BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027236
(226 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9FX64|HOP2_ARATH Homologous-pairing protein 2 homolog OS=Arabidopsis thaliana
GN=HOP2 PE=1 SV=1
Length = 226
Score = 353 bits (907), Expect = 4e-97, Method: Compositional matrix adjust.
Identities = 169/225 (75%), Positives = 204/225 (90%), Gaps = 1/225 (0%)
Query: 1 MAPKSDNTEAIVLNYVNEQNRPLNSQNVADALQKYNLKKAGIQKALDSLADNGKISFKEY 60
MAPKSDNTEAIVLN+VNEQN+PLN+QN ADALQK+NLKK +QKALDSLAD GKI+FKEY
Sbjct: 1 MAPKSDNTEAIVLNFVNEQNKPLNTQNAADALQKFNLKKTAVQKALDSLADAGKITFKEY 60
Query: 61 GKQKIYIARQDQFDIPNSEELNQMKEENAKLQEQLEEQRKAISKLEGEIRTLQSNLTLEQ 120
GKQKIYIARQDQF+IPNSEEL QMKE+NAKLQEQL+E++K IS +E EI++LQSNLTLE+
Sbjct: 61 GKQKIYIARQDQFEIPNSEELAQMKEDNAKLQEQLQEKKKTISDVESEIKSLQSNLTLEE 120
Query: 121 IREKEAQLVKEVKEMENKLAKLRGGVTLVKPEDRMAVEEMFLEKLSQWRKRKRMLRDIWD 180
I+EK+A+L KEVKEME KL KLR G+TLV+PED+ AVE+M+ +K++QWRKRKRM RDIWD
Sbjct: 121 IQEKDAKLRKEVKEMEEKLVKLREGITLVRPEDKKAVEDMYADKINQWRKRKRMFRDIWD 180
Query: 181 PIMENSPKNLKEFKEELGIEYDEDVGVSLQSFSDLLQRGKK-PKG 224
+ ENSPK++KE KEELGIEYDEDVG+S Q+++DL+Q GKK P+G
Sbjct: 181 TVTENSPKDVKELKEELGIEYDEDVGLSFQAYADLIQHGKKRPRG 225
>sp|Q91ZY6|HOP2_RAT Homologous-pairing protein 2 homolog OS=Rattus norvegicus
GN=Psmc3ip PE=1 SV=1
Length = 217
Score = 142 bits (357), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 80/201 (39%), Positives = 118/201 (58%), Gaps = 1/201 (0%)
Query: 10 AIVLNYVNEQNRPLNSQNVADALQK-YNLKKAGIQKALDSLADNGKISFKEYGKQKIYIA 68
IVL Y+ EQNRP ++Q+V LQK + L KA + KALD LA GKI K YGKQKIY A
Sbjct: 14 GIVLRYLQEQNRPYSAQDVFGNLQKEHGLGKAAVVKALDQLAQQGKIKEKTYGKQKIYFA 73
Query: 69 RQDQFDIPNSEELNQMKEENAKLQEQLEEQRKAISKLEGEIRTLQSNLTLEQIREKEAQL 128
QDQFD + +L+ + L +++ +++ +E E++ L S LT +++ + +L
Sbjct: 74 DQDQFDTVSDADLHSLDASIMALTAKVQGLQQSCRHMEAELKELTSALTTPEMQTEIQEL 133
Query: 129 VKEVKEMENKLAKLRGGVTLVKPEDRMAVEEMFLEKLSQWRKRKRMLRDIWDPIMENSPK 188
KE +L ++ V PE++ V + +WRKRKRM ++ D I+E PK
Sbjct: 134 KKECARYTERLKNIKAATNHVTPEEKEKVYRERQKYCKEWRKRKRMTTELCDAILEGYPK 193
Query: 189 NLKEFKEELGIEYDEDVGVSL 209
+ K+F EE+GIE DED V+L
Sbjct: 194 SKKQFFEEVGIETDEDHNVTL 214
>sp|O35047|HOP2_MOUSE Homologous-pairing protein 2 homolog OS=Mus musculus GN=Psmc3ip
PE=1 SV=1
Length = 217
Score = 138 bits (348), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 78/201 (38%), Positives = 119/201 (59%), Gaps = 1/201 (0%)
Query: 10 AIVLNYVNEQNRPLNSQNVADALQK-YNLKKAGIQKALDSLADNGKISFKEYGKQKIYIA 68
