Query 027236
Match_columns 226
No_of_seqs 112 out of 250
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 11:10:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027236.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027236hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1p6r_A Penicillinase repressor 97.8 0.00012 4.3E-09 50.7 8.7 64 6-70 8-72 (82)
2 2heo_A Z-DNA binding protein 1 97.8 9.1E-05 3.1E-09 49.9 7.1 53 6-61 9-61 (67)
3 2lnb_A Z-DNA-binding protein 1 97.7 7.5E-05 2.6E-09 51.5 5.9 57 6-69 18-74 (80)
4 3viq_B Mating-type switching p 97.7 0.001 3.4E-08 46.8 11.3 83 117-202 2-84 (85)
5 2fu4_A Ferric uptake regulatio 97.6 0.00015 5.2E-09 50.3 7.0 62 6-67 16-81 (83)
6 2oqg_A Possible transcriptiona 97.5 0.0016 5.6E-08 47.2 11.7 58 6-68 20-77 (114)
7 2htj_A P fimbrial regulatory p 97.5 0.00042 1.4E-08 47.9 7.4 59 9-71 2-62 (81)
8 3jth_A Transcription activator 97.4 0.00078 2.7E-08 47.9 8.8 58 6-68 22-79 (98)
9 2o03_A Probable zinc uptake re 97.4 0.00042 1.4E-08 52.5 7.0 62 6-67 10-74 (131)
10 2k4b_A Transcriptional regulat 97.4 0.00016 5.6E-09 52.6 4.4 62 6-68 34-96 (99)
11 1xmk_A Double-stranded RNA-spe 97.4 0.00066 2.3E-08 47.3 7.1 53 7-63 11-64 (79)
12 3cuo_A Uncharacterized HTH-typ 97.3 0.0025 8.5E-08 44.9 9.9 59 6-68 23-81 (99)
13 2fe3_A Peroxide operon regulat 97.3 0.00073 2.5E-08 52.1 7.3 64 6-69 21-87 (145)
14 3pqk_A Biofilm growth-associat 97.3 0.0007 2.4E-08 48.6 6.7 61 5-70 21-81 (102)
15 3f6o_A Probable transcriptiona 97.3 0.0021 7.2E-08 47.5 9.5 59 5-68 16-74 (118)
16 2g9w_A Conserved hypothetical 97.2 0.0074 2.5E-07 45.7 12.4 63 6-68 8-71 (138)
17 1r1u_A CZRA, repressor protein 97.2 0.0014 4.9E-08 47.5 7.5 58 6-68 25-82 (106)
18 3r0a_A Putative transcriptiona 97.2 0.0039 1.3E-07 46.6 10.1 60 6-68 25-90 (123)
19 2xig_A Ferric uptake regulatio 97.2 0.0013 4.4E-08 51.1 7.6 63 6-68 26-91 (150)
20 1qbj_A Protein (double-strande 97.1 0.0017 5.8E-08 45.4 7.2 59 6-68 9-69 (81)
21 3mwm_A ZUR, putative metal upt 97.1 0.0011 3.7E-08 50.9 6.7 64 6-69 13-79 (139)
22 1ucr_A Protein DSVD; dissimila 97.1 0.0013 4.3E-08 45.3 6.1 61 6-68 2-65 (78)
23 2kko_A Possible transcriptiona 97.1 0.0037 1.3E-07 45.5 9.1 58 6-68 24-81 (108)
24 1sd4_A Penicillinase repressor 97.1 0.036 1.2E-06 40.6 14.6 62 6-68 9-71 (126)
25 1mzb_A Ferric uptake regulatio 97.0 0.0011 3.8E-08 50.5 6.2 63 6-68 17-83 (136)
26 2w57_A Ferric uptake regulatio 97.0 0.0011 3.7E-08 51.5 6.1 63 6-68 16-82 (150)
27 3f6v_A Possible transcriptiona 96.9 0.0038 1.3E-07 48.5 8.4 58 6-68 57-114 (151)
28 1u2w_A CADC repressor, cadmium 96.9 0.0022 7.4E-08 47.8 6.5 59 6-68 41-99 (122)
29 2jsc_A Transcriptional regulat 96.9 0.002 6.9E-08 47.7 6.3 58 6-68 20-77 (118)
30 4ets_A Ferric uptake regulatio 96.9 0.0015 5.1E-08 51.5 5.7 64 6-69 32-100 (162)
31 1qgp_A Protein (double strande 96.8 0.004 1.4E-07 42.9 7.0 58 7-68 14-73 (77)
32 2xvc_A ESCRT-III, SSO0910; cel 96.8 0.003 1E-07 40.9 5.5 46 9-57 12-57 (59)
33 2jt1_A PEFI protein; solution 96.8 0.0034 1.2E-07 43.4 6.3 52 7-61 4-60 (77)
34 1okr_A MECI, methicillin resis 96.8 0.011 3.8E-07 43.3 9.4 62 6-68 9-71 (123)
35 1y0u_A Arsenical resistance op 96.7 0.0048 1.6E-07 43.7 7.0 56 6-71 30-85 (96)
36 1oyi_A Double-stranded RNA-bin 96.7 0.0023 7.7E-08 44.9 4.9 57 7-68 17-73 (82)
37 3eyy_A Putative iron uptake re 96.7 0.004 1.4E-07 48.0 6.9 62 6-68 18-82 (145)
38 1r1t_A Transcriptional repress 96.7 0.0064 2.2E-07 45.3 7.7 58 6-68 45-102 (122)
39 1ub9_A Hypothetical protein PH 96.7 0.024 8.1E-07 39.7 10.4 59 6-68 15-76 (100)
40 1sfx_A Conserved hypothetical 96.6 0.016 5.4E-07 40.9 9.2 58 6-67 19-77 (109)
41 2d1h_A ST1889, 109AA long hypo 96.6 0.018 6.2E-07 40.7 9.1 51 7-60 21-71 (109)
42 1lj9_A Transcriptional regulat 96.5 0.15 5E-06 37.8 15.3 112 7-143 29-142 (144)
43 1ku9_A Hypothetical protein MJ 96.5 0.16 5.5E-06 37.6 16.3 59 7-68 26-86 (152)
44 2qlz_A Transcription factor PF 96.4 0.016 5.6E-07 48.2 9.4 60 6-70 11-76 (232)
45 3deu_A Transcriptional regulat 96.4 0.022 7.4E-07 44.2 9.6 52 6-60 52-103 (166)
46 2zkz_A Transcriptional repress 96.4 0.016 5.4E-07 41.4 8.0 58 6-68 26-83 (99)
47 1go4_E MAD1 (mitotic arrest de 96.4 0.012 4.2E-07 42.5 7.1 70 77-146 10-98 (100)
48 1tbx_A ORF F-93, hypothetical 96.4 0.044 1.5E-06 38.6 10.2 62 6-68 7-69 (99)
49 2gxg_A 146AA long hypothetical 96.3 0.21 7.1E-06 36.9 14.4 49 7-60 37-85 (146)
50 2p4w_A Transcriptional regulat 96.3 0.042 1.4E-06 44.6 10.7 60 6-70 14-78 (202)
51 1q1h_A TFE, transcription fact 96.3 0.0097 3.3E-07 43.1 6.2 60 6-68 17-81 (110)
52 3kp7_A Transcriptional regulat 96.3 0.073 2.5E-06 40.0 11.5 47 7-58 38-84 (151)
53 4aik_A Transcriptional regulat 96.2 0.063 2.2E-06 41.0 11.0 52 7-61 31-82 (151)
54 2fbh_A Transcriptional regulat 96.2 0.22 7.4E-06 36.8 13.8 51 7-60 37-87 (146)
55 2qvo_A Uncharacterized protein 96.2 0.022 7.4E-07 40.2 7.7 59 7-68 12-73 (95)
56 3bpv_A Transcriptional regulat 96.2 0.049 1.7E-06 40.1 10.1 52 6-61 28-79 (138)
57 2eth_A Transcriptional regulat 96.1 0.2 7E-06 37.7 13.3 50 7-60 44-93 (154)
58 4hbl_A Transcriptional regulat 96.0 0.045 1.5E-06 41.3 9.3 50 7-60 41-90 (149)
59 3bro_A Transcriptional regulat 95.8 0.1 3.5E-06 38.5 10.4 51 7-60 34-85 (141)
60 2lkp_A Transcriptional regulat 95.7 0.05 1.7E-06 39.7 8.0 58 6-68 31-88 (119)
61 2x4h_A Hypothetical protein SS 95.7 0.19 6.4E-06 37.3 11.4 50 7-59 13-65 (139)
62 2vxz_A Pyrsv_GP04; viral prote 95.6 0.13 4.4E-06 39.8 10.1 63 1-68 1-67 (165)
63 3g3z_A NMB1585, transcriptiona 95.6 0.36 1.2E-05 35.8 12.7 50 7-60 31-80 (145)
64 3nrv_A Putative transcriptiona 95.5 0.071 2.4E-06 39.8 8.6 51 6-60 39-89 (148)
65 2hr3_A Probable transcriptiona 95.5 0.48 1.6E-05 35.0 13.4 59 7-68 35-96 (147)
66 2pg4_A Uncharacterized protein 95.5 0.069 2.4E-06 37.4 8.0 55 11-68 19-74 (95)
67 3u2r_A Regulatory protein MARR 95.3 0.13 4.4E-06 39.5 9.6 52 7-61 46-98 (168)
68 2nnn_A Probable transcriptiona 95.3 0.4 1.4E-05 35.0 12.1 50 7-60 38-87 (140)
69 2a61_A Transcriptional regulat 95.3 0.32 1.1E-05 35.8 11.6 50 7-60 33-82 (145)
70 1z7u_A Hypothetical protein EF 95.3 0.33 1.1E-05 35.0 11.3 58 7-68 22-82 (112)
71 3bj6_A Transcriptional regulat 95.3 0.61 2.1E-05 34.6 14.0 50 7-60 40-89 (152)
72 2fa5_A Transcriptional regulat 95.3 0.56 1.9E-05 35.3 13.1 49 8-60 50-98 (162)
73 3eco_A MEPR; mutlidrug efflux 95.3 0.59 2E-05 34.2 13.1 51 7-60 31-82 (139)
74 2bv6_A MGRA, HTH-type transcri 95.2 0.065 2.2E-06 39.7 7.3 58 7-68 37-97 (142)
75 3bdd_A Regulatory protein MARR 95.1 0.43 1.5E-05 34.9 11.5 58 7-68 31-91 (142)
76 2y75_A HTH-type transcriptiona 95.0 0.05 1.7E-06 40.4 6.2 56 9-68 11-68 (129)
77 3oop_A LIN2960 protein; protei 94.9 0.58 2E-05 34.5 12.0 51 6-60 36-86 (143)
78 2nyx_A Probable transcriptiona 94.9 0.76 2.6E-05 35.1 12.9 50 7-60 45-94 (168)
79 1s3j_A YUSO protein; structura 94.8 0.88 3E-05 33.8 13.6 50 7-60 37-86 (155)
80 2hzt_A Putative HTH-type trans 94.7 0.1 3.5E-06 37.5 7.0 58 7-68 14-74 (107)
81 3fm5_A Transcriptional regulat 94.7 0.56 1.9E-05 34.9 11.5 51 7-60 39-89 (150)
82 1on2_A Transcriptional regulat 94.6 0.46 1.6E-05 35.3 10.8 50 7-60 8-57 (142)
83 2dk5_A DNA-directed RNA polyme 94.6 0.091 3.1E-06 37.2 6.3 60 6-68 19-82 (91)
84 1r7j_A Conserved hypothetical 94.6 0.79 2.7E-05 32.3 11.4 48 11-68 12-59 (95)
85 3s2w_A Transcriptional regulat 94.5 1.1 3.7E-05 33.7 13.9 49 8-60 51-99 (159)
86 1yyv_A Putative transcriptiona 94.5 0.32 1.1E-05 36.4 9.6 57 8-68 36-95 (131)
87 3df8_A Possible HXLR family tr 94.5 0.4 1.4E-05 34.7 9.9 58 6-68 26-85 (111)
88 2frh_A SARA, staphylococcal ac 94.5 0.31 1E-05 35.8 9.4 51 7-60 37-88 (127)
89 3bja_A Transcriptional regulat 94.5 0.85 2.9E-05 33.1 11.9 50 7-60 33-82 (139)
90 3boq_A Transcriptional regulat 94.5 0.4 1.4E-05 36.1 10.3 51 7-60 47-97 (160)
91 2rdp_A Putative transcriptiona 94.4 1.1 3.6E-05 33.2 14.0 50 7-60 42-91 (150)
92 3na7_A HP0958; flagellar bioge 94.4 0.32 1.1E-05 40.7 10.3 63 81-143 13-80 (256)
93 3cjn_A Transcriptional regulat 94.4 1.2 4E-05 33.5 14.2 50 7-60 52-101 (162)
94 3u1d_A Uncharacterized protein 94.4 0.18 6.3E-06 39.1 8.0 61 6-68 28-97 (151)
95 3tgn_A ADC operon repressor AD 94.3 0.89 3.1E-05 33.4 11.8 58 6-68 37-97 (146)
96 3e6m_A MARR family transcripti 94.2 0.78 2.7E-05 34.6 11.4 49 8-60 54-102 (161)
97 3ech_A MEXR, multidrug resista 94.1 0.87 3E-05 33.5 11.3 50 7-60 37-86 (142)
98 1z91_A Organic hydroperoxide r 94.0 0.13 4.3E-06 38.3 6.4 50 7-60 40-89 (147)
99 1uly_A Hypothetical protein PH 94.0 1.8 6.2E-05 34.4 13.7 52 6-62 19-73 (192)
100 2fsw_A PG_0823 protein; alpha- 94.0 0.15 5.3E-06 36.5 6.5 56 9-68 27-85 (107)
101 3nqo_A MARR-family transcripti 93.9 1.8 6.1E-05 33.8 13.4 52 7-61 41-93 (189)
102 2qww_A Transcriptional regulat 93.9 0.86 3E-05 33.9 11.0 47 7-57 41-87 (154)
103 1mkm_A ICLR transcriptional re 93.8 0.097 3.3E-06 43.4 5.9 56 7-68 8-63 (249)
104 3hnw_A Uncharacterized protein 93.5 0.5 1.7E-05 36.0 9.0 56 85-142 74-129 (138)
105 2jee_A YIIU; FTSZ, septum, coi 93.5 0.76 2.6E-05 31.7 8.9 66 77-142 4-74 (81)
106 2esh_A Conserved hypothetical 93.2 0.54 1.9E-05 34.3 8.5 60 7-68 13-82 (118)
107 3b73_A PHIH1 repressor-like pr 93.2 0.22 7.7E-06 36.5 6.3 58 6-68 12-69 (111)
108 3mq0_A Transcriptional repress 93.2 0.11 3.7E-06 43.9 5.2 56 7-68 30-85 (275)
109 2xrn_A HTH-type transcriptiona 93.0 0.15 5.2E-06 42.1 5.7 55 9-68 8-62 (241)
110 3k2z_A LEXA repressor; winged 92.9 0.18 6.3E-06 40.2 5.9 46 10-58 12-57 (196)
111 3jw4_A Transcriptional regulat 92.8 1.2 4E-05 33.0 10.1 51 7-60 41-92 (148)
112 2yy0_A C-MYC-binding protein; 92.8 0.18 6.1E-06 32.1 4.6 37 75-111 15-51 (53)
113 2f2e_A PA1607; transcription f 92.8 0.42 1.4E-05 36.3 7.7 58 6-68 23-82 (146)
114 2pex_A Transcriptional regulat 92.8 0.24 8.3E-06 37.1 6.2 50 7-60 47-96 (153)
115 4ham_A LMO2241 protein; struct 92.8 1.9 6.4E-05 32.0 11.1 34 24-60 40-73 (134)
116 3f3x_A Transcriptional regulat 92.7 1.8 6.1E-05 31.8 11.0 49 8-61 38-86 (144)
117 3cuq_B Vacuolar protein-sortin 92.7 0.59 2E-05 38.3 8.8 60 6-69 153-212 (218)
118 2o0y_A Transcriptional regulat 92.6 0.09 3.1E-06 44.0 3.9 55 8-68 24-78 (260)
119 2g7u_A Transcriptional regulat 92.6 0.14 4.8E-06 42.7 5.0 55 7-68 14-68 (257)
120 2p5k_A Arginine repressor; DNA 92.6 0.59 2E-05 29.7 7.1 55 9-66 6-62 (64)
121 3k0l_A Repressor protein; heli 92.6 2.5 8.6E-05 31.7 13.6 50 7-60 46-95 (162)
122 2dk8_A DNA-directed RNA polyme 92.5 0.46 1.6E-05 32.9 6.7 63 6-70 13-75 (81)
123 1xn7_A Hypothetical protein YH 92.4 0.25 8.5E-06 33.9 5.2 45 10-58 5-49 (78)
124 1j5y_A Transcriptional regulat 92.3 0.26 9E-06 39.0 6.2 49 6-57 20-69 (187)
125 2p5v_A Transcriptional regulat 92.3 0.37 1.3E-05 37.0 6.8 48 6-57 9-56 (162)
126 1jgs_A Multiple antibiotic res 92.1 0.38 1.3E-05 35.2 6.5 50 7-60 34-83 (138)
127 2fbi_A Probable transcriptiona 92.1 2.5 8.5E-05 30.6 12.8 50 7-60 36-85 (142)
128 2k02_A Ferrous iron transport 92.0 0.23 7.9E-06 34.9 4.8 46 10-59 5-50 (87)
129 3a7p_A Autophagy protein 16; c 92.0 3.3 0.00011 31.9 11.6 71 85-172 67-137 (152)
130 3hsr_A HTH-type transcriptiona 92.0 0.96 3.3E-05 33.3 8.6 50 7-60 36-85 (140)
131 2wte_A CSA3; antiviral protein 92.0 0.29 1E-05 40.8 6.2 57 6-68 151-207 (244)
132 3l7w_A Putative uncharacterize 91.9 1.3 4.3E-05 31.8 9.0 60 7-68 9-73 (108)
133 3hnw_A Uncharacterized protein 91.8 1.2 4E-05 33.9 9.0 61 79-141 75-135 (138)
134 2qc0_A Uncharacterized protein 91.8 0.23 7.8E-06 43.9 5.6 54 10-68 300-354 (373)
135 3r4k_A Transcriptional regulat 91.6 0.082 2.8E-06 44.3 2.4 55 9-68 8-62 (260)
136 2hgc_A YJCQ protein; SR346, st 91.6 0.54 1.8E-05 34.0 6.4 65 11-84 9-73 (102)
137 3rkx_A Biotin-[acetyl-COA-carb 91.5 1.2 4E-05 38.6 9.7 68 8-81 4-72 (323)
138 3cdh_A Transcriptional regulat 91.3 0.31 1.1E-05 36.5 5.3 50 7-60 43-92 (155)
139 2cyy_A Putative HTH-type trans 91.3 0.91 3.1E-05 34.3 8.0 59 1-63 1-66 (151)
140 2b0l_A GTP-sensing transcripti 91.3 0.16 5.5E-06 36.5 3.4 42 24-68 45-86 (102)
141 2oa5_A Hypothetical protein BQ 91.0 3.4 0.00012 30.0 10.1 49 114-162 6-57 (110)
142 1bia_A BIRA bifunctional prote 90.8 1.4 4.6E-05 38.0 9.5 68 7-81 5-72 (321)
143 2ia2_A Putative transcriptiona 90.8 0.19 6.6E-06 42.0 4.0 54 8-68 22-75 (265)
144 3lay_A Zinc resistance-associa 90.8 2.3 7.9E-05 33.6 10.0 64 74-139 66-129 (175)
145 3tnu_B Keratin, type II cytosk 90.8 1.6 5.3E-05 32.6 8.7 61 77-142 34-94 (129)
146 2h09_A Transcriptional regulat 90.8 3.1 0.00011 31.1 10.6 46 10-59 43-88 (155)
147 2cfx_A HTH-type transcriptiona 90.6 0.57 2E-05 35.2 6.2 48 6-57 4-51 (144)
148 2fbk_A Transcriptional regulat 90.6 0.95 3.3E-05 35.0 7.7 51 7-60 69-121 (181)
149 2pn6_A ST1022, 150AA long hypo 90.5 0.87 3E-05 34.2 7.1 48 6-57 2-49 (150)
150 4b8x_A SCO5413, possible MARR- 90.4 2.5 8.7E-05 31.5 9.8 51 8-61 36-87 (147)
151 3qne_A Seryl-tRNA synthetase, 90.4 1.4 4.8E-05 40.3 9.6 65 78-142 32-97 (485)
152 1u5t_B Defective in vacuolar p 90.4 0.37 1.3E-05 38.0 5.0 60 6-69 98-164 (169)
153 1i1g_A Transcriptional regulat 90.4 0.64 2.2E-05 34.5 6.2 47 7-57 4-50 (141)
154 1ylf_A RRF2 family protein; st 90.3 0.48 1.7E-05 36.1 5.5 53 11-68 18-71 (149)
155 4a5n_A Uncharacterized HTH-typ 90.2 0.92 3.1E-05 34.1 7.0 56 9-68 28-86 (131)
156 3nmd_A CGMP dependent protein 90.1 0.93 3.2E-05 30.6 6.0 26 119-144 43-68 (72)
157 2dq0_A Seryl-tRNA synthetase; 90.1 1.8 6.3E-05 39.2 10.1 64 79-142 31-95 (455)
158 3s4r_A Vimentin; alpha-helix, 89.8 1.6 5.4E-05 30.9 7.5 38 78-115 8-45 (93)
159 3eyi_A Z-DNA-binding protein 1 89.7 0.45 1.5E-05 31.9 4.1 59 5-66 8-67 (72)
160 2hoe_A N-acetylglucosamine kin 89.3 0.16 5.4E-06 44.7 2.3 48 6-58 19-66 (380)
161 3t8r_A Staphylococcus aureus C 89.3 0.81 2.8E-05 34.7 6.1 46 11-59 15-62 (143)
162 2w25_A Probable transcriptiona 89.1 0.96 3.3E-05 34.0 6.4 47 6-56 6-52 (150)
163 2ia0_A Putative HTH-type trans 88.9 1.1 3.8E-05 34.8 6.8 48 6-57 16-63 (171)
164 3eqx_A FIC domain containing t 88.7 0.5 1.7E-05 41.8 5.1 54 11-68 301-354 (373)
165 3k69_A Putative transcription 88.7 0.58 2E-05 36.4 4.9 54 11-68 16-70 (162)
