 82 (226)
Q Consensus 5 V~~~~~~~eal~~l~~~~~~~DlVl~D~~mp~~dG~~l~~~l~~~~~~pvI~ls~~~~~~--~~~~a~~~ga~~yl~KP~ 82 (226)
|..+.++.+|++.+.... ||+||+|+.||+++|+++++.++....+|+|++|+..+.. ...+++..||++||.||+
T Consensus 54 v~~~~~~~~al~~l~~~~--~dlvilD~~l~~~~g~~l~~~lr~~~~~~ii~~s~~~~~~~~~~~~~~~~ga~~~l~KP~ 131 (164)
T 3t8y_A 54 VGFAKDGLEAVEKAIELK--PDVITMDIEMPNLNGIEALKLIMKKAPTRVIMVSSLTEEGAAITIEALRNGAVDFITKPH 131 (164)
T ss_dssp EEEESSHHHHHHHHHHHC--CSEEEECSSCSSSCHHHHHHHHHHHSCCEEEEEESSCCTTCHHHHHHHHTTCCEEEECSS
T ss_pred EEecCCHHHHHHHhccCC--CCEEEEeCCCCCCCHHHHHHHHHhcCCceEEEEecCCccchHHHHHHHHcCcCEEEeCCC
Confidence 458999999999999876 9999999999999999999999854449999999877653 677899999999999999
Q ss_pred C---------HHHHHHHHHHHHH
Q 027234 83 R---------IEELKNIWQHVVR 96 (226)
Q Consensus 83 ~---------~~~L~~~l~~~~~ 96 (226)
+ .++|...+++++.
T Consensus 132 ~~~~l~~r~~~~~l~~~i~~~~~ 154 (164)
T 3t8y_A 132 GSISLTFRQVAPELLEKIRQAMN 154 (164)
T ss_dssp SSSCGGGGGGHHHHHHHHHHHTT
T ss_pred CHHHHHHHhhhHHHHHHHHHHhC
Confidence 9 5666666666553
No 103
>1qo0_D AMIR; binding protein, gene regulator, receptor; 2.25A {Pseudomonas aeruginosa} SCOP: c.23.1.3
Probab=99.61 E-value=1.1e-15 Score=118.44 Aligned_cols=92 Identities=14% Similarity=0.205 Sum_probs=81.6
Q ss_pred CcEEEEECCHHHHHHHHHhCCCCceEEEEccCCCCCCHHHHHHHHhcC-CCCcEEEEeccCCHHHHHHHHhCCcceEEeC
Q 027234 2 GFSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVGLE-MDLPVIMMCAHGSKEVVMKGVTHDACDYLTK 80 (226)
Q Consensus 2 g~~V~~~~~~~eal~~l~~~~~~~DlVl~D~~mp~~dG~~l~~~l~~~-~~~pvI~ls~~~~~~~~~~a~~~ga~~yl~K 80 (226)
||.|..+.++.+|+ ... ||+||+|+.||+++|+ +++.++.. +.+|||++|+..+.+....+++.|+++||.|
T Consensus 36 g~~v~~~~~~~~al----~~~--~dlvl~D~~mp~~~g~-l~~~~~~~~~~~~ii~lt~~~~~~~~~~a~~~ga~~~l~K 108 (196)
T 1qo0_D 36 GCSVRQCWPPPEAF----DVP--VDVVFTSIFQNRHHDE-IAALLAAGTPRTTLVALVEYESPAVLSQIIELECHGVITQ 108 (196)
T ss_dssp TCEEEEECSCCSSC----SSC--CSEEEEECCSSTHHHH-HHHHHHHSCTTCEEEEEECCCSHHHHHHHHHHTCSEEEES
T ss_pred CCeEEEecCchhhC----CCC--CCEEEEeCCCCccchH-HHHHHhccCCCCCEEEEEcCCChHHHHHHHHcCCCeeEec
Confidence 78888888887766 334 9999999999999999 88888765 8899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhh
Q 027234 81 PVRIEELKNIWQHVVRKRKN 100 (226)
Q Consensus 81 P~~~~~L~~~l~~~~~~~~~ 100 (226)
|++.++|...++.++.....
T Consensus 109 P~~~~~L~~~l~~~~~~~~~ 128 (196)
T 1qo0_D 109 PLDAHRVLPVLVSARRISEE 128 (196)
T ss_dssp SCCGGGHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHHHHH
Confidence 99999999999988765543
No 104
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=99.59 E-value=2.7e-15 Score=105.65 Aligned_cols=90 Identities=21% Similarity=0.226 Sum_probs=81.1
Q ss_pred CCcEEEEECCHHHHHHHHHhCCCCceEEEEccCCCCCCHHHHHHHHhcC---CCCcEEEEeccCCHHHHHHHHhCCcceE
Q 027234 1 MGFSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVGLE---MDLPVIMMCAHGSKEVVMKGVTHDACDY 77 (226)
Q Consensus 1 lg~~V~~~~~~~eal~~l~~~~~~~DlVl~D~~mp~~dG~~l~~~l~~~---~~~pvI~ls~~~~~~~~~~a~~~ga~~y 77 (226)
.||+|..+.++.++++.+.... ||+||+|+.||+++|+++++.++.. +.+|+|++|+..+.. .++..|+++|
T Consensus 24 ~g~~v~~~~~~~~~~~~l~~~~--~dlii~d~~~~~~~~~~~~~~l~~~~~~~~~~ii~~~~~~~~~---~~~~~g~~~~ 98 (119)
T 2j48_A 24 AGFKVIWLVDGSTALDQLDLLQ--PIVILMAWPPPDQSCLLLLQHLREHQADPHPPLVLFLGEPPVD---PLLTAQASAI 98 (119)
T ss_dssp TTCEEEEESCHHHHHHHHHHHC--CSEEEEECSTTCCTHHHHHHHHHHTCCCSSCCCEEEESSCCSS---HHHHHHCSEE
T ss_pred CCcEEEEecCHHHHHHHHHhcC--CCEEEEecCCCCCCHHHHHHHHHhccccCCCCEEEEeCCCCch---hhhhcCHHHh
Confidence 4899999999999999999876 9999999999999999999999744 679999999887766 8899999999
Q ss_pred EeCCCCHHHHHHHHHHHH
Q 027234 78 LTKPVRIEELKNIWQHVV 95 (226)
Q Consensus 78 l~KP~~~~~L~~~l~~~~ 95 (226)
+.||++.++|...+++++
T Consensus 99 l~kp~~~~~l~~~l~~~~ 116 (119)
T 2j48_A 99 LSKPLDPQLLLTTLQGLC 116 (119)
T ss_dssp CSSCSTTHHHHHHHHTTC
T ss_pred ccCCCCHHHHHHHHHHHh
Confidence 999999999998887654
No 105
>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, SY dimer, signaling protein; NMR {Helicobacter pylori}
Probab=99.56 E-value=9.4e-15 Score=115.29 Aligned_cols=90 Identities=19% Similarity=0.315 Sum_probs=83.7
Q ss_pred CcEEEEECCHHHHHHHHHhCCCCceEEEEccCCCCCCHHHHHHHHhcCC-CCcEEEEeccCCHHHHHHHHhCCcceEEeC
Q 027234 2 GFSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVGLEM-DLPVIMMCAHGSKEVVMKGVTHDACDYLTK 80 (226)
Q Consensus 2 g~~V~~~~~~~eal~~l~~~~~~~DlVl~D~~mp~~dG~~l~~~l~~~~-~~pvI~ls~~~~~~~~~~a~~~ga~~yl~K 80 (226)
||.|..+.++.+|++.+.... ||+|| ||+++|+++++.++..+ .+|||++|+..+.+....++..||++||.|
T Consensus 24 g~~v~~~~~~~~al~~l~~~~--~dlvi----lp~~~g~~~~~~lr~~~~~~~ii~lt~~~~~~~~~~~~~~Ga~~~l~K 97 (223)
T 2hqr_A 24 GFMADVTESLEDGEYLMDIRN--YDLVM----VSDKNALSFVSRIKEKHSSIVVLVSSDNPTSEEEVHAFEQGADDYIAK 97 (223)
T ss_dssp TCCEEEESSHHHHHHHHTTSC--CSEEE----ECCTTHHHHHHHHHHHCTTSEEEEEESSCCHHHHHHHHHHTCSEEEET
T ss_pred CcEEEEECCHHHHHHHHhcCC--CCEEE----eCCCCHHHHHHHHHhCCCCCcEEEEECCCCHHHHHHHHHcCCCEEEEC
Confidence 789999999999999998866 99999 99999999999997446 899999999999999999999999999999
Q ss_pred CC-CHHHHHHHHHHHHHH
Q 027234 81 PV-RIEELKNIWQHVVRK 97 (226)
Q Consensus 81 P~-~~~~L~~~l~~~~~~ 97 (226)
|+ +.++|...++.++++
T Consensus 98 p~~~~~~L~~~i~~~~~~ 115 (223)
T 2hqr_A 98 PYRSIKALVARIEARLRF 115 (223)
T ss_dssp TCSCTHHHHHHHHHHTSS
T ss_pred CCCCHHHHHHHHHHHhcc
Confidence 99 999999999998754
No 106
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=99.55 E-value=3.2e-15 Score=109.02 Aligned_cols=90 Identities=20% Similarity=0.247 Sum_probs=78.1
Q ss_pred CCcEEEEECCHHHHHHHHHh-CCCCceEEEEccCCCCCCHHHHHHHHhc-CCCCcEEEEe-ccCCHHHHHHHHhCCcceE
Q 027234 1 MGFSVTKCNRAEIALDMLRT-NKNGYDIVISDVHMPDMDGFKLLELVGL-EMDLPVIMMC-AHGSKEVVMKGVTHDACDY 77 (226)
Q Consensus 1 lg~~V~~~~~~~eal~~l~~-~~~~~DlVl~D~~mp~~dG~~l~~~l~~-~~~~pvI~ls-~~~~~~~~~~a~~~ga~~y 77 (226)
.||.|..+.++.+|++.+.. .. ||+||+|+.||+++|+++++.++. .+.+|+|++| +..+... .+++ +++|
T Consensus 38 ~g~~v~~~~~~~~al~~l~~~~~--~dlvilD~~l~~~~g~~~~~~l~~~~~~~~ii~ls~~~~~~~~-~~~~---~~~~ 111 (138)
T 2b4a_A 38 LGAEVTVHPSGSAFFQHRSQLST--CDLLIVSDQLVDLSIFSLLDIVKEQTKQPSVLILTTGRHELIE-SSEH---NLSY 111 (138)
T ss_dssp TTCEEEEESSHHHHHHTGGGGGS--CSEEEEETTCTTSCHHHHHHHHTTSSSCCEEEEEESCC--CCC-CSSS---CEEE
T ss_pred cCCEEEEeCCHHHHHHHHHhCCC--CCEEEEeCCCCCCCHHHHHHHHHhhCCCCCEEEEECCCCCHHH-HHHH---HHhe
Confidence 47999999999999999988 76 999999999999999999999984 5689999999 8776665 5665 9999
Q ss_pred EeCCCCHHHHHHHHHHHHH
Q 027234 78 LTKPVRIEELKNIWQHVVR 96 (226)
Q Consensus 78 l~KP~~~~~L~~~l~~~~~ 96 (226)
|.||++.++|...+++++.
T Consensus 112 l~KP~~~~~L~~~i~~~~~ 130 (138)
T 2b4a_A 112 LQKPFAISELRAAIDYHKP 130 (138)
T ss_dssp EESSCCHHHHHHHHHHTCC
T ss_pred eeCCCCHHHHHHHHHHHHH
Confidence 9999999999999987654
No 107
>1a2o_A CHEB methylesterase; bacterial chemotaxis, adaptation, serine hydrolase; 2.40A {Salmonella typhimurium} SCOP: c.23.1.1 c.40.1.1
Probab=99.52 E-value=5.5e-14 Score=118.79 Aligned_cols=94 Identities=28% Similarity=0.422 Sum_probs=81.3
Q ss_pred CcE-EEEECCHHHHHHHHHhCCCCceEEEEccCCCCCCHHHHHHHHhcCCCCcEEEEeccCCH--HHHHHHHhCCcceEE
Q 027234 2 GFS-VTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVGLEMDLPVIMMCAHGSK--EVVMKGVTHDACDYL 78 (226)
Q Consensus 2 g~~-V~~~~~~~eal~~l~~~~~~~DlVl~D~~mp~~dG~~l~~~l~~~~~~pvI~ls~~~~~--~~~~~a~~~ga~~yl 78 (226)
||+ |..+.++.+|++.+.... ||+|++|+.||++||+++++.|+....+|||++|+..+. +...++++.|+++||
T Consensus 28 g~~vv~~a~~~~eAl~~l~~~~--pDlVllDi~mp~~dGlell~~l~~~~p~pVIvlS~~~~~~~~~~~~al~~Ga~d~l 105 (349)
T 1a2o_A 28 DMEMVATAPDPLVARDLIKKFN--PDVLTLDVEMPRMDGLDFLEKLMRLRPMPVVMVSSLTGKGSEVTLRALELGAIDFV 105 (349)
T ss_dssp TEEEEEEESSHHHHHHHHHHHC--CSEEEEECCCSSSCHHHHHHHHHHSSCCCEEEEECCTHHHHHHHHHHHHHTCCEEE
T ss_pred CcEEEEEeCCHHHHHHHHhccC--CCEEEEECCCCCCCHHHHHHHHHhcCCCcEEEEECCCcccHHHHHHHHhCCceEEE
Confidence 678 569999999999999876 999999999999999999999985444999999998775 458899999999999
Q ss_pred eCCCCH---------HHHHHHHHHHHHH
Q 027234 79 TKPVRI---------EELKNIWQHVVRK 97 (226)
Q Consensus 79 ~KP~~~---------~~L~~~l~~~~~~ 97 (226)
.||++. ++|...++.+.+.
T Consensus 106 ~KP~~~~~~~l~~~~~~L~~~I~~~~~~ 133 (349)
T 1a2o_A 106 TKPQLGIREGMLAYSEMIAEKVRTAARA 133 (349)
T ss_dssp ECSSSSCSSCHHHHHHHHHHHHHHHHHC
T ss_pred ECCCCccchhHHHHHHHHHHHHHHHHhh
Confidence 999983 7777777776553
No 108
>3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A*
Probab=99.46 E-value=5.7e-14 Score=113.90 Aligned_cols=80 Identities=18% Similarity=0.273 Sum_probs=66.1
Q ss_pred CcEEEEECCHHHHHHHHHhCCCCceEEEEccCCCCCCHHHHHHHHhcCCCCcEEEEeccCCHHHHHHHHhCCcceEEeCC
Q 027234 2 GFSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVGLEMDLPVIMMCAHGSKEVVMKGVTHDACDYLTKP 81 (226)
Q Consensus 2 g~~V~~~~~~~eal~~l~~~~~~~DlVl~D~~mp~~dG~~l~~~l~~~~~~pvI~ls~~~~~~~~~~a~~~ga~~yl~KP 81 (226)
||.|..+ ++.+++..+.... ||+||+|++||++||+++++.++.. .+|||++|+..+.+...++++.||++||.||
T Consensus 29 ~~~v~~~-~~~~~~~~~~~~~--~dlvllD~~mP~~~G~~~~~~lr~~-~~pvi~lt~~~~~~~~~~a~~~Ga~dyl~Kp 104 (259)
T 3luf_A 29 GLEIDAF-DTLEGARHCQGDE--YVVALVDLTLPDAPSGEAVKVLLER-GLPVVILTADISEDKREAWLEAGVLDYVMKD 104 (259)
T ss_dssp CCEEEEE-SSTGGGTTCCTTT--EEEEEEESCBTTBTTSHHHHHHHHT-TCCEEEEECC-CHHHHHHHHHTTCCEEEECS
T ss_pred CeEEEEe-ChHHHHHHhhcCC--CcEEEEeCCCCCCCHHHHHHHHHhC-CCCEEEEEccCCHHHHHHHHHCCCcEEEeCC
Confidence 5666544 5556665555544 9999999999999999999999753 6899999999999999999999999999999
Q ss_pred CCHH
Q 027234 82 VRIE 85 (226)
Q Consensus 82 ~~~~ 85 (226)
+...
T Consensus 105 ~~~~ 108 (259)
T 3luf_A 105 SRHS 108 (259)
T ss_dssp SHHH
T ss_pred chhH
Confidence 6543
No 109
>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}
Probab=99.44 E-value=8.8e-14 Score=128.38 Aligned_cols=97 Identities=9% Similarity=0.123 Sum_probs=86.6
Q ss_pred CCcEEEEECCHHHHHHHHHhCCCCceEEEEccCCCC----CCHHHHHHHHh-cCCCCcEEEEeccCC-HHHHHHHHhCCc
Q 027234 1 MGFSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPD----MDGFKLLELVG-LEMDLPVIMMCAHGS-KEVVMKGVTHDA 74 (226)
Q Consensus 1 lg~~V~~~~~~~eal~~l~~~~~~~DlVl~D~~mp~----~dG~~l~~~l~-~~~~~pvI~ls~~~~-~~~~~~a~~~ga 74 (226)
.||+|..+.++++|+..+.+. ..||+||+|++||+ +||+++++.|+ ..+.+|||++|+..+ .+....++..||
T Consensus 31 ~g~~v~~a~~g~~al~~~~~~-~~~d~vilDi~lp~~~~~~~G~~ll~~iR~~~~~iPIi~lTa~~~~~~d~~~~l~~ga 109 (755)
T 2vyc_A 31 QNVTVIKSTSFDDGFAILSSN-EAIDCLMFSYQMEHPDEHQNVRQLIGKLHERQQNVPVFLLGDREKALAAMDRDLLELV 109 (755)
T ss_dssp TTCEEEEESSHHHHHHHHTTT-CCCSEEEEECCCCSHHHHHHHHHHHHHHHHHSTTCCEEEEECHHHHHHTCSHHHHHHC
T ss_pred CCCEEEEECCHHHHHHHHhcC-CCCcEEEEeCCCCcccccccHHHHHHHHHHhCCCCCEEEEecCCcchhhccHhHhhcC
Confidence 389999999999999999874 23999999999999 99999999998 456899999999877 677888899999
Q ss_pred ceEEeCCCCHHH-HHHHHHHHHHHH
Q 027234 75 CDYLTKPVRIEE-LKNIWQHVVRKR 98 (226)
Q Consensus 75 ~~yl~KP~~~~~-L~~~l~~~~~~~ 98 (226)
+||+.||++..+ |...|+.++++.
T Consensus 110 ddyi~kpf~~~efl~~ri~a~~rr~ 134 (755)
T 2vyc_A 110 DEFAWILEDTADFIAGRAVAAMTRY 134 (755)
T ss_dssp SEEEETTTSCHHHHHHHHHHHHHHH
T ss_pred CceEeCCCCCHHHHHHHHHHHHHHh
Confidence 999999999999 888898888664
No 110
>3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima} PDB: 2lle_A
Probab=99.36 E-value=5.5e-13 Score=105.69 Aligned_cols=92 Identities=21% Similarity=0.347 Sum_probs=78.8
Q ss_pred cEEEEECCHHHHHHHHHhCCCCceEEEEccCCCCCCHHHHHHHHhc-CCCCcEEEEeccCCHHHHHHHHhCCcceEEeCC
Q 027234 3 FSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVGL-EMDLPVIMMCAHGSKEVVMKGVTHDACDYLTKP 81 (226)
Q Consensus 3 ~~V~~~~~~~eal~~l~~~~~~~DlVl~D~~mp~~dG~~l~~~l~~-~~~~pvI~ls~~~~~~~~~~a~~~ga~~yl~KP 81 (226)
+.|..+.++.+|++.+.... ||+||+|+.||+++|+++++.++. .+..++++++.....+...++++.|+++|+.||
T Consensus 6 ~~v~~~~~~~~a~~~~~~~~--~dlvl~D~~~p~~~g~~~~~~l~~~~~~~~i~vi~~~~~~~~~~~~~~~Ga~~~l~kp 83 (237)
T 3cwo_X 6 LIVDDATNGREAVEKYKELK--PDIVTMDITMPEMNGIDAIKEIMKIDPNAKIIVCSAMGQQAMVIEAIKAGAKDFIVNT 83 (237)
T ss_dssp EEEECCCSSSTTHHHHHHHC--CSCEEEECCSTTSSHHHHHHHHHHHSSSCCEEEECCSSTHHHHHHHHHTTCCEEEESH
T ss_pred EEEEECCCHHHHHHHHHhcC--CCEEEEeCCCCCCCHHHHHHHHHHhCCCCCEEEEECCCCHHHHHHHHHCCHHheEeCC
Confidence 56778899999999999876 999999999999999999999873 456677777777778889999999999999999
Q ss_pred --CCHHHHHHHHHHHHH
Q 027234 82 --VRIEELKNIWQHVVR 96 (226)
Q Consensus 82 --~~~~~L~~~l~~~~~ 96 (226)
++..++...+.+.+.
T Consensus 84 ~~~~~~~l~~~i~~~~~ 100 (237)
T 3cwo_X 84 AAVENPSLITQIAQTFG 100 (237)
T ss_dssp HHHHCTHHHHHHHHHHT
T ss_pred cccChHHHHHHHHHHhC
Confidence 777788777776654
No 111
>1w25_A Stalked-cell differentiation controlling protein; two-component system, ggdef domain, cyclic dinucleotide, cyclic-digmp; HET: C2E; 2.70A {Caulobacter vibrioides} SCOP: c.23.1.1 c.23.1.1 d.58.29.2 PDB: 2v0n_A* 2wb4_A*
Probab=98.96 E-value=1.3e-08 Score=88.49 Aligned_cols=96 Identities=19% Similarity=0.307 Sum_probs=79.8
Q ss_pred cEEEEECCHHHHHHHHHhCCCCceEEEEccCCCCCCHHHHHHHHhcC---CCCcEEEEeccCCHHHHHHHHhCCcceEEe
Q 027234 3 FSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVGLE---MDLPVIMMCAHGSKEVVMKGVTHDACDYLT 79 (226)
Q Consensus 3 ~~V~~~~~~~eal~~l~~~~~~~DlVl~D~~mp~~dG~~l~~~l~~~---~~~pvI~ls~~~~~~~~~~a~~~ga~~yl~ 79 (226)
+.+....++.+++ ...... ||++++|..||+|+|+++++.++.. ..+|++++|+.........++..|+++|+.
T Consensus 176 ~~~~~~~~~~~~~-~~~~~~--~dlil~D~~mp~~dG~~~~~~ir~~~~~~~~pii~lt~~~~~~~~~~~l~~Ga~d~~~ 252 (459)
T 1w25_A 176 HRPVIESDPEKAK-ISAGGP--VDLVIVNAAAKNFDGLRFTAALRSEERTRQLPVLAMVDPDDRGRMVKALEIGVNDILS 252 (459)
T ss_dssp SEEEEECCHHHHH-HHHHSS--CSEEEEETTCSSSCHHHHHHHHHTSGGGTTCCEEEEECTTCHHHHHHHHHTTCCEEEE
T ss_pred cceeeccCHHHHh-hhccCC--CCEEEEecCCCCCcHHHHHHHHHhCccccCCcEEEEcCCCchHHHHHHHhcccccccc
Confidence 4456677777776 334444 9999999999999999999999743 468999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhhh
Q 027234 80 KPVRIEELKNIWQHVVRKRKNE 101 (226)
Q Consensus 80 KP~~~~~L~~~l~~~~~~~~~~ 101 (226)
||++.+++...+..+.......
T Consensus 253 kp~~~~~l~~~v~~~~~~~~~~ 274 (459)
T 1w25_A 253 RPIDPQELSARVKTQIQRKRYT 274 (459)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999998888877655443
No 112
>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*
Probab=97.48 E-value=0.00015 Score=66.44 Aligned_cols=93 Identities=16% Similarity=0.172 Sum_probs=70.3
Q ss_pred CCcEEEEECCHHHHHHHHHhCCCCceEEEEccCCCCCCHHHHHHHHh-cCCCCcEEEEeccCCHHHHHHHHhCCcceEEe
Q 027234 1 MGFSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVG-LEMDLPVIMMCAHGSKEVVMKGVTHDACDYLT 79 (226)
Q Consensus 1 lg~~V~~~~~~~eal~~l~~~~~~~DlVl~D~~mp~~dG~~l~~~l~-~~~~~pvI~ls~~~~~~~~~~a~~~ga~~yl~ 79 (226)
.||+|..+.++++|+..++++ ..+++||+|+.|+ +.++++.|+ .++++||++++............-.++++|+.
T Consensus 29 ~g~~V~~a~s~~Da~~~i~~~-~~i~avIld~d~~---~~~ll~~Ir~~~~~iPVFl~~~~~~~~~~~~~~~~~~~~~~~ 104 (715)
T 3n75_A 29 LNFQIVYPNDRDDLLKLIENN-ARLCGVIFDWDKY---NLELCEEISKMNENLPLYAFANTYSTLDVSLNDLRLQISFFE 104 (715)
T ss_dssp TTCEEECCSSHHHHHHHHHHC-TTEEEEEEEHHHH---HHHHHHHHHHHCTTCEEEEECCTTCCCCGGGTTSCCEEEEEC
T ss_pred CCcEEEEeCCHHHHHHHHHhC-CCceEEEEecccc---HHHHHHHHHHhCCCCCEEEEecCCcccccchhhhhccCeEEE
Confidence 389999999999999999876 4589999999886 788999997 67899999998875433222112357899998
Q ss_pred CCC-CHHHHHHHHHHHHHH
Q 027234 80 KPV-RIEELKNIWQHVVRK 97 (226)
Q Consensus 80 KP~-~~~~L~~~l~~~~~~ 97 (226)
+.. +++.+...+.+..+.
T Consensus 105 ~~~~~~~~~~~~~~~~~~~ 123 (715)
T 3n75_A 105 YALGAAEDIANKIKQTTDE 123 (715)
T ss_dssp CCTTCHHHHHHHHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHHHH
Confidence 875 556655556555443
No 113
>3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima} PDB: 2lle_A
Probab=97.21 E-value=0.0022 Score=49.76 Aligned_cols=82 Identities=16% Similarity=0.201 Sum_probs=63.3
Q ss_pred CHHHHHHHHHhCCCCceEEEEcc-CCCCCCH--HHHHHHHhcCCCCcEEEEeccCCHHHHHHHHhCCcceEE------eC
Q 027234 10 RAEIALDMLRTNKNGYDIVISDV-HMPDMDG--FKLLELVGLEMDLPVIMMCAHGSKEVVMKGVTHDACDYL------TK 80 (226)
Q Consensus 10 ~~~eal~~l~~~~~~~DlVl~D~-~mp~~dG--~~l~~~l~~~~~~pvI~ls~~~~~~~~~~a~~~ga~~yl------~K 80 (226)
+..+.+..+.... ..+++++++ .++.++| .++++.++...++|+|.+++....+...++++.|+++++ .+
T Consensus 131 ~~~~~i~~~~~~~-~~~vli~~~~~~g~~~g~~~~~i~~~~~~~~~Pvia~~g~~~~~~~~~~~~~G~~~~~vg~a~~~~ 209 (237)
T 3cwo_X 131 LLRDWVVEVEKRG-AGEILLTSIDRDGTKSGYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLAGADAALAASVFHFR 209 (237)
T ss_dssp EHHHHHHHHHHHT-CSEEEEEETTTTTCCSCCCHHHHHHHGGGCCSCEEEESCCCSHHHHHHHHHHTCSEEEESHHHHTT
T ss_pred CHHHHHHHHhhcC-CCeEEEEecCCCCccccccHHHHHHHHHhcCCCEEecCCCCCHHHHHHHHHcCcHHHhhhHHHHcC
Confidence 4556655555432 257899987 6677777 456777776678999999999999999999999999985 78
Q ss_pred CCCHHHHHHHHH
Q 027234 81 PVRIEELKNIWQ 92 (226)
Q Consensus 81 P~~~~~L~~~l~ 92 (226)
|++..++...++
T Consensus 210 ~~~~~~~~~~l~ 221 (237)
T 3cwo_X 210 EIDVRELKEYLK 221 (237)
T ss_dssp SSCHHHHHHHHH
T ss_pred CCCHHHHHHHHH
Confidence 999998877543
No 114
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=96.15 E-value=0.0029 Score=43.04 Aligned_cols=40 Identities=18% Similarity=0.007 Sum_probs=33.6
Q ss_pred HHHHhhCCCCCCHHHHHHHhhhhhhhhhcccCCC-CCCCCC
Q 027234 180 KILELMNIPGLTRENVASHLQKHRLYLSRLSGVS-PQQGNS 219 (226)
Q Consensus 180 ~I~~~~~~~~lt~~~va~~l~~~r~~l~r~~~~~-~~~~~~ 219 (226)
.|.+++..+.++++++|+++++|+++|+|+|+.. ++.+..
T Consensus 10 ~i~~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~~g~s~~~ 50 (103)
T 3lsg_A 10 IIEESYTDSQFTLSVLSEKLDLSSGYLSIMFKKNFGIPFQD 50 (103)
T ss_dssp HHHHHTTCTTCCHHHHHHHTTCCHHHHHHHHHHHHSSCHHH
T ss_pred HHHHHccCCCCCHHHHHHHHCcCHHHHHHHHHHHHCcCHHH
Confidence 6888998889999999999999999999988754 554433
No 115
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=95.48 E-value=0.0063 Score=41.62 Aligned_cols=41 Identities=20% Similarity=0.058 Sum_probs=33.3
Q ss_pred HHHHhhCCCCCCHHHHHHHhhhhhhhhhcccCCC-CCCCCCC
Q 027234 180 KILELMNIPGLTRENVASHLQKHRLYLSRLSGVS-PQQGNSF 220 (226)
Q Consensus 180 ~I~~~~~~~~lt~~~va~~l~~~r~~l~r~~~~~-~~~~~~~ 220 (226)
.|.+++.++.++++++|+++++|+++|+|+|+.. ++.+..|
T Consensus 11 ~i~~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~~G~s~~~~ 52 (107)
T 2k9s_A 11 YISDHLADSNFDIASVAQHVCLSPSRLSHLFRQQLGISVLSW 52 (107)
T ss_dssp HHHHTSSCSSCCHHHHHHHTTSCHHHHHHHHHHHHSSCHHHH
T ss_pred HHHHHhccCCCCHHHHHHHHCCCHHHHHHHHHHHHCcCHHHH
Confidence 5888888679999999999999999999988753 5554433
No 116
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=95.37 E-value=0.0012 Score=46.35 Aligned_cols=40 Identities=15% Similarity=0.010 Sum_probs=32.7
Q ss_pred HHHHhhCCCCCCHHHHHHHhhhhhhhhhcccCCCCCCCCCC
Q 027234 180 KILELMNIPGLTRENVASHLQKHRLYLSRLSGVSPQQGNSF 220 (226)
Q Consensus 180 ~I~~~~~~~~lt~~~va~~l~~~r~~l~r~~~~~~~~~~~~ 220 (226)
.|.+++.. .++++++|.++++|+++|+|+|+..++.+..|
T Consensus 15 ~i~~~~~~-~~~~~~lA~~~~~S~~~l~r~fk~~G~s~~~~ 54 (120)
T 3mkl_A 15 VINNNIAH-EWTLARIASELLMSPSLLKKKLREEETSYSQL 54 (120)
T ss_dssp HHHTSTTS-CCCHHHHHHHTTCCHHHHHHHHHHTTCCHHHH
T ss_pred HHHHhccC-CCCHHHHHHHHCcCHHHHHHHHHHcCCCHHHH
Confidence 57777776 89999999999999999999988765554443
No 117
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=95.22 E-value=0.006 Score=41.80 Aligned_cols=39 Identities=15% Similarity=0.250 Sum_probs=32.0
Q ss_pred HHHHhhCCCCCCHHHHHHHhhhhhhhhhcccCCC-CCCCCC
Q 027234 180 KILELMNIPGLTRENVASHLQKHRLYLSRLSGVS-PQQGNS 219 (226)
Q Consensus 180 ~I~~~~~~~~lt~~~va~~l~~~r~~l~r~~~~~-~~~~~~ 219 (226)
.|.+++.. .++++++|+++++|+++|+|+|+.. ++.+..
T Consensus 13 ~i~~~~~~-~~~~~~lA~~~~~S~~~l~r~fk~~~G~s~~~ 52 (108)
T 3oou_A 13 YITEHFSE-GMSLKTLGNDFHINAVYLGQLFQKEMGEHFTD 52 (108)
T ss_dssp HHHHHTTS-CCCHHHHHHHHTSCHHHHHHHHHHHHSSCHHH
T ss_pred HHHHHhcC-CCCHHHHHHHHCcCHHHHHHHHHHHHCcCHHH
Confidence 58888877 8999999999999999999988654 554433
No 118
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=95.19 E-value=0.011 Score=40.35 Aligned_cols=40 Identities=13% Similarity=-0.115 Sum_probs=32.1
Q ss_pred HHHHhhCCCCCCHHHHHHHhhhhhhhhhcccCCC-CCCCCCC
Q 027234 180 KILELMNIPGLTRENVASHLQKHRLYLSRLSGVS-PQQGNSF 220 (226)
Q Consensus 180 ~I~~~~~~~~lt~~~va~~l~~~r~~l~r~~~~~-~~~~~~~ 220 (226)
.|.+++.. .++++++|+++++|+++|+|+|+.. ++.+..|
T Consensus 10 ~i~~~~~~-~~~~~~lA~~~~~s~~~l~r~fk~~~G~s~~~~ 50 (108)
T 3mn2_A 10 YIEANWMR-PITIEKLTALTGISSRGIFKAFQRSRGYSPMAF 50 (108)
T ss_dssp HHHHHTTS-CCCHHHHHHHHTCCHHHHHHHHHHHTSSCHHHH
T ss_pred HHHHcccC-CCCHHHHHHHHCCCHHHHHHHHHHHhCcCHHHH
Confidence 58888877 5999999999999999999988753 5554433
No 119
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=95.01 E-value=0.0081 Score=41.50 Aligned_cols=40 Identities=15% Similarity=0.102 Sum_probs=31.8
Q ss_pred HHHHhhCCCCCCHHHHHHHhhhhhhhhhcccCCC-CCCCCCC
Q 027234 180 KILELMNIPGLTRENVASHLQKHRLYLSRLSGVS-PQQGNSF 220 (226)
Q Consensus 180 ~I~~~~~~~~lt~~~va~~l~~~r~~l~r~~~~~-~~~~~~~ 220 (226)
.|.+++.. .++++++|.++++|+++|+|+|+.. ++.+..|
T Consensus 15 ~i~~~~~~-~~~~~~lA~~~~~S~~~l~r~fk~~~G~s~~~~ 55 (113)
T 3oio_A 15 LMEANIEE-PLSTDDIAYYVGVSRRQLERLFKQYLGTVPSKY 55 (113)
T ss_dssp HHHTCSSS-CCCHHHHHHHHTSCHHHHHHHHHHHTSSCHHHH
T ss_pred HHHhhhcC-CCCHHHHHHHHCcCHHHHHHHHHHHHCcCHHHH
Confidence 48788877 4999999999999999999987654 5554433
No 120
>1wv2_A Thiazole moeity, thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI; 2.90A {Pseudomonas aeruginosa} SCOP: c.1.31.1
Probab=94.83 E-value=0.37 Score=38.30 Aligned_cols=91 Identities=14% Similarity=0.085 Sum_probs=64.9
Q ss_pred CcEEE--EECCHHHHHHHHHhCCCCceEEEEccCCCC-----CCHHHHHHHHhcCCCCcEEEEeccCCHHHHHHHHhCCc
Q 027234 2 GFSVT--KCNRAEIALDMLRTNKNGYDIVISDVHMPD-----MDGFKLLELVGLEMDLPVIMMCAHGSKEVVMKGVTHDA 74 (226)
Q Consensus 2 g~~V~--~~~~~~eal~~l~~~~~~~DlVl~D~~mp~-----~dG~~l~~~l~~~~~~pvI~ls~~~~~~~~~~a~~~ga 74 (226)
||.|. +.+|...|-.+.. .. +++| +.+..|- ...+++++.+++..++|||+=.+-...+.+..++++|+
T Consensus 135 Gf~Vlpy~~dd~~~akrl~~-~G--~~aV-mPlg~pIGsG~Gi~~~~lI~~I~e~~~vPVI~eGGI~TPsDAa~AmeLGA 210 (265)
T 1wv2_A 135 GFDVMVYTSDDPIIARQLAE-IG--CIAV-MPLAGLIGSGLGICNPYNLRIILEEAKVPVLVDAGVGTASDAAIAMELGC 210 (265)
T ss_dssp TCEEEEEECSCHHHHHHHHH-SC--CSEE-EECSSSTTCCCCCSCHHHHHHHHHHCSSCBEEESCCCSHHHHHHHHHHTC
T ss_pred CCEEEEEeCCCHHHHHHHHH-hC--CCEE-EeCCccCCCCCCcCCHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHHHcCC
Confidence 78877 4556666665544 33 7887 5544432 22378889888778899999888889999999999999
Q ss_pred ceEEe-----CCCCHHHHHHHHHHHHH
Q 027234 75 CDYLT-----KPVRIEELKNIWQHVVR 96 (226)
Q Consensus 75 ~~yl~-----KP~~~~~L~~~l~~~~~ 96 (226)
++.+. |.-++..+...+...+.
T Consensus 211 dgVlVgSAI~~a~dP~~ma~af~~Av~ 237 (265)
T 1wv2_A 211 EAVLMNTAIAHAKDPVMMAEAMKHAIV 237 (265)
T ss_dssp SEEEESHHHHTSSSHHHHHHHHHHHHH
T ss_pred CEEEEChHHhCCCCHHHHHHHHHHHHH
Confidence 99884 44556666666655543
No 121
>1bl0_A Protein (multiple antibiotic resistance protein), DNA (5'- D(*CP*CP*GP*AP*TP*GP*CP*CP*AP*CP*GP*TP*TP*TP*TP*GP*CP*TP*AP *AP*AP*TP* CP*C)-3')...; transcriptional activator; HET: DNA; 2.30A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 PDB: 1xs9_A
Probab=94.78 E-value=0.0094 Score=42.26 Aligned_cols=49 Identities=12% Similarity=0.079 Sum_probs=37.0
Q ss_pred HHHHHHHHHHhCCCCCCchHHHHhhCCCCCCHHHHHHHhhhhhhhhhcccCCC-CCCCCC
Q 027234 161 HQQFVSAVKELGFDKAGPKKILELMNIPGLTRENVASHLQKHRLYLSRLSGVS-PQQGNS 219 (226)
Q Consensus 161 ~~~Fi~~~~~~g~~~~~p~~I~~~~~~~~lt~~~va~~l~~~r~~l~r~~~~~-~~~~~~ 219 (226)
+..++..+.. .|.+++.. .++++++|+++++|+++|+|+|+-. ++.+..
T Consensus 9 ~~~~i~~~~~---------~i~~~~~~-~~sl~~lA~~~~~S~~~l~r~fk~~~G~s~~~ 58 (129)
T 1bl0_A 9 DAITIHSILD---------WIEDNLES-PLSLEKVSERSGYSKWHLQRMFKKETGHSLGQ 58 (129)
T ss_dssp CHHHHHHHHH---------HHHTTTTS-CCCCHHHHHHSSSCHHHHHHHHHHHHSSCHHH
T ss_pred hHHHHHHHHH---------HHHHccCC-CCCHHHHHHHHCcCHHHHHHHHHHHHCcCHHH
Confidence 3455555555 58888887 4999999999999999999988753 554433
No 122
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=94.37 E-value=0.98 Score=33.08 Aligned_cols=95 Identities=11% Similarity=0.083 Sum_probs=63.7
Q ss_pred CcEEEE---ECCHHHHHHHHHhCCCCceEEEEccCCCC-CC-HHHHHHHHhcC--CCCcEEEEeccCCHHHHHHHHhCCc
Q 027234 2 GFSVTK---CNRAEIALDMLRTNKNGYDIVISDVHMPD-MD-GFKLLELVGLE--MDLPVIMMCAHGSKEVVMKGVTHDA 74 (226)
Q Consensus 2 g~~V~~---~~~~~eal~~l~~~~~~~DlVl~D~~mp~-~d-G~~l~~~l~~~--~~~pvI~ls~~~~~~~~~~a~~~ga 74 (226)
||+|.. ..+.++..+.+.+.. ||+|.+...+.. +. --++++.++.. .+++|+ +.+.........+...|+
T Consensus 46 G~eVi~lG~~~p~e~lv~aa~~~~--~diV~lS~~~~~~~~~~~~~i~~L~~~g~~~i~v~-vGG~~~~~~~~~l~~~G~ 122 (161)
T 2yxb_A 46 GFEVVYTGLRQTPEQVAMAAVQED--VDVIGVSILNGAHLHLMKRLMAKLRELGADDIPVV-LGGTIPIPDLEPLRSLGI 122 (161)
T ss_dssp TCEEECCCSBCCHHHHHHHHHHTT--CSEEEEEESSSCHHHHHHHHHHHHHHTTCTTSCEE-EEECCCHHHHHHHHHTTC
T ss_pred CCEEEECCCCCCHHHHHHHHHhcC--CCEEEEEeechhhHHHHHHHHHHHHhcCCCCCEEE-EeCCCchhcHHHHHHCCC
Confidence 788873 346788889988876 999999888764 22 23345566533 256654 555555555555678999
Q ss_pred ceEEeCCCCHHHHHHHHHHHHHHHh
Q 027234 75 CDYLTKPVRIEELKNIWQHVVRKRK 99 (226)
Q Consensus 75 ~~yl~KP~~~~~L~~~l~~~~~~~~ 99 (226)
++++..--+..+....+..++..+.
T Consensus 123 d~v~~~~~~~~~~~~~~~~~~~~~~ 147 (161)
T 2yxb_A 123 REIFLPGTSLGEIIEKVRKLAEEKR 147 (161)
T ss_dssp CEEECTTCCHHHHHHHHHHHHHHHH
T ss_pred cEEECCCCCHHHHHHHHHHHHHHhh
Confidence 9877665666777777777776543
No 123
>3q7r_A Transcriptional regulatory protein; CHXR, receiver domain, transcription factor, OMPR, chlamydia transcription; 1.60A {Chlamydia trachomatis} PDB: 3q7s_A* 3q7t_A
Probab=93.67 E-value=0.29 Score=32.92 Aligned_cols=64 Identities=16% Similarity=0.216 Sum_probs=50.0
Q ss_pred ceEEEEccCC-CCCCHHHHHHHHh---cCCCCcEEEEeccCCHHHHHHHHhCCcceEEeCCCCHHHHHHHHHHHHHH
Q 027234 25 YDIVISDVHM-PDMDGFKLLELVG---LEMDLPVIMMCAHGSKEVVMKGVTHDACDYLTKPVRIEELKNIWQHVVRK 97 (226)
Q Consensus 25 ~DlVl~D~~m-p~~dG~~l~~~l~---~~~~~pvI~ls~~~~~~~~~~a~~~ga~~yl~KP~~~~~L~~~l~~~~~~ 97 (226)
.|+|+|...+ |. .+. .....-+|++-..-+.+...+.+..||. ||..|+++..|..+|+..++.
T Consensus 51 AdlIfCEYlLLPe--------~ifS~k~~~~~dliVLfD~F~EEa~v~vLd~Ga~-yLlrPIT~kvldAvIraFLrq 118 (121)
T 3q7r_A 51 ADLVVCEYSLLPR--------EIRSPKSLEGSFVLVLLDFFDEETSVDLLDRGFW-YLIRPITPRILKSAISLFLSQ 118 (121)
T ss_dssp EEEEEEEGGGSCT--------TCCCCTTCCSCEEEEEESSCCHHHHHHHHHTTCE-EEESCCCHHHHHHHHHHHHHH
T ss_pred ceeEEEeeecChH--------HhcCCCCCCcccEEEEehhhchHHHHHHHhCCce-eEeccCcHHHHHHHHHHHHhc
Confidence 5888888754 32 121 1234557888888888999999999999 999999999999999988764
No 124
>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp}
Probab=93.49 E-value=0.46 Score=37.08 Aligned_cols=71 Identities=10% Similarity=0.189 Sum_probs=54.5
Q ss_pred EEECCHHHHHHHHHhCCCCceEEEEccC------CCCCCHHHHHHHHhcCCCCcEEEEeccCCHHHHHHHHhCCcceEEe
Q 027234 6 TKCNRAEIALDMLRTNKNGYDIVISDVH------MPDMDGFKLLELVGLEMDLPVIMMCAHGSKEVVMKGVTHDACDYLT 79 (226)
Q Consensus 6 ~~~~~~~eal~~l~~~~~~~DlVl~D~~------mp~~dG~~l~~~l~~~~~~pvI~ls~~~~~~~~~~a~~~ga~~yl~ 79 (226)
..+.+.+++....+. ++|.|.+... .+...++++++.++.. ++|+|.-++-.+.+.+.+++..||++.+.
T Consensus 134 ~~v~t~eea~~a~~~---Gad~Ig~~~~g~t~~~~~~~~~~~li~~l~~~-~ipvIA~GGI~t~~d~~~~~~~GadgV~V 209 (229)
T 3q58_A 134 ADCSTVNEGISCHQK---GIEFIGTTLSGYTGPITPVEPDLAMVTQLSHA-GCRVIAEGRYNTPALAANAIEHGAWAVTV 209 (229)
T ss_dssp EECSSHHHHHHHHHT---TCSEEECTTTTSSSSCCCSSCCHHHHHHHHTT-TCCEEEESSCCSHHHHHHHHHTTCSEEEE
T ss_pred EecCCHHHHHHHHhC---CCCEEEecCccCCCCCcCCCCCHHHHHHHHHc-CCCEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 356788888777653 3899865332 2334568889988765 89999998888999999999999999985
Q ss_pred C
Q 027234 80 K 80 (226)
Q Consensus 80 K 80 (226)
=
T Consensus 210 G 210 (229)
T 3q58_A 210 G 210 (229)
T ss_dssp C
T ss_pred c
Confidence 3
No 125
>3gbg_A TCP pilus virulence regulatory protein; cupin, helix-turn-helix, ARAC family, activator, DNA-binding transcription, transcription regulation; HET: PAM; 1.90A {Vibrio cholerae}
Probab=93.39 E-value=0.02 Score=45.80 Aligned_cols=40 Identities=8% Similarity=0.081 Sum_probs=34.3
Q ss_pred HHHHhhCCCCCCHHHHHHHhhhhhhhhhcccCCCCCCCCCC
Q 027234 180 KILELMNIPGLTRENVASHLQKHRLYLSRLSGVSPQQGNSF 220 (226)
Q Consensus 180 ~I~~~~~~~~lt~~~va~~l~~~r~~l~r~~~~~~~~~~~~ 220 (226)
.|.+++.. .+|++++|+++++|+++|.|+||..++.+..|
T Consensus 177 ~i~~~~~~-~~sl~~lA~~~~~S~~~l~r~fk~~G~t~~~~ 216 (276)
T 3gbg_A 177 LVKSDITR-NWRWADICGELRTNRMILKKELESRGVKFREL 216 (276)
T ss_dssp HHHHTTTS-CCCHHHHHHHHTCCHHHHHHHHHTTTCCHHHH
T ss_pred HHHHhhcC-CCCHHHHHHHHCcCHHHHHHHHHHcCCCHHHH
Confidence 47778877 89999999999999999999998777666544
No 126
>2htm_A Thiazole biosynthesis protein THIG; thiamin biosynthesis, THIG, thermus thermophilus HB8, structural genomics, NPPSFA; 2.30A {Thermus thermophilus}
Probab=92.65 E-value=0.41 Score=38.14 Aligned_cols=91 Identities=16% Similarity=0.115 Sum_probs=62.3
Q ss_pred CcEEE-EE-CCHHHHHHHHHhCCCCceEEEEccCCCCCCH-----HHHHHHHhc-CCC-CcEEEEeccCCHHHHHHHHhC
Q 027234 2 GFSVT-KC-NRAEIALDMLRTNKNGYDIVISDVHMPDMDG-----FKLLELVGL-EMD-LPVIMMCAHGSKEVVMKGVTH 72 (226)
Q Consensus 2 g~~V~-~~-~~~~eal~~l~~~~~~~DlVl~D~~mp~~dG-----~~l~~~l~~-~~~-~pvI~ls~~~~~~~~~~a~~~ 72 (226)
||.|. .| .|...|-.+.. .. +++| +.+..|-..| .++++.++. ..+ +|||+=.+-...+.+..++++
T Consensus 124 Gf~Vlpy~~~D~~~ak~l~~-~G--~~aV-mPlg~pIGsG~Gi~~~~~L~~i~~~~~~~vPVI~~GGI~tpsDAa~AmeL 199 (268)
T 2htm_A 124 DFLVLPYMGPDLVLAKRLAA-LG--TATV-MPLAAPIGSGWGVRTRALLELFAREKASLPPVVVDAGLGLPSHAAEVMEL 199 (268)
T ss_dssp TCEECCEECSCHHHHHHHHH-HT--CSCB-EEBSSSTTTCCCSTTHHHHHHHHHTTTTSSCBEEESCCCSHHHHHHHHHT
T ss_pred CCEEeeccCCCHHHHHHHHh-cC--CCEE-EecCccCcCCcccCCHHHHHHHHHhcCCCCeEEEeCCCCCHHHHHHHHHc
Confidence 78876 34 56655554444 33 7776 5555443222 556787775 677 999998888899999999999
Q ss_pred CcceEE-----eCCCCHHHHHHHHHHHHH
Q 027234 73 DACDYL-----TKPVRIEELKNIWQHVVR 96 (226)
Q Consensus 73 ga~~yl-----~KP~~~~~L~~~l~~~~~ 96 (226)
|+++.+ .|.-++..+...+...+.
T Consensus 200 GAdgVlVgSAI~~a~dP~~ma~af~~Av~ 228 (268)
T 2htm_A 200 GLDAVLVNTAIAEAQDPPAMAEAFRLAVE 228 (268)
T ss_dssp TCCEEEESHHHHTSSSHHHHHHHHHHHHH
T ss_pred CCCEEEEChHHhCCCCHHHHHHHHHHHHH
Confidence 999988 455556666666665543
No 127
>1u8b_A ADA polyprotein; protein-DNA complex, methylation, zinc, helix-turn-helix, metal binding protein/DNA complex; 2.10A {Escherichia coli} PDB: 1zgw_A* 1wpk_A* 1adn_A 1eyf_A
Probab=92.50 E-value=0.046 Score=38.78 Aligned_cols=34 Identities=18% Similarity=0.172 Sum_probs=27.1
Q ss_pred CCCCCHHHHHHHhhhhhhhhhcccC-CCCCCCCCC
Q 027234 187 IPGLTRENVASHLQKHRLYLSRLSG-VSPQQGNSF 220 (226)
Q Consensus 187 ~~~lt~~~va~~l~~~r~~l~r~~~-~~~~~~~~~ 220 (226)
.+++++++||.++|+|.+||+|+|+ ..++.+..|
T Consensus 91 ~~~~sl~~lA~~~g~S~~~f~r~Fk~~~G~tp~~y 125 (133)
T 1u8b_A 91 ETPVTLEALADQVAMSPFHLHRLFKATTGMTPKAW 125 (133)
T ss_dssp SSCCCHHHHHHHHTSCHHHHHHHHHHHTSSCHHHH
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHHCcCHHHH
Confidence 6789999999999999999999874 344444433
No 128
>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0
Probab=92.09 E-value=0.85 Score=35.61 Aligned_cols=70 Identities=17% Similarity=0.215 Sum_probs=53.2
Q ss_pred EEECCHHHHHHHHHhCCCCceEEEEccC------CCCCCHHHHHHHHhcCCCCcEEEEeccCCHHHHHHHHhCCcceEEe
Q 027234 6 TKCNRAEIALDMLRTNKNGYDIVISDVH------MPDMDGFKLLELVGLEMDLPVIMMCAHGSKEVVMKGVTHDACDYLT 79 (226)
Q Consensus 6 ~~~~~~~eal~~l~~~~~~~DlVl~D~~------mp~~dG~~l~~~l~~~~~~pvI~ls~~~~~~~~~~a~~~ga~~yl~ 79 (226)
..+.+.+++....+. ++|.|.+... .+...++++++.++.. ++|+|.-++-.+.+.+.+++..||++.+.
T Consensus 134 ~~v~t~eea~~a~~~---Gad~Ig~~~~g~t~~~~~~~~~~~~i~~l~~~-~ipvIA~GGI~t~~d~~~~~~~GadgV~V 209 (232)
T 3igs_A 134 ADCSSVDDGLACQRL---GADIIGTTMSGYTTPDTPEEPDLPLVKALHDA-GCRVIAEGRYNSPALAAEAIRYGAWAVTV 209 (232)
T ss_dssp EECCSHHHHHHHHHT---TCSEEECTTTTSSSSSCCSSCCHHHHHHHHHT-TCCEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred EeCCCHHHHHHHHhC---CCCEEEEcCccCCCCCCCCCCCHHHHHHHHhc-CCcEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 356788888776653 3899864322 1234468889888765 89999888888899999999999999985
No 129
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=92.05 E-value=0.068 Score=30.25 Aligned_cols=34 Identities=3% Similarity=0.002 Sum_probs=25.1
Q ss_pred HHHhhCCCCCCHHHHHHHhhhhhhhhhcccCCCCC
Q 027234 181 ILELMNIPGLTRENVASHLQKHRLYLSRLSGVSPQ 215 (226)
Q Consensus 181 I~~~~~~~~lt~~~va~~l~~~r~~l~r~~~~~~~ 215 (226)
|+..+. .+++..+||..|++|+..+++..+....
T Consensus 14 i~~~~~-~g~s~~~IA~~lgis~~Tv~~~~~~~~~ 47 (51)
T 1tc3_C 14 LDVMKL-LNVSLHEMSRKISRSRHCIRVYLKDPVS 47 (51)
T ss_dssp HHHHHH-TTCCHHHHHHHHTCCHHHHHHHHHCSTT
T ss_pred HHHHHH-cCCCHHHHHHHHCcCHHHHHHHHhhHHh
Confidence 444443 4899999999999999999885444333
No 130
>2w7n_A TRFB transcriptional repressor protein; INCP, plasmid, repressor, DNA-binding, transcription/DNA; HET: BRU; 1.85A {Escherichia coli}
Probab=90.23 E-value=0.13 Score=34.88 Aligned_cols=46 Identities=22% Similarity=0.233 Sum_probs=30.0
Q ss_pred HHHHHHHHHhCCCCCCchHHHHhhCCCCCCHHHHHHHhhhhhhhhhc
Q 027234 162 QQFVSAVKELGFDKAGPKKILELMNIPGLTRENVASHLQKHRLYLSR 208 (226)
Q Consensus 162 ~~Fi~~~~~~g~~~~~p~~I~~~~~~~~lt~~~va~~l~~~r~~l~r 208 (226)
.+|-.++..+.++... -.|-..+=++|+|..+||..||+||....|
T Consensus 8 ~eFe~~~~~l~~~~~~-~~~A~lyYv~g~tQ~eIA~~lGiSR~~Vsr 53 (101)
T 2w7n_A 8 SQFQEAIQGLEVGQQT-IEIARGVLVDGKPQATFATSLGLTRGAVSQ 53 (101)
T ss_dssp HHHHHHHTTCCCCHHH-HHHHHHHHTTCCCHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHccCChHHHH-HHHHHHHHHcCCCHHHHHHHHCCCHHHHHH
Confidence 4555555444332222 234445556799999999999999997655
No 131
>2zcm_A Biofilm operon icaabcd HTH-type negative transcri regulator ICAR; helix-turn-helix, TETR family, repressor; 1.33A {Staphylococcus epidermidis} PDB: 2zcn_A
Probab=89.83 E-value=0.3 Score=36.00 Aligned_cols=44 Identities=7% Similarity=0.137 Sum_probs=35.7
Q ss_pred hhHHHHHHHHHHhCCCCCCchHHHHhhCCCCCCHHHHHHHhhhhhhhhhcccCC
Q 027234 159 ELHQQFVSAVKELGFDKAGPKKILELMNIPGLTRENVASHLQKHRLYLSRLSGV 212 (226)
Q Consensus 159 ~l~~~Fi~~~~~~g~~~~~p~~I~~~~~~~~lt~~~va~~l~~~r~~l~r~~~~ 212 (226)
..+.+++.++.+ +...-.-.+.|+++||.+.|+||..+|+-|+.
T Consensus 7 ~~~~~Il~aA~~----------lf~~~G~~~~t~~~IA~~agvs~~tlY~~F~s 50 (192)
T 2zcm_A 7 HMKDKIIDNAIT----------LFSEKGYDGTTLDDISKSVNIKKASLYYHYDN 50 (192)
T ss_dssp -CHHHHHHHHHH----------HHHHHCTTTCCHHHHHHHTTCCHHHHHHHTCC
T ss_pred hhHHHHHHHHHH----------HHHHcCcccCCHHHHHHHhCCChHHHHHHCCC
Confidence 456788888888 44445667899999999999999999998874
No 132
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=89.55 E-value=0.16 Score=28.93 Aligned_cols=32 Identities=25% Similarity=0.171 Sum_probs=24.8
Q ss_pred HHHhhCCCCCCHHHHHHHhhhhhhhhhcccCCC
Q 027234 181 ILELMNIPGLTRENVASHLQKHRLYLSRLSGVS 213 (226)
Q Consensus 181 I~~~~~~~~lt~~~va~~l~~~r~~l~r~~~~~ 213 (226)
|++.+.. +.+..+||..+++|++.+||..+..
T Consensus 14 i~~l~~~-g~s~~~ia~~lgvs~~Tv~r~l~~~ 45 (52)
T 1jko_C 14 ISRLLEK-GHPRQQLAIIFGIGVSTLYRYFPAS 45 (52)
T ss_dssp HHHHHHT-TCCHHHHHHTTSCCHHHHHHHSCTT
T ss_pred HHHHHHc-CCCHHHHHHHHCCCHHHHHHHHHHc
Confidence 4444433 7999999999999999999865543
No 133
>3knw_A Putative transcriptional regulator (TETR/ACRR FAM; TETR-like protein, MCSG, PSI, structural genomics, protein S initiative; 2.45A {Acinetobacter SP}
Probab=88.05 E-value=0.47 Score=35.30 Aligned_cols=44 Identities=5% Similarity=-0.040 Sum_probs=35.8
Q ss_pred hhHHHHHHHHHHhCCCCCCchHHHHhhCCCCCCHHHHHHHhhhhhhhhhcccCC
Q 027234 159 ELHQQFVSAVKELGFDKAGPKKILELMNIPGLTRENVASHLQKHRLYLSRLSGV 212 (226)
Q Consensus 159 ~l~~~Fi~~~~~~g~~~~~p~~I~~~~~~~~lt~~~va~~l~~~r~~l~r~~~~ 212 (226)
.-.++++.++.+ ++......++|+++||.+.|+||..+|+-|+.
T Consensus 14 ~~r~~Il~aa~~----------l~~~~G~~~~ti~~IA~~agvs~~t~Y~~F~s 57 (212)
T 3knw_A 14 AKRQHILDSGFH----------LVLRKGFVGVGLQEILKTSGVPKGSFYHYFES 57 (212)
T ss_dssp HHHHHHHHHHHH----------HHHHHCSTTCCHHHHHHHHTCCHHHHHHHCSS
T ss_pred hhHHHHHHHHHH----------HHHHcCCccCCHHHHHHHhCCChHHHHHHCCC
Confidence 345678888888 44445677999999999999999999998874
No 134
>3qkx_A Uncharacterized HTH-type transcriptional regulato; structural genomics, joint center for structural genomics; HET: MSE; 2.35A {Haemophilus influenzae}
Probab=87.96 E-value=0.49 Score=34.38 Aligned_cols=43 Identities=14% Similarity=0.050 Sum_probs=34.3
Q ss_pred hHHHHHHHHHHhCCCCCCchHHHHhhCCCCCCHHHHHHHhhhhhhhhhcccCC
Q 027234 160 LHQQFVSAVKELGFDKAGPKKILELMNIPGLTRENVASHLQKHRLYLSRLSGV 212 (226)
Q Consensus 160 l~~~Fi~~~~~~g~~~~~p~~I~~~~~~~~lt~~~va~~l~~~r~~l~r~~~~ 212 (226)
..++++.++.+ +...-...++|+++||.+.|+||..+|+-|+.
T Consensus 9 ~r~~Il~aa~~----------l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~F~s 51 (188)
T 3qkx_A 9 LAEQIFSATDR----------LMAREGLNQLSMLKLAKEANVAAGTIYLYFKN 51 (188)
T ss_dssp HHHHHHHHHHH----------HHHHSCSTTCCHHHHHHHHTCCHHHHHHHSSS
T ss_pred HHHHHHHHHHH----------HHHhcCcccCCHHHHHHHhCCCcchHHHHcCC
Confidence 34677777777 44445666899999999999999999998864
No 135
>3ppb_A Putative TETR family transcription regulator; DNA-binding, helix-turn-helix motif, HTH motif, DNA/RNA-BIND helical bundle fold; HET: MSE PG4; 2.10A {Shewanella loihica}
Probab=87.90 E-value=0.51 Score=34.45 Aligned_cols=42 Identities=10% Similarity=0.023 Sum_probs=34.0
Q ss_pred HHHHHHHHHHhCCCCCCchHHHHhhCCCCCCHHHHHHHhhhhhhhhhcccCC
Q 027234 161 HQQFVSAVKELGFDKAGPKKILELMNIPGLTRENVASHLQKHRLYLSRLSGV 212 (226)
Q Consensus 161 ~~~Fi~~~~~~g~~~~~p~~I~~~~~~~~lt~~~va~~l~~~r~~l~r~~~~ 212 (226)
.++++.++.. ++..-...++|+++||.+.++||..+|+-|+.
T Consensus 11 r~~Il~aa~~----------l~~~~G~~~~tv~~Ia~~agvs~~t~Y~~F~s 52 (195)
T 3ppb_A 11 KQAILETALQ----------LFVSQGFHGTSTATIAREAGVATGTLFHHFPS 52 (195)
T ss_dssp HHHHHHHHHH----------HHHHTCSTTSCHHHHHHHHTCCHHHHHHHCSS
T ss_pred HHHHHHHHHH----------HHHhcCcccCCHHHHHHHhCCChhHHHHHcCC
Confidence 4577777777 44445667899999999999999999998874
No 136
>3rd3_A Probable transcriptional regulator; 2.40A {Pseudomonas aeruginosa}
Probab=87.81 E-value=0.61 Score=34.13 Aligned_cols=44 Identities=7% Similarity=0.084 Sum_probs=35.5
Q ss_pred hhHHHHHHHHHHhCCCCCCchHHHHhhCCCCCCHHHHHHHhhhhhhhhhcccCC
Q 027234 159 ELHQQFVSAVKELGFDKAGPKKILELMNIPGLTRENVASHLQKHRLYLSRLSGV 212 (226)
Q Consensus 159 ~l~~~Fi~~~~~~g~~~~~p~~I~~~~~~~~lt~~~va~~l~~~r~~l~r~~~~ 212 (226)
...++++.++.+ +...-.-.+.|+++||.+.++||..+|+-|+.
T Consensus 10 ~~r~~Il~aa~~----------lf~~~G~~~~t~~~IA~~agvs~~tlY~~F~s 53 (197)
T 3rd3_A 10 DTRQHLLDTGYR----------IMAVKGFSGVGLNEILQSAGVPKGSFYHYFKS 53 (197)
T ss_dssp CHHHHHHHHHHH----------HHHHHCSTTCCHHHHHHHHTCCHHHHTTTCSC
T ss_pred hHHHHHHHHHHH----------HHHHCCcccCCHHHHHHHhCCChhhHHHHcCC
Confidence 345678888888 33444667899999999999999999998874
No 137
>3kkc_A TETR family transcriptional regulator; APC20805, structural genomics, PSI-2, protein structure initiative; 2.50A {Streptococcus agalactiae 2603V}
Probab=87.80 E-value=0.43 Score=34.49 Aligned_cols=43 Identities=12% Similarity=0.026 Sum_probs=33.3
Q ss_pred hHHHHHHHHHHhCCCCCCchHHHHhhCCCCCCHHHHHHHhhhhhhhhhcccCC
Q 027234 160 LHQQFVSAVKELGFDKAGPKKILELMNIPGLTRENVASHLQKHRLYLSRLSGV 212 (226)
Q Consensus 160 l~~~Fi~~~~~~g~~~~~p~~I~~~~~~~~lt~~~va~~l~~~r~~l~r~~~~ 212 (226)
-.++++.++.+ ++..-.-.+.|+++||.+.|+||..+|+-|+.
T Consensus 13 tr~~Il~aa~~----------l~~~~G~~~~tv~~Ia~~agvs~~t~Y~~F~s 55 (177)
T 3kkc_A 13 TKVAIYNAFIS----------LLQENDYSKITVQDVIGLANVGRSTFYSHYES 55 (177)
T ss_dssp HHHHHHHHHHH----------HTTTSCTTTCCHHHHHHHHCCCHHHHTTTCSS
T ss_pred HHHHHHHHHHH----------HHHhCChhHhhHHHHHHHhCCcHhhHHHHcCC
Confidence 34577777777 33334556789999999999999999998875
No 138
>3o63_A Probable thiamine-phosphate pyrophosphorylase; thiamin biosynthesis, TIM barrel, transferase; 2.35A {Mycobacterium tuberculosis}
Probab=87.50 E-value=6.7 Score=30.71 Aligned_cols=83 Identities=8% Similarity=0.018 Sum_probs=57.3
Q ss_pred EECCHHHHHHHHHhCCCCceEEEEccCCCC-------CCHHHHHHHHhcC--CCCcEEEEeccCCHHHHHHHHhCCcceE
Q 027234 7 KCNRAEIALDMLRTNKNGYDIVISDVHMPD-------MDGFKLLELVGLE--MDLPVIMMCAHGSKEVVMKGVTHDACDY 77 (226)
Q Consensus 7 ~~~~~~eal~~l~~~~~~~DlVl~D~~mp~-------~dG~~l~~~l~~~--~~~pvI~ls~~~~~~~~~~a~~~ga~~y 77 (226)
.|.+.+|+...... ++|.|.+.-..|. .-|++.++.+... .++|++.+.+- +.+.+...+..||+++
T Consensus 141 S~ht~~Ea~~A~~~---GaDyI~vgpvf~T~tK~~~~~~gl~~l~~~~~~~~~~iPvvAiGGI-~~~ni~~~~~aGa~gv 216 (243)
T 3o63_A 141 STHDPDQVAAAAAG---DADYFCVGPCWPTPTKPGRAAPGLGLVRVAAELGGDDKPWFAIGGI-NAQRLPAVLDAGARRI 216 (243)
T ss_dssp EECSHHHHHHHHHS---SCSEEEECCSSCCCC-----CCCHHHHHHHHTC---CCCEEEESSC-CTTTHHHHHHTTCCCE
T ss_pred eCCCHHHHHHHhhC---CCCEEEEcCccCCCCCCCcchhhHHHHHHHHHhccCCCCEEEecCC-CHHHHHHHHHcCCCEE
Confidence 57888888776653 3899998654433 2378888888754 48999998876 6677888899999998
Q ss_pred Ee-----CCCCHHHHHHHHHH
Q 027234 78 LT-----KPVRIEELKNIWQH 93 (226)
Q Consensus 78 l~-----KP~~~~~L~~~l~~ 93 (226)
.. +.-++......+..
T Consensus 217 av~sai~~a~dp~~a~~~l~~ 237 (243)
T 3o63_A 217 VVVRAITSADDPRAAAEQLRS 237 (243)
T ss_dssp EESHHHHTCSSHHHHHHHHHH
T ss_pred EEeHHHhCCCCHHHHHHHHHH
Confidence 74 44455444444333
No 139
>1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A
Probab=87.47 E-value=1.9 Score=33.61 Aligned_cols=50 Identities=10% Similarity=0.169 Sum_probs=36.6
Q ss_pred HHHHHHHhcCCCCcEEEEeccCC------HHHHHHHHhCCcceEEeCCCCHHHHHH
Q 027234 40 FKLLELVGLEMDLPVIMMCAHGS------KEVVMKGVTHDACDYLTKPVRIEELKN 89 (226)
Q Consensus 40 ~~l~~~l~~~~~~pvI~ls~~~~------~~~~~~a~~~ga~~yl~KP~~~~~L~~ 89 (226)
+++++.+++..++||++++.... .+....++..||++.+.-....++...
T Consensus 69 ~~~i~~i~~~~~~pv~~~~~~~~~~~~~~~~~~~~~~~~Gad~v~~~~~~~~~~~~ 124 (248)
T 1geq_A 69 FWIVKEFRRHSSTPIVLMTYYNPIYRAGVRNFLAEAKASGVDGILVVDLPVFHAKE 124 (248)
T ss_dssp HHHHHHHHTTCCCCEEEEECHHHHHHHCHHHHHHHHHHHTCCEEEETTCCGGGHHH
T ss_pred HHHHHHHHhhCCCCEEEEeccchhhhcCHHHHHHHHHHCCCCEEEECCCChhhHHH
Confidence 67778887666789988874333 467788999999999987666555443
No 140
>1xi3_A Thiamine phosphate pyrophosphorylase; structural genomics, southeast collaboratory for structural genomics, hyperthermophIle; 1.70A {Pyrococcus furiosus} SCOP: c.1.3.1
Probab=87.30 E-value=5.7 Score=29.84 Aligned_cols=68 Identities=15% Similarity=0.144 Sum_probs=48.3
Q ss_pred EECCHHHHHHHHHhCCCCceEEEEccCCCC-------CCHHHHHHHHhcCCCCcEEEEeccCCHHHHHHHHhCCcceEE
Q 027234 7 KCNRAEIALDMLRTNKNGYDIVISDVHMPD-------MDGFKLLELVGLEMDLPVIMMCAHGSKEVVMKGVTHDACDYL 78 (226)
Q Consensus 7 ~~~~~~eal~~l~~~~~~~DlVl~D~~mp~-------~dG~~l~~~l~~~~~~pvI~ls~~~~~~~~~~a~~~ga~~yl 78 (226)
.+.+..++...... . +|.|+++-..|. ..+++.++.++...++|+++..+-. .+.+.+++..|++++.
T Consensus 114 ~~~t~~e~~~~~~~-g--~d~i~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~pvia~GGI~-~~nv~~~~~~Ga~gv~ 188 (215)
T 1xi3_A 114 SVYSLEEALEAEKK-G--ADYLGAGSVFPTKTKEDARVIGLEGLRKIVESVKIPVVAIGGIN-KDNAREVLKTGVDGIA 188 (215)
T ss_dssp EESSHHHHHHHHHH-T--CSEEEEECSSCC----CCCCCHHHHHHHHHHHCSSCEEEESSCC-TTTHHHHHTTTCSEEE
T ss_pred ecCCHHHHHHHHhc-C--CCEEEEcCCccCCCCCCCCCcCHHHHHHHHHhCCCCEEEECCcC-HHHHHHHHHcCCCEEE
Confidence 35677777655432 3 899998754443 3578888888655578988766655 7777778889999885
No 141
>3qbm_A TETR transcriptional regulator; DNA/RNA-binding three-helical bundle, structural genomics, J center for structural genomics, JCSG; HET: MSE PGE; 1.80A {Chloroflexus aurantiacus}
Probab=87.18 E-value=0.67 Score=33.96 Aligned_cols=43 Identities=7% Similarity=0.085 Sum_probs=34.5
Q ss_pred hHHHHHHHHHHhCCCCCCchHHHHhhCCCCCCHHHHHHHhhhhhhhhhcccCC
Q 027234 160 LHQQFVSAVKELGFDKAGPKKILELMNIPGLTRENVASHLQKHRLYLSRLSGV 212 (226)
Q Consensus 160 l~~~Fi~~~~~~g~~~~~p~~I~~~~~~~~lt~~~va~~l~~~r~~l~r~~~~ 212 (226)
-.++++.++.+ ++..-.-.++|+++||.+.|+|+..+|+-|+.
T Consensus 8 ~r~~Il~aa~~----------l~~~~G~~~~t~~~IA~~agvs~~t~Y~~F~s 50 (199)
T 3qbm_A 8 TRERVVAQAAA----------LFNVSGYAGTAISDIMAATGLEKGGIYRHFES 50 (199)
T ss_dssp HHHHHHHHHHH----------HHHHHCSTTCCHHHHHHHHTCCHHHHHTTCSS
T ss_pred HHHHHHHHHHH----------HHHHhCcCcCCHHHHHHHhCCCccHHHHhCCC
Confidence 34677778777 44445667899999999999999999998874
No 142
>2iu5_A DHAS, YCEG, HTH-type dhaklm operon transcriptional activator; synthase, TETR family; 1.6A {Lactococcus lactis subsp} SCOP: a.4.1.9 a.121.1.1
Probab=87.12 E-value=0.56 Score=34.63 Aligned_cols=43 Identities=7% Similarity=0.083 Sum_probs=33.5
Q ss_pred hHHHHHHHHHHhCCCCCCchHHHHhhCCCCCCHHHHHHHhhhhhhhhhcccCC
Q 027234 160 LHQQFVSAVKELGFDKAGPKKILELMNIPGLTRENVASHLQKHRLYLSRLSGV 212 (226)
Q Consensus 160 l~~~Fi~~~~~~g~~~~~p~~I~~~~~~~~lt~~~va~~l~~~r~~l~r~~~~ 212 (226)
-.++++.++.+ +...-.-.+.|+++||.+.|+||..||+-|+.
T Consensus 14 ~r~~Il~aa~~----------lf~~~G~~~~tv~~Ia~~agvs~~t~Y~~F~s 56 (195)
T 2iu5_A 14 TQKIIAKAFKD----------LMQSNAYHQISVSDIMQTAKIRRQTFYNYFQN 56 (195)
T ss_dssp HHHHHHHHHHH----------HHHHSCGGGCCHHHHHHHHTSCGGGGGGTCSS
T ss_pred HHHHHHHHHHH----------HHHhCCCCeeCHHHHHHHhCCCHHHHHHHcCC
Confidence 35677777777 33334556799999999999999999998864
No 143
>3b81_A Transcriptional regulator, ACRR family; NP_350189.1, predicted DNA-binding transcriptional regulator TETR/ACRR family; 2.10A {Clostridium acetobutylicum atcc 824}
Probab=86.81 E-value=0.72 Score=33.97 Aligned_cols=44 Identities=9% Similarity=0.012 Sum_probs=35.2
Q ss_pred hhHHHHHHHHHHhCCCCCCchHHHHhhCCCCCCHHHHHHHhhhhhhhhhcccCC
Q 027234 159 ELHQQFVSAVKELGFDKAGPKKILELMNIPGLTRENVASHLQKHRLYLSRLSGV 212 (226)
Q Consensus 159 ~l~~~Fi~~~~~~g~~~~~p~~I~~~~~~~~lt~~~va~~l~~~r~~l~r~~~~ 212 (226)
.-.++++.++.+ ++..-.-.+.|+++||.+.|+|+..+|+-|+.
