BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027236
(226 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4GUR|A Chain A, Crystal Structure Of Lsd2-npac With H3 In Space Group P21
pdb|4GUS|A Chain A, Crystal Structure Of Lsd2-npac With H3 In Space Group
P3221
pdb|4GUT|A Chain A, Crystal Structure Of Lsd2-npac
pdb|4GUU|A Chain A, Crystal Structure Of Lsd2-npac With Tranylcypromine
pdb|4GU0|A Chain A, Crystal Structure Of Lsd2 With H3
pdb|4GU0|B Chain B, Crystal Structure Of Lsd2 With H3
pdb|4GU0|C Chain C, Crystal Structure Of Lsd2 With H3
pdb|4GU0|D Chain D, Crystal Structure Of Lsd2 With H3
pdb|4HSU|A Chain A, Crystal Structure Of Lsd2-npac With H3(1-26)in Space Group
P21
Length = 776
Score = 34.3 bits (77), Expect = 0.063, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 161 FLEKLSQWRKRKRMLRDIWDPIMENSPKNLKEFKEELGIEYDEDVGVSLQ 210
L+ +S+WRK K L+D+ P+ E + K F +E GI++ E G LQ
Sbjct: 444 LLDVVSEWRKDKTQLQDV--PLGEKIEEIYKAFIKESGIQFSELEGQVLQ 491
>pdb|4GU1|A Chain A, Crystal Structure Of Lsd2
pdb|4GU1|B Chain B, Crystal Structure Of Lsd2
Length = 784
Score = 34.3 bits (77), Expect = 0.065, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 161 FLEKLSQWRKRKRMLRDIWDPIMENSPKNLKEFKEELGIEYDEDVGVSLQ 210
L+ +S+WRK K L+D+ P+ E + K F +E GI++ E G LQ
Sbjct: 452 LLDVVSEWRKDKTQLQDV--PLGEKIEEIYKAFIKESGIQFSELEGQVLQ 499
>pdb|4FWE|A Chain A, Native Structure Of Lsd2 /aof1/kdm1b In Spacegroup Of
C2221 At 2.13a
pdb|4FWF|A Chain A, Complex Structure Of Lsd2/aof1/kdm1b With H3k4 Mimic
pdb|4FWJ|A Chain A, Native Structure Of Lsd2/aof1/kdm1b In Spacegroup Of I222
At 2.9a
pdb|4FWJ|B Chain B, Native Structure Of Lsd2/aof1/kdm1b In Spacegroup Of I222
At 2.9a
Length = 796
Score = 33.9 bits (76), Expect = 0.073, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 161 FLEKLSQWRKRKRMLRDIWDPIMENSPKNLKEFKEELGIEYDEDVGVSLQ 210
L+ +S+WRK K L+D+ P+ E + K F +E GI++ E G LQ
Sbjct: 464 LLDVVSEWRKDKTQLQDV--PLGEKIEEIYKAFIKESGIQFSELEGQVLQ 511
>pdb|1VGP|A Chain A, Crystal Structure Of An Isozyme Of Citrate Synthase From
Sulfolbus Tokodaii Strain7
Length = 373
Score = 31.2 bits (69), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 52/107 (48%), Gaps = 20/107 (18%)
Query: 75 IPNSEELNQMKEENAKLQEQ----------LEEQRKAISKLEGEIRTLQSNLTLEQIREK 124
+PN EELN +E KL+E+ L E RK ++ +RT S L +E +
Sbjct: 55 LPNREELNWFQE---KLREERYLPDFIIKFLREVRKDAQPMD-ILRTAVSLLGIEDSKND 110
Query: 125 E------AQLVKEVKEMENKLAKLRGGVTLVKPEDRMAVEEMFLEKL 165
E +L+ + + A+LR G+ +++P+ +++ E FL L
Sbjct: 111 ERTDIKGIKLISKFPTIVANYARLRKGLDIIEPDPKLSHSENFLYML 157
>pdb|2EFJ|A Chain A, The Structure Of 1,7 Dimethylxanthine Methyltransferase
Length = 384
Score = 30.8 bits (68), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 23/34 (67%)
Query: 66 YIARQDQFDIPNSEELNQMKEENAKLQEQLEEQR 99
+I ++D+FD PNS +L +M + ++ LEE++
Sbjct: 225 FICKEDEFDHPNSMDLLEMSINDLVIEGHLEEEK 258