166 3dv8_A Transcriptional regulat 88.6 0.87 3E-05 35.7 6.1 56 7-68 147-209 (220)
167 3lwf_A LIN1550 protein, putati 88.5 1.6 5.4E-05 33.8 7.3 54 11-68 31-86 (159)
168 3tnu_A Keratin, type I cytoske 88.5 1.6 5.4E-05 32.7 7.1 60 78-142 37-96 (131)
169 3dfg_A Xcrecx, regulatory prot 88.5 0.83 2.8E-05 35.5 5.7 54 6-61 17-70 (162)
170 2dbb_A Putative HTH-type trans 88.2 1 3.5E-05 33.9 6.0 47 6-56 8-54 (151)
171 2cg4_A Regulatory protein ASNC 88.2 1.2 4.2E-05 33.5 6.4 48 6-57 7-54 (152)
172 2vn2_A DNAD, chromosome replic 88.0 1 3.6E-05 33.3 5.8 51 7-60 32-86 (128)
173 3tqn_A Transcriptional regulat 88.0 2.1 7.3E-05 30.8 7.4 51 6-59 12-67 (113)
174 3hrs_A Metalloregulator SCAR; 88.0 0.71 2.4E-05 37.3 5.2 49 9-61 8-56 (214)
175 1xma_A Predicted transcription 87.9 1.8 6.2E-05 32.9 7.3 61 6-68 40-110 (145)
176 2fxa_A Protease production reg 87.7 0.82 2.8E-05 36.6 5.4 50 7-60 48-97 (207)
177 3ryp_A Catabolite gene activat 87.7 1.2 4.3E-05 34.5 6.5 48 7-57 139-199 (210)
178 3nmd_A CGMP dependent protein 87.5 2.7 9.4E-05 28.3 6.9 36 80-115 34-69 (72)
179 4g6q_A Putative uncharacterize 87.5 1.4 4.8E-05 34.7 6.6 65 6-74 22-91 (182)
180 2eqb_B RAB guanine nucleotide 87.3 2.3 7.8E-05 30.3 6.8 59 79-139 5-63 (97)
181 1wle_A Seryl-tRNA synthetase; 87.2 2.2 7.5E-05 39.2 8.5 65 78-142 69-142 (501)
182 2e1c_A Putative HTH-type trans 86.7 2.7 9.2E-05 32.6 7.8 54 6-63 26-86 (171)
183 1sfu_A 34L protein; protein/Z- 86.5 2.5 8.4E-05 28.7 6.4 49 7-58 12-62 (75)
184 2ek5_A Predicted transcription 86.1 2.3 7.9E-05 31.5 6.8 51 6-59 7-62 (129)
185 2v79_A DNA replication protein 86.1 2.9 9.9E-05 31.4 7.4 59 7-68 32-99 (135)
186 4fx0_A Probable transcriptiona 85.9 1.1 3.9E-05 33.7 5.1 47 8-57 34-84 (148)
187 2dfs_A Myosin-5A; myosin-V, in 85.9 3.8 0.00013 41.2 10.1 23 120-142 1020-1042(1080)
188 1bja_A Transcription regulator 85.9 1.2 4E-05 31.8 4.7 51 7-63 16-67 (95)
189 3neu_A LIN1836 protein; struct 85.6 3.1 0.00011 30.5 7.3 52 6-60 16-72 (125)
190 4esb_A Transcriptional regulat 85.5 5.4 0.00018 28.8 8.5 60 7-68 9-76 (115)
191 1g6u_A Domain swapped dimer; d 85.5 4 0.00014 24.1 6.3 41 103-143 3-47 (48)
192 3tnu_B Keratin, type II cytosk 85.3 8 0.00027 28.6 9.5 22 92-113 35-56 (129)
193 1z6r_A MLC protein; transcript 85.3 1.3 4.5E-05 38.9 5.9 46 8-57 17-62 (406)
194 1w7p_D VPS36P, YLR417W; ESCRT- 85.3 2.4 8.1E-05 39.6 7.7 62 6-68 493-558 (566)
195 3oja_B Anopheles plasmodium-re 85.2 15 0.00053 33.5 13.4 65 79-143 456-529 (597)
196 3f8b_A Transcriptional regulat 84.8 6.1 0.00021 28.5 8.5 59 8-68 13-81 (116)
197 1z05_A Transcriptional regulat 84.7 1.3 4.6E-05 39.3 5.7 48 8-59 40-87 (429)
198 1v4r_A Transcriptional repress 84.1 0.15 5E-06 36.3 -0.8 38 19-59 31-69 (102)
199 2v71_A Nuclear distribution pr 83.9 6.3 0.00021 31.5 8.7 25 119-143 91-115 (189)
200 1p4x_A Staphylococcal accessor 83.7 1.5 5.1E-05 36.5 5.2 58 8-68 159-219 (250)
201 3kn1_A Golgi phosphoprotein 3; 83.5 6 0.0002 33.0 8.8 77 4-83 79-163 (249)
202 3tnu_A Keratin, type I cytoske 83.2 7.8 0.00027 28.8 8.6 21 92-112 37-57 (131)
203 3by6_A Predicted transcription 83.2 1.2 4.1E-05 32.9 4.0 33 24-59 37-69 (126)
204 1xd7_A YWNA; structural genomi 83.2 2.3 8E-05 32.0 5.8 52 11-68 13-64 (145)
205 2fmy_A COOA, carbon monoxide o 83.1 2.2 7.5E-05 33.4 5.9 57 7-68 138-208 (220)
206 1ses_A Seryl-tRNA synthetase; 82.9 2.2 7.7E-05 38.2 6.4 64 78-142 27-90 (421)
207 2dq3_A Seryl-tRNA synthetase; 82.9 1.8 6.3E-05 38.8 5.8 64 79-142 30-101 (425)
208 4esf_A PADR-like transcription 82.8 9.8 0.00034 27.5 8.9 58 9-68 13-78 (117)
209 3la7_A Global nitrogen regulat 82.6 4.1 0.00014 32.6 7.4 57 7-69 164-234 (243)
210 1hw1_A FADR, fatty acid metabo 82.4 4 0.00014 32.8 7.3 52 6-60 10-66 (239)
211 2pjp_A Selenocysteine-specific 82.3 5.1 0.00017 29.1 7.2 54 7-68 7-60 (121)
212 3kcc_A Catabolite gene activat 81.9 2.7 9.1E-05 34.2 6.1 56 7-68 189-257 (260)
213 3iwz_A CAP-like, catabolite ac 81.8 3 0.0001 32.7 6.2 49 7-58 159-220 (230)
214 3dkw_A DNR protein; CRP-FNR, H 81.7 3.8 0.00013 32.0 6.8 61 7-73 152-223 (227)
215 3eet_A Putative GNTR-family tr 81.5 4.4 0.00015 33.9 7.4 33 24-59 55-87 (272)
216 2co5_A Viral protein F93; vira 81.4 10 0.00035 26.8 8.3 59 9-68 11-73 (99)
217 3na7_A HP0958; flagellar bioge 81.2 21 0.00074 29.3 14.9 59 84-142 58-116 (256)
218 2v4h_A NF-kappa-B essential mo 81.0 8.3 0.00028 28.0 7.5 56 77-138 22-77 (110)
219 3i4p_A Transcriptional regulat 80.9 3.4 0.00012 31.5 6.0 48 6-57 2-49 (162)
220 2oz6_A Virulence factor regula 80.6 3.6 0.00012 31.6 6.2 49 7-58 136-197 (207)
221 2p8t_A Hypothetical protein PH 80.5 3.8 0.00013 33.1 6.3 37 20-59 28-64 (200)
222 1zyb_A Transcription regulator 80.5 5.1 0.00017 31.7 7.2 58 6-69 162-227 (232)
223 3fx3_A Cyclic nucleotide-bindi 80.4 3.5 0.00012 32.6 6.2 56 6-68 152-217 (237)
224 2zqm_A Prefoldin beta subunit 80.2 14 0.00046 26.4 10.1 36 81-116 15-50 (117)
225 3lss_A Seryl-tRNA synthetase; 80.0 8.8 0.0003 35.1 9.3 37 78-114 36-72 (484)
226 2zcw_A TTHA1359, transcription 80.0 5.4 0.00018 30.7 7.1 56 7-68 118-186 (202)
227 1wt6_A Myotonin-protein kinase 79.9 12 0.00041 25.6 9.0 45 91-144 29-73 (81)
228 3a7p_A Autophagy protein 16; c 79.6 13 0.00044 28.6 8.7 62 80-141 69-135 (152)
229 3a7o_A Autophagy protein 16; c 79.4 11 0.00039 25.0 7.4 57 85-143 17-73 (75)
230 3e97_A Transcriptional regulat 79.1 3.6 0.00012 32.4 5.8 42 21-68 174-215 (231)
231 2pi2_A Replication protein A 3 78.9 0.4 1.4E-05 40.5 0.0 48 6-55 206-255 (270)
232 1ft9_A Carbon monoxide oxidati 78.8 4.6 0.00016 31.6 6.4 48 7-57 134-195 (222)
233 1fx7_A Iron-dependent represso 78.8 23 0.0008 28.3 12.6 50 8-60 7-59 (230)
234 3f8m_A GNTR-family protein tra 78.7 3.4 0.00012 34.0 5.7 35 24-63 38-72 (248)
235 1d8j_A General transcription f 78.4 7.6 0.00026 26.7 6.3 52 9-61 13-70 (81)
236 3o0z_A RHO-associated protein 78.2 12 0.0004 29.3 8.2 56 86-141 55-115 (168)
237 2ocy_A RAB guanine nucleotide 77.8 21 0.00072 27.5 9.5 21 158-178 114-134 (154)
238 4dzn_A Coiled-coil peptide CC- 77.7 6.1 0.00021 21.6 4.5 22 90-111 6-27 (33)
239 3onj_A T-snare VTI1; helix, HA 77.6 15 0.0005 25.8 8.1 65 116-180 27-94 (97)
240 2v66_B Nuclear distribution pr 77.6 12 0.00039 27.3 7.5 58 87-144 4-63 (111)
241 3l09_A Putative transcriptiona 77.3 7.2 0.00025 32.8 7.3 61 8-68 24-88 (266)
242 3b02_A Transcriptional regulat 77.1 3 0.0001 32.1 4.7 56 7-68 111-179 (195)
243 1fxk_A Prefoldin; archaeal pro 76.8 17 0.00057 25.5 9.8 37 80-116 9-45 (107)
244 3e3v_A Regulatory protein RECX 76.8 4.4 0.00015 31.8 5.6 53 6-60 18-70 (177)
245 3c7j_A Transcriptional regulat 76.8 2.7 9.4E-05 34.3 4.5 42 19-63 46-87 (237)
246 3c18_A Nucleotidyltransferase- 76.5 4.7 0.00016 34.4 5.9 62 6-68 221-284 (290)
247 4ev0_A Transcription regulator 76.4 4.1 0.00014 31.6 5.3 56 7-68 141-203 (216)
248 3i00_A HIP-I, huntingtin-inter 76.0 6.3 0.00021 29.1 5.9 15 129-143 67-81 (120)
249 3d0s_A Transcriptional regulat 76.0 8 0.00027 30.2 7.1 48 7-57 148-209 (227)
250 2lw1_A ABC transporter ATP-bin 75.7 17 0.00058 25.0 8.3 55 85-139 21-79 (89)
251 3kfw_X Uncharacterized protein 75.4 7.2 0.00025 32.4 6.8 54 8-61 5-59 (247)
252 3bas_A Myosin heavy chain, str 75.3 18 0.0006 25.0 9.8 35 78-112 13-47 (89)
253 3d5l_A Regulatory protein RECX 75.2 5.7 0.00019 32.2 6.0 52 7-60 62-113 (221)
254 3edp_A LIN2111 protein; APC883 75.2 7.7 0.00026 31.5 6.9 51 6-59 12-67 (236)
255 3u1c_A Tropomyosin alpha-1 cha 75.2 19 0.00066 25.4 9.5 61 81-143 4-64 (101)
256 3elk_A Putative transcriptiona 75.1 16 0.00056 26.3 8.0 59 8-68 15-81 (117)
257 1ic2_A Tropomyosin alpha chain 74.9 14 0.00048 25.0 7.1 50 83-141 10-59 (81)
258 2gau_A Transcriptional regulat 74.2 8 0.00027 30.3 6.6 56 7-68 152-220 (232)
259 1p4x_A Staphylococcal accessor 74.0 19 0.00064 29.6 9.0 58 8-68 35-95 (250)
260 1m1j_C Fibrinogen gamma chain; 73.7 8.8 0.0003 34.3 7.3 104 13-135 26-131 (409)
261 3qph_A TRMB, A global transcri 73.3 0.86 2.9E-05 39.7 0.6 56 8-68 19-74 (342)
262 3vkg_A Dynein heavy chain, cyt 73.2 69 0.0024 36.1 15.2 62 78-141 2013-2074(3245)
263 1ci6_A Transcription factor AT 73.2 10 0.00034 24.6 5.7 17 121-137 42-58 (63)
264 3o0z_A RHO-associated protein 73.0 31 0.0011 26.9 10.6 55 87-143 7-61 (168)
265 2ke4_A CDC42-interacting prote 72.6 23 0.00077 25.1 9.8 71 71-141 6-80 (98)
266 2wv0_A YVOA, HTH-type transcri 72.6 4.9 0.00017 32.9 5.1 54 6-63 13-71 (243)
267 3e6c_C CPRK, cyclic nucleotide 72.3 7 0.00024 31.2 5.9 56 7-68 148-217 (250)
268 2w48_A Sorbitol operon regulat 72.3 9.7 0.00033 32.2 7.1 48 11-62 11-58 (315)
269 2gqq_A Leucine-responsive regu 71.7 0.57 1.9E-05 36.0 -0.9 48 6-57 12-59 (163)
270 3hhh_A Transcriptional regulat 71.6 25 0.00086 25.2 9.7 59 8-68 14-80 (116)
271 1g6u_A Domain swapped dimer; d 71.6 13 0.00045 21.9 7.5 28 77-104 18-45 (48)
272 3go5_A Multidomain protein wit 71.5 9.7 0.00033 32.2 6.8 55 6-63 223-283 (285)
273 2xub_A DNA-directed RNA polyme 71.5 61 0.0021 29.6 14.1 48 9-60 362-409 (534)
274 1a93_B MAX protein, coiled coi 71.4 10 0.00034 21.6 4.6 29 84-112 5-33 (34)
275 3ihu_A Transcriptional regulat 71.3 22 0.00075 28.1 8.7 40 20-62 37-76 (222)
276 2hs5_A Putative transcriptiona 71.2 4.6 0.00016 32.9 4.5 39 20-61 49-87 (239)
277 1x79_B RAB GTPase binding effe 71.2 27 0.00093 25.4 8.3 90 79-180 6-95 (112)
278 1yg2_A Gene activator APHA; vi 71.0 33 0.0011 26.3 14.0 58 9-68 4-71 (179)
279 3viq_A SWI5-dependent recombin 70.8 8.8 0.0003 28.4 5.6 14 189-202 96-109 (122)
280 4etp_A Kinesin-like protein KA 70.2 12 0.0004 33.3 7.3 57 80-145 4-60 (403)
281 3bwg_A Uncharacterized HTH-typ 70.1 6.2 0.00021 32.1 5.1 55 6-64 8-67 (239)
282 2lw1_A ABC transporter ATP-bin 69.4 6.8 0.00023 27.1 4.5 22 119-140 25-46 (89)
283 3lmm_A Uncharacterized protein 69.3 0.97 3.3E-05 42.3 0.0 58 7-68 516-573 (583)
284 3gp4_A Transcriptional regulat 69.0 31 0.001 25.7 8.5 33 19-51 37-74 (142)
285 3ri2_A Transcriptional regulat 68.3 28 0.00097 25.3 8.0 57 9-68 23-85 (123)
286 2bgc_A PRFA; bacterial infecti 68.2 14 0.00048 29.2 6.9 56 7-68 139-210 (238)
287 2yu3_A DNA-directed RNA polyme 68.0 19 0.00064 25.4 6.6 50 6-58 36-86 (95)
288 2yy0_A C-MYC-binding protein; 67.9 9.7 0.00033 23.9 4.5 21 120-140 30-50 (53)
289 1t2k_D Cyclic-AMP-dependent tr 67.9 17 0.00057 23.2 5.9 20 119-138 39-58 (61)
290 2jee_A YIIU; FTSZ, septum, coi 67.7 26 0.00091 23.9 8.9 45 123-172 27-71 (81)
291 2v71_A Nuclear distribution pr 67.4 45 0.0015 26.5 11.9 57 86-142 24-82 (189)
292 1o5l_A Transcriptional regulat 66.9 1.2 4E-05 35.1 0.0 58 7-70 142-206 (213)
293 3c1d_A Protein ORAA, regulator 66.7 13 0.00045 28.3 6.1 53 6-60 5-67 (159)
294 3cta_A Riboflavin kinase; stru 66.7 21 0.00073 28.5 7.7 61 5-68 5-70 (230)
295 2obp_A Putative DNA-binding pr 66.5 15 0.0005 26.0 5.8 49 8-59 17-70 (96)
296 3mq9_A Bone marrow stromal ant 66.3 20 0.00067 31.9 8.0 17 98-114 402-418 (471)
297 1u5t_A Appears to BE functiona 65.7 11 0.00039 31.0 5.8 59 6-68 166-225 (233)
298 2l0k_A Stage III sporulation p 65.4 12 0.00041 26.2 5.1 37 6-47 6-42 (93)
299 2wt7_A Proto-oncogene protein 65.1 19 0.00064 23.2 5.7 18 121-138 42-59 (63)
300 3gpv_A Transcriptional regulat 64.7 36 0.0012 25.5 8.2 32 19-50 51-87 (148)
301 1l8d_A DNA double-strand break 64.6 34 0.0012 24.1 13.1 64 80-143 11-84 (112)
302 4dnd_A Syntaxin-10, SYN10; str 64.6 41 0.0014 24.9 10.3 28 116-143 60-87 (130)
303 1zhc_A Hypothetical protein HP 64.2 14 0.00047 24.9 5.1 46 94-142 18-63 (76)
304 2jn6_A Protein CGL2762, transp 64.1 14 0.00046 25.3 5.3 50 1-54 1-52 (97)
305 2o0m_A Transcriptional regulat 64.0 1.4 4.9E-05 38.1 0.0 52 6-61 19-70 (345)
306 1hsj_A Fusion protein consisti 63.6 6 0.00021 35.2 4.1 58 8-68 405-465 (487)
307 3a7o_A Autophagy protein 16; c 63.6 20 0.00068 23.8 5.5 49 79-129 25-73 (75)
308 1yz7_A Probable translation in 63.4 4.4 0.00015 32.3 2.8 51 165-216 7-57 (188)
309 3ke2_A Uncharacterized protein 63.1 14 0.00047 27.1 5.1 59 6-68 18-80 (117)
310 2v4h_A NF-kappa-B essential mo 63.1 40 0.0014 24.4 8.5 59 81-139 40-106 (110)
311 3ra3_B P2F; coiled coil domain 62.9 11 0.00038 19.8 3.3 23 90-112 4-26 (28)
312 2di3_A Bacterial regulatory pr 62.8 7.2 0.00024 31.5 4.1 52 6-60 7-65 (239)
313 3dpl_C Cullin-5; ubiquitin, NE 62.7 73 0.0025 27.7 10.9 60 9-71 201-273 (382)
314 4dzn_A Coiled-coil peptide CC- 62.6 17 0.00057 19.8 4.8 25 81-105 4-28 (33)
315 1gd2_E Transcription factor PA 62.3 13 0.00045 24.7 4.6 22 121-142 48-69 (70)
316 1ses_A Seryl-tRNA synthetase; 61.9 39 0.0013 30.0 9.1 91 11-118 13-103 (421)
317 3mq7_A Bone marrow stromal ant 61.9 44 0.0015 24.4 8.7 19 123-141 71-89 (121)
318 3f2g_A Alkylmercury lyase; MER 61.7 8.9 0.0003 31.3 4.4 44 10-57 25-73 (220)
319 3cuq_A Vacuolar-sorting protei 61.4 20 0.00069 29.5 6.5 60 6-69 153-213 (234)
320 1fxk_A Prefoldin; archaeal pro 61.4 29 0.001 24.1 6.8 67 39-113 31-99 (107)
321 2c5k_T Syntaxin TLG1, T-snare 61.4 28 0.00096 24.4 6.5 54 81-139 38-91 (95)
322 1lq7_A Alpha3W; three helix bu 61.3 27 0.00094 21.9 8.4 45 95-146 4-48 (67)
323 1ldj_A Cullin homolog 1, CUL-1 61.3 67 0.0023 30.7 11.2 59 9-71 591-658 (760)
324 2dql_A PEX protein; circadian 61.1 42 0.0014 23.9 8.7 60 7-68 21-91 (115)
325 2qlz_A Transcription factor PF 61.0 13 0.00045 30.4 5.4 44 19-65 175-218 (232)
326 4dci_A Uncharacterized protein 60.9 53 0.0018 25.0 9.2 46 81-126 31-76 (150)
327 1gu4_A CAAT/enhancer binding p 60.8 24 0.00083 23.9 5.8 18 125-142 52-69 (78)
328 2a3d_A Protein (de novo three- 60.7 30 0.001 22.1 7.3 44 97-146 6-49 (73)
329 3u06_A Protein claret segregat 60.7 39 0.0013 30.0 8.8 56 81-145 5-60 (412)
330 3ghg_A Fibrinogen alpha chain; 60.7 77 0.0027 29.1 10.7 60 85-144 63-138 (562)
331 1go4_E MAD1 (mitotic arrest de 60.7 6.1 0.00021 28.3 2.8 42 61-106 54-95 (100)
332 3hh0_A Transcriptional regulat 60.1 48 0.0016 24.8 8.1 87 19-129 39-132 (146)
333 3viq_B Mating-type switching p 59.8 40 0.0014 23.3 7.3 55 90-144 5-69 (85)
334 3efg_A Protein SLYX homolog; x 59.5 21 0.00073 24.1 5.3 50 86-144 14-63 (78)
335 3u59_A Tropomyosin beta chain; 59.3 43 0.0015 23.5 8.7 61 81-143 4-64 (101)