T Consensus 11 ~~r~~Il~aA~~----------lf~~~G~~~~s~~~Ia~~agvs~~t~Y~~F~s 54 (203)
T 3b81_A 11 NKRTELANKIWD----------IFIANGYENTTLAFIINKLGISKGALYHYFSS 54 (203)
T ss_dssp HHHHHHHHHHHH----------HHHHHCSTTCCHHHHHHHHTCCHHHHHTTCSS
T ss_pred HHHHHHHHHHHH----------HHHHcCcccCcHHHHHHHhCCCchhHHHHcCC
Confidence 345678888887 34445666899999999999999999998874
No 144
>2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus}
Probab=86.74 E-value=3 Score=33.02 Aligned_cols=56 Identities=14% Similarity=0.207 Sum_probs=39.1
Q ss_pred HHHHHHHHhcCC-CCcEEEEeccCC------HHHHHHHHhCCcceEEeCCCCHHHHHHHHHHH
Q 027234 39 GFKLLELVGLEM-DLPVIMMCAHGS------KEVVMKGVTHDACDYLTKPVRIEELKNIWQHV 94 (226)
Q Consensus 39 G~~l~~~l~~~~-~~pvI~ls~~~~------~~~~~~a~~~ga~~yl~KP~~~~~L~~~l~~~ 94 (226)
.+++++.++... ++|+++++-... ......+...|+++++.-.+..+++...+..+
T Consensus 81 ~~~~v~~ir~~~~~~Pi~~m~y~n~v~~~g~~~f~~~~~~aG~dgvii~dl~~ee~~~~~~~~ 143 (262)
T 2ekc_A 81 VLELSETLRKEFPDIPFLLMTYYNPIFRIGLEKFCRLSREKGIDGFIVPDLPPEEAEELKAVM 143 (262)
T ss_dssp HHHHHHHHHHHCTTSCEEEECCHHHHHHHCHHHHHHHHHHTTCCEEECTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCCCCEEEEecCcHHHHhhHHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHH
Confidence 345677777554 899999753321 34567788999999999888887765555443
No 145
>3vp5_A Transcriptional regulator; heme, sensor protein, TETR superf transcription; HET: HEM; 1.90A {Lactococcus lactis} PDB: 3vox_A 3vok_A*
Probab=86.70 E-value=0.64 Score=34.33 Aligned_cols=43 Identities=7% Similarity=-0.050 Sum_probs=34.4
Q ss_pred hHHHHHHHHHHhCCCCCCchHHHHhhCCCCCCHHHHHHHhhhhhhhhhcccCC
Q 027234 160 LHQQFVSAVKELGFDKAGPKKILELMNIPGLTRENVASHLQKHRLYLSRLSGV 212 (226)
Q Consensus 160 l~~~Fi~~~~~~g~~~~~p~~I~~~~~~~~lt~~~va~~l~~~r~~l~r~~~~ 212 (226)
-.++++.++.+ ++..-.-.++|+++||.+.|+||..+|+-|+.
T Consensus 13 tr~~Il~aa~~----------l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~F~~ 55 (189)
T 3vp5_A 13 KRNRVYDACLN----------EFQTHSFHEAKIMHIVKALDIPRGSFYQYFED 55 (189)
T ss_dssp HHHHHHHHHHH----------HHHHSCTTTCCHHHHHHHHTCCHHHHHHHCSS
T ss_pred HHHHHHHHHHH----------HHHHCCcccccHHHHHHHhCCChHHHHHHCCC
Confidence 34677777777 44455667899999999999999999998864
No 146
>3lwj_A Putative TETR-family transcriptional regulator; structural G joint center for structural genomics, JCSG, protein structu initiative; 2.07A {Syntrophomonas wolfei subsp}
Probab=86.61 E-value=0.61 Score=34.39 Aligned_cols=44 Identities=5% Similarity=-0.082 Sum_probs=35.0
Q ss_pred hhHHHHHHHHHHhCCCCCCchHHHHhhCCCCCCHHHHHHHhhhhhhhhhcccCC
Q 027234 159 ELHQQFVSAVKELGFDKAGPKKILELMNIPGLTRENVASHLQKHRLYLSRLSGV 212 (226)
Q Consensus 159 ~l~~~Fi~~~~~~g~~~~~p~~I~~~~~~~~lt~~~va~~l~~~r~~l~r~~~~ 212 (226)
.-.++++.++.+ ++..-.-.++|+++||.+.|+||..+|+-|+.
T Consensus 12 ~~r~~Il~aa~~----------l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~s 55 (202)
T 3lwj_A 12 ERRQKILTCSLD----------LFIEKGYYNTSIRDIIALSEVGTGTFYNYFVD 55 (202)
T ss_dssp HHHHHHHHHHHH----------HHHHHCTTTCCHHHHHHHHCSCHHHHHHHCSS
T ss_pred HHHHHHHHHHHH----------HHHHcCcccCCHHHHHHHhCCCchhHHHHcCC
Confidence 345677778777 44445667899999999999999999998874
No 147
>1yad_A Regulatory protein TENI; TIM barrel, transcription; 2.10A {Bacillus subtilis} PDB: 3qh2_A*
Probab=86.59 E-value=2.9 Score=31.94 Aligned_cols=69 Identities=16% Similarity=0.143 Sum_probs=49.1
Q ss_pred EECCHHHHHHHHHhCCCCceEEEEccCCCC-------CCHHHHHHHHhcCCCCcEEEEeccCCHHHHHHHHhCCcceEEe
Q 027234 7 KCNRAEIALDMLRTNKNGYDIVISDVHMPD-------MDGFKLLELVGLEMDLPVIMMCAHGSKEVVMKGVTHDACDYLT 79 (226)
Q Consensus 7 ~~~~~~eal~~l~~~~~~~DlVl~D~~mp~-------~dG~~l~~~l~~~~~~pvI~ls~~~~~~~~~~a~~~ga~~yl~ 79 (226)
.+.+.+++...... +.|.|+++-..+. ..|++.++.++...++|+++..+- +.+.+.+++..|++++..
T Consensus 116 sv~t~~~~~~a~~~---gaD~i~~~~~f~~~~~~g~~~~~~~~l~~~~~~~~~pvia~GGI-~~~nv~~~~~~Ga~gv~v 191 (221)
T 1yad_A 116 SVHSLEEAVQAEKE---DADYVLFGHVFETDCKKGLEGRGVSLLSDIKQRISIPVIAIGGM-TPDRLRDVKQAGADGIAV 191 (221)
T ss_dssp EECSHHHHHHHHHT---TCSEEEEECCC----------CHHHHHHHHHHHCCSCEEEESSC-CGGGHHHHHHTTCSEEEE
T ss_pred EcCCHHHHHHHHhC---CCCEEEECCccccCCCCCCCCCCHHHHHHHHHhCCCCEEEECCC-CHHHHHHHHHcCCCEEEE
Confidence 46678887766553 3899998764332 236778888765457898877766 788888999999998764
No 148
>3him_A Probable transcriptional regulator; TETR, bacterial, RHA1, PSI-2, MCSG, structural midwest center for structural genomics; 2.20A {Rhodococcus jostii}
Probab=86.53 E-value=0.64 Score=34.37 Aligned_cols=43 Identities=12% Similarity=0.026 Sum_probs=35.0
Q ss_pred hHHHHHHHHHHhCCCCCCchHHHHhhCCCCCCHHHHHHHhhhhhhhhhcccCC
Q 027234 160 LHQQFVSAVKELGFDKAGPKKILELMNIPGLTRENVASHLQKHRLYLSRLSGV 212 (226)
Q Consensus 160 l~~~Fi~~~~~~g~~~~~p~~I~~~~~~~~lt~~~va~~l~~~r~~l~r~~~~ 212 (226)
-.++++.++.+ ++..-.-.++|+++||.+.|+||..||+-|+.
T Consensus 17 ~r~~Il~aa~~----------l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~s 59 (211)
T 3him_A 17 AAARIRAAAIE----------VFAAKGYGATTTREIAASLDMSPGAVYPHYKT 59 (211)
T ss_dssp HHHHHHHHHHH----------HHHHHCSTTCCHHHHHHHTTCCTTSSTTTCSS
T ss_pred HHHHHHHHHHH----------HHHHcCCCcCCHHHHHHHhCCCcChhhhcCCC
Confidence 35677888887 44445667899999999999999999998874
No 149
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=86.52 E-value=0.44 Score=28.97 Aligned_cols=30 Identities=17% Similarity=-0.017 Sum_probs=24.5
Q ss_pred HHHHhhCCCCCCHHHHHHHhhhhhhhhhcc
Q 027234 180 KILELMNIPGLTRENVASHLQKHRLYLSRL 209 (226)
Q Consensus 180 ~I~~~~~~~~lt~~~va~~l~~~r~~l~r~ 209 (226)
.|.+.+...+-++...|..||++|+.|||.
T Consensus 23 ~i~~aL~~~~gn~~~aA~~LGisr~tL~rk 52 (63)
T 3e7l_A 23 FIEEKLREYDYDLKRTAEEIGIDLSNLYRK 52 (63)
T ss_dssp HHHHHHHHTTTCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHCcCHHHHHHH
Confidence 455666566778999999999999999974
No 150
>3he0_A Transcriptional regulator, TETR family; ACRR, vibrio parahaemolytic structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.20A {Vibrio parahaemolyticus}
Probab=86.45 E-value=0.8 Score=33.50 Aligned_cols=42 Identities=14% Similarity=0.186 Sum_probs=34.0
Q ss_pred HHHHHHHHHHhCCCCCCchHHHHhhCCCCCCHHHHHHHhhhhhhhhhcccCC
Q 027234 161 HQQFVSAVKELGFDKAGPKKILELMNIPGLTRENVASHLQKHRLYLSRLSGV 212 (226)
Q Consensus 161 ~~~Fi~~~~~~g~~~~~p~~I~~~~~~~~lt~~~va~~l~~~r~~l~r~~~~ 212 (226)
.++++.++.. ++..-...+.|+++||.+.|+||..||+-|+.
T Consensus 13 r~~il~aa~~----------lf~~~G~~~~tv~~Ia~~agvs~~t~Y~~F~s 54 (196)
T 3he0_A 13 RDQILAAAEQ----------LIAESGFQGLSMQKLANEAGVAAGTIYRYFSD 54 (196)
T ss_dssp HHHHHHHHHH----------HHHHHCTTTCCHHHHHHHHTSCHHHHHTTCSS
T ss_pred HHHHHHHHHH----------HHHHhCcccCCHHHHHHHhCCCcchHHHhcCC
Confidence 4677777777 34444667899999999999999999998874
No 151
>3dcf_A Transcriptional regulator of the TETR/ACRR family; YP_290855.1, structural genomics, joint center for structural genomics, JCSG; 2.50A {Thermobifida fusca YX}
Probab=86.40 E-value=0.68 Score=34.49 Aligned_cols=44 Identities=7% Similarity=0.079 Sum_probs=35.6
Q ss_pred hhHHHHHHHHHHhCCCCCCchHHHHhhCCCCCCHHHHHHHhhhhhhhhhcccCC
Q 027234 159 ELHQQFVSAVKELGFDKAGPKKILELMNIPGLTRENVASHLQKHRLYLSRLSGV 212 (226)
Q Consensus 159 ~l~~~Fi~~~~~~g~~~~~p~~I~~~~~~~~lt~~~va~~l~~~r~~l~r~~~~ 212 (226)
...++++.++.+ ++......++|+++||.+.++||..||+-|+.
T Consensus 31 ~~r~~Il~aa~~----------l~~~~G~~~~tv~~Ia~~agvs~~t~Y~~F~s 74 (218)
T 3dcf_A 31 DRRTQIIKVATE----------LFREKGYYATSLDDIADRIGFTKPAIYYYFKS 74 (218)
T ss_dssp HHHHHHHHHHHH----------HHHHTCTTTCCHHHHHHHHTCCHHHHHHHCSS
T ss_pred chHHHHHHHHHH----------HHHHcCcccCcHHHHHHHhCCCHHHHHHHcCC
Confidence 345778888887 44555667899999999999999999998864
No 152
>3kz9_A SMCR; transcriptional regulator, quorum S DNA-binding, transcription regulation, transcription regula; HET: MSE; 2.10A {Vibrio vulnificus} PDB: 2pbx_A
Probab=86.20 E-value=0.71 Score=33.98 Aligned_cols=43 Identities=14% Similarity=0.015 Sum_probs=35.0
Q ss_pred hHHHHHHHHHHhCCCCCCchHHHHhhCCCCCCHHHHHHHhhhhhhhhhcccCC
Q 027234 160 LHQQFVSAVKELGFDKAGPKKILELMNIPGLTRENVASHLQKHRLYLSRLSGV 212 (226)
Q Consensus 160 l~~~Fi~~~~~~g~~~~~p~~I~~~~~~~~lt~~~va~~l~~~r~~l~r~~~~ 212 (226)
-.++++.++.. ++..-...++|+++||.+.|+||..+|+-|+.
T Consensus 18 ~r~~Il~aa~~----------l~~~~G~~~~s~~~Ia~~agvs~~t~Y~~F~s 60 (206)
T 3kz9_A 18 RKQQLMEIALE----------VFARRGIGRGGHADIAEIAQVSVATVFNYFPT 60 (206)
T ss_dssp HHHHHHHHHHH----------HHHHSCCSSCCHHHHHHHHTSCHHHHHHHCCS
T ss_pred HHHHHHHHHHH----------HHHhcCcccccHHHHHHHhCCCHHHHHHHcCC
Confidence 35678888887 44455677899999999999999999998874
No 153
>3col_A Putative transcription regulator; structural genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 2.10A {Lactobacillus plantarum WCFS1}
Probab=85.81 E-value=0.61 Score=34.02 Aligned_cols=43 Identities=14% Similarity=0.063 Sum_probs=34.3
Q ss_pred hHHHHHHHHHHhCCCCCCchHHHHhhCCCCCCHHHHHHHhhhhhhhhhcccCC
Q 027234 160 LHQQFVSAVKELGFDKAGPKKILELMNIPGLTRENVASHLQKHRLYLSRLSGV 212 (226)
Q Consensus 160 l~~~Fi~~~~~~g~~~~~p~~I~~~~~~~~lt~~~va~~l~~~r~~l~r~~~~ 212 (226)
-.++++.++.+ ++..-...++|+++||...|+||..+|+-|+.
T Consensus 11 ~r~~Il~aa~~----------l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~F~s 53 (196)
T 3col_A 11 KQVKIQDAVAA----------IILAEGPAGVSTTKVAKRVGIAQSNVYLYFKN 53 (196)
T ss_dssp HHHHHHHHHHH----------HHHHHCGGGCCHHHHHHHHTSCHHHHHTTCSS
T ss_pred HHHHHHHHHHH----------HHHhcCcccCCHHHHHHHhCCcHHHHHHHhCC
Confidence 35677788777 33334666899999999999999999998874
No 154
>2fq4_A Transcriptional regulator, TETR family; DNA-binding protein, bacillu structural genomics, PSI, protein structure initiative; 1.79A {Bacillus cereus} SCOP: a.4.1.9 a.121.1.1
Probab=85.78 E-value=0.76 Score=33.84 Aligned_cols=44 Identities=16% Similarity=0.151 Sum_probs=35.4
Q ss_pred hhHHHHHHHHHHhCCCCCCchHHHHhhCCCCCCHHHHHHHhhhhhhhhhcccCC
Q 027234 159 ELHQQFVSAVKELGFDKAGPKKILELMNIPGLTRENVASHLQKHRLYLSRLSGV 212 (226)
Q Consensus 159 ~l~~~Fi~~~~~~g~~~~~p~~I~~~~~~~~lt~~~va~~l~~~r~~l~r~~~~ 212 (226)
...++++.++.+ +...-.-.+.|+++||.+.|+||..+|+-|+.
T Consensus 12 ~~r~~Il~aA~~----------lf~e~G~~~~t~~~IA~~agvsk~tlY~~F~s 55 (192)
T 2fq4_A 12 ETQKAILSASYE----------LLLESGFKAVTVDKIAERAKVSKATIYKWWPN 55 (192)
T ss_dssp HHHHHHHHHHHH----------HHHHHCTTTCCHHHHHHHHTCCHHHHHHHCSS
T ss_pred HHHHHHHHHHHH----------HHHHcCcccccHHHHHHHcCCCHHHHHHHCCC
Confidence 345678888888 44445667899999999999999999998764
No 155
>3lhq_A Acrab operon repressor (TETR/ACRR family); structural genomics, IDP02616, csgid, DNA-binding, transcription, transcription regulation; 1.56A {Salmonella enterica subsp} PDB: 3bcg_A 2qop_A
Probab=85.77 E-value=0.74 Score=34.21 Aligned_cols=43 Identities=7% Similarity=0.014 Sum_probs=34.4
Q ss_pred hHHHHHHHHHHhCCCCCCchHHHHhhCCCCCCHHHHHHHhhhhhhhhhcccCC
Q 027234 160 LHQQFVSAVKELGFDKAGPKKILELMNIPGLTRENVASHLQKHRLYLSRLSGV 212 (226)
Q Consensus 160 l~~~Fi~~~~~~g~~~~~p~~I~~~~~~~~lt~~~va~~l~~~r~~l~r~~~~ 212 (226)
..++++.++.+ ++..-.-.++|+++||.+.|+|+..||+-|+.
T Consensus 15 ~r~~Il~aa~~----------l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~F~s 57 (220)
T 3lhq_A 15 TRQHILDVALR----------LFSQQGVSATSLAEIANAAGVTRGAIYWHFKN 57 (220)
T ss_dssp HHHHHHHHHHH----------HHHHHCSTTCCHHHHHHHHTCCHHHHHHHCSS
T ss_pred HHHHHHHHHHH----------HHHHcCcccCCHHHHHHHhCCCceeehhhcCC
Confidence 35677888877 33444666899999999999999999998874
No 156
>3on4_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: MSE; 1.85A {Legionella pneumophila subsp}
Probab=85.74 E-value=0.53 Score=34.28 Aligned_cols=43 Identities=2% Similarity=0.091 Sum_probs=34.5
Q ss_pred hHHHHHHHHHHhCCCCCCchHHHHhhCCCCCCHHHHHHHhhhhhhhhhcccCC
Q 027234 160 LHQQFVSAVKELGFDKAGPKKILELMNIPGLTRENVASHLQKHRLYLSRLSGV 212 (226)
Q Consensus 160 l~~~Fi~~~~~~g~~~~~p~~I~~~~~~~~lt~~~va~~l~~~r~~l~r~~~~ 212 (226)
-.++++.++.+ ++..-.-.+.|+++||.+.|+|+..+|+-|+.
T Consensus 11 ~r~~Il~aa~~----------l~~~~G~~~~t~~~IA~~agvs~~t~Y~~F~s 53 (191)
T 3on4_A 11 TKERILAVAEA----------LIQKDGYNAFSFKDIATAINIKTASIHYHFPS 53 (191)
T ss_dssp HHHHHHHHHHH----------HHHHHCGGGCCHHHHHHHHTCCHHHHHHHCSS
T ss_pred HHHHHHHHHHH----------HHHHhCcccCCHHHHHHHhCCCcchhhhcCCC
Confidence 35677778777 44445666899999999999999999998874
No 157
>3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina}
Probab=85.66 E-value=1.6 Score=34.80 Aligned_cols=78 Identities=22% Similarity=0.255 Sum_probs=51.4
Q ss_pred HHHHHHhCCCCceEEEEccC--CCCCCH--------------------HHHHHHHhcC-CCCcEEEEeccCC------HH
Q 027234 14 ALDMLRTNKNGYDIVISDVH--MPDMDG--------------------FKLLELVGLE-MDLPVIMMCAHGS------KE 64 (226)
Q Consensus 14 al~~l~~~~~~~DlVl~D~~--mp~~dG--------------------~~l~~~l~~~-~~~pvI~ls~~~~------~~ 64 (226)
.+..+.+ .+.|+|=+++= -|-+|| +++++.++.. .++|+++++-.+. ..
T Consensus 37 ~~~~l~~--~GaD~iElgiPfSDP~aDGp~Iq~a~~~AL~~G~~~~~~~~~v~~ir~~~~~~Pivlm~Y~npv~~~g~e~ 114 (267)
T 3vnd_A 37 IIQTLVD--NGADALELGFPFSDPLADGPVIQGANLRSLAAGTTSSDCFDIITKVRAQHPDMPIGLLLYANLVFANGIDE 114 (267)
T ss_dssp HHHHHHH--TTCSSEEEECCCSCCTTCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCCEEEEECHHHHHHHCHHH
T ss_pred HHHHHHH--cCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEecCcHHHHhhHHH
Confidence 3444444 34899888842 244443 5666677654 7899998865332 45
Q ss_pred HHHHHHhCCcceEEeCCCCHHHHHHHHHH
Q 027234 65 VVMKGVTHDACDYLTKPVRIEELKNIWQH 93 (226)
Q Consensus 65 ~~~~a~~~ga~~yl~KP~~~~~L~~~l~~ 93 (226)
...++.+.|+++.+.-....++....++.
T Consensus 115 f~~~~~~aGvdgvii~Dlp~ee~~~~~~~ 143 (267)
T 3vnd_A 115 FYTKAQAAGVDSVLIADVPVEESAPFSKA 143 (267)
T ss_dssp HHHHHHHHTCCEEEETTSCGGGCHHHHHH
T ss_pred HHHHHHHcCCCEEEeCCCCHhhHHHHHHH
Confidence 67889999999999987777765444433
No 158
>1sgm_A Putative HTH-type transcriptional regulator YXAF; structural genomics, PSI, protein structure initiative; 2.00A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=85.63 E-value=0.72 Score=33.54 Aligned_cols=42 Identities=5% Similarity=0.024 Sum_probs=33.8
Q ss_pred HHHHHHHHHHhCCCCCCchHHHHhhCCCCCCHHHHHHHhhhhhhhhhcccCC
Q 027234 161 HQQFVSAVKELGFDKAGPKKILELMNIPGLTRENVASHLQKHRLYLSRLSGV 212 (226)
Q Consensus 161 ~~~Fi~~~~~~g~~~~~p~~I~~~~~~~~lt~~~va~~l~~~r~~l~r~~~~ 212 (226)
.++++.++.+ ++..-.-.++|+++||.+.|+||..+|+-|+.
T Consensus 8 r~~Il~aa~~----------l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~~ 49 (191)
T 1sgm_A 8 REKILHTASR----------LSQLQGYHATGLNQIVKESGAPKGSLYHFFPN 49 (191)
T ss_dssp HHHHHHHHHH----------HHHHHCTTTCCHHHHHHHHCCCSCHHHHSTTT
T ss_pred HHHHHHHHHH----------HHHHcCccccCHHHHHHHHCCCchhHHHHccc
Confidence 4567777777 44445666899999999999999999998874
No 159
>3f1b_A TETR-like transcriptional regulator; APC5888, rhodococcus SP. RHA1, structural genomics, PS protein structure initiative; 2.40A {Rhodococcus}
Probab=85.62 E-value=0.76 Score=33.78 Aligned_cols=42 Identities=14% Similarity=0.180 Sum_probs=33.8
Q ss_pred HHHHHHHHHHhCCCCCCchHHHHhhCCCCCCHHHHHHHhhhhhhhhhcccCC
Q 027234 161 HQQFVSAVKELGFDKAGPKKILELMNIPGLTRENVASHLQKHRLYLSRLSGV 212 (226)
Q Consensus 161 ~~~Fi~~~~~~g~~~~~p~~I~~~~~~~~lt~~~va~~l~~~r~~l~r~~~~ 212 (226)
.++++.++.+ ++..-...++|+++||.+.++||..||+-|+.
T Consensus 16 r~~Il~aa~~----------l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~F~s 57 (203)
T 3f1b_A 16 EQQMLDAAVD----------VFSDRGFHETSMDAIAAKAEISKPMLYLYYGS 57 (203)
T ss_dssp HHHHHHHHHH----------HHHHHCTTTCCHHHHHHHTTSCHHHHHHHCCS
T ss_pred HHHHHHHHHH----------HHHHcCcccccHHHHHHHhCCchHHHHHHhCC
Confidence 4567777777 44444667899999999999999999998864
No 160
>2fd5_A Transcriptional regulator; DNA-binding protein, structural G PSI, protein structure initiative, midwest center for struc genomics, MCSG; 1.70A {Pseudomonas aeruginosa} SCOP: a.4.1.9 a.121.1.1
Probab=85.38 E-value=1.1 Score=32.40 Aligned_cols=42 Identities=7% Similarity=-0.158 Sum_probs=33.9
Q ss_pred HHHHHHHHHHhCCCCCCchHHHHhhCCCCCCHHHHHHHhhhhhhhhhcccCC
Q 027234 161 HQQFVSAVKELGFDKAGPKKILELMNIPGLTRENVASHLQKHRLYLSRLSGV 212 (226)
Q Consensus 161 ~~~Fi~~~~~~g~~~~~p~~I~~~~~~~~lt~~~va~~l~~~r~~l~r~~~~ 212 (226)
.++++.++.+ ++..-.-.+.|+++||.+.|+|+..+|+-|+.
T Consensus 9 r~~Il~aA~~----------l~~~~G~~~~s~~~IA~~agvs~~tly~~F~s 50 (180)
T 2fd5_A 9 RARILGAATQ----------ALLERGAVEPSVGEVMGAAGLTVGGFYAHFQS 50 (180)
T ss_dssp HHHHHHHHHH----------HHHHHTTTSCCHHHHHHHTTCCGGGGGGTCSC
T ss_pred HHHHHHHHHH----------HHHHhCcccCCHHHHHHHhCCCccHHHHHCCC
Confidence 4677777777 34445566899999999999999999998874
No 161
>1neq_A DNA-binding protein NER; NMR {Enterobacteria phage MU} SCOP: a.35.1.2 PDB: 1ner_A
Probab=85.32 E-value=0.51 Score=29.80 Aligned_cols=32 Identities=6% Similarity=0.043 Sum_probs=26.9
Q ss_pred HHHHhhCCCCCCHHHHHHHhhhhhhhhhcccC
Q 027234 180 KILELMNIPGLTRENVASHLQKHRLYLSRLSG 211 (226)
Q Consensus 180 ~I~~~~~~~~lt~~~va~~l~~~r~~l~r~~~ 211 (226)
.|...+...++|..++|..+|++++++++...
T Consensus 13 ri~~~l~~~glT~~~LA~~~Gvs~stls~~~~ 44 (74)
T 1neq_A 13 DVIAGLKKRKLSLSALSRQFGYAPTTLANALE 44 (74)
T ss_dssp HHHHHHHTTSCCHHHHHHHHSSCHHHHHHTTT
T ss_pred HHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 56666667799999999999999999998744
No 162
>1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1
Probab=85.29 E-value=7.6 Score=30.04 Aligned_cols=78 Identities=17% Similarity=0.150 Sum_probs=53.4
Q ss_pred HHHHHHHHhCCCCce-EEEEccCCCC-CC--HHHHHHHHhcCCCCcEEEEeccCCHHHHHHHHhCCcceEEe------CC
Q 027234 12 EIALDMLRTNKNGYD-IVISDVHMPD-MD--GFKLLELVGLEMDLPVIMMCAHGSKEVVMKGVTHDACDYLT------KP 81 (226)
Q Consensus 12 ~eal~~l~~~~~~~D-lVl~D~~mp~-~d--G~~l~~~l~~~~~~pvI~ls~~~~~~~~~~a~~~ga~~yl~------KP 81 (226)
.+..+.+.+.. ++ +++++..-.+ .. .+++++.++...++|+|...+-.+.+.+.++++.|+++.+. .|
T Consensus 155 ~e~~~~~~~~G--~~~i~~~~~~~~g~~~g~~~~~i~~l~~~~~ipvia~GGI~~~~d~~~~~~~Gadgv~vgsal~~~~ 232 (252)
T 1ka9_F 155 VEWAVKGVELG--AGEILLTSMDRDGTKEGYDLRLTRMVAEAVGVPVIASGGAGRMEHFLEAFQAGAEAALAASVFHFGE 232 (252)
T ss_dssp HHHHHHHHHHT--CCEEEEEETTTTTTCSCCCHHHHHHHHHHCSSCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHTTS
T ss_pred HHHHHHHHHcC--CCEEEEecccCCCCcCCCCHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHCCCHHHHHHHHHHcCC
Confidence 44444444432 56 5556554222 12 38889988866789999988888889999999999999874 36
Q ss_pred CCHHHHHHHH
Q 027234 82 VRIEELKNIW 91 (226)
Q Consensus 82 ~~~~~L~~~l 91 (226)
+++.++...+
T Consensus 233 ~~~~~~~~~l 242 (252)
T 1ka9_F 233 IPIPKLKRYL 242 (252)
T ss_dssp SCHHHHHHHH
T ss_pred CCHHHHHHHH
Confidence 6777765543
No 163
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=85.23 E-value=0.38 Score=28.06 Aligned_cols=23 Identities=22% Similarity=0.206 Sum_probs=20.6
Q ss_pred CCCCHHHHHHHhhhhhhhhhccc
Q 027234 188 PGLTRENVASHLQKHRLYLSRLS 210 (226)
Q Consensus 188 ~~lt~~~va~~l~~~r~~l~r~~ 210 (226)
.++|..+||..|++|++.+++..
T Consensus 30 ~g~s~~eIA~~lgis~~TV~~~l 52 (55)
T 2x48_A 30 MGYTVQQIANALGVSERKVRRYL 52 (55)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHH
Confidence 48999999999999999998754
No 164
>3qqa_A CMER; alpha-helical, helix-turn-helix, DNA-binding, transcription regulation, transcription repressor, drug binding, transcri; HET: TCH; 2.20A {Campylobacter jejuni} PDB: 3hgy_A* 3qps_A* 2qco_A 3hgg_A*
Probab=85.19 E-value=0.87 Score=33.88 Aligned_cols=44 Identities=2% Similarity=-0.112 Sum_probs=35.7
Q ss_pred hhHHHHHHHHHHhCCCCCCchHHHHhhCCCCCCHHHHHHHhhhhhhhhhcccCC
Q 027234 159 ELHQQFVSAVKELGFDKAGPKKILELMNIPGLTRENVASHLQKHRLYLSRLSGV 212 (226)
Q Consensus 159 ~l~~~Fi~~~~~~g~~~~~p~~I~~~~~~~~lt~~~va~~l~~~r~~l~r~~~~ 212 (226)
.-.++++.++.+ ++..-...++|+++||.+.|+|+..+|+-|+.
T Consensus 19 ~~r~~Il~aA~~----------lf~~~G~~~~t~~~IA~~agvs~~tlY~~F~s 62 (216)
T 3qqa_A 19 ARQEKIKAVALE----------LFLTKGYQETSLSDIIKLSGGSYSNIYDGFKS 62 (216)
T ss_dssp HHHHHHHHHHHH----------HHHHTCTTTCCHHHHHHHHTTSCCSSSCSCCS
T ss_pred HHHHHHHHHHHH----------HHHHcChhhCCHHHHHHHhCCCHHHHHHhcCC
Confidence 345678888888 44555677899999999999999999998864
No 165
>1pb6_A Hypothetical transcriptional regulator YCDC; helix-loop-helix, dimer, structural genomics, PSI, protein structure initiative; 2.50A {Escherichia coli} PDB: 3loc_A*
Probab=85.12 E-value=0.8 Score=33.96 Aligned_cols=44 Identities=14% Similarity=0.089 Sum_probs=35.3
Q ss_pred hhHHHHHHHHHHhCCCCCCchHHHHhhCCCCCCHHHHHHHhhhhhhhhhcccCC
Q 027234 159 ELHQQFVSAVKELGFDKAGPKKILELMNIPGLTRENVASHLQKHRLYLSRLSGV 212 (226)
Q Consensus 159 ~l~~~Fi~~~~~~g~~~~~p~~I~~~~~~~~lt~~~va~~l~~~r~~l~r~~~~ 212 (226)
.-.++++.++.+ ++..-.-.++|+++||.+.|+|+..+|+-|+.
T Consensus 18 ~~r~~Il~aa~~----------l~~~~G~~~~s~~~Ia~~agvs~~t~Y~~F~s 61 (212)
T 1pb6_A 18 AKKKAILSAALD----------TFSQFGFHGTRLEQIAELAGVSKTNLLYYFPS 61 (212)
T ss_dssp HHHHHHHHHHHH----------HHHHHCTTTCCHHHHHHHTTSCHHHHHHHSSS
T ss_pred HHHHHHHHHHHH----------HHHHcCcchhhHHHHHHHHCCChhHHHHhCCC
Confidence 345678888888 34444667899999999999999999998864
No 166
>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima}
Probab=85.11 E-value=5.4 Score=31.23 Aligned_cols=68 Identities=12% Similarity=0.093 Sum_probs=47.3
Q ss_pred HHHHHHHHHhCCCCceEEEE-ccCCCC-CC--HHHHHHHHhcCCCCcEEEEeccCCHHHHHHHHhCCcceEEeC
Q 027234 11 AEIALDMLRTNKNGYDIVIS-DVHMPD-MD--GFKLLELVGLEMDLPVIMMCAHGSKEVVMKGVTHDACDYLTK 80 (226)
Q Consensus 11 ~~eal~~l~~~~~~~DlVl~-D~~mp~-~d--G~~l~~~l~~~~~~pvI~ls~~~~~~~~~~a~~~ga~~yl~K 80 (226)
..+..+.+.... ++.|++ ++.-.+ .. .+++++.++...++|+|...+-.+.+.+.+++..||++.+.=
T Consensus 158 ~~e~~~~~~~~G--~~~i~~t~~~~~g~~~g~~~~~i~~l~~~~~ipvia~GGI~~~ed~~~~~~~Gadgv~vg 229 (266)
T 2w6r_A 158 LRDWVVEVEKRG--AGEILLTSIDRDGTKSGYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLAGADAALAA 229 (266)
T ss_dssp HHHHHHHHHHTT--CSEEEEEETTTTTTCSCCCHHHHHHHGGGCCSCEEEESCCCSHHHHHHHHHHTCSEEEES
T ss_pred HHHHHHHHHHcC--CCEEEEEeecCCCCcCCCCHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHcCCHHHHcc
Confidence 445545555533 666554 433111 12 378889998777899999999888899999999999998743
No 167
>3nrg_A TETR family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.56A {Chloroflexus aurantiacus}
Probab=85.08 E-value=0.74 Score=34.31 Aligned_cols=44 Identities=2% Similarity=0.024 Sum_probs=35.3
Q ss_pred hhHHHHHHHHHHhCCCCCCchHHHHhhCCCCCCHHHHHHHhhhhhhhhhcccCC
Q 027234 159 ELHQQFVSAVKELGFDKAGPKKILELMNIPGLTRENVASHLQKHRLYLSRLSGV 212 (226)
Q Consensus 159 ~l~~~Fi~~~~~~g~~~~~p~~I~~~~~~~~lt~~~va~~l~~~r~~l~r~~~~ 212 (226)
.-.++++.++.+ +...-...+.|+++||.+.++|+..+|+-|+.
T Consensus 13 ~~r~~Il~aA~~----------lf~~~G~~~~t~~~IA~~agvs~~tlY~~F~s 56 (217)
T 3nrg_A 13 EKRSRLIDVLLD----------EFAQNDYDSVSINRITERAGIAKGSFYQYFAD 56 (217)
T ss_dssp HHHHHHHHHHHH----------HHHHSCGGGCCHHHHHHHHTCCTTGGGGTCSS
T ss_pred HHHHHHHHHHHH----------HHHhcCcccCCHHHHHHHhCCcHHHHHHHcCC
Confidence 345678888887 44445666899999999999999999998875
No 168
>3o07_A Pyridoxine biosynthesis protein SNZ1; (beta/alpha)8-barrel, pyridoxal 5-phosphate synthase, PLP G3 SNO1, biosynthetic protein; HET: 1GP; 1.80A {Saccharomyces cerevisiae} PDB: 3o06_A 3o05_A* 3fem_A
Probab=85.05 E-value=7.7 Score=31.11 Aligned_cols=96 Identities=14% Similarity=0.034 Sum_probs=68.3
Q ss_pred EEEECCHHHHHHHHHhCCCCceEEEEccC-------------------------C-CC----------CCHHHHHHHHhc
Q 027234 5 VTKCNRAEIALDMLRTNKNGYDIVISDVH-------------------------M-PD----------MDGFKLLELVGL 48 (226)
Q Consensus 5 V~~~~~~~eal~~l~~~~~~~DlVl~D~~-------------------------m-p~----------~dG~~l~~~l~~ 48 (226)
|.-|.|..||+..+... .|+|=+-.. | .. ...+++++.+++
T Consensus 119 v~~~~~l~EAlrri~eG---A~mIrTtge~gtg~v~~av~h~r~~~~~i~~l~g~~t~~el~~~a~~~~ad~elI~~Ike 195 (291)
T 3o07_A 119 VCGAKDLGEALRRINEG---AAMIRTKGEAGTGDVSEAVKHIRRITEEIKACQQLKSEDDIAKVAEEMRVPVSLLKDVLE 195 (291)
T ss_dssp EEEESSHHHHHHHHHHT---CSEEEECCCTTSCCTHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred EeeCCCHHHHHHHHHCC---CCEEEecCcCCCccHHHHHHHHHHHHHHHHHHHcCCCHHHhhhcccccCCCHHHHHHHHH
Confidence 34688999999999865 688876411 2 11 234677888876
Q ss_pred CCCCcEEEE--eccCCHHHHHHHHhCCcceEE-----eCCCCHHHHHHHHHHHHHHHhhhhh
Q 027234 49 EMDLPVIMM--CAHGSKEVVMKGVTHDACDYL-----TKPVRIEELKNIWQHVVRKRKNERK 103 (226)
Q Consensus 49 ~~~~pvI~l--s~~~~~~~~~~a~~~ga~~yl-----~KP~~~~~L~~~l~~~~~~~~~~~~ 103 (226)
...+|||++ .+-...+.+..+++.|+++.+ .+.-++......+...+........
T Consensus 196 ~~~IPVV~IAnGGI~TpedA~~~le~GaDGVmVGrAI~~s~DP~~~Akafv~Av~~~~~~~~ 257 (291)
T 3o07_A 196 KGKLPVVNFAAGGVATPADAALLMQLGCDGVFVGSGIFKSSNPVRLATAVVEATTHFDNPSK 257 (291)
T ss_dssp HTSCSSCEEBCSSCCSHHHHHHHHHTTCSCEEECGGGGGSSCHHHHHHHHHHHHHTTTCHHH
T ss_pred ccCCCEEEecCCCCCCHHHHHHHHHhCCCEEEEchHHhCCCCHHHHHHHHHHHHHhccCHHH
Confidence 688999887 333468999999999999987 4456678887777777765443333
No 169
>2g7s_A Transcriptional regulator, TETR family; APC5906, PSI, protein structure initiat midwest center for structural genomics, MCSG; HET: MSE; 1.40A {Agrobacterium tumefaciens str} SCOP: a.4.1.9 a.121.1.1
Probab=84.91 E-value=0.57 Score=34.15 Aligned_cols=43 Identities=0% Similarity=0.004 Sum_probs=33.9
Q ss_pred hHHHHHHHHHHhCCCCCCchHHHHhhCCCCCCHHHHHHHhhhhhhhhhcccCC
Q 027234 160 LHQQFVSAVKELGFDKAGPKKILELMNIPGLTRENVASHLQKHRLYLSRLSGV 212 (226)
Q Consensus 160 l~~~Fi~~~~~~g~~~~~p~~I~~~~~~~~lt~~~va~~l~~~r~~l~r~~~~ 212 (226)
-.++++.++.+ ++..-.-.++|+++||.+.|+||..+|+-|+.
T Consensus 9 ~r~~Il~aa~~----------l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~F~s 51 (194)
T 2g7s_A 9 KADDILQCART----------LIIRGGYNSFSYADISQVVGIRNASIHHHFPS 51 (194)
T ss_dssp HHHHHHHHHHH----------HHHHHCGGGCCHHHHHHHHCCCHHHHHHHCSS
T ss_pred hHHHHHHHHHH----------HHHHcCcccCCHHHHHHHhCCCchHHHHHcCC
Confidence 35677777777 33344566899999999999999999998874
No 170
>2v57_A TETR family transcriptional repressor LFRR; DNA-binding, transcription regulation; HET: PRL; 1.90A {Mycobacterium smegmatis} PDB: 2wgb_A
Probab=84.91 E-value=0.59 Score=34.16 Aligned_cols=42 Identities=12% Similarity=0.086 Sum_probs=34.7
Q ss_pred hhHHHHHHHHHHhCCCCCCchHHHHhhCCCCCCHHHHHHHhhhhhhhhhcccCC
Q 027234 159 ELHQQFVSAVKELGFDKAGPKKILELMNIPGLTRENVASHLQKHRLYLSRLSGV 212 (226)
Q Consensus 159 ~l~~~Fi~~~~~~g~~~~~p~~I~~~~~~~~lt~~~va~~l~~~r~~l~r~~~~ 212 (226)
...++++.++.+ .+.+. .+.|+++||.+.|+|+..||+-|+.
T Consensus 14 ~~r~~Il~aA~~---------lf~~~---~~~t~~~Ia~~agvs~~t~Y~~F~s 55 (190)
T 2v57_A 14 RTRRAILDAAML---------VLADH---PTAALGDIAAAAGVGRSTVHRYYPE 55 (190)
T ss_dssp HHHHHHHHHHHH---------HHTTC---TTCCHHHHHHHHTCCHHHHHHHCSS
T ss_pred HHHHHHHHHHHH---------HHHHc---CCCCHHHHHHHhCCCHHHHHHHcCC
Confidence 345678888888 35555 6999999999999999999998864
No 171
>4fe7_A Xylose operon regulatory protein; HTH_ARAC, helix-turn-helix, PBP, periplasmic binding protein binding transcription regulator, DNA xylose; HET: XYS; 2.90A {Escherichia coli} PDB: 4fe4_A
Probab=84.84 E-value=0.37 Score=40.63 Aligned_cols=37 Identities=14% Similarity=0.014 Sum_probs=30.5
Q ss_pred HHHHhhCCCCCCHHHHHHHhhhhhhhhhcccCCC-CCCC
Q 027234 180 KILELMNIPGLTRENVASHLQKHRLYLSRLSGVS-PQQG 217 (226)
Q Consensus 180 ~I~~~~~~~~lt~~~va~~l~~~r~~l~r~~~~~-~~~~ 217 (226)
.|.+++.. .++++++|+++++|+++|+|+|+.. ++.+
T Consensus 313 ~i~~~~~~-~~~~~~~a~~~~~s~~~l~r~f~~~~g~s~ 350 (412)
T 4fe7_A 313 YIRNHACK-GIKVDQVLDAVGISRSNLEKRFKEEVGETI 350 (412)
T ss_dssp HHHHHGGG-TCCHHHHHHHTTCCHHHHHHHHHHHHSSCH
T ss_pred HHHhhccC-CCCHHHHHHHHCcCHHHHHHHHHHHHCcCH
Confidence 57788765 9999999999999999999988654 4443
No 172
>1zk8_A Transcriptional regulator, TETR family; TETR member,transcriptional regulator, STRU genomics, PSI, protein structure initiative; 2.15A {Bacillus cereus atcc 14579} SCOP: a.4.1.9 a.121.1.1
Probab=84.74 E-value=0.76 Score=33.36 Aligned_cols=42 Identities=19% Similarity=0.122 Sum_probs=33.0
Q ss_pred HHHHHHHHHHhCCCCCCchHHHHhhCCCCCCHHHHHHHhhhhhhhhhcccCC
Q 027234 161 HQQFVSAVKELGFDKAGPKKILELMNIPGLTRENVASHLQKHRLYLSRLSGV 212 (226)
Q Consensus 161 ~~~Fi~~~~~~g~~~~~p~~I~~~~~~~~lt~~~va~~l~~~r~~l~r~~~~ 212 (226)
.++++.++.+ ++..-.-.+.|+++||.+.|+||..+|+-|+.
T Consensus 10 r~~Il~aa~~----------l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~s 51 (183)
T 1zk8_A 10 LQKIVETAAE----------IADANGVQEVTLASLAQTLGVRSPSLYNHVKG 51 (183)
T ss_dssp HHHHHHHHHH----------HHHHHCGGGCCHHHHHHHHTSCHHHHTTTCSS
T ss_pred HHHHHHHHHH----------HHHhcCccccCHHHHHHHcCCCchHHHHHcCC
Confidence 4567777777 33334556899999999999999999998864
No 173
>2qko_A Possible transcriptional regulator, TETR family P; TETR family protein, structural genomics, P protein structure initiative; 2.35A {Rhodococcus SP}
Probab=84.63 E-value=0.78 Score=34.40 Aligned_cols=44 Identities=23% Similarity=0.116 Sum_probs=35.5
Q ss_pred hhHHHHHHHHHHhCCCCCCchHHHHhhCCCCCCHHHHHHHhhhhhhhhhcccCC
Q 027234 159 ELHQQFVSAVKELGFDKAGPKKILELMNIPGLTRENVASHLQKHRLYLSRLSGV 212 (226)
Q Consensus 159 ~l~~~Fi~~~~~~g~~~~~p~~I~~~~~~~~lt~~~va~~l~~~r~~l~r~~~~ 212 (226)
.-.++++.++.+ ++..-.-.++|+++||.+.++||..||+-|+.
T Consensus 28 ~~r~~Il~aa~~----------lf~~~G~~~~tv~~IA~~agvs~~t~Y~~F~s 71 (215)
T 2qko_A 28 ERRAALVNAAIE----------VLAREGARGLTFRAVDVEANVPKGTASNYFPS 71 (215)
T ss_dssp HHHHHHHHHHHH----------HHHHTCTTTCCHHHHHHHSSSTTTCHHHHCSC
T ss_pred HHHHHHHHHHHH----------HHHHhChhhccHHHHHHHcCCCcchHHHhCCC
Confidence 345678888887 44445666899999999999999999998864
No 174
>3dew_A Transcriptional regulator, TETR family; S genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 1.75A {Geobacter sulfurreducens}
Probab=84.59 E-value=0.63 Score=34.22 Aligned_cols=43 Identities=12% Similarity=0.121 Sum_probs=34.1
Q ss_pred hHHHHHHHHHHhCCCCCCchHHHHhhCCCCCCHHHHHHHhhhhhhhhhcccCC
Q 027234 160 LHQQFVSAVKELGFDKAGPKKILELMNIPGLTRENVASHLQKHRLYLSRLSGV 212 (226)
Q Consensus 160 l~~~Fi~~~~~~g~~~~~p~~I~~~~~~~~lt~~~va~~l~~~r~~l~r~~~~ 212 (226)
..++++.++.+ ++..-...++|+++||.+.|+||..||+-|+.
T Consensus 9 ~r~~Il~aa~~----------l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~s 51 (206)
T 3dew_A 9 CRSRLMEVATE----------LFAQKGFYGVSIRELAQAAGASISMISYHFGG 51 (206)
T ss_dssp HHHHHHHHHHH----------HHHHHCGGGCCHHHHHHHHTCCHHHHHHHSCH
T ss_pred HHHHHHHHHHH----------HHhcCCcccCcHHHHHHHhCCCHHHHHHHcCC
Confidence 34677778777 44445666899999999999999999998863
No 175
>3vpr_A Transcriptional regulator, TETR family; all alpha, helix-turn-helix, transcriptional repressor, DNA protein; 2.27A {Thermus thermophilus}
Probab=84.56 E-value=0.82 Score=33.51 Aligned_cols=42 Identities=10% Similarity=0.132 Sum_probs=32.9
Q ss_pred HHHHHHHHHHhCCCCCCchHHHHhhCCCCCCHHHHHHHhhhhhhhhhcccCC
Q 027234 161 HQQFVSAVKELGFDKAGPKKILELMNIPGLTRENVASHLQKHRLYLSRLSGV 212 (226)
Q Consensus 161 ~~~Fi~~~~~~g~~~~~p~~I~~~~~~~~lt~~~va~~l~~~r~~l~r~~~~ 212 (226)
.++++.++.+ +...-.-.+.|+++||.+.|+||..+|+-|+.
T Consensus 5 r~~Il~aA~~----------lf~~~G~~~~s~~~IA~~agvsk~t~Y~~F~s 46 (190)
T 3vpr_A 5 RDRILEEAAK----------LFTEKGYEATSVQDLAQALGLSKAALYHHFGS 46 (190)
T ss_dssp HHHHHHHHHH----------HHHHHCSTTCCHHHHHHHHTCCHHHHHHHHSS
T ss_pred HHHHHHHHHH----------HHHHhCcccCCHHHHHHHhCCCHHHHHHHcCC
Confidence 3566677776 44445667899999999999999999997764
No 176
>2ras_A Transcriptional regulator, TETR family; bacterial regulatory proteins, DNA-binding, DNA binding 3-helical bundle fold; 1.80A {Novosphingobium aromaticivorans}
Probab=84.52 E-value=1.1 Score=33.36 Aligned_cols=43 Identities=23% Similarity=0.257 Sum_probs=34.6
Q ss_pred hHHHHHHHHHHhCCCCCCchHHHHhhCCCCCCHHHHHHHhhhhhhhhhcccCC
Q 027234 160 LHQQFVSAVKELGFDKAGPKKILELMNIPGLTRENVASHLQKHRLYLSRLSGV 212 (226)
Q Consensus 160 l~~~Fi~~~~~~g~~~~~p~~I~~~~~~~~lt~~~va~~l~~~r~~l~r~~~~ 212 (226)
..++++.++.+ ++..-.-.+.|+++||.+.|+|+..+|+-|+.
T Consensus 12 ~r~~Il~aA~~----------lf~~~G~~~~s~~~IA~~agvs~~t~Y~~F~s 54 (212)
T 2ras_A 12 MRARLVDVAQA----------IVEERGGAGLTLSELAARAGISQANLSRYFET 54 (212)
T ss_dssp HHHHHHHHHHH----------HHHHHTSSCCCHHHHHHHHTSCHHHHTTTCSS
T ss_pred HHHHHHHHHHH----------HHHHhCcccCcHHHHHHHhCCCHHHHHHHcCC
Confidence 35678888887 33444566899999999999999999998874
No 177
>2rae_A Transcriptional regulator, ACRR family protein; TETR/ACRR family transcriptional regulator, structural genom 2, RHA08332, MCSG; 2.20A {Rhodococcus SP}
Probab=84.48 E-value=0.9 Score=33.64 Aligned_cols=44 Identities=14% Similarity=0.051 Sum_probs=35.1
Q ss_pred hHHHHHHHHHHhCCCCCCchHHHHhhCCCCCCHHHHHHHhhhhhhhhhcccCCC
Q 027234 160 LHQQFVSAVKELGFDKAGPKKILELMNIPGLTRENVASHLQKHRLYLSRLSGVS 213 (226)
Q Consensus 160 l~~~Fi~~~~~~g~~~~~p~~I~~~~~~~~lt~~~va~~l~~~r~~l~r~~~~~ 213 (226)
..++++.++.+ ++..-...++|+++||.+.|+||..||+-|+.-
T Consensus 18 ~r~~Il~aa~~----------l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~F~sK 61 (207)
T 2rae_A 18 TQDRISTVGIE----------LFTEQGFDATSVDEVAEASGIARRTLFRYFPSK 61 (207)
T ss_dssp HHHHHHHHHHH----------HHHHHCTTTSCHHHHHHHTTSCHHHHHHHCSST
T ss_pred HHHHHHHHHHH----------HHHHcCcccCCHHHHHHHhCCCcchHhhhCCCH
Confidence 45677778777 444455668999999999999999999988754
No 178
>3cwr_A Transcriptional regulator, TETR family; YP_425770.1, transcriptional regulator of TETR family, bacterial regulatory proteins; 1.50A {Rhodospirillum rubrum atcc 11170}
Probab=84.34 E-value=0.66 Score=34.21 Aligned_cols=44 Identities=23% Similarity=0.229 Sum_probs=35.4
Q ss_pred hhHHHHHHHHHHhCCCCCCchHHHHhhCCCCCCHHHHHHHhhhhhhhhhcccCC
Q 027234 159 ELHQQFVSAVKELGFDKAGPKKILELMNIPGLTRENVASHLQKHRLYLSRLSGV 212 (226)
Q Consensus 159 ~l~~~Fi~~~~~~g~~~~~p~~I~~~~~~~~lt~~~va~~l~~~r~~l~r~~~~ 212 (226)
.-.++++.++.+ ++..-...++|+++||.+.|+|+..+|+-|+.
T Consensus 17 ~~r~~Il~aa~~----------lf~~~G~~~~ti~~Ia~~agvs~~t~Y~~F~s 60 (208)
T 3cwr_A 17 VVRESIVGAAQR----------LLSSGGAAAMTMEGVASEAGIAKKTLYRFASG 60 (208)
T ss_dssp HHHHHHHHHHHH----------HHHHHCGGGCCHHHHHHHHTCCHHHHHHHCSS
T ss_pred HHHHHHHHHHHH----------HHHHcCHHhccHHHHHHHhCCCHHHHHHHcCC
Confidence 345788888888 44444666899999999999999999998864
No 179
>3bru_A Regulatory protein, TETR family; structural genomics, APC88928, PSI-2, protein structur initiative; 2.30A {Rhodobacter sphaeroides 2}
Probab=84.33 E-value=0.94 Score=33.90 Aligned_cols=44 Identities=11% Similarity=0.006 Sum_probs=35.3
Q ss_pred hhHHHHHHHHHHhCCCCCCchHHHHhhCCCCCCHHHHHHHhhhhhhhhhcccCC
Q 027234 159 ELHQQFVSAVKELGFDKAGPKKILELMNIPGLTRENVASHLQKHRLYLSRLSGV 212 (226)
Q Consensus 159 ~l~~~Fi~~~~~~g~~~~~p~~I~~~~~~~~lt~~~va~~l~~~r~~l~r~~~~ 212 (226)
.-.++++.++.+ ++..-.-.++|+++||.+.|+||..||+-|+.
T Consensus 30 ~~r~~Il~aA~~----------l~~~~G~~~~t~~~IA~~aGvs~~t~Y~~F~s 73 (222)
T 3bru_A 30 LAHQSLIRAGLE----------HLTEKGYSSVGVDEILKAARVPKGSFYHYFRN 73 (222)
T ss_dssp GHHHHHHHHHHH----------HHHHSCTTTCCHHHHHHHHTCCHHHHHHHCSS
T ss_pred hHHHHHHHHHHH----------HHHHcCCCcCcHHHHHHHhCCCcchhhhhCCC
Confidence 345678888888 44445666899999999999999999998864
No 180
>2hxo_A Putative TETR-family transcriptional regulator; TETR transcriptional regulator, structural genomics, PSI-2, structure initiative; 2.40A {Streptomyces coelicolor}
Probab=84.25 E-value=1.4 Score=34.11 Aligned_cols=42 Identities=21% Similarity=0.167 Sum_probs=34.4
Q ss_pred HHHHHHHHHHhCCCCCCchHHHHhhCCCCCCHHHHHHHhhhhhhhhhcccCC
Q 027234 161 HQQFVSAVKELGFDKAGPKKILELMNIPGLTRENVASHLQKHRLYLSRLSGV 212 (226)
Q Consensus 161 ~~~Fi~~~~~~g~~~~~p~~I~~~~~~~~lt~~~va~~l~~~r~~l~r~~~~ 212 (226)
.++++.++.. ++..-...++|+..||.++++++..||+-|+.
T Consensus 18 r~~Il~aA~~----------l~~~~G~~~~s~~~IA~~aGvs~~tlY~hF~~ 59 (237)
T 2hxo_A 18 RERIVGAAVE----------LLDTVGERGLTFRALAERLATGPGAIYWHITG 59 (237)
T ss_dssp HHHHHHHHHH----------HHHHTTTTTCCHHHHHHHHTSCGGGGGGTCCC
T ss_pred HHHHHHHHHH----------HHHhcCcccCCHHHHHHHHCCChHHHHHhcCC
Confidence 5677777777 44555667899999999999999999998874
No 181
>3egq_A TETR family transcriptional regulator; DNA-binding, transcription regulation, bacterial regulatory DNA/RNA-binding 3-helical bundle fold; HET: MSE PE8; 2.55A {Archaeoglobus fulgidus}
Probab=84.24 E-value=0.59 Score=33.55 Aligned_cols=42 Identities=7% Similarity=-0.009 Sum_probs=31.7
Q ss_pred HHHHHHHHHHhCCCCCCchHHHHhhCCCCCCHHHHHHHhhhhhhhhhcccCC
Q 027234 161 HQQFVSAVKELGFDKAGPKKILELMNIPGLTRENVASHLQKHRLYLSRLSGV 212 (226)
Q Consensus 161 ~~~Fi~~~~~~g~~~~~p~~I~~~~~~~~lt~~~va~~l~~~r~~l~r~~~~ 212 (226)
.++++.++.+ ++..-.-.++|+++||.+.|+||..+|+-|+.
T Consensus 6 r~~Il~aa~~----------l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~s 47 (170)
T 3egq_A 6 SVRIIEAALR----------LYMKKPPHEVSIEEIAREAKVSKSLIFYHFES 47 (170)
T ss_dssp HHHHHHHHHH----------HHTTSCGGGCCHHHHHHHHTSCHHHHHHHCSS
T ss_pred HHHHHHHHHH----------HHHhcCCccCcHHHHHHHhCCCchhHHHHcCC
Confidence 4566666666 33333445789999999999999999998864
No 182
>4hku_A LMO2814 protein, TETR transcriptional regulator; structural genomics, PSI-biology; 2.30A {Listeria monocytogenes}
Probab=84.23 E-value=0.92 Score=33.07 Aligned_cols=42 Identities=14% Similarity=0.104 Sum_probs=32.8
Q ss_pred HHHHHHHHHHhCCCCCCchHHHHhhCCCCCCHHHHHHHhhhhhhhhhcccCC
Q 027234 161 HQQFVSAVKELGFDKAGPKKILELMNIPGLTRENVASHLQKHRLYLSRLSGV 212 (226)
Q Consensus 161 ~~~Fi~~~~~~g~~~~~p~~I~~~~~~~~lt~~~va~~l~~~r~~l~r~~~~ 212 (226)
.++++.++.+ +...-.-.+.|+++||.+.|+|+..+|+-|+.
T Consensus 9 Re~Il~aA~~----------lf~~~G~~~~s~~~IA~~aGvs~~tlY~~F~s 50 (178)
T 4hku_A 9 QEIILNMAEK----------IIYEKGMEKTTLYDIASNLNVTHAALYKHYRN 50 (178)
T ss_dssp HHHHHHHHHH----------HHHHHCGGGCCHHHHHHHTTSCGGGGGGTCSS
T ss_pred HHHHHHHHHH----------HHHHhCcccccHHHHHHHhCcCHhHHHHHCCC
Confidence 3567777777 33334556889999999999999999998874
No 183
>2qtq_A Transcriptional regulator, TETR family; transcription regulator, DNA/RNA-binding 3-helical bundle FO turn helix motif, HTH motif; HET: MSE; 1.85A {Novosphingobium aromaticivorans} PDB: 2rha_A*
Probab=84.20 E-value=0.79 Score=33.99 Aligned_cols=44 Identities=5% Similarity=0.070 Sum_probs=34.8
Q ss_pred hhHHHHHHHHHHhCCCCCCchHHHHhhCCCCCCHHHHHHHhhhhhhhhhcccCC
Q 027234 159 ELHQQFVSAVKELGFDKAGPKKILELMNIPGLTRENVASHLQKHRLYLSRLSGV 212 (226)
Q Consensus 159 ~l~~~Fi~~~~~~g~~~~~p~~I~~~~~~~~lt~~~va~~l~~~r~~l~r~~~~ 212 (226)
...++++.++.+ ++..-.-.++|+++||.+.++||..+|+-|+.
T Consensus 16 ~~r~~Il~aa~~----------lf~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~s 59 (213)
T 2qtq_A 16 GARDLLLQTASN----------IMREGDVVDISLSELSLRSGLNSALVKYYFGN 59 (213)
T ss_dssp THHHHHHHHHHH----------HHHHHTSSCCCHHHHHHHHCCCHHHHHHHHSS
T ss_pred hHHHHHHHHHHH----------HHHHcCcccccHHHHHHHhCCChhhHhHhcCC
Confidence 345677888877 34445566899999999999999999998864
No 184
>3ccy_A Putative TETR-family transcriptional regulator; APC88698, structural G PSI-2, protein structure initiative; HET: MSE; 2.01A {Bordetella parapertussis 12822}
Probab=84.07 E-value=1.3 Score=32.73 Aligned_cols=43 Identities=5% Similarity=0.057 Sum_probs=34.5
Q ss_pred hHHHHHHHHHHhCCCCCCchHHHHhhCCCCCCHHHHHHHhhhhhhhhhcccCC
Q 027234 160 LHQQFVSAVKELGFDKAGPKKILELMNIPGLTRENVASHLQKHRLYLSRLSGV 212 (226)
Q Consensus 160 l~~~Fi~~~~~~g~~~~~p~~I~~~~~~~~lt~~~va~~l~~~r~~l~r~~~~ 212 (226)
-.++++.++.+ +...-.-.+.|+++||...|+||..||+-|+.
T Consensus 15 ~r~~Il~aA~~----------lf~~~G~~~~s~~~Ia~~agvs~~t~Y~yF~s 57 (203)
T 3ccy_A 15 IRDTIIERAAA----------MFARQGYSETSIGDIARACECSKSRLYHYFDS 57 (203)
T ss_dssp HHHHHHHHHHH----------HHHHTCTTTSCHHHHHHHTTCCGGGGTTTCSC
T ss_pred HHHHHHHHHHH----------HHHHcCcccCCHHHHHHHhCCCcCeeeeeeCC
Confidence 35677888877 44444666899999999999999999998864
No 185
>2dg7_A Putative transcriptional regulator; helix-turn-helix motif, TETR family, gene regulation; 2.30A {Streptomyces coelicolor}
Probab=84.02 E-value=0.65 Score=34.19 Aligned_cols=45 Identities=16% Similarity=0.049 Sum_probs=34.8
Q ss_pred hHHHHHHHHHHhCCCCCCchHHHHhhCCCCCCHHHHHHHhhhhhhhhhcccCCCC
Q 027234 160 LHQQFVSAVKELGFDKAGPKKILELMNIPGLTRENVASHLQKHRLYLSRLSGVSP 214 (226)
Q Consensus 160 l~~~Fi~~~~~~g~~~~~p~~I~~~~~~~~lt~~~va~~l~~~r~~l~r~~~~~~ 214 (226)
-.++++.++.+ ++..-...++|+++||.+.|+||..||+-|+.-.
T Consensus 8 ~r~~Il~aA~~----------l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~sK~ 52 (195)
T 2dg7_A 8 AEQRLKRAALE----------LYSEHGYDNVTVTDIAERAGLTRRSYFRYFPDKR 52 (195)
T ss_dssp HHHHHHHHHHH----------HHHHSCGGGCCHHHHHHHTTCCHHHHHHHCSSTT
T ss_pred HHHHHHHHHHH----------HHHhcCccccCHHHHHHHhCCCHHHHHHHcCCHH
Confidence 34677777777 3444456689999999999999999999887643
No 186
>1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ...
Probab=83.82 E-value=2.8 Score=33.26 Aligned_cols=72 Identities=18% Similarity=0.212 Sum_probs=49.3
Q ss_pred CCceEEEEccCC--CCCC--------------------HHHHHHHHhcC-CCCcEEEEeccC------CHHHHHHHHhCC
Q 027234 23 NGYDIVISDVHM--PDMD--------------------GFKLLELVGLE-MDLPVIMMCAHG------SKEVVMKGVTHD 73 (226)
Q Consensus 23 ~~~DlVl~D~~m--p~~d--------------------G~~l~~~l~~~-~~~pvI~ls~~~------~~~~~~~a~~~g 73 (226)
.+.|+|-+|+-. |-+| ++++++.++.. .++|+++++-.. .......+...|
T Consensus 43 ~GaD~ieig~P~sdp~~DG~~i~~a~~~al~~G~~~~~~~~~v~~ir~~~~~~Pv~lm~y~n~v~~~g~~~~~~~~~~aG 122 (268)
T 1qop_A 43 AGADALELGVPFSDPLADGPTIQNANLRAFAAGVTPAQCFEMLAIIREKHPTIPIGLLMYANLVFNNGIDAFYARCEQVG 122 (268)
T ss_dssp TTCSSEEEECCCSCCTTCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSSSCEEEEECHHHHHTTCHHHHHHHHHHHT
T ss_pred CCCCEEEECCCCCCccCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEEcccHHHHhhHHHHHHHHHHcC
Confidence 348999998733 3333 34667777765 689998875222 146677889999
Q ss_pred cceEEeCCCCHHHHHHHHHHH
Q 027234 74 ACDYLTKPVRIEELKNIWQHV 94 (226)
Q Consensus 74 a~~yl~KP~~~~~L~~~l~~~ 94 (226)
+++++.-....+++...++.+
T Consensus 123 adgii~~d~~~e~~~~~~~~~ 143 (268)
T 1qop_A 123 VDSVLVADVPVEESAPFRQAA 143 (268)
T ss_dssp CCEEEETTCCGGGCHHHHHHH
T ss_pred CCEEEEcCCCHHHHHHHHHHH
Confidence 999999888776655554443
No 187
>3on2_A Probable transcriptional regulator; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG; HET: MSE PG6; 1.96A {Rhodococcus jostii}
Probab=83.82 E-value=0.73 Score=33.69 Aligned_cols=43 Identities=16% Similarity=0.139 Sum_probs=29.2
Q ss_pred hHHHHHHHHHHhCCCCCCchHHHHhhCCCCCCHHHHHHHhhhhhhhhhcccCC
Q 027234 160 LHQQFVSAVKELGFDKAGPKKILELMNIPGLTRENVASHLQKHRLYLSRLSGV 212 (226)
Q Consensus 160 l~~~Fi~~~~~~g~~~~~p~~I~~~~~~~~lt~~~va~~l~~~r~~l~r~~~~ 212 (226)
..++++.++.+ ++..-...++|+++||.+.|+|+..+|+-|+.
T Consensus 13 ~r~~Il~aA~~----------lf~~~G~~~~t~~~IA~~agvs~~t~Y~~F~s 55 (199)
T 3on2_A 13 LRRVLLARAES----------TLEKDGVDGLSLRQLAREAGVSHAAPSKHFRD 55 (199)
T ss_dssp HHHHHHHHHHH----------HHHHHCGGGCCHHHHHHHTC-----CCCSSSS
T ss_pred HHHHHHHHHHH----------HHHhcChhhhhHHHHHHHhCCChHHHHHHhCC
Confidence 34677777777 34444566899999999999999999998874
No 188
>3aqt_A Bacterial regulatory proteins, TETR family; helix-turn-helix, all alpha, transcription, transcription RE transcription regulator; 2.50A {Corynebacterium glutamicum} PDB: 3aqs_A
Probab=83.73 E-value=0.93 Score=34.96 Aligned_cols=44 Identities=0% Similarity=0.012 Sum_probs=34.6
Q ss_pred hhHHHHHHHHHHhCCCCCCchHHHHhhCCCCCCHHHHHHHhhhhhhhhhcccCC
Q 027234 159 ELHQQFVSAVKELGFDKAGPKKILELMNIPGLTRENVASHLQKHRLYLSRLSGV 212 (226)
Q Consensus 159 ~l~~~Fi~~~~~~g~~~~~p~~I~~~~~~~~lt~~~va~~l~~~r~~l~r~~~~ 212 (226)
...++++.++.+ ++..-...++|+++||.+.++||..||+-|+.
T Consensus 46 ~~r~~Il~aA~~----------lf~~~G~~~~t~~~IA~~aGvs~~t~Y~~F~s 89 (245)
T 3aqt_A 46 QTRARLITSART----------LMAERGVDNVGIAEITEGANIGTGTFYNYFPD 89 (245)
T ss_dssp HHHHHHHHHHHH----------HHHHHCGGGCCHHHHHHHTTSCGGGGGGTCSS
T ss_pred HHHHHHHHHHHH----------HHHhcCcccCcHHHHHHHhCCChHHHHHHcCC
Confidence 345677778777 33444566899999999999999999998874
No 189
>4adt_A Pyridoxine biosynthetic enzyme PDX1 homologue, PU; transferase, pyridoxal 5-phosphate biosynthesis; 2.42A {Plasmodium berghei} PDB: 4adu_A* 4ads_A
Probab=83.68 E-value=16 Score=29.51 Aligned_cols=89 Identities=11% Similarity=0.091 Sum_probs=59.6
Q ss_pred EEEECCHHHHHHHHHhCCCCceEEEEccC-------------------------CCC----------CCHHHHHHHHhcC
Q 027234 5 VTKCNRAEIALDMLRTNKNGYDIVISDVH-------------------------MPD----------MDGFKLLELVGLE 49 (226)
Q Consensus 5 V~~~~~~~eal~~l~~~~~~~DlVl~D~~-------------------------mp~----------~dG~~l~~~l~~~ 49 (226)
|..+.+..||...+... +|+|.+... |+. ...+++++.++..
T Consensus 129 vv~v~~~~Ea~~a~~~G---ad~I~v~g~~gTG~~~~~v~h~~~~~~eir~l~~~~~d~L~t~~~~~~~~~~ll~~i~~~ 205 (297)
T 4adt_A 129 VCGCTNLGEALRRISEG---ASMIRTKGEAGTGNIIEAIKHIRTVNNEIKYLCSLDESEVYNFAKKLRAPIDLILLTRKL 205 (297)
T ss_dssp EEEESSHHHHHHHHHHT---CSEEEECCCTTSCCCHHHHHHHHHHHHHHHHHHHSCTTTHHHHHHHHTCCHHHHHHHHHH
T ss_pred EEEeCCHHHHHHHHhCC---CCEEEECCCcCCCchHHHHHHHHHhhhhhhhhccccccccccccccCCCCHHHHHHHHHh
Confidence 44688999999888753 788888743 111 1125667777655
Q ss_pred CCCcEEE--EeccCCHHHHHHHHhCCcceEEe-----CCCCHHHHHHHHHHHHH
Q 027234 50 MDLPVIM--MCAHGSKEVVMKGVTHDACDYLT-----KPVRIEELKNIWQHVVR 96 (226)
Q Consensus 50 ~~~pvI~--ls~~~~~~~~~~a~~~ga~~yl~-----KP~~~~~L~~~l~~~~~ 96 (226)
..+|+|+ .++-.+.+.+..++..||++++. |.-++......+...+.
T Consensus 206 ~~iPVivvA~GGI~t~~dv~~~~~~GAdgVlVGsai~~a~dp~~~~~~l~~ai~ 259 (297)
T 4adt_A 206 KRLPVVNFAAGGIATPADAAMCMQLGMDGVFVGSGIFESENPQKMASSIVMAVS 259 (297)
T ss_dssp TSCSSEEEEESCCCSHHHHHHHHHTTCSCEEESHHHHTSSCHHHHHHHHHHHHH
T ss_pred cCCCeEEEecCCCCCHHHHHHHHHcCCCEEEEhHHHHcCCCHHHHHHHHHHHHH
Confidence 5678874 44555889999999999999884 45566555555554444
No 190
>3t76_A VANU, transcriptional regulator vanug; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.12A {Enterococcus faecalis} PDB: 3t75_A* 3tyr_A* 3tys_A*
Probab=83.64 E-value=0.34 Score=31.76 Aligned_cols=32 Identities=9% Similarity=0.199 Sum_probs=26.7
Q ss_pred HHHHhhCCCCCCHHHHHHHhhhhhhhhhcccC
Q 027234 180 KILELMNIPGLTRENVASHLQKHRLYLSRLSG 211 (226)
Q Consensus 180 ~I~~~~~~~~lt~~~va~~l~~~r~~l~r~~~ 211 (226)
.|.+.+..-++|..++|..+++|+++++++-+
T Consensus 28 rLk~lR~~~glTq~eLA~~~GiS~~tis~iE~ 59 (88)
T 3t76_A 28 KLWKLLIDRDMKKGELREAVGVSKSTFAKLGK 59 (88)
T ss_dssp HHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 46666666799999999999999999998754
No 191
>3bni_A Putative TETR-family transcriptional regulator; structural genomics, APC7281; HET: PG4; 2.30A {Streptomyces coelicolor A3}
Probab=83.64 E-value=1 Score=34.21 Aligned_cols=44 Identities=18% Similarity=0.175 Sum_probs=35.3
Q ss_pred hhHHHHHHHHHHhCCCCCCchHHHHhhCCCCCCHHHHHHHhhhhhhhhhcccCC
Q 027234 159 ELHQQFVSAVKELGFDKAGPKKILELMNIPGLTRENVASHLQKHRLYLSRLSGV 212 (226)
Q Consensus 159 ~l~~~Fi~~~~~~g~~~~~p~~I~~~~~~~~lt~~~va~~l~~~r~~l~r~~~~ 212 (226)
.-.++++.++.+ ++..-.-.++|+++||...++||..||+-|+.
T Consensus 43 ~~r~~Il~aA~~----------l~~~~G~~~~tv~~IA~~AGvs~~t~Y~~F~s 86 (229)
T 3bni_A 43 ERLTRILDACAD----------LLDEVGYDALSTRAVALRADVPIGSVYRFFGN 86 (229)
T ss_dssp HHHHHHHHHHHH----------HHHHHCTTTCCHHHHHHHHTCCHHHHHHHCSS
T ss_pred HHHHHHHHHHHH----------HHHhcChhhccHHHHHHHHCCCchhHHHHcCC
Confidence 345678888888 34445667899999999999999999998874
No 192
>3gzi_A Transcriptional regulator, TETR family; TETR family transcriptional regulator, structural genomics, center for structural genomics, JCSG; 2.05A {Shewanella loihica pv-4}
Probab=83.52 E-value=0.87 Score=33.97 Aligned_cols=43 Identities=9% Similarity=0.072 Sum_probs=35.0
Q ss_pred hHHHHHHHHHHhCCCCCCchHHHHhhCCCCCCHHHHHHHhhhhhhhhhcccCC
Q 027234 160 LHQQFVSAVKELGFDKAGPKKILELMNIPGLTRENVASHLQKHRLYLSRLSGV 212 (226)
Q Consensus 160 l~~~Fi~~~~~~g~~~~~p~~I~~~~~~~~lt~~~va~~l~~~r~~l~r~~~~ 212 (226)
..++++.++.+ ++..-...++|+++||.+.|+|+..+|+-|+.