>pdb|1X9J|A Chain A, Structure Of Butyrate Kinase 2 Reveals Both Open- And
Citrate-Induced Closed Conformations: Implications For
Substrate-Induced Fit Conformational Changes
pdb|1X9J|B Chain B, Structure Of Butyrate Kinase 2 Reveals Both Open- And
Citrate-Induced Closed Conformations: Implications For
Substrate-Induced Fit Conformational Changes
pdb|1X9J|C Chain C, Structure Of Butyrate Kinase 2 Reveals Both Open- And
Citrate-Induced Closed Conformations: Implications For
Substrate-Induced Fit Conformational Changes
pdb|1X9J|D Chain D, Structure Of Butyrate Kinase 2 Reveals Both Open- And
Citrate-Induced Closed Conformations: Implications For
Substrate-Induced Fit Conformational Changes
pdb|1X9J|E Chain E, Structure Of Butyrate Kinase 2 Reveals Both Open- And
Citrate-Induced Closed Conformations: Implications For
Substrate-Induced Fit Conformational Changes
pdb|1X9J|F Chain F, Structure Of Butyrate Kinase 2 Reveals Both Open- And
Citrate-Induced Closed Conformations: Implications For
Substrate-Induced Fit Conformational Changes
pdb|1X9J|G Chain G, Structure Of Butyrate Kinase 2 Reveals Both Open- And
Citrate-Induced Closed Conformations: Implications For
Substrate-Induced Fit Conformational Changes
pdb|1X9J|H Chain H, Structure Of Butyrate Kinase 2 Reveals Both Open- And
Citrate-Induced Closed Conformations: Implications For
Substrate-Induced Fit Conformational Changes
Length = 375
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 192 EFKEELGIEYDEDVGVSLQSFSDLLQRG 219
EF+E++ ++ E+ G SL SFS + RG
Sbjct: 48 EFREKIARQFVEETGYSLSSFSAFVSRG 75
>pdb|1SAZ|A Chain A, Membership In The Askha Superfamily: Enzymological
Properties And Crystal Structure Of Butyrate Kinase 2
From Thermotoga Maritima
Length = 381
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 192 EFKEELGIEYDEDVGVSLQSFSDLLQRG 219
EF+E++ ++ E+ G SL SFS + RG
Sbjct: 48 EFREKIARQFVEETGYSLSSFSAFVSRG 75
>pdb|1WIN|A Chain A, Solution Structure Of The Band 7 Domain Of The Mouse
Flotillin 2 Protein
Length = 143
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 24/35 (68%), Gaps = 3/35 (8%)
Query: 101 AISKLEGEIRTLQSNLTLEQI---REKEAQLVKEV 132
+ LEG +R++ LT+EQI R++ A+LV+EV
Sbjct: 68 VLQTLEGHLRSILGTLTVEQIYQDRDQFAKLVREV 102
>pdb|3TD3|A Chain A, Crystal Structure Of Ompa-Like Domain From Acinetobacter
Baumannii In Complex With Glycine
pdb|3TD3|B Chain B, Crystal Structure Of Ompa-Like Domain From Acinetobacter
Baumannii In Complex With Glycine
pdb|3TD3|C Chain C, Crystal Structure Of Ompa-Like Domain From Acinetobacter
Baumannii In Complex With Glycine
pdb|3TD3|D Chain D, Crystal Structure Of Ompa-Like Domain From Acinetobacter
Baumannii In Complex With Glycine
pdb|3TD3|E Chain E, Crystal Structure Of Ompa-Like Domain From Acinetobacter
Baumannii In Complex With Glycine
pdb|3TD3|F Chain F, Crystal Structure Of Ompa-Like Domain From Acinetobacter