336 1zxa_A CGMP-dependent protein 59.3 28 0.00097 22.9 5.7 36 80-115 19-54 (67)
337 3bas_A Myosin heavy chain, str 59.2 40 0.0014 23.1 10.4 31 81-111 23-53 (89)
338 3ic7_A Putative transcriptiona 59.0 4.4 0.00015 29.7 2.0 52 6-60 14-70 (126)
339 2lf0_A Uncharacterized protein 58.8 38 0.0013 24.8 6.8 47 91-137 8-57 (123)
340 4gkw_A Spindle assembly abnorm 58.4 32 0.0011 25.8 6.5 55 90-144 102-161 (167)
341 3ol1_A Vimentin; structural ge 58.3 48 0.0016 24.0 7.6 29 85-113 19-47 (119)
342 2dgc_A Protein (GCN4); basic d 58.2 20 0.00067 23.2 4.8 24 120-143 34-57 (63)
343 3u1c_A Tropomyosin alpha-1 cha 58.0 46 0.0016 23.4 8.8 58 83-142 13-70 (101)
344 3m9b_A Proteasome-associated A 57.7 26 0.00089 29.1 6.6 42 101-144 55-96 (251)
345 1ic2_A Tropomyosin alpha chain 57.5 40 0.0014 22.6 9.4 30 84-113 18-47 (81)
346 3sxy_A Transcriptional regulat 56.9 68 0.0023 25.0 12.9 39 20-61 33-71 (218)
347 1lwu_C Fibrinogen gamma chain; 56.4 19 0.00067 31.0 5.8 48 90-139 9-56 (323)
348 3lmm_A Uncharacterized protein 56.1 22 0.00074 33.1 6.5 47 8-58 431-482 (583)
349 3i00_A HIP-I, huntingtin-inter 56.1 27 0.00094 25.6 5.9 54 81-136 17-81 (120)
350 3t98_B Nucleoporin NUP58/NUP45 56.1 49 0.0017 23.1 10.9 71 84-162 10-82 (93)
351 1hjb_A Ccaat/enhancer binding 54.5 26 0.0009 24.2 5.2 28 117-144 51-78 (87)
352 2pms_C Pneumococcal surface pr 54.4 63 0.0022 23.9 12.4 53 119-172 64-116 (125)
353 3cve_A Homer protein homolog 1 54.2 46 0.0016 22.2 7.1 49 87-135 8-58 (72)
354 1i84_S Smooth muscle myosin he 54.2 44 0.0015 33.7 8.9 25 79-103 857-881 (1184)
355 1nkp_B MAX protein, MYC proto- 54.1 21 0.00072 24.1 4.7 19 124-142 62-80 (83)
356 4ani_A Protein GRPE; chaperone 54.0 34 0.0012 27.7 6.6 65 78-142 58-122 (213)
357 2wg5_A General control protein 54.0 14 0.00048 26.6 3.9 28 89-116 10-37 (109)
358 3u5c_K 40S ribosomal protein S 53.9 11 0.00038 27.1 3.3 59 7-68 6-67 (105)
359 1gax_A Valrs, valyl-tRNA synth 53.9 59 0.002 31.7 9.5 74 60-142 783-861 (862)
360 2qq9_A Diphtheria toxin repres 53.8 81 0.0028 25.0 14.4 50 8-60 7-59 (226)
361 3mq7_A Bone marrow stromal ant 53.6 62 0.0021 23.6 7.9 25 119-143 74-98 (121)
362 2e1n_A PEX, period extender; c 53.6 65 0.0022 23.8 8.1 60 7-68 34-103 (138)
363 1wi9_A Protein C20ORF116 homol 53.3 43 0.0015 22.3 5.9 59 10-72 10-68 (72)
364 4a6d_A Hydroxyindole O-methylt 53.3 37 0.0013 28.9 7.2 57 9-68 30-86 (353)
365 1vcs_A Vesicle transport throu 53.1 56 0.0019 22.9 8.5 53 120-172 35-87 (102)
366 3qh9_A Liprin-beta-2; coiled-c 53.1 51 0.0017 22.4 8.6 31 83-113 23-53 (81)
367 1kd8_A GABH AIV, GCN4 acid bas 52.8 30 0.001 19.8 4.5 17 85-101 7-23 (36)
368 3sja_C Golgi to ER traffic pro 52.7 46 0.0016 21.8 6.9 48 93-140 6-56 (65)
369 1stz_A Heat-inducible transcri 52.5 24 0.00083 30.4 5.9 56 6-63 16-75 (338)
370 3v86_A De novo design helix; c 52.1 24 0.00081 18.3 3.8 19 92-110 6-24 (27)
371 1dh3_A Transcription factor CR 52.0 25 0.00085 22.0 4.4 27 118-144 24-50 (55)
372 3uun_A Dystrophin; triple heli 51.7 55 0.0019 22.4 12.7 93 88-180 4-113 (119)
373 1gk7_A Vimentin; intermediate 51.4 33 0.0011 20.0 4.5 30 80-109 7-36 (39)
374 4dnd_A Syntaxin-10, SYN10; str 51.2 71 0.0024 23.6 7.8 14 125-138 114-127 (130)
375 4emc_A Monopolin complex subun 51.2 77 0.0026 25.1 8.0 33 82-114 23-55 (190)
376 3jsv_C NF-kappa-B essential mo 50.8 28 0.00096 24.5 4.8 11 84-94 21-31 (94)
377 1ci6_A Transcription factor AT 50.5 37 0.0013 21.8 5.2 24 86-109 30-53 (63)
378 1gk4_A Vimentin; intermediate 50.4 43 0.0015 22.7 5.8 16 122-137 32-47 (84)
379 3p9a_A DNA-packaging protein G 50.2 30 0.001 26.8 5.3 36 6-44 26-85 (162)
380 2hye_C Cullin-4A, CUL-4A; beta 49.9 34 0.0012 32.8 7.0 59 9-71 595-659 (759)
381 3htu_A Vacuolar protein-sortin 49.8 31 0.0011 23.4 4.9 52 6-57 8-67 (79)
382 3ez9_A Para; DNA binding, wing 49.7 22 0.00075 30.9 5.2 57 8-67 24-86 (403)
383 3mq9_A Bone marrow stromal ant 49.5 73 0.0025 28.1 8.8 24 91-114 402-425 (471)
384 1j1j_A Translin; testis/brain 49.3 1.1E+02 0.0036 25.0 13.1 85 121-212 66-152 (240)
385 3qao_A LMO0526 protein, MERR-l 49.2 1.1E+02 0.0036 25.0 9.4 70 19-115 38-112 (249)
386 2v9v_A Selenocysteine-specific 49.2 69 0.0024 22.8 10.8 58 8-68 3-60 (135)
387 3qh9_A Liprin-beta-2; coiled-c 49.2 60 0.002 22.1 6.5 25 86-110 19-43 (81)
388 1lrz_A FEMA, factor essential 49.1 63 0.0022 28.3 8.2 52 88-142 249-300 (426)
389 3m48_A General control protein 48.7 25 0.00086 19.8 3.5 23 120-142 4-26 (33)
390 2v7f_A RPS19, RPS19E SSU ribos 48.7 85 0.0029 23.7 10.2 38 22-59 67-115 (150)
391 2qyw_A Vesicle transport throu 48.5 68 0.0023 22.5 9.2 84 86-172 15-98 (102)
392 1yke_B RNA polymerase II holoe 48.5 45 0.0015 25.4 6.2 25 117-141 86-110 (151)
393 3tul_A Cell invasion protein S 48.4 88 0.003 23.8 7.7 57 86-142 69-126 (158)
394 1ik9_A DNA repair protein XRCC 48.4 81 0.0028 25.3 8.1 25 88-112 134-158 (213)
395 2ra5_A Putative transcriptiona 48.3 4.2 0.00014 33.4 0.3 33 24-59 42-74 (247)
396 2zqm_A Prefoldin beta subunit 48.2 68 0.0023 22.5 9.0 64 39-110 36-101 (117)
397 2zih_A Vacuolar protein sortin 47.9 69 0.0023 27.9 7.9 55 4-59 138-200 (347)
398 3trt_A Vimentin; cytoskeleton, 47.9 56 0.0019 21.4 7.0 22 122-143 55-76 (77)
399 1kd8_B GABH BLL, GCN4 acid bas 47.8 38 0.0013 19.4 5.6 22 83-104 5-26 (36)
400 3htk_A Structural maintenance 47.4 49 0.0017 20.6 7.0 52 80-140 6-57 (60)
401 3oa7_A Head morphogenesis prot 47.4 53 0.0018 26.2 6.5 38 119-156 47-85 (206)
402 1p9i_A Cortexillin I/GCN4 hybr 47.2 24 0.00084 18.9 3.1 22 121-142 4-25 (31)
403 3m9b_A Proteasome-associated A 46.9 25 0.00086 29.2 4.8 36 81-116 56-98 (251)
404 3sjb_C Golgi to ER traffic pro 46.7 72 0.0025 22.3 6.6 51 93-143 23-76 (93)
405 2v66_B Nuclear distribution pr 46.4 81 0.0028 22.8 8.0 35 102-138 37-71 (111)
406 1s1c_X RHO-associated, coiled- 46.0 63 0.0022 21.4 7.6 30 84-113 4-33 (71)
407 2dgc_A Protein (GCN4); basic d 45.9 32 0.0011 22.2 4.3 11 120-130 48-58 (63)
408 3q8t_A Beclin-1; autophagy, AT 45.3 75 0.0026 22.1 7.8 16 79-94 4-19 (96)
409 2oto_A M protein; helical coil 45.1 96 0.0033 23.3 7.7 24 120-143 54-77 (155)
410 1tc3_C Protein (TC3 transposas 45.0 29 0.00099 19.5 3.8 41 6-52 8-48 (51)
411 3o2p_E Cell division control p 44.9 44 0.0015 23.0 5.2 57 9-68 25-86 (88)
412 4etp_A Kinesin-like protein KA 44.8 39 0.0013 29.8 6.1 36 78-113 9-44 (403)
413 3swy_A Cyclic nucleotide-gated 44.2 40 0.0014 20.5 4.2 20 94-113 6-25 (46)
414 2l5g_B Putative uncharacterize 44.2 49 0.0017 19.7 5.0 26 82-107 12-37 (42)
415 1ufm_A COP9 complex subunit 4; 44.1 17 0.00057 24.9 2.8 58 11-68 16-74 (84)
416 2k9s_A Arabinose operon regula 44.1 50 0.0017 22.6 5.6 41 8-51 4-46 (107)
417 3mn2_A Probable ARAC family tr 44.1 49 0.0017 22.7 5.5 40 8-50 3-43 (108)
418 2krc_A DNA-directed RNA polyme 43.7 16 0.00056 25.9 2.8 50 10-59 17-71 (99)
419 1gd2_E Transcription factor PA 43.6 39 0.0013 22.3 4.5 39 95-135 31-69 (70)
420 3c3g_A Alpha/beta peptide with 43.2 43 0.0015 18.7 4.2 13 99-111 13-25 (33)
421 3oio_A Transcriptional regulat 43.1 53 0.0018 22.7 5.6 42 6-50 6-48 (113)
422 3ol1_A Vimentin; structural ge 42.7 93 0.0032 22.4 8.5 36 79-114 20-55 (119)
423 3vbb_A Seryl-tRNA synthetase, 42.4 39 0.0013 31.1 5.8 65 79-143 34-132 (522)
424 1dh3_A Transcription factor CR 42.2 61 0.0021 20.2 5.2 29 86-114 22-50 (55)
425 2e7s_A RAB guanine nucleotide 42.2 7.4 0.00025 29.3 0.8 17 123-139 67-83 (135)
426 2w83_C C-JUN-amino-terminal ki 42.0 77 0.0026 21.3 6.2 25 119-143 33-57 (77)
427 1wle_A Seryl-tRNA synthetase; 41.3 1.6E+02 0.0056 26.7 9.8 63 79-143 77-150 (501)
428 4h22_A Leucine-rich repeat fli 41.0 95 0.0033 22.1 8.5 31 83-113 20-50 (103)
429 3onj_A T-snare VTI1; helix, HA 40.9 88 0.003 21.7 7.6 62 83-144 31-94 (97)
430 2zvf_A Alanyl-tRNA synthetase; 40.6 50 0.0017 24.9 5.5 24 120-143 29-52 (171)
431 2pnv_A Small conductance calci 40.5 48 0.0016 19.8 4.1 21 122-142 15-35 (43)
432 2xzm_8 RPS25E,; ribosome, tran 40.4 47 0.0016 25.1 5.0 49 21-72 62-111 (143)
433 1ez3_A Syntaxin-1A; three heli 40.1 97 0.0033 21.9 9.3 64 80-143 6-74 (127)
434 3cvf_A Homer-3, homer protein 39.9 85 0.0029 21.2 6.5 14 120-133 49-62 (79)
435 1uo4_A General control protein 39.9 45 0.0015 18.8 3.6 21 121-141 6-26 (34)
436 3swf_A CGMP-gated cation chann 39.6 83 0.0029 21.0 5.7 47 91-142 5-51 (74)
437 2bni_A General control protein 39.6 38 0.0013 19.1 3.3 23 91-113 6-28 (34)
438 3er9_B Poly(A) polymerase cata 39.3 9.4 0.00032 34.0 1.1 48 6-53 72-119 (479)
439 1t2k_D Cyclic-AMP-dependent tr 39.1 71 0.0024 20.1 5.5 31 83-113 26-56 (61)
440 2nrj_A HBL B protein; enteroto 38.4 89 0.003 26.9 7.3 103 79-183 226-335 (346)
441 1i84_S Smooth muscle myosin he 38.1 42 0.0014 33.8 5.8 17 86-102 878-894 (1184)
442 3m0d_C TNF receptor-associated 37.8 79 0.0027 20.3 6.1 54 81-136 8-61 (65)
443 3lsg_A Two-component response 37.7 75 0.0025 21.4 5.6 41 8-51 3-45 (103)
444 1wt6_A Myotonin-protein kinase 37.6 95 0.0032 21.1 5.9 21 123-143 45-65 (81)
445 3oou_A LIN2118 protein; protei 37.3 71 0.0024 21.8 5.5 42 7-51 5-47 (108)
446 2eqb_B RAB guanine nucleotide 37.1 1.1E+02 0.0037 21.6 8.7 57 86-144 5-61 (97)
447 3m91_A Proteasome-associated A 37.0 74 0.0025 19.7 6.0 28 81-108 11-38 (51)
448 3to7_A Histone acetyltransfera 36.9 37 0.0013 28.6 4.3 52 9-68 195-246 (276)
449 2oa5_A Hypothetical protein BQ 36.8 1.2E+02 0.004 21.9 9.0 68 90-159 12-90 (110)
450 1jko_C HIN recombinase, DNA-in 36.4 54 0.0019 18.6 4.1 38 6-49 8-45 (52)
451 1dip_A Delta-sleep-inducing pe 36.3 37 0.0013 22.7 3.4 28 79-106 15-42 (78)
452 2xzm_7 Plectin/S10 domain cont 36.1 65 0.0022 24.8 5.2 58 8-68 8-67 (162)
453 2qyw_A Vesicle transport throu 36.0 1.1E+02 0.0038 21.4 7.8 52 85-139 48-101 (102)
454 4akg_A Glutathione S-transfera 35.8 2.5E+02 0.0087 31.1 11.5 79 83-166 2143-2226(2695)
455 4b4t_O 26S proteasome regulato 35.7 41 0.0014 29.4 4.8 72 19-96 304-378 (393)
456 2zfw_A PEX; five alpha-helices 35.7 68 0.0023 24.1 5.4 61 10-72 47-117 (148)
457 1jcd_A Major outer membrane li 35.7 79 0.0027 19.6 7.4 18 85-102 10-27 (52)
458 3t72_q RNA polymerase sigma fa 35.6 55 0.0019 22.8 4.6 35 8-45 25-59 (99)
459 1jhf_A LEXA repressor; LEXA SO 35.4 74 0.0025 24.5 5.9 47 9-58 12-59 (202)
460 2aze_B Transcription factor E2 35.4 61 0.0021 23.1 4.8 36 80-115 7-42 (106)
461 1nkp_A C-MYC, MYC proto-oncoge 35.4 90 0.0031 21.3 5.6 29 6-34 2-30 (88)
462 1nkp_B MAX protein, MYC proto- 35.0 45 0.0016 22.3 3.9 31 82-112 50-80 (83)
463 2c5k_T Syntaxin TLG1, T-snare 34.9 1.1E+02 0.0039 21.2 8.5 55 116-171 36-94 (95)
464 3v2d_2 50S ribosomal protein L 34.7 98 0.0033 20.4 7.7 53 115-171 15-67 (72)
465 4fi5_A Nucleoprotein; structur 34.7 1.3E+02 0.0044 21.7 7.7 25 81-105 24-48 (113)
466 3mkl_A HTH-type transcriptiona 34.4 77 0.0026 22.1 5.4 40 6-48 6-46 (120)
467 2kdo_A Ribosome maturation pro 34.4 77 0.0026 26.3 5.9 46 6-51 107-165 (252)
468 3ghg_A Fibrinogen alpha chain; 34.3 2.8E+02 0.0095 25.5 10.0 16 147-162 171-186 (562)
469 1vq8_V 50S ribosomal protein L 34.3 98 0.0034 20.3 8.5 54 115-171 11-64 (71)
470 1qzv_F Plant photosystem I: su 34.2 17 0.00059 27.2 1.7 20 127-146 17-36 (154)
471 1tw3_A COMT, carminomycin 4-O- 34.2 72 0.0025 26.7 6.0 46 11-61 43-88 (360)
472 2doa_A RNA polymerase II elong 33.4 43 0.0015 24.0 3.6 72 7-87 12-93 (104)
473 3tdu_C Cullin-1, CUL-1; E2:E3, 33.4 96 0.0033 20.7 5.3 57 9-67 13-74 (77)
474 2zjr_V 50S ribosomal protein L 33.3 98 0.0034 20.0 8.1 53 115-171 8-60 (67)
475 2efr_A General control protein 33.3 1.6E+02 0.0055 22.4 8.7 66 78-143 48-118 (155)
476 2qby_A CDC6 homolog 1, cell di 33.2 94 0.0032 25.7 6.6 65 10-74 289-366 (386)
477 4a0z_A Transcription factor FA 33.2 42 0.0014 26.4 4.0 45 6-54 11-55 (190)
478 3ljm_A Coil Ser L9C; de novo d 33.2 59 0.002 17.4 4.4 20 124-143 9-28 (31)
479 1jnm_A Proto-oncogene C-JUN; B 33.1 71 0.0024 20.2 4.4 13 122-134 42-54 (62)
480 3qne_A Seryl-tRNA synthetase, 33.0 65 0.0022 29.3 5.7 63 79-143 40-105 (485)
481 1sig_A Sigma70, RNA polymerase 33.0 2.2E+02 0.0074 23.9 10.7 54 149-205 152-206 (339)
482 1zk8_A Transcriptional regulat 32.8 38 0.0013 24.8 3.6 15 1-15 2-16 (183)
483 2wt7_A Proto-oncogene protein 32.6 96 0.0033 19.7 5.8 27 85-111 29-55 (63)
484 3oja_A Leucine-rich immune mol 32.4 2.6E+02 0.0088 24.5 14.1 28 89-116 370-397 (487)
485 3u5c_Z RP45, S31, YS23, 40S ri 32.1 50 0.0017 23.8 3.8 47 20-69 57-104 (108)
486 2oxj_A Hybrid alpha/beta pepti 32.1 71 0.0024 18.0 5.0 10 85-94 7-16 (34)
487 1tty_A Sigma-A, RNA polymerase 32.1 66 0.0022 21.3 4.4 36 10-48 26-61 (87)
488 3dp7_A SAM-dependent methyltra 32.1 73 0.0025 27.0 5.7 44 12-58 40-83 (363)
489 1iuy_A Cullin-3 homologue; win 31.9 75 0.0026 22.0 4.7 53 7-60 26-83 (92)
490 3kin_B Kinesin heavy chain; mo 31.7 94 0.0032 22.4 5.4 20 91-110 94-113 (117)
491 3trt_A Vimentin; cytoskeleton, 31.7 82 0.0028 20.6 4.8 17 119-135 59-75 (77)
492 4a17_U RPL35, 60S ribosomal pr 31.6 1.5E+02 0.0052 21.7 7.3 53 116-171 13-65 (124)
493 2hy6_A General control protein 31.6 73 0.0025 17.9 3.6 19 121-139 6-24 (34)
494 2lf0_A Uncharacterized protein 31.6 29 0.00097 25.5 2.4 46 98-143 8-56 (123)
495 3vlc_E Golgi to ER traffic pro 31.5 60 0.0021 22.8 4.1 47 93-139 30-79 (94)
496 2wbm_A MTHSBDS, ribosome matur 31.5 76 0.0026 26.3 5.4 44 6-49 118-174 (252)
497 1ldd_A APC2WHB, anaphase promo 31.4 46 0.0016 22.3 3.3 29 37-65 45-73 (74)
498 1q06_A Transcriptional regulat 31.1 1.5E+02 0.0052 21.5 8.8 70 20-110 36-110 (135)
499 1x79_B RAB GTPase binding effe 31.0 1.5E+02 0.0051 21.4 8.5 65 79-143 6-72 (112)
500 3axj_A GM27569P, translin; tra 31.0 2.2E+02 0.0074 23.3 12.4 131 78-217 28-158 (249)
No 1
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=97.81 E-value=0.00012 Score=50.65 Aligned_cols=64 Identities=20% Similarity=0.313 Sum_probs=56.8
Q ss_pred chHHHHHHHHHHhcCCCCcHHHHHHHHhc-ccccHHHHHHHHHHHHHcCCcceeecCceeEEEeec
Q 027236 6 DNTEAIVLNYVNEQNRPLNSQNVADALQK-YNLKKAGIQKALDSLADNGKISFKEYGKQKIYIARQ 70 (226)
Q Consensus 6 ~ea~~~Il~y~~~~nrPys~~di~~~l~~-~~v~K~~v~k~L~~Lv~~g~i~~K~~GK~kiY~~~Q 70 (226)
...+..||.++.. +.|.++.+|.+.++. .+++.++|...|+.|++.|+|.....|...+|.+..