I+L Y+ EQNRP ++Q+V LQK + L KA + KALD LA GKI K YGKQKIY A
Sbjct: 14 GIILRYLQEQNRPYSAQDVFGNLQKEHGLGKAAVVKALDQLAQEGKIKEKTYGKQKIYFA 73
Query: 69 RQDQFDIPNSEELNQMKEENAKLQEQLEEQRKAISKLEGEIRTLQSNLTLEQIREKEAQL 128
Q+QFD + +L+ + L +++ +++ +E E++ L S LT +++++ +L
Sbjct: 74 DQNQFDTVSDADLHGLDASIVALTAKVQSLQQSCRHMEAELKELTSALTTPEMQKEIQEL 133
Query: 129 VKEVKEMENKLAKLRGGVTLVKPEDRMAVEEMFLEKLSQWRKRKRMLRDIWDPIMENSPK 188
KE + +L ++ V PE++ V + +WRKRKRM ++ D I+E PK
Sbjct: 134 KKECAQYTERLKNIKAATNHVTPEEKEKVYRDRQKYCKEWRKRKRMTTELCDAILEGYPK 193
Query: 189 NLKEFKEELGIEYDEDVGVSL 209
+ K+F EE+GIE DED V L
Sbjct: 194 SKKQFFEEVGIETDEDHNVLL 214
>sp|Q63ZL2|HOP2_XENLA Homologous-pairing protein 2 homolog OS=Xenopus laevis GN=psmc3ip
PE=2 SV=1
Length = 214
Score = 132 bits (331), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 76/204 (37%), Positives = 127/204 (62%), Gaps = 7/204 (3%)
Query: 10 AIVLNYVNEQNRPLNSQNVADALQK-YNLKKAGIQKALDSLADNGKISFKEYGKQKIYIA 68
+I+L Y+N+QNRP ++Q+V LQ+ + L K + K ++ LA GKI K YGKQKIY A
Sbjct: 11 SIILKYLNDQNRPYSTQDVFSNLQRDHGLGKTAVVKTMELLAQKGKIKEKVYGKQKIYFA 70
Query: 69 RQDQFDIPNSEELNQMKEENAKLQEQLEEQRKAISKLEGEIRTLQSNLTLEQIREKEAQL 128
Q+QF + EL + + +L +L+ +++ +LE E++ L S+LT E++ ++ + L
Sbjct: 71 DQEQFPSVSDSELKDLDAQVTELSSKLQSSQQSCRQLESELKDLTSSLTTEEMLKEVSCL 130
Query: 129 VKEVKEMENKLAKLRGGVTLVKPEDRMAVEEMFLEK---LSQWRKRKRMLRDIWDPIMEN 185
+E E+KL ++ V P ++ E+++ E+ +W+KRKRM DI+D I+E
Sbjct: 131 KEECDRHEHKLTNIKSATNHVTPAEK---EKVYGERKHFCKEWKKRKRMATDIFDAILEG 187
Query: 186 SPKNLKEFKEELGIEYDEDVGVSL 209
PK+ K+F EE+G+E DED V++
Sbjct: 188 YPKSKKQFFEEVGVETDEDCNVTV 211
>sp|Q9P2W1|HOP2_HUMAN Homologous-pairing protein 2 homolog OS=Homo sapiens GN=PSMC3IP
PE=1 SV=1
Length = 217
Score = 132 bits (331), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 77/200 (38%), Positives = 119/200 (59%), Gaps = 1/200 (0%)
Query: 11 IVLNYVNEQNRPLNSQNVADALQK-YNLKKAGIQKALDSLADNGKISFKEYGKQKIYIAR 69
I+L Y+ EQNRP +SQ+V LQ+ + L KA + K L+ LA GKI K YGKQKIY A
Sbjct: 15 ILLRYLQEQNRPYSSQDVFGNLQREHGLGKAVVVKTLEQLAQQGKIKEKMYGKQKIYFAD 74
Query: 70 QDQFDIPNSEELNQMKEENAKLQEQLEEQRKAISKLEGEIRTLQSNLTLEQIREKEAQLV 129
QDQFD+ + +L + + L +++ +++ +E E++ L S LT +++++ +L
Sbjct: 75 QDQFDMVSDADLQVLDGKIVALTAKVQSLQQSCRYMEAELKELSSALTTPEMQKEIQELK 134
Query: 130 KEVKEMENKLAKLRGGVTLVKPEDRMAVEEMFLEKLSQWRKRKRMLRDIWDPIMENSPKN 189
KE +L ++ V PE++ V + +WRKRKRM ++ D I+E PK+
Sbjct: 135 KECAGYRERLKNIKAATNHVTPEEKEQVYRERQKYCKEWRKRKRMATELSDAILEGYPKS 194