T Consensus 18 ~r~~Il~aA~~----------l~~~~G~~~~t~~~IA~~agvs~~t~Y~~F~s 60 (218)
T 3gzi_A 18 NRDKLILAARN----------LFIERPYAQVSIREIASLAGTDPGLIRYYFGS 60 (218)
T ss_dssp HHHHHHHHHHH----------HHHTSCCSCCCHHHHHHHHTSCTHHHHHHHSS
T ss_pred HHHHHHHHHHH----------HHHHCCCCcCCHHHHHHHhCCCHHHHHHHcCC
Confidence 45678888888 44445666899999999999999999998864
No 193
>2yve_A Transcriptional regulator; helix-turn-helix, TETR-family; HET: MBT; 1.40A {Corynebacterium glutamicum} PDB: 1v7b_A 2zoy_A 2yvh_A 2dh0_A* 2zoz_A*
Probab=83.39 E-value=1 Score=32.96 Aligned_cols=42 Identities=7% Similarity=0.015 Sum_probs=32.5
Q ss_pred HHHHHHHHHHhCCCCCCchHHHHhhCCCCCCHHHHHHHhhhhhhhhhcccCC
Q 027234 161 HQQFVSAVKELGFDKAGPKKILELMNIPGLTRENVASHLQKHRLYLSRLSGV 212 (226)
Q Consensus 161 ~~~Fi~~~~~~g~~~~~p~~I~~~~~~~~lt~~~va~~l~~~r~~l~r~~~~ 212 (226)
.++++.++.. ++..-...++|+++||.+.|+||..+|+-|+.
T Consensus 6 r~~Il~aa~~----------l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~s 47 (185)
T 2yve_A 6 KEMILRTAID----------YIGEYSLETLSYDSLAEATGLSKSGLIYHFPS 47 (185)
T ss_dssp HHHHHHHHHH----------HHHHSCSTTCCHHHHHHHHCCCHHHHHHHCSS
T ss_pred HHHHHHHHHH----------HHHHcChhhccHHHHHHHhCCChHHHHHhCcC
Confidence 3456666666 34444566899999999999999999998864
No 194
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=83.30 E-value=9.7 Score=26.75 Aligned_cols=90 Identities=10% Similarity=-0.062 Sum_probs=59.4
Q ss_pred CcEEE---EECCHHHHHHHHHhCCCCceEEEEccCCCCC-C-HHHHHHHHhcC-C-CCcEEEEecc-----CCHH-HHHH
Q 027234 2 GFSVT---KCNRAEIALDMLRTNKNGYDIVISDVHMPDM-D-GFKLLELVGLE-M-DLPVIMMCAH-----GSKE-VVMK 68 (226)
Q Consensus 2 g~~V~---~~~~~~eal~~l~~~~~~~DlVl~D~~mp~~-d-G~~l~~~l~~~-~-~~pvI~ls~~-----~~~~-~~~~ 68 (226)
||+|. ...+.++..+.+.+.. +|+|.+...+... . --++++.+++. . +++|+ +.+. .+.. ....
T Consensus 31 G~~Vi~lG~~~p~e~~v~~a~~~~--~d~v~lS~~~~~~~~~~~~~i~~l~~~g~~~i~v~-vGG~~~~~~~~~~~~~~~ 107 (137)
T 1ccw_A 31 GFNVVNIGVLSPQELFIKAAIETK--ADAILVSSLYGQGEIDCKGLRQKCDEAGLEGILLY-VGGNIVVGKQHWPDVEKR 107 (137)
T ss_dssp TCEEEEEEEEECHHHHHHHHHHHT--CSEEEEEECSSTHHHHHTTHHHHHHHTTCTTCEEE-EEESCSSSSCCHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHhcC--CCEEEEEecCcCcHHHHHHHHHHHHhcCCCCCEEE-EECCCcCchHhhhhhHHH
Confidence 78876 4567899999998876 9999999888542 1 12345556532 2 46654 4443 2222 2455
Q ss_pred HHhCCcceEEeCCCCHHHHHHHHHHH
Q 027234 69 GVTHDACDYLTKPVRIEELKNIWQHV 94 (226)
Q Consensus 69 a~~~ga~~yl~KP~~~~~L~~~l~~~ 94 (226)
+.+.|++.|+.---+..++...+...
T Consensus 108 ~~~~G~d~~~~~g~~~~~~~~~l~~~ 133 (137)
T 1ccw_A 108 FKDMGYDRVYAPGTPPEVGIADLKKD 133 (137)
T ss_dssp HHHTTCSEECCTTCCHHHHHHHHHHH
T ss_pred HHHCCCCEEECCCCCHHHHHHHHHHH
Confidence 78899999998777777776665543
No 195
>2oi8_A Putative regulatory protein SCO4313; TETR, structural genomics, PSI-2, P structure initiative; 2.50A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=83.21 E-value=1.4 Score=33.37 Aligned_cols=44 Identities=11% Similarity=0.077 Sum_probs=35.8
Q ss_pred hhHHHHHHHHHHhCCCCCCchHHHHhhCCCCCCHHHHHHHhhhhhhhhhcccCC
Q 027234 159 ELHQQFVSAVKELGFDKAGPKKILELMNIPGLTRENVASHLQKHRLYLSRLSGV 212 (226)
Q Consensus 159 ~l~~~Fi~~~~~~g~~~~~p~~I~~~~~~~~lt~~~va~~l~~~r~~l~r~~~~ 212 (226)
...++++.++.+ ++..-...++|+++||.+.++|+..+|+-|+.
T Consensus 16 ~~r~~il~aA~~----------l~~~~G~~~~s~~~IA~~agvs~~t~Y~~F~~ 59 (216)
T 2oi8_A 16 QVRAEIKDHAWE----------QIATAGASALSLNAIAKRMGMSGPALYRYFDG 59 (216)
T ss_dssp HHHHHHHHHHHH----------HHHHHCTTSCCHHHHHHHTTCCHHHHHTTCSS
T ss_pred HHHHHHHHHHHH----------HHHhcCcccCCHHHHHHHhCCCHHHHHHHcCC
Confidence 445678888887 44455667899999999999999999998874
No 196
>3anp_C Transcriptional repressor, TETR family; all alpha protein, DNA, acyl-COA; HET: DCC DAO; 1.95A {Thermus thermophilus} PDB: 3ang_C*
Probab=83.17 E-value=1.2 Score=33.06 Aligned_cols=43 Identities=12% Similarity=0.047 Sum_probs=34.0
Q ss_pred hHHHHHHHHHHhCCCCCCchHHHHhhCCCCCCHHHHHHHhhhhhhhhhcccCC
Q 027234 160 LHQQFVSAVKELGFDKAGPKKILELMNIPGLTRENVASHLQKHRLYLSRLSGV 212 (226)
Q Consensus 160 l~~~Fi~~~~~~g~~~~~p~~I~~~~~~~~lt~~~va~~l~~~r~~l~r~~~~ 212 (226)
-.++++.++.+ +...-.-.+.|+++||...|+||..||+-|+.
T Consensus 10 ~r~~Il~aA~~----------lf~~~G~~~~t~~~Ia~~Agvs~gt~Y~yF~s 52 (204)
T 3anp_C 10 RRERIFRAAME----------LFRNRGFQETTATEIAKAAHVSRGTFFNYYPY 52 (204)
T ss_dssp HHHHHHHHHHH----------HHHHHCTTTCCHHHHHHHHTSCHHHHHHHCSS
T ss_pred HHHHHHHHHHH----------HHHHcCcccccHHHHHHHcCCchHHHHHHcCC
Confidence 34677888877 33344566899999999999999999998865
No 197
>3dpj_A Transcription regulator, TETR family; APC88616, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MES; 1.90A {Silicibacter pomeroyi}
Probab=83.15 E-value=1.2 Score=32.60 Aligned_cols=43 Identities=12% Similarity=0.051 Sum_probs=34.5
Q ss_pred hHHHHHHHHHHhCCCCCCchHHHHhhCCCCCCHHHHHHHhhhhhhhhhcccCC
Q 027234 160 LHQQFVSAVKELGFDKAGPKKILELMNIPGLTRENVASHLQKHRLYLSRLSGV 212 (226)
Q Consensus 160 l~~~Fi~~~~~~g~~~~~p~~I~~~~~~~~lt~~~va~~l~~~r~~l~r~~~~ 212 (226)
-.++++.++.. ++..-.-.++|+++||.+.|+|+..+|+-|+.
T Consensus 9 ~r~~Il~aA~~----------l~~~~G~~~~t~~~IA~~Agvs~~tly~~F~s 51 (194)
T 3dpj_A 9 TRDQIVAAADE----------LFYRQGFAQTSFVDISAAVGISRGNFYYHFKT 51 (194)
T ss_dssp HHHHHHHHHHH----------HHHHHCTTTCCHHHHHHHHTCCHHHHHHHCSS
T ss_pred HHHHHHHHHHH----------HHHHcCcccCCHHHHHHHHCCChHHHHHHcCC
Confidence 35677778777 44445667999999999999999999998864
No 198
>3s5r_A Transcriptional regulator TETR family; DNA/RNA-binding 3-helical bundle, tetracyclin repressor-like structural genomics; 2.60A {Syntrophus aciditrophicus}
Probab=82.99 E-value=1 Score=33.51 Aligned_cols=43 Identities=9% Similarity=0.111 Sum_probs=34.6
Q ss_pred hHHHHHHHHHHhCCCCCCchHHHHhhCCCCCCHHHHHHHhhhhhhhhhcccCC
Q 027234 160 LHQQFVSAVKELGFDKAGPKKILELMNIPGLTRENVASHLQKHRLYLSRLSGV 212 (226)
Q Consensus 160 l~~~Fi~~~~~~g~~~~~p~~I~~~~~~~~lt~~~va~~l~~~r~~l~r~~~~ 212 (226)
..++++.++.+ ++..-.-.++|+++||.+.++||..+|+-|+.
T Consensus 11 ~r~~Il~aa~~----------l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~F~s 53 (216)
T 3s5r_A 11 TRELLLDAATT----------LFAEQGIAATTMAEIAASVGVNPAMIHYYFKT 53 (216)
T ss_dssp HHHHHHHHHHH----------HHHHHCTTTCCHHHHHHTTTCCHHHHHHHCSS
T ss_pred HHHHHHHHHHH----------HHHHcCcccCCHHHHHHHHCCCHHHHHHHcCC
Confidence 35677788777 44445667899999999999999999998864
No 199
>3fiw_A Putative TETR-family transcriptional regulator; TETR-family transcriptional regulator streptomyces, structur genomics, PSI-2; 2.20A {Streptomyces coelicolor}
Probab=82.99 E-value=0.92 Score=34.44 Aligned_cols=42 Identities=12% Similarity=0.236 Sum_probs=34.1
Q ss_pred HHHHHHHHHHhCCCCCCchHHHHhhCCCCCCHHHHHHHhhhhhhhhhcccCC
Q 027234 161 HQQFVSAVKELGFDKAGPKKILELMNIPGLTRENVASHLQKHRLYLSRLSGV 212 (226)
Q Consensus 161 ~~~Fi~~~~~~g~~~~~p~~I~~~~~~~~lt~~~va~~l~~~r~~l~r~~~~ 212 (226)
.++++.++.+ ++..-...++|++.||.++++++..+|+-|+.
T Consensus 27 r~~Il~aA~~----------l~~~~G~~~~s~~~IA~~aGvs~~tlY~~F~~ 68 (211)
T 3fiw_A 27 RETVITEALD----------LLDEVGLDGVSTRRLAKRLGVEQPSLYWYFRT 68 (211)
T ss_dssp HHHHHHHHHH----------HHHHHCGGGCCHHHHHHHHTSCTHHHHTTCSS
T ss_pred HHHHHHHHHH----------HHHhcCcccCCHHHHHHHhCCChhHHHHHcCC
Confidence 5677888877 44444566899999999999999999998864
No 200
>3g7r_A Putative transcriptional regulator; TETR, all-helical, structural genomics, PSI-2, protein structure initiative; 1.38A {Streptomyces coelicolor A3}
Probab=82.95 E-value=1.2 Score=33.68 Aligned_cols=44 Identities=16% Similarity=0.156 Sum_probs=35.8
Q ss_pred hhHHHHHHHHHHhCCCCCCchHHHHhhCCCCCCHHHHHHHhhhhhhhhhcccCC
Q 027234 159 ELHQQFVSAVKELGFDKAGPKKILELMNIPGLTRENVASHLQKHRLYLSRLSGV 212 (226)
Q Consensus 159 ~l~~~Fi~~~~~~g~~~~~p~~I~~~~~~~~lt~~~va~~l~~~r~~l~r~~~~ 212 (226)
.-.++++.++.+ ++..-.-.+.|+++||.+.|+|+..+|+-|+.
T Consensus 35 ~~r~~Il~aA~~----------lf~~~G~~~~t~~~IA~~AGvs~~tlY~~F~s 78 (221)
T 3g7r_A 35 EARARLLGTATR----------IFYAEGIHSVGIDRITAEAQVTRATLYRHFSG 78 (221)
T ss_dssp HHHHHHHHHHHH----------HHHHHCSTTSCHHHHHHHHTCCHHHHHHHCSS
T ss_pred hHHHHHHHHHHH----------HHHHhCcccCCHHHHHHHhCCCHHHHHHHCCC
Confidence 446788888888 44445667899999999999999999998874
No 201
>3f0c_A TETR-molecule A, transcriptional regulator; MCSG,PSI, SAD, structural genomics, protein structure initiative; 2.96A {Cytophaga hutchinsonii}
Probab=82.80 E-value=1.2 Score=33.20 Aligned_cols=43 Identities=12% Similarity=0.024 Sum_probs=34.2
Q ss_pred hHHHHHHHHHHhCCCCCCchHHHHhhCCCCCCHHHHHHHhhhhhhhhhcccCC
Q 027234 160 LHQQFVSAVKELGFDKAGPKKILELMNIPGLTRENVASHLQKHRLYLSRLSGV 212 (226)
Q Consensus 160 l~~~Fi~~~~~~g~~~~~p~~I~~~~~~~~lt~~~va~~l~~~r~~l~r~~~~ 212 (226)
..++++.++.+ ++..-.-.+.|+++||.+.|+|+..+|+-|+.
T Consensus 12 ~r~~Il~aA~~----------lf~~~G~~~~ti~~Ia~~agvs~~t~Y~~F~s 54 (216)
T 3f0c_A 12 KLELIINAAQK----------RFAHYGLCKTTMNEIASDVGMGKASLYYYFPD 54 (216)
T ss_dssp HHHHHHHHHHH----------HHHHHCSSSCCHHHHHHHHTCCHHHHHHHCSS
T ss_pred HHHHHHHHHHH----------HHHHcCCCcCCHHHHHHHhCCCHHHHHHHcCC
Confidence 35677778777 33444566899999999999999999998864
No 202
>1umq_A Photosynthetic apparatus regulatory protein; DNA-binding protein, response regulator, DNA binding domain, helix-turn-helix; NMR {Rhodobacter sphaeroides} SCOP: a.4.1.12
Probab=82.70 E-value=0.41 Score=30.98 Aligned_cols=29 Identities=24% Similarity=0.319 Sum_probs=22.9
Q ss_pred HHHhhCCCCCCHHHHHHHhhhhhhhhhcc
Q 027234 181 ILELMNIPGLTRENVASHLQKHRLYLSRL 209 (226)
Q Consensus 181 I~~~~~~~~lt~~~va~~l~~~r~~l~r~ 209 (226)
|.+.+...+-++...|..|+++|..|||.
T Consensus 46 I~~aL~~~~GN~s~AA~~LGISR~TLyrK 74 (81)
T 1umq_A 46 IQRIYEMCDRNVSETARRLNMHRRTLQRI 74 (81)
T ss_dssp HHHHHHHTTSCHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHhCCCHHHHHHH
Confidence 44444455778999999999999999974
No 203
>3rh2_A Hypothetical TETR-like transcriptional regulator; DNA/RNA-binding 3-helical bundle, structural genomics, joint for structural genomics; 2.42A {Shewanella amazonensis}
Probab=82.68 E-value=0.84 Score=34.05 Aligned_cols=42 Identities=17% Similarity=0.126 Sum_probs=32.8
Q ss_pred HHHHHHHHHHhCCCCCCchHHHHhhCCCCCCHHHHHHHhhhhhhhhhcccCC
Q 027234 161 HQQFVSAVKELGFDKAGPKKILELMNIPGLTRENVASHLQKHRLYLSRLSGV 212 (226)
Q Consensus 161 ~~~Fi~~~~~~g~~~~~p~~I~~~~~~~~lt~~~va~~l~~~r~~l~r~~~~ 212 (226)
.++++.++.+ +...-.-.++|+++||.+.|+||..+|+-|+.
T Consensus 5 r~~Il~aA~~----------lf~~~G~~~~s~~~IA~~Agvs~~t~Y~~F~s 46 (212)
T 3rh2_A 5 RDKIIQASLE----------LFNEHGERTITTNHIAAHLDISPGNLYYHFRN 46 (212)
T ss_dssp HHHHHHHHHH----------HHHHHCGGGCCHHHHHHHHTCCHHHHHHHCSS
T ss_pred HHHHHHHHHH----------HHHHcCcccCCHHHHHHHhCCCHHHHHHHCCC
Confidence 3466677776 33444566899999999999999999998864
No 204
>1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A
Probab=82.68 E-value=15 Score=28.38 Aligned_cols=78 Identities=14% Similarity=0.176 Sum_probs=52.4
Q ss_pred HHHHHHHHHhCCCCceE-EEEccCCCC-CC--HHHHHHHHhcCCCCcEEEEeccCCHHHHHHHHhCCcceEEe------C
Q 027234 11 AEIALDMLRTNKNGYDI-VISDVHMPD-MD--GFKLLELVGLEMDLPVIMMCAHGSKEVVMKGVTHDACDYLT------K 80 (226)
Q Consensus 11 ~~eal~~l~~~~~~~Dl-Vl~D~~mp~-~d--G~~l~~~l~~~~~~pvI~ls~~~~~~~~~~a~~~ga~~yl~------K 80 (226)
..+..+.+.... ++. ++++..-.+ .. .+++++.++...++|||.-.+-.+.+.+.++++.|+++.+. .
T Consensus 153 ~~e~~~~~~~~G--~~~i~~~~~~~~g~~~g~~~~~~~~l~~~~~ipvia~GGI~~~~d~~~~~~~Gadgv~vGsal~~~ 230 (253)
T 1thf_D 153 LRDWVVEVEKRG--AGEILLTSIDRDGTKSGYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLAGADAALAASVFHFR 230 (253)
T ss_dssp HHHHHHHHHHTT--CSEEEEEETTTTTSCSCCCHHHHHHHGGGCCSCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHTT
T ss_pred HHHHHHHHHHCC--CCEEEEEeccCCCCCCCCCHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCChHHHHHHHHHcC
Confidence 445555555533 674 445554222 12 37888888866789999888888889999999999999874 3
Q ss_pred CCCHHHHHHH
Q 027234 81 PVRIEELKNI 90 (226)
Q Consensus 81 P~~~~~L~~~ 90 (226)
|+++.++...
T Consensus 231 ~~~~~~~~~~ 240 (253)
T 1thf_D 231 EIDVRELKEY 240 (253)
T ss_dssp CSCHHHHHHH
T ss_pred CCCHHHHHHH
Confidence 5565555444
No 205
>1rkt_A Protein YFIR; transcription regulator, structural genomics, PSI, protein S initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=82.61 E-value=1.5 Score=32.55 Aligned_cols=42 Identities=12% Similarity=0.014 Sum_probs=34.0
Q ss_pred HHHHHHHHHHhCCCCCCchHHHHhhCCCCCCHHHHHHHhhhhhhhhhcccCC
Q 027234 161 HQQFVSAVKELGFDKAGPKKILELMNIPGLTRENVASHLQKHRLYLSRLSGV 212 (226)
Q Consensus 161 ~~~Fi~~~~~~g~~~~~p~~I~~~~~~~~lt~~~va~~l~~~r~~l~r~~~~ 212 (226)
.++++.++.+ +...-.-.+.|+++||.+.|+|+..+|+-|+.
T Consensus 14 r~~Il~aA~~----------lf~~~Gy~~ts~~~IA~~agvs~gtlY~yF~s 55 (205)
T 1rkt_A 14 QAEILEAAKT----------VFKRKGFELTTMKDVVEESGFSRGGVYLYFSS 55 (205)
T ss_dssp HHHHHHHHHH----------HHHHHCSTTCCHHHHHHHHTSCHHHHHTTCSC
T ss_pred HHHHHHHHHH----------HHHHcCcccCCHHHHHHHHCCCcchhhhhCCC
Confidence 4577888887 33444667899999999999999999998874
No 206
>2d6y_A Putative TETR family regulatory protein; helix-turn-helix, gene regulation; HET: TLA; 2.30A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=82.47 E-value=1.1 Score=33.36 Aligned_cols=42 Identities=12% Similarity=0.179 Sum_probs=33.6
Q ss_pred HHHHHHHHHHhCCCCCCchHHHHhhCCCCCCHHHHHHHhhhhhhhhhcccCC
Q 027234 161 HQQFVSAVKELGFDKAGPKKILELMNIPGLTRENVASHLQKHRLYLSRLSGV 212 (226)
Q Consensus 161 ~~~Fi~~~~~~g~~~~~p~~I~~~~~~~~lt~~~va~~l~~~r~~l~r~~~~ 212 (226)
.++++.++.+ +...-.-.+.|+++||.+.|+|+..+|+-|+.
T Consensus 10 r~~Il~aA~~----------lf~~~G~~~~s~~~IA~~aGvs~~tiY~~F~s 51 (202)
T 2d6y_A 10 KARIFEAAVA----------EFARHGIAGARIDRIAAEARANKQLIYAYYGN 51 (202)
T ss_dssp HHHHHHHHHH----------HHHHHTTTSCCHHHHHHHHTCCHHHHHHHHSS
T ss_pred HHHHHHHHHH----------HHHHcCcccCCHHHHHHHhCCCHHHHHHHcCC
Confidence 4677788877 33444566899999999999999999998764
No 207
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=82.40 E-value=0.57 Score=29.92 Aligned_cols=32 Identities=25% Similarity=0.188 Sum_probs=26.6
Q ss_pred HHHHhhCCCCCCHHHHHHHhhhhhhhhhcccC
Q 027234 180 KILELMNIPGLTRENVASHLQKHRLYLSRLSG 211 (226)
Q Consensus 180 ~I~~~~~~~~lt~~~va~~l~~~r~~l~r~~~ 211 (226)
.|.+.+..-++|..++|..+++++++++++.+
T Consensus 22 ~l~~~r~~~glsq~elA~~~gis~~~is~~e~ 53 (83)
T 2a6c_A 22 VLQEHLRNSGLTQFKAAELLGVTQPRVSDLMR 53 (83)
T ss_dssp HHHHHHHTTTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 35666667799999999999999999998643
No 208
>2dg8_A Putative TETR-family transcriptional regulatory P; helix-turn-helix motif, gene regulation; 2.21A {Streptomyces coelicolor}
Probab=82.38 E-value=0.88 Score=33.48 Aligned_cols=43 Identities=7% Similarity=0.032 Sum_probs=33.5
Q ss_pred hHHHHHHHHHHhCCCCCCchHHHHhhCCCCCCHHHHHHHhhhhhhhhhcccCC
Q 027234 160 LHQQFVSAVKELGFDKAGPKKILELMNIPGLTRENVASHLQKHRLYLSRLSGV 212 (226)
Q Consensus 160 l~~~Fi~~~~~~g~~~~~p~~I~~~~~~~~lt~~~va~~l~~~r~~l~r~~~~ 212 (226)
..++++.++.+ ++..-...++|+++||.+.|+||..||+-|+.
T Consensus 10 ~r~~Il~aa~~----------l~~~~G~~~~ti~~IA~~agvs~~t~Y~~F~s 52 (193)
T 2dg8_A 10 RRERILAATLD----------LIAEEGIARVSHRRIAQRAGVPLGSMTYHFTG 52 (193)
T ss_dssp HHHHHHHHHHH----------HHHHHCGGGCCHHHHHHHHTSCTHHHHHHCSS
T ss_pred HHHHHHHHHHH----------HHHHhChhhccHHHHHHHhCCCchhhheeCCC
Confidence 34567777777 33444566899999999999999999998864
No 209
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=82.20 E-value=0.43 Score=28.89 Aligned_cols=31 Identities=13% Similarity=0.180 Sum_probs=24.6
Q ss_pred HHHhhCCCCCCHHHHHHHhhhhhhhhhcccC
Q 027234 181 ILELMNIPGLTRENVASHLQKHRLYLSRLSG 211 (226)
Q Consensus 181 I~~~~~~~~lt~~~va~~l~~~r~~l~r~~~ 211 (226)
|.+.+..-++|..++|..+++++++++++-.
T Consensus 6 l~~~r~~~glsq~~lA~~~gis~~~i~~~e~ 36 (69)
T 1r69_A 6 VKSKRIQLGLNQAELAQKVGTTQQSIEQLEN 36 (69)
T ss_dssp HHHHHHHTTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHHHHHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 4445555689999999999999999988643
No 210
>2xdn_A HTH-type transcriptional regulator TTGR; transcription regulation, TETR family; 2.20A {Pseudomonas putida} PDB: 2uxu_A* 2uxi_A* 2uxo_A* 2uxp_A* 2uxh_A*
Probab=82.15 E-value=1.3 Score=33.05 Aligned_cols=43 Identities=12% Similarity=-0.002 Sum_probs=34.4
Q ss_pred hHHHHHHHHHHhCCCCCCchHHHHhhCCCCCCHHHHHHHhhhhhhhhhcccCC
Q 027234 160 LHQQFVSAVKELGFDKAGPKKILELMNIPGLTRENVASHLQKHRLYLSRLSGV 212 (226)
Q Consensus 160 l~~~Fi~~~~~~g~~~~~p~~I~~~~~~~~lt~~~va~~l~~~r~~l~r~~~~ 212 (226)
-.++++.++.+ +...-.-.+.|+++||.+.|+|+..+|+-|+.
T Consensus 12 ~r~~Il~aA~~----------lf~~~G~~~~s~~~IA~~aGvskgtlY~~F~s 54 (210)
T 2xdn_A 12 TRAQIIEAAER----------AFYKRGVARTTLADIAELAGVTRGAIYWHFNN 54 (210)
T ss_dssp HHHHHHHHHHH----------HHHHHCSTTCCHHHHHHHHTCCTTHHHHHCSS
T ss_pred HHHHHHHHHHH----------HHHHcCcccCcHHHHHHHHCCChHHHHHHhCC
Confidence 34678888888 33444666899999999999999999998864
No 211
>2w53_A Repressor, SMet; antibiotic resistance, multi-drug efflux pump, transcription regulation, transcriptional repressor, DNA binding; 2.00A {Stenotrophomonas maltophilia} PDB: 3p9t_A*
Probab=82.12 E-value=1.5 Score=32.78 Aligned_cols=42 Identities=10% Similarity=-0.015 Sum_probs=33.9
Q ss_pred HHHHHHHHHHhCCCCCCchHHHHhhCCCCCCHHHHHHHhhhhhhhhhcccCC
Q 027234 161 HQQFVSAVKELGFDKAGPKKILELMNIPGLTRENVASHLQKHRLYLSRLSGV 212 (226)
Q Consensus 161 ~~~Fi~~~~~~g~~~~~p~~I~~~~~~~~lt~~~va~~l~~~r~~l~r~~~~ 212 (226)
.++++.++.+ +...-.-.+.|+++||...|+||..+|+-|+.
T Consensus 13 r~~Il~aA~~----------lf~~~G~~~~s~~~IA~~aGvskgtlY~~F~s 54 (219)
T 2w53_A 13 REGILDAAEA----------CFHEHGVARTTLEMIGARAGYTRGAVYWHFKN 54 (219)
T ss_dssp HHHHHHHHHH----------HHHHHCTTTCCHHHHHHHHTSCHHHHHTTCSS
T ss_pred HHHHHHHHHH----------HHHHhCcccCCHHHHHHHhCCCchHHhhcCCC
Confidence 4677888887 33444566899999999999999999998864
No 212
>2qwt_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative; 2.30A {Mycobacterium vanbaalenii pyr-1}
Probab=82.09 E-value=1.3 Score=32.79 Aligned_cols=41 Identities=7% Similarity=0.070 Sum_probs=33.0
Q ss_pred HHHHHHHHHHhCCCCCCchHHHHhhCCCCCCHHHHHHHhhhhhhhhhcccCC
Q 027234 161 HQQFVSAVKELGFDKAGPKKILELMNIPGLTRENVASHLQKHRLYLSRLSGV 212 (226)
Q Consensus 161 ~~~Fi~~~~~~g~~~~~p~~I~~~~~~~~lt~~~va~~l~~~r~~l~r~~~~ 212 (226)
.++++.++.+ .+.+ -.. +.|+++||.+.|+|+..+|+-|+.
T Consensus 15 r~~Il~aA~~---------lf~~-~G~-~~t~~~IA~~agvs~~tlY~~F~s 55 (196)
T 2qwt_A 15 RARVLEVAYD---------TFAA-EGL-GVPMDEIARRAGVGAGTVYRHFPT 55 (196)
T ss_dssp HHHHHHHHHH---------HHHH-TCT-TSCHHHHHHHTTSCHHHHHHHCSS
T ss_pred HHHHHHHHHH---------HHHh-cCC-CCCHHHHHHHhCCCHHHHHHHCCC
Confidence 4678888888 2444 345 799999999999999999998864
No 213
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=82.07 E-value=0.42 Score=30.27 Aligned_cols=32 Identities=19% Similarity=0.270 Sum_probs=25.5
Q ss_pred HHHHhhCCCCCCHHHHHHHhhhhhhhhhcccC
Q 027234 180 KILELMNIPGLTRENVASHLQKHRLYLSRLSG 211 (226)
Q Consensus 180 ~I~~~~~~~~lt~~~va~~l~~~r~~l~r~~~ 211 (226)
.|.+....-++|+.++|..+++++++++++-.
T Consensus 14 ~ik~~R~~~gltq~elA~~~gis~~~is~~E~ 45 (78)
T 3qq6_A 14 RIKQYRKEKGYSLSELAEKAGVAKSYLSSIER 45 (78)
T ss_dssp HHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 34444555699999999999999999998743
No 214
>3geu_A Intercellular adhesion protein R; TETR family, intercellular adhesion regulator, IDP00851, DNA repressor, transcription; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=82.01 E-value=0.58 Score=34.20 Aligned_cols=42 Identities=10% Similarity=0.131 Sum_probs=32.7
Q ss_pred HHHHHHHHHHhCCCCCCchHHHHhhCCCCCCHHHHHHHhhhhhhhhhcccCC
Q 027234 161 HQQFVSAVKELGFDKAGPKKILELMNIPGLTRENVASHLQKHRLYLSRLSGV 212 (226)
Q Consensus 161 ~~~Fi~~~~~~g~~~~~p~~I~~~~~~~~lt~~~va~~l~~~r~~l~r~~~~ 212 (226)
.++++.++.+ ++..-.-.++|+++||.+.|+||..+|+-|+.
T Consensus 5 r~~Il~aa~~----------l~~~~G~~~~ti~~IA~~agvs~~t~Y~~F~s 46 (189)
T 3geu_A 5 KDKIIDNAIT----------LFSEKGYDGTTLDDIAKSVNIKKASLYYHFDS 46 (189)
T ss_dssp HHHHHHHHHH----------HHHHHHHHHCCHHHHHHHTTCCHHHHTTTCSS
T ss_pred HHHHHHHHHH----------HHHHcCcccCCHHHHHHHhCCCHHHHHHHhCC
Confidence 4567777777 33333455799999999999999999998874
No 215
>2zb9_A Putative transcriptional regulator; transcription regulator, TETR family, helix-turn-helix, DNA- binding, transcription regulation; 2.25A {Streptomyces coelicolor}
Probab=81.88 E-value=0.87 Score=34.02 Aligned_cols=44 Identities=25% Similarity=0.160 Sum_probs=34.8
Q ss_pred hhHHHHHHHHHHhCCCCCCchHHHHhhCCCCCCHHHHHHHhhhhhhhhhcccCC
Q 027234 159 ELHQQFVSAVKELGFDKAGPKKILELMNIPGLTRENVASHLQKHRLYLSRLSGV 212 (226)
Q Consensus 159 ~l~~~Fi~~~~~~g~~~~~p~~I~~~~~~~~lt~~~va~~l~~~r~~l~r~~~~ 212 (226)
...++++.++.+ ++..-.-.++|+++||.+.|+|+..||+-|+.
T Consensus 23 ~~r~~Il~aA~~----------lf~~~G~~~~t~~~IA~~agvs~~t~Y~~F~s 66 (214)
T 2zb9_A 23 EVRAEVLHAVGE----------LLLTEGTAQLTFERVARVSGVSKTTLYKWWPS 66 (214)
T ss_dssp HHHHHHHHHHHH----------HHHHHCGGGCCHHHHHHHHCCCHHHHHHHCSS
T ss_pred HHHHHHHHHHHH----------HHHHhCcccCCHHHHHHHHCCCHHHHHHHCCC
Confidence 345678888877 44445556899999999999999999998864
No 216
>2hku_A A putative transcriptional regulator; structural genomics, APC6040, TET rhodococcus SP. RHA1, PSI-2, protein structure initiative; HET: PG4; 2.00A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=81.84 E-value=1.2 Score=33.40 Aligned_cols=43 Identities=16% Similarity=0.236 Sum_probs=35.0
Q ss_pred hhHHHHHHHHHHhCCCCCCchHHHHhhCCCCCCHHHHHHHhhhhhhhhhcccCC
Q 027234 159 ELHQQFVSAVKELGFDKAGPKKILELMNIPGLTRENVASHLQKHRLYLSRLSGV 212 (226)
Q Consensus 159 ~l~~~Fi~~~~~~g~~~~~p~~I~~~~~~~~lt~~~va~~l~~~r~~l~r~~~~ 212 (226)
...++++.++.+ .+.+ -. .+.|+++||.+.++|+..+|+-|+.
T Consensus 20 ~~r~~Il~aA~~---------lf~~-~G-~~~s~~~IA~~aGvs~~tlY~~F~s 62 (215)
T 2hku_A 20 QTRDALFTAATE---------LFLE-HG-EGVPITQICAAAGAHPNQVTYYYGS 62 (215)
T ss_dssp CHHHHHHHHHHH---------HHHH-HC-TTSCHHHHHHHHTCCHHHHHHHHSS
T ss_pred HHHHHHHHHHHH---------HHHH-hC-CCcCHHHHHHHhCCCHHHHHHHcCC
Confidence 346788888888 2444 45 7999999999999999999998764
No 217
>2g7l_A TETR-family transcriptional regulator; APC6062, protein structure initiativ midwest center for structural genomics, MCSG; 2.10A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=81.67 E-value=1.5 Score=34.11 Aligned_cols=42 Identities=12% Similarity=0.104 Sum_probs=34.5
Q ss_pred HHHHHHHHHHhCCCCCCchHHHHhhCCCCCCHHHHHHHhhhhhhhhhcccCC
Q 027234 161 HQQFVSAVKELGFDKAGPKKILELMNIPGLTRENVASHLQKHRLYLSRLSGV 212 (226)
Q Consensus 161 ~~~Fi~~~~~~g~~~~~p~~I~~~~~~~~lt~~~va~~l~~~r~~l~r~~~~ 212 (226)
.++++.++.. ++..-...++|+..||.++++++..||+-|+.
T Consensus 21 r~~Il~AA~~----------l~~e~G~~~~S~~~IA~~aGvs~~tlY~hF~s 62 (243)
T 2g7l_A 21 RRWIVDTAVA----------LMRAEGLEKVTMRRLAQELDTGPASLYVYVAN 62 (243)
T ss_dssp HHHHHHHHHH----------HHHHHCSSSCCHHHHHHHTTSCHHHHTTTCCS
T ss_pred HHHHHHHHHH----------HHHhcCchhcCHHHHHHHHCCChhHHHHHcCC
Confidence 5677777777 44555667899999999999999999998874
No 218
>3kts_A Glycerol uptake operon antiterminator regulatory; structural genomics, PSI-2, protein structur initiative; HET: UNL; 2.75A {Listeria monocytogenes str}
Probab=81.66 E-value=2.7 Score=31.80 Aligned_cols=62 Identities=15% Similarity=0.186 Sum_probs=48.5
Q ss_pred HHHHHHHHhCCCCceEEEEccCCCCCCHHHHHHHHhcCCCCcEEEEeccCCHHHHHHHHhCCcceEEe
Q 027234 12 EIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVGLEMDLPVIMMCAHGSKEVVMKGVTHDACDYLT 79 (226)
Q Consensus 12 ~eal~~l~~~~~~~DlVl~D~~mp~~dG~~l~~~l~~~~~~pvI~ls~~~~~~~~~~a~~~ga~~yl~ 79 (226)
+.+++.+.+.. ||+| -.||+.-- ++++.+++..++|+|.=-.-.+.+.+..|+++||+..-+
T Consensus 117 ~~~~~~i~~~~--PD~i---EiLPGi~p-~iI~~i~~~~~~PiIaGGlI~~~edv~~al~aGA~aVsT 178 (192)
T 3kts_A 117 NKGVALIQKVQ--PDCI---ELLPGIIP-EQVQKMTQKLHIPVIAGGLIETSEQVNQVIASGAIAVTT 178 (192)
T ss_dssp HHHHHHHHHHC--CSEE---EEECTTCH-HHHHHHHHHHCCCEEEESSCCSHHHHHHHHTTTEEEEEE
T ss_pred HHHHHHHhhcC--CCEE---EECCchhH-HHHHHHHHhcCCCEEEECCcCCHHHHHHHHHcCCeEEEe
Confidence 45778888876 9987 34587543 688888877789998766677889999999999997654
No 219
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=81.61 E-value=0.84 Score=29.82 Aligned_cols=32 Identities=6% Similarity=0.027 Sum_probs=25.4
Q ss_pred HHHHhhCCCCCCHHHHHHHhhhhhhhhhcccC
Q 027234 180 KILELMNIPGLTRENVASHLQKHRLYLSRLSG 211 (226)
Q Consensus 180 ~I~~~~~~~~lt~~~va~~l~~~r~~l~r~~~ 211 (226)
.|.+.+..-++|..++|..+++++++++++..
T Consensus 13 ~lk~~r~~~glsq~~lA~~~gis~~~is~~e~ 44 (94)
T 2kpj_A 13 NLNSYIAKSEKTQLEIAKSIGVSPQTFNTWCK 44 (94)
T ss_dssp HHHHHHTTSSSCHHHHHHHHTCCHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHh
Confidence 35666677789999999999999998887643
No 220
>3kp1_A D-ornithine aminomutase E component; 5 aminomutase (OAM), metal binding protein; HET: PLP B12 5AD; 2.01A {Clostridium sticklandii} PDB: 3kow_A* 3koy_A* 3koz_A* 3kp0_A* 3kox_A*
Probab=81.59 E-value=13 Score=33.55 Aligned_cols=91 Identities=14% Similarity=0.103 Sum_probs=60.8
Q ss_pred CcEEEE---ECCHHHHHHHHHhCCCCceEEEEccCCCC----CCHHH-HHHHHhcC-C--CCcEEEEeccCCHHHHHHHH
Q 027234 2 GFSVTK---CNRAEIALDMLRTNKNGYDIVISDVHMPD----MDGFK-LLELVGLE-M--DLPVIMMCAHGSKEVVMKGV 70 (226)
Q Consensus 2 g~~V~~---~~~~~eal~~l~~~~~~~DlVl~D~~mp~----~dG~~-l~~~l~~~-~--~~pvI~ls~~~~~~~~~~a~ 70 (226)
||+|.. .-..++.++.+.+.. +|+|.+...|.. +..+. +++.+++. . .++|++=-.....+. +.
T Consensus 634 GFEVIDLGvdVPpEeIVeAA~Eed--ADVVGLSsLLTt~dihL~~MkevIelLrE~GlrDkIkVIVGGa~~tqd~---Ak 708 (763)
T 3kp1_A 634 GVEVHYLGTSVPVEKLVDAAIELK--ADAILASTIISHDDIHYKNMKRIHELAVEKGIRDKIMIGCGGTQVTPEV---AV 708 (763)
T ss_dssp TCEEEECCSSBCHHHHHHHHHHTT--CSEEEEECCCCGGGHHHHHHHHHHHHHHHTTCTTTSEEEEECTTCCHHH---HH
T ss_pred CCEEEECCCCCCHHHHHHHHHHcC--CCEEEEeccccCchhhHHHHHHHHHHHHhcCCCCCCEEEEECCCCCHHH---HH
Confidence 788863 347889999999877 999999988876 34433 44555532 2 245544222333333 35
Q ss_pred hCCcceEEeCCCCHHHHHHHHHHHHHH
Q 027234 71 THDACDYLTKPVRIEELKNIWQHVVRK 97 (226)
Q Consensus 71 ~~ga~~yl~KP~~~~~L~~~l~~~~~~ 97 (226)
..||+.|..-.....++...|...+..
T Consensus 709 eIGADa~f~DATeAVeVA~~Ll~~l~e 735 (763)
T 3kp1_A 709 KQGVDAGFGRGSKGIHVATFLVKKRRE 735 (763)
T ss_dssp TTTCSEEECTTCCHHHHHHHHHHHHHH
T ss_pred HcCCcEEECCcchHHHHHHHHHHHHHH
Confidence 899999999888888777776665544
No 221
>2f07_A YVDT; helix-turn-helix, transcription; HET: BTB; 2.30A {Bacillus subtilis subsp}
Probab=81.57 E-value=1.5 Score=32.44 Aligned_cols=43 Identities=5% Similarity=0.021 Sum_probs=34.1
Q ss_pred HHHHHHHHHHhCCCCCCchHHHHhhCCCCCCHHHHHHHhhhhhhhhhcccCCC
Q 027234 161 HQQFVSAVKELGFDKAGPKKILELMNIPGLTRENVASHLQKHRLYLSRLSGVS 213 (226)
Q Consensus 161 ~~~Fi~~~~~~g~~~~~p~~I~~~~~~~~lt~~~va~~l~~~r~~l~r~~~~~ 213 (226)
.++++.++.+ +...-.-.+.|+++||.+.|+||..+|+-|+.-
T Consensus 12 r~~Il~aA~~----------lf~~~G~~~~s~~~Ia~~Agvskgt~Y~yF~sK 54 (197)
T 2f07_A 12 YEKILQAAIE----------VISEKGLDKASISDIVKKAGTAQGTFYLYFSSK 54 (197)
T ss_dssp HHHHHHHHHH----------HHHHHCTTTCCHHHHHHHHTSCHHHHHHHCSSS
T ss_pred HHHHHHHHHH----------HHHHhCcccCCHHHHHHHhCCCchHHHHhCCCH
Confidence 4567777777 444455668999999999999999999988753
No 222
>2of7_A Putative TETR-family transcriptional regulator; APC7240, streptomyces coelicolor A3, structural genomics, PSI-2; 2.30A {Streptomyces coelicolor}
Probab=81.56 E-value=1.4 Score=34.37 Aligned_cols=44 Identities=11% Similarity=0.058 Sum_probs=35.2
Q ss_pred hhHHHHHHHHHHhCCCCCCchHHHHhhCCCCCCHHHHHHHhhhhhhhhhcccCC
Q 027234 159 ELHQQFVSAVKELGFDKAGPKKILELMNIPGLTRENVASHLQKHRLYLSRLSGV 212 (226)
Q Consensus 159 ~l~~~Fi~~~~~~g~~~~~p~~I~~~~~~~~lt~~~va~~l~~~r~~l~r~~~~ 212 (226)
...++++.++.+ ++..-...++|+++||...++|+..||+-|+.
T Consensus 48 ~tr~~Il~AA~~----------lf~e~G~~~~Ti~~IA~~AGvs~~t~Y~yF~s 91 (260)
T 2of7_A 48 RTREAIRAATYG----------LIRQQGYEATTVEQIAERAEVSPSTVLRYFPT 91 (260)
T ss_dssp HHHHHHHHHHHH----------HHHHHCSTTCCHHHHHHHHTSCHHHHHHHCSS
T ss_pred HHHHHHHHHHHH----------HHHHhCcccccHHHHHHHhCCChHHHHHHcCC
Confidence 345678888887 44445677899999999999999999998864
No 223
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=81.53 E-value=0.47 Score=28.90 Aligned_cols=32 Identities=6% Similarity=0.071 Sum_probs=25.3
Q ss_pred HHHHhhCCCCCCHHHHHHHhhhhhhhhhcccC
Q 027234 180 KILELMNIPGLTRENVASHLQKHRLYLSRLSG 211 (226)
Q Consensus 180 ~I~~~~~~~~lt~~~va~~l~~~r~~l~r~~~ 211 (226)
.|.+.+..-++|..++|..+++++++++++..
T Consensus 7 ~l~~~r~~~glsq~~lA~~~gis~~~i~~~e~ 38 (71)
T 1zug_A 7 RLKKRRIALKMTQTELATKAGVKQQSIQLIEA 38 (71)
T ss_dssp HHHHHHHHTTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHc
Confidence 34455555689999999999999999998644
No 224
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=81.50 E-value=0.33 Score=31.98 Aligned_cols=30 Identities=10% Similarity=-0.038 Sum_probs=24.9
Q ss_pred HHHHhhCCCCCCHHHHHHHhhhhhhhhhcc
Q 027234 180 KILELMNIPGLTRENVASHLQKHRLYLSRL 209 (226)
Q Consensus 180 ~I~~~~~~~~lt~~~va~~l~~~r~~l~r~ 209 (226)
.|.+.+...+-++...|..||+||..|||.
T Consensus 55 ~i~~aL~~~~gn~~~aA~~LGIsr~tL~rk 84 (91)
T 1ntc_A 55 LLTTALRHTQGHKQEAARLLGWGAATLTAK 84 (91)
T ss_dssp HHHHHHHHTTTCTTHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHCcCHHHHHHH
Confidence 566666666778899999999999999974
No 225
>2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A*
Probab=81.49 E-value=12 Score=30.32 Aligned_cols=70 Identities=21% Similarity=0.236 Sum_probs=51.8
Q ss_pred EECCHHHHHHHHHhCCCCceEEEEccCCC----C---CCHHHHHHHHhcCCCCcEEEEeccCCHHHHHHHHhCCcceEEe
Q 027234 7 KCNRAEIALDMLRTNKNGYDIVISDVHMP----D---MDGFKLLELVGLEMDLPVIMMCAHGSKEVVMKGVTHDACDYLT 79 (226)
Q Consensus 7 ~~~~~~eal~~l~~~~~~~DlVl~D~~mp----~---~dG~~l~~~l~~~~~~pvI~ls~~~~~~~~~~a~~~ga~~yl~ 79 (226)
.+.+.+++...... ++|.|+++-.-+ + ...+++++.++...++|||+-.+-.+.+.+.+++..||++...
T Consensus 124 ~v~t~~~a~~~~~~---GaD~i~v~g~~~GG~~G~~~~~~~~~l~~v~~~~~iPviaaGGI~~~~~v~~al~~GAdgV~v 200 (328)
T 2gjl_A 124 KCTAVRHALKAERL---GVDAVSIDGFECAGHPGEDDIPGLVLLPAAANRLRVPIIASGGFADGRGLVAALALGADAINM 200 (328)
T ss_dssp EESSHHHHHHHHHT---TCSEEEEECTTCSBCCCSSCCCHHHHHHHHHTTCCSCEEEESSCCSHHHHHHHHHHTCSEEEE
T ss_pred eCCCHHHHHHHHHc---CCCEEEEECCCCCcCCCCccccHHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 46777887766553 379888853222 1 2567888888766789999888877888999999999998774
No 226
>3lsj_A DEST; transcriptional repressor, TETR family, DNA-binding, transcription, transcription regulation; HET: PLM COA; 2.30A {Pseudomonas aeruginosa} PDB: 3lsp_A* 3lsr_A*
Probab=81.49 E-value=0.93 Score=33.98 Aligned_cols=43 Identities=14% Similarity=0.063 Sum_probs=33.2
Q ss_pred hHHHHHHHHHHhCCCCCCchHHHH-hhCCCCCCHHHHHHHhhhhhhhhhcccCC
Q 027234 160 LHQQFVSAVKELGFDKAGPKKILE-LMNIPGLTRENVASHLQKHRLYLSRLSGV 212 (226)
Q Consensus 160 l~~~Fi~~~~~~g~~~~~p~~I~~-~~~~~~lt~~~va~~l~~~r~~l~r~~~~ 212 (226)
..++++.++.+ ++. .-.-.++|+++||.+.|+||..||+-|+.
T Consensus 12 ~r~~Il~aa~~----------l~~~~~G~~~~ti~~Ia~~Agvs~~t~Y~~F~s 55 (220)
T 3lsj_A 12 TRHALMSAARH----------LMESGRGFGSLSLREVTRAAGIVPAGFYRHFSD 55 (220)
T ss_dssp HHHHHHHHHHH----------HTTTSCCGGGCCHHHHHHHHTSCGGGGTTTCSS
T ss_pred HHHHHHHHHHH----------HHHhCCCcccCCHHHHHHHhCCChhHHHHHcCC
Confidence 34677777777 333 44455789999999999999999998874
No 227
>3nnr_A Transcriptional regulator, TETR family; TETR-family transcriptional regulator, structural genomics, center for structural genomics, JCSG; HET: MSE; 2.49A {Marinobacter aquaeolei}
Probab=81.45 E-value=0.98 Score=34.16 Aligned_cols=42 Identities=14% Similarity=0.080 Sum_probs=33.3
Q ss_pred HHHHHHHHHHhCCCCCCchHHHHhhCCCCCCHHHHHHHhhhhhhhhhcccCC
Q 027234 161 HQQFVSAVKELGFDKAGPKKILELMNIPGLTRENVASHLQKHRLYLSRLSGV 212 (226)
Q Consensus 161 ~~~Fi~~~~~~g~~~~~p~~I~~~~~~~~lt~~~va~~l~~~r~~l~r~~~~ 212 (226)
.++++.++.+ ++..-.-.++|+++||.+.|+||..||+-|+.
T Consensus 7 r~~Il~aA~~----------lf~~~G~~~~t~~~IA~~Agvs~~t~Y~~F~s 48 (228)
T 3nnr_A 7 RDKILLSSLE----------LFNDKGERNITTNHIAAHLAISPGNLYYHFRN 48 (228)
T ss_dssp HHHHHHHHHH----------HHHHHCGGGCCHHHHHHHHTCCHHHHHHHCSS
T ss_pred HHHHHHHHHH----------HHHHhChhhcCHHHHHHHhCCCCccchhcCCC
Confidence 4567777777 44444666899999999999999999998864
No 228
>2ibd_A Possible transcriptional regulator; probable transcriptional regulatory protein, rhodococcus SP. structural genomics, PSI-2; 1.50A {Rhodococcus SP}
Probab=81.44 E-value=1.4 Score=32.66 Aligned_cols=44 Identities=7% Similarity=-0.021 Sum_probs=35.0
Q ss_pred hhHHHHHHHHHHhCCCCCCchHHHHhhCCCCCCHHHHHHHhhhhhhhhhcccCC
Q 027234 159 ELHQQFVSAVKELGFDKAGPKKILELMNIPGLTRENVASHLQKHRLYLSRLSGV 212 (226)
Q Consensus 159 ~l~~~Fi~~~~~~g~~~~~p~~I~~~~~~~~lt~~~va~~l~~~r~~l~r~~~~ 212 (226)
...++++.++.+ +.....-.+.|+++||.+.|+||..+|+-|+.
T Consensus 14 ~~r~~Il~aA~~----------lf~~~G~~~~s~~~IA~~agvs~~tlY~~F~s 57 (204)
T 2ibd_A 14 GRRTELLDIAAT----------LFAERGLRATTVRDIADAAGILSGSLYHHFDS 57 (204)
T ss_dssp HHHHHHHHHHHH----------HHHHHCSTTCCHHHHHHHTTSCHHHHHHHCSC
T ss_pred hhHHHHHHHHHH----------HHHHcCchhcCHHHHHHHhCCCchhHHHhcCC
Confidence 345678888888 44445667899999999999999999998764
No 229
>1z0x_A Transcriptional regulator, TETR family; structural genomics, PSI, P structure initiative; 2.40A {Enterococcus faecalis} SCOP: a.4.1.9 a.121.1.1
Probab=81.39 E-value=1.2 Score=34.01 Aligned_cols=42 Identities=17% Similarity=0.141 Sum_probs=32.9
Q ss_pred HHHHHHHHHHhCCCCCCchHHHHhh-CCCCCCHHHHHHHhhhhhhhhhcccCC
Q 027234 161 HQQFVSAVKELGFDKAGPKKILELM-NIPGLTRENVASHLQKHRLYLSRLSGV 212 (226)
Q Consensus 161 ~~~Fi~~~~~~g~~~~~p~~I~~~~-~~~~lt~~~va~~l~~~r~~l~r~~~~ 212 (226)
.++++.++.. ++..- ...++|+..||.++++++..+|+-|+.
T Consensus 7 r~~Il~aA~~----------l~~~~~G~~~~s~~~IA~~aGvs~~tlY~~F~s 49 (220)
T 1z0x_A 7 KDTIIAAAFS----------LLEKSPTLEQLSMRKVAKQLGVQAPAIYWYFKN 49 (220)
T ss_dssp HHHHHHHHHH----------HHHHSCCGGGCCHHHHHHHHTSCHHHHHTTCSS
T ss_pred HHHHHHHHHH----------HHHhcCCcccCCHHHHHHHcCCCHHHHHHhcCC
Confidence 4566667666 44444 556899999999999999999998874
No 230
>2qib_A TETR-family transcriptional regulator; HTH DNA binding, STRU genomics, MCSG, PSI-2, protein structure initiative; HET: P6G; 1.70A {Streptomyces coelicolor A3}
Probab=81.35 E-value=0.99 Score=34.39 Aligned_cols=43 Identities=12% Similarity=0.081 Sum_probs=33.9
Q ss_pred hHHHHHHHHHHhCCCCCCchHHHHhhCCCCCCHHHHHHHhhhhhhhhhcccCC
Q 027234 160 LHQQFVSAVKELGFDKAGPKKILELMNIPGLTRENVASHLQKHRLYLSRLSGV 212 (226)
Q Consensus 160 l~~~Fi~~~~~~g~~~~~p~~I~~~~~~~~lt~~~va~~l~~~r~~l~r~~~~ 212 (226)
-.++++.++.+ ++..-.-.++|+++||.+.++||..||+-|+.
T Consensus 14 ~r~~Il~AA~~----------l~~~~G~~~~tv~~IA~~agvs~~t~Y~~F~s 56 (231)
T 2qib_A 14 RRQQLIGVALD----------LFSRRSPDEVSIDEIASAAGISRPLVYHYFPG 56 (231)
T ss_dssp HHHHHHHHHHH----------HHHHSCGGGCCHHHHHHHHTSCHHHHHHHCSS
T ss_pred HHHHHHHHHHH----------HHHHcCchhcCHHHHHHHhCCCHHHHHHHCCC
Confidence 35677777777 34444556899999999999999999998864
No 231
>2o7t_A Transcriptional regulator; transcription regulator, DNA/RNA-binding 3-helical bundle FO turn helix motif, HTH motif; HET: UNL; 2.10A {Corynebacterium glutamicum} SCOP: a.4.1.9 a.121.1.1
Probab=81.32 E-value=1 Score=33.27 Aligned_cols=42 Identities=17% Similarity=0.100 Sum_probs=33.2
Q ss_pred HHHHHHHHHHhCCCCCCchHHHHhhCCCCCCHHHHHHHhhhhhhhhhcccCC
Q 027234 161 HQQFVSAVKELGFDKAGPKKILELMNIPGLTRENVASHLQKHRLYLSRLSGV 212 (226)
Q Consensus 161 ~~~Fi~~~~~~g~~~~~p~~I~~~~~~~~lt~~~va~~l~~~r~~l~r~~~~ 212 (226)
.++++.++.+ ++..-.-.+.|+++||.+.|+||..+|+-|+.
T Consensus 10 r~~Il~aA~~----------lf~~~G~~~~t~~~IA~~agvs~~tlY~~F~s 51 (199)
T 2o7t_A 10 REHIITTTCN----------LYRTHHHDSLTMENIAEQAGVGVATLYRNFPD 51 (199)
T ss_dssp HHHHHHHHHH----------HHHHSCGGGCCHHHHHHHHTCCHHHHHHHCSS
T ss_pred HHHHHHHHHH----------HHHHCCCccCCHHHHHHHhCCCHHHHHHHcCC
Confidence 4567777777 33444556889999999999999999998864
No 232
>3nxc_A HTH-type protein SLMA; nucleoid occlusion, cell division, TETR family member, DNA B protein; 2.50A {Escherichia coli}
Probab=81.20 E-value=1.1 Score=33.09 Aligned_cols=43 Identities=9% Similarity=0.035 Sum_probs=29.8
Q ss_pred HHHHHHHHHHhCCCCCCchHHHHhhCCCCCCHHHHHHHhhhhhhhhhcccCC
Q 027234 161 HQQFVSAVKELGFDKAGPKKILELMNIPGLTRENVASHLQKHRLYLSRLSGV 212 (226)
Q Consensus 161 ~~~Fi~~~~~~g~~~~~p~~I~~~~~~~~lt~~~va~~l~~~r~~l~r~~~~ 212 (226)
.++++.++.+ .+.......++|+++||.+.|+||..+|+-|+.
T Consensus 26 r~~Il~aA~~---------~lf~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~s 68 (212)
T 3nxc_A 26 REEILQSLAL---------MLESSDGSQRITTAKLAASVGVSEAALYRHFPS 68 (212)
T ss_dssp HHHHHHHHHH---------HHHC------CCHHHHHHHTTSCHHHHHTTCSS
T ss_pred HHHHHHHHHH---------HHHhcCChhhcCHHHHHHHhCCChhHHHHHCCC
Confidence 4677777666 233444556899999999999999999998874
No 233
>3crj_A Transcription regulator; APC88200, TETR, structura genomics, PSI-2, protein structure initiative; HET: MSE; 2.60A {Haloarcula marismortui atcc 43049}
Probab=81.10 E-value=1.8 Score=32.05 Aligned_cols=43 Identities=14% Similarity=0.107 Sum_probs=34.3
Q ss_pred hHHHHHHHHHHhCCCCCCchHHHHhhCCCCCCHHHHHHHhhhhhhhhhcccCC
Q 027234 160 LHQQFVSAVKELGFDKAGPKKILELMNIPGLTRENVASHLQKHRLYLSRLSGV 212 (226)
Q Consensus 160 l~~~Fi~~~~~~g~~~~~p~~I~~~~~~~~lt~~~va~~l~~~r~~l~r~~~~ 212 (226)
..++++.++.+ +...-.-.+.|+++||...|+|+..+|+-|+.
T Consensus 15 ~r~~Il~aA~~----------lf~~~G~~~~s~~~IA~~agvsk~tlY~yF~s 57 (199)
T 3crj_A 15 QTEEIMQATYR----------ALREHGYADLTIQRIADEYGKSTAAVHYYYDT 57 (199)
T ss_dssp HHHHHHHHHHH----------HHHHHTTTTCCHHHHHHHHTSCHHHHHTTCSS
T ss_pred HHHHHHHHHHH----------HHHHcCcccCCHHHHHHHhCCChhHHhhhcCC
Confidence 35677888887 34444566899999999999999999998864
No 234
>3mvp_A TETR/ACRR transcriptional regulator; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 1.85A {Streptococcus mutans}
Probab=81.05 E-value=1.1 Score=33.35 Aligned_cols=44 Identities=11% Similarity=0.072 Sum_probs=34.7
Q ss_pred hhHHHHHHHHHHhCCCCCCchHHHHhhCCCCCCHHHHHHHhhhhhhhhhcccCC
Q 027234 159 ELHQQFVSAVKELGFDKAGPKKILELMNIPGLTRENVASHLQKHRLYLSRLSGV 212 (226)
Q Consensus 159 ~l~~~Fi~~~~~~g~~~~~p~~I~~~~~~~~lt~~~va~~l~~~r~~l~r~~~~ 212 (226)
.-.++++.++.+ ++..-.-.++|+++||.+.|+|+..+|+-|+.
T Consensus 26 ~~r~~Il~aA~~----------l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~s 69 (217)
T 3mvp_A 26 EKRNKILQVAKD----------LFSDKTYFNVTTNEIAKKADVSVGTLYAYFAS 69 (217)
T ss_dssp HHHHHHHHHHHH----------HHHHHCGGGCCHHHHHHHHTSCHHHHHHHCSS
T ss_pred hHHHHHHHHHHH----------HHHHcCccccCHHHHHHHhCCChhHHHHHcCC
Confidence 345678888877 33444566899999999999999999998864
No 235
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=80.80 E-value=0.51 Score=29.41 Aligned_cols=31 Identities=19% Similarity=0.226 Sum_probs=24.8
Q ss_pred HHHhhCCCCCCHHHHHHHhhhhhhhhhcccC
Q 027234 181 ILELMNIPGLTRENVASHLQKHRLYLSRLSG 211 (226)
Q Consensus 181 I~~~~~~~~lt~~~va~~l~~~r~~l~r~~~ 211 (226)
|.+.+...++|..++|..+++++++++++..
T Consensus 12 l~~~r~~~g~sq~~lA~~~gis~~~i~~~e~ 42 (78)
T 3b7h_A 12 LMELITQQNLTINRVATLAGLNQSTVNAMFE 42 (78)
T ss_dssp HHHHHHHTTCCHHHHHHHHTCCHHHHHHHHC
T ss_pred HHHHHHHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 4444555689999999999999999998644
No 236
>1qo2_A Molecule: N-((5-phosphoribosyl)-formimino)-5-aminoimidazol- 4-carboxamid ribonucleotid...; isomerase, histidine biosynthesis; 1.85A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2cff_A 2w79_A
Probab=80.79 E-value=9.9 Score=29.27 Aligned_cols=78 Identities=14% Similarity=0.226 Sum_probs=54.4
Q ss_pred CHHHHHHHHHhCCCCce-EEEEccC----CCCCCHHHHHHHHhcCCCCcEEEEeccCCHHHHHHHHhC-----C-cceEE
Q 027234 10 RAEIALDMLRTNKNGYD-IVISDVH----MPDMDGFKLLELVGLEMDLPVIMMCAHGSKEVVMKGVTH-----D-ACDYL 78 (226)
Q Consensus 10 ~~~eal~~l~~~~~~~D-lVl~D~~----mp~~dG~~l~~~l~~~~~~pvI~ls~~~~~~~~~~a~~~-----g-a~~yl 78 (226)
+..+....+.+.. ++ ++++++. +.+. .+++++.++...++|||...+-.+.+.+.++++. | +++.+
T Consensus 145 ~~~e~~~~~~~~G--~~~i~~t~~~~~g~~~g~-~~~~i~~l~~~~~iPvia~GGI~~~~d~~~~~~~~~~~~G~adgv~ 221 (241)
T 1qo2_A 145 DPVSLLKRLKEYG--LEEIVHTEIEKDGTLQEH-DFSLTKKIAIEAEVKVLAAGGISSENSLKTAQKVHTETNGLLKGVI 221 (241)
T ss_dssp CHHHHHHHHHTTT--CCEEEEEETTHHHHTCCC-CHHHHHHHHHHHTCEEEEESSCCSHHHHHHHHHHHHHTTTSEEEEE
T ss_pred CHHHHHHHHHhCC--CCEEEEEeecccccCCcC-CHHHHHHHHHhcCCcEEEECCCCCHHHHHHHHhcccccCCeEeEEE
Confidence 4556555555533 67 5555543 2233 3888888876668999998888888999999988 9 99877
Q ss_pred e------CCCCHHHHHHH
Q 027234 79 T------KPVRIEELKNI 90 (226)
Q Consensus 79 ~------KP~~~~~L~~~ 90 (226)
. .+++..++...
T Consensus 222 vgsal~~~~~~~~~~~~~ 239 (241)
T 1qo2_A 222 VGRAFLEGILTVEVMKRY 239 (241)
T ss_dssp ECHHHHTTSSCHHHHHHH
T ss_pred eeHHHHcCCCCHHHHHHH
Confidence 4 47777776543
No 237
>2y2z_A SIM16, SIMR, putative repressor simreg2; transcription, simocyclinone regulator, TETR-family; 1.95A {Streptomyces antibioticus} PDB: 2y30_A* 2y31_A* 3zql_A
Probab=80.75 E-value=1.8 Score=34.31 Aligned_cols=42 Identities=17% Similarity=0.172 Sum_probs=34.6
Q ss_pred HHHHHHHHHHhCCCCCCchHHHHhhCCCCCCHHHHHHHhhhhhhhhhcccCC
Q 027234 161 HQQFVSAVKELGFDKAGPKKILELMNIPGLTRENVASHLQKHRLYLSRLSGV 212 (226)
Q Consensus 161 ~~~Fi~~~~~~g~~~~~p~~I~~~~~~~~lt~~~va~~l~~~r~~l~r~~~~ 212 (226)
.++++.++.. ++..-...++|+..||.++++++..||+-|+.
T Consensus 29 r~~Il~AA~~----------L~~e~G~~~~Smr~IA~~aGVs~~tlY~hF~~ 70 (267)
T 2y2z_A 29 RDQIVRAAVK----------VADTEGVEAASMRRVAAELGAGTMSLYYYVPT 70 (267)
T ss_dssp HHHHHHHHHH----------HHHHHCTTTCCHHHHHHHHTCCHHHHHTTCCS
T ss_pred HHHHHHHHHH----------HHHhcCcccCCHHHHHHHhCCCHHHHHHHcCC
Confidence 5677778777 44555677999999999999999999998864
No 238
>2ao9_A Phage protein; structural genomics, nine-fold NCS., PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.90A {Bacillus cereus} SCOP: a.4.1.17
Probab=80.74 E-value=1.5 Score=32.01 Aligned_cols=21 Identities=24% Similarity=0.221 Sum_probs=19.7
Q ss_pred CCCCHHHHHHHhhhhhhhhhc
Q 027234 188 PGLTRENVASHLQKHRLYLSR 208 (226)
Q Consensus 188 ~~lt~~~va~~l~~~r~~l~r 208 (226)
.++|+.+||..||+||..|||
T Consensus 47 ~~lTv~eIA~~LGIS~~TLyr 67 (155)
T 2ao9_A 47 EKRTQDEMANELGINRTTLWE 67 (155)
T ss_dssp CCCCHHHHHHHHTCCHHHHHH
T ss_pred cCCCHHHHHHHhCCCHHHHHH
Confidence 379999999999999999997
No 239
>1ui5_A A-factor receptor homolog; helix-turn-helix, alpha-helix-bundle, antibiotic; 2.40A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1 PDB: 1ui6_A
Probab=80.54 E-value=1.6 Score=32.79 Aligned_cols=43 Identities=9% Similarity=0.070 Sum_probs=34.0
Q ss_pred hHHHHHHHHHHhCCCCCCchHHHHhhCCCCCCHHHHHHHhhhhhhhhhcccCC
Q 027234 160 LHQQFVSAVKELGFDKAGPKKILELMNIPGLTRENVASHLQKHRLYLSRLSGV 212 (226)
Q Consensus 160 l~~~Fi~~~~~~g~~~~~p~~I~~~~~~~~lt~~~va~~l~~~r~~l~r~~~~ 212 (226)
-.++++.++.+ +...-.-.+.|+++||.+.|+||..||+-|+.
T Consensus 10 ~r~~Il~aA~~----------lf~~~Gy~~ts~~~IA~~AGvskgtlY~~F~s 52 (215)
T 1ui5_A 10 TRATIIGAAAD----------LFDRRGYESTTLSEIVAHAGVTKGALYFHFAA 52 (215)
T ss_dssp HHHHHHHHHHH----------HHHHHCTTTCCHHHHHHHHTCCHHHHHHHCSS
T ss_pred HHHHHHHHHHH----------HHHHhCcccCCHHHHHHHhCCCchhhHhhCCC
Confidence 34677778777 33444566899999999999999999998864
No 240
>3hta_A EBRA repressor; TETR family, DNA binding protein, multidrug resistance, MULT binding protein, DNA-binding, transcription; 2.30A {Streptomyces lividans} PDB: 3hth_A* 3hti_A* 3htj_A* 3iuv_A
Probab=80.45 E-value=1.1 Score=33.79 Aligned_cols=43 Identities=16% Similarity=0.136 Sum_probs=34.1
Q ss_pred hHHHHHHHHHHhCCCCCCchHHHHhhCCCCCCHHHHHHHhhhhhhhhhcccCC
Q 027234 160 LHQQFVSAVKELGFDKAGPKKILELMNIPGLTRENVASHLQKHRLYLSRLSGV 212 (226)
Q Consensus 160 l~~~Fi~~~~~~g~~~~~p~~I~~~~~~~~lt~~~va~~l~~~r~~l~r~~~~ 212 (226)
..++++.++.+ ++..-.-.++|+++||.+.|+||..||+-|+.
T Consensus 29 ~r~~Il~AA~~----------lf~~~G~~~~t~~~IA~~aGvs~~tlY~~F~s 71 (217)
T 3hta_A 29 RRQRIIDAAIR----------VVGQKGIAGLSHRTVAAEADVPLGSTTYHFAT 71 (217)
T ss_dssp HHHHHHHHHHH----------HHHHHTGGGCCHHHHHHHHTCCHHHHHHHCSS
T ss_pred HHHHHHHHHHH----------HHHHcCcccCCHHHHHHHcCCCcchhhhcCCC
Confidence 35678888887 33334556899999999999999999998864
No 241
>2xij_A Methylmalonyl-COA mutase, mitochondrial; isomerase, organic aciduria, vitamin B12; HET: B12 5AD BTB; 1.95A {Homo sapiens} PDB: 2xiq_A* 3bic_A
Probab=80.43 E-value=10 Score=34.82 Aligned_cols=96 Identities=10% Similarity=-0.040 Sum_probs=63.3
Q ss_pred CCcEEEEE---CCHHHHHHHHHhCCCCceEEEEccCCCC-CC-HHHHHHHHhcC-C-CCcEEEEeccCCHHHHHHHHhCC
Q 027234 1 MGFSVTKC---NRAEIALDMLRTNKNGYDIVISDVHMPD-MD-GFKLLELVGLE-M-DLPVIMMCAHGSKEVVMKGVTHD 73 (226)
Q Consensus 1 lg~~V~~~---~~~~eal~~l~~~~~~~DlVl~D~~mp~-~d-G~~l~~~l~~~-~-~~pvI~ls~~~~~~~~~~a~~~g 73 (226)
.||+|..- .+.++.++.+.+.. +|+|.+...|.. +. .-++++.|+.. . +++ |++-+.........+.+.|
T Consensus 631 ~GfeVi~lG~~v~~eeiv~aA~e~~--adiVglSsl~~~~~~~~~~vi~~Lr~~G~~dv~-VivGG~~P~~d~~~l~~~G 707 (762)
T 2xij_A 631 LGFDVDIGPLFQTPREVAQQAVDAD--VHAVGVSTLAAGHKTLVPELIKELNSLGRPDIL-VMCGGVIPPQDYEFLFEVG 707 (762)
T ss_dssp TTCEEEECCTTCCHHHHHHHHHHTT--CSEEEEEECSSCHHHHHHHHHHHHHHTTCTTSE-EEEEESCCGGGHHHHHHHT
T ss_pred CCeEEeeCCCCCCHHHHHHHHHHcC--CCEEEEeeecHHHHHHHHHHHHHHHhcCCCCCE-EEEeCCCCcccHHHHHhCC
Confidence 37888743 36788888888866 999998887754 22 34455666633 2 333 3344322222344467899
Q ss_pred cceEEeCCCCHHHHHHHHHHHHHHHh
Q 027234 74 ACDYLTKPVRIEELKNIWQHVVRKRK 99 (226)
Q Consensus 74 a~~yl~KP~~~~~L~~~l~~~~~~~~ 99 (226)
+++|+..--+..+....+...+..+.
T Consensus 708 aD~~f~pgtd~~e~~~~i~~~l~~~~ 733 (762)
T 2xij_A 708 VSNVFGPGTRIPKAAVQVLDDIEKCL 733 (762)
T ss_dssp CCEEECTTCCHHHHHHHHHHHHHHHH
T ss_pred CCEEeCCCCCHHHHHHHHHHHHHHHh
Confidence 99999877788888888877775544
No 242
>3trb_A Virulence-associated protein I; mobIle and extrachromosomal element functions, DNA binding P; 2.00A {Coxiella burnetii}
Probab=80.29 E-value=0.94 Score=30.55 Aligned_cols=27 Identities=15% Similarity=0.162 Sum_probs=24.2
Q ss_pred hhCCCCCCHHHHHHHhhhhhhhhhccc
Q 027234 184 LMNIPGLTRENVASHLQKHRLYLSRLS 210 (226)
Q Consensus 184 ~~~~~~lt~~~va~~l~~~r~~l~r~~ 210 (226)
.+..-++|..++|..+++|+++++++-
T Consensus 22 lr~~~gltq~eLA~~lGis~~~is~ie 48 (104)
T 3trb_A 22 LGFLDKMSANQLAKHLAIPTNRVTAIL 48 (104)
T ss_dssp HHHTTSCCHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHCcCHHHHHHHH
Confidence 577889999999999999999999863
No 243
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=80.29 E-value=0.38 Score=28.84 Aligned_cols=31 Identities=10% Similarity=0.174 Sum_probs=24.8
Q ss_pred HHHhhCCCCCCHHHHHHHhhhhhhhhhcccC
Q 027234 181 ILELMNIPGLTRENVASHLQKHRLYLSRLSG 211 (226)
Q Consensus 181 I~~~~~~~~lt~~~va~~l~~~r~~l~r~~~ 211 (226)
|.+.+...++|..++|..+++++++++++..