Baumannii In Complex With Glycine
pdb|3TD3|G Chain G, Crystal Structure Of Ompa-Like Domain From Acinetobacter
Baumannii In Complex With Glycine
pdb|3TD3|H Chain H, Crystal Structure Of Ompa-Like Domain From Acinetobacter
Baumannii In Complex With Glycine
pdb|3TD4|A Chain A, Crystal Structure Of Ompa-Like Domain From Acinetobacter
Baumannii In Complex With Diaminopimelate
pdb|3TD4|B Chain B, Crystal Structure Of Ompa-Like Domain From Acinetobacter
Baumannii In Complex With Diaminopimelate
pdb|3TD4|C Chain C, Crystal Structure Of Ompa-Like Domain From Acinetobacter
Baumannii In Complex With Diaminopimelate
pdb|3TD4|D Chain D, Crystal Structure Of Ompa-Like Domain From Acinetobacter
Baumannii In Complex With Diaminopimelate
pdb|3TD4|E Chain E, Crystal Structure Of Ompa-Like Domain From Acinetobacter
Baumannii In Complex With Diaminopimelate
pdb|3TD4|F Chain F, Crystal Structure Of Ompa-Like Domain From Acinetobacter
Baumannii In Complex With Diaminopimelate
pdb|3TD4|G Chain G, Crystal Structure Of Ompa-Like Domain From Acinetobacter
Baumannii In Complex With Diaminopimelate
pdb|3TD4|H Chain H, Crystal Structure Of Ompa-Like Domain From Acinetobacter
Baumannii In Complex With Diaminopimelate
pdb|3TD5|A Chain A, Crystal Structure Of Ompa-Like Domain From Acinetobacter
Baumannii In Complex With
L-Ala-Gamma-D-Glu-M-Dap-D-Ala-D-Ala
pdb|3TD5|B Chain B, Crystal Structure Of Ompa-Like Domain From Acinetobacter
Baumannii In Complex With
L-Ala-Gamma-D-Glu-M-Dap-D-Ala-D-Ala
pdb|3TD5|C Chain C, Crystal Structure Of Ompa-Like Domain From Acinetobacter
Baumannii In Complex With
L-Ala-Gamma-D-Glu-M-Dap-D-Ala-D-Ala
pdb|3TD5|D Chain D, Crystal Structure Of Ompa-Like Domain From Acinetobacter
Baumannii In Complex With
L-Ala-Gamma-D-Glu-M-Dap-D-Ala-D-Ala
pdb|3TD5|E Chain E, Crystal Structure Of Ompa-Like Domain From Acinetobacter
Baumannii In Complex With
L-Ala-Gamma-D-Glu-M-Dap-D-Ala-D-Ala
pdb|3TD5|F Chain F, Crystal Structure Of Ompa-Like Domain From Acinetobacter
Baumannii In Complex With
L-Ala-Gamma-D-Glu-M-Dap-D-Ala-D-Ala
pdb|3TD5|G Chain G, Crystal Structure Of Ompa-Like Domain From Acinetobacter
Baumannii In Complex With
L-Ala-Gamma-D-Glu-M-Dap-D-Ala-D-Ala
pdb|3TD5|H Chain H, Crystal Structure Of Ompa-Like Domain From Acinetobacter
Baumannii In Complex With
L-Ala-Gamma-D-Glu-M-Dap-D-Ala-D-Ala
Length = 123
Score = 28.9 bits (63), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 5/64 (7%)
Query: 73 FDIPNSEELNQMKEENAKLQEQLEEQRKAISKLEGEI-----RTLQSNLTLEQIREKEAQ 127
FD S +Q K E AK+ E+L E A +++EG R L L+L + ++
Sbjct: 18 FDTNKSNIKDQYKPEIAKVAEKLSEYPNATARIEGHTDNTGPRKLNERLSLARANSVKSA 77
Query: 128 LVKE 131
LV E
Sbjct: 78 LVNE 81
>pdb|3O2P|E Chain E, A Dual E3 Mechanism For Rub1 Ligation To Cdc53:
Dcn1(P)-Cdc53(Whb)
Length = 88
Score = 28.5 bits (62), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 30/52 (57%)