Query: 190 LKEFKEELGIEYDEDVGVSL 209
K+F EE+GIE DED V+L
Sbjct: 195 KKQFFEEVGIETDEDYNVTL 214
>sp|Q54UM1|HOP2_DICDI Homologous-pairing protein 2 homolog OS=Dictyostelium discoideum
GN=hop2 PE=3 SV=1
Length = 243
Score = 97.4 bits (241), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 69/214 (32%), Positives = 117/214 (54%), Gaps = 12/214 (5%)
Query: 4 KSDNTEAIVLNYVNEQNRPLNSQNVADALQKYNLKKAGIQKALDSLADNGKISFKEYGKQ 63
K D E +LN +N+ NRP N Q + A ++ K I K L SL + GK++FKEY K
Sbjct: 7 KKDEVEENILNLINKANRPYNYQMIEAAFP--SMGKTQIVKTLKSLGEQGKLTFKEYNKA 64
Query: 64 KIYIARQDQ--------FDIPNSEELNQMKEENAKLQEQLEEQRKAISKLEGEIRTLQSN 115
IY QD ++IP E ++ + + + QLE ++ + L + + L +
Sbjct: 65 IIYWRIQDTGPKLDEQGYEIP-QESIHDLNRKLDGINRQLEVEQDTLKSLISQSKQLNNQ 123
Query: 116 LTLEQIREKEAQLVKEVKEMENKLAKLRGGVTLVKPEDRMAVEEMFLEKLSQWRKRKRML 175
L+ EQI+++ QL E KE+E+KL + ++ +D+ +++ + S+W KRK +
Sbjct: 124 LSDEQIQKEVNQLSTENKELESKLLTFQTK-EIMSDKDKQRLDDTIKKARSEWVKRKALF 182
Query: 176 RDIWDPIMENSPKNLKEFKEELGIEYDEDVGVSL 209
RDI D ++E S K K+ +E++G E DED+ + +
Sbjct: 183 RDILDQVLERSNKKKKDLQEDIGWETDEDLKIQM 216
>sp|Q9HGK2|HOP2_SCHPO Homologous-pairing protein 2 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=meu13 PE=1 SV=1
Length = 216
Score = 80.5 bits (197), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 59/198 (29%), Positives = 107/198 (54%), Gaps = 3/198 (1%)
Query: 4 KSDNTEAIVLNYVNEQNRPLNSQNVADALQKYNLKKAGIQKALDSLADNGKISFKEYGKQ 63
K + E +V Y+ + NRP ++ +V+ L+ K+ QKAL+ L D G I K YGKQ
Sbjct: 13 KGEEAEKLVYEYLRKTNRPYSATDVSANLKNVVSKQVA-QKALEQLRDTGLIHGKLYGKQ 71
Query: 64 KIYIARQDQFDIPNSEELNQMKEENAKLQEQLEEQRKAISKLEGEIRTLQSNLTLEQIRE 123
+++ QD EEL +M+++ +L++++ + + E++ L ++L+ +IRE
Sbjct: 72 SVFVCLQDDLAAATPEELAEMEKQIQELKDEVSVVKTLYKEKCIELQALNNSLSPAEIRE 131
Query: 124 KEAQLVKEVKEMENKLAKLRGG-VTLVKPEDRMAVEEMFLEKLSQWRKRKRMLRDIWDPI 182
K + KE++E +KL LR G V + E ++ + + RK+M D+W +
Sbjct: 132 KIQSIDKEIEETSSKLESLRNGTVKQISKEAMQKTDKNYDFAKKGFSNRKKMFYDLWH-L 190
Query: 183 MENSPKNLKEFKEELGIE 200
+ +S +N K+ E+LG E
Sbjct: 191 ITDSLENPKQLWEKLGFE 208
>sp|A2A2Z9|AN18B_HUMAN Ankyrin repeat domain-containing protein 18B OS=Homo sapiens
GN=ANKRD18B PE=1 SV=1
Length = 1011
Score = 35.8 bits (81), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 28/40 (70%)
Query: 78 SEELNQMKEENAKLQEQLEEQRKAISKLEGEIRTLQSNLT 117
S++LN +K ENA+L +LE+++ +LE E+ +L SNL
Sbjct: 397 SQQLNDLKAENARLNSKLEKEKHNKERLEAEVESLHSNLA 436