T Consensus 6 l~~~r~~~g~s~~~lA~~~gis~~~i~~~e~ 36 (66)
T 2xi8_A 6 LKLIREKKKISQSELAALLEVSRQTINGIEK 36 (66)
T ss_dssp HHHHHHHTTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHHHHHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 4444555689999999999999999998644
No 244
>3s8q_A R-M controller protein; protein-DNA complex, helix-turn-helix; HET: DNA; 2.10A {Enterobacter SP} SCOP: a.35.1.0 PDB: 3clc_A* 3ufd_A*
Probab=80.26 E-value=0.54 Score=29.77 Aligned_cols=30 Identities=27% Similarity=0.391 Sum_probs=24.9
Q ss_pred HHHhhCCCCCCHHHHHHHhhhhhhhhhccc
Q 027234 181 ILELMNIPGLTRENVASHLQKHRLYLSRLS 210 (226)
Q Consensus 181 I~~~~~~~~lt~~~va~~l~~~r~~l~r~~ 210 (226)
|.+.+...++|..++|..+++++++++++-
T Consensus 16 lk~~R~~~glsq~~lA~~~gis~~~i~~~e 45 (82)
T 3s8q_A 16 IKKIRLEKGMTQEDLAYKSNLDRTYISGIE 45 (82)
T ss_dssp HHHHHHHTTCCHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHhCcCHHHHHHHH
Confidence 444555669999999999999999999864
No 245
>1xm3_A Thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI, NESG, northeast structural genomics consortium; 1.80A {Bacillus subtilis} SCOP: c.1.31.1 PDB: 1tyg_A
Probab=80.22 E-value=3.5 Score=32.68 Aligned_cols=76 Identities=16% Similarity=0.132 Sum_probs=50.5
Q ss_pred CcEEE--EECCHHHHHHHHHhCCCCceEEEEccCC-C---CCCHHHHHHHHhcCCCCcEEEEeccCCHHHHHHHHhCCcc
Q 027234 2 GFSVT--KCNRAEIALDMLRTNKNGYDIVISDVHM-P---DMDGFKLLELVGLEMDLPVIMMCAHGSKEVVMKGVTHDAC 75 (226)
Q Consensus 2 g~~V~--~~~~~~eal~~l~~~~~~~DlVl~D~~m-p---~~dG~~l~~~l~~~~~~pvI~ls~~~~~~~~~~a~~~ga~ 75 (226)
|+.+. ++.+.+++....+. . .|.|+.=-.. + +..+.++++.+++..++|||+..+-.+.+.+.+++..||+
T Consensus 126 g~~vi~~~~~~~~~a~~~~~~-g--ad~v~~~~~~~Gt~~~~~~~~~l~~i~~~~~iPviv~gGI~t~eda~~~~~~GAd 202 (264)
T 1xm3_A 126 GFIVLPYTSDDVVLARKLEEL-G--VHAIMPGASPIGSGQGILNPLNLSFIIEQAKVPVIVDAGIGSPKDAAYAMELGAD 202 (264)
T ss_dssp TCCEEEEECSCHHHHHHHHHH-T--CSCBEECSSSTTCCCCCSCHHHHHHHHHHCSSCBEEESCCCSHHHHHHHHHTTCS
T ss_pred CeEEEEEcCCCHHHHHHHHHh-C--CCEEEECCcccCCCCCCCCHHHHHHHHhcCCCCEEEEeCCCCHHHHHHHHHcCCC
Confidence 44444 44566666555443 2 5766330000 1 1234778888876678999999998889999999999999
Q ss_pred eEEeC
Q 027234 76 DYLTK 80 (226)
Q Consensus 76 ~yl~K 80 (226)
+.+.=
T Consensus 203 gViVG 207 (264)
T 1xm3_A 203 GVLLN 207 (264)
T ss_dssp EEEES
T ss_pred EEEEc
Confidence 98843
No 246
>3cdl_A Transcriptional regulator AEFR; APC88582, TETR, pseudomonas syringae PV. tomato STR. DC3000, structural genomics, PSI-2; HET: MSE; 2.36A {Pseudomonas syringae PV}
Probab=80.18 E-value=1.9 Score=31.93 Aligned_cols=43 Identities=7% Similarity=-0.048 Sum_probs=34.0
Q ss_pred hHHHHHHHHHHhCCCCCCchHHHHhhCCCCCCHHHHHHHhhhhhhhhhcccCC
Q 027234 160 LHQQFVSAVKELGFDKAGPKKILELMNIPGLTRENVASHLQKHRLYLSRLSGV 212 (226)
Q Consensus 160 l~~~Fi~~~~~~g~~~~~p~~I~~~~~~~~lt~~~va~~l~~~r~~l~r~~~~ 212 (226)
..++++.++.+ +...-.-.+.|+++||++.|+|+..+|+-|+.
T Consensus 10 ~r~~Il~aA~~----------lf~~~G~~~~s~~~IA~~aGvsk~tlY~~F~s 52 (203)
T 3cdl_A 10 KRESIVQAAIA----------EFGDRGFEITSMDRIAARAEVSKRTVYNHFPS 52 (203)
T ss_dssp HHHHHHHHHHH----------HHHHHCTTTCCHHHHHHHTTSCHHHHHTTSSS
T ss_pred HHHHHHHHHHH----------HHHHcCchhcCHHHHHHHhCCCHHHHHHHCCC
Confidence 35677888887 33344566899999999999999999998874
No 247
>2iai_A Putative transcriptional regulator SCO3833; structural genomics, TETR, unknow function, PSI-2, protein structure initiative; 1.65A {Streptomyces coelicolor}
Probab=80.16 E-value=1.7 Score=32.91 Aligned_cols=41 Identities=7% Similarity=0.045 Sum_probs=32.0
Q ss_pred HHHHHHHHHhCCCCCCchHHHHhhCCCCCCHHHHHHHhhhhhhhhhcccCC
Q 027234 162 QQFVSAVKELGFDKAGPKKILELMNIPGLTRENVASHLQKHRLYLSRLSGV 212 (226)
Q Consensus 162 ~~Fi~~~~~~g~~~~~p~~I~~~~~~~~lt~~~va~~l~~~r~~l~r~~~~ 212 (226)
++++.++.+ ++..-.-.++|+++||.+.++||..||+-|+.
T Consensus 33 ~~Il~aA~~----------lf~~~G~~~~t~~~IA~~Agvs~~t~Y~~F~s 73 (230)
T 2iai_A 33 ETLLSVAVQ----------VFIERGYDGTSMEHLSKAAGISKSSIYHHVTG 73 (230)
T ss_dssp SCHHHHHHH----------HHHHHCTTTCCHHHHHHHHTSCHHHHTTTCSS
T ss_pred HHHHHHHHH----------HHHHcCccccCHHHHHHHHCCChhHHHHhCCC
Confidence 355666666 33444566899999999999999999998864
No 248
>3pas_A TETR family transcription regulator; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.90A {Marinobacter aquaeolei}
Probab=80.07 E-value=0.56 Score=34.22 Aligned_cols=43 Identities=9% Similarity=-0.065 Sum_probs=33.0
Q ss_pred hHHHHHHHHHHhCCCCCCchHHHHhhCCCCCCHHHHHHHhhhhhhhhhcccCC
Q 027234 160 LHQQFVSAVKELGFDKAGPKKILELMNIPGLTRENVASHLQKHRLYLSRLSGV 212 (226)
Q Consensus 160 l~~~Fi~~~~~~g~~~~~p~~I~~~~~~~~lt~~~va~~l~~~r~~l~r~~~~ 212 (226)
-.++++.++.+ ++..-.-.++|+++||.+.|+||..+|+-|+.
T Consensus 9 ~r~~Il~aa~~----------l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~s 51 (195)
T 3pas_A 9 KRIAFLEATVR----------EVADHGFSATSVGKIAKAAGLSPATLYIYYED 51 (195)
T ss_dssp HHHHHHHHHHH----------HHHHHHHHHCCHHHHHHHHTSCHHHHHHHCSS
T ss_pred HHHHHHHHHHH----------HHHHcChHhcCHHHHHHHhCCCchHHHHHcCC
Confidence 34677777777 33333445799999999999999999998874
No 249
>1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5
Probab=80.01 E-value=8 Score=29.31 Aligned_cols=71 Identities=17% Similarity=0.149 Sum_probs=49.0
Q ss_pred EECCHHHHHHHHHhCCCCceEEEEccC-----CC----CCCHHHHHHHHhcCCCCcEEEEeccCCHHHHHHHHhCCcceE
Q 027234 7 KCNRAEIALDMLRTNKNGYDIVISDVH-----MP----DMDGFKLLELVGLEMDLPVIMMCAHGSKEVVMKGVTHDACDY 77 (226)
Q Consensus 7 ~~~~~~eal~~l~~~~~~~DlVl~D~~-----mp----~~dG~~l~~~l~~~~~~pvI~ls~~~~~~~~~~a~~~ga~~y 77 (226)
.+.+.+++...... +.|+|.+... .+ ...++++++.++...++|||...+-.+.+.+.+++..||+++
T Consensus 125 ~~~t~~e~~~~~~~---G~d~i~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~ipvia~GGI~~~~~~~~~~~~Gad~v 201 (223)
T 1y0e_A 125 DIATVEEAKNAARL---GFDYIGTTLHGYTSYTQGQLLYQNDFQFLKDVLQSVDAKVIAEGNVITPDMYKRVMDLGVHCS 201 (223)
T ss_dssp ECSSHHHHHHHHHT---TCSEEECTTTTSSTTSTTCCTTHHHHHHHHHHHHHCCSEEEEESSCCSHHHHHHHHHTTCSEE
T ss_pred cCCCHHHHHHHHHc---CCCEEEeCCCcCcCCCCCCCCCcccHHHHHHHHhhCCCCEEEecCCCCHHHHHHHHHcCCCEE
Confidence 45567777765442 3788765321 01 123456778887556799998888779999999999999998
Q ss_pred EeC
Q 027234 78 LTK 80 (226)
Q Consensus 78 l~K 80 (226)
+.=
T Consensus 202 ~vG 204 (223)
T 1y0e_A 202 VVG 204 (223)
T ss_dssp EEC
T ss_pred EEC
Confidence 853
No 250
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=79.99 E-value=0.56 Score=28.80 Aligned_cols=31 Identities=26% Similarity=0.330 Sum_probs=25.2
Q ss_pred HHHhhCCCCCCHHHHHHHhhhhhhhhhcccC
Q 027234 181 ILELMNIPGLTRENVASHLQKHRLYLSRLSG 211 (226)
Q Consensus 181 I~~~~~~~~lt~~~va~~l~~~r~~l~r~~~ 211 (226)
|.+.+...++|..++|..+++++++++++-.
T Consensus 18 l~~~r~~~g~s~~~lA~~~gis~~~i~~~e~ 48 (74)
T 1y7y_A 18 LRELRTAKGLSQETLAFLSGLDRSYVGGVER 48 (74)
T ss_dssp HHHHHHHTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HHHHHHHcCCCHHHHHHHHCcCHHHHHHHHC
Confidence 4455556699999999999999999998643
No 251
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=79.97 E-value=0.56 Score=29.11 Aligned_cols=31 Identities=23% Similarity=0.420 Sum_probs=24.9
Q ss_pred HHHhhCCCCCCHHHHHHHhhhhhhhhhcccC
Q 027234 181 ILELMNIPGLTRENVASHLQKHRLYLSRLSG 211 (226)
Q Consensus 181 I~~~~~~~~lt~~~va~~l~~~r~~l~r~~~ 211 (226)
|.+.+..-++|..++|..+++++++++++..
T Consensus 15 l~~~r~~~glsq~~lA~~~gis~~~i~~~e~ 45 (77)
T 2b5a_A 15 LKKIRTQKGVSQEELADLAGLHRTYISEVER 45 (77)
T ss_dssp HHHHHHHTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HHHHHHHcCCCHHHHHHHHCCCHHHHHHHHC
Confidence 4444555689999999999999999998643
No 252
>2q24_A Putative TETR family transcriptional regulator; structural genomics, PSI, protein structure initiative; 1.80A {Streptomyces coelicolor A3}
Probab=79.94 E-value=1.6 Score=31.95 Aligned_cols=41 Identities=15% Similarity=0.026 Sum_probs=32.7
Q ss_pred HHHHHHHHHHhCCCCCCchHHHHhhCCCCCCHHHHHHHhhhhhhhhhcccCC
Q 027234 161 HQQFVSAVKELGFDKAGPKKILELMNIPGLTRENVASHLQKHRLYLSRLSGV 212 (226)
Q Consensus 161 ~~~Fi~~~~~~g~~~~~p~~I~~~~~~~~lt~~~va~~l~~~r~~l~r~~~~ 212 (226)
.++++.++.+ .+.+ -.-. .|+++||.+.|+|+..+|+-|+.
T Consensus 17 r~~Il~aA~~---------lf~~-~G~~-~s~~~IA~~agvs~~tlY~~F~s 57 (194)
T 2q24_A 17 RDKILAAAVR---------VFSE-EGLD-AHLERIAREAGVGSGTLYRNFPT 57 (194)
T ss_dssp HHHHHHHHHH---------HHHH-HCTT-CCHHHHHHHTTCCHHHHHHHCCS
T ss_pred HHHHHHHHHH---------HHHh-cCcC-CCHHHHHHHhCCChHHHHHHcCC
Confidence 5678888888 2433 3455 89999999999999999998864
No 253
>2rek_A Putative TETR-family transcriptional regulator; sulfur, SAD, structural genomics, PSI-2, protein structure initiative; 1.86A {Streptomyces coelicolor A3}
Probab=79.90 E-value=1.1 Score=32.90 Aligned_cols=42 Identities=12% Similarity=0.055 Sum_probs=33.2
Q ss_pred hHHHHHHHHHHhCCCCCCchHHHHhhCCCCCCHHHHHHHhhhhhhhhhcccCC
Q 027234 160 LHQQFVSAVKELGFDKAGPKKILELMNIPGLTRENVASHLQKHRLYLSRLSGV 212 (226)
Q Consensus 160 l~~~Fi~~~~~~g~~~~~p~~I~~~~~~~~lt~~~va~~l~~~r~~l~r~~~~ 212 (226)
-.++++.++.+ .+.+ -.- +.|+++||.+.++|+..+|+-|+.
T Consensus 17 ~r~~Il~aA~~---------lf~~-~G~-~~s~~~Ia~~agvs~~t~Y~~F~s 58 (199)
T 2rek_A 17 NYDRIIEAAAA---------EVAR-HGA-DASLEEIARRAGVGSATLHRHFPS 58 (199)
T ss_dssp HHHHHHHHHHH---------HHHH-HGG-GCCHHHHHHHHTCCHHHHHHHCSS
T ss_pred HHHHHHHHHHH---------HHHh-cCC-CCCHHHHHHHhCCchHHHHHHCCC
Confidence 35678888888 2433 345 689999999999999999998864
No 254
>3cjd_A Transcriptional regulator, TETR family; YP_510936.1, putative TETR transcriptional regulator, struct genomics; HET: STE; 1.79A {Jannaschia SP}
Probab=79.80 E-value=1.2 Score=32.95 Aligned_cols=44 Identities=9% Similarity=0.063 Sum_probs=35.4
Q ss_pred hhHHHHHHHHHHhCCCCCCchHHHHhhCCCCCCHHHHHHHhhhhhhhhhcccCC
Q 027234 159 ELHQQFVSAVKELGFDKAGPKKILELMNIPGLTRENVASHLQKHRLYLSRLSGV 212 (226)
Q Consensus 159 ~l~~~Fi~~~~~~g~~~~~p~~I~~~~~~~~lt~~~va~~l~~~r~~l~r~~~~ 212 (226)
...++++.++.+ ++..-...++|+++||...++||..+|+-|+.
T Consensus 12 ~tr~~Il~aA~~----------l~~e~G~~~~s~~~IA~~agvs~~t~Y~hF~~ 55 (198)
T 3cjd_A 12 ALREKLIDLAEA----------QIEAEGLASLRARELARQADCAVGAIYTHFQD 55 (198)
T ss_dssp HHHHHHHHHHHH----------HHHHHCGGGCCHHHHHHHHTSCHHHHHHHCSS
T ss_pred HHHHHHHHHHHH----------HHHhCChhhcCHHHHHHHhCCCccHHHHHhCC
Confidence 345678888888 44445667899999999999999999998864
No 255
>2auw_A Hypothetical protein NE0471; alpha-beta structure, structural genomics, PSI, protein STRU initiative; 1.85A {Nitrosomonas europaea} SCOP: a.35.1.10 d.331.1.1
Probab=79.77 E-value=1.4 Score=32.70 Aligned_cols=41 Identities=20% Similarity=0.176 Sum_probs=33.4
Q ss_pred HHHHhCCCCCCchHHHHhhCCCCCCHHHHHHHhhhhhhhhhcc
Q 027234 167 AVKELGFDKAGPKKILELMNIPGLTRENVASHLQKHRLYLSRL 209 (226)
Q Consensus 167 ~~~~~g~~~~~p~~I~~~~~~~~lt~~~va~~l~~~r~~l~r~ 209 (226)
...+-| ...|..|.+.+..-++|+.++|..|++||+.+.+.
T Consensus 83 ~~~~~~--~~s~~~lk~lR~~~glTQ~elA~~LGvsr~tis~y 123 (170)
T 2auw_A 83 AKEQAG--EVSHEMFGDWMHRNNLSLTTAAEALGISRRMVSYY 123 (170)
T ss_dssp HHHHTT--CCCHHHHHHHHHHTTCCHHHHHHHHTSCHHHHHHH
T ss_pred hhhhcc--CCCcHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHH
Confidence 344444 56688899999999999999999999999987653
No 256
>3o60_A LIN0861 protein; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative, unknown function; 2.80A {Listeria innocua}
Probab=79.69 E-value=1.6 Score=32.33 Aligned_cols=42 Identities=7% Similarity=0.156 Sum_probs=32.8
Q ss_pred HHHHHHHHHHhCCCCCCchHH-HHhhCCCCCCHHHHHHHhhhhhhhhhcccCC
Q 027234 161 HQQFVSAVKELGFDKAGPKKI-LELMNIPGLTRENVASHLQKHRLYLSRLSGV 212 (226)
Q Consensus 161 ~~~Fi~~~~~~g~~~~~p~~I-~~~~~~~~lt~~~va~~l~~~r~~l~r~~~~ 212 (226)
.++++.++.+ + +..-.-.++|+++||..-|+||..+|+-|+.
T Consensus 21 r~~I~~Aa~~----------lF~~~~g~~~~tv~~Ia~~Agvs~~t~Y~~F~~ 63 (185)
T 3o60_A 21 QTKLYTVLER----------FYVEDRTFESISIKDLCEQARVSRATFYRHHKE 63 (185)
T ss_dssp HHHHHHHHHH----------HHHTTCCTTTCCHHHHHHHHTCCHHHHHHHCSS
T ss_pred HHHHHHHHHH----------HHHhcCCcccCCHHHHHHHhCCCHHHHHHHcCC
Confidence 3456666666 4 4555667899999999999999999998764
No 257
>1vi0_A Transcriptional regulator; structural genomics; HET: MSE DCC; 1.65A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=79.66 E-value=1.3 Score=33.12 Aligned_cols=42 Identities=10% Similarity=-0.061 Sum_probs=33.4
Q ss_pred HHHHHHHHHHhCCCCCCchHHHHhhCCCCCCHHHHHHHhhhhhhhhhcccCC
Q 027234 161 HQQFVSAVKELGFDKAGPKKILELMNIPGLTRENVASHLQKHRLYLSRLSGV 212 (226)
Q Consensus 161 ~~~Fi~~~~~~g~~~~~p~~I~~~~~~~~lt~~~va~~l~~~r~~l~r~~~~ 212 (226)
.++++.++.+ +...-.-.+.|+++||...|+||..+|+-|+.
T Consensus 10 r~~Il~aA~~----------lf~~~Gy~~~s~~~IA~~AGvs~gt~Y~yF~s 51 (206)
T 1vi0_A 10 YMQIIDAAVE----------VIAENGYHQSQVSKIAKQAGVADGTIYLYFKN 51 (206)
T ss_dssp HHHHHHHHHH----------HHHHHCGGGCCHHHHHHHHTSCHHHHHHHCSS
T ss_pred HHHHHHHHHH----------HHHHhCcccCCHHHHHHHhCCChhHHHHHcCC
Confidence 4577777777 33444566899999999999999999998864
No 258
>2wui_A MEXZ, transcriptional regulator; gene regulation, transcription regulation, TETR, DNA-binding transcription; 2.90A {Pseudomonas aeruginosa}
Probab=79.63 E-value=1.8 Score=32.23 Aligned_cols=43 Identities=7% Similarity=-0.036 Sum_probs=34.0
Q ss_pred hHHHHHHHHHHhCCCCCCchHHHHhhCCCCCCHHHHHHHhhhhhhhhhcccCC
Q 027234 160 LHQQFVSAVKELGFDKAGPKKILELMNIPGLTRENVASHLQKHRLYLSRLSGV 212 (226)
Q Consensus 160 l~~~Fi~~~~~~g~~~~~p~~I~~~~~~~~lt~~~va~~l~~~r~~l~r~~~~ 212 (226)
..++++.++.+ +...-.-.+.|+++||.+.|+|+..+|+-|+.
T Consensus 12 ~r~~Il~aA~~----------lf~~~G~~~~s~~~IA~~aGvskgtlY~~F~s 54 (210)
T 2wui_A 12 TRDGILDAAER----------VFLEKGVGTTAMADLADAAGVSRGAVYGHYKN 54 (210)
T ss_dssp HHHHHHHHHHH----------HHHHSCTTTCCHHHHHHHHTSCHHHHHHHCSS
T ss_pred HHHHHHHHHHH----------HHHHcCccccCHHHHHHHhCCCHHHHHHHcCC
Confidence 35678888888 33334556899999999999999999998864
No 259
>3vib_A MTRR; helix-turn-helix motif, DNA binding, DNA binding protein; HET: CXS; 2.40A {Neisseria gonorrhoeae}
Probab=79.54 E-value=1.9 Score=32.08 Aligned_cols=42 Identities=14% Similarity=-0.003 Sum_probs=33.5
Q ss_pred HHHHHHHHHHhCCCCCCchHHHHhhCCCCCCHHHHHHHhhhhhhhhhcccCC
Q 027234 161 HQQFVSAVKELGFDKAGPKKILELMNIPGLTRENVASHLQKHRLYLSRLSGV 212 (226)
Q Consensus 161 ~~~Fi~~~~~~g~~~~~p~~I~~~~~~~~lt~~~va~~l~~~r~~l~r~~~~ 212 (226)
.++++.++.+ +...-.-.+.|+++||.+.|+|+..+|+-|+.
T Consensus 12 R~~Il~aA~~----------lf~~~G~~~~s~~~IA~~aGvs~~t~Y~~F~s 53 (210)
T 3vib_A 12 KEHLMLAALE----------TFYRKGIARTSLNEIAQAAGVTRDALYWHFKN 53 (210)
T ss_dssp HHHHHHHHHH----------HHHHHCTTTCCHHHHHHHHTSCHHHHHHHCSS
T ss_pred HHHHHHHHHH----------HHHHhCcccCCHHHHHHHHCcCHHHHHHHCCC
Confidence 4567778777 44445566899999999999999999998764
No 260
>3jsj_A Putative TETR-family transcriptional regulator; DNA-binding, transcription regulation; 2.10A {Streptomyces avermitilis ma-4680}
Probab=79.54 E-value=1.8 Score=31.44 Aligned_cols=42 Identities=7% Similarity=0.034 Sum_probs=34.1
Q ss_pred hHHHHHHHHHHhCCCCCCchHHHHhhCCCCCCHHHHHHHhhhhhhhhhcccCC
Q 027234 160 LHQQFVSAVKELGFDKAGPKKILELMNIPGLTRENVASHLQKHRLYLSRLSGV 212 (226)
Q Consensus 160 l~~~Fi~~~~~~g~~~~~p~~I~~~~~~~~lt~~~va~~l~~~r~~l~r~~~~ 212 (226)
-.++++.++.+ ++..-.-. .|+++||.+.|+|+..+|+-|+.
T Consensus 10 ~r~~Il~aA~~----------lf~~~G~~-~t~~~IA~~aGvs~~tly~~F~s 51 (190)
T 3jsj_A 10 PRERLLEAAAA----------LTYRDGVG-IGVEALCKAAGVSKRSMYQLFES 51 (190)
T ss_dssp HHHHHHHHHHH----------HHHHHCTT-CCHHHHHHHHTCCHHHHHHHCSC
T ss_pred HHHHHHHHHHH----------HHHHhCcc-ccHHHHHHHhCCCHHHHHHHcCC
Confidence 35678888887 44445677 99999999999999999998874
No 261
>2zcx_A SCO7815, TETR-family transcriptional regulator; helix-turn-helix, DNA-binding, transcription regulation; 2.22A {Streptomyces coelicolor}
Probab=79.53 E-value=1.8 Score=33.11 Aligned_cols=44 Identities=18% Similarity=0.216 Sum_probs=35.0
Q ss_pred hhHHHHHHHHHHhCCCCCCchHHHHhhCCCCCCHHHHHHHhhhhhhhhhcccCC
Q 027234 159 ELHQQFVSAVKELGFDKAGPKKILELMNIPGLTRENVASHLQKHRLYLSRLSGV 212 (226)
Q Consensus 159 ~l~~~Fi~~~~~~g~~~~~p~~I~~~~~~~~lt~~~va~~l~~~r~~l~r~~~~ 212 (226)
.-.++++.++.. +...-.-.++|+++||.+.|+|+..+|+-|+.
T Consensus 23 ~~r~~Il~aA~~----------lf~~~G~~~~s~~~IA~~agvs~~tlY~~F~s 66 (231)
T 2zcx_A 23 QREEAILDAARE----------LGTERGIREITLTDIAATVGMHKSALLRYFET 66 (231)
T ss_dssp HHHHHHHHHHHH----------HHHHHCSTTCCHHHHHHHHTSCHHHHHHHCSS
T ss_pred HHHHHHHHHHHH----------HHHhCCcccCCHHHHHHHhCCCHHHHHHhCCC
Confidence 345678888887 44445666899999999999999999998864
No 262
>3qz6_A HPCH/HPAI aldolase; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.00A {Desulfitobacterium hafniense} SCOP: c.1.12.0
Probab=79.53 E-value=12 Score=29.46 Aligned_cols=82 Identities=11% Similarity=0.090 Sum_probs=56.7
Q ss_pred HHHHHHHHHhCCCCceEEEEccCCCCCCHHHHHHHHh--cCCCCcEEEEeccCCHHHHHHHHhCCcceEE-eCCCCHHHH
Q 027234 11 AEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVG--LEMDLPVIMMCAHGSKEVVMKGVTHDACDYL-TKPVRIEEL 87 (226)
Q Consensus 11 ~~eal~~l~~~~~~~DlVl~D~~mp~~dG~~l~~~l~--~~~~~pvI~ls~~~~~~~~~~a~~~ga~~yl-~KP~~~~~L 87 (226)
..+.++.+.... +|.|++|+.-...+.-.+...++ .....++++=....+...+..++..|+++.+ +|--+.+++
T Consensus 26 ~p~~~e~a~~~g--~D~vilDlEhav~~~~k~~~~l~a~~~~~~~~~VRVn~~~~~di~~~ld~G~~gI~lP~v~saed~ 103 (261)
T 3qz6_A 26 NPDIVRIYAEAG--LDYFIVDCEHAAYTFREINHLVSVAKNAGVSVLVRIPQVDRAHVQRLLDIGAEGFMIPGVQSAETM 103 (261)
T ss_dssp CTTHHHHHHHTT--CSEEEEESSSSCCCHHHHHHHHHHHHHHTCEEEEECSSCCHHHHHHHHHHTCCEEEETTCCSHHHH
T ss_pred CHHHHHHHhcCC--cCEEEEeccCCCCCHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHhcCCCEEEECCcCCHHHH
Confidence 345566666644 99999999987776666655553 2234555554444567788899999999865 555678888
Q ss_pred HHHHHHH
Q 027234 88 KNIWQHV 94 (226)
Q Consensus 88 ~~~l~~~ 94 (226)
......+
T Consensus 104 ~~~~~~~ 110 (261)
T 3qz6_A 104 RETVRLA 110 (261)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 8776654
No 263
>3bhq_A Transcriptional regulator; bacterial RE proteins, structural genomics, joint center for structural JCSG, protein structure initiative, PSI-2; HET: MSE; 1.54A {Mesorhizobium loti}
Probab=79.48 E-value=1.6 Score=32.47 Aligned_cols=43 Identities=9% Similarity=0.079 Sum_probs=34.4
Q ss_pred hHHHHHHHHHHhCCCCCCchHHHHhhCCCCCCHHHHHHHhhhhhhhhhcccCC
Q 027234 160 LHQQFVSAVKELGFDKAGPKKILELMNIPGLTRENVASHLQKHRLYLSRLSGV 212 (226)
Q Consensus 160 l~~~Fi~~~~~~g~~~~~p~~I~~~~~~~~lt~~~va~~l~~~r~~l~r~~~~ 212 (226)
..++++.++.+ +...-.-.+.|+++||.+.|+|+..+|+-|+.
T Consensus 13 ~r~~Il~aA~~----------lf~~~G~~~ts~~~IA~~aGvsk~tlY~~F~s 55 (211)
T 3bhq_A 13 KDREIIQAATA----------AFISKGYDGTSMEEIATKAGASKQTVYKHFTD 55 (211)
T ss_dssp HHHHHHHHHHH----------HHHHHCSTTCCHHHHHHHHTCCHHHHHHHHCS
T ss_pred HHHHHHHHHHH----------HHHHhCcccCCHHHHHHHhCCCHHHHHHHcCC
Confidence 35678888888 34444566899999999999999999998764
No 264
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=79.28 E-value=0.76 Score=30.42 Aligned_cols=47 Identities=17% Similarity=0.294 Sum_probs=31.8
Q ss_pred HHHHHHHHhCCCCCCchHHHHhhCCCCCCHHHHHHHhhhhhhhhhcc
Q 027234 163 QFVSAVKELGFDKAGPKKILELMNIPGLTRENVASHLQKHRLYLSRL 209 (226)
Q Consensus 163 ~Fi~~~~~~g~~~~~p~~I~~~~~~~~lt~~~va~~l~~~r~~l~r~ 209 (226)
.|......+|+....-..+.-+...++++..+||.++++++..++|.
T Consensus 8 ~~~~~l~~~~l~~~~~~il~~l~~~~~~s~~ela~~l~is~~tv~~~ 54 (109)
T 1sfx_A 8 ELVKALEKLSFKPSDVRIYSLLLERGGMRVSEIARELDLSARFVRDR 54 (109)
T ss_dssp HHHHHHHHTCCCHHHHHHHHHHHHHCCBCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHcCCCCHHHHHHHHCCCHHHHHHH
Confidence 44555666666543333333333456899999999999999988764
No 265
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=79.25 E-value=0.45 Score=28.68 Aligned_cols=31 Identities=6% Similarity=0.023 Sum_probs=24.8
Q ss_pred HHHhhCCCCCCHHHHHHHhhhhhhhhhcccC
Q 027234 181 ILELMNIPGLTRENVASHLQKHRLYLSRLSG 211 (226)
Q Consensus 181 I~~~~~~~~lt~~~va~~l~~~r~~l~r~~~ 211 (226)
|.+.+...++|..++|..+++++++++++..
T Consensus 10 l~~~r~~~g~s~~~lA~~~gis~~~i~~~e~ 40 (68)
T 2r1j_L 10 IRARRKKLKIRQAALGKMVGVSNVAISQWER 40 (68)
T ss_dssp HHHHHHHHTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHHHHHcCCCHHHHHHHHCCCHHHHHHHHc
Confidence 4444555589999999999999999998644
No 266
>3bjb_A Probable transcriptional regulator, TETR family P; APC7331, rhodococcus SP. RHA1, structural genomics, PS protein structure initiative; 2.50A {Rhodococcus SP}
Probab=79.25 E-value=1.3 Score=33.13 Aligned_cols=43 Identities=16% Similarity=0.061 Sum_probs=33.9
Q ss_pred hHHHHHHHHHHhCCCCCCchHHHHhhCCCCCCHHHHHHHhhhhhhhhhcccCC
Q 027234 160 LHQQFVSAVKELGFDKAGPKKILELMNIPGLTRENVASHLQKHRLYLSRLSGV 212 (226)
Q Consensus 160 l~~~Fi~~~~~~g~~~~~p~~I~~~~~~~~lt~~~va~~l~~~r~~l~r~~~~ 212 (226)
-.++++.++.+ +...-.-.+.|+++||.+.|+||..||+-|+.
T Consensus 23 ~r~~Il~AA~~----------lf~e~G~~~~s~~~IA~~AGVsk~tlY~~F~s 65 (207)
T 3bjb_A 23 RHVRMLEAAIE----------LATEKELARVQMHEVAKRAGVAIGTLYRYFPS 65 (207)
T ss_dssp HHHHHHHHHHH----------HHHHSCGGGCCHHHHHHHHTCCHHHHHHHCSS
T ss_pred HHHHHHHHHHH----------HHHHcCcccCCHHHHHHHhCCCHHHHHHHCCC
Confidence 35677888877 34444556789999999999999999998864
No 267
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=79.11 E-value=0.45 Score=29.81 Aligned_cols=30 Identities=20% Similarity=0.112 Sum_probs=23.0
Q ss_pred HHHhhCCCCCCHHHHHHHhhhhhhhhhccc
Q 027234 181 ILELMNIPGLTRENVASHLQKHRLYLSRLS 210 (226)
Q Consensus 181 I~~~~~~~~lt~~~va~~l~~~r~~l~r~~ 210 (226)
|.+.+...++|..++|..+++++++++++-
T Consensus 7 lk~~r~~~glsq~~lA~~~gis~~~i~~~e 36 (77)
T 2k9q_A 7 LKVERIRLSLTAKSVAEEMGISRQQLCNIE 36 (77)
T ss_dssp HHHHHHHHTCCHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHhCCCHHHHHHHH
Confidence 344444558899999999999999988863
No 268
>1g2h_A Transcriptional regulatory protein TYRR homolog; protein structure, , DNA-binding domain, helix- turn-helix motif; NMR {Haemophilus influenzae} SCOP: a.4.1.12
Probab=79.03 E-value=0.54 Score=28.40 Aligned_cols=20 Identities=10% Similarity=0.094 Sum_probs=17.9
Q ss_pred CCHHHHHHHhhhhhhhhhcc
Q 027234 190 LTRENVASHLQKHRLYLSRL 209 (226)
Q Consensus 190 lt~~~va~~l~~~r~~l~r~ 209 (226)
-++...|..||+||+.|||.
T Consensus 34 gn~~~aA~~LGIsr~tL~rk 53 (61)
T 1g2h_A 34 PSTRKLAQRLGVSHTAIANK 53 (61)
T ss_dssp CSHHHHHHHTTSCTHHHHHH
T ss_pred CCHHHHHHHhCCCHHHHHHH
Confidence 47899999999999999974
No 269
>1req_A Methylmalonyl-COA mutase; isomerase, intramolecular transferase; HET: B12 DCA; 2.00A {Propionibacterium freudenreichii subspshermanii} SCOP: c.1.19.1 c.23.6.1 PDB: 2req_A* 3req_A* 4req_A* 6req_A* 7req_A* 5req_A* 1e1c_A*
Probab=79.03 E-value=12 Score=34.10 Aligned_cols=92 Identities=14% Similarity=-0.005 Sum_probs=60.9
Q ss_pred CcEEEEE---CCHHHHHHHHHhCCCCceEEEEccCCCC-CC-HHHHHHHHhcC-C-CCcEEEEeccCCHHHHHHHHhCCc
Q 027234 2 GFSVTKC---NRAEIALDMLRTNKNGYDIVISDVHMPD-MD-GFKLLELVGLE-M-DLPVIMMCAHGSKEVVMKGVTHDA 74 (226)
Q Consensus 2 g~~V~~~---~~~~eal~~l~~~~~~~DlVl~D~~mp~-~d-G~~l~~~l~~~-~-~~pvI~ls~~~~~~~~~~a~~~ga 74 (226)
||+|..- .+.++.++.+.+.. +|+|.+...|.. +. .-++++.|+.. . +++ |++-+..-......+.+.|+
T Consensus 624 GfeVi~lG~~v~~eeiv~aA~e~~--adiVglSsl~~~~~~~~~~vi~~L~~~G~~~i~-VivGG~~p~~d~~~l~~~Ga 700 (727)
T 1req_A 624 GFDVDVGPLFQTPEETARQAVEAD--VHVVGVSSLAGGHLTLVPALRKELDKLGRPDIL-ITVGGVIPEQDFDELRKDGA 700 (727)
T ss_dssp TCEEEECCTTBCHHHHHHHHHHTT--CSEEEEEECSSCHHHHHHHHHHHHHHTTCTTSE-EEEEESCCGGGHHHHHHTTE
T ss_pred CeEEEeCCCCCCHHHHHHHHHHcC--CCEEEEeeecHhHHHHHHHHHHHHHhcCCCCCE-EEEcCCCccccHHHHHhCCC
Confidence 7888743 35788888888866 999999887754 22 34456666633 2 333 34444233333445678999
Q ss_pred ceEEeCCCCHHHHHHHHHHHHH
Q 027234 75 CDYLTKPVRIEELKNIWQHVVR 96 (226)
Q Consensus 75 ~~yl~KP~~~~~L~~~l~~~~~ 96 (226)
++|+..--+..++...+...+.
T Consensus 701 D~~f~~gt~~~e~a~~l~~~l~ 722 (727)
T 1req_A 701 VEIYTPGTVIPESAISLVKKLR 722 (727)
T ss_dssp EEEECTTCCHHHHHHHHHHHHH
T ss_pred CEEEcCCccHHHHHHHHHHHHH
Confidence 9999977788887777766654
No 270
>3eup_A Transcriptional regulator, TETR family; structural genomics, MCSG, protein structure initiative, midwest center for STRU genomics; 1.99A {Cytophaga hutchinsonii}
Probab=79.00 E-value=0.74 Score=33.86 Aligned_cols=43 Identities=5% Similarity=0.055 Sum_probs=33.5
Q ss_pred hHHHHHHHHHHhCCCCCCchHHHHhhCCCCCCHHHHHHHhhhhhhhhhcccCC
Q 027234 160 LHQQFVSAVKELGFDKAGPKKILELMNIPGLTRENVASHLQKHRLYLSRLSGV 212 (226)
Q Consensus 160 l~~~Fi~~~~~~g~~~~~p~~I~~~~~~~~lt~~~va~~l~~~r~~l~r~~~~ 212 (226)
-.++++.++.+ ++....-.++|+++||.+.|+|+..+|+-|+.
T Consensus 12 ~r~~Il~aA~~----------lf~~~G~~~~ti~~IA~~agvs~~t~Y~~F~s 54 (204)
T 3eup_A 12 TRQFIIESTAP----------VFNVKGLAGTSLTDLTEATNLTKGSIYGNFEN 54 (204)
T ss_dssp HHHHHHHHHHH----------HHHHHHHHHCCHHHHHHHHTCCHHHHTTTSSS
T ss_pred HHHHHHHHHHH----------HHHHcCcccCCHHHHHHHhCCCcHHHHHhCCC
Confidence 35677788777 33333455799999999999999999998874
No 271
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=78.96 E-value=0.3 Score=30.26 Aligned_cols=32 Identities=16% Similarity=0.227 Sum_probs=25.9
Q ss_pred HHHHhhCCCCCCHHHHHHHhhhhhhhhhcccC
Q 027234 180 KILELMNIPGLTRENVASHLQKHRLYLSRLSG 211 (226)
Q Consensus 180 ~I~~~~~~~~lt~~~va~~l~~~r~~l~r~~~ 211 (226)
.|.+.+...++|..++|..+++++++++++-.
T Consensus 12 ~l~~~r~~~glsq~~lA~~~gis~~~is~~e~ 43 (73)
T 3omt_A 12 RLKSVLAEKGKTNLWLTETLDKNKTTVSKWCT 43 (73)
T ss_dssp CHHHHHHHHTCCHHHHHHHTTCCHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 45555556699999999999999999998643
No 272
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A
Probab=78.84 E-value=1.6 Score=34.14 Aligned_cols=71 Identities=14% Similarity=0.177 Sum_probs=44.5
Q ss_pred CCcEEEEECCHHHHHHHHHhCCCCceEEEEccCCCCCCHHHHHHHHhcCCCCcEEEEeccCCHHHHHHHHhCCcceEEeC
Q 027234 1 MGFSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVGLEMDLPVIMMCAHGSKEVVMKGVTHDACDYLTK 80 (226)
Q Consensus 1 lg~~V~~~~~~~eal~~l~~~~~~~DlVl~D~~mp~~dG~~l~~~l~~~~~~pvI~ls~~~~~~~~~~a~~~ga~~yl~K 80 (226)
+|++|..+.+. .. ..+|++|+|..+|...+. ..++.++..... .....+...++.+
T Consensus 34 ~g~~v~~~~~~-------~~--~~~~~ii~d~~~~~~~~~-----------~~~i~~~~~~~~----~~~~~~~~~~~~~ 89 (254)
T 2ayx_A 34 SGIVVTTYEGQ-------EP--TPEDVLITDEVVSKKWQG-----------RAVVTFCRRHIG----IPLEKAPGEWVHS 89 (254)
T ss_dssp TTEEEEECSSC-------CC--CTTCEEEEESSCSCCCCS-----------SEEEEECSSCCC----SCCTTSTTEEEEC
T ss_pred CCCEEEEecCC-------CC--CcCcEEEEcCCCcccccc-----------ceEEEEecccCC----CcccccCCceecc
Confidence 46777666531 12 348999999999876442 124555543211 0112345678999
Q ss_pred CCCHHHHHHHHHHHH
Q 027234 81 PVRIEELKNIWQHVV 95 (226)
Q Consensus 81 P~~~~~L~~~l~~~~ 95 (226)
|+...++...+.++.
T Consensus 90 ~~~~~~l~~~l~~~~ 104 (254)
T 2ayx_A 90 VAAPHELPALLARIY 104 (254)
T ss_dssp SSCCSHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHh
Confidence 999988888777765
No 273
>3q0w_A HTH-type transcriptional regulator EThr; TETR family, transcriptional repressor, transcription-transc inhibitor complex; HET: LL5; 1.60A {Mycobacterium tuberculosis} PDB: 3o8g_A* 3o8h_A* 3q0u_A* 3q0v_A* 3g1m_A* 3q3s_A* 3sdg_A* 3sfi_A* 1u9n_A* 1u9o_A* 3tp3_A 3qpl_A 3g1l_A* 1t56_A 3tp0_A*
Probab=78.77 E-value=1.3 Score=33.73 Aligned_cols=44 Identities=9% Similarity=0.081 Sum_probs=35.0
Q ss_pred hhHHHHHHHHHHhCCCCCCchHHHHhhCCCCCCHHHHHHHhhhhhhhhhcccCC
Q 027234 159 ELHQQFVSAVKELGFDKAGPKKILELMNIPGLTRENVASHLQKHRLYLSRLSGV 212 (226)
Q Consensus 159 ~l~~~Fi~~~~~~g~~~~~p~~I~~~~~~~~lt~~~va~~l~~~r~~l~r~~~~ 212 (226)
.-.++++.++.+ ++..-...++|+++||.+.++|+..||+-|+.
T Consensus 44 ~~r~~Il~aA~~----------lf~e~G~~~~t~~~IA~~aGvs~~tlY~~F~s 87 (236)
T 3q0w_A 44 DRELAILATAEN----------LLEDRPLADISVDDLAKGAGISRPTFYFYFPS 87 (236)
T ss_dssp HHHHHHHHHHHH----------HHHHSCGGGCCHHHHHHHHTCCHHHHHHHCSS
T ss_pred HHHHHHHHHHHH----------HHHHcCcccCCHHHHHHHhCCcHHHHHHHCCC
Confidence 445678888888 34444556899999999999999999998874
No 274
>1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1
Probab=78.76 E-value=13 Score=28.31 Aligned_cols=80 Identities=15% Similarity=0.145 Sum_probs=51.0
Q ss_pred CHHHHHHHHHhCCCCceEEE-EccCCCCC---CHHHHHHHHhcCCCCcEEEEeccCCHHHHHHHHhCCcceEEe------
Q 027234 10 RAEIALDMLRTNKNGYDIVI-SDVHMPDM---DGFKLLELVGLEMDLPVIMMCAHGSKEVVMKGVTHDACDYLT------ 79 (226)
Q Consensus 10 ~~~eal~~l~~~~~~~DlVl-~D~~mp~~---dG~~l~~~l~~~~~~pvI~ls~~~~~~~~~~a~~~ga~~yl~------ 79 (226)
+..+.++.+.+.. +|.|+ .++.-.++ -.++.++.++...++|+++-.+-...+.+.+++..||++.+.
T Consensus 155 ~~~e~~~~~~~~G--~d~i~~~~~~~~g~~~~~~~~~i~~l~~~~~~pvia~GGi~~~~~~~~~~~~Ga~~v~vgsal~~ 232 (253)
T 1h5y_A 155 DAVKWAKEVEELG--AGEILLTSIDRDGTGLGYDVELIRRVADSVRIPVIASGGAGRVEHFYEAAAAGADAVLAASLFHF 232 (253)
T ss_dssp EHHHHHHHHHHHT--CSEEEEEETTTTTTCSCCCHHHHHHHHHHCSSCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHT
T ss_pred CHHHHHHHHHhCC--CCEEEEecccCCCCcCcCCHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHcCCcHHHHHHHHHc
Confidence 3445455554433 67765 44432111 146777877755688999888877778888899999999874
Q ss_pred CCCCHHHHHHHH
Q 027234 80 KPVRIEELKNIW 91 (226)
Q Consensus 80 KP~~~~~L~~~l 91 (226)
.+.+..++...+
T Consensus 233 ~~~~~~~~~~~l 244 (253)
T 1h5y_A 233 RVLSIAQVKRYL 244 (253)
T ss_dssp TSSCHHHHHHHH
T ss_pred CCCCHHHHHHHH
Confidence 355555554443
No 275
>2hyt_A TETR-family transcriptional regulator; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.64A {Pectobacterium atrosepticum}
Probab=78.74 E-value=1.7 Score=32.00 Aligned_cols=43 Identities=7% Similarity=0.111 Sum_probs=34.0
Q ss_pred hHHHHHHHHHHhCCCCCCchHHHHhhCCCCCCHHHHHHHhhhhhhhhhcccCC
Q 027234 160 LHQQFVSAVKELGFDKAGPKKILELMNIPGLTRENVASHLQKHRLYLSRLSGV 212 (226)
Q Consensus 160 l~~~Fi~~~~~~g~~~~~p~~I~~~~~~~~lt~~~va~~l~~~r~~l~r~~~~ 212 (226)
..++++.++.+ +...-.-.+.|+++||.+.|+|+..+|+-|+.
T Consensus 13 ~r~~Il~aA~~----------lf~~~G~~~~s~~~IA~~aGvs~~tlY~~F~s 55 (197)
T 2hyt_A 13 TRATLLATARK----------VFSERGYADTSMDDLTAQASLTRGALYHHFGD 55 (197)
T ss_dssp HHHHHHHHHHH----------HHHHHCTTTCCHHHHHHHHTCCTTHHHHHHSS
T ss_pred HHHHHHHHHHH----------HHHHhCcccCCHHHHHHHhCCCHHHHHHHcCC
Confidence 34677888877 44444566899999999999999999998764
No 276
>1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1
Probab=78.64 E-value=12 Score=28.77 Aligned_cols=69 Identities=14% Similarity=0.043 Sum_probs=48.9
Q ss_pred CHHHHHHHHHhCCCCce-EEEEccCCCCCC---HHHHHHHHhcCCCCcEEEEeccCCHHHHHHHHhCCcceEEeC
Q 027234 10 RAEIALDMLRTNKNGYD-IVISDVHMPDMD---GFKLLELVGLEMDLPVIMMCAHGSKEVVMKGVTHDACDYLTK 80 (226)
Q Consensus 10 ~~~eal~~l~~~~~~~D-lVl~D~~mp~~d---G~~l~~~l~~~~~~pvI~ls~~~~~~~~~~a~~~ga~~yl~K 80 (226)
+..+..+.+.... .| +.+.|....+.. -+++++.+++..++|+++.....+.+.+..++..||++.+.=
T Consensus 32 d~~~~a~~~~~~G--ad~i~v~d~~~~~~~~~~~~~~i~~i~~~~~iPvi~~Ggi~~~~~~~~~~~~Gad~V~lg 104 (252)
T 1ka9_F 32 DPVEAARAYDEAG--ADELVFLDISATHEERAILLDVVARVAERVFIPLTVGGGVRSLEDARKLLLSGADKVSVN 104 (252)
T ss_dssp CHHHHHHHHHHHT--CSCEEEEECCSSTTCHHHHHHHHHHHHTTCCSCEEEESSCCSHHHHHHHHHHTCSEEEEC
T ss_pred CHHHHHHHHHHcC--CCEEEEEcCCccccCccccHHHHHHHHHhCCCCEEEECCcCCHHHHHHHHHcCCCEEEEC
Confidence 5556665655533 55 445676543322 245677777777899999998888999999999999987753
No 277
>1jhg_A Trp operon repressor; complex (regulatory protein-peptide), DNA-binding regulatory complex (regulatory protein-peptide) complex; HET: TRP; 1.30A {Escherichia coli} SCOP: a.4.12.1 PDB: 1co0_A* 1mi7_R 1p6z_R 1wrp_R* 1zt9_A* 2oz9_R* 3ssw_R 3wrp_A 1rcs_A* 1wrs_R* 1wrt_R 2xdi_A 3ssx_R* 1trr_A* 1tro_A*
Probab=78.59 E-value=0.55 Score=31.71 Aligned_cols=26 Identities=12% Similarity=0.096 Sum_probs=22.0
Q ss_pred hCCCCCCHHHHHHHhhhhhhhhhccc
Q 027234 185 MNIPGLTRENVASHLQKHRLYLSRLS 210 (226)
Q Consensus 185 ~~~~~lt~~~va~~l~~~r~~l~r~~ 210 (226)
+.....|..+||..+|+|++|..|+.
T Consensus 54 L~~ge~TQREIA~~lGiS~stISRi~ 79 (101)
T 1jhg_A 54 LLRGEMSQRELKNELGAGIATITRGS 79 (101)
T ss_dssp HHHCCSCHHHHHHHHCCCHHHHHHHH
T ss_pred HHcCCcCHHHHHHHHCCChhhhhHHH
Confidence 33435999999999999999999974
No 278
>2gen_A Probable transcriptional regulator; APC6095, TETR family, structural genomics, PSI, protein structure initiative; 1.70A {Pseudomonas aeruginosa PAO1} SCOP: a.4.1.9 a.121.1.1
Probab=78.48 E-value=2 Score=31.68 Aligned_cols=42 Identities=12% Similarity=0.008 Sum_probs=33.4
Q ss_pred HHHHHHHHHHhCCCCCCchHHHHhhCCCCCCHHHHHHHhhhhhhhhhcccCC
Q 027234 161 HQQFVSAVKELGFDKAGPKKILELMNIPGLTRENVASHLQKHRLYLSRLSGV 212 (226)
Q Consensus 161 ~~~Fi~~~~~~g~~~~~p~~I~~~~~~~~lt~~~va~~l~~~r~~l~r~~~~ 212 (226)
.++++.++.+ +...-.-.+.|+++||.+.|+|+..+|+-|+.
T Consensus 9 r~~Il~aA~~----------lf~~~G~~~ts~~~IA~~aGvs~gtlY~~F~s 50 (197)
T 2gen_A 9 KDEILQAALA----------CFSEHGVDATTIEMIRDRSGASIGSLYHHFGN 50 (197)
T ss_dssp HHHHHHHHHH----------HHHHHCTTTCCHHHHHHHHCCCHHHHHHHTCS
T ss_pred HHHHHHHHHH----------HHHHcCcccCCHHHHHHHHCCChHHHHHHCCC
Confidence 4677777777 33444566899999999999999999998864
No 279
>1z4h_A TORI, TOR inhibition protein; winged helix, reverse turn, protein binding, DNA binding protein; NMR {Escherichia coli}
Probab=78.48 E-value=0.52 Score=28.93 Aligned_cols=26 Identities=0% Similarity=-0.151 Sum_probs=21.7
Q ss_pred hCCCCCCHHHHHHHhhhhhhhhhccc
Q 027234 185 MNIPGLTRENVASHLQKHRLYLSRLS 210 (226)
Q Consensus 185 ~~~~~lt~~~va~~l~~~r~~l~r~~ 210 (226)
+...-++..+||..|++||+.+|+.-
T Consensus 6 ~~~~~l~~~eva~~lgvsrstiy~~~ 31 (66)
T 1z4h_A 6 QPDSLVDLKFIMADTGFGKTFIYDRI 31 (66)
T ss_dssp CSSSEECHHHHHHHHSSCHHHHHHHH
T ss_pred ccccccCHHHHHHHHCcCHHHHHHHH
Confidence 34556899999999999999999853
No 280
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=78.35 E-value=19 Score=28.25 Aligned_cols=86 Identities=14% Similarity=0.153 Sum_probs=54.2
Q ss_pred CcEEEE---ECCHHHHHHHHHhCCCCceEEEEccCCCC-CCH-HHHHHHHhc-CCCCcEEEEeccCCHHHHHHHHhCCcc
Q 027234 2 GFSVTK---CNRAEIALDMLRTNKNGYDIVISDVHMPD-MDG-FKLLELVGL-EMDLPVIMMCAHGSKEVVMKGVTHDAC 75 (226)
Q Consensus 2 g~~V~~---~~~~~eal~~l~~~~~~~DlVl~D~~mp~-~dG-~~l~~~l~~-~~~~pvI~ls~~~~~~~~~~a~~~ga~ 75 (226)
||+|.. .-..++..+.+.+.. ||+|.+...|+. +.. -++++.++. .+.+||++=-.....+.. -..|++
T Consensus 151 G~~Vi~LG~~vp~e~l~~~~~~~~--~d~V~lS~l~~~~~~~~~~~i~~l~~~~~~~~v~vGG~~~~~~~~---~~igad 225 (258)
T 2i2x_B 151 GYNVVDLGRDVPAEEVLAAVQKEK--PIMLTGTALMTTTMYAFKEVNDMLLENGIKIPFACGGGAVNQDFV---SQFALG 225 (258)
T ss_dssp TCEEEEEEEECCSHHHHHHHHHHC--CSEEEEECCCTTTTTHHHHHHHHHHTTTCCCCEEEESTTCCHHHH---HTSTTE
T ss_pred CCEEEECCCCCCHHHHHHHHHHcC--CCEEEEEeeccCCHHHHHHHHHHHHhcCCCCcEEEECccCCHHHH---HHcCCe
Confidence 788753 346778888888876 999999988764 443 345677763 456777654444444432 377988
Q ss_pred eEEeCCCCHHHHHHHHHHHH
Q 027234 76 DYLTKPVRIEELKNIWQHVV 95 (226)
Q Consensus 76 ~yl~KP~~~~~L~~~l~~~~ 95 (226)
.|-.-. .+....++.++
T Consensus 226 ~~~~da---~~av~~~~~l~ 242 (258)
T 2i2x_B 226 VYGEEA---ADAPKIADAII 242 (258)
T ss_dssp EECSST---THHHHHHHHHH
T ss_pred EEECCH---HHHHHHHHHHH
Confidence 776544 34444444444
No 281
>3fmy_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, DNA-binding, transcription regulation, DNA binding protein; HET: MEQ; 1.40A {Escherichia coli k-12}
Probab=78.34 E-value=0.62 Score=29.02 Aligned_cols=33 Identities=18% Similarity=0.198 Sum_probs=26.4
Q ss_pred CchHHHHhhCCCCCCHHHHHHHhhhhhhhhhcc
Q 027234 177 GPKKILELMNIPGLTRENVASHLQKHRLYLSRL 209 (226)
Q Consensus 177 ~p~~I~~~~~~~~lt~~~va~~l~~~r~~l~r~ 209 (226)
.+..|.+....-++|.+++|..+++|+++++++
T Consensus 12 ~g~~lr~~R~~~gltq~elA~~~gvs~~tis~~ 44 (73)
T 3fmy_A 12 APEFIVKVRKKLSLTQKEASEIFGGGVNAFSRY 44 (73)
T ss_dssp CHHHHHHHHHHTTCCHHHHHHHHCSCTTHHHHH
T ss_pred CHHHHHHHHHHcCCCHHHHHHHhCcCHHHHHHH
Confidence 344566666667999999999999999998875
No 282
>3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8}
Probab=78.14 E-value=11 Score=30.79 Aligned_cols=70 Identities=19% Similarity=0.176 Sum_probs=51.7
Q ss_pred EECCHHHHHHHHHhCCCCceEEEEccCCC-C----CCHHHHHHHHhcCCCCcEEEEeccCCHHHHHHHHhCCcceEEe
Q 027234 7 KCNRAEIALDMLRTNKNGYDIVISDVHMP-D----MDGFKLLELVGLEMDLPVIMMCAHGSKEVVMKGVTHDACDYLT 79 (226)
Q Consensus 7 ~~~~~~eal~~l~~~~~~~DlVl~D~~mp-~----~dG~~l~~~l~~~~~~pvI~ls~~~~~~~~~~a~~~ga~~yl~ 79 (226)
.+.+.++|....+. ++|.|+++-.-+ + ...++++..++...++|||+-.+-.+.+.+.+++.+||++...
T Consensus 130 ~v~s~~~a~~a~~~---GaD~i~v~g~~~GG~~G~~~~~~ll~~i~~~~~iPviaaGGI~~~~dv~~al~~GA~gV~v 204 (326)
T 3bo9_A 130 VVASDSLARMVERA---GADAVIAEGMESGGHIGEVTTFVLVNKVSRSVNIPVIAAGGIADGRGMAAAFALGAEAVQM 204 (326)
T ss_dssp EESSHHHHHHHHHT---TCSCEEEECTTSSEECCSSCHHHHHHHHHHHCSSCEEEESSCCSHHHHHHHHHHTCSEEEE
T ss_pred EcCCHHHHHHHHHc---CCCEEEEECCCCCccCCCccHHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHhCCCEEEe
Confidence 46777777766553 378888864222 2 3467888888755689999888888899999999999999774
No 283
>3e7q_A Transcriptional regulator; structural genomics, PSI, MCSG, P structure initiative, midwest center for structural genomic binding; 2.20A {Pseudomonas aeruginosa}
Probab=78.12 E-value=0.69 Score=34.32 Aligned_cols=43 Identities=7% Similarity=0.018 Sum_probs=33.7
Q ss_pred hHHHHHHHHHHhCCCCCCchHHHHhhCCCCCCHHHHHHHhhhhhhhhhcccCC
Q 027234 160 LHQQFVSAVKELGFDKAGPKKILELMNIPGLTRENVASHLQKHRLYLSRLSGV 212 (226)
Q Consensus 160 l~~~Fi~~~~~~g~~~~~p~~I~~~~~~~~lt~~~va~~l~~~r~~l~r~~~~ 212 (226)
-.++++.++.+ ++..-.-.++|+++||.+.|+|+..+|+-|+.
T Consensus 15 ~r~~Il~aa~~----------l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~s 57 (215)
T 3e7q_A 15 RKALLIEATLA----------CLKRHGFQGASVRKICAEAGVSVGLINHHYDG 57 (215)
T ss_dssp HHHHHHHHHHH----------HHHHHHHHHCCHHHHHHHHTCCHHHHHHHCSS
T ss_pred HHHHHHHHHHH----------HHHHcCcccCCHHHHHHHhCCCHHHHHHHcCC
Confidence 35678888887 33333445899999999999999999998874
No 284
>4aci_A HTH-type transcriptional repressor ACNR; aconitase, citrate, TETR superfamily; HET: CIT; 1.65A {Corynebacterium glutamicum} PDB: 4ac6_A*
Probab=78.07 E-value=0.61 Score=34.11 Aligned_cols=43 Identities=14% Similarity=0.094 Sum_probs=33.2
Q ss_pred hHHHHHHHHHHhCCCCCCchHHHHhhCCCCCCHHHHHHHhhhhhhhhhcccCC
Q 027234 160 LHQQFVSAVKELGFDKAGPKKILELMNIPGLTRENVASHLQKHRLYLSRLSGV 212 (226)
Q Consensus 160 l~~~Fi~~~~~~g~~~~~p~~I~~~~~~~~lt~~~va~~l~~~r~~l~r~~~~ 212 (226)
..++++.++.+ ++..-.-.+.|+++||.+.|+||..||+-|+.
T Consensus 15 ~r~~Il~aA~~----------l~~~~G~~~~t~~~IA~~agvs~~t~Y~~F~s 57 (191)
T 4aci_A 15 SRQEILEGARR----------CFAEHGYEGATVRRLEEATGKSRGAIFHHFGD 57 (191)
T ss_dssp HHHHHHHHHHH----------HHHHHHHHHCCHHHHHHHHTCCHHHHHHHHSS
T ss_pred HHHHHHHHHHH----------HHHHhCcccCCHHHHHHHHCCCchHHHHHCCC
Confidence 35677777777 33333445799999999999999999998864
No 285
>2nx4_A Transcriptional regulator, TETR family protein; HTH DNA binding motif, structural genomics, PSI-2, Pro structure initiative; 1.70A {Rhodococcus SP}
Probab=78.02 E-value=2.2 Score=31.33 Aligned_cols=42 Identities=12% Similarity=0.072 Sum_probs=33.7
Q ss_pred HHHHHHHHHHhCCCCCCchHHHHhhCCCCCCHHHHHHHhhhhhhhhhcccCC
Q 027234 161 HQQFVSAVKELGFDKAGPKKILELMNIPGLTRENVASHLQKHRLYLSRLSGV 212 (226)
Q Consensus 161 ~~~Fi~~~~~~g~~~~~p~~I~~~~~~~~lt~~~va~~l~~~r~~l~r~~~~ 212 (226)
.++++.++.+ +...-.-.+.|+++||.+.|+|+..+|+-|+.
T Consensus 12 r~~Il~aA~~----------lf~~~G~~~~s~~~IA~~aGvs~gtlY~yF~s 53 (194)
T 2nx4_A 12 RRSITAAAWR----------LIAARGIEAANMRDIATEAGYTNGALSHYFAG 53 (194)
T ss_dssp HHHHHHHHHH----------HHHHHCTTTCCHHHHHHHHTCCHHHHHHHCSS
T ss_pred HHHHHHHHHH----------HHHhcCcccCCHHHHHHHhCCCcchHHHhCcC
Confidence 4678888887 33444566899999999999999999998864
No 286
>2g7g_A RHA04620, putative transcriptional regulator; helix-turn-helix, structural genomics, PSI, protein structur initiative; 2.01A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=77.94 E-value=2.1 Score=32.40 Aligned_cols=40 Identities=13% Similarity=0.080 Sum_probs=32.6
Q ss_pred HHHHHHHHHHhCCCCCCchHHHHhhCCCCCCHHHHHHHhhhhhhhhhcccCC
Q 027234 161 HQQFVSAVKELGFDKAGPKKILELMNIPGLTRENVASHLQKHRLYLSRLSGV 212 (226)
Q Consensus 161 ~~~Fi~~~~~~g~~~~~p~~I~~~~~~~~lt~~~va~~l~~~r~~l~r~~~~ 212 (226)
.++++.++.+ .+.+. . ++|+..||.++++++..||+-|+.
T Consensus 13 r~~Il~aA~~---------l~~~~-G--~~s~~~IA~~aGvs~~tlY~hF~~ 52 (213)
T 2g7g_A 13 RERIAEAALE---------LVDRD-G--DFRMPDLARHLNVQVSSIYHHAKG 52 (213)
T ss_dssp HHHHHHHHHH---------HHHHH-S--SCCHHHHHHHTTSCHHHHHTTSCH
T ss_pred HHHHHHHHHH---------HHHHc-C--CCCHHHHHHHhCCCHhHHHHHcCC
Confidence 5678888888 24444 4 999999999999999999998863
No 287
>3c2b_A Transcriptional regulator, TETR family; structural genomics, APC5923, PSI-2, PR structure initiative; 2.10A {Agrobacterium tumefaciens str}
Probab=77.92 E-value=1.3 Score=33.09 Aligned_cols=42 Identities=14% Similarity=0.067 Sum_probs=33.3
Q ss_pred HHHHHHHHHHhCCCCCCchHHHHhhCCCCCCHHHHHHHhhhhhhhhhcccCC
Q 027234 161 HQQFVSAVKELGFDKAGPKKILELMNIPGLTRENVASHLQKHRLYLSRLSGV 212 (226)
Q Consensus 161 ~~~Fi~~~~~~g~~~~~p~~I~~~~~~~~lt~~~va~~l~~~r~~l~r~~~~ 212 (226)
.++++.++.+ ++..-.-.+.|+++||.+.++|+..+|+-|+.
T Consensus 17 r~~Il~aA~~----------lf~~~G~~~~s~~~IA~~agvs~~t~Y~~F~s 58 (221)
T 3c2b_A 17 QNAVLDQALR----------LLVEGGEKALTTSGLARAANCSKESLYKWFGD 58 (221)
T ss_dssp HHHHHHHHHH----------HHHHHCGGGCCHHHHHHHHTCCHHHHHHHHSS
T ss_pred HHHHHHHHHH----------HHHhCCcccCCHHHHHHHhCCCHHHHHHhCCC
Confidence 4577777777 33444566899999999999999999998764
No 288
>2id3_A Putative transcriptional regulator; structural genomics, PSI-2, prote structure initiative; 1.70A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=77.69 E-value=1.4 Score=33.43 Aligned_cols=44 Identities=14% Similarity=0.132 Sum_probs=34.6
Q ss_pred hhHHHHHHHHHHhCCCCCCchHHHHhhCCCCCCHHHHHHHhhhhhhhhhcccCC
Q 027234 159 ELHQQFVSAVKELGFDKAGPKKILELMNIPGLTRENVASHLQKHRLYLSRLSGV 212 (226)
Q Consensus 159 ~l~~~Fi~~~~~~g~~~~~p~~I~~~~~~~~lt~~~va~~l~~~r~~l~r~~~~ 212 (226)
...++++.++.+ ++..-.-.+.|+++||.+.++|+..||+-|+.
T Consensus 40 ~~r~~Il~aA~~----------lf~~~G~~~~t~~~IA~~Agvs~~t~Y~~F~s 83 (225)
T 2id3_A 40 RIREAVLLAAGD----------ALAADGFDALDLGEIARRAGVGKTTVYRRWGT 83 (225)
T ss_dssp HHHHHHHHHHHH----------HHHHHCGGGCCHHHHHHHHTCCHHHHHHHHCS
T ss_pred HHHHHHHHHHHH----------HHHHhCcccCCHHHHHHHHCCCHHHHHHHCCC
Confidence 345678888887 33444566899999999999999999998864
No 289
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=77.41 E-value=0.54 Score=29.05 Aligned_cols=31 Identities=6% Similarity=0.023 Sum_probs=23.7
Q ss_pred HHHhhCCCCCCHHHHHHHhhhhhhhhhcccC
Q 027234 181 ILELMNIPGLTRENVASHLQKHRLYLSRLSG 211 (226)
Q Consensus 181 I~~~~~~~~lt~~~va~~l~~~r~~l~r~~~ 211 (226)
|.+.+...++|..++|..+++++++++++..
T Consensus 10 l~~~r~~~gls~~~lA~~~gis~~~i~~~e~ 40 (76)
T 1adr_A 10 IRARRKKLKIRQAALGKMVGVSNVAISQWER 40 (76)
T ss_dssp HHHHHHHHTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHHHHHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 4444444589999999999999999888643
No 290
>2np5_A Transcriptional regulator; TETR family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE LMT NDS; 1.80A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=77.34 E-value=1.6 Score=32.38 Aligned_cols=42 Identities=10% Similarity=0.060 Sum_probs=33.4
Q ss_pred HHHHHHHHHHhCCCCCCchHHHHhhCCCCCCHHHHHHHhhhhhhhhhcccCC
Q 027234 161 HQQFVSAVKELGFDKAGPKKILELMNIPGLTRENVASHLQKHRLYLSRLSGV 212 (226)
Q Consensus 161 ~~~Fi~~~~~~g~~~~~p~~I~~~~~~~~lt~~~va~~l~~~r~~l~r~~~~ 212 (226)
.++++.++.+ +...-.-.+.|+++||.+.|+|+..+|+-|+.
T Consensus 11 r~~Il~AA~~----------lf~~~G~~~~s~~~IA~~AGvs~gtlY~~F~s 52 (203)
T 2np5_A 11 PERLAAALFD----------VAAESGLEGASVREVAKRAGVSIGAVQHHFST 52 (203)
T ss_dssp HHHHHHHHHH----------HHHHHCGGGCCHHHHHHHHTCCHHHHHHHCSS
T ss_pred HHHHHHHHHH----------HHHHhChhhccHHHHHHHhCCCHHHHHHHcCC
Confidence 4677888877 33334556899999999999999999998864
No 291
>2opt_A Actii protein; helical protein, TETR family, APO-protein, transcriptional R transcription; 2.05A {Streptomyces coelicolor} PDB: 3b6a_A* 3b6c_A*
Probab=77.23 E-value=1.4 Score=34.09 Aligned_cols=42 Identities=19% Similarity=0.234 Sum_probs=32.8
Q ss_pred HHHHHHHHHHhCCCCCCchHHHHhhCCCCCCHHHHHHHhhhhhhhhhcccCC
Q 027234 161 HQQFVSAVKELGFDKAGPKKILELMNIPGLTRENVASHLQKHRLYLSRLSGV 212 (226)
Q Consensus 161 ~~~Fi~~~~~~g~~~~~p~~I~~~~~~~~lt~~~va~~l~~~r~~l~r~~~~ 212 (226)
.++++.++.. ++..-...++|+..||.++++++..||+-|+.
T Consensus 8 r~~Il~AA~~----------l~~~~G~~~~S~r~IA~~aGvs~~tlY~hF~~ 49 (234)
T 2opt_A 8 QDRIVVTALG----------ILDAEGLDALSMRRLAQELKTGHASLYAHVGN 49 (234)
T ss_dssp HHHHHHHHHH----------HHHHHCGGGCCHHHHHHHHTCCHHHHHHHHCS
T ss_pred HHHHHHHHHH----------HHHhCCccccCHHHHHHHHCCChhHHHHHcCC
Confidence 4566677766 44444566899999999999999999997764
No 292
>3mnl_A KSTR, transcriptional regulatory protein (probably TETR; TETR family of transcriptional regulator, all-helical; 1.80A {Mycobacterium tuberculosis}
Probab=77.21 E-value=0.76 Score=33.84 Aligned_cols=43 Identities=14% Similarity=0.004 Sum_probs=33.4
Q ss_pred hHHHHHHHHHHhCCCCCCchHHHHhhCCCCCCHHHHHHHhhhhhhhhhcccCC
Q 027234 160 LHQQFVSAVKELGFDKAGPKKILELMNIPGLTRENVASHLQKHRLYLSRLSGV 212 (226)
Q Consensus 160 l~~~Fi~~~~~~g~~~~~p~~I~~~~~~~~lt~~~va~~l~~~r~~l~r~~~~ 212 (226)
..++++.++.. ++......++|+++||.+.|+||..||+-|+.
T Consensus 21 ~r~~Il~aA~~----------l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~~ 63 (203)
T 3mnl_A 21 RRKRILDATMA----------IASKGGYEAVQMRAVADRADVAVGTLYRYFPS 63 (203)
T ss_dssp HHHHHHHHHHH----------HHHHHHHHHCCHHHHHHHHTCCHHHHHHHCSS
T ss_pred HHHHHHHHHHH----------HHHHcCCccCCHHHHHHHcCCChhHHHHHcCC
Confidence 35677777777 33334455799999999999999999998864
No 293
>3c07_A Putative TETR-family transcriptional regulator; APC6322, structural GEN PSI-2, protein structure initiative; 2.70A {Streptomyces coelicolor A3} SCOP: a.4.1.9 a.121.1.1 PDB: 2ofl_A*
Probab=77.04 E-value=2.3 Score=33.50 Aligned_cols=44 Identities=5% Similarity=-0.109 Sum_probs=34.8
Q ss_pred hhHHHHHHHHHHhCCCCCCchHHHHhhCCCCCCHHHHHHHhhhhhhhhhcccCC
Q 027234 159 ELHQQFVSAVKELGFDKAGPKKILELMNIPGLTRENVASHLQKHRLYLSRLSGV 212 (226)
Q Consensus 159 ~l~~~Fi~~~~~~g~~~~~p~~I~~~~~~~~lt~~~va~~l~~~r~~l~r~~~~ 212 (226)
...++++.++.+ ++..-...++|+++||.+.++++..||+-|+.
T Consensus 41 ~tr~~Il~AA~~----------lf~e~G~~~~S~~~IA~~AGVs~~tlY~hF~s 84 (273)
T 3c07_A 41 QTRALILETAMR----------LFQERGYDRTTMRAIAQEAGVSVGNAYYYFAG 84 (273)
T ss_dssp HHHHHHHHHHHH----------HHHHTCSTTCCHHHHHHHHTSCHHHHHHHCSS
T ss_pred HHHHHHHHHHHH----------HHHhCCccccCHHHHHHHHCCCHHHHHHHcCC
Confidence 345678888877 44445566899999999999999999998864
No 294
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=76.91 E-value=0.57 Score=29.00 Aligned_cols=32 Identities=19% Similarity=0.163 Sum_probs=26.0
Q ss_pred HHHHhhCCCCCCHHHHHHHhhhhhhhhhcccC
Q 027234 180 KILELMNIPGLTRENVASHLQKHRLYLSRLSG 211 (226)
Q Consensus 180 ~I~~~~~~~~lt~~~va~~l~~~r~~l~r~~~ 211 (226)
.|.+.+...++|..++|..+++++++++++..
T Consensus 14 ~l~~~r~~~g~s~~~lA~~~gis~~~i~~~e~ 45 (76)
T 3bs3_A 14 RIKVVLAEKQRTNRWLAEQMGKSENTISRWCS 45 (76)
T ss_dssp CHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 45556666699999999999999999988644
No 295
>2hxi_A Putative transcriptional regulator; structural genomics, APC6293, TET streptomyces coelicolor A3(2), PSI-2; 1.70A {Streptomyces coelicolor}
Probab=76.88 E-value=1.7 Score=33.70 Aligned_cols=42 Identities=19% Similarity=0.146 Sum_probs=33.6
Q ss_pred HHHHHHHHHHhCCCCCCchHHHHhhCCCCCCHHHHHHHhhhhhhhhhcccCC
Q 027234 161 HQQFVSAVKELGFDKAGPKKILELMNIPGLTRENVASHLQKHRLYLSRLSGV 212 (226)
Q Consensus 161 ~~~Fi~~~~~~g~~~~~p~~I~~~~~~~~lt~~~va~~l~~~r~~l~r~~~~ 212 (226)
.++++.++.+ ++..-...++|+..||.++++++..||+-|+.
T Consensus 31 r~~Il~aA~~----------l~~~~G~~~~s~~~IA~~aGvs~~tlY~hF~~ 72 (241)
T 2hxi_A 31 TEQILDAAAE----------LLLAGDAETFSVRKLAASLGTDSSSLYRHFRN 72 (241)
T ss_dssp HHHHHHHHHH----------HHSSSSCCCCCHHHHHHHTTSCHHHHHHHTSS
T ss_pred HHHHHHHHHH----------HHHhcCcccCCHHHHHHHhCcCHHHHHHHcCC
Confidence 4677778777 44444566899999999999999999998764
No 296
>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, serine kinase, DNA-bindin mercury derivative, repressor; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B*
Probab=76.76 E-value=0.79 Score=29.28 Aligned_cols=30 Identities=13% Similarity=0.199 Sum_probs=23.2
Q ss_pred HHHhhCCCCCCHHHHHHHhhhhhhhhhccc
Q 027234 181 ILELMNIPGLTRENVASHLQKHRLYLSRLS 210 (226)
Q Consensus 181 I~~~~~~~~lt~~~va~~l~~~r~~l~r~~ 210 (226)
|...+..-++|..++|..+++++++++++-
T Consensus 17 l~~~r~~~glsq~~lA~~~gis~~~i~~~e 46 (88)
T 2wiu_B 17 MKLVRQQNGWTQSELAKKIGIKQATISNFE 46 (88)
T ss_dssp HHHHHHHTTCCHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHhCCCHHHHHHHH
Confidence 334444558999999999999999988753
No 297
>2guh_A Putative TETR-family transcriptional regulator; helix-turn-helix, TETR fold, structural genomics, PSI, prote structure initiative; HET: MSE; 1.52A {Rhodococcus SP}
Probab=76.75 E-value=1.5 Score=33.09 Aligned_cols=44 Identities=11% Similarity=0.097 Sum_probs=34.5
Q ss_pred hhHHHHHHHHHHhCCCCCCchHHHHhhCCCCCCHHHHHHHhhhhhhhhhcccCC
Q 027234 159 ELHQQFVSAVKELGFDKAGPKKILELMNIPGLTRENVASHLQKHRLYLSRLSGV 212 (226)
Q Consensus 159 ~l~~~Fi~~~~~~g~~~~~p~~I~~~~~~~~lt~~~va~~l~~~r~~l~r~~~~ 212 (226)
...++++.++.+ ++..-...++|+++||.+.++|+..+|+-|+.