Query: 17 NEQNRPLNSQNVADALQKYNLKKAGIQKALDSLADNGKISFKEYGKQKIYIA 68
N + L ++ +A + Q++N K + +++A+DSL G + + G+ Y+A
Sbjct: 37 NLPHTTLVNECIAQSHQRFNAKVSMVKRAIDSLIQKGYLQRGDDGESYAYLA 88
>pdb|1PZX|A Chain A, Hypothetical Protein Apc36103 From Bacillus
Stearothermophilus: A Lipid Binding Protein
pdb|1PZX|B Chain B, Hypothetical Protein Apc36103 From Bacillus
Stearothermophilus: A Lipid Binding Protein
Length = 289
Score = 28.1 bits (61), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 39/68 (57%), Gaps = 5/68 (7%)
Query: 137 NKLAKLRGGVTLVKPEDRMAVEEMFLEKLSQWRKRKRMLRDIWDPIMENSPKNLKEFKEE 196
+K A GG+ +KP + VE+ L L +WR RK++L+ + + +M +L+ K+
Sbjct: 178 SKTAAAFGGLLNIKP--LLHVEDGALIPLEKWRGRKKVLKRMVE-LMGERGDDLQ--KQT 232
Query: 197 LGIEYDED 204
+GI + +D
Sbjct: 233 IGISHADD 240
>pdb|4B10|A Chain A, Plasmodium Vivax N-Myristoyltransferase With A Non-
Hydrolysable Co-Factor
pdb|4B10|B Chain B, Plasmodium Vivax N-Myristoyltransferase With A Non-
Hydrolysable Co-Factor
pdb|4B10|C Chain C, Plasmodium Vivax N-Myristoyltransferase With A Non-
Hydrolysable Co-Factor
pdb|4B11|A Chain A, Plasmodium Vivax N-Myristoyltransferase With A Bound
Benzofuran Inhibitor (Compound 13)
pdb|4B11|B Chain B, Plasmodium Vivax N-Myristoyltransferase With A Bound
Benzofuran Inhibitor (Compound 13)
pdb|4B11|C Chain C, Plasmodium Vivax N-Myristoyltransferase With A Bound
Benzofuran Inhibitor (Compound 13)
pdb|4B12|A Chain A, Plasmodium Vivax N-Myristoyltransferase With A Bound
Benzofuran Inhibitor (Compound 23)
pdb|4B12|B Chain B, Plasmodium Vivax N-Myristoyltransferase With A Bound
Benzofuran Inhibitor (Compound 23)
pdb|4B12|C Chain C, Plasmodium Vivax N-Myristoyltransferase With A Bound
Benzofuran Inhibitor (Compound 23)
pdb|4B13|A Chain A, Plasmodium Vivax N-Myristoyltransferase With A Bound
Benzofuran Inhibitor (Compound 25)
pdb|4B13|B Chain B, Plasmodium Vivax N-Myristoyltransferase With A Bound
Benzofuran Inhibitor (Compound 25)
pdb|4B13|C Chain C, Plasmodium Vivax N-Myristoyltransferase With A Bound
Benzofuran Inhibitor (Compound 25)
pdb|4B14|A Chain A, Plasmodium Vivax N-Myristoyltransferase With A Bound
Benzofuran Inhibitor (Compound 26)
pdb|4B14|B Chain B, Plasmodium Vivax N-Myristoyltransferase With A Bound
Benzofuran Inhibitor (Compound 26)
pdb|4B14|C Chain C, Plasmodium Vivax N-Myristoyltransferase With A Bound
Benzofuran Inhibitor (Compound 26)
Length = 385
Score = 28.1 bits (61), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 39/86 (45%), Gaps = 13/86 (15%)
Query: 9 EAIVLNYVNEQNRPLNSQNVADALQKYNL--------KKAGIQKALDSLADNGKISFKEY 60
E ++ YVNE+N + D + Y+L K + + A +FK+
Sbjct: 269 ENVIYTYVNEEN-----GKIKDMISFYSLPSQILGNDKYSTLNAAYSFYNVTTTATFKQL 323
Query: 61 GKQKIYIARQDQFDIPNSEELNQMKE 86
+ I +A+++ FD+ N+ E+ Q K
Sbjct: 324 MQDAILLAKRNNFDVFNALEVMQNKS 349
>pdb|4A95|A Chain A, Plasmodium Vivax N-Myristoyltransferase With Quinoline