>sp|P53187|HOP2_YEAST Homologous-pairing protein 2 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=HOP2 PE=1 SV=3
Length = 218
Score = 35.0 bits (79), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 49/200 (24%), Positives = 94/200 (47%), Gaps = 19/200 (9%)
Query: 4 KSDNTEAIVLNYVNEQNRPLNSQNVADALQKYNLKKAGIQKALDSLADNGKISFKEYGKQ 63
K E ++ +Y+ Q +P + ++ L + K KAL++L + +I K +GK
Sbjct: 15 KGSEAEQLIEDYLVSQYKPFSVNDIVQNLHN-KVTKTTATKALENLVNEKRIVSKTFGKI 73
Query: 64 KIYIARQDQFDIPNSEELNQMKEENA-KLQEQLEEQRKAISKLEGEIRTLQS---NLTLE 119
IY + +P++ + +Q E +L+ L E + S + + ++ N L
Sbjct: 74 IIYSCNEQDTALPSNIDPSQFDFETVLQLRNDLIELERDKSTAKDALDSVTKEPENEDLL 133
Query: 120 QIREKEAQLVKEVKEMENKLAKLR-----GGVTLVKPEDRMAVEEMFLEKLSQWRKRKRM 174
I E E E+K++E+KL L+ +VK R+ E+ L+K + KR ++
Sbjct: 134 TIIENEEN---ELKKIESKLQSLQDDWDPANDEIVK---RIMSEDTLLQK--EITKRSKI 185
Query: 175 LRDIWDPIMEN-SPKNLKEF 193
+++ I ++ PKN+ EF
Sbjct: 186 CKNLIATIKDSVCPKNMNEF 205
>sp|Q8IVF6|AN18A_HUMAN Ankyrin repeat domain-containing protein 18A OS=Homo sapiens
GN=ANKRD18A PE=2 SV=3
Length = 992
Score = 33.9 bits (76), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 28/40 (70%)
Query: 78 SEELNQMKEENAKLQEQLEEQRKAISKLEGEIRTLQSNLT 117
S++LN +K ENA+L +LE+++ +LE E+ +L S+L
Sbjct: 388 SQQLNDLKAENARLNSELEKEKHNKERLEAEVESLHSSLA 427
>sp|Q82EU9|CLPB1_STRAW Chaperone protein ClpB 1 OS=Streptomyces avermitilis (strain ATCC
31267 / DSM 46492 / JCM 5070 / NCIMB 12804 / NRRL 8165 /
MA-4680) GN=clpB1 PE=3 SV=1
Length = 870
Score = 33.1 bits (74), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 6/75 (8%)
Query: 70 QDQFDIPNSEELNQMKEENAKLQEQLEEQRKAISKLEGEIRTLQSNLTLEQIREKEAQLV 129
Q Q D EEL KE +A +E+LE+ R+ ++ E E+R L + EKE Q +
Sbjct: 418 QRQVDRLKMEELAIGKETDAASRERLEKLRRDLADKEEELRGLTARW------EKEKQSL 471
Query: 130 KEVKEMENKLAKLRG 144
V E++ KL +LRG
Sbjct: 472 NRVGELKEKLDELRG 486
>sp|P21619|LMNB2_MOUSE Lamin-B2 OS=Mus musculus GN=Lmnb2 PE=1 SV=2
Length = 596
Score = 32.7 bits (73), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 51/93 (54%), Gaps = 7/93 (7%)
Query: 77 NSEELNQMKEENAKLQEQLEEQRKAISKLEGEIRTLQSNL-TLEQIREK-EAQLVKEVKE 134
+ E +++ E K+Q +LEE RK+ K EGE+ Q + LE + + EA+L + +
Sbjct: 88 TARERARLQIEIGKVQAELEEARKSAKKREGELTVAQGRVKDLESLFHRSEAELATALSD 147
Query: 135 ---MENKLAKLRGGVTLVKPEDRMAVEEMFLEK 164
+E ++A+LR L K ED AV + LEK
Sbjct: 148 KQGLETEVAELRA--QLAKAEDGHAVAKKQLEK 178
>sp|Q12267|SMC4_YEAST Structural maintenance of chromosomes protein 4 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=SMC4 PE=1