T Consensus 39 ~~r~~Il~AA~~----------lf~e~G~~~~tv~~IA~~AGvs~~tlY~~F~s 82 (214)
T 2guh_A 39 QSRSLIVDAAGR----------AFATRPYREITLKDIAEDAGVSAPLIIKYFGS 82 (214)
T ss_dssp HHHHHHHHHHHH----------HHHHSCGGGCCHHHHHHHHTSCHHHHHHHHSS
T ss_pred hHHHHHHHHHHH----------HHHHcChhhcCHHHHHHHhCCCHHHHHHHcCC
Confidence 345677888777 44444566899999999999999999998864
No 298
>1xrs_B D-lysine 5,6-aminomutase beta subunit; TIM barrel, rossmann domain, PLP, cobalamin, 5'-deoxyad radical, adenosylcobalamin; HET: B12 PLP 5AD; 2.80A {Clostridium sticklandii} SCOP: c.23.6.1 d.230.4.1
Probab=76.68 E-value=26 Score=27.69 Aligned_cols=90 Identities=8% Similarity=0.005 Sum_probs=58.8
Q ss_pred CcEEEE---ECCHHHHHHHHHhCCCCceEEEEccCCCC----CCHH-HHHHHHhcC---CCCcEEEEeccCCHHHHHHHH
Q 027234 2 GFSVTK---CNRAEIALDMLRTNKNGYDIVISDVHMPD----MDGF-KLLELVGLE---MDLPVIMMCAHGSKEVVMKGV 70 (226)
Q Consensus 2 g~~V~~---~~~~~eal~~l~~~~~~~DlVl~D~~mp~----~dG~-~l~~~l~~~---~~~pvI~ls~~~~~~~~~~a~ 70 (226)
||+|.. .-..++.++.+.+.. +|+|.+...|.. +..+ ++++.++.. .+++|++=-...+.+ .+.
T Consensus 157 G~eVi~LG~~vp~e~iv~aa~e~~--~d~VglS~l~t~~~~~~~~~~~~i~~L~~~g~~~~i~vivGG~~~~~~---~a~ 231 (262)
T 1xrs_B 157 MIDAYNLGSQVANEDFIKKAVELE--ADVLLVSQTVTQKNVHIQNMTHLIELLEAEGLRDRFVLLCGGPRINNE---IAK 231 (262)
T ss_dssp TEEEEECCSSBCHHHHHHHHHHTT--CSEEEEECCCCTTSHHHHHHHHHHHHHHHTTCGGGSEEEEECTTCCHH---HHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHcC--CCEEEEEeecCCccchHHHHHHHHHHHHhcCCCCCCEEEEECCcCCHH---HHH
Confidence 788764 346788888888876 999999998875 2222 244555432 225554333333333 366
Q ss_pred hCCcceEEeCCCCHHHHHHHHHHHHH
Q 027234 71 THDACDYLTKPVRIEELKNIWQHVVR 96 (226)
Q Consensus 71 ~~ga~~yl~KP~~~~~L~~~l~~~~~ 96 (226)
+.|++.|..-.....++...+...+.
T Consensus 232 ~iGad~~~~da~~~~~~a~~l~~~~~ 257 (262)
T 1xrs_B 232 ELGYDAGFGPGRFADDVATFAVKTLN 257 (262)
T ss_dssp TTTCSEEECTTCCHHHHHHHHHHHHH
T ss_pred HcCCeEEECCchHHHHHHHHHHHHHH
Confidence 78999999888888887776655443
No 299
>3ljl_A Transcriptional regulator LUXT; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MES; 3.20A {Vibrio parahaemolyticus}
Probab=76.67 E-value=0.83 Score=32.59 Aligned_cols=43 Identities=14% Similarity=0.067 Sum_probs=32.8
Q ss_pred hHHHHHHHHHHhCCCCCCchHHHHhhCCCCCCHHHHHHHhhhhhhhhhcccCC
Q 027234 160 LHQQFVSAVKELGFDKAGPKKILELMNIPGLTRENVASHLQKHRLYLSRLSGV 212 (226)
Q Consensus 160 l~~~Fi~~~~~~g~~~~~p~~I~~~~~~~~lt~~~va~~l~~~r~~l~r~~~~ 212 (226)
..++++.++.+ ++..-.-.++|++.||.+.|+|+..+|+-|+.
T Consensus 15 ~r~~Il~aa~~----------lf~~~G~~~~ti~~Ia~~agvs~~t~Y~~F~s 57 (156)
T 3ljl_A 15 TIQKIMDAVVD----------QLLRLGYDKMSYTTLSQQTGVSRTGISHHFPK 57 (156)
T ss_dssp HHHHHHHHHHH----------HHHHTHHHHCCHHHHHHHHTCCHHHHHHHCSS
T ss_pred HHHHHHHHHHH----------HHHHhChhhcCHHHHHHHHCCCHHHHHHHCCC
Confidence 34677777777 33333445789999999999999999998875
No 300
>3v6g_A Probable transcriptional regulatory protein (PROB family); helix-turn-helix DNA binding domain; 1.82A {Mycobacterium tuberculosis}
Probab=76.66 E-value=2.6 Score=31.62 Aligned_cols=42 Identities=17% Similarity=0.147 Sum_probs=33.6
Q ss_pred HHHHHHHHHHhCCCCCCchHHHHhhCCCCCCHHHHHHHhhhhhhhhhcccCC
Q 027234 161 HQQFVSAVKELGFDKAGPKKILELMNIPGLTRENVASHLQKHRLYLSRLSGV 212 (226)
Q Consensus 161 ~~~Fi~~~~~~g~~~~~p~~I~~~~~~~~lt~~~va~~l~~~r~~l~r~~~~ 212 (226)
.++++.++.. ++..-.-.+.|++.||.+.|+|+..||+-|+.
T Consensus 16 R~~Il~AA~~----------lf~~~G~~~~s~~~IA~~AGvs~~tlY~~F~s 57 (208)
T 3v6g_A 16 RQAIVEAAER----------VIARQGLGGLSHRRVAAEANVPVGSTTYYFND 57 (208)
T ss_dssp HHHHHHHHHH----------HHHHHCTTCCCHHHHHHHHTSCHHHHHHHCSS
T ss_pred HHHHHHHHHH----------HHHHhCcccCCHHHHHHHhCCCchhHHHHcCC
Confidence 4577888777 33444566899999999999999999998864
No 301
>1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1
Probab=76.58 E-value=14 Score=28.23 Aligned_cols=68 Identities=15% Similarity=0.012 Sum_probs=47.4
Q ss_pred CHHHHHHHHHhCCCCce-EEEEccCCCCC---CHHHHHHHHhcCCCCcEEEEeccCCHHHHHHHHhCCcceEEe
Q 027234 10 RAEIALDMLRTNKNGYD-IVISDVHMPDM---DGFKLLELVGLEMDLPVIMMCAHGSKEVVMKGVTHDACDYLT 79 (226)
Q Consensus 10 ~~~eal~~l~~~~~~~D-lVl~D~~mp~~---dG~~l~~~l~~~~~~pvI~ls~~~~~~~~~~a~~~ga~~yl~ 79 (226)
+..+..+.+.+.. .| +.+.|...... ...++++.++...++|+++-....+.+.+..++..||+....
T Consensus 34 ~~~~~a~~~~~~G--~d~i~v~~~~~~~~~~~~~~~~i~~i~~~~~ipvi~~g~i~~~~~~~~~~~~Gad~V~i 105 (253)
T 1h5y_A 34 DPVEMAVRYEEEG--ADEIAILDITAAPEGRATFIDSVKRVAEAVSIPVLVGGGVRSLEDATTLFRAGADKVSV 105 (253)
T ss_dssp CHHHHHHHHHHTT--CSCEEEEECCCCTTTHHHHHHHHHHHHHHCSSCEEEESSCCSHHHHHHHHHHTCSEEEE
T ss_pred cHHHHHHHHHHcC--CCEEEEEeCCccccCCcccHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 5556666666543 78 44566543221 246677777766689999888778888889999999988774
No 302
>2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A*
Probab=76.53 E-value=11 Score=28.86 Aligned_cols=77 Identities=16% Similarity=0.100 Sum_probs=52.3
Q ss_pred HHHHHHHHHhCCCCceEE-EEccCCCCC---CHHHHHHHHhcCCCCcEEEEeccCCHHHHHHHHhC---CcceEEe----
Q 027234 11 AEIALDMLRTNKNGYDIV-ISDVHMPDM---DGFKLLELVGLEMDLPVIMMCAHGSKEVVMKGVTH---DACDYLT---- 79 (226)
Q Consensus 11 ~~eal~~l~~~~~~~DlV-l~D~~mp~~---dG~~l~~~l~~~~~~pvI~ls~~~~~~~~~~a~~~---ga~~yl~---- 79 (226)
..+.++.+.... +|.| +++..-.++ -.+++++.++...++|||.-.+-...+.+.++++. ||++++.
T Consensus 151 ~~e~~~~~~~~G--~~~i~~~~~~~~~~~~g~~~~~~~~l~~~~~ipvia~GGI~~~~d~~~~~~~~~~Gad~v~vG~al 228 (244)
T 2y88_A 151 LWDVLERLDSEG--CSRFVVTDITKDGTLGGPNLDLLAGVADRTDAPVIASGGVSSLDDLRAIATLTHRGVEGAIVGKAL 228 (244)
T ss_dssp HHHHHHHHHHTT--CCCEEEEETTTTTTTSCCCHHHHHHHHTTCSSCEEEESCCCSHHHHHHHHTTGGGTEEEEEECHHH
T ss_pred HHHHHHHHHhCC--CCEEEEEecCCccccCCCCHHHHHHHHHhCCCCEEEECCCCCHHHHHHHHhhccCCCCEEEEcHHH
Confidence 455555555543 7755 566543322 24778888876678999988888888999999998 9998774
Q ss_pred --CCCCHHHHHH
Q 027234 80 --KPVRIEELKN 89 (226)
Q Consensus 80 --KP~~~~~L~~ 89 (226)
.|....++..
T Consensus 229 ~~~~~~~~~~~~ 240 (244)
T 2y88_A 229 YARRFTLPQALA 240 (244)
T ss_dssp HTTSSCHHHHHH
T ss_pred HCCCcCHHHHHH
Confidence 3555555443
No 303
>1y6u_A XIS, excisionase from transposon TN916; structure, DNA architectural protein, tyrosine recombinase, winged-helix protein; NMR {Enterococcus faecalis}
Probab=76.46 E-value=0.51 Score=29.56 Aligned_cols=26 Identities=23% Similarity=0.096 Sum_probs=22.6
Q ss_pred CCCCCHHHHHHHhhhhhhhhhcccCC
Q 027234 187 IPGLTRENVASHLQKHRLYLSRLSGV 212 (226)
Q Consensus 187 ~~~lt~~~va~~l~~~r~~l~r~~~~ 212 (226)
-.-||++++|..|+++|+++|++.+.
T Consensus 14 K~~LTi~EaAeylgIg~~~l~~L~~~ 39 (70)
T 1y6u_A 14 RYTLTIEEASKYFRIGENKLRRLAEE 39 (70)
T ss_dssp SSEEEHHHHHHHTCSCHHHHHHHHHH
T ss_pred cceeCHHHHHHHHCcCHHHHHHHHHc
Confidence 34689999999999999999998644
No 304
>3g1o_A Transcriptional regulatory repressor protein (TETR-family) EThr; TERT family, transcriptional repressor, DNA-binding; HET: RF1; 1.85A {Mycobacterium tuberculosis}
Probab=76.40 E-value=1.5 Score=33.95 Aligned_cols=44 Identities=9% Similarity=0.081 Sum_probs=34.2
Q ss_pred hhHHHHHHHHHHhCCCCCCchHHHHhhCCCCCCHHHHHHHhhhhhhhhhcccCC
Q 027234 159 ELHQQFVSAVKELGFDKAGPKKILELMNIPGLTRENVASHLQKHRLYLSRLSGV 212 (226)
Q Consensus 159 ~l~~~Fi~~~~~~g~~~~~p~~I~~~~~~~~lt~~~va~~l~~~r~~l~r~~~~ 212 (226)
.-.+++++++.+ ++..-.-.++|+++||...++++..||+-|+.
T Consensus 43 ~~r~~Il~AA~~----------lf~~~G~~~~t~~~IA~~aGvs~~tlY~~F~s 86 (255)
T 3g1o_A 43 DRELAILATAEN----------LLEDRPLADISVDDLAKGAGISRPTFYFYFPS 86 (255)
T ss_dssp HHHHHHHHHHHH----------HHTTSCGGGCCHHHHHHHHTCCHHHHHHHCSS
T ss_pred HHHHHHHHHHHH----------HHHHcCCccCcHHHHHHHhCCCHHHHHHHcCC
Confidence 345678888887 33334455789999999999999999998874
No 305
>2jj7_A Hemolysin II regulatory protein; DNA-binding protein, transcription regulation, DNA-binding, family, transcription, transcriptional regulator; 2.10A {Bacillus cereus} PDB: 2wv1_A 2jk3_A 2fx0_A
Probab=76.36 E-value=0.74 Score=33.53 Aligned_cols=42 Identities=17% Similarity=0.119 Sum_probs=32.2
Q ss_pred HHHHHHHHHHhCCCCCCchHHHHhhCCCCCCHHHHHHHhhhhhhhhhcccCC
Q 027234 161 HQQFVSAVKELGFDKAGPKKILELMNIPGLTRENVASHLQKHRLYLSRLSGV 212 (226)
Q Consensus 161 ~~~Fi~~~~~~g~~~~~p~~I~~~~~~~~lt~~~va~~l~~~r~~l~r~~~~ 212 (226)
.++++.++.+ .+.+ -.-.++|+++||.+.|+|+..+|+-|+.
T Consensus 9 r~~Il~aa~~---------l~~~-~G~~~~t~~~IA~~agvs~~tlY~~F~s 50 (186)
T 2jj7_A 9 MENILKAAKK---------KFGE-RGYEGTSIQEIAKEAKVNVAMASYYFNG 50 (186)
T ss_dssp HHHHHHHHHH---------HHHH-HHHHHCCHHHHHHHHTSCHHHHHHHHSS
T ss_pred HHHHHHHHHH---------HHHH-cCCccCCHHHHHHHhCCChhhhhhhcCC
Confidence 4567777777 2333 3445799999999999999999998864
No 306
>3g5g_A Regulatory protein; transcriptional regulator, helix-turn-helix, restriction- modification, transcription regulator; 2.80A {Enterobacter SP} PDB: 3fya_A
Probab=76.27 E-value=0.98 Score=30.07 Aligned_cols=31 Identities=26% Similarity=0.360 Sum_probs=25.7
Q ss_pred HHHHhhCCCCCCHHHHHHHhhhhhhhhhccc
Q 027234 180 KILELMNIPGLTRENVASHLQKHRLYLSRLS 210 (226)
Q Consensus 180 ~I~~~~~~~~lt~~~va~~l~~~r~~l~r~~ 210 (226)
.|.+....-++|++++|..+++++++++++-
T Consensus 32 ~lr~~R~~~gltq~elA~~~gis~~~is~iE 62 (99)
T 3g5g_A 32 VIKKIRLEKGMTQEDLAYKSNLDRTYISGIE 62 (99)
T ss_dssp HHHHHHHHTTCCHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHCcCHHHHHHHH
Confidence 3555556679999999999999999999863
No 307
>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4
Probab=76.13 E-value=2.9 Score=33.40 Aligned_cols=52 Identities=12% Similarity=0.146 Sum_probs=37.3
Q ss_pred HHHHHHHHhcC-CCCcEEEEeccC------CHHHHHHHHhCCcceEEeCCCCHHHHHHH
Q 027234 39 GFKLLELVGLE-MDLPVIMMCAHG------SKEVVMKGVTHDACDYLTKPVRIEELKNI 90 (226)
Q Consensus 39 G~~l~~~l~~~-~~~pvI~ls~~~------~~~~~~~a~~~ga~~yl~KP~~~~~L~~~ 90 (226)
.+++++.++.. .++|+++++-.. -.....++.+.|+++.|.--+..++....
T Consensus 84 ~~~~v~~~r~~~~~~Pivlm~Y~n~v~~~g~~~f~~~~~~aGvdGvIipDlp~ee~~~~ 142 (271)
T 3nav_A 84 CFELIAQIRARNPETPIGLLMYANLVYARGIDDFYQRCQKAGVDSVLIADVPTNESQPF 142 (271)
T ss_dssp HHHHHHHHHHHCTTSCEEEEECHHHHHHTCHHHHHHHHHHHTCCEEEETTSCGGGCHHH
T ss_pred HHHHHHHHHhcCCCCCEEEEecCcHHHHHhHHHHHHHHHHCCCCEEEECCCCHHHHHHH
Confidence 35567777754 789999987332 24568889999999999877777764433
No 308
>2v5j_A 2,4-dihydroxyhept-2-ENE-1,7-dioic acid aldolase; lyase, class II aldolase, homoprotocatechuate, aromatic DEGR aromatic hydrocarbons catabolism; 1.60A {Escherichia coli} PDB: 2v5k_A
Probab=76.10 E-value=28 Score=27.80 Aligned_cols=82 Identities=7% Similarity=0.039 Sum_probs=56.3
Q ss_pred CHHHHHHHHHhCCCCceEEEEccCCCCCCHHHHHHHHh--cCCCCcEEEEeccCCHHHHHHHHhCCcceEE-eCCCCHHH
Q 027234 10 RAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVG--LEMDLPVIMMCAHGSKEVVMKGVTHDACDYL-TKPVRIEE 86 (226)
Q Consensus 10 ~~~eal~~l~~~~~~~DlVl~D~~mp~~dG~~l~~~l~--~~~~~pvI~ls~~~~~~~~~~a~~~ga~~yl-~KP~~~~~ 86 (226)
+..+.++.+.... +|.|++|+.-...+--.+...++ .....++++=+...+...+..++..|+++.+ +|--+.++
T Consensus 48 ~~p~~~e~a~~~G--aD~v~lDlEh~~~~~~~~~~~l~a~~~~~~~~~VRv~~~d~~di~~~ld~ga~~ImlP~V~saee 125 (287)
T 2v5j_A 48 SSSYSAELLAGAG--FDWLLIDGEHAPNNVQTVLTQLQAIAPYPSQPVVRPSWNDPVQIKQLLDVGTQTLLVPMVQNADE 125 (287)
T ss_dssp CCHHHHHHHHTSC--CSEEEEESSSSSCCHHHHHHHHHHHTTSSSEEEEECSSSCHHHHHHHHHTTCCEEEESCCCSHHH
T ss_pred CCHHHHHHHHhCC--CCEEEEeCCCccchHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHhCCCCEEEeCCCCCHHH
Confidence 3445566666644 99999999765555545544443 2235677777777778888999999998755 55567888
Q ss_pred HHHHHHH
Q 027234 87 LKNIWQH 93 (226)
Q Consensus 87 L~~~l~~ 93 (226)
+..+++.
T Consensus 126 a~~~~~~ 132 (287)
T 2v5j_A 126 AREAVRA 132 (287)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7766554
No 309
>4ghj_A Probable transcriptional regulator; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE; 1.75A {Vibrio vulnificus}
Probab=76.01 E-value=0.86 Score=30.67 Aligned_cols=30 Identities=17% Similarity=0.035 Sum_probs=24.8
Q ss_pred HHHHhhCCCCCCHHHHHHHhhhhhhhhhcc
Q 027234 180 KILELMNIPGLTRENVASHLQKHRLYLSRL 209 (226)
Q Consensus 180 ~I~~~~~~~~lt~~~va~~l~~~r~~l~r~ 209 (226)
.|.+....-++|++++|..+++|+++++|+
T Consensus 40 ~ir~~R~~~glTQ~eLA~~~gvs~~~is~~ 69 (101)
T 4ghj_A 40 RLKQARLNRDLTQSEVAEIAGIARKTVLNA 69 (101)
T ss_dssp HHHHHHHHTTCCHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHcCCCHHHHHHH
Confidence 355555566999999999999999999986
No 310
>2i10_A Putative TETR transcriptional regulator; structural genomics, APC5890, TETR family, PSI-2, protein ST initiative; HET: MSE NPO PGE; 2.05A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=75.94 E-value=2.4 Score=31.40 Aligned_cols=42 Identities=14% Similarity=0.074 Sum_probs=32.7
Q ss_pred HHHHHHHHHHhCCCCCCchHHHHhhCCCCCCHHHHHHHhhhhhhhhhcccCC
Q 027234 161 HQQFVSAVKELGFDKAGPKKILELMNIPGLTRENVASHLQKHRLYLSRLSGV 212 (226)
Q Consensus 161 ~~~Fi~~~~~~g~~~~~p~~I~~~~~~~~lt~~~va~~l~~~r~~l~r~~~~ 212 (226)
.++++.++.+ +...-.-.+.|+++||.+.|+|+..+|+-|+.
T Consensus 13 r~~Il~aA~~----------lF~~~Gy~~ts~~~IA~~aGvsk~tlY~~F~s 54 (202)
T 2i10_A 13 DQVALQTAME----------LFWRQGYEGTSITDLTKALGINPPSLYAAFGS 54 (202)
T ss_dssp CHHHHHHHHH----------HHHHHTTTTCCHHHHHHHHTCCHHHHHHHHCS
T ss_pred HHHHHHHHHH----------HHHHhCcccCCHHHHHHHhCCChHHHHHHhCC
Confidence 3567777777 33334566899999999999999999998764
No 311
>3bw2_A 2-nitropropane dioxygenase; TIM barrel, oxidoreductase; HET: FMN; 2.10A {Streptomyces ansochromogenes} PDB: 3bw4_A* 3bw3_A*
Probab=75.82 E-value=20 Score=29.65 Aligned_cols=70 Identities=19% Similarity=0.109 Sum_probs=50.5
Q ss_pred EECCHHHHHHHHHhCCCCceEEEEccCC---------CC-------CCHHHHHHHHhcCCCCcEEEEeccCCHHHHHHHH
Q 027234 7 KCNRAEIALDMLRTNKNGYDIVISDVHM---------PD-------MDGFKLLELVGLEMDLPVIMMCAHGSKEVVMKGV 70 (226)
Q Consensus 7 ~~~~~~eal~~l~~~~~~~DlVl~D~~m---------p~-------~dG~~l~~~l~~~~~~pvI~ls~~~~~~~~~~a~ 70 (226)
.+.+.+++...... ++|.|+++-.- +. ...+++++.++...++|||+..+-.+.+.+.+++
T Consensus 151 ~v~t~~~a~~a~~~---GaD~i~v~g~~~GGh~g~~~~~~~~~~~~~~~~~~l~~i~~~~~iPViaaGGI~~~~~~~~~l 227 (369)
T 3bw2_A 151 TATTPEEARAVEAA---GADAVIAQGVEAGGHQGTHRDSSEDDGAGIGLLSLLAQVREAVDIPVVAAGGIMRGGQIAAVL 227 (369)
T ss_dssp EESSHHHHHHHHHT---TCSEEEEECTTCSEECCCSSCCGGGTTCCCCHHHHHHHHHHHCSSCEEEESSCCSHHHHHHHH
T ss_pred ECCCHHHHHHHHHc---CCCEEEEeCCCcCCcCCCcccccccccccccHHHHHHHHHHhcCceEEEECCCCCHHHHHHHH
Confidence 46677777655542 38999885311 10 2348888888765689998887777899999999
Q ss_pred hCCcceEEe
Q 027234 71 THDACDYLT 79 (226)
Q Consensus 71 ~~ga~~yl~ 79 (226)
..||++...
T Consensus 228 ~~GAd~V~v 236 (369)
T 3bw2_A 228 AAGADAAQL 236 (369)
T ss_dssp HTTCSEEEE
T ss_pred HcCCCEEEE
Confidence 999988764
No 312
>2oer_A Probable transcriptional regulator; helix-turn-helix, alpha-beta, structural genomics, PSI-2, protein structure initiative; 2.00A {Pseudomonas aeruginosa}
Probab=75.61 E-value=1.8 Score=32.45 Aligned_cols=44 Identities=18% Similarity=0.052 Sum_probs=31.9
Q ss_pred hhHHHHHHHHHHhCCCCCCchHHHHhhCCCCCCHHHHHHHhhhhhhhhhcccCC
Q 027234 159 ELHQQFVSAVKELGFDKAGPKKILELMNIPGLTRENVASHLQKHRLYLSRLSGV 212 (226)
Q Consensus 159 ~l~~~Fi~~~~~~g~~~~~p~~I~~~~~~~~lt~~~va~~l~~~r~~l~r~~~~ 212 (226)
...++++.++.++ ...-.-.+.|+++||.+.|+|+..+|+-|+.
T Consensus 24 ~~r~~Il~aA~~l----------f~e~G~~~~s~~~IA~~aGvskgtlY~yF~s 67 (214)
T 2oer_A 24 ELVASILEAAVQV----------LASEGAQRFTTARVAERAGVSIGSLYQYFPN 67 (214)
T ss_dssp HHHHHHHHHHHHC----------------CCCCHHHHHHHHTCCHHHHHHHCSS
T ss_pred HHHHHHHHHHHHH----------HHhhCcccccHHHHHHHhCCCCchHHHhCCC
Confidence 3457788888883 3333455789999999999999999998864
No 313
>2tps_A Protein (thiamin phosphate synthase); thiamin biosynthesis, TIM barrel; HET: TPS; 1.25A {Bacillus subtilis} SCOP: c.1.3.1 PDB: 1g4t_A* 3o15_A* 1g6c_A* 1g4e_A* 1g69_A* 3o16_A 1g4s_A* 1g4p_A* 1g67_A*
Probab=75.53 E-value=24 Score=26.61 Aligned_cols=68 Identities=13% Similarity=0.054 Sum_probs=44.6
Q ss_pred ECCHHHHHHHHHhCCCCceEEEEccCCC--------CCCHHHHHHHHhcCCC-CcEEEEeccCCHHHHHHHHhCCcceEE
Q 027234 8 CNRAEIALDMLRTNKNGYDIVISDVHMP--------DMDGFKLLELVGLEMD-LPVIMMCAHGSKEVVMKGVTHDACDYL 78 (226)
Q Consensus 8 ~~~~~eal~~l~~~~~~~DlVl~D~~mp--------~~dG~~l~~~l~~~~~-~pvI~ls~~~~~~~~~~a~~~ga~~yl 78 (226)
+.+..++...... . +|.|++....| ...|++.++.++.... +|+++..+-. .+.+.+++..|++++.
T Consensus 123 ~~t~~e~~~a~~~-g--~d~v~~~~v~~t~~~~~~~~~~~~~~l~~~~~~~~~~pvia~GGI~-~~nv~~~~~~Ga~gv~ 198 (227)
T 2tps_A 123 AHTMSEVKQAEED-G--ADYVGLGPIYPTETKKDTRAVQGVSLIEAVRRQGISIPIVGIGGIT-IDNAAPVIQAGADGVS 198 (227)
T ss_dssp ECSHHHHHHHHHH-T--CSEEEECCSSCCCSSSSCCCCCTTHHHHHHHHTTCCCCEEEESSCC-TTTSHHHHHTTCSEEE
T ss_pred cCCHHHHHHHHhC-C--CCEEEECCCcCCCCCCCCCCccCHHHHHHHHHhCCCCCEEEEcCCC-HHHHHHHHHcCCCEEE
Confidence 5677776555432 3 89988632222 1236788888875445 8988766655 6667777888998876
Q ss_pred e
Q 027234 79 T 79 (226)
Q Consensus 79 ~ 79 (226)
.
T Consensus 199 v 199 (227)
T 2tps_A 199 M 199 (227)
T ss_dssp E
T ss_pred E
Confidence 3
No 314
>3tdn_A FLR symmetric alpha-beta TIM barrel; symmetric superfold, de novo protein; 1.40A {Synthetic construct} PDB: 3og3_A 3tdm_A
Probab=75.50 E-value=12 Score=29.03 Aligned_cols=68 Identities=10% Similarity=0.052 Sum_probs=48.3
Q ss_pred CHHHHHHHHHhCCCCceE-EEEccCCC---CCCHHHHHHHHhcCCCCcEEEEeccCCHHHHHHHHhCCcceEEe
Q 027234 10 RAEIALDMLRTNKNGYDI-VISDVHMP---DMDGFKLLELVGLEMDLPVIMMCAHGSKEVVMKGVTHDACDYLT 79 (226)
Q Consensus 10 ~~~eal~~l~~~~~~~Dl-Vl~D~~mp---~~dG~~l~~~l~~~~~~pvI~ls~~~~~~~~~~a~~~ga~~yl~ 79 (226)
+..+..+.+.+.. +|. .+.|+.-. ...-+++++.+++...+|+++--+-.+.+.+..++..||+..+.
T Consensus 36 ~~~~~a~~~~~~G--~~~i~v~d~~~~~~~~~~~~~~i~~i~~~~~ipvi~~Ggi~~~~~~~~~l~~Gad~V~i 107 (247)
T 3tdn_A 36 LLRDWVVEVEKRG--AGEILLTSIDRDGTKSGYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLRGADKVSI 107 (247)
T ss_dssp EHHHHHHHHHHTT--CSEEEEEETTTTTCSSCCCHHHHHHHGGGCCSCEEEESCCCSHHHHHHHHHTTCSEECC
T ss_pred CHHHHHHHHHHcC--CCEEEEEecCcccCCCcccHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCCeeeh
Confidence 4555555555533 664 45676422 22337888999877889999888888889999999999888764
No 315
>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima}
Probab=75.48 E-value=14 Score=28.72 Aligned_cols=69 Identities=13% Similarity=0.117 Sum_probs=48.2
Q ss_pred CHHHHHHHHHhCCCCce-EEEEccCCCCC---CHHHHHHHHhcCCCCcEEEEeccCCHHHHHHHHhCCcceEEeC
Q 027234 10 RAEIALDMLRTNKNGYD-IVISDVHMPDM---DGFKLLELVGLEMDLPVIMMCAHGSKEVVMKGVTHDACDYLTK 80 (226)
Q Consensus 10 ~~~eal~~l~~~~~~~D-lVl~D~~mp~~---dG~~l~~~l~~~~~~pvI~ls~~~~~~~~~~a~~~ga~~yl~K 80 (226)
+..+..+.+.+.. .| +.+.|....+. .-+++++.++....+|+++.....+.+.+..++..||++.+.=
T Consensus 31 ~~~~~a~~~~~~G--a~~i~v~d~~~~~~~~g~~~~~i~~i~~~~~iPvi~~ggi~~~~~i~~~~~~Gad~v~lg 103 (266)
T 2w6r_A 31 LLRDWVVEVEKRG--AGEILLTSIDRDGTKSGYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLAGADKALAA 103 (266)
T ss_dssp EHHHHHHHHHHHT--CSEEEEEETTTSSCSSCCCHHHHHHHGGGCCSCEEEESCCCSTHHHHHHHHHTCSEEECC
T ss_pred CHHHHHHHHHHCC--CCEEEEEecCcccCCCcccHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCcHhhhh
Confidence 4555555555533 55 45567654322 1278888888777899998877777788889999999998754
No 316
>3frq_A Repressor protein MPHR(A); macrolide antibiotic. repressor, biosensor, erythromycin, STRPTOMYCES, natural products, biosynthesis, DNA-binding; HET: ERY; 1.76A {Escherichia coli} PDB: 3g56_A
Probab=75.36 E-value=0.82 Score=33.62 Aligned_cols=42 Identities=17% Similarity=0.080 Sum_probs=32.4
Q ss_pred HHHHHHHHHHhCCCCCCchHHHHhhCCCCCCHHHHHHHhhhhhhhhhcccCC
Q 027234 161 HQQFVSAVKELGFDKAGPKKILELMNIPGLTRENVASHLQKHRLYLSRLSGV 212 (226)
Q Consensus 161 ~~~Fi~~~~~~g~~~~~p~~I~~~~~~~~lt~~~va~~l~~~r~~l~r~~~~ 212 (226)
.++++.++.+ ++..-.-.++|+++||.+.|+||..+|+-|+.
T Consensus 10 r~~Il~AA~~----------l~~~~G~~~~t~~~IA~~agvs~~t~Y~~F~s 51 (195)
T 3frq_A 10 DDEVLEAATV----------VLKRCGPIEFTLSGVAKEVGLSRAALIQRFTN 51 (195)
T ss_dssp HHHHHHHHHH----------HHHHHHHHHCCHHHHHHHHTCCHHHHHHHHCS
T ss_pred HHHHHHHHHH----------HHHhhCcccCCHHHHHHHhCCCHHHHHHHcCC
Confidence 4567777777 33333445789999999999999999998864
No 317
>1x57_A Endothelial differentiation-related factor 1; HMBF1alpha, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.12
Probab=75.20 E-value=1.3 Score=28.62 Aligned_cols=29 Identities=17% Similarity=0.299 Sum_probs=22.3
Q ss_pred HHHhhCCCCCCHHHHHHHhhhhhhhhhcc
Q 027234 181 ILELMNIPGLTRENVASHLQKHRLYLSRL 209 (226)
Q Consensus 181 I~~~~~~~~lt~~~va~~l~~~r~~l~r~ 209 (226)
|.+.+..-++|..++|..+++++.+++++
T Consensus 18 l~~~r~~~glsq~~lA~~~gis~~~is~~ 46 (91)
T 1x57_A 18 IQQGRQSKGLTQKDLATKINEKPQVIADY 46 (91)
T ss_dssp HHHHHHTTTCCHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHCcCHHHHHHH
Confidence 44445566889999999999988888775
No 318
>2vpr_A Tetracycline resistance repressor protein; transcription, metal-binding, antibiotic resistance, transcr regulator; HET: TDC; 2.49A {Pasteurella multocida}
Probab=75.14 E-value=1.1 Score=33.90 Aligned_cols=42 Identities=19% Similarity=0.203 Sum_probs=31.5
Q ss_pred HHHHHHHHHHhCCCCCCchHHHHhhCCCCCCHHHHHHHhhhhhhhhhcccCC
Q 027234 161 HQQFVSAVKELGFDKAGPKKILELMNIPGLTRENVASHLQKHRLYLSRLSGV 212 (226)
Q Consensus 161 ~~~Fi~~~~~~g~~~~~p~~I~~~~~~~~lt~~~va~~l~~~r~~l~r~~~~ 212 (226)
.++++.++.. ++..-...++|+..||.++++++..+|+-|+.
T Consensus 6 r~~Il~aA~~----------l~~~~G~~~~s~~~IA~~agvs~~tlY~~f~~ 47 (207)
T 2vpr_A 6 KEQVIDNALI----------LLNEVGIEGLTTRKLAQKIGVEQPTLYWHVKN 47 (207)
T ss_dssp HHHHHHHHHH----------HHHHHHHHHCCHHHHHHHHTCCHHHHTTTCCS
T ss_pred HHHHHHHHHH----------HHHhcCcccCCHHHHHHHhCCChhHHHHHcCC
Confidence 3456666666 33333445799999999999999999998864
No 319
>1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A
Probab=75.06 E-value=10 Score=29.19 Aligned_cols=79 Identities=19% Similarity=0.148 Sum_probs=51.6
Q ss_pred CHHHHHHHHHhCCCCceE-EEEccCCCCC---CHHHHHHHHhcCCCCcEEEEeccCCHHHHHHHHhC---CcceEEe---
Q 027234 10 RAEIALDMLRTNKNGYDI-VISDVHMPDM---DGFKLLELVGLEMDLPVIMMCAHGSKEVVMKGVTH---DACDYLT--- 79 (226)
Q Consensus 10 ~~~eal~~l~~~~~~~Dl-Vl~D~~mp~~---dG~~l~~~l~~~~~~pvI~ls~~~~~~~~~~a~~~---ga~~yl~--- 79 (226)
+..+..+.+.... +|. ++++..-.++ -.+++++.++...++|||...+-.+.+.+.++++. ||++++.
T Consensus 147 ~~~e~~~~~~~~G--~~~i~~~~~~~~~~~~g~~~~~~~~i~~~~~ipvia~GGI~~~~d~~~~~~~~~~Gadgv~vG~a 224 (244)
T 1vzw_A 147 DLYETLDRLNKEG--CARYVVTDIAKDGTLQGPNLELLKNVCAATDRPVVASGGVSSLDDLRAIAGLVPAGVEGAIVGKA 224 (244)
T ss_dssp BHHHHHHHHHHTT--CCCEEEEEC-------CCCHHHHHHHHHTCSSCEEEESCCCSHHHHHHHHTTGGGTEEEEEECHH
T ss_pred CHHHHHHHHHhCC--CCEEEEeccCcccccCCCCHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHhhccCCCceeeeeHH
Confidence 4555555555533 774 4566542221 23778888876668999988888888999999999 9999774
Q ss_pred ---CCCCHHHHHHH
Q 027234 80 ---KPVRIEELKNI 90 (226)
Q Consensus 80 ---KP~~~~~L~~~ 90 (226)
.|++..++...
T Consensus 225 l~~~~~~~~~~~~~ 238 (244)
T 1vzw_A 225 LYAKAFTLEEALEA 238 (244)
T ss_dssp HHTTSSCHHHHHHH
T ss_pred HHcCCCCHHHHHHH
Confidence 45565554443
No 320
>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2}
Probab=75.05 E-value=0.94 Score=28.57 Aligned_cols=31 Identities=16% Similarity=0.245 Sum_probs=24.6
Q ss_pred HHHhhCCCCCCHHHHHHHhhhhhhhhhcccC
Q 027234 181 ILELMNIPGLTRENVASHLQKHRLYLSRLSG 211 (226)
Q Consensus 181 I~~~~~~~~lt~~~va~~l~~~r~~l~r~~~ 211 (226)
|.+.+..-++|..++|..+++++.+++++-.
T Consensus 15 l~~~r~~~glsq~~lA~~~gis~~~i~~~e~ 45 (84)
T 2ef8_A 15 LTKLRKEASLSQSELAIFLGLSQSDISKIES 45 (84)
T ss_dssp HHHHHHHTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HHHHHHHcCCCHHHHHHHhCCCHHHHHHHHc
Confidence 4444445699999999999999999998643
No 321
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=75.05 E-value=1.1 Score=28.95 Aligned_cols=29 Identities=14% Similarity=0.321 Sum_probs=23.6
Q ss_pred HHHHhhCCCCCCHHHHHHHhhhhhhhhhc
Q 027234 180 KILELMNIPGLTRENVASHLQKHRLYLSR 208 (226)
Q Consensus 180 ~I~~~~~~~~lt~~~va~~l~~~r~~l~r 208 (226)
.|++.+...++|..+||.+|+++|+..+|
T Consensus 21 ~IL~lL~~~g~sa~eLAk~LgiSk~aVr~ 49 (82)
T 1oyi_A 21 EAIKTIGIEGATAAQLTRQLNMEKREVNK 49 (82)
T ss_dssp HHHHHHSSSTEEHHHHHHHSSSCHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHCcCHHHHHH
Confidence 47777777789999999999999985443
No 322
>3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum}
Probab=75.02 E-value=20 Score=30.25 Aligned_cols=69 Identities=13% Similarity=0.194 Sum_probs=49.4
Q ss_pred EECCHHHHHHHHHhCCCCceEEEEccCCC------------CCCHHHHHHHHh---cCCCCcEEEEeccCCHHHHHHHHh
Q 027234 7 KCNRAEIALDMLRTNKNGYDIVISDVHMP------------DMDGFKLLELVG---LEMDLPVIMMCAHGSKEVVMKGVT 71 (226)
Q Consensus 7 ~~~~~~eal~~l~~~~~~~DlVl~D~~mp------------~~dG~~l~~~l~---~~~~~pvI~ls~~~~~~~~~~a~~ 71 (226)
.+.+.++|..+.+. ++|.|.+-.. | +...+.++..+. ...++|||.-.+-.+...+.+++.
T Consensus 191 ~V~t~e~A~~a~~a---GAD~I~vG~g-~Gs~~~tr~~~g~g~p~~~al~~v~~~~~~~~IPVIA~GGI~~~~di~kala 266 (400)
T 3ffs_A 191 NVVTEEATKELIEN---GADGIKVGIG-PGSICTTRIVAGVGVPQITAIEKCSSVASKFGIPIIADGGIRYSGDIGKALA 266 (400)
T ss_dssp EECSHHHHHHHHHT---TCSEEEECC----------CCSCBCCCHHHHHHHHHHHHTTTTCCEEEESCCCSHHHHHHHHT
T ss_pred ecCCHHHHHHHHHc---CCCEEEEeCC-CCcCcccccccccchhHHHHHHHHHHHHHhcCCCEEecCCCCCHHHHHHHHH
Confidence 57888888887764 3899888321 1 123456666553 235799998888888999999999
Q ss_pred CCcceEEe
Q 027234 72 HDACDYLT 79 (226)
Q Consensus 72 ~ga~~yl~ 79 (226)
+||++...
T Consensus 267 lGAd~V~v 274 (400)
T 3ffs_A 267 VGASSVMI 274 (400)
T ss_dssp TTCSEEEE
T ss_pred cCCCEEEE
Confidence 99998764
No 323
>2hyj_A Putative TETR-family transcriptional regulator; HTH DNA binding motif, structural genomics, PSI-2, Pro structure initiative; 2.19A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=74.92 E-value=2.4 Score=31.36 Aligned_cols=43 Identities=16% Similarity=0.212 Sum_probs=33.5
Q ss_pred hHHHHHHHHHHhCCCCCCchHHHHhhCCCCCCHHHHHHHhhhhhhhhhcccCC
Q 027234 160 LHQQFVSAVKELGFDKAGPKKILELMNIPGLTRENVASHLQKHRLYLSRLSGV 212 (226)
Q Consensus 160 l~~~Fi~~~~~~g~~~~~p~~I~~~~~~~~lt~~~va~~l~~~r~~l~r~~~~ 212 (226)
..++++.++.+ +...-.-.+.|+++||.+.|+|+..+|+=|+.
T Consensus 13 ~r~~Il~aA~~----------lf~~~G~~~~s~~~IA~~aGvsk~tlY~hF~s 55 (200)
T 2hyj_A 13 TRGRILGRAAE----------IASEEGLDGITIGRLAEELEMSKSGVHKHFGT 55 (200)
T ss_dssp HHHHHHHHHHH----------HHHHHCGGGCCHHHHHHHHTCCHHHHHTTCSS
T ss_pred cHHHHHHHHHH----------HHHHcCcccCCHHHHHHHhCCChHHHHHHcCC
Confidence 35677888877 33334455889999999999999999998864
No 324
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response E family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=74.88 E-value=0.7 Score=29.26 Aligned_cols=31 Identities=23% Similarity=0.478 Sum_probs=24.5
Q ss_pred HHHhhCCCCCCHHHHHHHhhhhhhhhhcccC
Q 027234 181 ILELMNIPGLTRENVASHLQKHRLYLSRLSG 211 (226)
Q Consensus 181 I~~~~~~~~lt~~~va~~l~~~r~~l~r~~~ 211 (226)
|.+.....++|.+++|..+++++++++++-.
T Consensus 19 l~~~R~~~gltq~elA~~~gis~~~is~~e~ 49 (83)
T 3f6w_A 19 LLEARSAAGITQKELAARLGRPQSFVSKTEN 49 (83)
T ss_dssp HHHHHHHHTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHHHHHcCCCHHHHHHHHCcCHHHHHHHHC
Confidence 4444445589999999999999999998643
No 325
>2vws_A YFAU, 2-keto-3-deoxy sugar aldolase; lyase, escherichia coli K-12 protein YFAU, 2-keto-3-deoxy SU aldolase, degradation of homoprotocatechuate; 1.39A {Escherichia coli} PDB: 2vwt_A
Probab=74.88 E-value=29 Score=27.33 Aligned_cols=82 Identities=13% Similarity=0.101 Sum_probs=55.7
Q ss_pred HHHHHHHHHhCCCCceEEEEccCCCCCCHHHHHHHHh--cCCCCcEEEEeccCCHHHHHHHHhCCcceEE-eCCCCHHHH
Q 027234 11 AEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVG--LEMDLPVIMMCAHGSKEVVMKGVTHDACDYL-TKPVRIEEL 87 (226)
Q Consensus 11 ~~eal~~l~~~~~~~DlVl~D~~mp~~dG~~l~~~l~--~~~~~pvI~ls~~~~~~~~~~a~~~ga~~yl-~KP~~~~~L 87 (226)
..+.++.+.... +|.|++|+.-...+--++...++ .....++++=+...+...+..++..|+++.+ +|--+.+++
T Consensus 28 ~p~~~e~a~~~G--aD~v~lDlE~~~~~~~~~~~~~~a~~~~~~~~~VRv~~~~~~~i~~~l~~g~~~I~~P~V~s~ee~ 105 (267)
T 2vws_A 28 TAYMAEIAATSG--YDWLLIDGEHAPNTIQDLYHQLQAVAPYASQPVIRPVEGSKPLIKQVLDIGAQTLLIPMVDTAEQA 105 (267)
T ss_dssp CHHHHHHHHTTC--CSEEEEETTTSCCCHHHHHHHHHHHTTSSSEEEEECSSCCHHHHHHHHHTTCCEEEECCCCSHHHH
T ss_pred CHHHHHHHHhCC--CCEEEEcCCCCCCCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHhCCCEEEeCCCCCHHHH
Confidence 445556666644 99999999765555545544443 2235667776666778888899999998744 566678887
Q ss_pred HHHHHHH
Q 027234 88 KNIWQHV 94 (226)
Q Consensus 88 ~~~l~~~ 94 (226)
+..++.+
T Consensus 106 ~~~~~~~ 112 (267)
T 2vws_A 106 RQVVSAT 112 (267)
T ss_dssp HHHHHHT
T ss_pred HHHHHHH
Confidence 7766543
No 326
>3ni7_A Bacterial regulatory proteins, TETR family; transcriptional regulator, structural genomics, PSI-2, structure initiative; HET: MSE; 2.78A {Nitrosomonas europaea}
Probab=74.86 E-value=2.7 Score=31.65 Aligned_cols=43 Identities=9% Similarity=0.030 Sum_probs=33.3
Q ss_pred hHHHHHHHHHHhCCCCCCchHHHHhhCCCCCCHHHHHHHhhhhhhhhhcccCC
Q 027234 160 LHQQFVSAVKELGFDKAGPKKILELMNIPGLTRENVASHLQKHRLYLSRLSGV 212 (226)
Q Consensus 160 l~~~Fi~~~~~~g~~~~~p~~I~~~~~~~~lt~~~va~~l~~~r~~l~r~~~~ 212 (226)
..++++.++.. +...-.-.+.|+++||.+.|+++..+|+-|+.
T Consensus 8 ~r~~Il~aA~~----------l~~~~G~~~~tv~~Ia~~agvs~~t~y~~F~~ 50 (213)
T 3ni7_A 8 MRDAIVDTAVE----------LAAHTSWEAVRLYDIAARLAVSLDEIRLYFRE 50 (213)
T ss_dssp HHHHHHHHHHH----------HHHHSCSTTCCHHHHHHHTTSCHHHHHHHCSS
T ss_pred HHHHHHHHHHH----------HHHHcCccccCHHHHHHHhCCCHHHHHHHCCC
Confidence 34567777766 33444566899999999999999999998863
No 327
>2ewt_A BLDD, putative DNA-binding protein; the DNA-binding domain of BLDD; 1.81A {Streptomyces coelicolor}
Probab=74.60 E-value=0.93 Score=27.56 Aligned_cols=30 Identities=13% Similarity=0.169 Sum_probs=24.2
Q ss_pred HHHhhCCCCCCHHHHHHHhh--hhhhhhhccc
Q 027234 181 ILELMNIPGLTRENVASHLQ--KHRLYLSRLS 210 (226)
Q Consensus 181 I~~~~~~~~lt~~~va~~l~--~~r~~l~r~~ 210 (226)
|.+.+...++|..++|..++ +++++++++-
T Consensus 13 l~~~r~~~glsq~~lA~~~g~~is~~~i~~~e 44 (71)
T 2ewt_A 13 LRAIRTQQGLSLHGVEEKSQGRWKAVVVGSYE 44 (71)
T ss_dssp HHHHHHHTTCCHHHHHHHTTTSSCHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHCCcCCHHHHHHHH
Confidence 44455556999999999999 9999988853
No 328
>3lab_A Putative KDPG (2-keto-3-deoxy-6-phosphogluconate) aldolase; unknown function, aldolase superfamily, class I aldolase, KDPG aldolase domain; 1.84A {Oleispira antarctica} PDB: 3vcr_A
Probab=74.45 E-value=25 Score=26.94 Aligned_cols=86 Identities=10% Similarity=0.084 Sum_probs=56.9
Q ss_pred EEEECCHHHHHHHHHhC-CCCceEEEEccCCCCCCHHHHHHHHhcCCCCcEEEEeccCCHHHHHHHHhCCcceEEeCCCC
Q 027234 5 VTKCNRAEIALDMLRTN-KNGYDIVISDVHMPDMDGFKLLELVGLEMDLPVIMMCAHGSKEVVMKGVTHDACDYLTKPVR 83 (226)
Q Consensus 5 V~~~~~~~eal~~l~~~-~~~~DlVl~D~~mp~~dG~~l~~~l~~~~~~pvI~ls~~~~~~~~~~a~~~ga~~yl~KP~~ 83 (226)
|....+.++++.+.+.. ..+.++|=+.++-| ++++.++.++....-.+|-.-.-.+.+....+...||+-.++.-++
T Consensus 18 Vir~~~~~~a~~~a~al~~gGi~~iEvt~~t~--~a~~~I~~l~~~~p~~~IGAGTVlt~~~a~~ai~AGA~fivsP~~~ 95 (217)
T 3lab_A 18 VIVIDDLVHAIPMAKALVAGGVHLLEVTLRTE--AGLAAISAIKKAVPEAIVGAGTVCTADDFQKAIDAGAQFIVSPGLT 95 (217)
T ss_dssp EECCSCGGGHHHHHHHHHHTTCCEEEEETTST--THHHHHHHHHHHCTTSEEEEECCCSHHHHHHHHHHTCSEEEESSCC
T ss_pred EEEcCCHHHHHHHHHHHHHcCCCEEEEeCCCc--cHHHHHHHHHHHCCCCeEeeccccCHHHHHHHHHcCCCEEEeCCCc
Confidence 34455667766665432 13477766665554 7999999998543335665666668899999999999877765566
Q ss_pred HHHHHHHHH
Q 027234 84 IEELKNIWQ 92 (226)
Q Consensus 84 ~~~L~~~l~ 92 (226)
++.+....+
T Consensus 96 ~evi~~~~~ 104 (217)
T 3lab_A 96 PELIEKAKQ 104 (217)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 655544433
No 329
>4ac0_A Tetracycline repressor protein class B from trans TN1 0; transcription; HET: MIY; 2.45A {Escherichia coli}
Probab=74.31 E-value=1.2 Score=33.71 Aligned_cols=41 Identities=22% Similarity=0.256 Sum_probs=31.2
Q ss_pred HHHHHHHHHhCCCCCCchHHHHhhCCCCCCHHHHHHHhhhhhhhhhcccCC
Q 027234 162 QQFVSAVKELGFDKAGPKKILELMNIPGLTRENVASHLQKHRLYLSRLSGV 212 (226)
Q Consensus 162 ~~Fi~~~~~~g~~~~~p~~I~~~~~~~~lt~~~va~~l~~~r~~l~r~~~~ 212 (226)
++++.++.+ ++..-...++|++.||.++++++..+|+-|+.
T Consensus 6 ~~Il~aA~~----------l~~~~G~~~~s~~~IA~~aGvs~~tlY~~F~~ 46 (202)
T 4ac0_A 6 SKVINSALE----------LLNEVGIEGLTTRKLAQKLGVEQPTLYWHVKN 46 (202)
T ss_dssp HHHHHHHHH----------HHHHHHHHHCCHHHHHHHHTSCHHHHHTTCSS
T ss_pred HHHHHHHHH----------HHHhcCcccCCHHHHHHHhCCCchhHHhhcCC
Confidence 456666666 33333455799999999999999999998864
No 330
>3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A*
Probab=74.00 E-value=14 Score=29.38 Aligned_cols=76 Identities=8% Similarity=-0.043 Sum_probs=51.9
Q ss_pred CcEE-EEECCHHHHHHHHHhCCCCceEEEEccCCCC--CCHHHHHHHHhcC-C-CCcEEEEeccCCHHHHHHHHhCCcce
Q 027234 2 GFSV-TKCNRAEIALDMLRTNKNGYDIVISDVHMPD--MDGFKLLELVGLE-M-DLPVIMMCAHGSKEVVMKGVTHDACD 76 (226)
Q Consensus 2 g~~V-~~~~~~~eal~~l~~~~~~~DlVl~D~~mp~--~dG~~l~~~l~~~-~-~~pvI~ls~~~~~~~~~~a~~~ga~~ 76 (226)
|..+ ..+.+.+|+...+.. . +|+|-+.-.-.. .-+++.+..+... + ++|+|..++-.+.+.+.+....|+++
T Consensus 162 Gl~~lvev~t~ee~~~A~~~-G--ad~IGv~~r~l~~~~~dl~~~~~l~~~v~~~~pvVaegGI~t~edv~~l~~~Gadg 238 (272)
T 3qja_A 162 GMTALVEVHTEQEADRALKA-G--AKVIGVNARDLMTLDVDRDCFARIAPGLPSSVIRIAESGVRGTADLLAYAGAGADA 238 (272)
T ss_dssp TCEEEEEESSHHHHHHHHHH-T--CSEEEEESBCTTTCCBCTTHHHHHGGGSCTTSEEEEESCCCSHHHHHHHHHTTCSE
T ss_pred CCcEEEEcCCHHHHHHHHHC-C--CCEEEECCCcccccccCHHHHHHHHHhCcccCEEEEECCCCCHHHHHHHHHcCCCE
Confidence 4443 467788887665543 3 788876522111 1235556666533 3 68999988888899999999999999
Q ss_pred EEeC
Q 027234 77 YLTK 80 (226)
Q Consensus 77 yl~K 80 (226)
++.=
T Consensus 239 vlVG 242 (272)
T 3qja_A 239 VLVG 242 (272)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 9963
No 331
>1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A
Probab=73.64 E-value=28 Score=26.75 Aligned_cols=69 Identities=13% Similarity=0.038 Sum_probs=47.0
Q ss_pred CHHHHHHHHHhCCCCceEE-EEccCCCCC---CHHHHHHHHhcCCCCcEEEEeccCCHHHHHHHHhCCcceEEeC
Q 027234 10 RAEIALDMLRTNKNGYDIV-ISDVHMPDM---DGFKLLELVGLEMDLPVIMMCAHGSKEVVMKGVTHDACDYLTK 80 (226)
Q Consensus 10 ~~~eal~~l~~~~~~~DlV-l~D~~mp~~---dG~~l~~~l~~~~~~pvI~ls~~~~~~~~~~a~~~ga~~yl~K 80 (226)
+..+..+.+.+.. .|.+ +.|...... ..+++++.+++...+|+++-..-.+.+.+..++..||+..+.-
T Consensus 31 d~~~~a~~~~~~G--ad~i~v~d~~~~~~~~~~~~~~i~~i~~~~~ipvi~~ggI~~~~~~~~~~~~Gad~V~lg 103 (253)
T 1thf_D 31 DPVELGKFYSEIG--IDELVFLDITASVEKRKTMLELVEKVAEQIDIPFTVGGGIHDFETASELILRGADKVSIN 103 (253)
T ss_dssp CHHHHHHHHHHTT--CCEEEEEESSCSSSHHHHHHHHHHHHHTTCCSCEEEESSCCSHHHHHHHHHTTCSEEEES
T ss_pred CHHHHHHHHHHcC--CCEEEEECCchhhcCCcccHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCCEEEEC
Confidence 5556556665533 6654 455432221 2356667777767899998888888889999999999987753
No 332
>2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics, oxidoreductase, flavoprotein; HET: FMN; 1.70A {Streptococcus pneumoniae} PDB: 2z6j_A*
Probab=73.48 E-value=21 Score=29.09 Aligned_cols=70 Identities=20% Similarity=0.199 Sum_probs=50.7
Q ss_pred EECCHHHHHHHHHhCCCCceEEEEccCCC-----CCCHHHHHHHHhcCCCCcEEEEeccCCHHHHHHHHhCCcceEEe
Q 027234 7 KCNRAEIALDMLRTNKNGYDIVISDVHMP-----DMDGFKLLELVGLEMDLPVIMMCAHGSKEVVMKGVTHDACDYLT 79 (226)
Q Consensus 7 ~~~~~~eal~~l~~~~~~~DlVl~D~~mp-----~~dG~~l~~~l~~~~~~pvI~ls~~~~~~~~~~a~~~ga~~yl~ 79 (226)
.+.+.++|....+ . ++|.|+++-.-. ....+++++.++...++|||+..+-.+.+.+.+++..||++...
T Consensus 116 ~v~~~~~a~~~~~-~--GaD~i~v~g~~~GG~~g~~~~~~ll~~i~~~~~iPViaaGGI~~~~~~~~al~~GAdgV~v 190 (332)
T 2z6i_A 116 VVPSVALAKRMEK-I--GADAVIAEGMEAGGHIGKLTTMTLVRQVATAISIPVIAAGGIADGEGAAAGFMLGAEAVQV 190 (332)
T ss_dssp EESSHHHHHHHHH-T--TCSCEEEECTTSSEECCSSCHHHHHHHHHHHCSSCEEEESSCCSHHHHHHHHHTTCSEEEE
T ss_pred EeCCHHHHHHHHH-c--CCCEEEEECCCCCCCCCCccHHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCCEEEe
Confidence 4567777665544 3 389888863211 13467888888766689999888888899999999999998763
No 333
>1eto_A FIS, factor for inversion stimulation; transcriptional activation region, DNA-binding protein, transcription activator; 1.90A {Escherichia coli} SCOP: a.4.1.12 PDB: 1etq_A 1ety_A 1fia_A 3fis_A 3iv5_A* 3jr9_A* 3jra_A* 3jrb_A* 3jrc_A* 3jrd_A* 3jre_A* 3jrf_A* 3jrg_A* 3jrh_A* 3jri_A* 1f36_A 1etv_A 1etk_A 1etx_A 1fip_A ...
Probab=73.38 E-value=1.1 Score=29.99 Aligned_cols=30 Identities=13% Similarity=-0.030 Sum_probs=24.0
Q ss_pred HHHHhhCCCCCCHHHHHHHhhhhhhhhhcc
Q 027234 180 KILELMNIPGLTRENVASHLQKHRLYLSRL 209 (226)
Q Consensus 180 ~I~~~~~~~~lt~~~va~~l~~~r~~l~r~ 209 (226)
.|.+.+...+-++...|..||++|..|||.
T Consensus 62 ~I~~aL~~~~gn~~~AA~~LGIsR~TL~rk 91 (98)
T 1eto_A 62 LLDMVMQYTLGNQTRAALMMGINRGTLRKK 91 (98)
T ss_dssp HHHHHHHHTTTCHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHhCCCHHHHHHH
Confidence 455555556778999999999999999974
No 334
>3eus_A DNA-binding protein; structural genomics, PSI2,MCSG, protein structure initiative, midwest center for structural genomic binding; 1.80A {Silicibacter pomeroyi}
Probab=73.19 E-value=1 Score=28.92 Aligned_cols=29 Identities=21% Similarity=0.387 Sum_probs=23.7
Q ss_pred HHHhhCCCCCCHHHHHHHhhhhhhhhhcc
Q 027234 181 ILELMNIPGLTRENVASHLQKHRLYLSRL 209 (226)
Q Consensus 181 I~~~~~~~~lt~~~va~~l~~~r~~l~r~ 209 (226)
|.+.....++|.+++|..+++|+++++++
T Consensus 19 l~~~R~~~gltq~elA~~~gis~~~is~~ 47 (86)
T 3eus_A 19 LRQARLDAGLTQADLAERLDKPQSFVAKV 47 (86)
T ss_dssp HHHHHHHTTCCHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHhCcCHHHHHHH
Confidence 33444456999999999999999999986
No 335
>2xpw_A Tetracycline repressor protein class D; transcription, transcription regulator, helix-turn-helix, ME coordination; HET: OTC MES; 1.44A {Escherichia coli} PDB: 1bjy_A* 1bj0_A 1du7_A* 1ork_A* 2fj1_A* 1bjz_A* 2o7o_A* 2x6o_A* 2x9d_A* 2xps_A* 2xpt_A* 2vke_A* 2xpu_A* 2xpv_A* 2tct_A* 2xb5_A* 2trt_A* 2xrl_A* 1qpi_A* 1a6i_A ...
Probab=72.84 E-value=1.2 Score=33.68 Aligned_cols=41 Identities=24% Similarity=0.242 Sum_probs=30.9
Q ss_pred HHHHHHHHHhCCCCCCchHHHHhhCCCCCCHHHHHHHhhhhhhhhhcccCC
Q 027234 162 QQFVSAVKELGFDKAGPKKILELMNIPGLTRENVASHLQKHRLYLSRLSGV 212 (226)
Q Consensus 162 ~~Fi~~~~~~g~~~~~p~~I~~~~~~~~lt~~~va~~l~~~r~~l~r~~~~ 212 (226)
++++.++.+ ++..-...++|+..||.++++++..||+-|+.
T Consensus 6 ~~Il~aA~~----------l~~~~G~~~~s~~~IA~~~Gvs~~slY~hF~~ 46 (207)
T 2xpw_A 6 ESVIDAALE----------LLNETGIDGLTTRKLAQKLGIEQPTLYWHVKN 46 (207)
T ss_dssp HHHHHHHHH----------HHHHHHHHHCCHHHHHHHHTCCHHHHHHHCCC
T ss_pred HHHHHHHHH----------HHHhcCcccCCHHHHHHHhCCCcchHHHhcCC
Confidence 456666666 33333455799999999999999999997764
No 336
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=72.84 E-value=1.2 Score=30.90 Aligned_cols=39 Identities=18% Similarity=0.286 Sum_probs=27.0
Q ss_pred hCCCCCCchHHHHhhCCCC--CCHHHHHHHhhhhhhhhhcc
Q 027234 171 LGFDKAGPKKILELMNIPG--LTRENVASHLQKHRLYLSRL 209 (226)
Q Consensus 171 ~g~~~~~p~~I~~~~~~~~--lt~~~va~~l~~~r~~l~r~ 209 (226)
+|+....-..+..+...++ +|..+||..++++++..||.
T Consensus 22 ~gLt~~e~~il~~L~~~~~~~~t~~eLa~~l~~s~sTV~r~ 62 (123)
T 3r0a_A 22 LNLTKADLNVMKSFLNEPDRWIDTDALSKSLKLDVSTVQRS 62 (123)
T ss_dssp HTCCHHHHHHHHHHHHSTTCCEEHHHHHHHHTSCHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHCCCCCcCHHHHHHHHCcCHHHHHHH
Confidence 4555433333334444556 99999999999999988873
No 337
>3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A {Mycobacterium gastri}
Probab=72.77 E-value=2.4 Score=31.94 Aligned_cols=81 Identities=14% Similarity=0.026 Sum_probs=52.2
Q ss_pred CCHHHHHHHHHhCCCCceEEEEccCCCC--CCHHHHHHHHhcC-CCCcEEE--EeccC-CHHHHHHHHhCCcceEEeCCC
Q 027234 9 NRAEIALDMLRTNKNGYDIVISDVHMPD--MDGFKLLELVGLE-MDLPVIM--MCAHG-SKEVVMKGVTHDACDYLTKPV 82 (226)
Q Consensus 9 ~~~~eal~~l~~~~~~~DlVl~D~~mp~--~dG~~l~~~l~~~-~~~pvI~--ls~~~-~~~~~~~a~~~ga~~yl~KP~ 82 (226)
.+.+++++.++......|. +++.+|- .+|.++++.++.. ++.|+++ ... + .......+.+.||++...-+.
T Consensus 10 ~~~~~~~~~~~~~~~~v~~--iev~~~~~~~~g~~~i~~l~~~~~~~~i~~~l~~~-di~~~~~~~a~~~Gad~v~vh~~ 86 (207)
T 3ajx_A 10 LSTEAALELAGKVAEYVDI--IELGTPLIKAEGLSVITAVKKAHPDKIVFADMKTM-DAGELEADIAFKAGADLVTVLGS 86 (207)
T ss_dssp SCHHHHHHHHHHHGGGCSE--EEECHHHHHHHCTHHHHHHHHHSTTSEEEEEEEEC-SCHHHHHHHHHHTTCSEEEEETT
T ss_pred CCHHHHHHHHHHhhccCCE--EEECcHHHHhhCHHHHHHHHHhCCCCeEEEEEEec-CccHHHHHHHHhCCCCEEEEecc
Confidence 4788899888765421243 6776653 4677888888754 4788875 332 2 234478899999999886665
Q ss_pred CH-HHHHHHHH
Q 027234 83 RI-EELKNIWQ 92 (226)
Q Consensus 83 ~~-~~L~~~l~ 92 (226)
.. +.+...++
T Consensus 87 ~~~~~~~~~~~ 97 (207)
T 3ajx_A 87 ADDSTIAGAVK 97 (207)
T ss_dssp SCHHHHHHHHH
T ss_pred CChHHHHHHHH
Confidence 54 44444333
No 338
>2pz9_A Putative regulatory protein; structural genomics, transcriptional regulator, PSI, protein structure initiative; 2.80A {Streptomyces coelicolor A3}
Probab=72.76 E-value=1.1 Score=33.99 Aligned_cols=43 Identities=19% Similarity=0.195 Sum_probs=33.3
Q ss_pred hHHHHHHHHHHhCCCCCCchHHHHhhCCCCCCHHHHHHHhhhhhhhhhcccCC
Q 027234 160 LHQQFVSAVKELGFDKAGPKKILELMNIPGLTRENVASHLQKHRLYLSRLSGV 212 (226)
Q Consensus 160 l~~~Fi~~~~~~g~~~~~p~~I~~~~~~~~lt~~~va~~l~~~r~~l~r~~~~ 212 (226)
..++++.++.++ +.+ -.-.++|+++||.+.|+|+..+|+-|+.
T Consensus 31 ~r~~Il~aA~~l---------f~~-~G~~~~s~~~IA~~aGvs~~tlY~~F~s 73 (226)
T 2pz9_A 31 TRQRIVAAAKEE---------FAR-HGIAGARVDRIAKQARTSKERVYAYFRS 73 (226)
T ss_dssp CHHHHHHHHHHH---------HHH-HHHHHCCHHHHHHHTTSCHHHHHHHCSS
T ss_pred HHHHHHHHHHHH---------HHH-hCcccCcHHHHHHHHCCChHHHHHHcCC
Confidence 356788888872 333 3445789999999999999999998864
No 339
>3kkd_A Transcriptional regulator; TETR, structural genomics, PSI-2, structure initiative, midwest center for structural genomic DNA-binding; HET: PGE 15P; 2.10A {Pseudomonas aeruginosa PAO1}
Probab=72.71 E-value=2.4 Score=32.20 Aligned_cols=43 Identities=12% Similarity=0.008 Sum_probs=30.1
Q ss_pred hHHHHHHHHHHhCCCCCCchHHHHhhCCCCCCHHHHHHHhhhhhhhhhcccCC
Q 027234 160 LHQQFVSAVKELGFDKAGPKKILELMNIPGLTRENVASHLQKHRLYLSRLSGV 212 (226)
Q Consensus 160 l~~~Fi~~~~~~g~~~~~p~~I~~~~~~~~lt~~~va~~l~~~r~~l~r~~~~ 212 (226)
-.++++.++.+ ++..-.-.+.|+++||.+.|+|+..+|+-|+.
T Consensus 36 ~r~~Il~AA~~----------lf~~~G~~~~s~~~IA~~AGvs~~tlY~~F~s 78 (237)
T 3kkd_A 36 RRQAILDAAMR----------LIVRDGVRAVRHRAVAAEAQVPLSATTYYFKD 78 (237)
T ss_dssp HHHHHHHHHHH----------HHHHHCGGGCCHHHHHHHHTSCTTTC-----C
T ss_pred HHHHHHHHHHH----------HHHhcChhhcCHHHHHHHhCCChhHHHHHcCC
Confidence 45678888888 33444556899999999999999999998874
No 340
>3ceu_A Thiamine phosphate pyrophosphorylase; TIM barrel-like protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacteroides thetaiotaomicron vpi-5482}
Probab=72.61 E-value=5 Score=30.44 Aligned_cols=68 Identities=12% Similarity=0.066 Sum_probs=46.8
Q ss_pred EECCHHHHHHHHHhCCCCceEEEEccCCCC--------CCHHHHHHHHhcC--CCCcEEEEeccCCHHHHHHHHhCCcce
Q 027234 7 KCNRAEIALDMLRTNKNGYDIVISDVHMPD--------MDGFKLLELVGLE--MDLPVIMMCAHGSKEVVMKGVTHDACD 76 (226)
Q Consensus 7 ~~~~~~eal~~l~~~~~~~DlVl~D~~mp~--------~dG~~l~~~l~~~--~~~pvI~ls~~~~~~~~~~a~~~ga~~ 76 (226)
.|.+.+|+.... . +.|.|.++-..|. .-|++.++.+... ..+|++.+-+-. .+.+.+++..|+++
T Consensus 94 s~~t~~e~~~A~--~--GaDyv~~g~vf~t~sk~~~~~~~g~~~l~~~~~~~~~~iPviaiGGI~-~~nv~~~~~~Ga~g 168 (210)
T 3ceu_A 94 SCHSVEEVKNRK--H--FYDYVFMSPIYDSISKVNYYSTYTAEELREAQKAKIIDSKVMALGGIN-EDNLLEIKDFGFGG 168 (210)
T ss_dssp EECSHHHHHTTG--G--GSSEEEECCCC---------CCCCHHHHHHHHHTTCSSTTEEEESSCC-TTTHHHHHHTTCSE
T ss_pred ecCCHHHHHHHh--h--CCCEEEECCcCCCCCCCCCCCCCCHHHHHHHHHhcCCCCCEEEECCCC-HHHHHHHHHhCCCE
Confidence 567788876543 2 3899988765442 2367788877654 579998876654 67778888999998
Q ss_pred EEe
Q 027234 77 YLT 79 (226)
Q Consensus 77 yl~ 79 (226)
.-.
T Consensus 169 Vav 171 (210)
T 3ceu_A 169 AVV 171 (210)
T ss_dssp EEE
T ss_pred EEE
Confidence 753
No 341
>2eby_A Putative HTH-type transcriptional regulator YBAQ; hypothetical protein, JW0472, structural genomics, NPPSFA; 2.25A {Escherichia coli}
Probab=72.43 E-value=2.1 Score=28.86 Aligned_cols=32 Identities=25% Similarity=0.233 Sum_probs=26.6
Q ss_pred HHHH-hhCCCCCCHHHHHHHhhhhhhhhhcccC
Q 027234 180 KILE-LMNIPGLTRENVASHLQKHRLYLSRLSG 211 (226)
Q Consensus 180 ~I~~-~~~~~~lt~~~va~~l~~~r~~l~r~~~ 211 (226)
.|.. .+...++|..++|..+++++++++++-.
T Consensus 14 ~l~~~~r~~~glsq~~lA~~~gis~~~is~~e~ 46 (113)
T 2eby_A 14 ILLYEYLEPLDLKINELAELLHVHRNSVSALIN 46 (113)
T ss_dssp HHHHHTTTTTTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 4554 6778899999999999999999998643
No 342
>1t33_A Putative transcriptional repressor (TETR/ACRR FAM; structural genomics, TETR/CCRR FA helix turn helix DNA binding domain, PSI; 2.20A {Salmonella typhimurium} SCOP: a.4.1.9 a.121.1.1
Probab=72.36 E-value=2.1 Score=31.94 Aligned_cols=42 Identities=12% Similarity=0.127 Sum_probs=33.3
Q ss_pred hHHHHHHHHHHhCCCCCCchHHHHhhCCCCCCHHHHHHHhhhhhhhhhcccCC
Q 027234 160 LHQQFVSAVKELGFDKAGPKKILELMNIPGLTRENVASHLQKHRLYLSRLSGV 212 (226)
Q Consensus 160 l~~~Fi~~~~~~g~~~~~p~~I~~~~~~~~lt~~~va~~l~~~r~~l~r~~~~ 212 (226)
..++++.++.+ +...-.-. .|+++||.+.|+|+..+|+-|+.
T Consensus 13 ~r~~Il~aA~~----------lf~~~G~~-~s~~~IA~~agvs~~tiY~~F~s 54 (224)
T 1t33_A 13 AKSQLIAAALA----------QFGEYGLH-ATTRDIAALAGQNIAAITYYFGS 54 (224)
T ss_dssp HHHHHHHHHHH----------HHHHHGGG-SCHHHHHHHHTSCHHHHHHHHSS
T ss_pred HHHHHHHHHHH----------HHHHhCcc-ccHHHHHHHhCCCHHHHHHhcCC
Confidence 34677888877 34445666 99999999999999999998764
No 343
>3vk0_A NHTF, transcriptional regulator; HTH motif, XRE transcription factor, DNA binding protein; 1.88A {Neisseria meningitidis}
Probab=72.04 E-value=1.2 Score=30.29 Aligned_cols=30 Identities=20% Similarity=0.259 Sum_probs=24.1
Q ss_pred HHHhhCCCCCCHHHHHHHhhhhhhhhhccc
Q 027234 181 ILELMNIPGLTRENVASHLQKHRLYLSRLS 210 (226)
Q Consensus 181 I~~~~~~~~lt~~~va~~l~~~r~~l~r~~ 210 (226)
|.+....-++|+.++|..+++++++++++-
T Consensus 26 lr~~R~~~gltq~elA~~~gis~~~is~~E 55 (114)
T 3vk0_A 26 MRLFRVNKGWSQEELARQCGLDRTYVSAVE 55 (114)
T ss_dssp HHHHHHHTTCCHHHHHHHHTCCHHHHHHHT
T ss_pred HHHHHHHcCCCHHHHHHHHCcCHHHHHHHH
Confidence 444444568999999999999999999863
No 344
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=71.91 E-value=0.84 Score=28.77 Aligned_cols=28 Identities=25% Similarity=0.215 Sum_probs=22.6
Q ss_pred HhhCCCCCCHHHHHHHhhhhhhhhhccc
Q 027234 183 ELMNIPGLTRENVASHLQKHRLYLSRLS 210 (226)
Q Consensus 183 ~~~~~~~lt~~~va~~l~~~r~~l~r~~ 210 (226)
+.+...++|..++|..+++++++++++-
T Consensus 19 ~~r~~~gltq~~lA~~~gvs~~~is~~e 46 (80)
T 3kz3_A 19 KKKNELGLSYESVADKMGMGQSAVAALF 46 (80)
T ss_dssp HHHHHHTCCHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHhCcCHHHHHHHH
Confidence 3344558999999999999999988853
No 345
>1lmb_3 Protein (lambda repressor); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 1.80A {Enterobacteria phage lambda} SCOP: a.35.1.2 PDB: 1lrp_A 1rio_A 1lli_A*
Probab=71.84 E-value=1.8 Score=27.85 Aligned_cols=31 Identities=23% Similarity=0.170 Sum_probs=24.4
Q ss_pred HHHhhCCCCCCHHHHHHHhhhhhhhhhcccC
Q 027234 181 ILELMNIPGLTRENVASHLQKHRLYLSRLSG 211 (226)
Q Consensus 181 I~~~~~~~~lt~~~va~~l~~~r~~l~r~~~ 211 (226)
+.+.+...++|..++|..+++++++++++-.