Inhibitor
pdb|4A95|B Chain B, Plasmodium Vivax N-Myristoyltransferase With Quinoline
Inhibitor
pdb|4A95|C Chain C, Plasmodium Vivax N-Myristoyltransferase With Quinoline
Inhibitor
pdb|4BBH|A Chain A, Plasmodium Vivax N-myristoyltransferase With A Bound
Benzothiophene Inhibitor
pdb|4BBH|B Chain B, Plasmodium Vivax N-myristoyltransferase With A Bound
Benzothiophene Inhibitor
pdb|4BBH|C Chain C, Plasmodium Vivax N-myristoyltransferase With A Bound
Benzothiophene Inhibitor
Length = 384
Score = 28.1 bits (61), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 39/86 (45%), Gaps = 13/86 (15%)
Query: 9 EAIVLNYVNEQNRPLNSQNVADALQKYNL--------KKAGIQKALDSLADNGKISFKEY 60
E ++ YVNE+N + D + Y+L K + + A +FK+
Sbjct: 268 ENVIYTYVNEEN-----GKIKDMISFYSLPSQILGNDKYSTLNAAYSFYNVTTTATFKQL 322
Query: 61 GKQKIYIARQDQFDIPNSEELNQMKE 86
+ I +A+++ FD+ N+ E+ Q K
Sbjct: 323 MQDAILLAKRNNFDVFNALEVMQNKS 348
>pdb|3O6B|B Chain B, A Dual E3 Mechanism For Rub1 Ligation To Cdc53:
Dcn1(P)-Cdc53(Whb) Low Resolution
pdb|3O6B|D Chain D, A Dual E3 Mechanism For Rub1 Ligation To Cdc53:
Dcn1(P)-Cdc53(Whb) Low Resolution
pdb|3O6B|F Chain F, A Dual E3 Mechanism For Rub1 Ligation To Cdc53:
Dcn1(P)-Cdc53(Whb) Low Resolution
pdb|3O6B|H Chain H, A Dual E3 Mechanism For Rub1 Ligation To Cdc53:
Dcn1(P)-Cdc53(Whb) Low Resolution
pdb|3O6B|J Chain J, A Dual E3 Mechanism For Rub1 Ligation To Cdc53:
Dcn1(P)-Cdc53(Whb) Low Resolution
Length = 76
Score = 27.7 bits (60), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 30/52 (57%)
Query: 17 NEQNRPLNSQNVADALQKYNLKKAGIQKALDSLADNGKISFKEYGKQKIYIA 68
N + L ++ +A + Q++N K + +++A+DSL G + + G+ Y+A
Sbjct: 25 NLPHTTLVNECIAQSHQRFNAKVSMVKRAIDSLIQKGYLQRGDDGESYAYLA 76
>pdb|3CIK|A Chain A, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3V5W|A Chain A, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 689
Score = 27.3 bits (59), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 42/92 (45%), Gaps = 22/92 (23%)
Query: 107 GEIRTLQSNLTLEQIREKEAQLVKEVKEMENKLAKLRGGVTLVKPEDRMAVEEMFLEKLS 166
GE QS LT+E+I+ E +KE K + L K+RGG + D +L
Sbjct: 592 GEGEAPQSLLTMEEIQSVEETQIKERKCL---LLKIRGGKQFILQCDSDP-------ELV 641
Query: 167 QWRKRKRMLRDIWD---------PIMENSPKN 189
QW+K LRD + P M+N P++
Sbjct: 642 QWKKE---LRDAYREAQQLVQRVPKMKNKPRS 670
>pdb|3KRW|A Chain A, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|A Chain A, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
Length = 688
Score = 27.3 bits (59), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 42/92 (45%), Gaps = 22/92 (23%)
Query: 107 GEIRTLQSNLTLEQIREKEAQLVKEVKEMENKLAKLRGGVTLVKPEDRMAVEEMFLEKLS 166
GE QS LT+E+I+ E +KE K + L K+RGG + D +L
Sbjct: 591 GEGEAPQSLLTMEEIQSVEETQIKERKCL---LLKIRGGKQFILQCDSDP-------ELV 640
Query: 167 QWRKRKRMLRDIWD---------PIMENSPKN 189
QW+K LRD + P M+N P++
Sbjct: 641 QWKKE---LRDAYREAQQLVQRVPKMKNKPRS 669