SV=1
Length = 1418
Score = 32.3 bits (72), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 48/85 (56%), Gaps = 11/85 (12%)
Query: 69 RQDQFDIPNSEELNQMKEENAKLQEQLEEQRKAISKLEGEIRTLQSNLTL--EQIREKEA 126
R++ F + S+ +++M+EE KL++ + ISK E E +L S LTL +Q++E E
Sbjct: 861 RENNFRVA-SDTVHEMEEELKKLRDHEPDLESQISKAEMEADSLASELTLAEQQVKEAEM 919
Query: 127 QLVKEVKE-------MENKLAKLRG 144
VK V + M+N L +LRG
Sbjct: 920 AYVKAVSDKAQLNVVMKN-LERLRG 943
>sp|O14578|CTRO_HUMAN Citron Rho-interacting kinase OS=Homo sapiens GN=CIT PE=1 SV=2
Length = 2027
Score = 32.0 bits (71), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 54/106 (50%), Gaps = 11/106 (10%)
Query: 79 EELNQMKEENAKLQEQ---LEEQRKAISKLEGEIRTLQSNLTL--EQIREKEAQLVKEVK 133
E+LNQ+ E+NA+L Q L +Q S EI L+S + +I E+E QL + +
Sbjct: 951 EQLNQLTEDNAELNNQNFYLSKQLDEASGANDEIVQLRSEVDHLRREITEREMQLTSQKQ 1010
Query: 134 EMENKLAKLRGGVTLVKPE--DRMAVEEMFLEKLSQWRKRKRMLRD 177
ME L+ T+++ + D A+ + LEK QW + +L D
Sbjct: 1011 TME----ALKTTCTMLEEQVMDLEALNDELLEKERQWEAWRSVLGD 1052
>sp|Q3URD3|SLMAP_MOUSE Sarcolemmal membrane-associated protein OS=Mus musculus GN=Slmap
PE=1 SV=2
Length = 845
Score = 32.0 bits (71), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 39/60 (65%), Gaps = 1/60 (1%)
Query: 84 MKEENAKLQEQLEEQRKAISKLEGEIRTLQSNLTLEQIREKEAQLVKEVKEMENKLAKLR 143
++EE K++ +LE RKA S+ E EIR+LQS+ L + ++ E Q +E ++ +L KL+
Sbjct: 622 LQEELKKVRAELEGWRKAASEYENEIRSLQSSFQL-RCQQCEDQQREEATRLQGELEKLK 680
>sp|P49025|CTRO_MOUSE Citron Rho-interacting kinase OS=Mus musculus GN=Cit PE=1 SV=3
Length = 2055
Score = 32.0 bits (71), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 54/106 (50%), Gaps = 11/106 (10%)
Query: 79 EELNQMKEENAKLQEQ---LEEQRKAISKLEGEIRTLQSNLTL--EQIREKEAQLVKEVK 133
E+LNQ+ E+NA+L Q L +Q S EI L+S + +I E+E QL + +
Sbjct: 992 EQLNQLTEDNAELNNQNFYLSKQLDEASGANDEIVQLRSEVDHLRREITEREMQLTSQKQ 1051
Query: 134 EMENKLAKLRGGVTLVKPE--DRMAVEEMFLEKLSQWRKRKRMLRD 177
ME L+ T+++ + D A+ + LEK QW + +L D
Sbjct: 1052 TME----ALKTTCTMLEEQVLDLEALNDELLEKERQWEAWRSVLGD 1093
>sp|Q8IYA2|C144C_HUMAN Coiled-coil domain-containing protein 144C OS=Homo sapiens
GN=CCDC144C PE=2 SV=3
Length = 1237
Score = 31.2 bits (69), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 46/89 (51%), Gaps = 5/89 (5%)
Query: 26 QNVADALQKYNLKKAGIQKALDSLADNGKISFKEY-GKQKIYIARQDQFDIPNSEELNQM 84
N DAL + +L +Q+ L K + + Y K K YIA+Q+ + E L+Q+