T Consensus 22 l~~~R~~~glsq~~lA~~~gis~~~is~~e~ 52 (92)
T 1lmb_3 22 YEKKKNELGLSQESVADKMGMGQSGVGALFN 52 (92)
T ss_dssp HHHHHHHHTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHHHHHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 4344445589999999999999999998643
No 346
>2gfn_A HTH-type transcriptional regulator PKSA related P; transcriptional regulato PSI-2, regulatory protein, structural genomics, protein STR initiative; 1.90A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=71.81 E-value=2.6 Score=31.49 Aligned_cols=43 Identities=19% Similarity=0.150 Sum_probs=33.9
Q ss_pred hHHHHHHHHHHhCCCCCCchHHHHhhCCCCCCHHHHHHHhhhhhhhhhcccCC
Q 027234 160 LHQQFVSAVKELGFDKAGPKKILELMNIPGLTRENVASHLQKHRLYLSRLSGV 212 (226)
Q Consensus 160 l~~~Fi~~~~~~g~~~~~p~~I~~~~~~~~lt~~~va~~l~~~r~~l~r~~~~ 212 (226)
-.++++.++.+ +...-.-.+.|+++||.+.|+|+..+|+-|+.
T Consensus 10 ~r~~Il~aA~~----------lf~~~G~~~~s~~~IA~~aGvs~gtlY~yF~s 52 (209)
T 2gfn_A 10 RRRALADAVLA----------LIAREGISAVTTRAVAEESGWSTGVLNHYFGS 52 (209)
T ss_dssp HHHHHHHHHHH----------HHHHHCGGGCCHHHHHHHHSSCHHHHHHHTSS
T ss_pred HHHHHHHHHHH----------HHHHhCcccCCHHHHHHHHCCCcchHHhcCCC
Confidence 34678888887 34444556899999999999999999998864
No 347
>3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum}
Probab=71.75 E-value=17 Score=30.67 Aligned_cols=65 Identities=14% Similarity=0.104 Sum_probs=45.0
Q ss_pred HHHHHHHHhCCCCceEEEEccCCCCCCH-HHHHHHHhcCCCCcEEEEeccCCHHHHHHHHhCCcceEEe
Q 027234 12 EIALDMLRTNKNGYDIVISDVHMPDMDG-FKLLELVGLEMDLPVIMMCAHGSKEVVMKGVTHDACDYLT 79 (226)
Q Consensus 12 ~eal~~l~~~~~~~DlVl~D~~mp~~dG-~~l~~~l~~~~~~pvI~ls~~~~~~~~~~a~~~ga~~yl~ 79 (226)
.+.++.+-+.. +|+|++|.....-.. .++++.++....+|||+= .....+.+..+.+.||+....
T Consensus 146 ~e~~~~lveaG--vdvIvldta~G~~~~~~e~I~~ik~~~~i~Vi~g-~V~t~e~A~~a~~aGAD~I~v 211 (400)
T 3ffs_A 146 IERAKLLVEAG--VDVIVLDSAHGHSLNIIRTLKEIKSKMNIDVIVG-NVVTEEATKELIENGADGIKV 211 (400)
T ss_dssp CHHHHHHHHHT--CSEEEECCSCCSBHHHHHHHHHHHTTCCCEEEEE-EECSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHcC--CCEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEe-ecCCHHHHHHHHHcCCCEEEE
Confidence 34455554444 899999876543222 677888876567887752 234578888999999998887
No 348
>2p10_A MLL9387 protein; putative phosphonopyruvate hydrolase, structural genomics, J center for structural genomics, JCSG; HET: MSE; 2.15A {Mesorhizobium loti} SCOP: c.1.12.9
Probab=71.71 E-value=20 Score=28.70 Aligned_cols=74 Identities=12% Similarity=0.135 Sum_probs=48.6
Q ss_pred EEEEECCHHHHHHHHHhCCCCceEEEEccCCC--CCCH----------HHHHHHH----h-cCCCCcEEEEe-ccCCHHH
Q 027234 4 SVTKCNRAEIALDMLRTNKNGYDIVISDVHMP--DMDG----------FKLLELV----G-LEMDLPVIMMC-AHGSKEV 65 (226)
Q Consensus 4 ~V~~~~~~~eal~~l~~~~~~~DlVl~D~~mp--~~dG----------~~l~~~l----~-~~~~~pvI~ls-~~~~~~~ 65 (226)
.+.++.|.++|..+.... ||+|++..-+. +.-| .+.++.+ + .++++.|+.-. +-...+.
T Consensus 166 Ti~~v~~~eeA~amA~ag---pDiI~~h~glT~gglIG~~~avs~~~~~e~i~~i~~a~~~vnpdvivLc~gGpIstpeD 242 (286)
T 2p10_A 166 TTPYVFSPEDAVAMAKAG---ADILVCHMGLTTGGAIGARSGKSMDDCVSLINECIEAARTIRDDIIILSHGGPIANPED 242 (286)
T ss_dssp ECCEECSHHHHHHHHHHT---CSEEEEECSCC---------CCCHHHHHHHHHHHHHHHHHHCSCCEEEEESTTCCSHHH
T ss_pred EEEecCCHHHHHHHHHcC---CCEEEECCCCCCCCcccCCCcccHHHhHHHHHHHHHHHHHhCCCcEEEecCCCCCCHHH
Confidence 456788999999887643 89999876532 3222 3344333 2 34566444444 3467889
Q ss_pred HHHHHhC--CcceEEeC
Q 027234 66 VMKGVTH--DACDYLTK 80 (226)
Q Consensus 66 ~~~a~~~--ga~~yl~K 80 (226)
+..+++. |+++|+.-
T Consensus 243 v~~~l~~t~G~~G~~gA 259 (286)
T 2p10_A 243 ARFILDSCQGCHGFYGA 259 (286)
T ss_dssp HHHHHHHCTTCCEEEES
T ss_pred HHHHHhcCCCccEEEee
Confidence 9999998 99999975
No 349
>2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A*
Probab=71.51 E-value=4.4 Score=30.60 Aligned_cols=81 Identities=16% Similarity=0.167 Sum_probs=52.5
Q ss_pred ECCHHHHHHHHHhCCCCceEEEEccCCC-CCCHHHHHHHHhcCC--CCcEEEEeccCCHHHHHHHHhCCcceEEeC-CC-
Q 027234 8 CNRAEIALDMLRTNKNGYDIVISDVHMP-DMDGFKLLELVGLEM--DLPVIMMCAHGSKEVVMKGVTHDACDYLTK-PV- 82 (226)
Q Consensus 8 ~~~~~eal~~l~~~~~~~DlVl~D~~mp-~~dG~~l~~~l~~~~--~~pvI~ls~~~~~~~~~~a~~~ga~~yl~K-P~- 82 (226)
+.+..++..... .++|.|.+ .| ...|++.++.++... ++||+...+-. .+.+.+++..||+++..= -+
T Consensus 108 ~~t~~e~~~a~~---~G~d~v~v---~~t~~~g~~~~~~l~~~~~~~ipvia~GGI~-~~~i~~~~~~Ga~gv~vGsai~ 180 (212)
T 2v82_A 108 CATATEAFTALE---AGAQALKI---FPSSAFGPQYIKALKAVLPSDIAVFAVGGVT-PENLAQWIDAGCAGAGLGSDLY 180 (212)
T ss_dssp ECSHHHHHHHHH---TTCSEEEE---TTHHHHCHHHHHHHHTTSCTTCEEEEESSCC-TTTHHHHHHHTCSEEEECTTTC
T ss_pred cCCHHHHHHHHH---CCCCEEEE---ecCCCCCHHHHHHHHHhccCCCeEEEeCCCC-HHHHHHHHHcCCCEEEEChHHh
Confidence 678888876654 23899886 22 123678888876443 48888777665 677788888999998743 22
Q ss_pred CH----HHHHHHHHHHH
Q 027234 83 RI----EELKNIWQHVV 95 (226)
Q Consensus 83 ~~----~~L~~~l~~~~ 95 (226)
.. ++....++.+.
T Consensus 181 ~~~~~~~d~~~~~~~l~ 197 (212)
T 2v82_A 181 RAGQSVERTAQQAAAFV 197 (212)
T ss_dssp CTTCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 21 45555555543
No 350
>1bja_A Transcription regulatory protein MOTA; activation domain, middle mode transcription, alpha helical structure, transcription regulation; 2.19A {Enterobacteria phage T4} SCOP: a.4.5.9 PDB: 1i1s_A
Probab=71.51 E-value=0.99 Score=30.07 Aligned_cols=42 Identities=7% Similarity=0.052 Sum_probs=31.4
Q ss_pred HHHHhCCCCCCchHHHHhhCCCCCCHHHHHH-Hhhhhhhhhhc
Q 027234 167 AVKELGFDKAGPKKILELMNIPGLTRENVAS-HLQKHRLYLSR 208 (226)
Q Consensus 167 ~~~~~g~~~~~p~~I~~~~~~~~lt~~~va~-~l~~~r~~l~r 208 (226)
.+++.|+....-..+..+.+.+..|..+||. .+++.|+.++|
T Consensus 8 ~~~~~~L~~~QfsiL~~L~~~~~~t~~~Lae~~l~~drstvsr 50 (95)
T 1bja_A 8 KASNDVLNEKTATILITIAKKDFITAAEVREVHPDLGNAVVNS 50 (95)
T ss_dssp HHTTTSSCHHHHHHHHHHHHSTTBCHHHHHHTCTTSCHHHHHH
T ss_pred hHHhcCCCHHHHHHHHHHHHCCCCCHHHHHHHHhcccHHHHHH
Confidence 3445555544444555666788999999999 99999999887
No 351
>2wus_R RODZ, putative uncharacterized protein; structural protein, cell WALL morphogenesis, bacterial cytos bacterial actin; 2.90A {Thermotoga maritima}
Probab=71.42 E-value=1.4 Score=30.13 Aligned_cols=29 Identities=10% Similarity=-0.009 Sum_probs=24.3
Q ss_pred HHHhhCCCCCCHHHHHHHhhhhhhhhhcc
Q 027234 181 ILELMNIPGLTRENVASHLQKHRLYLSRL 209 (226)
Q Consensus 181 I~~~~~~~~lt~~~va~~l~~~r~~l~r~ 209 (226)
|.+....-++|++++|..+++++++++++
T Consensus 12 Lr~~R~~~glSq~eLA~~~gis~~~is~i 40 (112)
T 2wus_R 12 FRKKREERRITLLDASLFTNINPSKLKRI 40 (112)
T ss_dssp HHHHHHTTTCCHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHCcCHHHHHHH
Confidence 55555567999999999999999999886
No 352
>2jvl_A TRMBF1; coactivator, helix-turn-helix, Pro binding, transcription; NMR {Trichoderma reesei}
Probab=71.34 E-value=2.4 Score=28.52 Aligned_cols=30 Identities=10% Similarity=0.154 Sum_probs=25.0
Q ss_pred HHHhhC--CCCCCHHHHHHHhhhhhhhhhccc
Q 027234 181 ILELMN--IPGLTRENVASHLQKHRLYLSRLS 210 (226)
Q Consensus 181 I~~~~~--~~~lt~~~va~~l~~~r~~l~r~~ 210 (226)
|.+.+. ..++|..++|..+++++++++++-
T Consensus 39 lk~~R~~~~~glsq~elA~~~gis~~~is~~E 70 (107)
T 2jvl_A 39 IEQGRQKFEPTMTQAELGKEIGETAATVASYE 70 (107)
T ss_dssp HHHHHTTSSSCCCHHHHHHHHTCCHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHH
Confidence 555566 679999999999999999998863
No 353
>1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A
Probab=71.17 E-value=11 Score=29.40 Aligned_cols=70 Identities=16% Similarity=0.235 Sum_probs=44.8
Q ss_pred CCceEEEEccCCC--CCC--------------------HHHHHHHHhcCCCCcEEEEeccCCHH---HHHHHHhCCcceE
Q 027234 23 NGYDIVISDVHMP--DMD--------------------GFKLLELVGLEMDLPVIMMCAHGSKE---VVMKGVTHDACDY 77 (226)
Q Consensus 23 ~~~DlVl~D~~mp--~~d--------------------G~~l~~~l~~~~~~pvI~ls~~~~~~---~~~~a~~~ga~~y 77 (226)
.+.|.|-+++-.. -+| ++++++.++...++|+++++- .+.. ....+...|++++
T Consensus 44 ~Gad~ielg~p~~dp~~dg~~i~~a~~~al~~g~~~~~~~~~i~~ir~~~~~Pv~~m~~-~~~~~~~~~~~a~~aGadgv 122 (262)
T 1rd5_A 44 CGADVIELGVPCSDPYIDGPIIQASVARALASGTTMDAVLEMLREVTPELSCPVVLLSY-YKPIMFRSLAKMKEAGVHGL 122 (262)
T ss_dssp TTCSSEEEECCCSCCTTSCHHHHHHHHHHHTTTCCHHHHHHHHHHHGGGCSSCEEEECC-SHHHHSCCTHHHHHTTCCEE
T ss_pred cCCCEEEECCCCCCcccCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCEEEEec-CcHHHHHHHHHHHHcCCCEE
Confidence 3489998886432 333 466778887667899988752 2221 1233889999999
Q ss_pred EeCCCCHHHHHHHHHH
Q 027234 78 LTKPVRIEELKNIWQH 93 (226)
Q Consensus 78 l~KP~~~~~L~~~l~~ 93 (226)
+.-....+++...+..
T Consensus 123 ~v~d~~~~~~~~~~~~ 138 (262)
T 1rd5_A 123 IVPDLPYVAAHSLWSE 138 (262)
T ss_dssp ECTTCBTTTHHHHHHH
T ss_pred EEcCCChhhHHHHHHH
Confidence 9866555555444443
No 354
>3l0g_A Nicotinate-nucleotide pyrophosphorylase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.05A {Ehrlichia chaffeensis}
Probab=70.97 E-value=17 Score=29.35 Aligned_cols=67 Identities=13% Similarity=0.092 Sum_probs=45.8
Q ss_pred EEEECCHHHHHHHHHhCCCCceEEEEccCCCCCCHHHHHHHHhcCCCCcEEEEeccCCHHHHHHHHhCCcceEE
Q 027234 5 VTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVGLEMDLPVIMMCAHGSKEVVMKGVTHDACDYL 78 (226)
Q Consensus 5 V~~~~~~~eal~~l~~~~~~~DlVl~D~~mp~~dG~~l~~~l~~~~~~pvI~ls~~~~~~~~~~a~~~ga~~yl 78 (226)
.+.|.+.+|+.+.+... .|+|++|- |+--++-+.++....-..+..|+.-+.+.+......|+|.+-
T Consensus 211 eVEv~tl~e~~eAl~aG---aDiImLDn----~s~~~l~~av~~~~~~v~leaSGGIt~~~i~~~A~tGVD~Is 277 (300)
T 3l0g_A 211 AIECDNISQVEESLSNN---VDMILLDN----MSISEIKKAVDIVNGKSVLEVSGCVNIRNVRNIALTGVDYIS 277 (300)
T ss_dssp EEEESSHHHHHHHHHTT---CSEEEEES----CCHHHHHHHHHHHTTSSEEEEESSCCTTTHHHHHTTTCSEEE
T ss_pred EEEECCHHHHHHHHHcC---CCEEEECC----CCHHHHHHHHHhhcCceEEEEECCCCHHHHHHHHHcCCCEEE
Confidence 34788999999998853 89999994 333333333331112345668888888888888888987543
No 355
>1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural genomics, epimerase, PSI, structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5
Probab=70.94 E-value=15 Score=27.95 Aligned_cols=68 Identities=19% Similarity=0.126 Sum_probs=48.3
Q ss_pred EECCHHHHHHHHHhCCCCceEE---EEccCCCC-----CCHHHHHHHHhcCCCCcEEEEeccCCHHHHHHHHhCCcceEE
Q 027234 7 KCNRAEIALDMLRTNKNGYDIV---ISDVHMPD-----MDGFKLLELVGLEMDLPVIMMCAHGSKEVVMKGVTHDACDYL 78 (226)
Q Consensus 7 ~~~~~~eal~~l~~~~~~~DlV---l~D~~mp~-----~dG~~l~~~l~~~~~~pvI~ls~~~~~~~~~~a~~~ga~~yl 78 (226)
.+.+.+++...... +.|.| +..+. |+ ..++++++.++.. ++||+...+-.+.+.+.+++..||++++
T Consensus 139 ~~~t~~ea~~a~~~---Gad~i~~~v~g~~-~~~~~~~~~~~~~i~~~~~~-~ipvia~GGI~s~~~~~~~~~~Gad~v~ 213 (234)
T 1yxy_A 139 DISTFDEGLVAHQA---GIDFVGTTLSGYT-PYSRQEAGPDVALIEALCKA-GIAVIAEGKIHSPEEAKKINDLGVAGIV 213 (234)
T ss_dssp ECSSHHHHHHHHHT---TCSEEECTTTTSS-TTSCCSSSCCHHHHHHHHHT-TCCEEEESCCCSHHHHHHHHTTCCSEEE
T ss_pred eCCCHHHHHHHHHc---CCCEEeeeccccC-CCCcCCCCCCHHHHHHHHhC-CCCEEEECCCCCHHHHHHHHHCCCCEEE
Confidence 45667777766553 37887 33321 21 1246778888755 8999988887779999999999999987
Q ss_pred e
Q 027234 79 T 79 (226)
Q Consensus 79 ~ 79 (226)
.
T Consensus 214 v 214 (234)
T 1yxy_A 214 V 214 (234)
T ss_dssp E
T ss_pred E
Confidence 5
No 356
>3loc_A HTH-type transcriptional regulator RUTR; helix-turn-helix, putative transcriptional regulator, dimer, structural genomics, PSI; HET: MSE; 2.50A {Escherichia coli}
Probab=70.70 E-value=1.4 Score=32.54 Aligned_cols=42 Identities=14% Similarity=0.104 Sum_probs=32.7
Q ss_pred HHHHHHHHHHhCCCCCCchHHHHhhCCCCCCHHHHHHHhhhhhhhhhcccCC
Q 027234 161 HQQFVSAVKELGFDKAGPKKILELMNIPGLTRENVASHLQKHRLYLSRLSGV 212 (226)
Q Consensus 161 ~~~Fi~~~~~~g~~~~~p~~I~~~~~~~~lt~~~va~~l~~~r~~l~r~~~~ 212 (226)
.++++.++.++ +.+ -.-.+.|+++||.+.|+|+..+|+-|+.
T Consensus 20 R~~Il~aA~~l---------f~~-~G~~~~s~~~IA~~aGvs~~tlY~~F~s 61 (212)
T 3loc_A 20 KKAILSAALDT---------FSQ-FGFHGTRLEQIAELAGVSKTNLLYYFPS 61 (212)
T ss_dssp HHHHHHHHHHH---------HHH-HHHHHCCHHHHHHHHTSCHHHHHHHSSS
T ss_pred HHHHHHHHHHH---------HHH-hCcccCCHHHHHHHHCcCHHHHhhhCCC
Confidence 45778888772 333 3445789999999999999999998864
No 357
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=70.49 E-value=0.92 Score=27.91 Aligned_cols=30 Identities=13% Similarity=0.122 Sum_probs=22.8
Q ss_pred HHHhhCC--CCCCHHHHHHHhhhhhhhhhccc
Q 027234 181 ILELMNI--PGLTRENVASHLQKHRLYLSRLS 210 (226)
Q Consensus 181 I~~~~~~--~~lt~~~va~~l~~~r~~l~r~~ 210 (226)
|++.+.. ..++..+||..++++|+.+.|..
T Consensus 15 IL~~L~~~~~~~s~~eLA~~lglsr~tv~~~l 46 (67)
T 2heo_A 15 ILQVLSDDGGPVAIFQLVKKCQVPKKTLNQVL 46 (67)
T ss_dssp HHHHHHHHCSCEEHHHHHHHHCSCHHHHHHHH
T ss_pred HHHHHHHcCCCcCHHHHHHHHCcCHHHHHHHH
Confidence 5554432 46899999999999999887753
No 358
>1viz_A PCRB protein homolog; structural genomics, unknown function; 1.85A {Bacillus subtilis} SCOP: c.1.4.1
Probab=70.23 E-value=8.8 Score=30.01 Aligned_cols=59 Identities=14% Similarity=0.126 Sum_probs=0.0
Q ss_pred HHHHHHHHhCCCCceEEEEccCCCC--CCHHHHHHHHhcCCCCcEEEEeccCCHHHHHHHHhCCcceEEe
Q 027234 12 EIALDMLRTNKNGYDIVISDVHMPD--MDGFKLLELVGLEMDLPVIMMCAHGSKEVVMKGVTHDACDYLT 79 (226)
Q Consensus 12 ~eal~~l~~~~~~~DlVl~D~~mp~--~dG~~l~~~l~~~~~~pvI~ls~~~~~~~~~~a~~~ga~~yl~ 79 (226)
.++++.+.+.. .|+|.+-..-.- .+.+++++.+|. .++|+|+++... ..+..|+++||.
T Consensus 23 ~~~~~~l~~~G--aD~ielG~S~Gvt~~~~~~~v~~ir~-~~~Pivlm~y~~------n~i~~G~dg~ii 83 (240)
T 1viz_A 23 DEQLEILCESG--TDAVIIGGSDGVTEDNVLRMMSKVRR-FLVPCVLEVSAI------EAIVPGFDLYFI 83 (240)
T ss_dssp HHHHHHHHTSC--CSEEEECC----CHHHHHHHHHHHTT-SSSCEEEECSCG------GGCCSCCSEEEE
T ss_pred HHHHHHHHHcC--CCEEEECCCCCCCHHHHHHHHHHhhC-cCCCEEEecCcc------ccccCCCCEEEE
No 359
>4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A
Probab=70.06 E-value=21 Score=29.71 Aligned_cols=69 Identities=16% Similarity=0.143 Sum_probs=49.3
Q ss_pred EECCHHHHHHHHHhCCCCceEEEEccCCCC------------CCHHHHHHHHh---cCCCCcEEEEeccCCHHHHHHHHh
Q 027234 7 KCNRAEIALDMLRTNKNGYDIVISDVHMPD------------MDGFKLLELVG---LEMDLPVIMMCAHGSKEVVMKGVT 71 (226)
Q Consensus 7 ~~~~~~eal~~l~~~~~~~DlVl~D~~mp~------------~dG~~l~~~l~---~~~~~pvI~ls~~~~~~~~~~a~~ 71 (226)
.+.+.++|..+.+.. .|.|.+-+. |+ ...++++..+. ...++|||.--+-.+...+.+++.
T Consensus 156 ~v~t~e~A~~a~~aG---AD~I~vG~g-pGs~~~tr~~~g~g~p~~~~l~~v~~~~~~~~iPVIA~GGI~~~~di~kala 231 (366)
T 4fo4_A 156 NVATAEGARALIEAG---VSAVKVGIG-PGSICTTRIVTGVGVPQITAIADAAGVANEYGIPVIADGGIRFSGDISKAIA 231 (366)
T ss_dssp EECSHHHHHHHHHHT---CSEEEECSS-CSTTBCHHHHHCCCCCHHHHHHHHHHHHGGGTCCEEEESCCCSHHHHHHHHH
T ss_pred eeCCHHHHHHHHHcC---CCEEEEecC-CCCCCCcccccCcccchHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHHH
Confidence 577888888877643 788888321 21 23455555553 245799998888878899999999
Q ss_pred CCcceEEe
Q 027234 72 HDACDYLT 79 (226)
Q Consensus 72 ~ga~~yl~ 79 (226)
+||++...
T Consensus 232 ~GAd~V~v 239 (366)
T 4fo4_A 232 AGASCVMV 239 (366)
T ss_dssp TTCSEEEE
T ss_pred cCCCEEEE
Confidence 99998764
No 360
>2f6u_A GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate synthase; non-canonical TIM-barrel, prenyltransferase, archaeal lipid synthesis, dimer; HET: CIT; 1.55A {Archaeoglobus fulgidus} SCOP: c.1.4.1 PDB: 2f6x_A*
Probab=69.96 E-value=6.9 Score=30.49 Aligned_cols=61 Identities=18% Similarity=0.184 Sum_probs=42.8
Q ss_pred HHHHHHHHhCCCCceEEEEccCCC--CCCHHHHHHHHhcCCCCcEEEEeccCCHHHHHHHHhCCcceEEeCC
Q 027234 12 EIALDMLRTNKNGYDIVISDVHMP--DMDGFKLLELVGLEMDLPVIMMCAHGSKEVVMKGVTHDACDYLTKP 81 (226)
Q Consensus 12 ~eal~~l~~~~~~~DlVl~D~~mp--~~dG~~l~~~l~~~~~~pvI~ls~~~~~~~~~~a~~~ga~~yl~KP 81 (226)
.++++.+.+. +.|+|.+-+... ..+-+++++.++. .++|+|+++...+ .+..|++++|.--
T Consensus 23 ~~~~~~l~~~--GaD~IelG~S~g~t~~~~~~~v~~ir~-~~~Pivl~~y~~n------~i~~gvDg~iipd 85 (234)
T 2f6u_A 23 DEIIKAVADS--GTDAVMISGTQNVTYEKARTLIEKVSQ-YGLPIVVEPSDPS------NVVYDVDYLFVPT 85 (234)
T ss_dssp HHHHHHHHTT--TCSEEEECCCTTCCHHHHHHHHHHHTT-SCCCEEECCSSCC------CCCCCSSEEEEEE
T ss_pred HHHHHHHHHc--CCCEEEECCCCCCCHHHHHHHHHHhcC-CCCCEEEecCCcc------hhhcCCCEEEEcc
Confidence 4566666664 389999987422 1235667777777 7899999988742 2378999999763
No 361
>3mlf_A Transcriptional regulator; structural genomics, helix-turn-helix XRE-family like protei transcription regulator, PSI-2; 2.60A {Staphylococcus aureus subsp}
Probab=69.83 E-value=1.4 Score=29.99 Aligned_cols=32 Identities=19% Similarity=0.232 Sum_probs=26.3
Q ss_pred chHHHHhhCCCCCCHHHHHHHhhhhhhhhhcc
Q 027234 178 PKKILELMNIPGLTRENVASHLQKHRLYLSRL 209 (226)
Q Consensus 178 p~~I~~~~~~~~lt~~~va~~l~~~r~~l~r~ 209 (226)
.+.|.+.+..-++|..++|..+++++++++++
T Consensus 25 g~~Lk~~R~~~gltq~elA~~~gis~~~is~~ 56 (111)
T 3mlf_A 25 MKTLKELRTDYGLTQKELGDLFKVSSRTIQNM 56 (111)
T ss_dssp CEEHHHHHHHTTCCHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHH
Confidence 34566666677999999999999999998885
No 362
>3w01_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; HET: PGE; 1.54A {Staphylococcus aureus} PDB: 3w02_A
Probab=69.80 E-value=8.3 Score=30.07 Aligned_cols=60 Identities=13% Similarity=0.145 Sum_probs=42.4
Q ss_pred HHHHHHHHhCCCCceEEEEccCCC--CCCHHHHHHHHhcCCCCcEEEEeccCCHHHHHHHHhCCcceEEeC
Q 027234 12 EIALDMLRTNKNGYDIVISDVHMP--DMDGFKLLELVGLEMDLPVIMMCAHGSKEVVMKGVTHDACDYLTK 80 (226)
Q Consensus 12 ~eal~~l~~~~~~~DlVl~D~~mp--~~dG~~l~~~l~~~~~~pvI~ls~~~~~~~~~~a~~~ga~~yl~K 80 (226)
.++++.+.+. +.|+|++-.... ..+-+++++.++. .++|+|++.... ..+..|+|+|+.-
T Consensus 26 ~~~l~~~~~~--GtDaI~vGgs~gvt~~~~~~~v~~ik~-~~~Piil~p~~~------~~~~~gaD~il~p 87 (235)
T 3w01_A 26 DDDLDAICMS--QTDAIMIGGTDDVTEDNVIHLMSKIRR-YPLPLVLEISNI------ESVMPGFDFYFVP 87 (235)
T ss_dssp HHHHHHHHTS--SCSEEEECCSSCCCHHHHHHHHHHHTT-SCSCEEEECCCS------TTCCTTCSEEEEE
T ss_pred HHHHHHHHHc--CCCEEEECCcCCcCHHHHHHHHHHhcC-cCCCEEEecCCH------HHhhcCCCEEEEc
Confidence 3456555553 389999887542 2346777888887 889999988753 3456799999865
No 363
>3paj_A Nicotinate-nucleotide pyrophosphorylase, carboxyl; TIM barrel, pyridin dicarboxylate, 5-phospho-alpha-D-ribose 1-diphosphate; 2.00A {Vibrio cholerae o1 biovar el tor}
Probab=69.76 E-value=33 Score=27.94 Aligned_cols=66 Identities=9% Similarity=0.000 Sum_probs=46.2
Q ss_pred EEEECCHHHHHHHHHhCCCCceEEEEccCCCCCCHHHHHHHHhc-CCCCcEEEEeccCCHHHHHHHHhCCcceEE
Q 027234 5 VTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVGL-EMDLPVIMMCAHGSKEVVMKGVTHDACDYL 78 (226)
Q Consensus 5 V~~~~~~~eal~~l~~~~~~~DlVl~D~~mp~~dG~~l~~~l~~-~~~~pvI~ls~~~~~~~~~~a~~~ga~~yl 78 (226)
...+.+.+++.+.+.. ++|+|.+|- |+--++-+.++. ... ..|..|+.-+.+.+......|+|.+-
T Consensus 235 eVEVdtldea~eAl~a---GaD~I~LDn----~~~~~l~~av~~l~~~-v~ieaSGGIt~~~I~~~a~tGVD~is 301 (320)
T 3paj_A 235 EVETETLAELEEAISA---GADIIMLDN----FSLEMMREAVKINAGR-AALENSGNITLDNLKECAETGVDYIS 301 (320)
T ss_dssp EEEESSHHHHHHHHHT---TCSEEEEES----CCHHHHHHHHHHHTTS-SEEEEESSCCHHHHHHHHTTTCSEEE
T ss_pred EEEECCHHHHHHHHHc---CCCEEEECC----CCHHHHHHHHHHhCCC-CeEEEECCCCHHHHHHHHHcCCCEEE
Confidence 3578899999888874 389999995 343333333332 233 45668888999999999999997654
No 364
>1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1
Probab=69.65 E-value=17 Score=30.44 Aligned_cols=70 Identities=16% Similarity=0.085 Sum_probs=46.9
Q ss_pred EECCHHHHHHHHHhCCCCceEEEEccCC-----------CCCCHHHHHHHHh---cCCCCcEEEEeccCCHHHHHHHHhC
Q 027234 7 KCNRAEIALDMLRTNKNGYDIVISDVHM-----------PDMDGFKLLELVG---LEMDLPVIMMCAHGSKEVVMKGVTH 72 (226)
Q Consensus 7 ~~~~~~eal~~l~~~~~~~DlVl~D~~m-----------p~~dG~~l~~~l~---~~~~~pvI~ls~~~~~~~~~~a~~~ 72 (226)
.+.+.++|....+ .++|.|.+-..- .+...++.+..+. ...++|||...+-.+.+.+.+++.+
T Consensus 201 ~v~~~~~a~~a~~---~Gad~I~vg~~~G~~~~~~~~~~~g~p~~~~l~~v~~~~~~~~ipVia~GGI~~~~d~~~ala~ 277 (404)
T 1eep_A 201 NIVTKEAALDLIS---VGADCLKVGIGPGSICTTRIVAGVGVPQITAICDVYEACNNTNICIIADGGIRFSGDVVKAIAA 277 (404)
T ss_dssp EECSHHHHHHHHT---TTCSEEEECSSCSTTSHHHHHHCCCCCHHHHHHHHHHHHTTSSCEEEEESCCCSHHHHHHHHHH
T ss_pred CCCcHHHHHHHHh---cCCCEEEECCCCCcCcCccccCCCCcchHHHHHHHHHHHhhcCceEEEECCCCCHHHHHHHHHc
Confidence 4667777766554 338988882210 0122345555443 2457999988888889999999999
Q ss_pred CcceEEe
Q 027234 73 DACDYLT 79 (226)
Q Consensus 73 ga~~yl~ 79 (226)
||+....
T Consensus 278 GAd~V~i 284 (404)
T 1eep_A 278 GADSVMI 284 (404)
T ss_dssp TCSEEEE
T ss_pred CCCHHhh
Confidence 9998775
No 365
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=69.60 E-value=3.2 Score=25.13 Aligned_cols=21 Identities=19% Similarity=0.177 Sum_probs=17.3
Q ss_pred CCCCCHHHHHHHhhhhhhhhh
Q 027234 187 IPGLTRENVASHLQKHRLYLS 207 (226)
Q Consensus 187 ~~~lt~~~va~~l~~~r~~l~ 207 (226)
..++|..+||..|++|+...+
T Consensus 23 ~~g~s~~eIA~~lgis~~tV~ 43 (68)
T 2p7v_B 23 NTDYTLEEVGKQFDVTRERIR 43 (68)
T ss_dssp SSCCCHHHHHHHHTCCHHHHH
T ss_pred CCCCCHHHHHHHHCcCHHHHH
Confidence 468999999999999888544
No 366
>2np3_A Putative TETR-family regulator; transcriptional regulator, structural genomics, PSI-2, structure initiative; HET: MSE; 2.35A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=69.38 E-value=1.2 Score=33.17 Aligned_cols=42 Identities=7% Similarity=0.131 Sum_probs=7.2
Q ss_pred HHHHHHHHHHhCCCCCCchHHHHhhCCCCCCHHHHHHHhhhhhhhhhcccCC
Q 027234 161 HQQFVSAVKELGFDKAGPKKILELMNIPGLTRENVASHLQKHRLYLSRLSGV 212 (226)
Q Consensus 161 ~~~Fi~~~~~~g~~~~~p~~I~~~~~~~~lt~~~va~~l~~~r~~l~r~~~~ 212 (226)
.+.++.++.+ ++..-.-.++|+++||.+.++||..||+-|+.
T Consensus 32 r~~Il~aa~~----------l~~~~G~~~~ti~~IA~~agvs~~t~Y~~F~s 73 (212)
T 2np3_A 32 REAILTAARV----------CFAERGFDATSLRRIAETAGVDQSLVHHFYGT 73 (212)
T ss_dssp ---CHHHHHH----------HC---------------------------CCC
T ss_pred HHHHHHHHHH----------HHHHcCcccccHHHHHHHcCCCHHHHHHHhCC
Confidence 3456666666 33334455789999999999999999998875
No 367
>3kxa_A NGO0477 protein, putative uncharacterized protein; NEW protein fold, OPPF, STRU genomics, oxford protein production facility; 2.80A {Neisseria gonorrhoeae}
Probab=68.97 E-value=1 Score=32.16 Aligned_cols=32 Identities=25% Similarity=0.366 Sum_probs=26.4
Q ss_pred HHHHhhCCCCCCHHHHHHHhhhhhhhhhcccC
Q 027234 180 KILELMNIPGLTRENVASHLQKHRLYLSRLSG 211 (226)
Q Consensus 180 ~I~~~~~~~~lt~~~va~~l~~~r~~l~r~~~ 211 (226)
.|.+....-++|..++|..+++|+++++|+-+
T Consensus 72 ~L~~~R~~~glTq~elA~~lGis~s~is~~E~ 103 (141)
T 3kxa_A 72 TFVSLRMKKGFTQSELATAAGLPQPYLSRIEN 103 (141)
T ss_dssp CHHHHHHHTTCCHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 35556666799999999999999999998743
No 368
>1b0n_A Protein (SINR protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1 a.35.1.3 PDB: 2yal_A
Probab=68.80 E-value=1.6 Score=29.22 Aligned_cols=31 Identities=19% Similarity=0.250 Sum_probs=22.8
Q ss_pred HHHhhCCCCCCHHHHHHHhhhhhhhhhcccC
Q 027234 181 ILELMNIPGLTRENVASHLQKHRLYLSRLSG 211 (226)
Q Consensus 181 I~~~~~~~~lt~~~va~~l~~~r~~l~r~~~ 211 (226)
|...+..-++|..++|..+++++++++++-.
T Consensus 6 l~~~r~~~gltq~~lA~~~gis~~~i~~~e~ 36 (111)
T 1b0n_A 6 IKQYRKEKGYSLSELAEKAGVAKSYLSSIER 36 (111)
T ss_dssp HHHHHHHTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HHHHHHHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 4444445588888888888888888887643
No 369
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=68.71 E-value=16 Score=27.82 Aligned_cols=74 Identities=18% Similarity=0.118 Sum_probs=47.6
Q ss_pred CcEEEEE---CCHHHHHHHHHhCCCCceEEEE--ccCCCC-CCH-HHHHHHHhcC-C--CCcEEEEeccCCHHHHHHHHh
Q 027234 2 GFSVTKC---NRAEIALDMLRTNKNGYDIVIS--DVHMPD-MDG-FKLLELVGLE-M--DLPVIMMCAHGSKEVVMKGVT 71 (226)
Q Consensus 2 g~~V~~~---~~~~eal~~l~~~~~~~DlVl~--D~~mp~-~dG-~~l~~~l~~~-~--~~pvI~ls~~~~~~~~~~a~~ 71 (226)
||+|... -..++.++.+.+.. ||+|.+ ...|.. +.. -++++.++.. . ++||++=-.....+. +-.
T Consensus 120 G~~Vi~LG~~vp~e~iv~~~~~~~--~d~v~l~~S~l~~~~~~~~~~~i~~l~~~~~~~~v~v~vGG~~~~~~~---a~~ 194 (215)
T 3ezx_A 120 GFQIVDLGVDVLNENVVEEAAKHK--GEKVLLVGSALMTTSMLGQKDLMDRLNEEKLRDSVKCMFGGAPVSDKW---IEE 194 (215)
T ss_dssp SCEEEECCSSCCHHHHHHHHHHTT--TSCEEEEEECSSHHHHTHHHHHHHHHHHTTCGGGSEEEEESSSCCHHH---HHH
T ss_pred CCeEEEcCCCCCHHHHHHHHHHcC--CCEEEEEchhcccCcHHHHHHHHHHHHHcCCCCCCEEEEECCCCCHHH---HHH
Confidence 7887643 36778888998877 999999 877743 332 3355666533 3 577765544445443 345
Q ss_pred CCcceEEeC
Q 027234 72 HDACDYLTK 80 (226)
Q Consensus 72 ~ga~~yl~K 80 (226)
.||+.|-.-
T Consensus 195 iGad~~~~d 203 (215)
T 3ezx_A 195 IGADATAEN 203 (215)
T ss_dssp HTCCBCCSS
T ss_pred hCCeEEECC
Confidence 699988643
No 370
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=68.61 E-value=9.8 Score=28.74 Aligned_cols=47 Identities=9% Similarity=0.103 Sum_probs=32.2
Q ss_pred CCceEEEEccCC-----CCCCHHHHHHHHhcCCCCcEEEEeccCCHHHHHHH
Q 027234 23 NGYDIVISDVHM-----PDMDGFKLLELVGLEMDLPVIMMCAHGSKEVVMKG 69 (226)
Q Consensus 23 ~~~DlVl~D~~m-----p~~dG~~l~~~l~~~~~~pvI~ls~~~~~~~~~~a 69 (226)
..+|+||+|-.. .-.+--++++.|...+.---+++|+...+....+.
T Consensus 119 ~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap~~l~e~ 170 (196)
T 1g5t_A 119 PLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCHRDILDL 170 (196)
T ss_dssp TTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCCHHHHHH
T ss_pred CCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCcHHHHHh
Confidence 349999999643 22455667788876676556678887777666544
No 371
>1r71_A Transcriptional repressor protein KORB; INCP, plasmid partitioning, protein-DNA complex, heilx-turn- helix motif, transcription factor; HET: BRU; 2.20A {Escherichia coli} SCOP: a.4.14.1
Probab=68.59 E-value=1.9 Score=32.17 Aligned_cols=27 Identities=11% Similarity=0.270 Sum_probs=22.5
Q ss_pred CCCHHHHHHHhhhhhhhhhcccCCCCC
Q 027234 189 GLTRENVASHLQKHRLYLSRLSGVSPQ 215 (226)
Q Consensus 189 ~lt~~~va~~l~~~r~~l~r~~~~~~~ 215 (226)
++|.++||..+|+||+++++.....+.
T Consensus 52 G~t~eeiA~~lG~s~s~V~~~LrLl~L 78 (178)
T 1r71_A 52 GKKKGDIAKEIGKSPAFITQHVTLLDL 78 (178)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHGGGSC
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHcC
Confidence 899999999999999998875555443
No 372
>2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A*
Probab=68.54 E-value=34 Score=27.66 Aligned_cols=62 Identities=10% Similarity=-0.020 Sum_probs=44.9
Q ss_pred CHHHHHHHHHhCCCCceEEEEccCCCCCCHHHHHHHHhcCCCCcEEEEeccCCHHHHHHHHhCCcceEEeC
Q 027234 10 RAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVGLEMDLPVIMMCAHGSKEVVMKGVTHDACDYLTK 80 (226)
Q Consensus 10 ~~~eal~~l~~~~~~~DlVl~D~~mp~~dG~~l~~~l~~~~~~pvI~ls~~~~~~~~~~a~~~ga~~yl~K 80 (226)
+..+.++.+.+.. +|+|.+....| .++++.++.. .++++... ...+....+...|++.++.-
T Consensus 84 ~~~~~~~~~~~~g--~d~V~~~~g~p----~~~~~~l~~~-gi~vi~~v--~t~~~a~~~~~~GaD~i~v~ 145 (328)
T 2gjl_A 84 PYAEYRAAIIEAG--IRVVETAGNDP----GEHIAEFRRH-GVKVIHKC--TAVRHALKAERLGVDAVSID 145 (328)
T ss_dssp CHHHHHHHHHHTT--CCEEEEEESCC----HHHHHHHHHT-TCEEEEEE--SSHHHHHHHHHTTCSEEEEE
T ss_pred cHHHHHHHHHhcC--CCEEEEcCCCc----HHHHHHHHHc-CCCEEeeC--CCHHHHHHHHHcCCCEEEEE
Confidence 4467777777755 99999887766 5777777653 67776432 45677788899999988873
No 373
>3npi_A TETR family regulatory protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 2.96A {Corynebacterium diphtheriae}
Probab=68.37 E-value=1.4 Score=34.04 Aligned_cols=43 Identities=12% Similarity=0.088 Sum_probs=33.3
Q ss_pred hHHHHHHHHHHhCCCCCCchHHHHhhCCCCCCHHHHHHHhhhhhhhhhcccCC
Q 027234 160 LHQQFVSAVKELGFDKAGPKKILELMNIPGLTRENVASHLQKHRLYLSRLSGV 212 (226)
Q Consensus 160 l~~~Fi~~~~~~g~~~~~p~~I~~~~~~~~lt~~~va~~l~~~r~~l~r~~~~ 212 (226)
-.++++.++.++ +.+ -.-.+.|+++||.+.|+|+..+|+-|+.
T Consensus 19 ~r~~Il~AA~~l---------f~~-~G~~~~t~~~IA~~aGvs~~tlY~~F~s 61 (251)
T 3npi_A 19 STDTVLDIALSL---------FSE-LGFSDAKLEAIAKKSGMSKRMIHYHFGD 61 (251)
T ss_dssp CHHHHHHHHHHH---------HHH-HHHHHCCHHHHHHHHCCCHHHHHHHHCS
T ss_pred HHHHHHHHHHHH---------HHH-cCccccCHHHHHHHHCCCHHHHHHHcCC
Confidence 356788888772 333 3445789999999999999999998864
No 374
>3fym_A Putative uncharacterized protein; HTH DNA binding, DNA binding protein; 1.00A {Staphylococcus aureus subsp}
Probab=68.31 E-value=1.5 Score=30.79 Aligned_cols=28 Identities=14% Similarity=0.083 Sum_probs=19.6
Q ss_pred HHhhCCCCCCHHHHHHHhhhhhhhhhcc
Q 027234 182 LELMNIPGLTRENVASHLQKHRLYLSRL 209 (226)
Q Consensus 182 ~~~~~~~~lt~~~va~~l~~~r~~l~r~ 209 (226)
.+....-++|++++|..+++|+++++++
T Consensus 9 r~~R~~~gltq~elA~~~gis~~~is~i 36 (130)
T 3fym_A 9 KGRRERLGMTLTELEQRTGIKREMLVHI 36 (130)
T ss_dssp HHHHHHTTCCHHHHHHHHCCCHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHCcCHHHHHHH
Confidence 3333345788888888888888887775
No 375
>2fbq_A Probable transcriptional regulator; PA3006, APC5893, structural genom protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.1.9 a.121.1.1
Probab=68.27 E-value=5.1 Score=30.38 Aligned_cols=42 Identities=7% Similarity=0.056 Sum_probs=33.3
Q ss_pred HHHHHHHHHHhCCCCCCchHHHHhhCCCCCCHHHHHHHhhhhhhhhhcccCC
Q 027234 161 HQQFVSAVKELGFDKAGPKKILELMNIPGLTRENVASHLQKHRLYLSRLSGV 212 (226)
Q Consensus 161 ~~~Fi~~~~~~g~~~~~p~~I~~~~~~~~lt~~~va~~l~~~r~~l~r~~~~ 212 (226)
.++++.++.+ +...-.-.+.|+++||.+.|+++..+|+-|+.
T Consensus 9 r~~Il~AA~~----------lF~e~G~~~ts~~~IA~~AGvs~~tlY~hF~s 50 (235)
T 2fbq_A 9 VERILDAAEQ----------LFAEKGFAETSLRLITSKAGVNLAAVNYHFGS 50 (235)
T ss_dssp HHHHHHHHHH----------HHHHHCSTTCCHHHHHHHHTSCHHHHHHHTCS
T ss_pred HHHHHHHHHH----------HHHHcCccccCHHHHHHHhCCCHHHHHHHcCC
Confidence 4677888877 33344566899999999999999999998764
No 376
>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0
Probab=68.02 E-value=6.3 Score=29.61 Aligned_cols=83 Identities=12% Similarity=0.006 Sum_probs=51.3
Q ss_pred CCHHHHHHHHHhCCCCceEEEEccCCCC--CCHHHHHHHHhcC-CCCcEEE--EeccCCHHHHHHHHhCCcceEEeCCCC
Q 027234 9 NRAEIALDMLRTNKNGYDIVISDVHMPD--MDGFKLLELVGLE-MDLPVIM--MCAHGSKEVVMKGVTHDACDYLTKPVR 83 (226)
Q Consensus 9 ~~~~eal~~l~~~~~~~DlVl~D~~mp~--~dG~~l~~~l~~~-~~~pvI~--ls~~~~~~~~~~a~~~ga~~yl~KP~~ 83 (226)
.+.+++++.++.....+|+|- +.+|. ..|+++++.+++. ++.|+.+ +...........+...||+..+.-...
T Consensus 10 ~~~~~~~~~~~~~~~~~diie--~G~p~~~~~g~~~i~~ir~~~~~~~i~~~~~~~~~~~~~~~~~~~~Gad~v~v~~~~ 87 (211)
T 3f4w_A 10 LTLPEAMVFMDKVVDDVDIIE--VGTPFLIREGVNAIKAIKEKYPHKEVLADAKIMDGGHFESQLLFDAGADYVTVLGVT 87 (211)
T ss_dssp CCHHHHHHHHHHHGGGCSEEE--ECHHHHHHHTTHHHHHHHHHCTTSEEEEEEEECSCHHHHHHHHHHTTCSEEEEETTS
T ss_pred CCHHHHHHHHHHhhcCccEEE--eCcHHHHhccHHHHHHHHHhCCCCEEEEEEEeccchHHHHHHHHhcCCCEEEEeCCC
Confidence 467888888876422356543 33353 4678889999855 6788754 223222333888999999998875444
Q ss_pred H-HHHHHHHHH
Q 027234 84 I-EELKNIWQH 93 (226)
Q Consensus 84 ~-~~L~~~l~~ 93 (226)
. +.+...++.
T Consensus 88 ~~~~~~~~~~~ 98 (211)
T 3f4w_A 88 DVLTIQSCIRA 98 (211)
T ss_dssp CHHHHHHHHHH
T ss_pred ChhHHHHHHHH
Confidence 3 344444433
No 377
>1dxe_A 2-dehydro-3-deoxy-galactarate aldolase; class II aldolase; 1.8A {Escherichia coli} SCOP: c.1.12.5 PDB: 1dxf_A
Probab=68.01 E-value=41 Score=26.20 Aligned_cols=82 Identities=10% Similarity=0.043 Sum_probs=54.7
Q ss_pred CHHHHHHHHHhCCCCceEEEEccCCCCCCHHHHHHHHh--cCCCCcEEEEeccCCHHHHHHHHhCCcceEE-eCCCCHHH
Q 027234 10 RAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVG--LEMDLPVIMMCAHGSKEVVMKGVTHDACDYL-TKPVRIEE 86 (226)
Q Consensus 10 ~~~eal~~l~~~~~~~DlVl~D~~mp~~dG~~l~~~l~--~~~~~pvI~ls~~~~~~~~~~a~~~ga~~yl-~KP~~~~~ 86 (226)
+..+.++.+.... +|.|++|+.-...+--++...++ .....++++=+...+...+..++..|+++.+ +|--+.++
T Consensus 28 ~~p~~~e~a~~~g--aD~v~lDlEd~p~~~~~a~~~~~~~~~~~~~~~VRv~~~~~~~i~~~l~~g~~gI~~P~V~s~~e 105 (256)
T 1dxe_A 28 SNPISTEVLGLAG--FDWLVLDGEHAPNDISTFIPQLMALKGSASAPVVRVPTNEPVIIKRLLDIGFYNFLIPFVETKEE 105 (256)
T ss_dssp CSHHHHHHHTTSC--CSEEEEESSSSSCCHHHHHHHHHHTTTCSSEEEEECSSSCHHHHHHHHHTTCCEEEESCCCSHHH
T ss_pred CCHHHHHHHHhCC--CCEEEEcCCCCCCCHHHHHHHHHHHHhCCCcEEEECCCCCHHHHHHHHhcCCceeeecCcCCHHH
Confidence 3445566666544 99999999765333333333333 2345677777777788888999999998844 66667888
Q ss_pred HHHHHHH
Q 027234 87 LKNIWQH 93 (226)
Q Consensus 87 L~~~l~~ 93 (226)
+...++.
T Consensus 106 v~~~~~~ 112 (256)
T 1dxe_A 106 AELAVAS 112 (256)
T ss_dssp HHHHHHT
T ss_pred HHHHHHH
Confidence 8665544
No 378
>3uj3_X DNA-invertase; helix-turn-helix, site-specific recombinase, recombination; 3.51A {Enterobacteria phage MU} PDB: 3plo_X
Probab=67.62 E-value=1.1 Score=33.64 Aligned_cols=35 Identities=17% Similarity=0.108 Sum_probs=0.0
Q ss_pred HHHHhhCCCCCCHHHHHHHhhhhhhhhhcccCCCCC
Q 027234 180 KILELMNIPGLTRENVASHLQKHRLYLSRLSGVSPQ 215 (226)
Q Consensus 180 ~I~~~~~~~~lt~~~va~~l~~~r~~l~r~~~~~~~ 215 (226)
.|.+.+.. |.+..+||..|++||+.+||..+....
T Consensus 150 ~i~~l~~~-G~s~~~Ia~~l~vs~~Tvyr~l~~~~~ 184 (193)
T 3uj3_X 150 QAGRLLAQ-GIPRKQVALIYDVALSTLYKKHPAKRA 184 (193)
T ss_dssp ------------------------------------
T ss_pred HHHHHHHc-CCCHHHHHHHHCcCHHHHHHHHHHhhh
Confidence 36665554 899999999999999999997665544
No 379
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=67.52 E-value=2.7 Score=25.31 Aligned_cols=28 Identities=18% Similarity=0.083 Sum_probs=20.2
Q ss_pred HHHhhCCCCCCHHHHHHHhhhhhhhhhc
Q 027234 181 ILELMNIPGLTRENVASHLQKHRLYLSR 208 (226)
Q Consensus 181 I~~~~~~~~lt~~~va~~l~~~r~~l~r 208 (226)
|+...-..+++..+||..|++|+...++
T Consensus 23 il~l~~~~g~s~~eIA~~lgis~~tv~~ 50 (70)
T 2o8x_A 23 ALLLTQLLGLSYADAAAVCGCPVGTIRS 50 (70)
T ss_dssp HHHHHHTSCCCHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHCcCHHHHHH
Confidence 4444335589999999999998886553
No 380
>2ict_A Antitoxin HIGA; helix-turn-helix, structural genomics, PSI-2, protein struct initiative, northeast structural genomics consortium, NESG; 1.63A {Escherichia coli} SCOP: a.35.1.3 PDB: 2icp_A
Probab=67.29 E-value=1.3 Score=28.83 Aligned_cols=31 Identities=19% Similarity=0.125 Sum_probs=23.5
Q ss_pred HHHhhCCCCCCHHHHHHHhhhhhhhhhcccC
Q 027234 181 ILELMNIPGLTRENVASHLQKHRLYLSRLSG 211 (226)
Q Consensus 181 I~~~~~~~~lt~~~va~~l~~~r~~l~r~~~ 211 (226)
|.+.+...++|..++|..+++++++++++.+
T Consensus 13 l~~~r~~~gltq~~lA~~~gis~~~is~~e~ 43 (94)
T 2ict_A 13 IQESLDELNVSLREFARAMEIAPSTASRLLT 43 (94)
T ss_dssp HHHHHHHHTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHhCCCHHHHHHHHc
Confidence 3334444589999999999999999888643
No 381
>2ppx_A AGR_C_3184P, uncharacterized protein ATU1735; HTH-motif, XRE-family, structural genomics, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: a.35.1.3
Probab=67.20 E-value=1.5 Score=28.89 Aligned_cols=30 Identities=17% Similarity=0.078 Sum_probs=23.8
Q ss_pred HHHHhhCCCCCCHHHHHHHhhhhhhhhhcc
Q 027234 180 KILELMNIPGLTRENVASHLQKHRLYLSRL 209 (226)
Q Consensus 180 ~I~~~~~~~~lt~~~va~~l~~~r~~l~r~ 209 (226)
.|.+....-++|.+++|..+++++++++++
T Consensus 34 ~lk~~R~~~glsq~elA~~lgvs~~~is~~ 63 (99)
T 2ppx_A 34 RIKIIRRALKLTQEEFSARYHIPLGTLRDW 63 (99)
T ss_dssp HHHHHHHHTTCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHhCcCHHHHHHH
Confidence 345555556899999999999999998876
No 382
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=67.13 E-value=2.4 Score=34.24 Aligned_cols=31 Identities=23% Similarity=0.162 Sum_probs=26.4
Q ss_pred HHHHhhCCCCCCHHHHHHHhhhhhhhhhccc
Q 027234 180 KILELMNIPGLTRENVASHLQKHRLYLSRLS 210 (226)
Q Consensus 180 ~I~~~~~~~~lt~~~va~~l~~~r~~l~r~~ 210 (226)
.|.+.+...+-++...|..||+||+.|||.-
T Consensus 272 ~i~~~l~~~~gn~~~aA~~Lgi~r~tl~~kl 302 (304)
T 1ojl_A 272 VILAALEKTGGNKTEAARQLGITRKTLLAKL 302 (304)
T ss_dssp HHHHHHHTTTTCHHHHHHHHTSCHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHCcCHHHHHHHH
Confidence 5666777778899999999999999999854
No 383
>1j9i_A GPNU1 DBD;, terminase small subunit; DNA binding domain, homodimer, viral assembly, winged helix-turn-helix, viral protein; NMR {Enterobacteria phage lambda} SCOP: a.6.1.5
Probab=67.13 E-value=1.3 Score=27.15 Aligned_cols=23 Identities=4% Similarity=0.057 Sum_probs=19.6
Q ss_pred CCHHHHHHHhhhhhhhhhcccCC
Q 027234 190 LTRENVASHLQKHRLYLSRLSGV 212 (226)
Q Consensus 190 lt~~~va~~l~~~r~~l~r~~~~ 212 (226)
+|..++|..|++|+..+||.-+.
T Consensus 3 lt~~e~a~~LgvS~~Tl~rw~~~ 25 (68)
T 1j9i_A 3 VNKKQLADIFGASIRTIQNWQEQ 25 (68)
T ss_dssp EEHHHHHHHTTCCHHHHHHHTTT
T ss_pred cCHHHHHHHHCcCHHHHHHHHHC
Confidence 68899999999999999985443
No 384
>3or1_C Sulfite reductase GAMA; dissimilatory sulfite reductase, sulfate reduction, oxidored sulfite reduction; HET: SRM; 1.76A {Desulfovibrio gigas} SCOP: d.203.1.1 PDB: 3or2_C* 2v4j_C* 2xsj_C*
Probab=67.00 E-value=8.9 Score=25.88 Aligned_cols=46 Identities=9% Similarity=-0.070 Sum_probs=35.2
Q ss_pred HhhHHHHHHHHHHhCCCCCCchHHHHhhCCCCCCHHHHHHHhhhhhhhhhcccCCCC
Q 027234 158 VELHQQFVSAVKELGFDKAGPKKILELMNIPGLTRENVASHLQKHRLYLSRLSGVSP 214 (226)
Q Consensus 158 ~~l~~~Fi~~~~~~g~~~~~p~~I~~~~~~~~lt~~~va~~l~~~r~~l~r~~~~~~ 214 (226)
++.|.+.|..+.. ...++=.. -++..++..+++++.|||++|...+
T Consensus 43 Te~HW~vI~flR~---------yY~e~~~~--P~iR~l~K~~~~~~k~Ly~LFP~gP 88 (105)
T 3or1_C 43 SADHQKIIDFLQD---------YYKANGIA--PMVRILSKNTGFALKEIYELFPSGP 88 (105)
T ss_dssp CHHHHHHHHHHHH---------HHHHHSSC--CCHHHHHHHHCCCHHHHHHHCTTCT
T ss_pred CHHHHHHHHHHHH---------HHHHHCCC--CcHHHHHHHHCcCHHHHHHHCCCCH
Confidence 5778888888877 45554333 3788999999999999999997543
No 385
>3op9_A PLI0006 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, transcription regulat; HET: MSE; 1.90A {Listeria innocua}
Probab=66.97 E-value=1.3 Score=29.93 Aligned_cols=30 Identities=17% Similarity=0.206 Sum_probs=22.6
Q ss_pred HHHHhhCCCCCCHHHHHHHhhhhhhhhhcc
Q 027234 180 KILELMNIPGLTRENVASHLQKHRLYLSRL 209 (226)
Q Consensus 180 ~I~~~~~~~~lt~~~va~~l~~~r~~l~r~ 209 (226)
.|.+.+..-++|..++|..+++|+++++++
T Consensus 13 ~l~~~r~~~glsq~~lA~~~gis~~~i~~~ 42 (114)
T 3op9_A 13 NLSRLKKEHGLKNHQIAELLNVQTRTVAYY 42 (114)
T ss_dssp HHHHHHHHHTCCHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHCcCHHHHHHH
Confidence 344444555888999999999998888875
No 386
>2o38_A Hypothetical protein; alpha-beta, helix-turn-helix, structural genomics, PSI-2, PR structure initiative; 1.83A {Rhodopseudomonas palustris} SCOP: a.35.1.13
Probab=66.88 E-value=1.8 Score=29.97 Aligned_cols=32 Identities=16% Similarity=0.215 Sum_probs=25.9
Q ss_pred HHHHhhCCCCCCHHHHHHHhhhhhhhhhcccC
Q 027234 180 KILELMNIPGLTRENVASHLQKHRLYLSRLSG 211 (226)
Q Consensus 180 ~I~~~~~~~~lt~~~va~~l~~~r~~l~r~~~ 211 (226)
.|.+.+..-++|.+++|..+++++.+++++-.
T Consensus 44 ~L~~~R~~~glTQ~eLA~~lGis~~~Is~iE~ 75 (120)
T 2o38_A 44 ALNAVIDRARLSQAAAAARLGINQPKVSALRN 75 (120)
T ss_dssp HHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 35555556699999999999999999998643
No 387
>2l49_A C protein; P2 bacteriophage, P2 C, direct repeats, DNA-binding protein, binding protein; NMR {Enterobacteria phage P2} PDB: 2xcj_A
Probab=66.84 E-value=1.7 Score=28.43 Aligned_cols=31 Identities=23% Similarity=0.095 Sum_probs=23.7
Q ss_pred HHHHhhCCCCCCHHHHHHHhhhhhhhhhccc
Q 027234 180 KILELMNIPGLTRENVASHLQKHRLYLSRLS 210 (226)
Q Consensus 180 ~I~~~~~~~~lt~~~va~~l~~~r~~l~r~~ 210 (226)
.|.+.+..-++|..++|..+++++++++++-
T Consensus 8 ~l~~~r~~~gltq~~lA~~~gis~~~is~~e 38 (99)
T 2l49_A 8 KIVLMRKSEYLSRQQLADLTGVPYGTLSYYE 38 (99)
T ss_dssp HHHHHHHHTTCCHHHHHHHHCCCHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHCcCHHHHHHHH
Confidence 3555555668999999999999998887753
No 388
>3vk5_A MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {Streptomyces ghanaensis} PDB: 3vka_A* 3vkb_A* 3vkc_A* 3vkd_A*
Probab=66.75 E-value=13 Score=29.79 Aligned_cols=56 Identities=9% Similarity=-0.081 Sum_probs=45.3
Q ss_pred ceEEEEccCCCCCCHHHHHHHHhcCC--CCcEEEEeccCCHHHHHHHHhCCcceEEeCC
Q 027234 25 YDIVISDVHMPDMDGFKLLELVGLEM--DLPVIMMCAHGSKEVVMKGVTHDACDYLTKP 81 (226)
Q Consensus 25 ~DlVl~D~~mp~~dG~~l~~~l~~~~--~~pvI~ls~~~~~~~~~~a~~~ga~~yl~KP 81 (226)
.++|.+|..- .....++++.+++.. .+|+++=-+-.+.+.+.+++..||+..+.--
T Consensus 200 ~~lV~LD~~~-~~v~~e~V~~I~~~~~~~iPV~vGGGIrs~Eda~~ll~aGAD~VVVGS 257 (286)
T 3vk5_A 200 FHMVYLYSRN-EHVPPEVVRHFRKGLGPDQVLFVSGNVRSGRQVTEYLDSGADYVGFAG 257 (286)
T ss_dssp CSEEEEECSS-SCCCHHHHHHHHHHSCTTCEEEEESSCCSHHHHHHHHHTTCSEEEESG
T ss_pred CCEEEEcCCC-CcCCHHHHHHHHHhcCCCCCEEEEeCCCCHHHHHHHHHcCCCEEEECc
Confidence 6899999754 334468888887655 7999988888899999999999999988653
No 389
>3gnn_A Nicotinate-nucleotide pyrophosphorylase; decode biostructures, ssgcid, niaid, SBRI, UWPPG, glycosyltransferase, transferase, structural genomics; 2.25A {Burkholderia pseudomallei}
Probab=66.64 E-value=24 Score=28.49 Aligned_cols=65 Identities=11% Similarity=-0.013 Sum_probs=44.9
Q ss_pred EEECCHHHHHHHHHhCCCCceEEEEccCCCCCCHHHHHHHHhcCCCCcEEEEeccCCHHHHHHHHhCCcceE
Q 027234 6 TKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVGLEMDLPVIMMCAHGSKEVVMKGVTHDACDY 77 (226)
Q Consensus 6 ~~~~~~~eal~~l~~~~~~~DlVl~D~~mp~~dG~~l~~~l~~~~~~pvI~ls~~~~~~~~~~a~~~ga~~y 77 (226)
..+.+.+++.+.+.. ++|+|.+|- |+--++-+.++....-..|..|+.-+.+.+......|+|.+
T Consensus 214 VEvdtlde~~eAl~a---GaD~I~LDn----~~~~~l~~av~~i~~~v~ieaSGGI~~~~i~~~a~tGVD~i 278 (298)
T 3gnn_A 214 IEVETLDQLRTALAH---GARSVLLDN----FTLDMMRDAVRVTEGRAVLEVSGGVNFDTVRAIAETGVDRI 278 (298)
T ss_dssp EEESSHHHHHHHHHT---TCEEEEEES----CCHHHHHHHHHHHTTSEEEEEESSCSTTTHHHHHHTTCSEE
T ss_pred EEeCCHHHHHHHHHc---CCCEEEECC----CCHHHHHHHHHHhCCCCeEEEEcCCCHHHHHHHHHcCCCEE
Confidence 468889998888874 389999995 44444433443222223466888888888888889999655
No 390
>1qv9_A F420-dependent methylenetetrahydromethanopterin dehydrogenase; monomer: alpha/beta domain, helix bundle, trimer of dimers, oxidoreductase; HET: MSE; 1.54A {Methanopyrus kandleri} SCOP: c.127.1.1 PDB: 1u6i_A 1u6j_A 1u6k_A* 3iqe_A* 3iqf_A* 3iqz_A*
Probab=66.47 E-value=8.5 Score=30.06 Aligned_cols=60 Identities=10% Similarity=0.131 Sum_probs=45.1
Q ss_pred HhCCCCceEEEEccCCCCCCHHHHHHHHhcCCCCcEEEEeccCCHHHHHHHHhCCcceEEeCC
Q 027234 19 RTNKNGYDIVISDVHMPDMDGFKLLELVGLEMDLPVIMMCAHGSKEVVMKGVTHDACDYLTKP 81 (226)
Q Consensus 19 ~~~~~~~DlVl~D~~mp~~dG~~l~~~l~~~~~~pvI~ls~~~~~~~~~~a~~~ga~~yl~KP 81 (226)
.+.. ||+||.=-=.|..-|-.-.|.+-...++|.|++|...... ..++++..-.|||.-+
T Consensus 61 ~~~~--pDfvI~isPN~a~PGP~~ARE~l~~~~iP~IvI~D~p~~K-~kd~l~~~g~GYIivk 120 (283)
T 1qv9_A 61 EDFE--PDFIVYGGPNPAAPGPSKAREMLADSEYPAVIIGDAPGLK-VKDEMEEQGLGYILVK 120 (283)
T ss_dssp HHHC--CSEEEEECSCTTSHHHHHHHHHHHTSSSCEEEEEEGGGGG-GHHHHHHTTCEEEEET
T ss_pred hhcC--CCEEEEECCCCCCCCchHHHHHHHhCCCCEEEEcCCcchh-hHHHHHhcCCcEEEEe
Confidence 5555 9999887666778898888877667889999999766544 4567777777887554
No 391
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=66.43 E-value=3.1 Score=29.01 Aligned_cols=48 Identities=19% Similarity=0.112 Sum_probs=31.1
Q ss_pred HHHHHHHHHhCCCCCCchHHHHhh-CCCCCCHHHHHHHhhhhhhhhhcc
Q 027234 162 QQFVSAVKELGFDKAGPKKILELM-NIPGLTRENVASHLQKHRLYLSRL 209 (226)
Q Consensus 162 ~~Fi~~~~~~g~~~~~p~~I~~~~-~~~~lt~~~va~~l~~~r~~l~r~ 209 (226)
..|-..+...|+....-..+.-+. ..+++|..+||..++++++.++|.
T Consensus 13 ~~~~~~~~~~gl~~~~~~il~~L~~~~~~~t~~ela~~l~~~~stvs~~ 61 (152)
T 1ku9_A 13 ELFSELAKIHGLNKSVGAVYAILYLSDKPLTISDIMEELKISKGNVSMS 61 (152)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHCSSCEEHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHcCCChhHHHHHHHHHHcCCCCCHHHHHHHHCcCHHHHHHH
Confidence 344445566676543333222222 557899999999999999987763
No 392
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=66.20 E-value=1.8 Score=30.69 Aligned_cols=50 Identities=10% Similarity=0.070 Sum_probs=41.6
Q ss_pred hhHHHHHHHHHHhCCCCCCchHHHHhhC-----CCCCCHHHHHHHhhhhhhhhhc
Q 027234 159 ELHQQFVSAVKELGFDKAGPKKILELMN-----IPGLTRENVASHLQKHRLYLSR 208 (226)
Q Consensus 159 ~l~~~Fi~~~~~~g~~~~~p~~I~~~~~-----~~~lt~~~va~~l~~~r~~l~r 208 (226)
..|.-++....++|+....--.++..+. ++..|.++||..++++...+.|
T Consensus 16 ~ip~~LL~~y~~LgLs~~E~~lLl~L~~~~~~g~~~ps~~~LA~~~~~s~~~v~~ 70 (135)
T 2v79_A 16 TIPNLLLTHYKQLGLNETELILLLKIKMHLEKGSYFPTPNQLQEGMSISVEECTN 70 (135)
T ss_dssp EEEHHHHHHHHHHTCCHHHHHHHHHHHHHHTTTCCSCCHHHHHTTSSSCHHHHHH
T ss_pred cchHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHCcCHHHHHH
Confidence 4578888999999998877777777776 7789999999999999886655
No 393
>1gdt_A GD resolvase, protein (gamma delta resolvase); protein-DNA complex, double helix, overhanging base, DNA binding protein/DNA complex; 3.00A {Escherichia coli} SCOP: a.4.1.2 c.53.1.1 PDB: 1zr4_A 1zr2_A 2gm4_A 1res_A 1ret_A
Probab=66.02 E-value=1.9 Score=31.97 Aligned_cols=32 Identities=13% Similarity=0.286 Sum_probs=26.1
Q ss_pred hHHHHhhCCCCCCHHHHHHHhhhhhhhhhcccC
Q 027234 179 KKILELMNIPGLTRENVASHLQKHRLYLSRLSG 211 (226)
Q Consensus 179 ~~I~~~~~~~~lt~~~va~~l~~~r~~l~r~~~ 211 (226)
+.|.+.+.. +.+...||.+|++|++.+||+.+
T Consensus 149 ~~i~~~~~~-G~s~~~Ia~~l~is~~tv~r~l~ 180 (183)
T 1gdt_A 149 DAVLNMWQQ-GLGASHISKTMNIARSTVYKVIN 180 (183)
T ss_dssp HHHHHHHHT-TCCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHC-CCCHHHHHHHHCcCHHHHHHHHh
Confidence 356666654 89999999999999999998644
No 394
>3ivp_A Putative transposon-related DNA-binding protein; APC62618, clostridium diffic structural genomics, PSI-2, protein structure initiative; HET: PG4; 2.02A {Clostridium difficile}
Probab=65.93 E-value=1.9 Score=29.73 Aligned_cols=30 Identities=33% Similarity=0.481 Sum_probs=22.7
Q ss_pred HHHhhCCCCCCHHHHHHHhhhhhhhhhccc
Q 027234 181 ILELMNIPGLTRENVASHLQKHRLYLSRLS 210 (226)
Q Consensus 181 I~~~~~~~~lt~~~va~~l~~~r~~l~r~~ 210 (226)
|.+....-++|..++|..+++|+++++++-
T Consensus 17 lk~~R~~~glsq~~lA~~~gis~~~is~~E 46 (126)
T 3ivp_A 17 IKEARKKQGLTREQVGAMIEIDPRYLTNIE 46 (126)
T ss_dssp HHHHHHHTTCCHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHhCcCHHHHHHHH
Confidence 444444558899999999999999888753
No 395
>1izc_A Macrophomate synthase intermolecular diels-aldera; TIM-barrel, pyruvate Mg(II) complex, lyase; 1.70A {Macrophoma commelinae} SCOP: c.1.12.5
Probab=65.88 E-value=54 Score=26.85 Aligned_cols=82 Identities=15% Similarity=0.190 Sum_probs=54.7
Q ss_pred HHHHHHHHHhCCCCceEEEEccCCCCCCHHHHHHHHhc---CC--CCcEEEEeccCCHHHHHHHHhCCcceEE-eCCCCH
Q 027234 11 AEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVGL---EM--DLPVIMMCAHGSKEVVMKGVTHDACDYL-TKPVRI 84 (226)
Q Consensus 11 ~~eal~~l~~~~~~~DlVl~D~~mp~~dG~~l~~~l~~---~~--~~pvI~ls~~~~~~~~~~a~~~ga~~yl-~KP~~~ 84 (226)
..+.++.+.... +|.|++|+.-...+--.+...++. .. ..++++=+...+...+..++..|+++.+ +|=-+.
T Consensus 52 ~p~~~e~a~~~G--aD~vilDlEha~~~~e~~~~~l~a~~~~~~~~~~~~VRv~~~~~~di~~~LdaGa~gImlP~V~sa 129 (339)
T 1izc_A 52 STFVTKVLAATK--PDFVWIDVEHGMFNRLELHDAIHAAQHHSEGRSLVIVRVPKHDEVSLSTALDAGAAGIVIPHVETV 129 (339)
T ss_dssp CHHHHHHHHHTC--CSEEEEETTTSCCCHHHHHHHHHHHHHHTTTCSEEEEECCTTCHHHHHHHHHHTCSEEEETTCCCH
T ss_pred CHHHHHHHHhCC--CCEEEEECCCCCCcHHHHHHHHHHhhhcCCCCCeEEEEeCCCCHHHHHHHHhCCCCEEEeCCCCCH
Confidence 344555665544 999999997655554444444431 11 2667776666778888999999999744 555678
Q ss_pred HHHHHHHHHH
Q 027234 85 EELKNIWQHV 94 (226)
Q Consensus 85 ~~L~~~l~~~ 94 (226)
+++..+...+
T Consensus 130 ee~~~~~~~~ 139 (339)
T 1izc_A 130 EEVREFVKEM 139 (339)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 8887766553
No 396
>3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum}
Probab=65.83 E-value=17 Score=30.11 Aligned_cols=70 Identities=11% Similarity=0.136 Sum_probs=47.3
Q ss_pred EECCHHHHHHHHHhCCCCceEEEEccCCC-----------CCCHHHHHHHHh---cCCCCcEEEEeccCCHHHHHHHHhC
Q 027234 7 KCNRAEIALDMLRTNKNGYDIVISDVHMP-----------DMDGFKLLELVG---LEMDLPVIMMCAHGSKEVVMKGVTH 72 (226)
Q Consensus 7 ~~~~~~eal~~l~~~~~~~DlVl~D~~mp-----------~~dG~~l~~~l~---~~~~~pvI~ls~~~~~~~~~~a~~~ 72 (226)
.+.+.++|..+.+. +.|.|.+-+.-. +...++.+..+. ...++|||.-.+-.+...+.+++.+
T Consensus 152 ~v~t~e~A~~l~~a---GaD~I~VG~~~Gs~~~tr~~~g~g~p~~~~i~~v~~~~~~~~iPVIA~GGI~~~~di~kala~ 228 (361)
T 3khj_A 152 NVVTEEATKELIEN---GADGIKVGIGPGSICTTRIVAGVGVPQITAIEKCSSVASKFGIPIIADGGIRYSGDIGKALAV 228 (361)
T ss_dssp EECSHHHHHHHHHT---TCSEEEECSSCCTTCCHHHHTCBCCCHHHHHHHHHHHHHHHTCCEEEESCCCSHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHc---CcCEEEEecCCCcCCCcccccCCCCCcHHHHHHHHHHHhhcCCeEEEECCCCCHHHHHHHHHc
Confidence 56788888777663 378888732100 123345555442 2246899887777788999999999
Q ss_pred CcceEEe
Q 027234 73 DACDYLT 79 (226)
Q Consensus 73 ga~~yl~ 79 (226)
||++...