T Consensus 8 t~~e~~vL~~L~~-~~~~t~~ei~~~l~~~~~~s~~Tv~~~l~rL~~kGlv~r~~~gr~~~y~~~~ 72 (82)
T 1p6r_A 8 SDAELEVMKVIWK-HSSINTNEVIKELSKTSTWSPKTIQTMLLRLIKKGALNHHKEGRVFVYTPNI 72 (82)
T ss_dssp CHHHHHHHHHHHT-SSSEEHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEESC
T ss_pred CHHHHHHHHHHHc-CCCCCHHHHHHHHhhcCCccHHHHHHHHHHHHHCCCeEEEecCCEEEEEeec
Confidence 5788899999987 789999999998864 258999999999999999999999999999998743
No 2
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=97.77 E-value=9.1e-05 Score=49.89 Aligned_cols=53 Identities=17% Similarity=0.267 Sum_probs=46.8
Q ss_pred chHHHHHHHHHHhcCCCCcHHHHHHHHhcccccHHHHHHHHHHHHHcCCcceeecC
Q 027236 6 DNTEAIVLNYVNEQNRPLNSQNVADALQKYNLKKAGIQKALDSLADNGKISFKEYG 61 (226)
Q Consensus 6 ~ea~~~Il~y~~~~nrPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~K~~G 61 (226)
++.+..||++|....+|.|+.+|...+ ++++++|.+.|..|.+.|.|....-|
T Consensus 9 ~~~~~~IL~~L~~~~~~~s~~eLA~~l---glsr~tv~~~l~~L~~~G~I~~~~~G 61 (67)
T 2heo_A 9 DNLEQKILQVLSDDGGPVAIFQLVKKC---QVPKKTLNQVLYRLKKEDRVSSPSPK 61 (67)
T ss_dssp CHHHHHHHHHHHHHCSCEEHHHHHHHH---CSCHHHHHHHHHHHHHTTSEEEEETT
T ss_pred cHHHHHHHHHHHHcCCCcCHHHHHHHH---CcCHHHHHHHHHHHHHCCcEecCCCc
Confidence 567889999999877899999999988 89999999999999999998765444
No 3
>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}
Probab=97.71 E-value=7.5e-05 Score=51.47 Aligned_cols=57 Identities=14% Similarity=0.197 Sum_probs=52.2
Q ss_pred chHHHHHHHHHHhcCCCCcHHHHHHHHhcccccHHHHHHHHHHHHHcCCcceeecCceeEEEee
Q 027236 6 DNTEAIVLNYVNEQNRPLNSQNVADALQKYNLKKAGIQKALDSLADNGKISFKEYGKQKIYIAR 69 (226)
Q Consensus 6 ~ea~~~Il~y~~~~nrPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~K~~GK~kiY~~~ 69 (226)
++.+++||+.|.+...|.++.+|...+ ||.|-.|-++|..|-.+|+|.+- ...||+.
T Consensus 18 ~d~eekVLe~LkeaG~PlkageIae~~---GvdKKeVdKaik~LKkEgkI~SP----kRCyw~~ 74 (80)
T 2lnb_A 18 GHLEQRILQVLTEAGSPVKLAQLVKEC---QAPKRELNQVLYRMKKELKVSLT----SPATWCL 74 (80)
T ss_dssp HHHHHHHHHHHHHHTSCEEHHHHHHHH---TSCHHHHHHHHHHHHHTTSEEEE----ETTEEEE
T ss_pred chHHHHHHHHHHHcCCCCCHHHHHHHH---CCCHHHHHHHHHHHHHcCCccCC----CCceeeC
Confidence 788999999999999999999999988 89999999999999999998876 5677774
No 4
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=97.67 E-value=0.001 Score=46.79 Aligned_cols=83 Identities=10% Similarity=0.167 Sum_probs=66.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Q 027236 117 TLEQIREKEAQLVKEVKEMENKLAKLRGGVTLVKPEDRMAVEEMFLEKLSQWRKRKRMLRDIWDPIMENSPKNLKEFKEE 196 (226)
Q Consensus 117 t~~el~~~i~~L~~e~~~l~~kL~~l~~~~~~vs~ee~~~~~~~~~~~~~~w~kRkri~~~i~~~i~e~~~~~~k~l~e~ 196 (226)
+.+.|...|..|+.++..++..+..+.+.-...+|+ .+.+.|......|..=|-++-.+++.|++.-+...++++++
T Consensus 2 ~~~~L~~~i~~L~~q~~~L~~ei~~~~a~L~~~~~~---~~~~~hI~~Lh~YNeiKD~gq~L~g~iA~~rgv~~~~v~~e 78 (85)
T 3viq_B 2 EKSQLESRVHLLEQQKEQLESSLQDALAKLKNRDAK---QTVQKHIDLLHTYNEIRDIALGMIGKVAEHEKCTSVELFDR 78 (85)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSSCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGGHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHH---HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcHHHHHHH
Confidence 346778888888888888888888887532223344 35666777778999999999999999999999999999999
Q ss_pred hCcccc
Q 027236 197 LGIEYD 202 (226)
Q Consensus 197 lGie~D 202 (226)
||++.+
T Consensus 79 ~g~~~~ 84 (85)
T 3viq_B 79 FGVNGS 84 (85)
T ss_dssp HTCCTT
T ss_pred hCCCCC
Confidence 999875
No 5
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=97.65 E-value=0.00015 Score=50.28 Aligned_cols=62 Identities=11% Similarity=0.295 Sum_probs=53.0
Q ss_pred chHHHHHHHHHHhcC-CCCcHHHHHHHHhcc--cccHHHHHHHHHHHHHcCCcceeecCc-eeEEE
Q 027236 6 DNTEAIVLNYVNEQN-RPLNSQNVADALQKY--NLKKAGIQKALDSLADNGKISFKEYGK-QKIYI 67 (226)
Q Consensus 6 ~ea~~~Il~y~~~~n-rPys~~di~~~l~~~--~v~K~~v~k~L~~Lv~~g~i~~K~~GK-~kiY~ 67 (226)
...+..||++|...+ +|+++.+|...+... +|++++|-..|+.|++.|+|..-..+. ...|-
T Consensus 16 t~~r~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv~~~~~~~~~~~y~ 81 (83)
T 2fu4_A 16 TLPRLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVTRHNFEGGKSVFE 81 (83)
T ss_dssp CHHHHHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEEEEECGGGCEEEE
T ss_pred CHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCeEEEeeCCCceEee
Confidence 567889999999887 899999999999653 799999999999999999999888744 44553
No 6
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=97.54 E-value=0.0016 Score=47.25 Aligned_cols=58 Identities=22% Similarity=0.306 Sum_probs=51.4
Q ss_pred chHHHHHHHHHHhcCCCCcHHHHHHHHhcccccHHHHHHHHHHHHHcCCcceeecCceeEEEe
Q 027236 6 DNTEAIVLNYVNEQNRPLNSQNVADALQKYNLKKAGIQKALDSLADNGKISFKEYGKQKIYIA 68 (226)
Q Consensus 6 ~ea~~~Il~y~~~~nrPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~K~~GK~kiY~~ 68 (226)
+..+-.|+.++ .+.|.++.+|...+ ++++++|...|..|.+.|+|.....|...+|..
T Consensus 20 ~~~r~~IL~~L--~~~~~~~~ela~~l---~is~~tv~~~l~~L~~~gli~~~~~gr~~~y~l 77 (114)
T 2oqg_A 20 DETRWEILTEL--GRADQSASSLATRL---PVSRQAIAKHLNALQACGLVESVKVGREIRYRA 77 (114)
T ss_dssp CHHHHHHHHHH--HHSCBCHHHHHHHS---SSCHHHHHHHHHHHHHTTSEEEEEETTEEEEEE
T ss_pred ChHHHHHHHHH--HcCCCCHHHHHHHH---CcCHHHHHHHHHHHHHCCCeeEEecCCEEEEEe
Confidence 45677899999 46789999998887 799999999999999999999988899888877
No 7
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=97.47 E-value=0.00042 Score=47.94 Aligned_cols=59 Identities=15% Similarity=0.253 Sum_probs=48.2
Q ss_pred HHHHHHHHHhcCCCCcHHHHHHHHhcccccHHHHHHHHHHHHHcCCccee--ecCceeEEEeecC
Q 027236 9 EAIVLNYVNEQNRPLNSQNVADALQKYNLKKAGIQKALDSLADNGKISFK--EYGKQKIYIARQD 71 (226)
Q Consensus 9 ~~~Il~y~~~~nrPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~K--~~GK~kiY~~~Q~ 71 (226)
+..|+.++.. +.|.+..+|.+.+ ||++++|.+.|+.|.+.|+|... ..|+..+|..+..
T Consensus 2 r~~Il~~L~~-~~~~s~~eLa~~l---gvs~~tv~r~L~~L~~~GlI~~~~~~~gr~~~y~l~~~ 62 (81)
T 2htj_A 2 KNEILEFLNR-HNGGKTAEIAEAL---AVTDYQARYYLLLLEKAGMVQRSPLRRGMATYWFLKGE 62 (81)
T ss_dssp HHHHHHHHHH-SCCCCHHHHHHHH---TSCHHHHHHHHHHHHHHTSEEEECCSSSSSCEEEESSC
T ss_pred HHHHHHHHHH-cCCCCHHHHHHHH---CcCHHHHHHHHHHHHHCCCEEEeccCCCCcEEEEEChh
Confidence 4679999975 4689999999988 89999999999999999999854 4466666666544
No 8
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=97.45 E-value=0.00078 Score=47.95 Aligned_cols=58 Identities=14% Similarity=0.292 Sum_probs=52.9
Q ss_pred chHHHHHHHHHHhcCCCCcHHHHHHHHhcccccHHHHHHHHHHHHHcCCcceeecCceeEEEe
Q 027236 6 DNTEAIVLNYVNEQNRPLNSQNVADALQKYNLKKAGIQKALDSLADNGKISFKEYGKQKIYIA 68 (226)
Q Consensus 6 ~ea~~~Il~y~~~~nrPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~K~~GK~kiY~~ 68 (226)
+..+-.|+.++.. .|.++.+|...+ |+++++|...|..|.+.|+|.....|+..+|..
T Consensus 22 ~~~r~~Il~~L~~--~~~~~~ela~~l---~is~~tvs~~L~~L~~~Glv~~~~~g~~~~y~l 79 (98)
T 3jth_A 22 NERRLQILCMLHN--QELSVGELCAKL---QLSQSALSQHLAWLRRDGLVTTRKEAQTVYYTL 79 (98)
T ss_dssp SHHHHHHHHHTTT--SCEEHHHHHHHH---TCCHHHHHHHHHHHHHTTSEEEECCTTCCEEEE
T ss_pred CHHHHHHHHHHhc--CCCCHHHHHHHH---CcCHHHHHHHHHHHHHCCCeEEEEeCCEEEEEE
Confidence 5667789999975 799999999988 799999999999999999999999999988887
No 9
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=97.38 E-value=0.00042 Score=52.53 Aligned_cols=62 Identities=16% Similarity=0.269 Sum_probs=53.4
Q ss_pred chHHHHHHHHHHhcCCCCcHHHHHHHHhcc--cccHHHHHHHHHHHHHcCCcceeecCce-eEEE
Q 027236 6 DNTEAIVLNYVNEQNRPLNSQNVADALQKY--NLKKAGIQKALDSLADNGKISFKEYGKQ-KIYI 67 (226)
Q Consensus 6 ~ea~~~Il~y~~~~nrPys~~di~~~l~~~--~v~K~~v~k~L~~Lv~~g~i~~K~~GK~-kiY~ 67 (226)
-..+..||++|..+++|+|+.+|...+... +|+.++|=..|+.|++.|+|..-.+|.. ..|-
T Consensus 10 T~qR~~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~~~~~~~~~~~y~ 74 (131)
T 2o03_A 10 TRQRAAISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLVDTLHTDTGESVYR 74 (131)
T ss_dssp HHHHHHHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSEEEEECTTSCEEEE
T ss_pred CHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCEEEEEeCCCceEEE
Confidence 356789999999999999999999999653 7999999999999999999999888644 4443
No 10
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=97.38 E-value=0.00016 Score=52.55 Aligned_cols=62 Identities=16% Similarity=0.245 Sum_probs=54.6
Q ss_pred chHHHHHHHHHHhcCCCCcHHHHHHHHhc-ccccHHHHHHHHHHHHHcCCcceeecCceeEEEe
Q 027236 6 DNTEAIVLNYVNEQNRPLNSQNVADALQK-YNLKKAGIQKALDSLADNGKISFKEYGKQKIYIA 68 (226)
Q Consensus 6 ~ea~~~Il~y~~~~nrPys~~di~~~l~~-~~v~K~~v~k~L~~Lv~~g~i~~K~~GK~kiY~~ 68 (226)
-..+-.||.++.+ +.|-++.+|.+.+.. .++++++|..+|+.|+++|+|.....|...+|++
T Consensus 34 T~~e~~VL~~L~~-~~~~t~~eL~~~l~~~~~~s~sTVt~~L~rLe~KGlV~R~~~gR~~~Y~p 96 (99)
T 2k4b_A 34 SNAELIVMRVIWS-LGEARVDEIYAQIPQELEWSLATVKTLLGRLVKKEMLSTEKEGRKFVYRP 96 (99)
T ss_dssp CCSCSHHHHHHHH-HSCEEHHHHHHTCCGGGCCCHHHHHHHHHHHHHTTSCEEEEETTEEEEEC
T ss_pred CHHHHHHHHHHHh-CCCCCHHHHHHHHhcccCCCHhhHHHHHHHHHHCCCEEEEeCCCEEEEEE
Confidence 3556789999997 669999999998864 2588999999999999999999999999999987
No 11
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=97.36 E-value=0.00066 Score=47.30 Aligned_cols=53 Identities=17% Similarity=0.248 Sum_probs=47.6
Q ss_pred hHHHHHHHHHHhcCCCCcHHHHHHHHhcccccHH-HHHHHHHHHHHcCCcceeecCce
Q 027236 7 NTEAIVLNYVNEQNRPLNSQNVADALQKYNLKKA-GIQKALDSLADNGKISFKEYGKQ 63 (226)
Q Consensus 7 ea~~~Il~y~~~~nrPys~~di~~~l~~~~v~K~-~v~k~L~~Lv~~g~i~~K~~GK~ 63 (226)
+-++.||.|++... |-++.+|.+.| ||+++ +|...|..|..+|+|.....|.-
T Consensus 11 ~~~~~IL~~Lk~~g-~~ta~eiA~~L---git~~~aVr~hL~~Le~eGlV~~~~~gRP 64 (79)
T 1xmk_A 11 EIKEKICDYLFNVS-DSSALNLAKNI---GLTKARDINAVLIDMERQGDVYRQGTTPP 64 (79)
T ss_dssp HHHHHHHHHHHHTC-CEEHHHHHHHH---CGGGHHHHHHHHHHHHHTTSEEEECSSSC
T ss_pred hHHHHHHHHHHHcC-CcCHHHHHHHc---CCCcHHHHHHHHHHHHHCCCEEecCCCCC
Confidence 56889999988654 99999999999 89999 99999999999999997777876
No 12
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=97.30 E-value=0.0025 Score=44.90 Aligned_cols=59 Identities=12% Similarity=0.224 Sum_probs=52.3
Q ss_pred chHHHHHHHHHHhcCCCCcHHHHHHHHhcccccHHHHHHHHHHHHHcCCcceeecCceeEEEe
Q 027236 6 DNTEAIVLNYVNEQNRPLNSQNVADALQKYNLKKAGIQKALDSLADNGKISFKEYGKQKIYIA 68 (226)
Q Consensus 6 ~ea~~~Il~y~~~~nrPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~K~~GK~kiY~~ 68 (226)
+..+-.|+.++. .+.|.+..+|...+ ++++++|...|..|.+.|+|.....|...+|..
T Consensus 23 ~~~~~~il~~l~-~~~~~s~~ela~~l---~is~~tvs~~l~~L~~~glv~~~~~~r~~~y~l 81 (99)
T 3cuo_A 23 HPKRLLILCMLS-GSPGTSAGELTRIT---GLSASATSQHLARMRDEGLIDSQRDAQRILYSI 81 (99)
T ss_dssp SHHHHHHHHHHT-TCCSEEHHHHHHHH---CCCHHHHHHHHHHHHHTTSEEEEECSSCEEEEE
T ss_pred ChHHHHHHHHHH-hCCCcCHHHHHHHH---CcCHHHHHHHHHHHHHCCCEEEEecCCEEEEEE
Confidence 456778998885 46699999999988 799999999999999999999999999888877
No 13
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=97.28 E-value=0.00073 Score=52.13 Aligned_cols=64 Identities=16% Similarity=0.244 Sum_probs=54.9
Q ss_pred chHHHHHHHHHHhcCCCCcHHHHHHHHhcc--cccHHHHHHHHHHHHHcCCcceeecCc-eeEEEee
Q 027236 6 DNTEAIVLNYVNEQNRPLNSQNVADALQKY--NLKKAGIQKALDSLADNGKISFKEYGK-QKIYIAR 69 (226)
Q Consensus 6 ~ea~~~Il~y~~~~nrPys~~di~~~l~~~--~v~K~~v~k~L~~Lv~~g~i~~K~~GK-~kiY~~~ 69 (226)
-..+..||++|..+.+|+|+.+|.+.+... +|+.++|=..|+.|++.|+|..-.+|. ...|-.+
T Consensus 21 T~qR~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~~~~~~~~Y~~~ 87 (145)
T 2fe3_A 21 TPQRHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLVKELTYGDASSRFDFV 87 (145)
T ss_dssp CHHHHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSEEEECCTTSCCEEEEC
T ss_pred CHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCEEEEeeCCCceEEECC
Confidence 467889999999999999999999999653 699999999999999999999888864 4556443
No 14
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=97.27 E-value=0.0007 Score=48.65 Aligned_cols=61 Identities=13% Similarity=0.235 Sum_probs=53.9
Q ss_pred cchHHHHHHHHHHhcCCCCcHHHHHHHHhcccccHHHHHHHHHHHHHcCCcceeecCceeEEEeec
Q 027236 5 SDNTEAIVLNYVNEQNRPLNSQNVADALQKYNLKKAGIQKALDSLADNGKISFKEYGKQKIYIARQ 70 (226)
Q Consensus 5 g~ea~~~Il~y~~~~nrPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~K~~GK~kiY~~~Q 70 (226)
++..+-.|+.++.. .|.++.+|...+ |+++++|...|..|.+.|+|.....|+..+|..+.