Sbjct: 800 HNTRDALGRESLILERVQRDLSQTQCQKKETEQMYQSKLKKYIAKQESVE----ERLSQL 855
Query: 85 KEENAKLQEQLEEQRKAISKLEGEIRTLQ 113
+ EN L++QL++ K + E I T+Q
Sbjct: 856 QSENMLLRQQLDDVHKKANSQEKTISTIQ 884
>sp|Q4L7Z9|RF1_STAHJ Peptide chain release factor 1 OS=Staphylococcus haemolyticus
(strain JCSC1435) GN=prfA PE=3 SV=1
Length = 358
Score = 31.2 bits (69), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 45/79 (56%), Gaps = 13/79 (16%)
Query: 27 NVADALQKYNLKKAGIQKALDSLADNGKISFKEYGKQKIYIARQDQF--DIPNSEELNQM 84
N +D L+KY+ ++A +QK +D +++Y +K IA D+ + + EE+ +
Sbjct: 26 NDSDKLRKYSKEQADLQKTVD--------VYRDYKSKKEEIAEIDEMLNETEDKEEIEML 77
Query: 85 KEENAKLQE---QLEEQRK 100
KEE+A L+ +LEEQ K
Sbjct: 78 KEESASLKSAIPELEEQLK 96
>sp|Q8CJ96|RASF8_MOUSE Ras association domain-containing protein 8 OS=Mus musculus
GN=Rassf8 PE=1 SV=1
Length = 419
Score = 31.2 bits (69), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 48/76 (63%), Gaps = 12/76 (15%)
Query: 83 QMKEENAK-LQEQLEEQRKAISKLEG-------EIRTLQSNLTLEQIRE--KEAQLVKEV 132
Q+++EN K LQ+QLEE R+ ++ EG +I T++S L E++ +EAQ+ +E
Sbjct: 231 QIEQENEKQLQDQLEEIRQKVTDCEGRLKDYLAQIHTMESGLQAEKLHREVQEAQVNEE- 289
Query: 133 KEMENKLAKLRGGVTL 148
E++ K+ K++G + L
Sbjct: 290 -EVKGKIEKVKGEMDL 304
>sp|P44864|Y756_HAEIN Uncharacterized protein HI_0756 OS=Haemophilus influenzae (strain
ATCC 51907 / DSM 11121 / KW20 / Rd) GN=HI_0756 PE=4 SV=1
Length = 410
Score = 31.2 bits (69), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 36/52 (69%), Gaps = 2/52 (3%)
Query: 85 KEENAKLQEQLEEQRKAISKLEGEIRTLQSNLTLEQIREKEAQLVKEVKEME 136
K E AKLQ L++ I+ +EGE+ L++ ++L++IR++ A K++K++E
Sbjct: 52 KREQAKLQANLKKHESKINSVEGEL--LETEISLKEIRKQIADADKQLKQLE 101
>sp|P25386|USO1_YEAST Intracellular protein transport protein USO1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=USO1 PE=1
SV=2
Length = 1790
Score = 30.8 bits (68), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 79/180 (43%), Gaps = 19/180 (10%)
Query: 54 KISFKEYGKQ----KIYIARQDQFDIPNSEELNQMK-EENAKLQEQLEEQRKAISKLEGE 108
K+ F Y Q IY R P+ E +N++ EE KLQ Q +KL+GE
Sbjct: 693 KVYFSTYFIQLFNENIYRIRTALSHDPDEEPINKISFEEVEKLQRQ-------CTKLKGE 745
Query: 109 IRTLQSNL--TLEQIREKEAQLVKEVKEMENKLAKLRGGVTLVKPEDRMAVEEMFLEKLS 166
I +LQ+ T E + EK L E KE++ K L + +K + ++ E L+ +
Sbjct: 746 ITSLQTETESTHENLTEKLIALTNEHKELDEKYQILNSSHSSLK--ENFSILETELKNVR 803
Query: 167 QWRKRKRMLRDIWDPIMENSPKNLKEFKEELGIEYDEDVGVSLQ-SFSDLLQRGKKPKGG 225
LRD+ + + + L E+K I ED +L+ +L + KK + G