T Consensus 229 GAd~V~v 235 (361)
T 3khj_A 229 GASSVMI 235 (361)
T ss_dssp TCSEEEE
T ss_pred CCCEEEE
Confidence 9998764
No 397
>2g3b_A Putative TETR-family transcriptional regulator; transcription regulator, structural genomics, P protein structure initiative; HET: MSE; 2.00A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=65.56 E-value=1.8 Score=32.29 Aligned_cols=42 Identities=19% Similarity=0.065 Sum_probs=30.9
Q ss_pred HHHHHHHHHHhCCCCCCchHHHHhhCCCCCCHHHHHHHhhhhhhhhhcccCC
Q 027234 161 HQQFVSAVKELGFDKAGPKKILELMNIPGLTRENVASHLQKHRLYLSRLSGV 212 (226)
Q Consensus 161 ~~~Fi~~~~~~g~~~~~p~~I~~~~~~~~lt~~~va~~l~~~r~~l~r~~~~ 212 (226)
.++++.++.++ +.+ -.-.+.|+++||+..|+||..+|+=|+.
T Consensus 5 r~~Il~aA~~l---------f~~-~G~~~~s~~~IA~~AGvskgtlY~hF~s 46 (208)
T 2g3b_A 5 RDAILKASATA---------IAQ-RGIRGLRVNDVAEVAGVSPGLLYYHFKD 46 (208)
T ss_dssp HHHHHHHHHHH---------HHH-HHHHHCCHHHHHHHHTSCHHHHHHHHCS
T ss_pred HHHHHHHHHHH---------HHH-hCcccCCHHHHHHHhCCCHHHHHHHCCC
Confidence 35666776662 333 3344789999999999999999987764
No 398
>1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2
Probab=65.48 E-value=8.6 Score=29.67 Aligned_cols=82 Identities=12% Similarity=0.053 Sum_probs=51.9
Q ss_pred CHHHHHHHHHhCCCCceEEEEccC---C-CC-CCHHHHHHHHhcCCCCcEE--EEeccCCHHHHHHHHhCCcceEEeCCC
Q 027234 10 RAEIALDMLRTNKNGYDIVISDVH---M-PD-MDGFKLLELVGLEMDLPVI--MMCAHGSKEVVMKGVTHDACDYLTKPV 82 (226)
Q Consensus 10 ~~~eal~~l~~~~~~~DlVl~D~~---m-p~-~dG~~l~~~l~~~~~~pvI--~ls~~~~~~~~~~a~~~ga~~yl~KP~ 82 (226)
+..+.++.+.+.. .|++=+|+. . |. ..|.++++.++...+.|+. +++. +...+...+.+.||++...-..
T Consensus 18 ~l~~~i~~~~~~G--ad~ihldi~DG~fvp~~~~g~~~v~~lr~~~~~~~~vhlmv~-dp~~~i~~~~~aGadgv~vh~e 94 (230)
T 1tqj_A 18 RLGEEIKAVDEAG--ADWIHVDVMDGRFVPNITIGPLIVDAIRPLTKKTLDVHLMIV-EPEKYVEDFAKAGADIISVHVE 94 (230)
T ss_dssp GHHHHHHHHHHTT--CSEEEEEEEBSSSSSCBCBCHHHHHHHGGGCCSEEEEEEESS-SGGGTHHHHHHHTCSEEEEECS
T ss_pred HHHHHHHHHHHcC--CCEEEEEEEecCCCcchhhhHHHHHHHHhhcCCcEEEEEEcc-CHHHHHHHHHHcCCCEEEECcc
Confidence 4566677776533 777766662 1 22 3467999999865566766 5663 3334667789999999876655
Q ss_pred --CHHHHHHHHHHH
Q 027234 83 --RIEELKNIWQHV 94 (226)
Q Consensus 83 --~~~~L~~~l~~~ 94 (226)
..+.....++.+
T Consensus 95 ~~~~~~~~~~~~~i 108 (230)
T 1tqj_A 95 HNASPHLHRTLCQI 108 (230)
T ss_dssp TTTCTTHHHHHHHH
T ss_pred cccchhHHHHHHHH
Confidence 444555554444
No 399
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=65.27 E-value=1.2 Score=27.96 Aligned_cols=18 Identities=17% Similarity=0.167 Sum_probs=10.2
Q ss_pred CHHHHHHHhhhhhhhhhc
Q 027234 191 TRENVASHLQKHRLYLSR 208 (226)
Q Consensus 191 t~~~va~~l~~~r~~l~r 208 (226)
|..++|..++++++++++
T Consensus 13 sq~~lA~~lgvs~~~is~ 30 (79)
T 3bd1_A 13 SVSALAASLGVRQSAISN 30 (79)
T ss_dssp SHHHHHHHHTCCHHHHHH
T ss_pred CHHHHHHHHCCCHHHHHH
Confidence 555555555555555554
No 400
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=65.02 E-value=6.8 Score=25.08 Aligned_cols=21 Identities=19% Similarity=0.199 Sum_probs=18.6
Q ss_pred CCCCHHHHHHHhhhhhhhhhc
Q 027234 188 PGLTRENVASHLQKHRLYLSR 208 (226)
Q Consensus 188 ~~lt~~~va~~l~~~r~~l~r 208 (226)
.+.++.+||.++++++..+||
T Consensus 37 ~g~s~~~iA~~~gIs~sTl~r 57 (87)
T 2elh_A 37 DGESKASVARDIGVPESTLRG 57 (87)
T ss_dssp HTCCHHHHHHHHTCCHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHH
Confidence 378999999999999998886
No 401
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=65.02 E-value=4.3 Score=24.70 Aligned_cols=27 Identities=22% Similarity=0.337 Sum_probs=20.7
Q ss_pred HHHHhhCCCCCCHHHHHHHhhhhhhhhh
Q 027234 180 KILELMNIPGLTRENVASHLQKHRLYLS 207 (226)
Q Consensus 180 ~I~~~~~~~~lt~~~va~~l~~~r~~l~ 207 (226)
.|+..+ ..+++..+||..|++|+..++
T Consensus 18 ~il~~~-~~g~s~~eIA~~l~is~~tV~ 44 (74)
T 1fse_A 18 EVFELL-VQDKTTKEIASELFISEKTVR 44 (74)
T ss_dssp HHHHHH-TTTCCHHHHHHHHTSCHHHHH
T ss_pred HHHHHH-HcCCCHHHHHHHHCCCHHHHH
Confidence 355555 558999999999999987544
No 402
>4ich_A Transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, transcription RE; 1.95A {Saccharomonospora viridis}
Probab=65.02 E-value=4.2 Score=32.53 Aligned_cols=44 Identities=9% Similarity=0.084 Sum_probs=34.0
Q ss_pred hhHHHHHHHHHHhCCCCCCchHHHHhhCCCCCCHHHHHHHhhhhhhhhhcccCC
Q 027234 159 ELHQQFVSAVKELGFDKAGPKKILELMNIPGLTRENVASHLQKHRLYLSRLSGV 212 (226)
Q Consensus 159 ~l~~~Fi~~~~~~g~~~~~p~~I~~~~~~~~lt~~~va~~l~~~r~~l~r~~~~ 212 (226)
.-.++++.++.+ ++..-.-.++|+++||.+.++|+..+|+-|+.
T Consensus 120 ~~r~~il~aa~~----------l~~~~G~~~~T~~~IA~~AGvs~gtlY~yF~s 163 (311)
T 4ich_A 120 EARRRILETAWR----------LIARRGYHNVRIHDIASELGTSNATIHYHFPS 163 (311)
T ss_dssp HHHHHHHHHHHH----------HHHHHCGGGCCHHHHHHHHTCCHHHHHHHCSS
T ss_pred hHHHHHHHHHHH----------HHHHcCCccCCHHHHHHHhCCCchhHHHhCCC
Confidence 334667777777 34444556899999999999999999998874
No 403
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=65.01 E-value=3.1 Score=27.21 Aligned_cols=28 Identities=21% Similarity=0.338 Sum_probs=22.0
Q ss_pred HHHhhCCC-CCCHHHHHHHhhhhhhhhhc
Q 027234 181 ILELMNIP-GLTRENVASHLQKHRLYLSR 208 (226)
Q Consensus 181 I~~~~~~~-~lt~~~va~~l~~~r~~l~r 208 (226)
++..+... +.++.+||..+++|++.+||
T Consensus 14 ~v~~~~~~~g~s~~~ia~~~gIs~~tl~r 42 (97)
T 2jn6_A 14 AVALYENSDGASLQQIANDLGINRVTLKN 42 (97)
T ss_dssp HHHHHTTGGGSCHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHcCCChHHHHHHHHCcCHHHHHH
Confidence 33344344 88999999999999999886
No 404
>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}
Probab=64.53 E-value=14 Score=32.13 Aligned_cols=64 Identities=11% Similarity=0.073 Sum_probs=45.4
Q ss_pred HHHHHHHHhCCCCceEEEEccCCCCCC-HHHHHHHHhcC-CCCcEEEEeccCCHHHHHHHHhCCcceEEe
Q 027234 12 EIALDMLRTNKNGYDIVISDVHMPDMD-GFKLLELVGLE-MDLPVIMMCAHGSKEVVMKGVTHDACDYLT 79 (226)
Q Consensus 12 ~eal~~l~~~~~~~DlVl~D~~mp~~d-G~~l~~~l~~~-~~~pvI~ls~~~~~~~~~~a~~~ga~~yl~ 79 (226)
+.+-.+++ . ++|+|.+|...|... -+++++.++.. +++||++ ......+.+..+.++||+....
T Consensus 234 ~~a~~l~~-a--G~d~I~id~a~g~~~~~~~~i~~ir~~~p~~~Vi~-g~v~t~e~a~~l~~aGaD~I~V 299 (496)
T 4fxs_A 234 ERVKALVE-A--GVDVLLIDSSHGHSEGVLQRIRETRAAYPHLEIIG-GNVATAEGARALIEAGVSAVKV 299 (496)
T ss_dssp HHHHHHHH-T--TCSEEEEECSCTTSHHHHHHHHHHHHHCTTCCEEE-EEECSHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHh-c--cCceEEeccccccchHHHHHHHHHHHHCCCceEEE-cccCcHHHHHHHHHhCCCEEEE
Confidence 34444444 3 389999999887654 35778888744 5788876 3345678888999999998875
No 405
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=64.37 E-value=7.4 Score=24.40 Aligned_cols=30 Identities=23% Similarity=0.301 Sum_probs=24.2
Q ss_pred HHHHhhCC---CCCCHHHHHHHh-----hhhhhhhhcc
Q 027234 180 KILELMNI---PGLTRENVASHL-----QKHRLYLSRL 209 (226)
Q Consensus 180 ~I~~~~~~---~~lt~~~va~~l-----~~~r~~l~r~ 209 (226)
.|++.+.. ..+|.++|+.++ ++++..+||.
T Consensus 21 ~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~ 58 (83)
T 2fu4_A 21 KILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRV 58 (83)
T ss_dssp HHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHH
Confidence 46676654 469999999999 8899998884
No 406
>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0
Probab=64.23 E-value=32 Score=25.58 Aligned_cols=78 Identities=6% Similarity=-0.075 Sum_probs=47.9
Q ss_pred CHHHHHHHHHhCCCCceEEEEccCCCCC-------CHHHHHHHHhcC-CCCcEEEEeccCCHHHHHHHHhCCcceEEe--
Q 027234 10 RAEIALDMLRTNKNGYDIVISDVHMPDM-------DGFKLLELVGLE-MDLPVIMMCAHGSKEVVMKGVTHDACDYLT-- 79 (226)
Q Consensus 10 ~~~eal~~l~~~~~~~DlVl~D~~mp~~-------dG~~l~~~l~~~-~~~pvI~ls~~~~~~~~~~a~~~ga~~yl~-- 79 (226)
+..+.++.+.+.. .|.|-++ |+. .+++.++.++.. +++|+++-.+- ..+...++++.||++.+.
T Consensus 115 t~~~~~~~~~~~g--~d~i~v~---~g~~g~~~~~~~~~~i~~l~~~~~~~~i~~~gGI-~~~~~~~~~~~Gad~vvvGs 188 (211)
T 3f4w_A 115 DLPARVRLLEEAG--ADMLAVH---TGTDQQAAGRKPIDDLITMLKVRRKARIAVAGGI-SSQTVKDYALLGPDVVIVGS 188 (211)
T ss_dssp SHHHHHHHHHHHT--CCEEEEE---CCHHHHHTTCCSHHHHHHHHHHCSSCEEEEESSC-CTTTHHHHHTTCCSEEEECH
T ss_pred CHHHHHHHHHHcC--CCEEEEc---CCCcccccCCCCHHHHHHHHHHcCCCcEEEECCC-CHHHHHHHHHcCCCEEEECH
Confidence 4434344444433 7887776 332 256777888754 47888765554 477888899999999774
Q ss_pred ---CCCCHHHHHHHHHH
Q 027234 80 ---KPVRIEELKNIWQH 93 (226)
Q Consensus 80 ---KP~~~~~L~~~l~~ 93 (226)
+.-++.+-...+..
T Consensus 189 ai~~~~d~~~~~~~l~~ 205 (211)
T 3f4w_A 189 AITHAADPAGEARKISQ 205 (211)
T ss_dssp HHHTCSSHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHH
Confidence 44455444333333
No 407
>3cec_A Putative antidote protein of plasmid maintenance; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.60A {Nostoc punctiforme}
Probab=63.91 E-value=1.6 Score=28.92 Aligned_cols=31 Identities=13% Similarity=0.178 Sum_probs=23.9
Q ss_pred HHHhhCCCCCCHHHHHHHhhhhhhhhhcccC
Q 027234 181 ILELMNIPGLTRENVASHLQKHRLYLSRLSG 211 (226)
Q Consensus 181 I~~~~~~~~lt~~~va~~l~~~r~~l~r~~~ 211 (226)
|.+.+...++|..++|..+++++++++++-.
T Consensus 23 l~~~r~~~gltq~~lA~~~gis~~~is~~e~ 53 (104)
T 3cec_A 23 IADILDDLDINTANFAEILGVSNQTIQEVIN 53 (104)
T ss_dssp HHHHHHHHTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHHHHHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 3333444589999999999999999998644
No 408
>3f52_A CLP gene regulator (CLGR); helix-turn-helix motif, transcriptional ACTI human pathogen, transcription activator; 1.75A {Corynebacterium glutamicum} PDB: 3f51_A
Probab=63.88 E-value=1.5 Score=29.75 Aligned_cols=30 Identities=23% Similarity=0.233 Sum_probs=23.3
Q ss_pred HHHhhCCCCCCHHHHHHHhhhhhhhhhccc
Q 027234 181 ILELMNIPGLTRENVASHLQKHRLYLSRLS 210 (226)
Q Consensus 181 I~~~~~~~~lt~~~va~~l~~~r~~l~r~~ 210 (226)
|.+....-++|..++|..+++++++++++-
T Consensus 33 l~~~R~~~glsq~~lA~~~gis~~~is~~E 62 (117)
T 3f52_A 33 LRSFRADKGVTLRELAEASRVSPGYLSELE 62 (117)
T ss_dssp HHHHHHHHTCCHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHCcCHHHHHHHH
Confidence 333344458999999999999999999864
No 409
>2c6q_A GMP reductase 2; TIM barrel, metal-binding, NADP, oxidoreductase, potassium; HET: IMP NDP; 1.70A {Homo sapiens} PDB: 2bzn_A* 2a7r_A* 2ble_A* 2bwg_A*
Probab=63.25 E-value=31 Score=28.38 Aligned_cols=73 Identities=12% Similarity=0.082 Sum_probs=49.4
Q ss_pred EEECCHHHHHHHHHhCCCCceEEEEccCCCC------------CCHHHHHHHHh---cCCCCcEEEEeccCCHHHHHHHH
Q 027234 6 TKCNRAEIALDMLRTNKNGYDIVISDVHMPD------------MDGFKLLELVG---LEMDLPVIMMCAHGSKEVVMKGV 70 (226)
Q Consensus 6 ~~~~~~~eal~~l~~~~~~~DlVl~D~~mp~------------~dG~~l~~~l~---~~~~~pvI~ls~~~~~~~~~~a~ 70 (226)
..+.+.++|....+. +.|.|.+... |+ ...+..+..+. ....+|||.-.+-.+...+.+|+
T Consensus 167 g~v~t~e~A~~a~~a---GaD~I~v~~g-~G~~~~~r~~~g~~~p~~~~l~~v~~~~~~~~ipvIa~GGI~~g~di~kAl 242 (351)
T 2c6q_A 167 GNVVTGEMVEELILS---GADIIKVGIG-PGSVCTTRKKTGVGYPQLSAVMECADAAHGLKGHIISDGGCSCPGDVAKAF 242 (351)
T ss_dssp EEECSHHHHHHHHHT---TCSEEEECSS-CSTTBCHHHHHCBCCCHHHHHHHHHHHHHHTTCEEEEESCCCSHHHHHHHH
T ss_pred EeCCCHHHHHHHHHh---CCCEEEECCC-CCcCcCccccCCCCccHHHHHHHHHHHHhhcCCcEEEeCCCCCHHHHHHHH
Confidence 357788888877764 3798877532 21 12233443332 22468999888888999999999
Q ss_pred hCCcceEE-eCCC
Q 027234 71 THDACDYL-TKPV 82 (226)
Q Consensus 71 ~~ga~~yl-~KP~ 82 (226)
.+||+... -+||
T Consensus 243 alGA~~V~vG~~f 255 (351)
T 2c6q_A 243 GAGADFVMLGGML 255 (351)
T ss_dssp HTTCSEEEESTTT
T ss_pred HcCCCceeccHHH
Confidence 99999764 4554
No 410
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=63.21 E-value=5.9 Score=27.41 Aligned_cols=44 Identities=23% Similarity=0.244 Sum_probs=30.1
Q ss_pred HHHHHhCCCCCCchHHHHh-hCCCCCCHHHHHHHhhhhhhhhhcc
Q 027234 166 SAVKELGFDKAGPKKILEL-MNIPGLTRENVASHLQKHRLYLSRL 209 (226)
Q Consensus 166 ~~~~~~g~~~~~p~~I~~~-~~~~~lt~~~va~~l~~~r~~l~r~ 209 (226)
..+...|+....-..+..+ ...+++|..+||.+++++++.+++.
T Consensus 28 ~~~~~~~l~~~~~~iL~~l~~~~~~~t~~~la~~l~~s~~~vs~~ 72 (146)
T 2fbh_A 28 RRLSHLGLSQARWLVLLHLARHRDSPTQRELAQSVGVEGPTLARL 72 (146)
T ss_dssp HHTGGGCCTTTHHHHHHHHHHCSSCCBHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHCCCCHHHHHHHHHHHHcCCCCCHHHHHHHhCCChhhHHHH
Confidence 3344556654444444444 4677899999999999999977653
No 411
>3iwp_A Copper homeostasis protein CUTC homolog; conserved sequence motif, metal-binding site, polymorphism, metal binding protein; 2.50A {Homo sapiens}
Probab=63.04 E-value=26 Score=28.12 Aligned_cols=84 Identities=13% Similarity=0.128 Sum_probs=55.5
Q ss_pred EECCHHHHHHHHHhCCCCceEE-EEc-cCCCC-CCHHHHHHHHhcCCCCcEEEEeccCCH-------------HHHHHHH
Q 027234 7 KCNRAEIALDMLRTNKNGYDIV-ISD-VHMPD-MDGFKLLELVGLEMDLPVIMMCAHGSK-------------EVVMKGV 70 (226)
Q Consensus 7 ~~~~~~eal~~l~~~~~~~DlV-l~D-~~mp~-~dG~~l~~~l~~~~~~pvI~ls~~~~~-------------~~~~~a~ 70 (226)
++.+.+.+....+... |-| ||| +..++ ..+..+++.+++..++||.+|.-.-.. +.+..+.
T Consensus 45 c~~s~~~a~~A~~gGA---dRIELc~~l~~GGlTPS~g~i~~a~~~~~ipV~vMIRPRgGdF~Ys~~E~~~M~~dI~~~~ 121 (287)
T 3iwp_A 45 CVDSVESAVNAERGGA---DRIELCSGLSEGGTTPSMGVLQVVKQSVQIPVFVMIRPRGGDFLYSDREIEVMKADIRLAK 121 (287)
T ss_dssp EESSHHHHHHHHHHTC---SEEEECBCGGGTCBCCCHHHHHHHHTTCCSCEEEECCSSSSCSCCCHHHHHHHHHHHHHHH
T ss_pred EeCCHHHHHHHHHhCC---CEEEECCCCCCCCCCCCHHHHHHHHHhcCCCeEEEEecCCCCcccCHHHHHHHHHHHHHHH
Confidence 5778888888877654 333 333 22344 357888888887678999887643332 4677888
Q ss_pred hCCcceEEeCC------CCHHHHHHHHHH
Q 027234 71 THDACDYLTKP------VRIEELKNIWQH 93 (226)
Q Consensus 71 ~~ga~~yl~KP------~~~~~L~~~l~~ 93 (226)
++||+++..=- ++.+.+...+..
T Consensus 122 ~~GAdGvVfG~L~~dg~iD~~~~~~Li~~ 150 (287)
T 3iwp_A 122 LYGADGLVFGALTEDGHIDKELCMSLMAI 150 (287)
T ss_dssp HTTCSEEEECCBCTTSCBCHHHHHHHHHH
T ss_pred HcCCCEEEEeeeCCCCCcCHHHHHHHHHH
Confidence 99999988653 455566555543
No 412
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=62.90 E-value=7.2 Score=26.05 Aligned_cols=44 Identities=20% Similarity=0.101 Sum_probs=30.5
Q ss_pred HHHHHHHHhCCCCCCchHHHHhhCCCCCCHHHHHHHhhhhhhhhhc
Q 027234 163 QFVSAVKELGFDKAGPKKILELMNIPGLTRENVASHLQKHRLYLSR 208 (226)
Q Consensus 163 ~Fi~~~~~~g~~~~~p~~I~~~~~~~~lt~~~va~~l~~~r~~l~r 208 (226)
.+....+.++-. .-..|+..+.....+..+||..++++++.+++
T Consensus 14 ~~~~~~~al~~~--~r~~IL~~L~~~~~s~~eLa~~lgis~stvs~ 57 (108)
T 2kko_A 14 QVARVGKALANG--RRLQILDLLAQGERAVEAIATATGMNLTTASA 57 (108)
T ss_dssp HHHHHHHHHTTS--TTHHHHHHHTTCCEEHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHhCCH--HHHHHHHHHHcCCcCHHHHHHHHCcCHHHHHH
Confidence 444444554422 22357777777789999999999999997765
No 413
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=62.85 E-value=12 Score=23.21 Aligned_cols=51 Identities=22% Similarity=0.258 Sum_probs=37.2
Q ss_pred ceeeeHhhHHHHHHHHHHhCCCC---CCchHHHHhhCCCCCCHHHHHHHhhhhhhh
Q 027234 153 RLVWSVELHQQFVSAVKELGFDK---AGPKKILELMNIPGLTRENVASHLQKHRLY 205 (226)
Q Consensus 153 ~~~~~~~l~~~Fi~~~~~~g~~~---~~p~~I~~~~~~~~lt~~~va~~l~~~r~~ 205 (226)
+-.||.+-+..|+.++...|.+. ..=..|-+.| ++=|..++.+|.++|-..
T Consensus 8 ~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~--~~Rt~~qcr~r~~~~l~~ 61 (75)
T 2yum_A 8 NQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADEL--GNRTAKQVASQVQKYFIK 61 (75)
T ss_dssp SSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHH--SSSCHHHHHHHHHHHHGG
T ss_pred CCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHh--CCCCHHHHHHHHHHHHHH
Confidence 45799999999999999998644 2233565664 567888998888765443
No 414
>4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3}
Probab=62.46 E-value=22 Score=27.50 Aligned_cols=81 Identities=11% Similarity=0.014 Sum_probs=51.7
Q ss_pred EEEECCHHHHHHHHHhC-CCCceEEEEccCCCCCCHHHHHHHHhcCCCCcEEEEeccCCHHHHHHHHhCCcceEEeCCCC
Q 027234 5 VTKCNRAEIALDMLRTN-KNGYDIVISDVHMPDMDGFKLLELVGLEMDLPVIMMCAHGSKEVVMKGVTHDACDYLTKPVR 83 (226)
Q Consensus 5 V~~~~~~~eal~~l~~~-~~~~DlVl~D~~mp~~dG~~l~~~l~~~~~~pvI~ls~~~~~~~~~~a~~~ga~~yl~KP~~ 83 (226)
|....+.+++.++++.. ..+.++|=+.++ .-++.+.++.++....-.+|-...-.+.+....++..||+..++.-++
T Consensus 39 Vir~~~~~~a~~~a~al~~gGi~~iEvt~~--t~~a~e~I~~l~~~~~~~~iGaGTVlt~~~a~~Ai~AGA~fIvsP~~~ 116 (232)
T 4e38_A 39 VIAIDNAEDIIPLGKVLAENGLPAAEITFR--SDAAVEAIRLLRQAQPEMLIGAGTILNGEQALAAKEAGATFVVSPGFN 116 (232)
T ss_dssp EECCSSGGGHHHHHHHHHHTTCCEEEEETT--STTHHHHHHHHHHHCTTCEEEEECCCSHHHHHHHHHHTCSEEECSSCC
T ss_pred EEEcCCHHHHHHHHHHHHHCCCCEEEEeCC--CCCHHHHHHHHHHhCCCCEEeECCcCCHHHHHHHHHcCCCEEEeCCCC
Confidence 44456667777665532 134666655554 456899999887543223444444556899999999999866665555
Q ss_pred HHHH
Q 027234 84 IEEL 87 (226)
Q Consensus 84 ~~~L 87 (226)
++.+
T Consensus 117 ~~vi 120 (232)
T 4e38_A 117 PNTV 120 (232)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5444
No 415
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=62.25 E-value=2.2 Score=29.69 Aligned_cols=33 Identities=18% Similarity=0.198 Sum_probs=27.2
Q ss_pred CchHHHHhhCCCCCCHHHHHHHhhhhhhhhhcc
Q 027234 177 GPKKILELMNIPGLTRENVASHLQKHRLYLSRL 209 (226)
Q Consensus 177 ~p~~I~~~~~~~~lt~~~va~~l~~~r~~l~r~ 209 (226)
.+..|.+....-++|+.++|..+++|+++++|.
T Consensus 72 ~~~~l~~~R~~~glsq~~la~~~g~s~~~i~~~ 104 (133)
T 3o9x_A 72 APEFIVKVRKKLSLTQKEASEIFGGGVNAFSRY 104 (133)
T ss_dssp CHHHHHHHHHHTTCCHHHHHHHHCSCTTHHHHH
T ss_pred CHHHHHHHHHHcCCCHHHHHHHHCCCHHHHHHH
Confidence 345566666677999999999999999998875
No 416
>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp}
Probab=62.18 E-value=12 Score=29.27 Aligned_cols=83 Identities=13% Similarity=0.073 Sum_probs=56.1
Q ss_pred CHHHHHHHHHhCCCCceEEEEccCC----CC-CCHHHHHHHHhcC-CCCcEEE-EeccCCHHHHHHHHhCCcceEEeCCC
Q 027234 10 RAEIALDMLRTNKNGYDIVISDVHM----PD-MDGFKLLELVGLE-MDLPVIM-MCAHGSKEVVMKGVTHDACDYLTKPV 82 (226)
Q Consensus 10 ~~~eal~~l~~~~~~~DlVl~D~~m----p~-~dG~~l~~~l~~~-~~~pvI~-ls~~~~~~~~~~a~~~ga~~yl~KP~ 82 (226)
+..+.++.+.+.. .|.+=+|++- |. .-|..+++.|+.. ++.|+.+ +-..+...+...+.++||+....-.-
T Consensus 41 ~L~~~i~~l~~~G--~d~lHvDVmDg~FVpnit~G~~~v~~lr~~~p~~~ldvHLmv~~p~~~i~~~~~aGAd~itvH~E 118 (246)
T 3inp_A 41 RLGDDVKAVLAAG--ADNIHFDVMDNHYVPNLTFGPMVLKALRDYGITAGMDVHLMVKPVDALIESFAKAGATSIVFHPE 118 (246)
T ss_dssp GHHHHHHHHHHTT--CCCEEEEEEBSSSSSCBCCCHHHHHHHHHHTCCSCEEEEEECSSCHHHHHHHHHHTCSEEEECGG
T ss_pred hHHHHHHHHHHcC--CCEEEEEecCCCcCcchhcCHHHHHHHHHhCCCCeEEEEEeeCCHHHHHHHHHHcCCCEEEEccc
Confidence 4577888887744 7777777654 33 3488999999854 4788766 44444556778888999998777655
Q ss_pred CHHHHHHHHHHH
Q 027234 83 RIEELKNIWQHV 94 (226)
Q Consensus 83 ~~~~L~~~l~~~ 94 (226)
....+...++.+
T Consensus 119 a~~~~~~~i~~i 130 (246)
T 3inp_A 119 ASEHIDRSLQLI 130 (246)
T ss_dssp GCSCHHHHHHHH
T ss_pred cchhHHHHHHHH
Confidence 444555555554
No 417
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=61.93 E-value=4 Score=25.10 Aligned_cols=21 Identities=19% Similarity=0.116 Sum_probs=17.6
Q ss_pred CCCCHHHHHHHhhhhhhhhhc
Q 027234 188 PGLTRENVASHLQKHRLYLSR 208 (226)
Q Consensus 188 ~~lt~~~va~~l~~~r~~l~r 208 (226)
.++|..+||..|++|+..+++
T Consensus 29 ~~~s~~eIA~~l~is~~tV~~ 49 (73)
T 1ku3_A 29 REHTLEEVGAYFGVTRERIRQ 49 (73)
T ss_dssp SCCCHHHHHHHHTCCHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHH
Confidence 689999999999999886553
No 418
>1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A
Probab=61.81 E-value=60 Score=28.50 Aligned_cols=78 Identities=14% Similarity=0.114 Sum_probs=53.0
Q ss_pred HHHHHHHHhCCCCceE-EEEccCCCCC-C--HHHHHHHHhcCCCCcEEEEeccCCHHHHHHHHh-CCcceEEe------C
Q 027234 12 EIALDMLRTNKNGYDI-VISDVHMPDM-D--GFKLLELVGLEMDLPVIMMCAHGSKEVVMKGVT-HDACDYLT------K 80 (226)
Q Consensus 12 ~eal~~l~~~~~~~Dl-Vl~D~~mp~~-d--G~~l~~~l~~~~~~pvI~ls~~~~~~~~~~a~~-~ga~~yl~------K 80 (226)
.+..+.+.+.. ++. +++|+.-.++ . -+++++.++....+|||.-.+-.+.+.+.++++ .|+++.+. .
T Consensus 455 ~e~a~~~~~~G--a~~il~t~~~~dG~~~G~d~~li~~l~~~~~iPVIasGGi~s~~d~~~~~~~~G~~gvivg~a~~~~ 532 (555)
T 1jvn_A 455 WELTRACEALG--AGEILLNCIDKDGSNSGYDLELIEHVKDAVKIPVIASSGAGVPEHFEEAFLKTRADACLGAGMFHRG 532 (555)
T ss_dssp HHHHHHHHHTT--CCEEEECCGGGTTTCSCCCHHHHHHHHHHCSSCEEECSCCCSHHHHHHHHHHSCCSEEEESHHHHTT
T ss_pred HHHHHHHHHcC--CCEEEEeCCCCCCCCCCCCHHHHHHHHHhCCccEEEECCCCCHHHHHHHHHhcCChHHHHHHHHHcC
Confidence 34444444432 554 4456533222 2 378888888777899998777778899999998 89999774 4
Q ss_pred CCCHHHHHHHH
Q 027234 81 PVRIEELKNIW 91 (226)
Q Consensus 81 P~~~~~L~~~l 91 (226)
|++..+++..+
T Consensus 533 ~~~~~e~~~~l 543 (555)
T 1jvn_A 533 EFTVNDVKEYL 543 (555)
T ss_dssp SCCHHHHHHHH
T ss_pred CCCHHHHHHHH
Confidence 78888876654
No 419
>2l0k_A Stage III sporulation protein D; SPOIIID, solution structure, DNA binding, bacillus subti transcription factor, transcription; NMR {Bacillus subtilis}
Probab=61.27 E-value=1.9 Score=28.54 Aligned_cols=31 Identities=10% Similarity=-0.052 Sum_probs=24.1
Q ss_pred HHHhhCCCCCCHHHHHHHhhhhhhhhhcccC
Q 027234 181 ILELMNIPGLTRENVASHLQKHRLYLSRLSG 211 (226)
Q Consensus 181 I~~~~~~~~lt~~~va~~l~~~r~~l~r~~~ 211 (226)
|++.+...+.|+.+||.++++|+..++|...
T Consensus 12 I~~~l~~~~~ti~dlA~~~gVS~~TVsR~L~ 42 (93)
T 2l0k_A 12 IGKYIVETKKTVRVIAKEFGVSKSTVHKDLT 42 (93)
T ss_dssp HHHHHHHHCCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHHHHHcCCCHHHHHHHHCCCHHHHHHHHc
Confidence 4444444458999999999999999999654
No 420
>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}
Probab=60.88 E-value=23 Score=30.67 Aligned_cols=67 Identities=15% Similarity=0.038 Sum_probs=46.4
Q ss_pred CHHHHHHHHHhCCCCceEEEEccCCCCCC-HHHHHHHHhcC-CCCcEEEEeccCCHHHHHHHHhCCcceEEe
Q 027234 10 RAEIALDMLRTNKNGYDIVISDVHMPDMD-GFKLLELVGLE-MDLPVIMMCAHGSKEVVMKGVTHDACDYLT 79 (226)
Q Consensus 10 ~~~eal~~l~~~~~~~DlVl~D~~mp~~d-G~~l~~~l~~~-~~~pvI~ls~~~~~~~~~~a~~~ga~~yl~ 79 (226)
+..+..+.+.+.. +|+|.+|...+... -.++++.++.. +++||++ ......+.+..+.++||+....
T Consensus 229 ~~~~~a~~l~~aG--~d~I~id~a~g~~~~~~~~v~~i~~~~p~~~Vi~-g~v~t~e~a~~l~~aGaD~I~v 297 (490)
T 4avf_A 229 DTGERVAALVAAG--VDVVVVDTAHGHSKGVIERVRWVKQTFPDVQVIG-GNIATAEAAKALAEAGADAVKV 297 (490)
T ss_dssp THHHHHHHHHHTT--CSEEEEECSCCSBHHHHHHHHHHHHHCTTSEEEE-EEECSHHHHHHHHHTTCSEEEE
T ss_pred chHHHHHHHhhcc--cceEEecccCCcchhHHHHHHHHHHHCCCceEEE-eeeCcHHHHHHHHHcCCCEEEE
Confidence 3344444444433 99999998876543 35677888744 4778776 3345678889999999998875
No 421
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=60.85 E-value=4.1 Score=25.73 Aligned_cols=19 Identities=11% Similarity=0.198 Sum_probs=15.8
Q ss_pred CCCHHHHHHHhhhhhhhhh
Q 027234 189 GLTRENVASHLQKHRLYLS 207 (226)
Q Consensus 189 ~lt~~~va~~l~~~r~~l~ 207 (226)
.+|..+||..|+++++.++
T Consensus 31 ~~t~~eLA~~Lgvs~~tV~ 49 (77)
T 1qgp_A 31 ATTAHDLSGKLGTPKKEIN 49 (77)
T ss_dssp CEEHHHHHHHHCCCHHHHH
T ss_pred CcCHHHHHHHHCcCHHHHH
Confidence 6899999999999888543
No 422
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=60.60 E-value=2.2 Score=27.44 Aligned_cols=19 Identities=11% Similarity=0.198 Sum_probs=16.3
Q ss_pred CCCHHHHHHHhhhhhhhhh
Q 027234 189 GLTRENVASHLQKHRLYLS 207 (226)
Q Consensus 189 ~lt~~~va~~l~~~r~~l~ 207 (226)
.+|..+||..|+++|+.++
T Consensus 27 ~~t~~eLA~~Lgvsr~tV~ 45 (81)
T 1qbj_A 27 ATTAHDLSGKLGTPKKEIN 45 (81)
T ss_dssp CBCHHHHHHHHTCCHHHHH
T ss_pred CcCHHHHHHHHCcCHHHHH
Confidence 6999999999999998543
No 423
>1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A*
Probab=60.59 E-value=41 Score=26.81 Aligned_cols=67 Identities=13% Similarity=0.015 Sum_probs=41.2
Q ss_pred HHHHHHHHHhCCCCce-EEEEccCCCCCCH-----------HHHHHHHhcCCCCcEEE-EeccCCHHH----HHHHHhCC
Q 027234 11 AEIALDMLRTNKNGYD-IVISDVHMPDMDG-----------FKLLELVGLEMDLPVIM-MCAHGSKEV----VMKGVTHD 73 (226)
Q Consensus 11 ~~eal~~l~~~~~~~D-lVl~D~~mp~~dG-----------~~l~~~l~~~~~~pvI~-ls~~~~~~~----~~~a~~~g 73 (226)
..++.+.+.+.. +| .|-+.+.-|...| .++++.++...++||++ ++...+.+. +..+.+.|
T Consensus 108 ~~~~a~~~~~~g--~d~~iein~~~P~~~g~~~~g~~~e~~~~iv~~vr~~~~~Pv~vKi~~~~~~~~~~~~a~~~~~~G 185 (311)
T 1jub_A 108 NIAMLKKIQESD--FSGITELNLSCPNVPGEPQLAYDFEATEKLLKEVFTFFTKPLGVKLPPYFDLVHFDIMAEILNQFP 185 (311)
T ss_dssp HHHHHHHHHHSC--CCSEEEEESCCCCSSSCCCGGGCHHHHHHHHHHHTTTCCSCEEEEECCCCSHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHhcC--CCeEEEEeccCCCCCCcccccCCHHHHHHHHHHHHHhcCCCEEEEECCCCCHHHHHHHHHHHHHcC
Confidence 344555555543 78 8888776554321 45667777656789887 444334322 56677789
Q ss_pred cceEEe
Q 027234 74 ACDYLT 79 (226)
Q Consensus 74 a~~yl~ 79 (226)
+++...
T Consensus 186 ~d~i~v 191 (311)
T 1jub_A 186 LTYVNS 191 (311)
T ss_dssp CCEEEE
T ss_pred CcEEEe
Confidence 887654
No 424
>2id6_A Transcriptional regulator, TETR family; 1.75A {Thermotoga maritima} SCOP: a.4.1.9 a.121.1.1 PDB: 3ih2_A 3ih3_A 3ih4_A 1zkg_A* 2iek_A* 1z77_A*
Probab=60.33 E-value=2.5 Score=31.26 Aligned_cols=42 Identities=10% Similarity=0.033 Sum_probs=31.3
Q ss_pred HHHHHHHHHHhCCCCCCchHHHHhhCCCCCCHHHHHHHhhhhhhhhhcccCC
Q 027234 161 HQQFVSAVKELGFDKAGPKKILELMNIPGLTRENVASHLQKHRLYLSRLSGV 212 (226)
Q Consensus 161 ~~~Fi~~~~~~g~~~~~p~~I~~~~~~~~lt~~~va~~l~~~r~~l~r~~~~ 212 (226)
.++++.++.++ +.+ -.-.+.|+++||.+.|+||..+|+-|+.
T Consensus 7 r~~Il~aA~~l---------f~~-~Gy~~~s~~~IA~~AgvskgtlY~yF~s 48 (202)
T 2id6_A 7 RDAILKAAVEV---------FGK-KGYDRATTDEIAEKAGVAKGLIFHYFKN 48 (202)
T ss_dssp HHHHHHHHHHH---------HHH-HHHHHCCHHHHHHHHTCCTHHHHHHHSS
T ss_pred HHHHHHHHHHH---------HHH-cCcccCCHHHHHHHhCCCHHHHHHHcCC
Confidence 45677777772 333 2344789999999999999999987764
No 425
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*
Probab=60.25 E-value=36 Score=29.47 Aligned_cols=69 Identities=13% Similarity=0.109 Sum_probs=49.7
Q ss_pred EECCHHHHHHHHHhCCCCceEEEEccC--------------CCCCCHHHHHHHHhcCCCCcEEEEeccCCHHHHHHHHhC
Q 027234 7 KCNRAEIALDMLRTNKNGYDIVISDVH--------------MPDMDGFKLLELVGLEMDLPVIMMCAHGSKEVVMKGVTH 72 (226)
Q Consensus 7 ~~~~~~eal~~l~~~~~~~DlVl~D~~--------------mp~~dG~~l~~~l~~~~~~pvI~ls~~~~~~~~~~a~~~ 72 (226)
.+.+.++|..+.+.. .|.|.+-.. +|....+.++..++...++|||.-.+-.+...+.+++.+
T Consensus 303 ~v~t~~~a~~l~~aG---ad~I~vg~~~G~~~~t~~~~~~g~~~~~~~~~~~~~~~~~~ipVia~GGI~~~~di~kala~ 379 (514)
T 1jcn_A 303 NVVTAAQAKNLIDAG---VDGLRVGMGCGSICITQEVMACGRPQGTAVYKVAEYARRFGVPIIADGGIQTVGHVVKALAL 379 (514)
T ss_dssp EECSHHHHHHHHHHT---CSEEEECSSCSCCBTTBCCCSCCCCHHHHHHHHHHHHGGGTCCEEEESCCCSHHHHHHHHHT
T ss_pred ccchHHHHHHHHHcC---CCEEEECCCCCcccccccccCCCccchhHHHHHHHHHhhCCCCEEEECCCCCHHHHHHHHHc
Confidence 467788887776643 788877332 122234566677766568999988888889999999999
Q ss_pred CcceEE
Q 027234 73 DACDYL 78 (226)
Q Consensus 73 ga~~yl 78 (226)
||+...
T Consensus 380 GAd~V~ 385 (514)
T 1jcn_A 380 GASTVM 385 (514)
T ss_dssp TCSEEE
T ss_pred CCCeee
Confidence 998765
No 426
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=60.17 E-value=5.8 Score=25.09 Aligned_cols=27 Identities=26% Similarity=0.395 Sum_probs=20.6
Q ss_pred HHHHhhCCCCCCHHHHHHHhhhhhhhhh
Q 027234 180 KILELMNIPGLTRENVASHLQKHRLYLS 207 (226)
Q Consensus 180 ~I~~~~~~~~lt~~~va~~l~~~r~~l~ 207 (226)
.|+.++ ..|++..+||..|++|...++
T Consensus 28 ~vl~l~-~~g~s~~eIA~~l~is~~tV~ 54 (82)
T 1je8_A 28 DILKLI-AQGLPNKMIARRLDITESTVK 54 (82)
T ss_dssp HHHHHH-TTTCCHHHHHHHHTSCHHHHH
T ss_pred HHHHHH-HcCCCHHHHHHHHCcCHHHHH
Confidence 355555 569999999999999877543
No 427
>1ep3_A Dihydroorotate dehydrogenase B (PYRD subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ep2_A* 1ep1_A*
Probab=60.08 E-value=53 Score=25.98 Aligned_cols=56 Identities=18% Similarity=0.288 Sum_probs=40.2
Q ss_pred HHHHHHHhcCCCCcEEEEeccCCHHHHHHHHhCCcceEE------eCCCCHHHHHHHHHHHH
Q 027234 40 FKLLELVGLEMDLPVIMMCAHGSKEVVMKGVTHDACDYL------TKPVRIEELKNIWQHVV 95 (226)
Q Consensus 40 ~~l~~~l~~~~~~pvI~ls~~~~~~~~~~a~~~ga~~yl------~KP~~~~~L~~~l~~~~ 95 (226)
+++++.++...++|||...+-.+.+.+.+++..||+... .-|....++..-+...+
T Consensus 230 ~~~i~~i~~~~~ipvia~GGI~~~~d~~~~l~~GAd~V~vg~~~l~~p~~~~~i~~~l~~~~ 291 (311)
T 1ep3_A 230 LKLIHQVAQDVDIPIIGMGGVANAQDVLEMYMAGASAVAVGTANFADPFVCPKIIDKLPELM 291 (311)
T ss_dssp HHHHHHHHTTCSSCEEECSSCCSHHHHHHHHHHTCSEEEECTHHHHCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCEEEECCcCCHHHHHHHHHcCCCEEEECHHHHcCcHHHHHHHHHHHHHH
Confidence 477778876668999887777789999999999988764 34555555555554443
No 428
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=59.93 E-value=19 Score=27.08 Aligned_cols=74 Identities=18% Similarity=0.118 Sum_probs=46.6
Q ss_pred CcEEEEE---CCHHHHHHHHHhCCCCceEEEEccCCCC-CCH-HHHHHHHhcC---CCCcEEEEeccCCHHHHHHHHhCC
Q 027234 2 GFSVTKC---NRAEIALDMLRTNKNGYDIVISDVHMPD-MDG-FKLLELVGLE---MDLPVIMMCAHGSKEVVMKGVTHD 73 (226)
Q Consensus 2 g~~V~~~---~~~~eal~~l~~~~~~~DlVl~D~~mp~-~dG-~~l~~~l~~~---~~~pvI~ls~~~~~~~~~~a~~~g 73 (226)
||+|... -..++..+.+.+.. ||+|.+...|+. +.. -++++.++.. +++||++=-...+.+.. ...|
T Consensus 116 G~~v~~LG~~vp~~~l~~~~~~~~--~d~v~lS~~~~~~~~~~~~~i~~l~~~~~~~~~~v~vGG~~~~~~~~---~~~g 190 (210)
T 1y80_A 116 GFTVYNLGVDIEPGKFVEAVKKYQ--PDIVGMSALLTTTMMNMKSTIDALIAAGLRDRVKVIVGGAPLSQDFA---DEIG 190 (210)
T ss_dssp TCEEEECCSSBCHHHHHHHHHHHC--CSEEEEECCSGGGTHHHHHHHHHHHHTTCGGGCEEEEESTTCCHHHH---HHHT
T ss_pred CCEEEECCCCCCHHHHHHHHHHcC--CCEEEEeccccccHHHHHHHHHHHHhcCCCCCCeEEEECCCCCHHHH---HHcC
Confidence 7787743 35677778887766 999999988764 333 3345666532 34777655444444433 4568
Q ss_pred cceEEeC
Q 027234 74 ACDYLTK 80 (226)
Q Consensus 74 a~~yl~K 80 (226)
++.|-.-
T Consensus 191 ad~~~~d 197 (210)
T 1y80_A 191 ADGYAPD 197 (210)
T ss_dssp CSEECSS
T ss_pred CeEEECC
Confidence 8877643
No 429
>1r8j_A KAIA; circadian clock protein; 2.03A {Synechococcus elongatus pcc 7942} SCOP: a.186.1.1 c.23.1.5 PDB: 1m2e_A 1m2f_A
Probab=59.80 E-value=64 Score=25.60 Aligned_cols=94 Identities=12% Similarity=0.147 Sum_probs=59.1
Q ss_pred cEEEEECCHHHHHHHHHhCCCCceEEEEccCCCCCCHHHHHHHHh-cCCCCcEEEEeccCCHHHHHH--HHhCCcceEEe
Q 027234 3 FSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVG-LEMDLPVIMMCAHGSKEVVMK--GVTHDACDYLT 79 (226)
Q Consensus 3 ~~V~~~~~~~eal~~l~~~~~~~DlVl~D~~mp~~dG~~l~~~l~-~~~~~pvI~ls~~~~~~~~~~--a~~~ga~~yl~ 79 (226)
|.++.+.+.++.++.++++...+|++++..- +..-..+...+. +..-.|+|++........... .+-....+.-.
T Consensus 34 Y~l~~~~s~~~f~~~le~~~e~iDcLvle~~--~~~~~~~~~~L~~~g~lLP~vil~~~~~~~~~~~~~~~~yh~aEv~l 111 (289)
T 1r8j_A 34 YQLQVCESGEMLLEYAQTHRDQIDCLILVAA--NPSFRAVVQQLCFEGVVVPAIVVGDRDSEDPDEPAKEQLYHSAELHL 111 (289)
T ss_dssp EEEEEECSHHHHHHHHHHSTTSCSEEEEETT--STTHHHHHHHHHHTTCCCCEEEESCCC------CCSSCSSBTTCEEE
T ss_pred eEEEEcCcHHHHHHHHHhccccCCEEEEEeC--CCccHHHHHHHHHcCccccEEEeccCccccCCCCccceeccHHHHcC
Confidence 7888899999999999888778999998741 234566667775 455689998865422000000 12223333334
Q ss_pred CCCCHHHHHHHHHHHHHHH
Q 027234 80 KPVRIEELKNIWQHVVRKR 98 (226)
Q Consensus 80 KP~~~~~L~~~l~~~~~~~ 98 (226)
..-..+++...|.+++..-
T Consensus 112 ~~~ql~~l~~~Id~AI~~F 130 (289)
T 1r8j_A 112 GIHQLEQLPYQVDAALAEF 130 (289)
T ss_dssp CTTCGGGHHHHHHHHHHHH
T ss_pred CHhHHHHHHHHHHHHHHHH
Confidence 5556677777777776543
No 430
>3vzx_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; 1.54A {Bacillus subtilis} PDB: 3vzy_A* 3vzz_A* 3w00_A* 1viz_A
Probab=59.75 E-value=13 Score=28.83 Aligned_cols=58 Identities=14% Similarity=0.154 Sum_probs=0.0
Q ss_pred HHHHHHHhCCCCceEEEEccCC--CCCCHHHHHHHHhcCCCCcEEEEeccCCHHHHHHHHhCCcceEEe
Q 027234 13 IALDMLRTNKNGYDIVISDVHM--PDMDGFKLLELVGLEMDLPVIMMCAHGSKEVVMKGVTHDACDYLT 79 (226)
Q Consensus 13 eal~~l~~~~~~~DlVl~D~~m--p~~dG~~l~~~l~~~~~~pvI~ls~~~~~~~~~~a~~~ga~~yl~ 79 (226)
++++.+.+.. .|+|++--.. ...+-.++++.++. .++|+|+..+.. ..+..|||+|+.
T Consensus 22 ~~~~~~~~~G--tD~i~vGGs~gvt~~~~~~~v~~ik~-~~~Pvvlfp~~~------~~v~~gaD~~l~ 81 (228)
T 3vzx_A 22 EQLEILCESG--TDAVIIGGSDGVTEDNVLRMMSKVRR-FLVPCVLEVSAI------EAIVPGFDLYFI 81 (228)
T ss_dssp THHHHHHTSS--CSEEEECCCSCCCHHHHHHHHHHHTT-SSSCEEEECSCG------GGCCSCCSEEEE
T ss_pred HHHHHHHHcC--CCEEEECCcCCCCHHHHHHHHHHhhc-cCCCEEEeCCCH------HHccccCCEEEE
No 431
>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*
Probab=59.66 E-value=40 Score=29.28 Aligned_cols=71 Identities=11% Similarity=0.080 Sum_probs=48.4
Q ss_pred EECCHHHHHHHHHhCCCCceEEEEccCCCC-----------CCHHHHHHHH---hcCCCCcEEEEeccCCHHHHHHHHhC
Q 027234 7 KCNRAEIALDMLRTNKNGYDIVISDVHMPD-----------MDGFKLLELV---GLEMDLPVIMMCAHGSKEVVMKGVTH 72 (226)
Q Consensus 7 ~~~~~~eal~~l~~~~~~~DlVl~D~~mp~-----------~dG~~l~~~l---~~~~~~pvI~ls~~~~~~~~~~a~~~ 72 (226)
.+.+.+.|..+.... .|.|.+.+.-.. ...+.++..+ .....+|||.-.+-.+...+.+|+.+
T Consensus 304 ~v~t~e~a~~~~~aG---ad~i~vg~g~gsi~~~~~~~g~g~p~~~~l~~v~~~~~~~~iPVIa~GGI~~~~di~kala~ 380 (511)
T 3usb_A 304 NVATAEATKALIEAG---ANVVKVGIGPGSICTTRVVAGVGVPQLTAVYDCATEARKHGIPVIADGGIKYSGDMVKALAA 380 (511)
T ss_dssp EECSHHHHHHHHHHT---CSEEEECSSCSTTCCHHHHHCCCCCHHHHHHHHHHHHHTTTCCEEEESCCCSHHHHHHHHHT
T ss_pred eeccHHHHHHHHHhC---CCEEEECCCCccccccccccCCCCCcHHHHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHHh
Confidence 566777777776643 788876432211 2234444443 23356999988888899999999999
Q ss_pred CcceEEeC
Q 027234 73 DACDYLTK 80 (226)
Q Consensus 73 ga~~yl~K 80 (226)
||++...=
T Consensus 381 GA~~V~vG 388 (511)
T 3usb_A 381 GAHVVMLG 388 (511)
T ss_dssp TCSEEEES
T ss_pred Cchhheec
Confidence 99998753
No 432
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=59.61 E-value=3.9 Score=26.61 Aligned_cols=29 Identities=24% Similarity=0.317 Sum_probs=23.9
Q ss_pred HHHHhhCCCCCCHHHHHHHhhhhhhhhhcc
Q 027234 180 KILELMNIPGLTRENVASHLQKHRLYLSRL 209 (226)
Q Consensus 180 ~I~~~~~~~~lt~~~va~~l~~~r~~l~r~ 209 (226)
.|+..+ ...++..+||..+++++..++|.
T Consensus 35 ~Il~~L-~~~~~~~eLa~~l~is~~tv~~~ 63 (96)
T 1y0u_A 35 KILRML-DKGRSEEEIMQTLSLSKKQLDYH 63 (96)
T ss_dssp HHHHHH-HTTCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHH-cCCCCHHHHHHHHCcCHHHHHHH
Confidence 466766 66799999999999999987763
No 433
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=59.58 E-value=6.5 Score=27.90 Aligned_cols=47 Identities=13% Similarity=0.189 Sum_probs=34.3
Q ss_pred HHHHHHHHhCCCCCCchHHHHhhCCCCCCHHHHHHHhhhhhhhhhcc
Q 027234 163 QFVSAVKELGFDKAGPKKILELMNIPGLTRENVASHLQKHRLYLSRL 209 (226)
Q Consensus 163 ~Fi~~~~~~g~~~~~p~~I~~~~~~~~lt~~~va~~l~~~r~~l~r~ 209 (226)
.|-..+...|+....-..+..+...++++..+||..+++++..+.|+
T Consensus 38 ~~~~~l~~~~lt~~q~~vL~~l~~~~~~t~~eLa~~l~~~~~tvs~~ 84 (159)
T 3s2w_A 38 YIGKKIEPYGIGSGQFPFLMRLYREDGINQESLSDYLKIDKGTTARA 84 (159)
T ss_dssp HHHHHHGGGTCCTTTHHHHHHHHHSCSEEHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHH
Confidence 34444556677766655555555678899999999999999987663
No 434
>1zx4_A P1 PARB, plasmid partition PAR B protein, PARB; translation; HET: CIT; 2.98A {Enterobacteria phage P1} PDB: 2ntz_A
Probab=59.43 E-value=3.9 Score=30.87 Aligned_cols=23 Identities=13% Similarity=0.268 Sum_probs=20.6
Q ss_pred CCCCCHHHHHHHhhhhhhhhhcc
Q 027234 187 IPGLTRENVASHLQKHRLYLSRL 209 (226)
Q Consensus 187 ~~~lt~~~va~~l~~~r~~l~r~ 209 (226)
..|+|.++||.+||+||....|.
T Consensus 22 ~~g~tQ~eIA~~lGiSr~~VSR~ 44 (192)
T 1zx4_A 22 NDGMSQKDIAAKEGLSQAKVTRA 44 (192)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHH
T ss_pred HcCCCHHHHHHHhCcCHHHHHHH
Confidence 35899999999999999998884
No 435
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=59.12 E-value=4.2 Score=28.21 Aligned_cols=43 Identities=21% Similarity=0.359 Sum_probs=30.1
Q ss_pred HHHHhCCCCCCchHHHHhhCCCCCCHHHHHHHhhhhhhhhhcc
Q 027234 167 AVKELGFDKAGPKKILELMNIPGLTRENVASHLQKHRLYLSRL 209 (226)
Q Consensus 167 ~~~~~g~~~~~p~~I~~~~~~~~lt~~~va~~l~~~r~~l~r~ 209 (226)
.+...|+....-..+..+...+++|..++|.+++++++.+++.
T Consensus 21 ~~~~~~lt~~~~~iL~~l~~~~~~t~~~la~~l~~s~~~vs~~ 63 (144)
T 1lj9_A 21 EFKELSLTRGQYLYLVRVCENPGIIQEKIAELIKVDRTTAARA 63 (144)
T ss_dssp HTGGGTCTTTHHHHHHHHHHSTTEEHHHHHHHHTCCHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHCcCcCHHHHHHHHCCCHhHHHHH
Confidence 3445566544444454555567899999999999999987663
No 436
>1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A
Probab=58.99 E-value=26 Score=26.90 Aligned_cols=67 Identities=13% Similarity=0.083 Sum_probs=43.4
Q ss_pred CHHHHHHHHHhCCCCce-EEEEccCCCCCC---------HHHHHHHHhcCCCCcEEEEeccCCHHHHHHHHhCCcceEEe
Q 027234 10 RAEIALDMLRTNKNGYD-IVISDVHMPDMD---------GFKLLELVGLEMDLPVIMMCAHGSKEVVMKGVTHDACDYLT 79 (226)
Q Consensus 10 ~~~eal~~l~~~~~~~D-lVl~D~~mp~~d---------G~~l~~~l~~~~~~pvI~ls~~~~~~~~~~a~~~ga~~yl~ 79 (226)
+..+.++.+... .| +|.+ +..|+.. +++.++.++...++|+++-.+-...+.+.+++..||++++.
T Consensus 144 t~~e~~~~~~~~---~d~~i~~-~~~~G~~g~~~~~~~~~~~~i~~l~~~~~~pi~~~GGI~~~e~i~~~~~~Gad~viv 219 (248)
T 1geq_A 144 TPDERLKVIDDM---TTGFVYL-VSLYGTTGAREEIPKTAYDLLRRAKRICRNKVAVGFGVSKREHVVSLLKEGANGVVV 219 (248)
T ss_dssp CCHHHHHHHHHH---CSSEEEE-ECCC-------CCCHHHHHHHHHHHHHCSSCEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred CHHHHHHHHHhc---CCCeEEE-EECCccCCCCCCCChhHHHHHHHHHhhcCCCEEEEeecCCHHHHHHHHHcCCCEEEE
Confidence 456666665543 33 5533 3335432 35577777755578988777777768888888999999986
Q ss_pred C
Q 027234 80 K 80 (226)
Q Consensus 80 K 80 (226)
=
T Consensus 220 G 220 (248)
T 1geq_A 220 G 220 (248)
T ss_dssp C
T ss_pred c
Confidence 4
No 437
>3tqv_A Nicotinate-nucleotide pyrophosphorylase; glycosyltransferase, transferase; 2.62A {Francisella tularensis subsp}
Probab=58.98 E-value=41 Score=26.97 Aligned_cols=66 Identities=8% Similarity=-0.032 Sum_probs=44.8
Q ss_pred EEECCHHHHHHHHHhCCCCceEEEEccCCCCCCHHHHHHHHhcCCCCcEEEEeccCCHHHHHHHHhCCcceEE
Q 027234 6 TKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVGLEMDLPVIMMCAHGSKEVVMKGVTHDACDYL 78 (226)
Q Consensus 6 ~~~~~~~eal~~l~~~~~~~DlVl~D~~mp~~dG~~l~~~l~~~~~~pvI~ls~~~~~~~~~~a~~~ga~~yl 78 (226)
+.+.+.+|+.+.++. ++|+|.+|-.-| -++-+.++....-..+..|+.-+.+.+......|+|.+-
T Consensus 203 VEv~tl~ea~eAl~a---GaD~I~LDn~~~----~~l~~av~~~~~~v~ieaSGGIt~~~i~~~a~tGVD~Is 268 (287)
T 3tqv_A 203 VEVTNLDELNQAIAA---KADIVMLDNFSG----EDIDIAVSIARGKVALEVSGNIDRNSIVAIAKTGVDFIS 268 (287)
T ss_dssp EEESSHHHHHHHHHT---TCSEEEEESCCH----HHHHHHHHHHTTTCEEEEESSCCTTTHHHHHTTTCSEEE
T ss_pred EEeCCHHHHHHHHHc---CCCEEEEcCCCH----HHHHHHHHhhcCCceEEEECCCCHHHHHHHHHcCCCEEE
Confidence 478899999988875 389999996333 333333331112234568888888888888899987654
No 438
>2rre_A NVL2, putative uncharacterized protein; nucleolar localization signal, RNA binding, alternatively SP domain, nuclear protein; NMR {Mus musculus}
Probab=58.93 E-value=9.2 Score=24.28 Aligned_cols=42 Identities=17% Similarity=0.040 Sum_probs=32.2
Q ss_pred hHHHHHHHHHHhCCCCCCchHHHHhhCCCCCCHHHHHHHhhh-hh-hhhhccc
Q 027234 160 LHQQFVSAVKELGFDKAGPKKILELMNIPGLTRENVASHLQK-HR-LYLSRLS 210 (226)
Q Consensus 160 l~~~Fi~~~~~~g~~~~~p~~I~~~~~~~~lt~~~va~~l~~-~r-~~l~r~~ 210 (226)
.+.+.++.+++ ++.++-+...+.++.+|+.||. || .|=+|.+
T Consensus 13 ~D~~L~~RV~q---------yl~~n~~~~YvD~~~ma~~Lq~~Y~~eY~Rrk~ 56 (78)
T 2rre_A 13 VDRKLKQRVIQ---------YLSSNRCGKYVDTGILASDLQRLYSVDYGRRKR 56 (78)
T ss_dssp SSHHHHHHHHH---------HHHHCCCSSSCCHHHHHHHHHHHTTTTTCSSCH
T ss_pred ccHHHHHHHHH---------HHHhCCCCccccHHHHHHHHHHHhhhhcccccc
Confidence 35677777888 5777777778999999999976 87 7766554
No 439
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=58.81 E-value=5.9 Score=24.46 Aligned_cols=27 Identities=19% Similarity=0.363 Sum_probs=21.1
Q ss_pred HHHHhhCCCCCCHHHHHHHhhhhhhhhh
Q 027234 180 KILELMNIPGLTRENVASHLQKHRLYLS 207 (226)
Q Consensus 180 ~I~~~~~~~~lt~~~va~~l~~~r~~l~ 207 (226)
.|+..+ ..+++..+||..|++|...++
T Consensus 23 ~vl~l~-~~g~s~~eIA~~l~is~~tV~ 49 (79)
T 1x3u_A 23 QVLSAV-VAGLPNKSIAYDLDISPRTVE 49 (79)
T ss_dssp HHHHHH-TTTCCHHHHHHHTTSCHHHHH
T ss_pred HHHHHH-HcCCCHHHHHHHHCcCHHHHH
Confidence 355666 569999999999999877544
No 440
>3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A
Probab=58.56 E-value=19 Score=27.65 Aligned_cols=69 Identities=13% Similarity=0.155 Sum_probs=43.7
Q ss_pred ceEEEEccCCCCCCH-------HHHHHHHhcC-CCCcEEEEeccCCHHHHHHHHhCCcceEEe-----CCCCHHHHHHHH
Q 027234 25 YDIVISDVHMPDMDG-------FKLLELVGLE-MDLPVIMMCAHGSKEVVMKGVTHDACDYLT-----KPVRIEELKNIW 91 (226)
Q Consensus 25 ~DlVl~D~~mp~~dG-------~~l~~~l~~~-~~~pvI~ls~~~~~~~~~~a~~~ga~~yl~-----KP~~~~~L~~~l 91 (226)
+|.|++.-..|+..| ++-++.++.. ++.++ .+.+.-+.+....+.++||+.++. +.-++.+-...+
T Consensus 135 ~D~Vl~msv~pGf~Gq~f~~~~l~ki~~lr~~~~~~~I-~VdGGI~~~t~~~~~~aGAd~~VvGsaIf~a~dp~~~~~~l 213 (228)
T 3ovp_A 135 IDMALVMTVEPGFGGQKFMEDMMPKVHWLRTQFPSLDI-EVDGGVGPDTVHKCAEAGANMIVSGSAIMRSEDPRSVINLL 213 (228)
T ss_dssp CSEEEEESSCTTTCSCCCCGGGHHHHHHHHHHCTTCEE-EEESSCSTTTHHHHHHHTCCEEEESHHHHTCSCHHHHHHHH
T ss_pred CCeEEEeeecCCCCCcccCHHHHHHHHHHHHhcCCCCE-EEeCCcCHHHHHHHHHcCCCEEEEeHHHhCCCCHHHHHHHH
Confidence 788887666787665 3335555532 34554 466666788888999999998774 333555444444
Q ss_pred HHH
Q 027234 92 QHV 94 (226)
Q Consensus 92 ~~~ 94 (226)
+..
T Consensus 214 ~~~ 216 (228)
T 3ovp_A 214 RNV 216 (228)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 441
>2r0q_C Putative transposon TN552 DNA-invertase BIN3; site-specific recombinase, resolvase, DNA-binding protein, protein-DNA complex, DNA integration, DNA invertase, DNA recombination; 3.20A {Staphylococcus aureus}
Probab=58.20 E-value=4.4 Score=30.67 Aligned_cols=32 Identities=16% Similarity=0.315 Sum_probs=26.4
Q ss_pred HHHhhCCCCCCHHHHHHHhhhhhhhhhcccCCC
Q 027234 181 ILELMNIPGLTRENVASHLQKHRLYLSRLSGVS 213 (226)
Q Consensus 181 I~~~~~~~~lt~~~va~~l~~~r~~l~r~~~~~ 213 (226)
|.+.+. .|.+...||..|++|+..+||+.+..
T Consensus 168 i~~~~~-~G~s~~~Ia~~l~is~~tv~r~l~~~ 199 (209)
T 2r0q_C 168 VVEMLE-EGQAISKIAKEVNITRQTVYRIKHDN 199 (209)
T ss_dssp HHHHHH-TTCCHHHHHHHHTCCHHHHHHHHTTC
T ss_pred HHHHHH-cCCCHHHHHHHHCcCHHHHHHHHhcc
Confidence 666555 48999999999999999999976544
No 442
>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15
Probab=57.84 E-value=3 Score=30.93 Aligned_cols=31 Identities=16% Similarity=0.217 Sum_probs=23.8
Q ss_pred HHHhhCCCCCCHHHHHHHhhhhhhhhhcccC
Q 027234 181 ILELMNIPGLTRENVASHLQKHRLYLSRLSG 211 (226)
Q Consensus 181 I~~~~~~~~lt~~~va~~l~~~r~~l~r~~~ 211 (226)
|.+.+..-++|++++|..+++|+++++|+-+
T Consensus 16 l~~~r~~~gltq~~lA~~~gis~~~is~~e~ 46 (192)
T 1y9q_A 16 LKNLRKSRGLSLDATAQLTGVSKAMLGQIER 46 (192)
T ss_dssp HHHHHHHTTCCHHHHHHHHSSCHHHHHHHHT
T ss_pred HHHHHHHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 4444555689999999999999998887543
No 443
>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A
Probab=57.13 E-value=3.3 Score=30.82 Aligned_cols=30 Identities=10% Similarity=0.039 Sum_probs=18.6
Q ss_pred HHHhhCCCCCCHHHHHHHhhhhhhhhhccc
Q 027234 181 ILELMNIPGLTRENVASHLQKHRLYLSRLS 210 (226)
Q Consensus 181 I~~~~~~~~lt~~~va~~l~~~r~~l~r~~ 210 (226)
|.+.+...++|.+++|..+++|+++++++-
T Consensus 15 l~~~r~~~g~s~~~la~~~gis~~~ls~~e 44 (198)
T 2bnm_A 15 LKDRREQVKMDHAALASLLGETPETVAAWE 44 (198)
T ss_dssp HHHHHHHTTCCHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHCcCHHHHHHHH
Confidence 333333446777777777777777766643
No 444
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=57.06 E-value=3.7 Score=28.64 Aligned_cols=49 Identities=8% Similarity=0.028 Sum_probs=31.8
Q ss_pred HHHHHHHHHHhCCCCCCchHHHHhhCCCCCCHHHHHHHhhhhhhhhhcc
Q 027234 161 HQQFVSAVKELGFDKAGPKKILELMNIPGLTRENVASHLQKHRLYLSRL 209 (226)
Q Consensus 161 ~~~Fi~~~~~~g~~~~~p~~I~~~~~~~~lt~~~va~~l~~~r~~l~r~ 209 (226)
...|-..+...|+....-..+..+...+++|..+||.++++++..++|.
T Consensus 17 ~~~~~~~~~~~~lt~~q~~iL~~l~~~~~~t~~eLa~~l~~~~~tvs~~ 65 (145)
T 3g3z_A 17 CNVFDKWIGQQDLNYNLFAVLYTLATEGSRTQKHIGEKWSLPKQTVSGV 65 (145)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHH
Confidence 3344444555666433333344444566899999999999999987663
No 445
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=56.90 E-value=7.1 Score=27.46 Aligned_cols=47 Identities=13% Similarity=0.174 Sum_probs=31.6
Q ss_pred HHHHHHHHhCCCCCCchHHHHhhCCCCCCHHHHHHHhhhhhhhhhcc
Q 027234 163 QFVSAVKELGFDKAGPKKILELMNIPGLTRENVASHLQKHRLYLSRL 209 (226)
Q Consensus 163 ~Fi~~~~~~g~~~~~p~~I~~~~~~~~lt~~~va~~l~~~r~~l~r~ 209 (226)
.+-..+...|+....-..+.-+...++++..+||..+++++..+++.
T Consensus 31 ~~~~~l~~~~lt~~~~~iL~~l~~~~~~t~~ela~~l~i~~~tvs~~ 77 (155)
T 3cdh_A 31 QFHDHIRAQGLRVPEWRVLACLVDNDAMMITRLAKLSLMEQSRMTRI 77 (155)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHSSCSCBCHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHCCCcCHHHHHHHHCCCHHHHHHH
Confidence 33344556676543333444444567899999999999999977663
No 446
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=56.88 E-value=5.3 Score=25.77 Aligned_cols=29 Identities=10% Similarity=0.138 Sum_probs=21.9
Q ss_pred HHHHhhCCCCCCHHHHHHHhhhhhhhhhc
Q 027234 180 KILELMNIPGLTRENVASHLQKHRLYLSR 208 (226)
Q Consensus 180 ~I~~~~~~~~lt~~~va~~l~~~r~~l~r 208 (226)
.|+.+.-..+++..+||..|++|...+++
T Consensus 44 ~vl~l~~~~g~s~~eIA~~lgis~~tV~~ 72 (92)
T 3hug_A 44 AVIQRSYYRGWSTAQIATDLGIAEGTVKS 72 (92)
T ss_dssp HHHHHHHTSCCCHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHCcCHHHHHH
Confidence 35555446699999999999999886553
No 447
>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1
Probab=56.64 E-value=51 Score=28.31 Aligned_cols=70 Identities=14% Similarity=0.135 Sum_probs=47.1
Q ss_pred EECCHHHHHHHHHhCCCCceEEEEccCCC-----------CCCHHHHHHHHh---cCCCCcEEEEeccCCHHHHHHHHhC
Q 027234 7 KCNRAEIALDMLRTNKNGYDIVISDVHMP-----------DMDGFKLLELVG---LEMDLPVIMMCAHGSKEVVMKGVTH 72 (226)
Q Consensus 7 ~~~~~~eal~~l~~~~~~~DlVl~D~~mp-----------~~dG~~l~~~l~---~~~~~pvI~ls~~~~~~~~~~a~~~ 72 (226)
...+.++|..+.+ .++|.|.+...-. +...+..+..+. ....+|||.-.+-.+...+.+++.+
T Consensus 285 ~~~t~e~a~~l~~---~G~d~I~v~~~~G~~~~~~~~~~~g~p~~~~l~~v~~~~~~~~ipvia~GGI~~~~di~kala~ 361 (494)
T 1vrd_A 285 NVATPEGTEALIK---AGADAVKVGVGPGSICTTRVVAGVGVPQLTAVMECSEVARKYDVPIIADGGIRYSGDIVKALAA 361 (494)
T ss_dssp EECSHHHHHHHHH---TTCSEEEECSSCSTTCHHHHHHCCCCCHHHHHHHHHHHHHTTTCCEEEESCCCSHHHHHHHHHT
T ss_pred CcCCHHHHHHHHH---cCCCEEEEcCCCCccccccccCCCCccHHHHHHHHHHHHhhcCCCEEEECCcCCHHHHHHHHHc
Confidence 4667778765554 2389888744211 123344444442 2357999988888899999999999
Q ss_pred CcceEEe
Q 027234 73 DACDYLT 79 (226)
Q Consensus 73 ga~~yl~ 79 (226)
||+....