T Consensus 21 ~~~~r~~Il~~L~~--~~~~~~ela~~l---~is~~tvs~~L~~L~~~Glv~~~~~g~~~~y~l~~ 81 (102)
T 3pqk_A 21 SHPVRLMLVCTLVE--GEFSVGELEQQI---GIGQPTLSQQLGVLRESGIVETRRNIKQIFYRLTE 81 (102)
T ss_dssp CSHHHHHHHHHHHT--CCBCHHHHHHHH---TCCTTHHHHHHHHHHHTTSEEEECSSSCCEEEECS
T ss_pred CCHHHHHHHHHHHh--CCCCHHHHHHHH---CcCHHHHHHHHHHHHHCCCeEEEEeCCEEEEEECc
Confidence 36677889999963 789999999988 79999999999999999999999999988888844
No 15
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=97.26 E-value=0.0021 Score=47.52 Aligned_cols=59 Identities=20% Similarity=0.321 Sum_probs=53.5
Q ss_pred cchHHHHHHHHHHhcCCCCcHHHHHHHHhcccccHHHHHHHHHHHHHcCCcceeecCceeEEEe
Q 027236 5 SDNTEAIVLNYVNEQNRPLNSQNVADALQKYNLKKAGIQKALDSLADNGKISFKEYGKQKIYIA 68 (226)
Q Consensus 5 g~ea~~~Il~y~~~~nrPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~K~~GK~kiY~~ 68 (226)
++..+-.|+.++. +.|.++.+|...+ |+++++|...|..|.+.|+|.....|...+|..
T Consensus 16 ~~~~R~~Il~~L~--~~~~~~~eLa~~l---~is~~tvs~hL~~L~~~GlV~~~~~gr~~~y~l 74 (118)
T 3f6o_A 16 ADPTRRAVLGRLS--RGPATVSELAKPF---DMALPSFMKHIHFLEDSGWIRTHKQGRVRTCAI 74 (118)
T ss_dssp TSHHHHHHHHHHH--TCCEEHHHHHTTC---CSCHHHHHHHHHHHHHTTSEEEEEETTEEEEEE
T ss_pred CCHHHHHHHHHHH--hCCCCHHHHHHHh---CcCHHHHHHHHHHHHHCCCeEEEecCCEEEEEE
Confidence 3677889999998 5899999988877 899999999999999999999999999999988
No 16
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39
Probab=97.22 E-value=0.0074 Score=45.71 Aligned_cols=63 Identities=17% Similarity=0.241 Sum_probs=53.5
Q ss_pred chHHHHHHHHHHhcCCCCcHHHHHHHHhc-ccccHHHHHHHHHHHHHcCCcceeecCceeEEEe
Q 027236 6 DNTEAIVLNYVNEQNRPLNSQNVADALQK-YNLKKAGIQKALDSLADNGKISFKEYGKQKIYIA 68 (226)
Q Consensus 6 ~ea~~~Il~y~~~~nrPys~~di~~~l~~-~~v~K~~v~k~L~~Lv~~g~i~~K~~GK~kiY~~ 68 (226)
-..+-.||.++...+.|.++.+|...+.. .++++++|..+|+.|+++|+|.....|...+|++
T Consensus 8 t~~e~~vL~~L~~~~~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~kGlv~r~~~~r~~~~~~ 71 (138)
T 2g9w_A 8 GDLERAVMDHLWSRTEPQTVRQVHEALSARRDLAYTTVMAVLQRLAKKNLVLQIRDDRAHRYAP 71 (138)
T ss_dssp CHHHHHHHHHHHTCSSCEEHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTSEEEEC---CCEEEE
T ss_pred CHHHHHHHHHHHhcCCCCCHHHHHHHHhccCCCCHHHHHHHHHHHHHCCCEEEEecCCeEEEEe
Confidence 56788999999987789999999999953 2589999999999999999999999899888876
No 17
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=97.16 E-value=0.0014 Score=47.47 Aligned_cols=58 Identities=17% Similarity=0.282 Sum_probs=52.0
Q ss_pred chHHHHHHHHHHhcCCCCcHHHHHHHHhcccccHHHHHHHHHHHHHcCCcceeecCceeEEEe
Q 027236 6 DNTEAIVLNYVNEQNRPLNSQNVADALQKYNLKKAGIQKALDSLADNGKISFKEYGKQKIYIA 68 (226)
Q Consensus 6 ~ea~~~Il~y~~~~nrPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~K~~GK~kiY~~ 68 (226)
+..+-.|+.++. +.|.++.+|...+ |+++++|...|..|.+.|+|.....|+..+|..
T Consensus 25 ~~~r~~IL~~L~--~~~~~~~ela~~l---~is~stvs~~L~~L~~~Glv~~~~~gr~~~y~l 82 (106)
T 1r1u_A 25 DYNRIRIMELLS--VSEASVGHISHQL---NLSQSNVSHQLKLLKSVHLVKAKRQGQSMIYSL 82 (106)
T ss_dssp SHHHHHHHHHHH--HCCBCHHHHHHHH---TCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEE
T ss_pred CHHHHHHHHHHH--hCCCCHHHHHHHH---CcCHHHHHHHHHHHHHCCCeEEEEeCCEEEEEE
Confidence 566788999997 5789999999888 799999999999999999999999998877777
No 18
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=97.16 E-value=0.0039 Score=46.56 Aligned_cols=60 Identities=13% Similarity=0.266 Sum_probs=50.2
Q ss_pred chHHHHHHHHHHhcCCC-CcHHHHHHHHhcccccHHHHHHHHHHHHHcCCcceeec-----CceeEEEe
Q 027236 6 DNTEAIVLNYVNEQNRP-LNSQNVADALQKYNLKKAGIQKALDSLADNGKISFKEY-----GKQKIYIA 68 (226)
Q Consensus 6 ~ea~~~Il~y~~~~nrP-ys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~K~~-----GK~kiY~~ 68 (226)
...+..||.+|.....| .++.+|.+.+ ++++++|.+.|+.|++.|+|..... |...+|.+
T Consensus 25 t~~e~~il~~L~~~~~~~~t~~eLa~~l---~~s~sTV~r~L~~L~~~GlV~r~~~~~d~~~~~~~y~~ 90 (123)
T 3r0a_A 25 TKADLNVMKSFLNEPDRWIDTDALSKSL---KLDVSTVQRSVKKLHEKEILQRSQQNLDGGGYVYIYKI 90 (123)
T ss_dssp CHHHHHHHHHHHHSTTCCEEHHHHHHHH---TSCHHHHHHHHHHHHHTTSEEEEEEECTTSCEEEEEEE
T ss_pred CHHHHHHHHHHHHCCCCCcCHHHHHHHH---CcCHHHHHHHHHHHHHCCCEEeeCCccCCCcceEEEec
Confidence 45678899999999999 9999999988 7999999999999999999987642 33445555
No 19
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=97.16 E-value=0.0013 Score=51.06 Aligned_cols=63 Identities=16% Similarity=0.241 Sum_probs=53.8
Q ss_pred chHHHHHHHHHHhcCCCCcHHHHHHHHhcc--cccHHHHHHHHHHHHHcCCcceeecCc-eeEEEe
Q 027236 6 DNTEAIVLNYVNEQNRPLNSQNVADALQKY--NLKKAGIQKALDSLADNGKISFKEYGK-QKIYIA 68 (226)
Q Consensus 6 ~ea~~~Il~y~~~~nrPys~~di~~~l~~~--~v~K~~v~k~L~~Lv~~g~i~~K~~GK-~kiY~~ 68 (226)
-..+..||++|....+|+|+.+|.+.+... +|+.++|=..|+.|++.|+|..-.+|. ...|-.
T Consensus 26 T~qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~~~~~~~~Y~~ 91 (150)
T 2xig_A 26 SKQREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFISVLETSKSGRRYEI 91 (150)
T ss_dssp HHHHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSEEEEEETTTEEEEEE
T ss_pred CHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcEEEEEeCCCceEEEe
Confidence 456789999999999999999999999652 699999999999999999999888743 455644
No 20
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=97.13 E-value=0.0017 Score=45.39 Aligned_cols=59 Identities=22% Similarity=0.426 Sum_probs=48.0
Q ss_pred chHHHHHHHHHHhcC--CCCcHHHHHHHHhcccccHHHHHHHHHHHHHcCCcceeecCceeEEEe
Q 027236 6 DNTEAIVLNYVNEQN--RPLNSQNVADALQKYNLKKAGIQKALDSLADNGKISFKEYGKQKIYIA 68 (226)
Q Consensus 6 ~ea~~~Il~y~~~~n--rPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~K~~GK~kiY~~ 68 (226)
++....||++|.+.. .+.++.+|...| ||+++.|.+.|..|.++|+|..-- |+--.|++
T Consensus 9 ~~~~~~IL~~L~~~~pg~~~t~~eLA~~L---gvsr~tV~~~L~~Le~~G~I~~~g-~~~~~W~i 69 (81)
T 1qbj_A 9 QDQEQRILKFLEELGEGKATTAHDLSGKL---GTPKKEINRVLYSLAKKGKLQKEA-GTPPLWKI 69 (81)
T ss_dssp HHHHHHHHHHHHHHCTTCCBCHHHHHHHH---TCCHHHHHHHHHHHHHTTSEEEES-SSSCEEEE
T ss_pred hHHHHHHHHHHHHcCCCCCcCHHHHHHHH---CcCHHHHHHHHHHHHHCCCEEecC-CCCCeeEE
Confidence 567889999999654 489999999988 799999999999999999997653 44434444
No 21
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=97.11 E-value=0.0011 Score=50.87 Aligned_cols=64 Identities=20% Similarity=0.266 Sum_probs=54.3
Q ss_pred chHHHHHHHHHHhcCCCCcHHHHHHHHhcc--cccHHHHHHHHHHHHHcCCcceeecC-ceeEEEee
Q 027236 6 DNTEAIVLNYVNEQNRPLNSQNVADALQKY--NLKKAGIQKALDSLADNGKISFKEYG-KQKIYIAR 69 (226)
Q Consensus 6 ~ea~~~Il~y~~~~nrPys~~di~~~l~~~--~v~K~~v~k~L~~Lv~~g~i~~K~~G-K~kiY~~~ 69 (226)
-..+..||++|..+++|+|+.+|.+.|... +|+.++|=..|+.|++.|+|..-.+| ....|-..
T Consensus 13 T~qR~~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~~~~g~~~Y~~~ 79 (139)
T 3mwm_A 13 TRQRAAVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEVDVLRTAEGESVYRRC 79 (139)
T ss_dssp HHHHHHHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSSEEEECTTSCEEEECC
T ss_pred CHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCEEEEEcCCCceEEEEC
Confidence 356889999999999999999999999652 69999999999999999999988884 34566543
No 22
>1ucr_A Protein DSVD; dissimilatory sulfite reductase D, DNA binding motif, sulfate-reducing bacteria, winged-helix motif, unknown function; 1.20A {Desulfovibrio vulgaris} SCOP: a.4.5.45 PDB: 1wq2_A
Probab=97.10 E-value=0.0013 Score=45.26 Aligned_cols=61 Identities=15% Similarity=0.385 Sum_probs=54.9
Q ss_pred chHHHHHHHHHHhc---CCCCcHHHHHHHHhcccccHHHHHHHHHHHHHcCCcceeecCceeEEEe
Q 027236 6 DNTEAIVLNYVNEQ---NRPLNSQNVADALQKYNLKKAGIQKALDSLADNGKISFKEYGKQKIYIA 68 (226)
Q Consensus 6 ~ea~~~Il~y~~~~---nrPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~K~~GK~kiY~~ 68 (226)
+++.+.|++||... ...|=.+|+.+.++ +...-.|++++..||.+|.+..=-.|++..|-.
T Consensus 2 ee~K~~Ile~l~~k~~~KskfYf~D~~k~~P--~~k~r~vKK~~~~LV~Eg~leywSSGSTTmygl 65 (78)
T 1ucr_A 2 EEAKQKVVDFLNSKSGSKSKFYFNDFTDLFP--DMKQREVKKILTALVNDEVLEYWSSGSTTMYGL 65 (78)
T ss_dssp CHHHHHHHHHHSSHHHHSSCEEHHHHHHHCT--TSCHHHHHHHHHHHHHTTSEEEEEETTEEEEEE
T ss_pred hHHHHHHHHHHHhcccccccchHHHHHHHcc--ccCHHHHHHHHHHHHhcCceEEEecCCeEEEec
Confidence 57899999999985 44788999999887 578999999999999999999999999999976
No 23
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=97.08 E-value=0.0037 Score=45.52 Aligned_cols=58 Identities=14% Similarity=0.256 Sum_probs=51.7
Q ss_pred chHHHHHHHHHHhcCCCCcHHHHHHHHhcccccHHHHHHHHHHHHHcCCcceeecCceeEEEe
Q 027236 6 DNTEAIVLNYVNEQNRPLNSQNVADALQKYNLKKAGIQKALDSLADNGKISFKEYGKQKIYIA 68 (226)
Q Consensus 6 ~ea~~~Il~y~~~~nrPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~K~~GK~kiY~~ 68 (226)
+..+-.|+.++. +.|.++.+|...+ |+++++|...|..|.+.|+|.....|+..+|..
T Consensus 24 ~~~r~~IL~~L~--~~~~s~~eLa~~l---gis~stvs~~L~~L~~~GlV~~~~~gr~~~y~l 81 (108)
T 2kko_A 24 NGRRLQILDLLA--QGERAVEAIATAT---GMNLTTASANLQALKSGGLVEARREGTRQYYRI 81 (108)
T ss_dssp TSTTHHHHHHHT--TCCEEHHHHHHHH---TCCHHHHHHHHHHHHHHTSEEEEEETTEEEEEE
T ss_pred CHHHHHHHHHHH--cCCcCHHHHHHHH---CcCHHHHHHHHHHHHHCCCeEEEEeCCEEEEEE
Confidence 455678899886 4899999999988 799999999999999999999999999888877
No 24
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=97.07 E-value=0.036 Score=40.64 Aligned_cols=62 Identities=15% Similarity=0.185 Sum_probs=54.9
Q ss_pred chHHHHHHHHHHhcCCCCcHHHHHHHHhc-ccccHHHHHHHHHHHHHcCCcceeecCceeEEEe
Q 027236 6 DNTEAIVLNYVNEQNRPLNSQNVADALQK-YNLKKAGIQKALDSLADNGKISFKEYGKQKIYIA 68 (226)
Q Consensus 6 ~ea~~~Il~y~~~~nrPys~~di~~~l~~-~~v~K~~v~k~L~~Lv~~g~i~~K~~GK~kiY~~ 68 (226)
-.++-.|+.++.. +.|-+..+|.+.++. .++++++|..+|+.|+++|+|....-|...+|++
T Consensus 9 t~~q~~vL~~L~~-~~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~kGlv~R~~~~r~~~~~~ 71 (126)
T 1sd4_A 9 SMAEWDVMNIIWD-KKSVSANEIVVEIQKYKEVSDKTIRTLITRLYKKEIIKRYKSENIYFYSS 71 (126)
T ss_dssp CHHHHHHHHHHHH-SSSEEHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEE
T ss_pred CHHHHHHHHHHHh-cCCCCHHHHHHHHhhcCCCChhhHHHHHHHHHHCCceEEEeCCCeEEEEE
Confidence 5678899999998 569999999999964 3589999999999999999999998899888887
No 25
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=97.05 E-value=0.0011 Score=50.48 Aligned_cols=63 Identities=13% Similarity=0.279 Sum_probs=52.9
Q ss_pred chHHHHHHHHHHhcC-CCCcHHHHHHHHhcc--cccHHHHHHHHHHHHHcCCcceeecC-ceeEEEe
Q 027236 6 DNTEAIVLNYVNEQN-RPLNSQNVADALQKY--NLKKAGIQKALDSLADNGKISFKEYG-KQKIYIA 68 (226)
Q Consensus 6 ~ea~~~Il~y~~~~n-rPys~~di~~~l~~~--~v~K~~v~k~L~~Lv~~g~i~~K~~G-K~kiY~~ 68 (226)
-..+..||++|..+. +|+|+.+|.+.+... +|+.++|=..|+.|++.|+|..-.++ ....|-.
T Consensus 17 T~qR~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~~~~~~~~Y~~ 83 (136)
T 1mzb_A 17 TLPRVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLVVRHNFDGGHAVFEL 83 (136)
T ss_dssp CHHHHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEEEECSSSSSCEEEE
T ss_pred CHHHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcEEEEEeCCCceEEEe
Confidence 456889999999988 999999999999653 69999999999999999999988874 3455643
No 26
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=97.03 E-value=0.0011 Score=51.50 Aligned_cols=63 Identities=10% Similarity=0.269 Sum_probs=53.7
Q ss_pred chHHHHHHHHHHhcC-CCCcHHHHHHHHhcc--cccHHHHHHHHHHHHHcCCcceeecCc-eeEEEe
Q 027236 6 DNTEAIVLNYVNEQN-RPLNSQNVADALQKY--NLKKAGIQKALDSLADNGKISFKEYGK-QKIYIA 68 (226)
Q Consensus 6 ~ea~~~Il~y~~~~n-rPys~~di~~~l~~~--~v~K~~v~k~L~~Lv~~g~i~~K~~GK-~kiY~~ 68 (226)
-..+..||++|..+. +|+|+.+|.+.|... +|+.++|=..|+.|++.|+|..-.++. ...|-.
T Consensus 16 T~qR~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~~~~~~~~Y~~ 82 (150)
T 2w57_A 16 TLPRLKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIVTRHHFEGGKSVFEL 82 (150)
T ss_dssp CHHHHHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEEEEECGGGCEEEEE
T ss_pred CHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcEEEEEeCCCceEEEe
Confidence 456889999999888 999999999999653 699999999999999999999888843 455643
No 27
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=96.92 E-value=0.0038 Score=48.48 Aligned_cols=58 Identities=16% Similarity=0.297 Sum_probs=52.9
Q ss_pred chHHHHHHHHHHhcCCCCcHHHHHHHHhcccccHHHHHHHHHHHHHcCCcceeecCceeEEEe
Q 027236 6 DNTEAIVLNYVNEQNRPLNSQNVADALQKYNLKKAGIQKALDSLADNGKISFKEYGKQKIYIA 68 (226)
Q Consensus 6 ~ea~~~Il~y~~~~nrPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~K~~GK~kiY~~ 68 (226)
+..+-.||.+|. +.|.++.+|...+ ++++++|...|..|.+.|+|.....|...+|..
T Consensus 57 ~p~R~~IL~~L~--~~~~t~~eLa~~l---gls~stvs~hL~~L~~aGlV~~~~~Gr~~~y~l 114 (151)
T 3f6v_A 57 EPTRRRLVQLLT--SGEQTVNNLAAHF---PASRSAISQHLRVLTEAGLVTPRKDGRFRYYRL 114 (151)
T ss_dssp SHHHHHHHHHGG--GCCEEHHHHHTTS---SSCHHHHHHHHHHHHHTTSEEEEEETTEEEEEE
T ss_pred CHHHHHHHHHHH--hCCCCHHHHHHHH---CcCHHHHHHHHHHHHHCCCEEEEecCCEEEEEE
Confidence 566889999997 6899999998877 899999999999999999999999999988887
No 28
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=96.90 E-value=0.0022 Score=47.81 Aligned_cols=59 Identities=22% Similarity=0.361 Sum_probs=48.3
Q ss_pred chHHHHHHHHHHhcCCCCcHHHHHHHHhcccccHHHHHHHHHHHHHcCCcceeecCceeEEEe
Q 027236 6 DNTEAIVLNYVNEQNRPLNSQNVADALQKYNLKKAGIQKALDSLADNGKISFKEYGKQKIYIA 68 (226)
Q Consensus 6 ~ea~~~Il~y~~~~nrPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~K~~GK~kiY~~ 68 (226)
+..+-.|+.++.. +.|.++.+|...+ |+++++|...|..|.+.|+|.....|+..+|..
T Consensus 41 ~~~rl~IL~~L~~-~~~~s~~eLa~~l---~is~stvs~~L~~L~~~Glv~~~~~gr~~~y~l 99 (122)
T 1u2w_A 41 DENRAKITYALCQ-DEELCVCDIANIL---GVTIANASHHLRTLYKQGVVNFRKEGKLALYSL 99 (122)
T ss_dssp SHHHHHHHHHHHH-SSCEEHHHHHHHH---TCCHHHHHHHHHHHHHTTSEEEC----CCEEEE
T ss_pred CHHHHHHHHHHHH-CCCcCHHHHHHHH---CcCHHHHHHHHHHHHHCCCeEEEEECCEEEEEE
Confidence 4456678988874 6799999999988 799999999999999999999999999888887
No 29
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=96.90 E-value=0.002 Score=47.72 Aligned_cols=58 Identities=21% Similarity=0.237 Sum_probs=52.1
Q ss_pred chHHHHHHHHHHhcCCCCcHHHHHHHHhcccccHHHHHHHHHHHHHcCCcceeecCceeEEEe
Q 027236 6 DNTEAIVLNYVNEQNRPLNSQNVADALQKYNLKKAGIQKALDSLADNGKISFKEYGKQKIYIA 68 (226)
Q Consensus 6 ~ea~~~Il~y~~~~nrPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~K~~GK~kiY~~ 68 (226)
+..+-.||.++. +.|.++.+|...+ |+++++|...|..|.+.|+|.....|+..+|..