Sbjct: 804 DSLDEMTQLRDVLETKDKENQTALLEYKS--TIHKQEDSIKTLEKGLETILSQKKKAEDG 861
>sp|P22311|PU91_SCICO Puff II/9-1 protein OS=Sciara coprophila GN=II/9-1 PE=2 SV=1
Length = 286
Score = 30.8 bits (68), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 67/141 (47%), Gaps = 19/141 (13%)
Query: 2 APKSDNTEAIVLNYVNEQNRPLNSQNVADALQKYNLKKA--GIQKALDSLADNGKISFKE 59
A K DN +++N++N L +QN Q KKA + AL N ++ +
Sbjct: 63 AIKKDN------DFLNKENDALRAQNCELTAQLAKEKKAREAAENALCECQKNSELLKQT 116
Query: 60 YGKQKIYIARQDQFDIPNSEE-LNQMKEENAKLQEQLEEQRKAISKLEGEIRTLQSNLTL 118
+ K +A+ Q ++ N +E L K ENAKL +++EE I++L+ E L
Sbjct: 117 IEQLKKELAQTKQ-ELANCKEALANCKAENAKLLKKIEELNCTITQLQEE---------L 166
Query: 119 EQIREKEAQLVKEVKEMENKL 139
EQ R +E L ++ E KL
Sbjct: 167 EQCRARERDLQCQLDECNKKL 187
>sp|P08964|MYO1_YEAST Myosin-1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=MYO1 PE=1 SV=3
Length = 1928
Score = 30.8 bits (68), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 47/81 (58%), Gaps = 3/81 (3%)
Query: 70 QDQFDIPNSEELNQMKEENAKLQEQLEEQRKAISKLEGEIRTLQSNLTLEQIREKEAQLV 129
Q QFD SE+ +++ E ++ + LEE + I L+ IR ++ TLE++ K +L+
Sbjct: 930 QKQFDDLVSEK-DEISREKLEVAQNLEEAHQKIQGLQETIREREA--TLEKLHSKNNELI 986
Query: 130 KEVKEMENKLAKLRGGVTLVK 150
K++ ++ ++K + +L+K
Sbjct: 987 KQISDLNCDISKEQSSQSLIK 1007
>sp|Q28623|SLMAP_RABIT Sarcolemmal membrane-associated protein OS=Oryctolagus cuniculus
GN=SLMAP PE=1 SV=2
Length = 771
Score = 30.4 bits (67), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 40/64 (62%), Gaps = 1/64 (1%)
Query: 80 ELNQMKEENAKLQEQLEEQRKAISKLEGEIRTLQSNLTLEQIREKEAQLVKEVKEMENKL 139
++ ++EE K++ +LE RKA S+ E E+ +LQS+ L + ++ E Q +E ++ +L
Sbjct: 543 DIASLQEELKKVRAELERWRKAASEYEKEVTSLQSSFQL-RCQQCEDQQKEEATRLQGEL 601
Query: 140 AKLR 143
KLR
Sbjct: 602 EKLR 605
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.310 0.129 0.344
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 80,514,353
Number of Sequences: 539616
Number of extensions: 3333598
Number of successful extensions: 26259
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 1534
Number of HSP's that attempted gapping in prelim test: 22532
Number of HSP's gapped (non-prelim): 4709
length of query: 226
length of database: 191,569,459
effective HSP length: 113
effective length of query: 113
effective length of database: 130,592,851
effective search space: 14756992163
effective search space used: 14756992163
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 59 (27.3 bits)