T Consensus 362 GAd~V~i 368 (494)
T 1vrd_A 362 GAESVMV 368 (494)
T ss_dssp TCSEEEE
T ss_pred CCCEEEE
Confidence 9988763
No 448
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=56.34 E-value=5.1 Score=26.06 Aligned_cols=29 Identities=24% Similarity=0.305 Sum_probs=24.1
Q ss_pred HHHHhhCCCCCCHHHHHHHhhhhhhhhhc
Q 027234 180 KILELMNIPGLTRENVASHLQKHRLYLSR 208 (226)
Q Consensus 180 ~I~~~~~~~~lt~~~va~~l~~~r~~l~r 208 (226)
.|+..+.....+..+||..++++++.+++
T Consensus 27 ~Il~~L~~~~~~~~ela~~l~is~~tvs~ 55 (98)
T 3jth_A 27 QILCMLHNQELSVGELCAKLQLSQSALSQ 55 (98)
T ss_dssp HHHHHTTTSCEEHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHhcCCCCHHHHHHHHCcCHHHHHH
Confidence 57777777789999999999999987665
No 449
>2qjg_A Putative aldolase MJ0400; beta-alpha barrel, lyase; HET: F2P; 2.60A {Methanocaldococcus jannaschii} PDB: 2qjh_A 2qji_A
Probab=56.30 E-value=68 Score=24.86 Aligned_cols=78 Identities=14% Similarity=0.098 Sum_probs=49.3
Q ss_pred HHHHHHHHhCCCCceEEEEccCCCCCCHHHHHHHHhcCCCCcEEEEeccCC--HHH----HHHHHhCCcceEEe-----C
Q 027234 12 EIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVGLEMDLPVIMMCAHGS--KEV----VMKGVTHDACDYLT-----K 80 (226)
Q Consensus 12 ~eal~~l~~~~~~~DlVl~D~~mp~~dG~~l~~~l~~~~~~pvI~ls~~~~--~~~----~~~a~~~ga~~yl~-----K 80 (226)
.++.+...+. ++|+|.+.. | -|++.++.+.....+|++...+-.. .+. ...++..|+++... +
T Consensus 169 ~~~a~~a~~~--Gad~i~~~~--~--~~~~~l~~i~~~~~ipvva~GGi~~~~~~~~~~~~~~~~~~Ga~gv~vg~~i~~ 242 (273)
T 2qjg_A 169 AHAARLGAEL--GADIVKTSY--T--GDIDSFRDVVKGCPAPVVVAGGPKTNTDEEFLQMIKDAMEAGAAGVAVGRNIFQ 242 (273)
T ss_dssp HHHHHHHHHT--TCSEEEECC--C--SSHHHHHHHHHHCSSCEEEECCSCCSSHHHHHHHHHHHHHHTCSEEECCHHHHT
T ss_pred HHHHHHHHHc--CCCEEEECC--C--CCHHHHHHHHHhCCCCEEEEeCCCCCCHHHHHHHHHHHHHcCCcEEEeeHHhhC
Confidence 3443444453 389988874 2 4688888887556799998877663 444 66677899998763 3
Q ss_pred CCCHHHHHHHHHHHH
Q 027234 81 PVRIEELKNIWQHVV 95 (226)
Q Consensus 81 P~~~~~L~~~l~~~~ 95 (226)
.-++......+...+
T Consensus 243 ~~~~~~~~~~l~~~~ 257 (273)
T 2qjg_A 243 HDDVVGITRAVCKIV 257 (273)
T ss_dssp SSSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 334544444444444
No 450
>3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A*
Probab=56.30 E-value=43 Score=26.48 Aligned_cols=55 Identities=15% Similarity=0.109 Sum_probs=41.0
Q ss_pred HHHHHHHhcCCCCcEEEEeccCCHHHHHHHHhCCcceEEe--CCCCHHHHHHHHHHH
Q 027234 40 FKLLELVGLEMDLPVIMMCAHGSKEVVMKGVTHDACDYLT--KPVRIEELKNIWQHV 94 (226)
Q Consensus 40 ~~l~~~l~~~~~~pvI~ls~~~~~~~~~~a~~~ga~~yl~--KP~~~~~L~~~l~~~ 94 (226)
++.++.++...++||+.--..-+...+..+...||++.+. .-++.+++...+...
T Consensus 102 ~~~l~~ir~~v~lPvl~kdfiid~~qv~~A~~~GAD~VlLi~a~l~~~~l~~l~~~a 158 (272)
T 3qja_A 102 LDDLDAVRASVSIPVLRKDFVVQPYQIHEARAHGADMLLLIVAALEQSVLVSMLDRT 158 (272)
T ss_dssp HHHHHHHHHHCSSCEEEESCCCSHHHHHHHHHTTCSEEEEEGGGSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCEEECccccCHHHHHHHHHcCCCEEEEecccCCHHHHHHHHHHH
Confidence 7888888877789998655445555688899999999986 556667776665554
No 451
>1ujp_A Tryptophan synthase alpha chain; riken structural genomics/P initiative, RSGI, structural genomics, lyase; HET: CIT; 1.34A {Thermus thermophilus} SCOP: c.1.2.4 PDB: 1wxj_A*
Probab=56.30 E-value=6.6 Score=31.24 Aligned_cols=57 Identities=12% Similarity=0.095 Sum_probs=0.0
Q ss_pred HHHHHHHhcCCCCcEEE------EeccCCHHHHHHHHhCCcceEEeCCCCHHHHHHHHHHHHH
Q 027234 40 FKLLELVGLEMDLPVIM------MCAHGSKEVVMKGVTHDACDYLTKPVRIEELKNIWQHVVR 96 (226)
Q Consensus 40 ~~l~~~l~~~~~~pvI~------ls~~~~~~~~~~a~~~ga~~yl~KP~~~~~L~~~l~~~~~ 96 (226)
+++++.++...++|+++ +-.+........+...|+++++.-.+..+++...+..+..
T Consensus 80 ~~~v~~ir~~~~~Pii~m~y~n~v~~~g~~~f~~~~~~aG~dGviv~Dl~~ee~~~~~~~~~~ 142 (271)
T 1ujp_A 80 LELVREVRALTEKPLFLMTYLNPVLAWGPERFFGLFKQAGATGVILPDLPPDEDPGLVRLAQE 142 (271)
T ss_dssp HHHHHHHHHHCCSCEEEECCHHHHHHHCHHHHHHHHHHHTCCEEECTTCCGGGCHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCEEEEecCcHHHHhhHHHHHHHHHHcCCCEEEecCCCHHHHHHHHHHHHH
No 452
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=56.29 E-value=5.8 Score=27.52 Aligned_cols=47 Identities=11% Similarity=0.210 Sum_probs=28.4
Q ss_pred HHHHHHHH--hCCCCCCchHHHHhhCCCCCCHHHHHHHhhhhhhhhhcc
Q 027234 163 QFVSAVKE--LGFDKAGPKKILELMNIPGLTRENVASHLQKHRLYLSRL 209 (226)
Q Consensus 163 ~Fi~~~~~--~g~~~~~p~~I~~~~~~~~lt~~~va~~l~~~r~~l~r~ 209 (226)
.|-..+.. .|+....-..+..+...+++|..+||.+++++++.+.|.
T Consensus 23 ~~~~~l~~~~~~lt~~~~~vL~~l~~~~~~t~~eLa~~l~~~~~tvs~~ 71 (142)
T 3ech_A 23 RIQSELDCQRLDLTPPDVHVLKLIDEQRGLNLQDLGRQMCRDKALITRK 71 (142)
T ss_dssp HHHHHHHHTTCCCCHHHHHHHHHHHHTTTCCHHHHHHHHC---CHHHHH
T ss_pred HHHHHHhhccCCCCHHHHHHHHHHHhCCCcCHHHHHHHhCCCHHHHHHH
Confidence 33344444 555544444444455567899999999999999877653
No 453
>1vs1_A 3-deoxy-7-phosphoheptulonate synthase; (beta/alpha)8 barrel, transferase; HET: PEP; 2.30A {Aeropyrum pernix}
Probab=56.28 E-value=26 Score=27.88 Aligned_cols=85 Identities=12% Similarity=0.161 Sum_probs=53.4
Q ss_pred CHHHHHHHHHhCCCCceEEEEc-c--CCCC--CC--HHHHHHHHhcCCCCcEEEEeccCC------HHHHHHHHhCCcce
Q 027234 10 RAEIALDMLRTNKNGYDIVISD-V--HMPD--MD--GFKLLELVGLEMDLPVIMMCAHGS------KEVVMKGVTHDACD 76 (226)
Q Consensus 10 ~~~eal~~l~~~~~~~DlVl~D-~--~mp~--~d--G~~l~~~l~~~~~~pvI~ls~~~~------~~~~~~a~~~ga~~ 76 (226)
+...|++.+... +.++++|+. - .-|. .+ -+..+..+++..++||++.+++.. ......|...||+|
T Consensus 160 ei~~Ave~i~~~-Gn~~i~L~~Rg~~~yp~y~~~~vdl~~i~~lk~~~~lpVi~dssH~~g~~~~~~~~~~aAva~Ga~G 238 (276)
T 1vs1_A 160 ELLAAAEYILLE-GNWQVVLVERGIRTFEPSTRFTLDVAAVAVLKEATHLPVIVDPSHPAGRRSLVPALAKAGLAAGADG 238 (276)
T ss_dssp HHHHHHHHHHHT-TCCCEEEEECCBCCSCCSSSSBCBHHHHHHHHHHBSSCEEECCHHHHCSGGGHHHHHHHHHHTTCSE
T ss_pred HHHHHHHHHHHc-CCCeEEEEeCCcCCCCCcCcchhCHHHHHHHHHHhCCCEEEeCCCCCCccchHHHHHHHHHHcCCCE
Confidence 345577777654 347999987 2 1232 11 233344555545789888787653 35567788899997
Q ss_pred EE-eC-------------CCCHHHHHHHHHHHH
Q 027234 77 YL-TK-------------PVRIEELKNIWQHVV 95 (226)
Q Consensus 77 yl-~K-------------P~~~~~L~~~l~~~~ 95 (226)
.+ .| .+.+++|...++.+.
T Consensus 239 l~IE~H~~~d~a~~D~~~sl~p~~~~~lv~~i~ 271 (276)
T 1vs1_A 239 LIVEVHPNPEEALSDAKQQLTPGEFARLMGELR 271 (276)
T ss_dssp EEEEBCSSGGGCSSCGGGCBCHHHHHHHHHHHH
T ss_pred EEEEecCCcccCCCchhcCCCHHHHHHHHHHHH
Confidence 65 33 257888888777653
No 454
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=56.17 E-value=5.5 Score=23.51 Aligned_cols=23 Identities=17% Similarity=0.070 Sum_probs=20.1
Q ss_pred CCCCCHHHHHHHh-----hhhhhhhhcc
Q 027234 187 IPGLTRENVASHL-----QKHRLYLSRL 209 (226)
Q Consensus 187 ~~~lt~~~va~~l-----~~~r~~l~r~ 209 (226)
...+|.++++.+| ++|++.+||-
T Consensus 17 ~~~~t~~el~~~l~~~~~~vs~~Tv~R~ 44 (64)
T 2p5k_A 17 NEIETQDELVDMLKQDGYKVTQATVSRD 44 (64)
T ss_dssp SCCCSHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhCCCcCHHHHHHH
Confidence 4579999999999 9999998884
No 455
>3tqv_A Nicotinate-nucleotide pyrophosphorylase; glycosyltransferase, transferase; 2.62A {Francisella tularensis subsp}
Probab=56.16 E-value=34 Score=27.43 Aligned_cols=67 Identities=12% Similarity=0.100 Sum_probs=43.6
Q ss_pred eEEEE-ccCCCCCCHH-HHHHHHh-cCCCCcEEEEeccCCHHHHHHHHhCCcceEEeCCCCHHHHHHHHHHH
Q 027234 26 DIVIS-DVHMPDMDGF-KLLELVG-LEMDLPVIMMCAHGSKEVVMKGVTHDACDYLTKPVRIEELKNIWQHV 94 (226)
Q Consensus 26 DlVl~-D~~mp~~dG~-~l~~~l~-~~~~~pvI~ls~~~~~~~~~~a~~~ga~~yl~KP~~~~~L~~~l~~~ 94 (226)
|.|++ |-+.--..|+ +.++..+ ..+..||.+ ..++.+.+.+|+..|++......+++++++..++.+
T Consensus 170 d~vlikdNHi~~~G~i~~Av~~ar~~~~~~~IeV--Ev~tl~ea~eAl~aGaD~I~LDn~~~~~l~~av~~~ 239 (287)
T 3tqv_A 170 DAYLIKENHIRSAGGIAKAVTKAKKLDSNKVVEV--EVTNLDELNQAIAAKADIVMLDNFSGEDIDIAVSIA 239 (287)
T ss_dssp SSEEECTTTC----CHHHHHHHHHHHCTTSCEEE--EESSHHHHHHHHHTTCSEEEEESCCHHHHHHHHHHH
T ss_pred cEEEEeHHHHHHhCCHHHHHHHHHhhCCCCcEEE--EeCCHHHHHHHHHcCCCEEEEcCCCHHHHHHHHHhh
Confidence 44444 4333322333 3445554 345677665 334568889999999999999999999999888754
No 456
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=56.15 E-value=4 Score=26.74 Aligned_cols=25 Identities=24% Similarity=0.351 Sum_probs=20.0
Q ss_pred HHHHhhCCCCCCHHHHHHHhhhhhhh
Q 027234 180 KILELMNIPGLTRENVASHLQKHRLY 205 (226)
Q Consensus 180 ~I~~~~~~~~lt~~~va~~l~~~r~~ 205 (226)
.|+.++ ..|+|..+||..|++|...
T Consensus 34 ~vl~l~-~~g~s~~eIA~~l~is~~t 58 (95)
T 3c57_A 34 TLLGLL-SEGLTNKQIADRMFLAEKT 58 (95)
T ss_dssp HHHHHH-HTTCCHHHHHHHHTCCHHH
T ss_pred HHHHHH-HcCCCHHHHHHHHCcCHHH
Confidence 455666 6699999999999998774
No 457
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=55.73 E-value=4.6 Score=28.31 Aligned_cols=46 Identities=24% Similarity=0.272 Sum_probs=30.6
Q ss_pred HHHHHHHHhCCCCCCchHHHHhhCCCCCCHHHHHHHhhhhhhhhhc
Q 027234 163 QFVSAVKELGFDKAGPKKILELMNIPGLTRENVASHLQKHRLYLSR 208 (226)
Q Consensus 163 ~Fi~~~~~~g~~~~~p~~I~~~~~~~~lt~~~va~~l~~~r~~l~r 208 (226)
.+-..+...|+....-..+..+...+++|..+||.++++++..+++
T Consensus 28 ~~~~~~~~~~lt~~~~~iL~~l~~~~~~t~~ela~~l~~~~~~vs~ 73 (152)
T 3bj6_A 28 AVERGTLREGVTVGQRAILEGLSLTPGATAPQLGAALQMKRQYISR 73 (152)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHSTTEEHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHhCCCCCHHHHHHHHCCCHHHHHH
Confidence 3333455566654333344444456789999999999999997665
No 458
>3bdn_A Lambda repressor; repressor, allostery; HET: DNA; 3.91A {Enterobacteria phage lambda}
Probab=55.54 E-value=6.1 Score=30.25 Aligned_cols=32 Identities=22% Similarity=0.143 Sum_probs=26.7
Q ss_pred HHHHhhCCCCCCHHHHHHHhhhhhhhhhcccC
Q 027234 180 KILELMNIPGLTRENVASHLQKHRLYLSRLSG 211 (226)
Q Consensus 180 ~I~~~~~~~~lt~~~va~~l~~~r~~l~r~~~ 211 (226)
.|.+.+...++|..++|.++++++++++++.+
T Consensus 21 ~l~~~r~~~g~t~~~lA~~~gis~~~i~~~~~ 52 (236)
T 3bdn_A 21 IYEKKKNELGLSQESVADKMGMGQSGVGALFN 52 (236)
T ss_dssp HHHHHTTTTTCCSHHHHHHHTSCHHHHHHHTT
T ss_pred HHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 46677777899999999999999998887643
No 459
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=54.80 E-value=3.9 Score=28.46 Aligned_cols=46 Identities=15% Similarity=0.178 Sum_probs=30.7
Q ss_pred HHHHHHHhCCCCCCchHHHHhhCCCCCCHHHHHHHhhhhhhhhhcc
Q 027234 164 FVSAVKELGFDKAGPKKILELMNIPGLTRENVASHLQKHRLYLSRL 209 (226)
Q Consensus 164 Fi~~~~~~g~~~~~p~~I~~~~~~~~lt~~~va~~l~~~r~~l~r~ 209 (226)
+-..+...|+....-..+..+...++.|..+||.+++++++.+.|+
T Consensus 25 ~~~~~~~~glt~~q~~vL~~l~~~~~~t~~eLa~~l~~~~~tvs~~ 70 (140)
T 3hsr_A 25 YTNYLKEYDLTYTGYIVLMAIENDEKLNIKKLGERVFLDSGTLTPL 70 (140)
T ss_dssp HHHHHGGGTCCHHHHHHHHHSCTTCEEEHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHcCCcCHHHHHHHHCCChhhHHHH
Confidence 3333445565543333444455577899999999999999987653
No 460
>2yzr_A Pyridoxal biosynthesis lyase PDXS; redox protein, pyridoxal phosphate, structural genomi NPPSFA; 2.30A {Methanocaldococcus jannaschii}
Probab=54.80 E-value=39 Score=27.66 Aligned_cols=59 Identities=12% Similarity=-0.036 Sum_probs=42.5
Q ss_pred HHHHHHHHhcCCCCcEE--EEeccCCHHHHHHHHhCCcceEEe-----CCCCHHHHHHHHHHHHHH
Q 027234 39 GFKLLELVGLEMDLPVI--MMCAHGSKEVVMKGVTHDACDYLT-----KPVRIEELKNIWQHVVRK 97 (226)
Q Consensus 39 G~~l~~~l~~~~~~pvI--~ls~~~~~~~~~~a~~~ga~~yl~-----KP~~~~~L~~~l~~~~~~ 97 (226)
++++++.+++...+||| ..++-...+.+...++.|+++++. +.-++......+...+..
T Consensus 228 ~lell~~i~~~~~IPVV~VAeGGI~Tpeda~~~l~~GaDgV~VGsaI~~a~dP~~aar~l~~ai~~ 293 (330)
T 2yzr_A 228 LYEVLLEVKKLGRLPVVNFAAGGVATPADAALMMQLGSDGVFVGSGIFKSENPLERARAIVEATYN 293 (330)
T ss_dssp HHHHHHHHHHHTSCSSEEEECSCCCSHHHHHHHHHTTCSCEEESHHHHTSSCHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHhCCCCeEEEEECCCCCHHHHHHHHHcCcCEEeeHHHHhcCCCHHHHHHHHHHHHHh
Confidence 55888888766678986 344544689999999999999984 345666666666655543
No 461
>1zco_A 2-dehydro-3-deoxyphosphoheptonate aldolase; arabino-heptulosonate, synthase, shikimate, DAHP, DAH7P, DAH DAH7PS, lyase; HET: PEP; 2.25A {Pyrococcus furiosus}
Probab=54.71 E-value=44 Score=26.27 Aligned_cols=80 Identities=9% Similarity=0.184 Sum_probs=51.0
Q ss_pred HHHHHHHHhCCCCceEEEEccC------CC----CCCHHHHHHHHhcCCCCcEEEEeccCCH------HHHHHHHhCCcc
Q 027234 12 EIALDMLRTNKNGYDIVISDVH------MP----DMDGFKLLELVGLEMDLPVIMMCAHGSK------EVVMKGVTHDAC 75 (226)
Q Consensus 12 ~eal~~l~~~~~~~DlVl~D~~------mp----~~dG~~l~~~l~~~~~~pvI~ls~~~~~------~~~~~a~~~ga~ 75 (226)
..|.+.+... +.++++|+.-. -| ++..+.. +++.+++|||+.+++... .....|...||+
T Consensus 147 ~~Av~~i~~~-Gn~~i~L~~RG~~~~~~y~~~~v~L~ai~~---lk~~~~~pVi~d~sH~~g~~~~v~~~~~aAva~Ga~ 222 (262)
T 1zco_A 147 LYSAEYIMAQ-GNENVILCERGIRTFETATRFTLDISAVPV---VKELSHLPIIVDPSHPAGRRSLVIPLAKAAYAIGAD 222 (262)
T ss_dssp HHHHHHHHTT-TCCCEEEEECCBCCSCCSSSSBCCTTHHHH---HHHHBSSCEEECSSTTTCSGGGHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHC-CCCeEEEEECCCCCCCCcChhhcCHHHHHH---HHhhhCCCEEEEcCCCCCccchHHHHHHHHHHcCCC
Confidence 4455666654 34788888721 11 2334444 444457899898888643 446668899999
Q ss_pred eEEe-C-------------CCCHHHHHHHHHHHH
Q 027234 76 DYLT-K-------------PVRIEELKNIWQHVV 95 (226)
Q Consensus 76 ~yl~-K-------------P~~~~~L~~~l~~~~ 95 (226)
|.+. | .+.+++|...++.+.
T Consensus 223 Gl~iE~H~~~d~al~D~~~sl~p~~~~~l~~~i~ 256 (262)
T 1zco_A 223 GIMVEVHPEPEKALSDSQQQLTFDDFLQLLKELE 256 (262)
T ss_dssp EEEEEBCSSGGGCSSCTTTCBCHHHHHHHHHHHH
T ss_pred EEEEEecCCccccCChhhcCCCHHHHHHHHHHHH
Confidence 8663 3 267888888877664
No 462
>3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0
Probab=54.52 E-value=78 Score=25.02 Aligned_cols=75 Identities=8% Similarity=0.083 Sum_probs=50.4
Q ss_pred CCcE-EEEECCHHHHHHHHHhCCCCceEEEEccCCC---CCCHHHHHHHHh-cC-CCCcEEEEeccCCHHHHHHHHhCCc
Q 027234 1 MGFS-VTKCNRAEIALDMLRTNKNGYDIVISDVHMP---DMDGFKLLELVG-LE-MDLPVIMMCAHGSKEVVMKGVTHDA 74 (226)
Q Consensus 1 lg~~-V~~~~~~~eal~~l~~~~~~~DlVl~D~~mp---~~dG~~l~~~l~-~~-~~~pvI~ls~~~~~~~~~~a~~~ga 74 (226)
+|.. ++.+.+.+|+...+. . ++|+|=+.-.-. ..| ++....+. .- .++|+|.-++-...+.+.++...|+
T Consensus 168 lGl~~lvevh~~eEl~~A~~-~--ga~iIGinnr~l~t~~~d-l~~~~~L~~~ip~~~~vIaesGI~t~edv~~l~~~Ga 243 (272)
T 3tsm_A 168 LGMDALIEVHDEAEMERALK-L--SSRLLGVNNRNLRSFEVN-LAVSERLAKMAPSDRLLVGESGIFTHEDCLRLEKSGI 243 (272)
T ss_dssp TTCEEEEEECSHHHHHHHTT-S--CCSEEEEECBCTTTCCBC-THHHHHHHHHSCTTSEEEEESSCCSHHHHHHHHTTTC
T ss_pred cCCeEEEEeCCHHHHHHHHh-c--CCCEEEECCCCCccCCCC-hHHHHHHHHhCCCCCcEEEECCCCCHHHHHHHHHcCC
Confidence 3555 346788888765554 2 378876553221 112 34444443 22 3688999999999999999999999
Q ss_pred ceEEe
Q 027234 75 CDYLT 79 (226)
Q Consensus 75 ~~yl~ 79 (226)
+++|.
T Consensus 244 ~gvLV 248 (272)
T 3tsm_A 244 GTFLI 248 (272)
T ss_dssp CEEEE
T ss_pred CEEEE
Confidence 99995
No 463
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=54.17 E-value=7 Score=27.72 Aligned_cols=41 Identities=20% Similarity=0.236 Sum_probs=29.0
Q ss_pred HHhCCCCCCchHHHHhhCCCCCCHHHHHHHhhhhhhhhhcc
Q 027234 169 KELGFDKAGPKKILELMNIPGLTRENVASHLQKHRLYLSRL 209 (226)
Q Consensus 169 ~~~g~~~~~p~~I~~~~~~~~lt~~~va~~l~~~r~~l~r~ 209 (226)
...|+....-..+..+...++++..+||..+++++..+++.
T Consensus 43 ~~~~lt~~~~~iL~~l~~~~~~t~~ela~~l~is~~tvs~~ 83 (162)
T 2fa5_A 43 DRYGMAIPEWRVITILALYPGSSASEVSDRTAMDKVAVSRA 83 (162)
T ss_dssp HHHCCCHHHHHHHHHHHHSTTCCHHHHHHHHTCCHHHHHHH
T ss_pred HhcCCCHHHHHHHHHHHhCCCCCHHHHHHHHCCCHHHHHHH
Confidence 55666544444444444567899999999999999977653
No 464
>3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum}
Probab=53.98 E-value=48 Score=27.40 Aligned_cols=65 Identities=14% Similarity=0.104 Sum_probs=43.3
Q ss_pred HHHHHHHHhCCCCceEEEEccCCCCCCH-HHHHHHHhcCCCCcEEEEeccCCHHHHHHHHhCCcceEEe
Q 027234 12 EIALDMLRTNKNGYDIVISDVHMPDMDG-FKLLELVGLEMDLPVIMMCAHGSKEVVMKGVTHDACDYLT 79 (226)
Q Consensus 12 ~eal~~l~~~~~~~DlVl~D~~mp~~dG-~~l~~~l~~~~~~pvI~ls~~~~~~~~~~a~~~ga~~yl~ 79 (226)
.+.++.+.+.. +|+|.+|........ .+.++.++...++|||+- .....+.+..+.+.||+....
T Consensus 107 ~e~a~~l~eaG--ad~I~ld~a~G~~~~~~~~i~~i~~~~~~~Vivg-~v~t~e~A~~l~~aGaD~I~V 172 (361)
T 3khj_A 107 IERAKLLVEAG--VDVIVLDSAHGHSLNIIRTLKEIKSKMNIDVIVG-NVVTEEATKELIENGADGIKV 172 (361)
T ss_dssp HHHHHHHHHTT--CSEEEECCSCCSBHHHHHHHHHHHHHCCCEEEEE-EECSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHcC--cCeEEEeCCCCCcHHHHHHHHHHHHhcCCcEEEc-cCCCHHHHHHHHHcCcCEEEE
Confidence 44444444433 899998876543333 466777765557888752 335678889999999988775
No 465
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=53.88 E-value=2.6 Score=27.66 Aligned_cols=30 Identities=13% Similarity=0.221 Sum_probs=23.2
Q ss_pred HHHHhhC-CCCCCHHHHHHHhhhhhhhhhcc
Q 027234 180 KILELMN-IPGLTRENVASHLQKHRLYLSRL 209 (226)
Q Consensus 180 ~I~~~~~-~~~lt~~~va~~l~~~r~~l~r~ 209 (226)
.|...+. .+++|..+||..++++++.++|.
T Consensus 26 ~l~~l~~~~~~~t~~ela~~l~is~~tv~~~ 56 (109)
T 2d1h_A 26 VLLKMVEIEKPITSEELADIFKLSKTTVENS 56 (109)
T ss_dssp HHHHHHHHCSCEEHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHcCCCCCHHHHHHHHCcCHHHHHHH
Confidence 3444444 66899999999999999987764
No 466
>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii}
Probab=53.85 E-value=2.7 Score=30.83 Aligned_cols=23 Identities=26% Similarity=0.183 Sum_probs=0.0
Q ss_pred CCCHHHHHHHhhhhhhhhhcccC
Q 027234 189 GLTRENVASHLQKHRLYLSRLSG 211 (226)
Q Consensus 189 ~lt~~~va~~l~~~r~~l~r~~~ 211 (226)
.+|+++||+.||++|..++|+.+
T Consensus 168 ~~t~~~iA~~lG~sretlsR~l~ 190 (194)
T 3dn7_A 168 RVPQYLLASYLGFTPEYLSEIRK 190 (194)
T ss_dssp -----------------------
T ss_pred HCCHHHHHHHhCCCHHHHHHHHH
Confidence 68999999999999999999754
No 467
>1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A
Probab=53.76 E-value=17 Score=28.32 Aligned_cols=42 Identities=17% Similarity=0.014 Sum_probs=34.8
Q ss_pred HHHHHHHHhcCCCCcEEEEeccCCHHHHHHHHhCCcceEEeC
Q 027234 39 GFKLLELVGLEMDLPVIMMCAHGSKEVVMKGVTHDACDYLTK 80 (226)
Q Consensus 39 G~~l~~~l~~~~~~pvI~ls~~~~~~~~~~a~~~ga~~yl~K 80 (226)
..++++.++...++||++-.+-.+.+.+..++..||++++.=
T Consensus 189 ~~~~i~~v~~~~~~pI~vgGGI~~~e~~~~~~~~GAdgvvVG 230 (262)
T 1rd5_A 189 VESLIQEVKKVTNKPVAVGFGISKPEHVKQIAQWGADGVIIG 230 (262)
T ss_dssp HHHHHHHHHHHCSSCEEEESCCCSHHHHHHHHHTTCSEEEEC
T ss_pred HHHHHHHHHhhcCCeEEEECCcCCHHHHHHHHHcCCCEEEEC
Confidence 556778887666899998888777999999999999999854
No 468
>3lfp_A CSP231I C protein; transcriptional regulator, DNA binding protein, helix-turn-H restriction-modification, transcription; 2.00A {Citrobacter SP} PDB: 3lis_A
Probab=53.73 E-value=2.9 Score=27.36 Aligned_cols=29 Identities=7% Similarity=0.119 Sum_probs=21.0
Q ss_pred HHHhhCCCCCCHHHHHHHhhhhhhh----hhcc
Q 027234 181 ILELMNIPGLTRENVASHLQKHRLY----LSRL 209 (226)
Q Consensus 181 I~~~~~~~~lt~~~va~~l~~~r~~----l~r~ 209 (226)
|.+.+..-++|..++|..+++++++ ++++
T Consensus 6 lk~~R~~~glsq~~lA~~~gis~~~~~~~is~~ 38 (98)
T 3lfp_A 6 LKDARLRAGISQEKLGVLAGIDEASASARMNQY 38 (98)
T ss_dssp HHHHHHHHTCCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHhCCCcchhhhHHHHH
Confidence 4444444588888888888888888 6664
No 469
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=53.62 E-value=6.3 Score=27.13 Aligned_cols=46 Identities=13% Similarity=0.035 Sum_probs=28.9
Q ss_pred HHHHHHHhCCCCCCchHHHHhhCCC--CCCHHHHHHHhhhhhhhhhcc
Q 027234 164 FVSAVKELGFDKAGPKKILELMNIP--GLTRENVASHLQKHRLYLSRL 209 (226)
Q Consensus 164 Fi~~~~~~g~~~~~p~~I~~~~~~~--~lt~~~va~~l~~~r~~l~r~ 209 (226)
+-..+...|+....-..+..+...+ +++..++|.++++++..+++.
T Consensus 23 ~~~~~~~~~lt~~~~~iL~~l~~~~~~~~~~~ela~~l~~~~~tvs~~ 70 (141)
T 3bro_A 23 FDIFAKKYDLTGTQMTIIDYLSRNKNKEVLQRDLESEFSIKSSTATVL 70 (141)
T ss_dssp HHHHHHTTTCCHHHHHHHHHHHHTTTSCCBHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHCCCCCcCHHHHHHHHCCCcchHHHH
Confidence 3333445555433333343444455 799999999999999976653
No 470
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=53.48 E-value=7.1 Score=27.84 Aligned_cols=43 Identities=12% Similarity=0.101 Sum_probs=29.2
Q ss_pred HHHHhCCCCCCchHHHHhhCCCCCCHHHHHHHhhhhhhhhhcc
Q 027234 167 AVKELGFDKAGPKKILELMNIPGLTRENVASHLQKHRLYLSRL 209 (226)
Q Consensus 167 ~~~~~g~~~~~p~~I~~~~~~~~lt~~~va~~l~~~r~~l~r~ 209 (226)
.+...|+....-..+.-+...+++|..+||.++++++..+.|+
T Consensus 38 ~l~~~glt~~q~~iL~~l~~~~~~t~~eLa~~l~~~~~tvs~~ 80 (162)
T 3k0l_A 38 HLSALEISLPQFTALSVLAAKPNLSNAKLAERSFIKPQSANKI 80 (162)
T ss_dssp HHHTTTCCHHHHHHHHHHHHCTTCCHHHHHHHHTSCGGGHHHH
T ss_pred HhhhcCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHH
Confidence 3445565543333444445567899999999999999987663
No 471
>3l0g_A Nicotinate-nucleotide pyrophosphorylase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.05A {Ehrlichia chaffeensis}
Probab=53.18 E-value=41 Score=27.14 Aligned_cols=51 Identities=14% Similarity=0.151 Sum_probs=39.4
Q ss_pred HHHHHh-cCCCCcEEEEeccCCHHHHHHHHhCCcceEEeCCCCHHHHHHHHHHH
Q 027234 42 LLELVG-LEMDLPVIMMCAHGSKEVVMKGVTHDACDYLTKPVRIEELKNIWQHV 94 (226)
Q Consensus 42 l~~~l~-~~~~~pvI~ls~~~~~~~~~~a~~~ga~~yl~KP~~~~~L~~~l~~~ 94 (226)
.++..+ ..+..||.+-. ++.+.+.+|+..|++..+.--+++++++.+++.+
T Consensus 197 Av~~ar~~~p~~kIeVEv--~tl~e~~eAl~aGaDiImLDn~s~~~l~~av~~~ 248 (300)
T 3l0g_A 197 AIQRLRKNLKNEYIAIEC--DNISQVEESLSNNVDMILLDNMSISEIKKAVDIV 248 (300)
T ss_dssp HHHHHHHHSSSCCEEEEE--SSHHHHHHHHHTTCSEEEEESCCHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCEEEEE--CCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHhh
Confidence 344554 34667777644 3568899999999999999999999999988764
No 472
>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*
Probab=53.10 E-value=38 Score=29.44 Aligned_cols=67 Identities=16% Similarity=0.110 Sum_probs=46.9
Q ss_pred CHHHHHHHHHhCCCCceEEEEccCCCCCCH-HHHHHHHhcC-CCCcEEEEeccCCHHHHHHHHhCCcceEEe
Q 027234 10 RAEIALDMLRTNKNGYDIVISDVHMPDMDG-FKLLELVGLE-MDLPVIMMCAHGSKEVVMKGVTHDACDYLT 79 (226)
Q Consensus 10 ~~~eal~~l~~~~~~~DlVl~D~~mp~~dG-~~l~~~l~~~-~~~pvI~ls~~~~~~~~~~a~~~ga~~yl~ 79 (226)
+..+.++.+.+.. +|+|.+|...|...+ ++++++++.. +++|+++- .....+.+..+.+.||+....
T Consensus 256 d~~era~aLveaG--vd~I~Id~a~g~~~~v~~~i~~i~~~~~~~~vi~g-~v~t~e~a~~~~~aGad~i~v 324 (511)
T 3usb_A 256 DAMTRIDALVKAS--VDAIVLDTAHGHSQGVIDKVKEVRAKYPSLNIIAG-NVATAEATKALIEAGANVVKV 324 (511)
T ss_dssp THHHHHHHHHHTT--CSEEEEECSCTTSHHHHHHHHHHHHHCTTSEEEEE-EECSHHHHHHHHHHTCSEEEE
T ss_pred chHHHHHHHHhhc--cceEEecccccchhhhhhHHHHHHHhCCCceEEee-eeccHHHHHHHHHhCCCEEEE
Confidence 3344444455534 999999988876655 4678888744 56777753 345678889999999998874
No 473
>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}
Probab=53.10 E-value=58 Score=28.07 Aligned_cols=69 Identities=17% Similarity=0.157 Sum_probs=48.2
Q ss_pred EECCHHHHHHHHHhCCCCceEEEEccCCCC------------CCHHHHHHHHhc---CCCCcEEEEeccCCHHHHHHHHh
Q 027234 7 KCNRAEIALDMLRTNKNGYDIVISDVHMPD------------MDGFKLLELVGL---EMDLPVIMMCAHGSKEVVMKGVT 71 (226)
Q Consensus 7 ~~~~~~eal~~l~~~~~~~DlVl~D~~mp~------------~dG~~l~~~l~~---~~~~pvI~ls~~~~~~~~~~a~~ 71 (226)
.+.+.++|..+... +.|.|.+-+. |+ ...++++..+.. ...+|||.-.+-.+...+.+++.
T Consensus 277 ~v~t~e~a~~l~~a---GaD~I~vg~g-~Gs~~~t~~~~g~g~p~~~~l~~v~~~~~~~~iPVIa~GGI~~~~di~kal~ 352 (490)
T 4avf_A 277 NIATAEAAKALAEA---GADAVKVGIG-PGSICTTRIVAGVGVPQISAIANVAAALEGTGVPLIADGGIRFSGDLAKAMV 352 (490)
T ss_dssp EECSHHHHHHHHHT---TCSEEEECSS-CSTTCHHHHHTCBCCCHHHHHHHHHHHHTTTTCCEEEESCCCSHHHHHHHHH
T ss_pred eeCcHHHHHHHHHc---CCCEEEECCC-CCcCCCccccCCCCccHHHHHHHHHHHhccCCCcEEEeCCCCCHHHHHHHHH
Confidence 36788888777664 3798887321 11 224455555432 35799998888889999999999
Q ss_pred CCcceEEe
Q 027234 72 HDACDYLT 79 (226)
Q Consensus 72 ~ga~~yl~ 79 (226)
+||++...
T Consensus 353 ~GAd~V~v 360 (490)
T 4avf_A 353 AGAYCVMM 360 (490)
T ss_dssp HTCSEEEE
T ss_pred cCCCeeee
Confidence 99998764
No 474
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=53.04 E-value=6.2 Score=25.22 Aligned_cols=21 Identities=19% Similarity=0.118 Sum_probs=17.5
Q ss_pred CCCCHHHHHHHhhhhhhhhhc
Q 027234 188 PGLTRENVASHLQKHRLYLSR 208 (226)
Q Consensus 188 ~~lt~~~va~~l~~~r~~l~r 208 (226)
.++|..+||..|++|+..+++
T Consensus 37 ~~~s~~EIA~~lgis~~tV~~ 57 (87)
T 1tty_A 37 KPKTLEEVGQYFNVTRERIRQ 57 (87)
T ss_dssp SCCCHHHHHHHHTCCHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHH
Confidence 689999999999999886543
No 475
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=53.00 E-value=7.8 Score=26.81 Aligned_cols=45 Identities=11% Similarity=-0.013 Sum_probs=29.2
Q ss_pred HHHHHHHhCCCCCCchHHHHhhCCCCCCHHHHHHHhhhhhhhhhcc
Q 027234 164 FVSAVKELGFDKAGPKKILELMNIPGLTRENVASHLQKHRLYLSRL 209 (226)
Q Consensus 164 Fi~~~~~~g~~~~~p~~I~~~~~~~~lt~~~va~~l~~~r~~l~r~ 209 (226)
+-..+...|+....-. |+..+..+++|..+||.+++++++.+++.
T Consensus 26 ~~~~~~~~~l~~~~~~-iL~~l~~~~~~~~ela~~l~~s~~tvs~~ 70 (146)
T 2gxg_A 26 LNRRLGELNLSYLDFL-VLRATSDGPKTMAYLANRYFVTQSAITAS 70 (146)
T ss_dssp HHHHHHTTTCCHHHHH-HHHHHTTSCBCHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHhcCCCHHHHH-HHHHHhcCCcCHHHHHHHhCCCchhHHHH
Confidence 3334555565433333 33333377899999999999999977653
No 476
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=52.84 E-value=4.5 Score=27.80 Aligned_cols=41 Identities=17% Similarity=0.345 Sum_probs=26.7
Q ss_pred HHhCCCCCCchHHHHhhCCCCCCHHHHHHHhhhhhhhhhcc
Q 027234 169 KELGFDKAGPKKILELMNIPGLTRENVASHLQKHRLYLSRL 209 (226)
Q Consensus 169 ~~~g~~~~~p~~I~~~~~~~~lt~~~va~~l~~~r~~l~r~ 209 (226)
...|+....-..+..+...++++..+||..+++++..+++.
T Consensus 23 ~~~~l~~~~~~iL~~l~~~~~~~~~ela~~l~~s~~tvs~~ 63 (138)
T 3bpv_A 23 GHLNLTDAQVACLLRIHREPGIKQDELATFFHVDKGTIART 63 (138)
T ss_dssp GGGTCCHHHHHHHHHHHHSTTCBHHHHHHHHTCCHHHHHHH
T ss_pred HhcCCCHHHHHHHHHHHHcCCCCHHHHHHHHCCCHHHHHHH
Confidence 33454332222333334457899999999999999987763
No 477
>2nv1_A Pyridoxal biosynthesis lyase PDXS; (beta/alpha)8-barrel, synthase; 2.08A {Bacillus subtilis} PDB: 2nv2_A* 1znn_A
Probab=52.73 E-value=15 Score=29.44 Aligned_cols=42 Identities=14% Similarity=0.100 Sum_probs=31.2
Q ss_pred HHHHHHHHhcCCCCcEE--EEeccCCHHHHHHHHhCCcceEEeC
Q 027234 39 GFKLLELVGLEMDLPVI--MMCAHGSKEVVMKGVTHDACDYLTK 80 (226)
Q Consensus 39 G~~l~~~l~~~~~~pvI--~ls~~~~~~~~~~a~~~ga~~yl~K 80 (226)
++++++.++....+||+ ...+-.+.+.+.+++..||++.+.=
T Consensus 195 ~~~~i~~i~~~~~iPvi~~a~GGI~~~~d~~~~~~~GadgV~vG 238 (305)
T 2nv1_A 195 PYELLLQIKKDGKLPVVNFAAGGVATPADAALMMQLGADGVFVG 238 (305)
T ss_dssp CHHHHHHHHHHTSCSSCEEBCSCCCSHHHHHHHHHTTCSCEEEC
T ss_pred cHHHHHHHHHhcCCCEEEEeccCCCCHHHHHHHHHcCCCEEEEc
Confidence 45677777655678988 4555557888999999999987743
No 478
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=51.89 E-value=5.8 Score=27.88 Aligned_cols=46 Identities=13% Similarity=0.108 Sum_probs=30.7
Q ss_pred HHHHHHHhCCCCCCchHHHHhhCCCCCCHHHHHHHhhhhhhhhhcc
Q 027234 164 FVSAVKELGFDKAGPKKILELMNIPGLTRENVASHLQKHRLYLSRL 209 (226)
Q Consensus 164 Fi~~~~~~g~~~~~p~~I~~~~~~~~lt~~~va~~l~~~r~~l~r~ 209 (226)
+-..+...|+....-..+..+...+++|..+||.+++++++.+.|.
T Consensus 30 ~~~~~~~~~lt~~~~~iL~~l~~~~~~t~~eLa~~l~~~~~tvs~~ 75 (154)
T 2qww_A 30 ADQNAASLGLTIQQLAMINVIYSTPGISVADLTKRLIITGSSAAAN 75 (154)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHSTTEEHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHH
Confidence 3344555676543333444445567899999999999999876653
No 479
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, complex; HET: GDP; 2.40A {Mycobacterium smegmatis} PDB: 2gej_A*
Probab=51.66 E-value=92 Score=24.99 Aligned_cols=77 Identities=9% Similarity=0.092 Sum_probs=49.8
Q ss_pred HHHHHHHHhCCCCceEEEEccCCCCCCHHHHHHHHhcCCCCcEEEEeccCCHHHHHHHHhCCcceEEeCCCCHHHHHHHH
Q 027234 12 EIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVGLEMDLPVIMMCAHGSKEVVMKGVTHDACDYLTKPVRIEELKNIW 91 (226)
Q Consensus 12 ~eal~~l~~~~~~~DlVl~D~~mp~~dG~~l~~~l~~~~~~pvI~ls~~~~~~~~~~a~~~ga~~yl~KP~~~~~L~~~l 91 (226)
.+..+++.. .|++++--.-.+.-|..+++.+. ..+|||. |.. ....+.+..|..+++..|-+.++|...+
T Consensus 274 ~~~~~~~~~----adv~v~ps~~~e~~~~~~~Ea~a--~G~PvI~-~~~---~~~~e~i~~~~~g~~~~~~d~~~l~~~i 343 (406)
T 2gek_A 274 ATKASAMRS----ADVYCAPHLGGESFGIVLVEAMA--AGTAVVA-SDL---DAFRRVLADGDAGRLVPVDDADGMAAAL 343 (406)
T ss_dssp HHHHHHHHH----SSEEEECCCSCCSSCHHHHHHHH--HTCEEEE-CCC---HHHHHHHTTTTSSEECCTTCHHHHHHHH
T ss_pred HHHHHHHHH----CCEEEecCCCCCCCchHHHHHHH--cCCCEEE-ecC---CcHHHHhcCCCceEEeCCCCHHHHHHHH
Confidence 444555554 56666542212333566666664 3467764 322 4455667778899999999999999999
Q ss_pred HHHHHHH
Q 027234 92 QHVVRKR 98 (226)
Q Consensus 92 ~~~~~~~ 98 (226)
..++...
T Consensus 344 ~~l~~~~ 350 (406)
T 2gek_A 344 IGILEDD 350 (406)
T ss_dssp HHHHHCH
T ss_pred HHHHcCH
Confidence 9988643
No 480
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=51.58 E-value=5.1 Score=23.38 Aligned_cols=26 Identities=19% Similarity=0.312 Sum_probs=18.9
Q ss_pred HHHhhCCCCCCHHHHHHHhhhhhhhhh
Q 027234 181 ILELMNIPGLTRENVASHLQKHRLYLS 207 (226)
Q Consensus 181 I~~~~~~~~lt~~~va~~l~~~r~~l~ 207 (226)
|+..+ ..|++..+||..|++|....+
T Consensus 6 vl~l~-~~g~s~~eIA~~l~is~~tV~ 31 (61)
T 2jpc_A 6 VLKLI-DEGYTNHGISEKLHISIKTVE 31 (61)
T ss_dssp HHHHH-HTSCCSHHHHHHTCSCHHHHH
T ss_pred HHHHH-HcCCCHHHHHHHhCCCHHHHH
Confidence 44444 348899999999999877543
No 481
>4dyq_A Gene 1 protein; GP1, octamer, DNA-binding, viral protein; 1.50A {Shigella phage SF6} PDB: 4dyc_A 4dyr_A 3hef_A 4dzj_A 4dzp_A
Probab=51.31 E-value=4.7 Score=28.58 Aligned_cols=28 Identities=18% Similarity=0.156 Sum_probs=23.0
Q ss_pred HHHHhhCCCCCCHHHHHHHhhh-hhhhhhc
Q 027234 180 KILELMNIPGLTRENVASHLQK-HRLYLSR 208 (226)
Q Consensus 180 ~I~~~~~~~~lt~~~va~~l~~-~r~~l~r 208 (226)
.|++.+.. |.+...||...+| |++.|||
T Consensus 20 ~I~~~i~~-G~sl~~i~~~~~~ps~~T~~~ 48 (140)
T 4dyq_A 20 DICSLLSS-GESLLKVCKRPGMPDKSTVFR 48 (140)
T ss_dssp HHHHHHHT-TCCHHHHHTSTTCCCHHHHHH
T ss_pred HHHHHHHC-CCcHHHHHhcCCCCCHHHHHH
Confidence 36666666 8999999999999 8988886
No 482
>3r1f_A ESX-1 secretion-associated regulator ESPR; helix-turn-helix, transcription factor, helix-turn-helix transcription factor; 2.50A {Mycobacterium tuberculosis}
Probab=51.08 E-value=7.1 Score=27.48 Aligned_cols=22 Identities=32% Similarity=0.327 Sum_probs=18.3
Q ss_pred CCCCHHHHHHHhh-----hhhhhhhcc
Q 027234 188 PGLTRENVASHLQ-----KHRLYLSRL 209 (226)
Q Consensus 188 ~~lt~~~va~~l~-----~~r~~l~r~ 209 (226)
.++|.++||..++ +|++|++++
T Consensus 25 ~~~T~~elA~~~~~~G~~is~s~is~~ 51 (135)
T 3r1f_A 25 GPHTSAEVIAALKAEGITMSAPYLSQL 51 (135)
T ss_dssp CCCCHHHHHHHHHTTTCCCCHHHHHHH
T ss_pred CCCCHHHHHHHHcccCCCcCHHHHHHH
Confidence 3688999999998 888888875
No 483
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=51.03 E-value=7.8 Score=24.28 Aligned_cols=22 Identities=14% Similarity=0.024 Sum_probs=18.3
Q ss_pred CCCCCHHHHHHHhhhhhhhhhc
Q 027234 187 IPGLTRENVASHLQKHRLYLSR 208 (226)
Q Consensus 187 ~~~lt~~~va~~l~~~r~~l~r 208 (226)
...++..+||..+++|+..++|
T Consensus 12 ~~~~s~~eLa~~lgvs~~tv~r 33 (81)
T 2htj_A 12 HNGGKTAEIAEALAVTDYQARY 33 (81)
T ss_dssp SCCCCHHHHHHHHTSCHHHHHH
T ss_pred cCCCCHHHHHHHHCcCHHHHHH
Confidence 3568999999999999987665
No 484
>2rdx_A Mandelate racemase/muconate lactonizing enzyme, P; enolase, structural genomics, PSI, protein structu initiative, nysgrc; 2.00A {Roseovarius nubinhibens}
Probab=50.51 E-value=58 Score=26.84 Aligned_cols=78 Identities=14% Similarity=0.102 Sum_probs=51.0
Q ss_pred CHHHHHHHHHhCCCCceEEEEccCCCCCCHHHHHHHHhcCCCCcEEEEeccCCHHHHHHHHhCCc-ceEEeCCCCHHHHH
Q 027234 10 RAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVGLEMDLPVIMMCAHGSKEVVMKGVTHDA-CDYLTKPVRIEELK 88 (226)
Q Consensus 10 ~~~eal~~l~~~~~~~DlVl~D~~mp~~dG~~l~~~l~~~~~~pvI~ls~~~~~~~~~~a~~~ga-~~yl~KP~~~~~L~ 88 (226)
+.++|+++++.. ..+++ .++--+| -++.++.+++...+||+.-=...+.....++++.|+ +.+..||....-+.
T Consensus 201 ~~~~a~~~~~~l-~~~~i-~iE~P~~---~~~~~~~l~~~~~iPI~~de~i~~~~~~~~~i~~~~~d~v~ik~~~~GGit 275 (379)
T 2rdx_A 201 RVDNAIRLARAT-RDLDY-ILEQPCR---SYEECQQVRRVADQPMKLDECVTGLHMAQRIVADRGAEICCLKISNLGGLS 275 (379)
T ss_dssp CHHHHHHHHHHT-TTSCC-EEECCSS---SHHHHHHHHTTCCSCEEECTTCCSHHHHHHHHHHTCCSEEEEETTTTTSHH
T ss_pred CHHHHHHHHHHH-HhCCe-EEeCCcC---CHHHHHHHHhhCCCCEEEeCCcCCHHHHHHHHHcCCCCEEEEeccccCCHH
Confidence 567888877664 23566 6554344 566677787666788876545556788888888875 45558887755554
Q ss_pred HHHH
Q 027234 89 NIWQ 92 (226)
Q Consensus 89 ~~l~ 92 (226)
..++
T Consensus 276 ~~~~ 279 (379)
T 2rdx_A 276 KARR 279 (379)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 485
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=50.38 E-value=6.2 Score=27.70 Aligned_cols=43 Identities=19% Similarity=0.189 Sum_probs=29.7
Q ss_pred HHHHHhCCCCCCchHHHHhhCCCCCCHHHHHHHhhhhhhhhhc
Q 027234 166 SAVKELGFDKAGPKKILELMNIPGLTRENVASHLQKHRLYLSR 208 (226)
Q Consensus 166 ~~~~~~g~~~~~p~~I~~~~~~~~lt~~~va~~l~~~r~~l~r 208 (226)
..+...|+....-..+..+...+++|..+||.++++++..+.|
T Consensus 32 ~~~~~~~lt~~q~~iL~~l~~~~~~~~~eLa~~l~~~~~~vs~ 74 (149)
T 4hbl_A 32 KKLKQFGITYSQYLVMLTLWEENPQTLNSIGRHLDLSSNTLTP 74 (149)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHSSSEEHHHHHHHHTCCHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHH
Confidence 3344566654333344444456899999999999999997765
No 486
>3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp}
Probab=50.37 E-value=34 Score=28.40 Aligned_cols=77 Identities=16% Similarity=-0.058 Sum_probs=0.0
Q ss_pred CCcEEEEECCHHHHHHHHHhCCCCceEEEEccCCCCCCH-HHHHHHHhcCCCCcEEEEeccCCHHHHHHHHhCCcceEEe
Q 027234 1 MGFSVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDG-FKLLELVGLEMDLPVIMMCAHGSKEVVMKGVTHDACDYLT 79 (226)
Q Consensus 1 lg~~V~~~~~~~eal~~l~~~~~~~DlVl~D~~mp~~dG-~~l~~~l~~~~~~pvI~ls~~~~~~~~~~a~~~ga~~yl~ 79 (226)
.++.+..-.+..+.++.+.+.. +|+|.+|........ .+.++.++....-..|+.-.-...+.+..+.+.|||....
T Consensus 91 ~~~~~g~~~~~~e~~~~a~~aG--vdvI~id~a~G~~~~~~e~I~~ir~~~~~~~Vi~G~V~T~e~A~~a~~aGaD~I~V 168 (361)
T 3r2g_A 91 VFVSVGCTENELQRAEALRDAG--ADFFCVDVAHAHAKYVGKTLKSLRQLLGSRCIMAGNVATYAGADYLASCGADIIKA 168 (361)
T ss_dssp CBEEECSSHHHHHHHHHHHHTT--CCEEEEECSCCSSHHHHHHHHHHHHHHTTCEEEEEEECSHHHHHHHHHTTCSEEEE
T ss_pred EEEEcCCCHHHHHHHHHHHHcC--CCEEEEeCCCCCcHhHHHHHHHHHHhcCCCeEEEcCcCCHHHHHHHHHcCCCEEEE
No 487
>3sgz_A Hydroxyacid oxidase 2; flavoprotein, homology, INH oxidoreductase-oxidoreductase inhibitor complex; HET: FMN HO6; 1.35A {Rattus norvegicus} PDB: 1tb3_A*
Probab=50.10 E-value=79 Score=26.07 Aligned_cols=73 Identities=14% Similarity=-0.013 Sum_probs=52.1
Q ss_pred EEEECCHHHHHHHHHhCCCCceEEEEccCCC-----CCCHHHHHHHHhc--CCCCcEEEEeccCCHHHHHHHHhCCcceE
Q 027234 5 VTKCNRAEIALDMLRTNKNGYDIVISDVHMP-----DMDGFKLLELVGL--EMDLPVIMMCAHGSKEVVMKGVTHDACDY 77 (226)
Q Consensus 5 V~~~~~~~eal~~l~~~~~~~DlVl~D~~mp-----~~dG~~l~~~l~~--~~~~pvI~ls~~~~~~~~~~a~~~ga~~y 77 (226)
|..+.+.++|....+. ++|.|++.-+-. +...++++..+.. ...+|||.-.+-.+...+.+++.+||+..
T Consensus 222 vK~v~~~e~A~~a~~~---GaD~I~vsn~GG~~~d~~~~~~~~L~~i~~av~~~ipVia~GGI~~g~Dv~kaLalGA~aV 298 (352)
T 3sgz_A 222 LKGILTKEDAELAMKH---NVQGIVVSNHGGRQLDEVSASIDALREVVAAVKGKIEVYMDGGVRTGTDVLKALALGARCI 298 (352)
T ss_dssp EEEECSHHHHHHHHHT---TCSEEEECCGGGTSSCSSCCHHHHHHHHHHHHTTSSEEEEESSCCSHHHHHHHHHTTCSEE
T ss_pred EEecCcHHHHHHHHHc---CCCEEEEeCCCCCccCCCccHHHHHHHHHHHhCCCCeEEEECCCCCHHHHHHHHHcCCCEE
Confidence 3345678888776653 389888754311 2345677776642 24699999999999999999999999997
Q ss_pred EeC
Q 027234 78 LTK 80 (226)
Q Consensus 78 l~K 80 (226)
..=
T Consensus 299 ~iG 301 (352)
T 3sgz_A 299 FLG 301 (352)
T ss_dssp EES
T ss_pred EEC
Confidence 753
No 488
>3qwg_A ESX-1 secretion-associated regulator ESPR; N-terminal helix-turn-helix motif, transcription factor, transcription; 1.99A {Mycobacterium tuberculosis} PDB: 3qf3_A 3qyx_A
Probab=49.87 E-value=6.8 Score=27.12 Aligned_cols=22 Identities=32% Similarity=0.327 Sum_probs=18.2
Q ss_pred CCCCHHHHHHHhh-----hhhhhhhcc
Q 027234 188 PGLTRENVASHLQ-----KHRLYLSRL 209 (226)
Q Consensus 188 ~~lt~~~va~~l~-----~~r~~l~r~ 209 (226)
.++|.++||..++ +|++|++++
T Consensus 23 ~~lT~~elA~~~~~~G~~iS~s~is~i 49 (123)
T 3qwg_A 23 GPHTSAEVIAALKAEGITMSAPYLSQL 49 (123)
T ss_dssp CSCCHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred CCCCHHHHHHHHcccCCCcCHHHHHHH
Confidence 3588999999998 888888875
No 489
>1rzs_A Antirepressor, regulatory protein CRO; helix-turn-helix, DNA-binding protein, structural evolution, transcription; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=49.55 E-value=6.5 Score=23.34 Aligned_cols=22 Identities=23% Similarity=0.025 Sum_probs=19.4
Q ss_pred CCCHHHHHHHhhhhhhhhhccc
Q 027234 189 GLTRENVASHLQKHRLYLSRLS 210 (226)
Q Consensus 189 ~lt~~~va~~l~~~r~~l~r~~ 210 (226)
+.|..++|..|++|++.+++..
T Consensus 10 ~~tq~~lA~~lGvs~~~Vs~we 31 (61)
T 1rzs_A 10 FGTQRAVAKALGISDAAVSQWK 31 (61)
T ss_dssp HSSHHHHHHHHTCCHHHHHHCC
T ss_pred cCCHHHHHHHhCCCHHHHHHHH
Confidence 4699999999999999998764
No 490
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=49.47 E-value=13 Score=25.12 Aligned_cols=31 Identities=23% Similarity=0.230 Sum_probs=23.3
Q ss_pred HHHhhCCCCCCHHHHHHHhhh-hhhhhhcccC
Q 027234 181 ILELMNIPGLTRENVASHLQK-HRLYLSRLSG 211 (226)
Q Consensus 181 I~~~~~~~~lt~~~va~~l~~-~r~~l~r~~~ 211 (226)
..+++..+++++.+||..+|- +.++|+|.|+
T Consensus 63 A~~lL~~~~~si~eIA~~~Gf~~~s~F~r~Fk 94 (120)
T 3mkl_A 63 ALQLIVIHGFSIKRVAVSCGYHSVSYFIYVFR 94 (120)
T ss_dssp HHHHHTSTTCCHHHHHHHTTCSCHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHCCCCHHHHHHHHH
Confidence 345566789999999999996 4667776553
No 491
>1qpo_A Quinolinate acid phosphoribosyl transferase; type II prtase, de novo NAD biosynthesis, PRPP, phosphoribos transferase; 2.40A {Mycobacterium tuberculosis H37RV} SCOP: c.1.17.1 d.41.2.1 PDB: 1qpn_A 1qpq_A* 1qpr_A*
Probab=49.46 E-value=36 Score=27.22 Aligned_cols=68 Identities=6% Similarity=-0.080 Sum_probs=45.0
Q ss_pred EEECCHHHHHHHHHhCCCCceEEEEccCCCCCCHHHHHHHHhc-CCCCcEEEEeccCCHHHHHHHHhCCcceEE
Q 027234 6 TKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLELVGL-EMDLPVIMMCAHGSKEVVMKGVTHDACDYL 78 (226)
Q Consensus 6 ~~~~~~~eal~~l~~~~~~~DlVl~D~~mp~~dG~~l~~~l~~-~~~~pvI~ls~~~~~~~~~~a~~~ga~~yl 78 (226)
..+.+.+++.+.++.. .|+|++|-.-|. +--+..+.++. .+.+ .|..|+.-+.+.+......|++.+.
T Consensus 199 Vev~t~eea~eal~aG---aD~I~LDn~~~~-~~~~~v~~l~~~~~~v-~ieaSGGIt~~~i~~~a~tGVD~is 267 (284)
T 1qpo_A 199 VEVDSLEQLDAVLPEK---PELILLDNFAVW-QTQTAVQRRDSRAPTV-MLESSGGLSLQTAATYAETGVDYLA 267 (284)
T ss_dssp EEESSHHHHHHHGGGC---CSEEEEETCCHH-HHHHHHHHHHHHCTTC-EEEEESSCCTTTHHHHHHTTCSEEE
T ss_pred EEeCCHHHHHHHHHcC---CCEEEECCCCHH-HHHHHHHHhhccCCCe-EEEEECCCCHHHHHHHHhcCCCEEE
Confidence 4677888988888743 799999973331 11122334432 2333 4567888888888888899988765
No 492
>2f6u_A GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate synthase; non-canonical TIM-barrel, prenyltransferase, archaeal lipid synthesis, dimer; HET: CIT; 1.55A {Archaeoglobus fulgidus} SCOP: c.1.4.1 PDB: 2f6x_A*
Probab=49.45 E-value=33 Score=26.61 Aligned_cols=53 Identities=11% Similarity=0.003 Sum_probs=43.4
Q ss_pred eEEEEccCCCCCCHHHHHHHHhcCC-CCcEEEEeccCCHHHHHHHHhCCcceEEeC
Q 027234 26 DIVISDVHMPDMDGFKLLELVGLEM-DLPVIMMCAHGSKEVVMKGVTHDACDYLTK 80 (226)
Q Consensus 26 DlVl~D~~mp~~dG~~l~~~l~~~~-~~pvI~ls~~~~~~~~~~a~~~ga~~yl~K 80 (226)
.+|.+|. +....-.++++++++.. .+|+++=-+-.+.+.+.++++ ||++.+.=
T Consensus 165 ~~Vyl~~-~G~~~~~~~i~~i~~~~~~~Pv~vGgGI~s~e~a~~~~~-gAd~VIVG 218 (234)
T 2f6u_A 165 PIIYIEY-SGTYGNPELVAEVKKVLDKARLFYGGGIDSREKAREMLR-YADTIIVG 218 (234)
T ss_dssp SEEEEEC-TTSCCCHHHHHHHHHHCSSSEEEEESCCCSHHHHHHHHH-HSSEEEEC
T ss_pred CEEEEeC-CCCcchHHHHHHHHHhCCCCCEEEEecCCCHHHHHHHHh-CCCEEEEC
Confidence 7888888 65555688999998666 899988777788899999888 99998865
No 493
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=49.35 E-value=3.9 Score=30.20 Aligned_cols=23 Identities=17% Similarity=0.258 Sum_probs=20.3
Q ss_pred CCCHHHHHHHhhhhhhhhhcccC
Q 027234 189 GLTRENVASHLQKHRLYLSRLSG 211 (226)
Q Consensus 189 ~lt~~~va~~l~~~r~~l~r~~~ 211 (226)
.+|+++||+.+|++|..++|+.+
T Consensus 164 ~~t~~~lA~~lg~sr~tvsR~l~ 186 (207)
T 2oz6_A 164 KITRQEIGRIVGCSREMVGRVLK 186 (207)
T ss_dssp ECCHHHHHHHHTSCHHHHHHHHH
T ss_pred ccCHHHHHHHhCCCHHHHHHHHH
Confidence 48999999999999999998644
No 494
>1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2 PDB: 1h1z_A
Probab=49.15 E-value=49 Score=25.07 Aligned_cols=67 Identities=9% Similarity=0.007 Sum_probs=42.0
Q ss_pred HHHHHHHHhCCCCceEEEEccCCCCCC-------HHHHHHHHhcCC-CCcEEEEeccCCHHHHHHHHhCCcceEEe
Q 027234 12 EIALDMLRTNKNGYDIVISDVHMPDMD-------GFKLLELVGLEM-DLPVIMMCAHGSKEVVMKGVTHDACDYLT 79 (226)
Q Consensus 12 ~eal~~l~~~~~~~DlVl~D~~mp~~d-------G~~l~~~l~~~~-~~pvI~ls~~~~~~~~~~a~~~ga~~yl~ 79 (226)
.+.++.+.......|.|+++-..|+.. +++.++++++.. ++|+++.-+ -+.+....+...||+.++.
T Consensus 126 ~e~~~~~~~~~~~~d~vl~~sv~pg~~g~~~~~~~l~~i~~~~~~~~~~pi~v~GG-I~~~ni~~~~~aGaD~vvv 200 (228)
T 1h1y_A 126 VEEVFPLVEAENPVELVLVMTVEPGFGGQKFMPEMMEKVRALRKKYPSLDIEVDGG-LGPSTIDVAASAGANCIVA 200 (228)
T ss_dssp GGGGHHHHHSSSCCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHCTTSEEEEESS-CSTTTHHHHHHHTCCEEEE
T ss_pred HHHHHHHHhcCCCCCEEEEEeecCCCCcccCCHHHHHHHHHHHHhcCCCCEEEECC-cCHHHHHHHHHcCCCEEEE
Confidence 344544443200289999988777633 355566666443 778765554 4446777778889999874
No 495
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*
Probab=49.05 E-value=50 Score=28.54 Aligned_cols=66 Identities=12% Similarity=0.080 Sum_probs=45.2
Q ss_pred HHHHHHHHHhCCCCceEEEEccCCCCCCH-HHHHHHHhcC-CCCcEEEEeccCCHHHHHHHHhCCcceEEe
Q 027234 11 AEIALDMLRTNKNGYDIVISDVHMPDMDG-FKLLELVGLE-MDLPVIMMCAHGSKEVVMKGVTHDACDYLT 79 (226)
Q Consensus 11 ~~eal~~l~~~~~~~DlVl~D~~mp~~dG-~~l~~~l~~~-~~~pvI~ls~~~~~~~~~~a~~~ga~~yl~ 79 (226)
..+..+.+.+.. +|+|.+|........ .++++.++.. +++||++-+. ...+.+..+.+.||+....
T Consensus 256 ~~~~a~~~~~aG--~d~v~i~~~~G~~~~~~~~i~~i~~~~~~~pvi~~~v-~t~~~a~~l~~aGad~I~v 323 (514)
T 1jcn_A 256 DKYRLDLLTQAG--VDVIVLDSSQGNSVYQIAMVHYIKQKYPHLQVIGGNV-VTAAQAKNLIDAGVDGLRV 323 (514)
T ss_dssp HHHHHHHHHHTT--CSEEEECCSCCCSHHHHHHHHHHHHHCTTCEEEEEEE-CSHHHHHHHHHHTCSEEEE
T ss_pred hHHHHHHHHHcC--CCEEEeeccCCcchhHHHHHHHHHHhCCCCceEeccc-chHHHHHHHHHcCCCEEEE
Confidence 344444454433 999999887654433 5788888754 4788876333 5678888999999987755
No 496
>4hjf_A Ggdef family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, EAL domain, signaling protein; HET: MSE C2E; 1.75A {Caulobacter crescentus}
Probab=48.65 E-value=0.91 Score=37.52 Aligned_cols=47 Identities=19% Similarity=0.135 Sum_probs=37.5
Q ss_pred ccccCCCCCCccchHHHHHHhccCCceeeeHhhHHHHHHHHHHhCCCCC
Q 027234 128 YSVNEGTSNSRKDEEEEAEKRLKKPRLVWSVELHQQFVSAVKELGFDKA 176 (226)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Fi~~~~~~g~~~~ 176 (226)
+.++.....+++..+.|++.||.+|..++ ..+..|++.+++.|+...
T Consensus 92 ~yQPiv~l~~g~i~g~EaL~Rw~~~~~g~--i~p~~fi~~ae~~gli~~ 138 (340)
T 4hjf_A 92 YFQPIVRLSTGALSGFEALARWIHPRRGM--LPPDEFLPLIEEMGLMSE 138 (340)
T ss_dssp EEEEEEETTTCCEEEEEEEEEEEETTTEE--ECHHHHHHHHHHTTCHHH
T ss_pred EEeeEEECCCCcEEEEEEEEEEECCCCCc--cCHHHHHHHHHHcCcHHH
Confidence 44555566778888899999999998874 678999999999987543
No 497
>1nr3_A MTH0916, DNA-binding protein TFX; northeast structural genomics consortium, reduced- dimensionality PSI; NMR {Methanothermobacterthermautotrophicus} SCOP: d.236.1.1
Probab=48.31 E-value=2.9 Score=28.80 Aligned_cols=22 Identities=23% Similarity=0.439 Sum_probs=19.8
Q ss_pred CCCCHHHHHHHhhhhhhhhhcc
Q 027234 188 PGLTRENVASHLQKHRLYLSRL 209 (226)
Q Consensus 188 ~~lt~~~va~~l~~~r~~l~r~ 209 (226)
-++|++++|..+++|+++++++
T Consensus 4 ~glTQ~eLA~~~Gvs~~~is~~ 25 (122)
T 1nr3_A 4 RGWSQKKIARELKTTRQNVSAI 25 (122)
T ss_dssp CSCSSCSTHHHHHHCCSSSCCH
T ss_pred cCCCHHHHHHHhCCCHHHHHHH
Confidence 5899999999999999998774
No 498
>1ypf_A GMP reductase; GUAC, purines, pyrimidines, nucleosides, nucleotides, nucleo nucleoside interconversions, spine, structural genomics; 1.80A {Bacillus anthracis} PDB: 2a1y_A*
Probab=48.24 E-value=1.1e+02 Score=24.79 Aligned_cols=68 Identities=13% Similarity=0.107 Sum_probs=49.4
Q ss_pred ECCHHHHHHHHHhCCCCceEEEEccCCCCC--C------------HHHHHHHHhcCCCCcEEEEeccCCHHHHHHHHhCC
Q 027234 8 CNRAEIALDMLRTNKNGYDIVISDVHMPDM--D------------GFKLLELVGLEMDLPVIMMCAHGSKEVVMKGVTHD 73 (226)
Q Consensus 8 ~~~~~eal~~l~~~~~~~DlVl~D~~mp~~--d------------G~~l~~~l~~~~~~pvI~ls~~~~~~~~~~a~~~g 73 (226)
+.+.++|....+.. .|.|++.-+ ++. + .++++..++...++|||.-.+-.+...+.+++.+|
T Consensus 157 v~s~e~A~~a~~aG---ad~Ivvs~h-gG~~~~~~~~~~~g~~g~~~~~l~~v~~~~~ipVIa~GGI~~g~Dv~kalalG 232 (336)
T 1ypf_A 157 VGTPEAVRELENAG---ADATKVGIG-PGKVCITKIKTGFGTGGWQLAALRWCAKAASKPIIADGGIRTNGDVAKSIRFG 232 (336)
T ss_dssp ECSHHHHHHHHHHT---CSEEEECSS-CSTTCHHHHHHSCSSTTCHHHHHHHHHHTCSSCEEEESCCCSTHHHHHHHHTT
T ss_pred cCCHHHHHHHHHcC---CCEEEEecC-CCceeecccccCcCCchhHHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHcC
Confidence 56777887776643 788887432 221 1 36667777655689999888888899999999999
Q ss_pred cceEEe
Q 027234 74 ACDYLT 79 (226)
Q Consensus 74 a~~yl~ 79 (226)
|+....
T Consensus 233 AdaV~i 238 (336)
T 1ypf_A 233 ATMVMI 238 (336)
T ss_dssp CSEEEE
T ss_pred CCEEEe
Confidence 998663
No 499
>1p0k_A Isopentenyl-diphosphate delta-isomerase; terpene biosynthesis, dimethylallyl diphosphate, flavoprotein; 1.90A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1p0n_A*
Probab=48.17 E-value=93 Score=25.22 Aligned_cols=44 Identities=14% Similarity=-0.065 Sum_probs=35.2
Q ss_pred CCHHHHHHHHhcC-CCCcEEEEeccCCHHHHHHHHhCCcceEEeC
Q 027234 37 MDGFKLLELVGLE-MDLPVIMMCAHGSKEVVMKGVTHDACDYLTK 80 (226)
Q Consensus 37 ~dG~~l~~~l~~~-~~~pvI~ls~~~~~~~~~~a~~~ga~~yl~K 80 (226)
....+.+..++.. .++|||.-.+-.+.+.+.+++.+||+....=
T Consensus 236 ~~~~~~l~~v~~~~~~ipvia~GGI~~~~d~~k~l~~GAd~V~iG 280 (349)
T 1p0k_A 236 ISTAASLAEIRSEFPASTMIASGGLQDALDVAKAIALGASCTGMA 280 (349)
T ss_dssp CCHHHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHHTTCSEEEEC
T ss_pred ccHHHHHHHHHHhcCCCeEEEECCCCCHHHHHHHHHcCCCEEEEc
Confidence 4566667766543 4799999999899999999999999988754
No 500
>3jr2_A Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulonate-6-phosphate decarboxylase, ULAD, niaid,CSG bound, biosynthetic protein; HET: MSE; 1.80A {Vibrio cholerae} SCOP: c.1.2.0 PDB: 3ieb_A*
Probab=48.03 E-value=11 Score=28.69 Aligned_cols=84 Identities=6% Similarity=-0.089 Sum_probs=52.3
Q ss_pred ECCHHHHHHHHHhCCCCceEEEEccCCCC--CCHHHHHHHHhcC-CCCcEEEEe-ccCC-HHHHHHHHhCCcceEEeCCC
Q 027234 8 CNRAEIALDMLRTNKNGYDIVISDVHMPD--MDGFKLLELVGLE-MDLPVIMMC-AHGS-KEVVMKGVTHDACDYLTKPV 82 (226)
Q Consensus 8 ~~~~~eal~~l~~~~~~~DlVl~D~~mp~--~dG~~l~~~l~~~-~~~pvI~ls-~~~~-~~~~~~a~~~ga~~yl~KP~ 82 (226)
+.+.+++++.++... ..+-++++.+|- ..|.++++.++.. ++.|+++-. -.+. ......+.++||+....-..
T Consensus 15 ~~~~~~~~~~~~~~~--~~vd~ie~g~~~~~~~G~~~i~~lr~~~~~~~i~ld~~l~d~p~~~~~~~~~aGad~i~vh~~ 92 (218)
T 3jr2_A 15 QTNLTDAVAVASNVA--SYVDVIEVGTILAFAEGMKAVSTLRHNHPNHILVCDMKTTDGGAILSRMAFEAGADWITVSAA 92 (218)
T ss_dssp CSSHHHHHHHHHHHG--GGCSEEEECHHHHHHHTTHHHHHHHHHCTTSEEEEEEEECSCHHHHHHHHHHHTCSEEEEETT
T ss_pred CCCHHHHHHHHHHhc--CCceEEEeCcHHHHhcCHHHHHHHHHhCCCCcEEEEEeecccHHHHHHHHHhcCCCEEEEecC
Confidence 457889999887643 233456666553 3578888988855 567776522 2223 34567788999998777655
Q ss_pred CHHH-HHHHHHH
Q 027234 83 RIEE-LKNIWQH 93 (226)
Q Consensus 83 ~~~~-L~~~l~~ 93 (226)
..++ +...++.
T Consensus 93 ~~~~~~~~~~~~ 104 (218)
T 3jr2_A 93 AHIATIAACKKV 104 (218)
T ss_dssp SCHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 5433 4444443
Done!