T Consensus 20 ~~~r~~IL~~L~--~~~~~~~eLa~~l---gis~stvs~~L~~L~~~GlV~~~~~gr~~~y~l 77 (118)
T 2jsc_A 20 DPTRCRILVALL--DGVCYPGQLAAHL---GLTRSNVSNHLSCLRGCGLVVATYEGRQVRYAL 77 (118)
T ss_dssp SHHHHHHHHHHH--TTCCSTTTHHHHH---SSCHHHHHHHHHHHTTTTSEEEEECSSSEEEEE
T ss_pred CHHHHHHHHHHH--cCCCCHHHHHHHH---CcCHHHHHHHHHHHHHCCceEEEEECCEEEEEE
Confidence 566788999987 4689999999888 799999999999999999999999999888887
No 30
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=96.87 E-value=0.0015 Score=51.47 Aligned_cols=64 Identities=13% Similarity=0.247 Sum_probs=51.3
Q ss_pred chHHHHHHHHHHhcCCCCcHHHHHHHHhcc----cccHHHHHHHHHHHHHcCCcceeecCce-eEEEee
Q 027236 6 DNTEAIVLNYVNEQNRPLNSQNVADALQKY----NLKKAGIQKALDSLADNGKISFKEYGKQ-KIYIAR 69 (226)
Q Consensus 6 ~ea~~~Il~y~~~~nrPys~~di~~~l~~~----~v~K~~v~k~L~~Lv~~g~i~~K~~GK~-kiY~~~ 69 (226)
-..+..||++|.++.+|+|+.+|.+.+... .|+.++|=.+|+.|++.|+|..=.+|.. ..|-.+
T Consensus 32 T~qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv~~i~~~~~~~~Y~~~ 100 (162)
T 4ets_A 32 TKQREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVTSISFGSAGKKYELA 100 (162)
T ss_dssp CHHHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSEEECC-----CCEEEC
T ss_pred CHHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCEEEEEeCCCceEEEeC
Confidence 346889999999999999999999988643 5999999999999999999998877654 346443
No 31
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=96.85 E-value=0.004 Score=42.92 Aligned_cols=58 Identities=22% Similarity=0.428 Sum_probs=47.3
Q ss_pred hHHHHHHHHHHhcC--CCCcHHHHHHHHhcccccHHHHHHHHHHHHHcCCcceeecCceeEEEe
Q 027236 7 NTEAIVLNYVNEQN--RPLNSQNVADALQKYNLKKAGIQKALDSLADNGKISFKEYGKQKIYIA 68 (226)
Q Consensus 7 ea~~~Il~y~~~~n--rPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~K~~GK~kiY~~ 68 (226)
+-+..||.+|.... .+.++.+|...| ||++++|.+.|..|..+|+|...- |+--.|++
T Consensus 14 ~~~~~IL~~L~~~~~~~~~t~~eLA~~L---gvs~~tV~~~L~~L~~~G~I~~~g-~~~~~W~i 73 (77)
T 1qgp_A 14 DQEQRILKFLEELGEGKATTAHDLSGKL---GTPKKEINRVLYSLAKKGKLQKEA-GTPPLWKI 73 (77)
T ss_dssp HHHHHHHHHHHHHCSSSCEEHHHHHHHH---CCCHHHHHHHHHHHHHHTSEEEEC-SSSCEEEE
T ss_pred HHHHHHHHHHHHcCCCCCcCHHHHHHHH---CcCHHHHHHHHHHHHHCCCEEecC-CCCCceEe
Confidence 44678999999776 489999999988 799999999999999999997764 44334444
No 32
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=96.79 E-value=0.003 Score=40.88 Aligned_cols=46 Identities=22% Similarity=0.411 Sum_probs=41.0
Q ss_pred HHHHHHHHHhcCCCCcHHHHHHHHhcccccHHHHHHHHHHHHHcCCcce
Q 027236 9 EAIVLNYVNEQNRPLNSQNVADALQKYNLKKAGIQKALDSLADNGKISF 57 (226)
Q Consensus 9 ~~~Il~y~~~~nrPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~ 57 (226)
+..||+|++.++-.+.+.++.+.+ ||.|..|-++|..|.++|+|.-
T Consensus 12 e~~lL~yIr~sGGildI~~~a~ky---gV~kdeV~~~LrrLe~KGLI~l 57 (59)
T 2xvc_A 12 ERELLDYIVNNGGFLDIEHFSKVY---GVEKQEVVKLLEALKNKGLIAV 57 (59)
T ss_dssp HHHHHHHHHHTTSEEEHHHHHHHH---CCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHcCCEEeHHHHHHHh---CCCHHHHHHHHHHHHHCCCeec
Confidence 678999999999999977776655 9999999999999999999964
No 33
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=96.79 E-value=0.0034 Score=43.41 Aligned_cols=52 Identities=23% Similarity=0.380 Sum_probs=46.3
Q ss_pred hHHHHHHHHHHhc-----CCCCcHHHHHHHHhcccccHHHHHHHHHHHHHcCCcceeecC
Q 027236 7 NTEAIVLNYVNEQ-----NRPLNSQNVADALQKYNLKKAGIQKALDSLADNGKISFKEYG 61 (226)
Q Consensus 7 ea~~~Il~y~~~~-----nrPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~K~~G 61 (226)
.....||+|+.+. +.|.|+.+|.+.+ ||+.++|.+-|..|.++|+|....-|
T Consensus 4 ~r~~~IL~~I~~~i~~~~g~~psv~EIa~~l---gvS~~TVrr~L~~Le~kG~I~R~~gg 60 (77)
T 2jt1_A 4 SIVTKIISIVQERQNMDDGAPVKTRDIADAA---GLSIYQVRLYLEQLHDVGVLEKVNAG 60 (77)
T ss_dssp THHHHHHHHHHHHHHHHTTSCEEHHHHHHHH---TCCHHHHHHHHHHHHHTTSEEEESCS
T ss_pred HHHHHHHHHHHHHHhhccCCCcCHHHHHHHH---CCCHHHHHHHHHHHHHCCcEEecCCC
Confidence 4567899999998 7899999999999 79999999999999999999877544
No 34
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=96.75 E-value=0.011 Score=43.28 Aligned_cols=62 Identities=19% Similarity=0.213 Sum_probs=53.9
Q ss_pred chHHHHHHHHHHhcCCCCcHHHHHHHHhc-ccccHHHHHHHHHHHHHcCCcceeecCceeEEEe
Q 027236 6 DNTEAIVLNYVNEQNRPLNSQNVADALQK-YNLKKAGIQKALDSLADNGKISFKEYGKQKIYIA 68 (226)
Q Consensus 6 ~ea~~~Il~y~~~~nrPys~~di~~~l~~-~~v~K~~v~k~L~~Lv~~g~i~~K~~GK~kiY~~ 68 (226)
...+-.||.++.. +.|.+..+|...+.. .++++++|..+|+.|++.|+|.....|...+|++
T Consensus 9 t~~~~~vL~~l~~-~~~~t~~ela~~l~~~~~~s~~tv~~~l~~L~~~Glv~r~~~~rr~~~~~ 71 (123)
T 1okr_A 9 SSAEWEVMNIIWM-KKYASANNIIEEIQMQKDWSPKTIRTLITRLYKKGFIDRKKDNKIFQYYS 71 (123)
T ss_dssp CHHHHHHHHHHHH-HSSEEHHHHHHHHHHHCCCCHHHHHHHHHHHHHHTSEEEEEETTEEEEEE
T ss_pred CHHHHHHHHHHHh-CCCcCHHHHHHHHhccCCCcHhhHHHHHHHHHHCCCeEEEecCCeEEEEE
Confidence 4567789999987 789999999998853 2489999999999999999999887799888887
No 35
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=96.74 E-value=0.0048 Score=43.73 Aligned_cols=56 Identities=13% Similarity=0.186 Sum_probs=47.3
Q ss_pred chHHHHHHHHHHhcCCCCcHHHHHHHHhcccccHHHHHHHHHHHHHcCCcceeecCceeEEEeecC
Q 027236 6 DNTEAIVLNYVNEQNRPLNSQNVADALQKYNLKKAGIQKALDSLADNGKISFKEYGKQKIYIARQD 71 (226)
Q Consensus 6 ~ea~~~Il~y~~~~nrPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~K~~GK~kiY~~~Q~ 71 (226)
+..+..|+.++ +.|.++.+|...+ ++++++|.+.|+.|.+.|+|.... | .|..+..
T Consensus 30 ~~~r~~Il~~L---~~~~~~~eLa~~l---~is~~tv~~~L~~L~~~Glv~~~~-g---~y~l~~~ 85 (96)
T 1y0u_A 30 NPVRRKILRML---DKGRSEEEIMQTL---SLSKKQLDYHLKVLEAGFCIERVG-E---RWVVTDA 85 (96)
T ss_dssp CHHHHHHHHHH---HTTCCHHHHHHHH---TCCHHHHHHHHHHHHHTTSEEEET-T---EEEECTT
T ss_pred CHHHHHHHHHH---cCCCCHHHHHHHH---CcCHHHHHHHHHHHHHCCCEEEEC-C---EEEECCC
Confidence 45567899999 5789999999888 799999999999999999999877 7 6666443
No 36
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=96.71 E-value=0.0023 Score=44.87 Aligned_cols=57 Identities=12% Similarity=0.188 Sum_probs=48.5
Q ss_pred hHHHHHHHHHHhcCCCCcHHHHHHHHhcccccHHHHHHHHHHHHHcCCcceeecCceeEEEe
Q 027236 7 NTEAIVLNYVNEQNRPLNSQNVADALQKYNLKKAGIQKALDSLADNGKISFKEYGKQKIYIA 68 (226)
Q Consensus 7 ea~~~Il~y~~~~nrPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~K~~GK~kiY~~ 68 (226)
.-...||.||.. +- .++.+|...| ||++++|...|..|..+|.|....-..-++|+.
T Consensus 17 ~~~~~IL~lL~~-~g-~sa~eLAk~L---giSk~aVr~~L~~Le~eG~I~~~~~~PP~W~~~ 73 (82)
T 1oyi_A 17 EIVCEAIKTIGI-EG-ATAAQLTRQL---NMEKREVNKALYDLQRSAMVYSSDDIPPRWFMT 73 (82)
T ss_dssp HHHHHHHHHHSS-ST-EEHHHHHHHS---SSCHHHHHHHHHHHHHHTSSEECSSSSCEEESC
T ss_pred HHHHHHHHHHHH-cC-CCHHHHHHHH---CcCHHHHHHHHHHHHHCCCEEeCCCCCCcceec
Confidence 556789999994 33 9999998888 899999999999999999999876666677766
No 37
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=96.71 E-value=0.004 Score=47.97 Aligned_cols=62 Identities=16% Similarity=0.299 Sum_probs=52.6
Q ss_pred chHHHHHHHHHHhcCCCCcHHHHHHHHhcc--cccHHHHHHHHHHHHHcCCcceeecCce-eEEEe
Q 027236 6 DNTEAIVLNYVNEQNRPLNSQNVADALQKY--NLKKAGIQKALDSLADNGKISFKEYGKQ-KIYIA 68 (226)
Q Consensus 6 ~ea~~~Il~y~~~~nrPys~~di~~~l~~~--~v~K~~v~k~L~~Lv~~g~i~~K~~GK~-kiY~~ 68 (226)
-..+..||++|.... |.|+.+|.+.+... .|+.++|=.+|+.|++.|+|..=.+|.. ..|-.
T Consensus 18 T~qR~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~~i~~~~~~~~Y~~ 82 (145)
T 3eyy_A 18 TPQRQLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGLVSHAHLGHGAPTYHL 82 (145)
T ss_dssp CHHHHHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSEEEEECGGGCEEEEE
T ss_pred CHHHHHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcEEEEEeCCCceEEEe
Confidence 457889999999988 99999999999763 6999999999999999999998877544 45543
No 38
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=96.68 E-value=0.0064 Score=45.34 Aligned_cols=58 Identities=19% Similarity=0.353 Sum_probs=51.1
Q ss_pred chHHHHHHHHHHhcCCCCcHHHHHHHHhcccccHHHHHHHHHHHHHcCCcceeecCceeEEEe
Q 027236 6 DNTEAIVLNYVNEQNRPLNSQNVADALQKYNLKKAGIQKALDSLADNGKISFKEYGKQKIYIA 68 (226)
Q Consensus 6 ~ea~~~Il~y~~~~nrPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~K~~GK~kiY~~ 68 (226)
+..+-.||.++. +.|.++.+|...+ |+++++|...|..|.+.|+|.....|+..+|..
T Consensus 45 ~~~rl~IL~~L~--~~~~s~~ela~~l---gis~stvs~~L~~Le~~Glv~~~~~gr~~~y~l 102 (122)
T 1r1t_A 45 DPNRLRLLSLLA--RSELCVGDLAQAI---GVSESAVSHQLRSLRNLRLVSYRKQGRHVYYQL 102 (122)
T ss_dssp CHHHHHHHHHHT--TCCBCHHHHHHHH---TCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEE
T ss_pred CHHHHHHHHHHH--cCCCCHHHHHHHH---CcCHHHHHHHHHHHHHCCCeEEEEeCCEEEEEE
Confidence 445667888886 3799999999988 799999999999999999999999999888877
No 39
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=96.68 E-value=0.024 Score=39.66 Aligned_cols=59 Identities=10% Similarity=0.167 Sum_probs=49.3
Q ss_pred chHHHHHHHHHHhcCCCCcHHHHHHHHhcccccHHHHHHHHHHHHHcCCcceee---cCceeEEEe
Q 027236 6 DNTEAIVLNYVNEQNRPLNSQNVADALQKYNLKKAGIQKALDSLADNGKISFKE---YGKQKIYIA 68 (226)
Q Consensus 6 ~ea~~~Il~y~~~~nrPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~K~---~GK~kiY~~ 68 (226)
+..+-.||.++.. +.|.+..+|...+ ++++++|...|+.|.+.|+|.... -|...+|..
T Consensus 15 ~~~~~~iL~~L~~-~~~~~~~ela~~l---~is~~tvs~~l~~L~~~gli~~~~~~~~~r~~~~~l 76 (100)
T 1ub9_A 15 NPVRLGIMIFLLP-RRKAPFSQIQKVL---DLTPGNLDSHIRVLERNGLVKTYKVIADRPRTVVEI 76 (100)
T ss_dssp SHHHHHHHHHHHH-HSEEEHHHHHHHT---TCCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEE
T ss_pred ChHHHHHHHHHHh-cCCcCHHHHHHHH---CcCHHHHHHHHHHHHHCCCEEEEecCCCcceEEEEE
Confidence 4556778998875 4589999998888 799999999999999999999766 677677766
No 40
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=96.61 E-value=0.016 Score=40.92 Aligned_cols=58 Identities=16% Similarity=0.179 Sum_probs=46.9
Q ss_pred chHHHHHHHHHHhcCCCCcHHHHHHHHhcccccHHHHHHHHHHHHHcCCcceeec-CceeEEE
Q 027236 6 DNTEAIVLNYVNEQNRPLNSQNVADALQKYNLKKAGIQKALDSLADNGKISFKEY-GKQKIYI 67 (226)
Q Consensus 6 ~ea~~~Il~y~~~~nrPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~K~~-GK~kiY~ 67 (226)
...+-.|+.++.. +.|.+..+|...+ ++++++|...|+.|++.|+|..... ++-..|+
T Consensus 19 ~~~~~~il~~l~~-~~~~s~~ela~~l---~is~~tv~~~l~~L~~~glv~~~~~~~~r~~~~ 77 (109)
T 1sfx_A 19 KPSDVRIYSLLLE-RGGMRVSEIAREL---DLSARFVRDRLKVLLKRGFVRREIVEKGWVGYI 77 (109)
T ss_dssp CHHHHHHHHHHHH-HCCBCHHHHHHHH---TCCHHHHHHHHHHHHHTTSEEEEEEESSSEEEE
T ss_pred CHHHHHHHHHHHH-cCCCCHHHHHHHH---CCCHHHHHHHHHHHHHCCCEEEEeecCCceEEE
Confidence 4567789999975 5689999999988 7999999999999999999988654 3333333
No 41
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=96.55 E-value=0.018 Score=40.70 Aligned_cols=51 Identities=25% Similarity=0.420 Sum_probs=43.2
Q ss_pred hHHHHHHHHHHhcCCCCcHHHHHHHHhcccccHHHHHHHHHHHHHcCCcceeec
Q 027236 7 NTEAIVLNYVNEQNRPLNSQNVADALQKYNLKKAGIQKALDSLADNGKISFKEY 60 (226)
Q Consensus 7 ea~~~Il~y~~~~nrPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~K~~ 60 (226)
..+-.|+.++...+.|.+..+|...+ |+++++|...|+.|.+.|+|.....
T Consensus 21 ~~~~~~l~~l~~~~~~~t~~ela~~l---~is~~tv~~~l~~L~~~g~v~~~~~ 71 (109)
T 2d1h_A 21 DTDVAVLLKMVEIEKPITSEELADIF---KLSKTTVENSLKKLIELGLVVRTKT 71 (109)
T ss_dssp HHHHHHHHHHHHHCSCEEHHHHHHHH---TCCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHH---CcCHHHHHHHHHHHHHCCCeEeecc
Confidence 34456666777668899999999988 8999999999999999999988755
No 42
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=96.55 E-value=0.15 Score=37.79 Aligned_cols=112 Identities=15% Similarity=0.150 Sum_probs=69.9
Q ss_pred hHHHHHHHHHHhcCCCCcHHHHHHHHhcccccHHHHHHHHHHHHHcCCcceeecC--ceeEEEeecCCCCCCCHHHHHHH
Q 027236 7 NTEAIVLNYVNEQNRPLNSQNVADALQKYNLKKAGIQKALDSLADNGKISFKEYG--KQKIYIARQDQFDIPNSEELNQM 84 (226)
Q Consensus 7 ea~~~Il~y~~~~nrPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~K~~G--K~kiY~~~Q~~~~~~~~ee~~~l 84 (226)
..+-.||.++... .|.+..+|...+ ++++++|..+|+.|++.|+|....-+ +-.+|+. +. +.-...+
T Consensus 29 ~~~~~iL~~l~~~-~~~t~~~la~~l---~~s~~~vs~~l~~Le~~gli~r~~~~~d~R~~~~~----lT---~~G~~~~ 97 (144)
T 1lj9_A 29 RGQYLYLVRVCEN-PGIIQEKIAELI---KVDRTTAARAIKRLEEQGFIYRQEDASNKKIKRIY----AT---EKGKNVY 97 (144)
T ss_dssp TTHHHHHHHHHHS-TTEEHHHHHHHH---TCCHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEE----EC---HHHHHHH
T ss_pred HHHHHHHHHHHHC-cCcCHHHHHHHH---CCCHhHHHHHHHHHHHCCCEEeecCCCCCceeeeE----EC---hhHHHHH
Confidence 4456788888764 589999999988 79999999999999999999987643 2233333 22 2222111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 027236 85 KEENAKLQEQLEEQRKAISKLEGEIRTLQSNLTLEQIREKEAQLVKEVKEMENKLAKLR 143 (226)
Q Consensus 85 ~~~i~~l~~~l~~l~~~~k~l~~el~~l~~~~t~~el~~~i~~L~~e~~~l~~kL~~l~ 143 (226)
..+.. ....-...+....+.+++..-..-|..=...++..++.++
T Consensus 98 -~~~~~-------------~~~~~~~~~~~~l~~~e~~~l~~~l~~l~~~l~~~~~~~k 142 (144)
T 1lj9_A 98 -PIIVR-------------ENQHSNQVALQGLSEVEISQLADYLVRMRKNVSEDWEFVK 142 (144)
T ss_dssp -HHHHH-------------HHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHH-------------HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhHHHHHHhcc
Confidence 11111 1111233445567777776666666665555665555544
No 43
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=96.49 E-value=0.16 Score=37.59 Aligned_cols=59 Identities=19% Similarity=0.336 Sum_probs=47.3
Q ss_pred hHHHHHHHHHHhcCCCCcHHHHHHHHhcccccHHHHHHHHHHHHHcCCcceee-cC-ceeEEEe
Q 027236 7 NTEAIVLNYVNEQNRPLNSQNVADALQKYNLKKAGIQKALDSLADNGKISFKE-YG-KQKIYIA 68 (226)
Q Consensus 7 ea~~~Il~y~~~~nrPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~K~-~G-K~kiY~~ 68 (226)
.....|+.++.-.+.|.++.+|.+.+ ++++++|...|+.|++.|+|.... -| +-.+|..