>pdb|2O5V|A Chain A, Recombination Mediator Recf
Length = 359
Score = 27.3 bits (59), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 39/91 (42%), Gaps = 14/91 (15%)
Query: 63 QKIYIARQDQFDIPNSEELNQMKEENAKLQEQLEEQRKAISKLEGEIRTLQSNLTLEQIR 122
+ Y+A Q D P E+L Q E A ++ L +Q ++S E + + L ++ +R
Sbjct: 44 EAAYLALTGQTDAPRIEQLIQAGETEAYVRADL-QQGGSLSIQEVGLGRGRRQLKVDGVR 102
Query: 123 EKEAQLVKEVKEMENKLAKLRGGVTLVKPED 153
+ L RGG ++PED
Sbjct: 103 ARTGDLP-------------RGGAVWIRPED 120
>pdb|1OMW|A Chain A, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1YM7|A Chain A, G Protein-Coupled Receptor Kinase 2 (Grk2)
pdb|1YM7|B Chain B, G Protein-Coupled Receptor Kinase 2 (Grk2)
pdb|1YM7|C Chain C, G Protein-Coupled Receptor Kinase 2 (Grk2)
pdb|1YM7|D Chain D, G Protein-Coupled Receptor Kinase 2 (Grk2)
pdb|2BCJ|A Chain A, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
pdb|3UZS|A Chain A, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3UZT|A Chain A, Structure Of The C13.18 Rna Aptamer In Complex With G
Protein-Coupled Receptor Kinase 2
Length = 689
Score = 27.3 bits (59), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 41/91 (45%), Gaps = 22/91 (24%)
Query: 107 GEIRTLQSNLTLEQIREKEAQLVKEVKEMENKLAKLRGGVTLVKPEDRMAVEEMFLEKLS 166
GE QS LT+E+I+ E +KE K + L K+RGG V D +L
Sbjct: 592 GEGEAPQSLLTMEEIQSVEETQIKERKCL---LLKIRGGKQFVLQCDSDP-------ELV 641
Query: 167 QWRKRKRMLRDIWD---------PIMENSPK 188
QW+K LRD + P M+N P+
Sbjct: 642 QWKKE---LRDAYREAQQLVQRVPKMKNKPR 669
>pdb|3PSC|A Chain A, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|A Chain A, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|A Chain A, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
Length = 695
Score = 27.3 bits (59), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 41/91 (45%), Gaps = 22/91 (24%)
Query: 107 GEIRTLQSNLTLEQIREKEAQLVKEVKEMENKLAKLRGGVTLVKPEDRMAVEEMFLEKLS 166
GE QS LT+E+I+ E +KE K + L K+RGG V D +L
Sbjct: 592 GEGEAPQSLLTMEEIQSVEETQIKERKCL---LLKIRGGKQFVLQCDSDP-------ELV 641
Query: 167 QWRKRKRMLRDIWD---------PIMENSPK 188
QW+K LRD + P M+N P+
Sbjct: 642 QWKKE---LRDAYREAQQLVQRVPKMKNKPR 669
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.310 0.129 0.344
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,273,220
Number of Sequences: 62578
Number of extensions: 247905
Number of successful extensions: 1009
Number of sequences better than 100.0: 120
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 104
Number of HSP's that attempted gapping in prelim test: 966
Number of HSP's gapped (non-prelim): 139
length of query: 226
length of database: 14,973,337
effective HSP length: 95
effective length of query: 131
effective length of database: 9,028,427
effective search space: 1182723937
effective search space used: 1182723937
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 50 (23.9 bits)