T Consensus 26 ~~~~~il~~L~~~~~~~t~~ela~~l---~~~~stvs~~l~~L~~~G~v~r~~~~~d~r~~~~~ 86 (152)
T 1ku9_A 26 KSVGAVYAILYLSDKPLTISDIMEEL---KISKGNVSMSLKKLEELGFVRKVWIKGERKNYYEA 86 (152)
T ss_dssp HHHHHHHHHHHHCSSCEEHHHHHHHH---TCCHHHHHHHHHHHHHTTSEEEECCTTCSSCEEEE
T ss_pred hhHHHHHHHHHHcCCCCCHHHHHHHH---CcCHHHHHHHHHHHHHCCCEEEEecCCCceEEEee
Confidence 45667888886567899999999988 799999999999999999998764 23 3445554
No 44
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=96.44 E-value=0.016 Score=48.18 Aligned_cols=60 Identities=10% Similarity=0.145 Sum_probs=49.4
Q ss_pred chHHHHHHHHHHhcCCCCcHHHHHHHHhcccccHHHHHHHHHHHHHcCCcce-eecCc-----eeEEEeec
Q 027236 6 DNTEAIVLNYVNEQNRPLNSQNVADALQKYNLKKAGIQKALDSLADNGKISF-KEYGK-----QKIYIARQ 70 (226)
Q Consensus 6 ~ea~~~Il~y~~~~nrPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~-K~~GK-----~kiY~~~Q 70 (226)
+..+-.|+.++.. .|.++.+|...+ |++.++|...|..|.+.|+|.. ...|. ..+|..+.
T Consensus 11 ~~~R~~IL~~L~~--g~~s~~ELa~~l---glS~stVs~hL~~Le~aGLV~~~~~~gr~~GRp~~~Y~Lt~ 76 (232)
T 2qlz_A 11 NKVRRDLLSHLTC--MECYFSLLSSKV---SVSSTAVAKHLKIMEREGVLQSYEKEERFIGPTKKYYKISI 76 (232)
T ss_dssp SHHHHHHHHHHTT--TTTCSSSSCTTC---CCCHHHHHHHHHHHHHTTSEEEEEECC-----CEEEEEECC
T ss_pred CHHHHHHHHHHHh--CCCCHHHHHHHH---CcCHHHHHHHHHHHHHCCCEEEeeecCCCCCCccEEEEEcc
Confidence 5667889999973 799988877665 8999999999999999999999 67787 78887543
No 45
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=96.43 E-value=0.022 Score=44.19 Aligned_cols=52 Identities=21% Similarity=0.354 Sum_probs=44.9
Q ss_pred chHHHHHHHHHHhcCCCCcHHHHHHHHhcccccHHHHHHHHHHHHHcCCcceeec
Q 027236 6 DNTEAIVLNYVNEQNRPLNSQNVADALQKYNLKKAGIQKALDSLADNGKISFKEY 60 (226)
Q Consensus 6 ~ea~~~Il~y~~~~nrPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~K~~ 60 (226)
...+-.||.++...+.|-+..+|...+ ++++++|..+|+.|++.|+|....-
T Consensus 52 t~~q~~vL~~L~~~~~~~t~~eLa~~l---~i~~~tvs~~l~~Le~~GlV~r~~~ 103 (166)
T 3deu_A 52 TQTHWVTLHNIHQLPPDQSQIQLAKAI---GIEQPSLVRTLDQLEDKGLISRQTC 103 (166)
T ss_dssp CHHHHHHHHHHHHSCSSEEHHHHHHHH---TSCHHHHHHHHHHHHHTTSEEEC--
T ss_pred CHHHHHHHHHHHHcCCCCCHHHHHHHH---CCCHhhHHHHHHHHHHCCCEEeeCC
Confidence 345678999999888899999999988 7999999999999999999987753
No 46
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}
Probab=96.40 E-value=0.016 Score=41.37 Aligned_cols=58 Identities=14% Similarity=0.240 Sum_probs=50.3
Q ss_pred chHHHHHHHHHHhcCCCCcHHHHHHHHhcccccHHHHHHHHHHHHHcCCcceeecCceeEEEe
Q 027236 6 DNTEAIVLNYVNEQNRPLNSQNVADALQKYNLKKAGIQKALDSLADNGKISFKEYGKQKIYIA 68 (226)
Q Consensus 6 ~ea~~~Il~y~~~~nrPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~K~~GK~kiY~~ 68 (226)
+..+-.|+.++.. +.|.++.+|...+ |+++++|...|..|.+. +|....-|+..+|..
T Consensus 26 ~~~Rl~IL~~l~~-~~~~~~~ela~~l---~is~stvs~hL~~L~~~-lv~~~~~gr~~~y~l 83 (99)
T 2zkz_A 26 HPMRLKIVNELYK-HKALNVTQIIQIL---KLPQSTVSQHLCKMRGK-VLKRNRQGLEIYYSI 83 (99)
T ss_dssp SHHHHHHHHHHHH-HSCEEHHHHHHHH---TCCHHHHHHHHHHHBTT-TBEEEEETTEEEEEC
T ss_pred CHHHHHHHHHHHH-CCCcCHHHHHHHH---CcCHHHHHHHHHHHHHH-hhhheEeCcEEEEEE
Confidence 5667788876664 4789999999988 89999999999999999 999999999887777
No 47
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=96.38 E-value=0.012 Score=42.53 Aligned_cols=70 Identities=19% Similarity=0.293 Sum_probs=57.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cc--C------------CH---HHHHHHHHHHHHHHHHHHH
Q 027236 77 NSEELNQMKEENAKLQEQLEEQRKAISKLEGEIRTLQ--SN--L------------TL---EQIREKEAQLVKEVKEMEN 137 (226)
Q Consensus 77 ~~ee~~~l~~~i~~l~~~l~~l~~~~k~l~~el~~l~--~~--~------------t~---~el~~~i~~L~~e~~~l~~ 137 (226)
|.+++..+..+|++|+.+...|..++..|+.+|.... +. | .+ .+....+..|+.++..|+.
T Consensus 10 ~~e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~~l~Gd~~~~~TKVlH~~~NPa~~a~~~~~~~~e~Lq~E~erLr~ 89 (100)
T 1go4_E 10 SREEADTLRLKVEELEGERSRLEEEKRMLEAQLERRALQGDYDQSRTKVLHMSLNPTSVARQRLREDHSQLQAECERLRG 89 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSCCCTTTEEEEEESSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccCeeeeecCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6889999999999999999999999999999998832 21 2 22 4667889999999999999
Q ss_pred HHHHhhCCC
Q 027236 138 KLAKLRGGV 146 (226)
Q Consensus 138 kL~~l~~~~ 146 (226)
++..+..|.
T Consensus 90 ~v~~lEeg~ 98 (100)
T 1go4_E 90 LLRAMERGG 98 (100)
T ss_dssp HHTTCC---
T ss_pred HHHHHhccC
Confidence 998887754
No 48
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=96.37 E-value=0.044 Score=38.58 Aligned_cols=62 Identities=19% Similarity=0.245 Sum_probs=48.5
Q ss_pred chHHHHHHHHHHhcCCCCcHHHHHHHHhc-ccccHHHHHHHHHHHHHcCCcceeecCceeEEEe
Q 027236 6 DNTEAIVLNYVNEQNRPLNSQNVADALQK-YNLKKAGIQKALDSLADNGKISFKEYGKQKIYIA 68 (226)
Q Consensus 6 ~ea~~~Il~y~~~~nrPys~~di~~~l~~-~~v~K~~v~k~L~~Lv~~g~i~~K~~GK~kiY~~ 68 (226)
...+-.||.++.. +.|.+..+|...+.. .++++++|...|+.|++.|+|....-+....|..
T Consensus 7 t~~q~~iL~~l~~-~~~~~~~el~~~la~~l~is~~tvs~~l~~Le~~gli~r~~~~r~~~~~L 69 (99)
T 1tbx_A 7 FYPEAIVLAYLYD-NEGIATYDLYKKVNAEFPMSTATFYDAKKFLIQEGFVKERQERGEKRLYL 69 (99)
T ss_dssp BCHHHHHHHHHTT-CTTCBHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEE
T ss_pred CHHHHHHHHHHHH-cCCcCHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCEEEEecCCceEEEE
Confidence 3456788888875 678999999433322 3899999999999999999999887776665555
No 49
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=96.30 E-value=0.21 Score=36.94 Aligned_cols=49 Identities=16% Similarity=0.232 Sum_probs=43.2
Q ss_pred hHHHHHHHHHHhcCCCCcHHHHHHHHhcccccHHHHHHHHHHHHHcCCcceeec
Q 027236 7 NTEAIVLNYVNEQNRPLNSQNVADALQKYNLKKAGIQKALDSLADNGKISFKEY 60 (226)
Q Consensus 7 ea~~~Il~y~~~~nrPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~K~~ 60 (226)
..+-.||.++. +.|.+..+|...+ ++++++|..+|+.|++.|+|....-
T Consensus 37 ~~~~~iL~~l~--~~~~~~~ela~~l---~~s~~tvs~~l~~Le~~glv~r~~~ 85 (146)
T 2gxg_A 37 YLDFLVLRATS--DGPKTMAYLANRY---FVTQSAITASVDKLEEMGLVVRVRD 85 (146)
T ss_dssp HHHHHHHHHHT--TSCBCHHHHHHHT---TCCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred HHHHHHHHHHh--cCCcCHHHHHHHh---CCCchhHHHHHHHHHHCCCEEeecC
Confidence 45667888888 8899999998887 7999999999999999999998765
No 50
>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64
Probab=96.26 E-value=0.042 Score=44.65 Aligned_cols=60 Identities=18% Similarity=0.329 Sum_probs=50.6
Q ss_pred chHHHHHHHHHHhcCCCCcHHHHHHHHhcccccHHHHHHHHHHHHHcCCcceeec-----CceeEEEeec
Q 027236 6 DNTEAIVLNYVNEQNRPLNSQNVADALQKYNLKKAGIQKALDSLADNGKISFKEY-----GKQKIYIARQ 70 (226)
Q Consensus 6 ~ea~~~Il~y~~~~nrPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~K~~-----GK~kiY~~~Q 70 (226)
+..+-.||.++. +.|.++.+|...+ +++.++|...|..|.+.|+|..... |..++|....
T Consensus 14 ~~~rl~IL~~L~--~~~~s~~eLa~~l---~is~stvs~hLk~Le~~GLV~~~~~~~~~g~~~~~Y~Lt~ 78 (202)
T 2p4w_A 14 NETRRRILFLLT--KRPYFVSELSREL---GVGQKAVLEHLRILEEAGLIESRVEKIPRGRPRKYYMIKK 78 (202)
T ss_dssp SHHHHHHHHHHH--HSCEEHHHHHHHH---TCCHHHHHHHHHHHHHTTSEEEEECCBTTBCCCEEEEECT
T ss_pred CHHHHHHHHHHH--hCCCCHHHHHHHH---CcCHHHHHHHHHHHHHCCceEEEeeccCCCCceEEEEECh
Confidence 456778999995 5799999999988 7999999999999999999999877 6666666543
No 51
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=96.26 E-value=0.0097 Score=43.07 Aligned_cols=60 Identities=22% Similarity=0.381 Sum_probs=47.1
Q ss_pred chHHHHHHHHHHhcCCCCcHHHHHHHHhcccccHHHHHHHHHHHHHcCCccee----ec-CceeEEEe
Q 027236 6 DNTEAIVLNYVNEQNRPLNSQNVADALQKYNLKKAGIQKALDSLADNGKISFK----EY-GKQKIYIA 68 (226)
Q Consensus 6 ~ea~~~Il~y~~~~nrPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~K----~~-GK~kiY~~ 68 (226)
++..-.|+..+.....|.+..+|...+ ||++++|.++|..|.+.|+|... .. |...+||.
T Consensus 17 ~~~~l~Il~~l~~~g~~~s~~eLa~~l---gvs~~tV~~~L~~L~~~GlV~~~~~~~~~~g~~v~~~~ 81 (110)
T 1q1h_A 17 GDDVIDVLRILLDKGTEMTDEEIANQL---NIKVNDVRKKLNLLEEQGFVSYRKTRDKDSGWFIYYWK 81 (110)
T ss_dssp CSTTHHHHHHHHHHCSCBCHHHHHHTT---TSCHHHHHHHHHHHHHHTSCEEEEEC---CCCCEEEEE
T ss_pred ChHHHHHHHHHHHcCCCCCHHHHHHHH---CcCHHHHHHHHHHHHHCCCEEEEecccCCCceEEEEee
Confidence 345667888888778778998888877 89999999999999999999887 44 44444455
No 52
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=96.25 E-value=0.073 Score=40.02 Aligned_cols=47 Identities=15% Similarity=0.312 Sum_probs=41.1
Q ss_pred hHHHHHHHHHHhcCCCCcHHHHHHHHhcccccHHHHHHHHHHHHHcCCccee
Q 027236 7 NTEAIVLNYVNEQNRPLNSQNVADALQKYNLKKAGIQKALDSLADNGKISFK 58 (226)
Q Consensus 7 ea~~~Il~y~~~~nrPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~K 58 (226)
..+-.||.++ .+.|.+..+|...+ ++++++|..+|+.|++.|+|...
T Consensus 38 ~~q~~iL~~l--~~~~~t~~eLa~~l---~~~~~~vs~~l~~Le~~Glv~r~ 84 (151)
T 3kp7_A 38 AEQSHVLNML--SIEALTVGQITEKQ---GVNKAAVSRRVKKLLNAELVKLE 84 (151)
T ss_dssp HHHHHHHHHH--HHSCBCHHHHHHHH---CSCSSHHHHHHHHHHHTTSEEC-
T ss_pred HHHHHHHHHH--HcCCcCHHHHHHHH---CCCHHHHHHHHHHHHHCCCEEee
Confidence 3456788888 78899999999988 79999999999999999999973
No 53
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=96.21 E-value=0.063 Score=41.00 Aligned_cols=52 Identities=19% Similarity=0.318 Sum_probs=45.1
Q ss_pred hHHHHHHHHHHhcCCCCcHHHHHHHHhcccccHHHHHHHHHHHHHcCCcceeecC
Q 027236 7 NTEAIVLNYVNEQNRPLNSQNVADALQKYNLKKAGIQKALDSLADNGKISFKEYG 61 (226)
Q Consensus 7 ea~~~Il~y~~~~nrPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~K~~G 61 (226)
..+-.||.++...+.+-+..+|...+ +|++++|..+++.|+..|+|....-.
T Consensus 31 ~~q~~vL~~L~~~~~~~~~~eLa~~l---~~~~~tvs~~v~~Le~~GlV~R~~~~ 82 (151)
T 4aik_A 31 QTHWVTLYNINRLPPEQSQIQLAKAI---GIEQPSLVRTLDQLEEKGLITRHTSA 82 (151)
T ss_dssp HHHHHHHHHHHHSCTTSCHHHHHHHH---TSCHHHHHHHHHHHHHTTSEEEEECS
T ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHH---CcCHHHHHHHHHHHHhCCCeEeecCC
Confidence 34567899998888888888998888 79999999999999999999877664
No 54
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=96.19 E-value=0.22 Score=36.78 Aligned_cols=51 Identities=14% Similarity=0.239 Sum_probs=44.4
Q ss_pred hHHHHHHHHHHhcCCCCcHHHHHHHHhcccccHHHHHHHHHHHHHcCCcceeec
Q 027236 7 NTEAIVLNYVNEQNRPLNSQNVADALQKYNLKKAGIQKALDSLADNGKISFKEY 60 (226)
Q Consensus 7 ea~~~Il~y~~~~nrPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~K~~ 60 (226)
..+-.||.++...+.|-+..+|...+ ++++++|..+|+.|++.|+|....-
T Consensus 37 ~~~~~iL~~l~~~~~~~t~~~la~~l---~~s~~~vs~~l~~L~~~glv~r~~~ 87 (146)
T 2fbh_A 37 QARWLVLLHLARHRDSPTQRELAQSV---GVEGPTLARLLDGLESQGLVRRLAV 87 (146)
T ss_dssp TTHHHHHHHHHHCSSCCBHHHHHHHH---TCCHHHHHHHHHHHHHTTSEEEECC
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHh---CCChhhHHHHHHHHHHCCCeeecCC
Confidence 45667899995678899999999988 7999999999999999999988754
No 55
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=96.19 E-value=0.022 Score=40.17 Aligned_cols=59 Identities=12% Similarity=0.099 Sum_probs=47.3
Q ss_pred hHHHHHHHHHHhcCCC---CcHHHHHHHHhcccccHHHHHHHHHHHHHcCCcceeecCceeEEEe
Q 027236 7 NTEAIVLNYVNEQNRP---LNSQNVADALQKYNLKKAGIQKALDSLADNGKISFKEYGKQKIYIA 68 (226)
Q Consensus 7 ea~~~Il~y~~~~nrP---ys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~K~~GK~kiY~~ 68 (226)
...-.||.++...+.| .+..+|...+ ++++++|..+|+.|.+.|+|....-|..++|..
T Consensus 12 ~~~~~iL~~l~~~~~~~~~~t~~eLa~~l---~i~~~tvs~~l~~Le~~Glv~~~~d~R~~~v~L 73 (95)
T 2qvo_A 12 EKALEILMTIYYESLGGNDVYIQYIASKV---NSPHSYVWLIIKKFEEAKMVECELEGRTKIIRL 73 (95)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEHHHHHHHS---SSCHHHHHHHHHHHHHTTSEEEEEETTEEEEEE
T ss_pred hhHHHHHHHHHHccCCCCCcCHHHHHHHH---CcCHHHHHHHHHHHHHCcCccCCCCCCeEEEEE
Confidence 3445567777655556 8999998877 799999999999999999997667777777776
No 56
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=96.19 E-value=0.049 Score=40.08 Aligned_cols=52 Identities=15% Similarity=0.275 Sum_probs=44.5
Q ss_pred chHHHHHHHHHHhcCCCCcHHHHHHHHhcccccHHHHHHHHHHHHHcCCcceeecC
Q 027236 6 DNTEAIVLNYVNEQNRPLNSQNVADALQKYNLKKAGIQKALDSLADNGKISFKEYG 61 (226)
Q Consensus 6 ~ea~~~Il~y~~~~nrPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~K~~G 61 (226)
...+-.||.++.. +.|.+..+|.+.+ ++++++|..+|+.|++.|+|....-+
T Consensus 28 ~~~~~~iL~~l~~-~~~~~~~ela~~l---~~s~~tvs~~l~~L~~~glv~~~~~~ 79 (138)
T 3bpv_A 28 TDAQVACLLRIHR-EPGIKQDELATFF---HVDKGTIARTLRRLEESGFIEREQDP 79 (138)
T ss_dssp CHHHHHHHHHHHH-STTCBHHHHHHHH---TCCHHHHHHHHHHHHHTTSEEEEEET
T ss_pred CHHHHHHHHHHHH-cCCCCHHHHHHHH---CCCHHHHHHHHHHHHHCCCEEeecCC
Confidence 3456778888887 4789999999988 79999999999999999999987543
No 57
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=96.06 E-value=0.2 Score=37.67 Aligned_cols=50 Identities=24% Similarity=0.325 Sum_probs=43.0
Q ss_pred hHHHHHHHHHHhcCCCCcHHHHHHHHhcccccHHHHHHHHHHHHHcCCcceeec
Q 027236 7 NTEAIVLNYVNEQNRPLNSQNVADALQKYNLKKAGIQKALDSLADNGKISFKEY 60 (226)
Q Consensus 7 ea~~~Il~y~~~~nrPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~K~~ 60 (226)
..+-.||.++.... |.+..+|.+.+ ++++++|..+|+.|++.|+|....-
T Consensus 44 ~~~~~iL~~l~~~~-~~t~~ela~~l---~is~~tvs~~l~~Le~~Gli~r~~~ 93 (154)
T 2eth_A 44 TTELYAFLYVALFG-PKKMKEIAEFL---STTKSNVTNVVDSLEKRGLVVREMD 93 (154)
T ss_dssp HHHHHHHHHHHHHC-CBCHHHHHHHT---TSCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred HHHHHHHHHHHHcC-CCCHHHHHHHH---CCCHHHHHHHHHHHHHCCCEEeeCC
Confidence 45667888888654 89999999887 7999999999999999999998754
No 58
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=96.04 E-value=0.045 Score=41.29 Aligned_cols=50 Identities=16% Similarity=0.266 Sum_probs=41.3
Q ss_pred hHHHHHHHHHHhcCCCCcHHHHHHHHhcccccHHHHHHHHHHHHHcCCcceeec
Q 027236 7 NTEAIVLNYVNEQNRPLNSQNVADALQKYNLKKAGIQKALDSLADNGKISFKEY 60 (226)
Q Consensus 7 ea~~~Il~y~~~~nrPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~K~~ 60 (226)
..+-.||.++... .|.+..+|...+ ++++++|..+|+.|++.|+|....-
T Consensus 41 ~~q~~iL~~l~~~-~~~~~~eLa~~l---~~~~~~vs~~l~~L~~~Glv~r~~~ 90 (149)
T 4hbl_A 41 YSQYLVMLTLWEE-NPQTLNSIGRHL---DLSSNTLTPMLKRLEQSGWVKRERQ 90 (149)
T ss_dssp HHHHHHHHHHHHS-SSEEHHHHHHHH---TCCHHHHHHHHHHHHHHTSEEC---
T ss_pred HHHHHHHHHHHHC-CCCCHHHHHHHH---CCCHHHHHHHHHHHHHCCCEeeCCC
Confidence 4556788888764 789999999988 7999999999999999999998754
No 59
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=95.83 E-value=0.1 Score=38.46 Aligned_cols=51 Identities=10% Similarity=0.213 Sum_probs=44.0
Q ss_pred hHHHHHHHHHHhcCC-CCcHHHHHHHHhcccccHHHHHHHHHHHHHcCCcceeec
Q 027236 7 NTEAIVLNYVNEQNR-PLNSQNVADALQKYNLKKAGIQKALDSLADNGKISFKEY 60 (226)
Q Consensus 7 ea~~~Il~y~~~~nr-Pys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~K~~ 60 (226)
..+-.||.++..... |-+..+|...+ ++++++|..+|+.|++.|+|....-
T Consensus 34 ~~~~~iL~~l~~~~~~~~~~~ela~~l---~~~~~tvs~~l~~Le~~Gli~r~~~ 85 (141)
T 3bro_A 34 GTQMTIIDYLSRNKNKEVLQRDLESEF---SIKSSTATVLLQRMEIKKLLYRKVS 85 (141)
T ss_dssp HHHHHHHHHHHHTTTSCCBHHHHHHHH---TCCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred HHHHHHHHHHHHCCCCCcCHHHHHHHH---CCCcchHHHHHHHHHHCCCEEeeCC
Confidence 456678888887654 89999999988 7999999999999999999988764
No 60
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=95.69 E-value=0.05 Score=39.65 Aligned_cols=58 Identities=17% Similarity=0.381 Sum_probs=50.7
Q ss_pred chHHHHHHHHHHhcCCCCcHHHHHHHHhcccccHHHHHHHHHHHHHcCCcceeecCceeEEEe
Q 027236 6 DNTEAIVLNYVNEQNRPLNSQNVADALQKYNLKKAGIQKALDSLADNGKISFKEYGKQKIYIA 68 (226)
Q Consensus 6 ~ea~~~Il~y~~~~nrPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~K~~GK~kiY~~ 68 (226)
+..+-.|+.++.. .|.++.+|...+ ++++++|...|..|.+.|+|....-|+..+|..
T Consensus 31 ~~~~~~il~~L~~--~~~s~~ela~~l---~is~stvsr~l~~Le~~Glv~~~~~~r~~~~~~ 88 (119)
T 2lkp_A 31 TPSRLMILTQLRN--GPLPVTDLAEAI---GMEQSAVSHQLRVLRNLGLVVGDRAGRSIVYSL 88 (119)
T ss_dssp CHHHHHHHHHHHH--CCCCHHHHHHHH---SSCHHHHHHHHHHHHHHCSEEEEEETTEEEEEE
T ss_pred CHHHHHHHHHHHH--CCCCHHHHHHHH---CcCHHHHHHHHHHHHHCCCEEEEecCCEEEEEE
Confidence 4456778888886 689999999988 799999999999999999999988888877777
No 61
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=95.66 E-value=0.19 Score=37.29 Aligned_cols=50 Identities=16% Similarity=0.244 Sum_probs=41.2
Q ss_pred hHHHHHHHHHHh---cCCCCcHHHHHHHHhcccccHHHHHHHHHHHHHcCCcceee
Q 027236 7 NTEAIVLNYVNE---QNRPLNSQNVADALQKYNLKKAGIQKALDSLADNGKISFKE 59 (226)
Q Consensus 7 ea~~~Il~y~~~---~nrPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~K~ 59 (226)
.....+|.++.. .+.|.+..+|...+ +|++++|.++|+.|.+.|+|....
T Consensus 13 ~~~~~~L~~l~~l~~~~~~~s~~ela~~l---~is~~tv~~~l~~Le~~Gli~r~~ 65 (139)
T 2x4h_A 13 RREFSYLLTIKRYNDSGEGAKINRIAKDL---KIAPSSVFEEVSHLEEKGLVKKKE 65 (139)
T ss_dssp HHHHHHHHHHHHHHTTTSCBCHHHHHHHH---TCCHHHHHHHHHHHHHTTSEEEET
T ss_pred HHHHHHHHHHHHHHhcCCCcCHHHHHHHh---CCChHHHHHHHHHHHHCCCEEecC
Confidence 345556666553 67899999999988 799999999999999999998765
No 62
>2vxz_A Pyrsv_GP04; viral protein, SSPF, ORF165A; 1.7A {Pyrobaculum spherical virus}
Probab=95.60 E-value=0.13 Score=39.82 Aligned_cols=63 Identities=11% Similarity=0.134 Sum_probs=52.4
Q ss_pred CCCCc----chHHHHHHHHHHhcCCCCcHHHHHHHHhcccccHHHHHHHHHHHHHcCCcceeecCceeEEEe
Q 027236 1 MAPKS----DNTEAIVLNYVNEQNRPLNSQNVADALQKYNLKKAGIQKALDSLADNGKISFKEYGKQKIYIA 68 (226)
Q Consensus 1 M~~kg----~ea~~~Il~y~~~~nrPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~K~~GK~kiY~~ 68 (226)
||.|- -+-+..||+||. --|-+...|...| |++=.+++-+|-.|.-+|.|..-++||..|++.
T Consensus 1 MPrk~Td~v~erk~~ILE~Lk--~G~~~t~~Iak~L---GlShg~aq~~Ly~LeREG~V~~Vk~GK~ayw~L 67 (165)
T 2vxz_A 1 MPIGHSREVLVRLRDILALLA--DGCKTTSLIQQRL---GLSHGRAKALIYVLEKEGRVTRVAFGNVALVCL 67 (165)
T ss_dssp ----CCHHHHHHHHHHHHHHT--TCCEEHHHHHHHH---TCCHHHHHHHHHHHHHTTSCEEEEETTEEEEES
T ss_pred CCcchhHHHHHHHHHHHHHHH--hCCccHHHHHHHh---CCcHHHHHHHHHHHHhcCceEEEEEccEEEEEe
Confidence 66553 477899999999 6788877788777 899999999999999999999999999987776
No 63
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=95.58 E-value=0.36 Score=35.76 Aligned_cols=50 Identities=18% Similarity=0.250 Sum_probs=42.3
Q ss_pred hHHHHHHHHHHhcCCCCcHHHHHHHHhcccccHHHHHHHHHHHHHcCCcceeec
Q 027236 7 NTEAIVLNYVNEQNRPLNSQNVADALQKYNLKKAGIQKALDSLADNGKISFKEY 60 (226)
Q Consensus 7 ea~~~Il~y~~~~nrPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~K~~ 60 (226)
..+-.||.++.... |-+..+|...+ ++++++|..+|+.|++.|+|....-
T Consensus 31 ~~q~~iL~~l~~~~-~~t~~eLa~~l---~~~~~tvs~~l~~Le~~Glv~r~~~ 80 (145)
T 3g3z_A 31 YNLFAVLYTLATEG-SRTQKHIGEKW---SLPKQTVSGVCKTLAGQGLIEWQEG 80 (145)
T ss_dssp HHHHHHHHHHHHHC-SBCHHHHHHHH---TCCHHHHHHHHHHHHHTTSEEECCC
T ss_pred HHHHHHHHHHHHCC-CCCHHHHHHHH---CCCHHHHHHHHHHHHHCCCEeeccC
Confidence 45667888887654 79999999888 7999999999999999999997544
No 64
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=95.55 E-value=0.071 Score=39.83 Aligned_cols=51 Identities=20% Similarity=0.309 Sum_probs=41.8
Q ss_pred chHHHHHHHHHHhcCCCCcHHHHHHHHhcccccHHHHHHHHHHHHHcCCcceeec
Q 027236 6 DNTEAIVLNYVNEQNRPLNSQNVADALQKYNLKKAGIQKALDSLADNGKISFKEY 60 (226)
Q Consensus 6 ~ea~~~Il~y~~~~nrPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~K~~ 60 (226)
...+-.||.++.... |.+..+|...+ ++++++|..+|+.|++.|+|....-
T Consensus 39 ~~~~~~iL~~l~~~~-~~t~~ela~~l---~~~~~tvs~~l~~Le~~Glv~r~~~ 89 (148)
T 3nrv_A 39 GMTEWRIISVLSSAS-DCSVQKISDIL---GLDKAAVSRTVKKLEEKKYIEVNGH 89 (148)
T ss_dssp CHHHHHHHHHHHHSS-SBCHHHHHHHH---TCCHHHHHHHHHHHHHTTSEEC---
T ss_pred CHHHHHHHHHHHcCC-CCCHHHHHHHH---CCCHHHHHHHHHHHHHCCCEEeecC
Confidence 345667888887655 99999999888 7999999999999999999987744
No 65
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=95.54 E-value=0.48 Score=34.98 Aligned_cols=59 Identities=15% Similarity=0.231 Sum_probs=46.5
Q ss_pred hHHHHHHHHHHhcCCCCcHHHHHHHHhcccccHHHHHHHHHHHHHcCCcceeec---CceeEEEe
Q 027236 7 NTEAIVLNYVNEQNRPLNSQNVADALQKYNLKKAGIQKALDSLADNGKISFKEY---GKQKIYIA 68 (226)
Q Consensus 7 ea~~~Il~y~~~~nrPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~K~~---GK~kiY~~ 68 (226)
..+-.||.++...+.|.+..+|...+ ++++++|..+|+.|++.|+|..... |...+|..
T Consensus 35 ~~~~~iL~~l~~~~~~~~~~~la~~l---~i~~~~vs~~l~~Le~~glv~r~~~~~d~R~~~~~l 96 (147)
T 2hr3_A 35 FSQLVVLGAIDRLGGDVTPSELAAAE---RMRSSNLAALLRELERGGLIVRHADPQDGRRTRVSL 96 (147)
T ss_dssp HHHHHHHHHHHHTTSCBCHHHHHHHT---TCCHHHHHHHHHHHHHTTSEEEEC------CCEEEE
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHh---CCChhhHHHHHHHHHHCCCEeeCCCCCCCCceeeEE
Confidence 45567899998767899999999887 7999999999999999999988744 34444444
No 66
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=95.54 E-value=0.069 Score=37.38 Aligned_cols=55 Identities=9% Similarity=0.032 Sum_probs=42.4
Q ss_pred HHHHHHHhcCCCCcHHHHHHHHhcccccHHH-HHHHHHHHHHcCCcceeecCceeEEEe
Q 027236 11 IVLNYVNEQNRPLNSQNVADALQKYNLKKAG-IQKALDSLADNGKISFKEYGKQKIYIA 68 (226)
Q Consensus 11 ~Il~y~~~~nrPys~~di~~~l~~~~v~K~~-v~k~L~~Lv~~g~i~~K~~GK~kiY~~ 68 (226)
.+|.++.....|.+..+|...+ ++++++ |...|+.|++.|+|.....++-.+++.
T Consensus 19 ~~L~~l~~~~~~~t~~eLa~~l---~is~~t~vs~~l~~Le~~Glv~~~~~drR~~~~~ 74 (95)
T 2pg4_A 19 PTLLEFEKKGYEPSLAEIVKAS---GVSEKTFFMGLKDRLIRAGLVKEETLSYRVKTLK 74 (95)
T ss_dssp HHHHHHHHTTCCCCHHHHHHHH---CCCHHHHHTTHHHHHHHTTSEEEEEEETTEEEEE
T ss_pred HHHHHHHhcCCCCCHHHHHHHH---CCCchHHHHHHHHHHHHCCCeecCCCCCCeEEEE
Confidence 4566676666689999999988 799999 999999999999999443433334433
No 67
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=95.34 E-value=0.13 Score=39.49 Aligned_cols=52 Identities=17% Similarity=0.223 Sum_probs=43.4
Q ss_pred hHHHHHHHHHHhc-CCCCcHHHHHHHHhcccccHHHHHHHHHHHHHcCCcceeecC
Q 027236 7 NTEAIVLNYVNEQ-NRPLNSQNVADALQKYNLKKAGIQKALDSLADNGKISFKEYG 61 (226)
Q Consensus 7 ea~~~Il~y~~~~-nrPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~K~~G 61 (226)
..+-.||.++... +.|-+..+|...+ ++++++|..+|+.|++.|+|....-.
T Consensus 46 ~~q~~vL~~l~~~~~~~~t~~eLa~~l---~~~~~tvs~~l~~Le~~Glv~r~~~~ 98 (168)
T 3u2r_A 46 AQQYNTLRLLRSVHPEGMATLQIADRL---ISRAPDITRLIDRLDDRGLVLRTRKP 98 (168)
T ss_dssp HHHHHHHHHHHHHTTSCEEHHHHHHHC------CTHHHHHHHHHHHTTSEEEEEET
T ss_pred HHHHHHHHHHHhcCCCCcCHHHHHHHH---CCChhhHHHHHHHHHHCCCEeecCCC
Confidence 4567799999987 6899999999887 79999999999999999999988764
No 68
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=95.33 E-value=0.4 Score=35.02 Aligned_cols=50 Identities=18% Similarity=0.212 Sum_probs=42.7
Q ss_pred hHHHHHHHHHHhcCCCCcHHHHHHHHhcccccHHHHHHHHHHHHHcCCcceeec
Q 027236 7 NTEAIVLNYVNEQNRPLNSQNVADALQKYNLKKAGIQKALDSLADNGKISFKEY 60 (226)
Q Consensus 7 ea~~~Il~y~~~~nrPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~K~~ 60 (226)
..+-.||.++.... |.+..+|...+ ++++++|..+|+.|++.|+|....-
T Consensus 38 ~~~~~iL~~l~~~~-~~t~~ela~~l---~~~~~tvs~~l~~L~~~glv~r~~~ 87 (140)
T 2nnn_A 38 PTQWAALVRLGETG-PCPQNQLGRLT---AMDAATIKGVVERLDKRGLIQRSAD 87 (140)
T ss_dssp HHHHHHHHHHHHHS-SBCHHHHHHHT---TCCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHHHHcC-CCCHHHHHHHH---CCCHHHHHHHHHHHHHCCCEEeeCC
Confidence 45667888887654 99999998877 7999999999999999999998754
No 69
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=95.32 E-value=0.32 Score=35.83 Aligned_cols=50 Identities=12% Similarity=0.161 Sum_probs=43.2
Q ss_pred hHHHHHHHHHHhcCCCCcHHHHHHHHhcccccHHHHHHHHHHHHHcCCcceeec
Q 027236 7 NTEAIVLNYVNEQNRPLNSQNVADALQKYNLKKAGIQKALDSLADNGKISFKEY 60 (226)
Q Consensus 7 ea~~~Il~y~~~~nrPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~K~~ 60 (226)
..+-.||.++.. +.|.+..+|...+ ++++++|..+|+.|++.|+|....-
T Consensus 33 ~~~~~iL~~l~~-~~~~~~~~la~~l---~~s~~tvs~~l~~L~~~glv~r~~~ 82 (145)
T 2a61_A 33 PAQFDILQKIYF-EGPKRPGELSVLL---GVAKSTVTGLVKRLEADGYLTRTPD 82 (145)
T ss_dssp HHHHHHHHHHHH-HCCBCHHHHHHHH---TCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred HHHHHHHHHHHH-cCCCCHHHHHHHH---CCCchhHHHHHHHHHHCCCeeecCC
Confidence 456678888876 5689999999988 7999999999999999999998764
No 70
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=95.32 E-value=0.33 Score=35.04 Aligned_cols=58 Identities=9% Similarity=0.190 Sum_probs=46.3
Q ss_pred hHHHHHHHHHHhcCCCCcHHHHHHHHhcccccHHHHHHHHHHHHHcCCcceeecC---ceeEEEe
Q 027236 7 NTEAIVLNYVNEQNRPLNSQNVADALQKYNLKKAGIQKALDSLADNGKISFKEYG---KQKIYIA 68 (226)
Q Consensus 7 ea~~~Il~y~~~~nrPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~K~~G---K~kiY~~ 68 (226)
.-.-.||.++.. .|-+..+|...+. +|++++|...|+.|.+.|+|.....+ ...+|..
T Consensus 22 ~~~~~IL~~L~~--~~~~~~eLa~~l~--~is~~tvs~~L~~Le~~GlI~r~~~~~d~r~~~~~L 82 (112)
T 1z7u_A 22 KWKLSLMDELFQ--GTKRNGELMRALD--GITQRVLTDRLREMEKDGLVHRESFNELPPRVEYTL 82 (112)
T ss_dssp TTHHHHHHHHHH--SCBCHHHHHHHST--TCCHHHHHHHHHHHHHHTSEEEEEECCSSCEEEEEE
T ss_pred ccHHHHHHHHHh--CCCCHHHHHHHhc--cCCHHHHHHHHHHHHHCCCEEEeecCCCCCeEEEEE
Confidence 344568888873 6889889988774 79999999999999999999988773 4555555
No 71
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=95.30 E-value=0.61 Score=34.62 Aligned_cols=50 Identities=16% Similarity=0.214 Sum_probs=42.9
Q ss_pred hHHHHHHHHHHhcCCCCcHHHHHHHHhcccccHHHHHHHHHHHHHcCCcceeec
Q 027236 7 NTEAIVLNYVNEQNRPLNSQNVADALQKYNLKKAGIQKALDSLADNGKISFKEY 60 (226)
Q Consensus 7 ea~~~Il~y~~~~nrPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~K~~ 60 (226)
..+-.||.++... .|.+..+|...+ ++++++|..+|+.|++.|+|.....
T Consensus 40 ~~~~~iL~~l~~~-~~~t~~ela~~l---~~~~~~vs~~l~~Le~~Glv~r~~~ 89 (152)
T 3bj6_A 40 VGQRAILEGLSLT-PGATAPQLGAAL---QMKRQYISRILQEVQRAGLIERRTN 89 (152)
T ss_dssp HHHHHHHHHHHHS-TTEEHHHHHHHH---TCCHHHHHHHHHHHHHTTSEEEECC
T ss_pred HHHHHHHHHHHhC-CCCCHHHHHHHH---CCCHHHHHHHHHHHHHCCCeeecCC
Confidence 3566788888764 489999999988 7999999999999999999998754
No 72
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=95.28 E-value=0.56 Score=35.28 Aligned_cols=49 Identities=18% Similarity=0.219 Sum_probs=40.7
Q ss_pred HHHHHHHHHHhcCCCCcHHHHHHHHhcccccHHHHHHHHHHHHHcCCcceeec
Q 027236 8 TEAIVLNYVNEQNRPLNSQNVADALQKYNLKKAGIQKALDSLADNGKISFKEY 60 (226)
Q Consensus 8 a~~~Il~y~~~~nrPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~K~~ 60 (226)
.+-.||.++.. +.|.+..+|...+ ++++++|..+|+.|++.|+|.....
T Consensus 50 ~~~~iL~~l~~-~~~~t~~ela~~l---~is~~tvs~~l~~Le~~glv~r~~~ 98 (162)
T 2fa5_A 50 PEWRVITILAL-YPGSSASEVSDRT---AMDKVAVSRAVARLLERGFIRRETH 98 (162)
T ss_dssp HHHHHHHHHHH-STTCCHHHHHHHH---TCCHHHHHHHHHHHHHTTSEEC---
T ss_pred HHHHHHHHHHh-CCCCCHHHHHHHH---CCCHHHHHHHHHHHHHCCCEeeecC
Confidence 45678888876 6799999999988 7999999999999999999987653
No 73
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=95.26 E-value=0.59 Score=34.20 Aligned_cols=51 Identities=20% Similarity=0.223 Sum_probs=44.7
Q ss_pred hHHHHHHHHHHhcC-CCCcHHHHHHHHhcccccHHHHHHHHHHHHHcCCcceeec
Q 027236 7 NTEAIVLNYVNEQN-RPLNSQNVADALQKYNLKKAGIQKALDSLADNGKISFKEY 60 (226)
Q Consensus 7 ea~~~Il~y~~~~n-rPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~K~~ 60 (226)
..+-.||.++.... .|.+..+|...+ ++++++|..+|+.|++.|+|....-
T Consensus 31 ~~~~~vL~~l~~~~~~~~t~~ela~~l---~~~~~tvs~~l~~Le~~Gli~r~~~ 82 (139)
T 3eco_A 31 NEQGHTLGYLYAHQQDGLTQNDIAKAL---QRTGPTVSNLLRNLERKKLIYRYVD 82 (139)
T ss_dssp HHHHHHHHHHHHSTTTCEEHHHHHHHH---TCCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred HHHHHHHHHHHhcCCCCcCHHHHHHHh---CCCcccHHHHHHHHHHCCCEeecCC
Confidence 45678999998875 699999999988 7999999999999999999997754
No 74
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=95.21 E-value=0.065 Score=39.75 Aligned_cols=58 Identities=16% Similarity=0.231 Sum_probs=46.3
Q ss_pred hHHHHHHHHHHhcCCCCcHHHHHHHHhcccccHHHHHHHHHHHHHcCCcceeec---CceeEEEe
Q 027236 7 NTEAIVLNYVNEQNRPLNSQNVADALQKYNLKKAGIQKALDSLADNGKISFKEY---GKQKIYIA 68 (226)
Q Consensus 7 ea~~~Il~y~~~~nrPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~K~~---GK~kiY~~ 68 (226)
..+-.||.++.. +.|.+..+|...+ ++++++|..+|+.|++.|+|..... +...+|..
T Consensus 37 ~~~~~iL~~l~~-~~~~~~~ela~~l---~~~~~tvs~~l~~L~~~gli~r~~~~~d~R~~~~~l 97 (142)
T 2bv6_A 37 YPQFLVLTILWD-ESPVNVKKVVTEL---ALDTGTVSPLLKRMEQVDLIKRERSEVDQREVFIHL 97 (142)
T ss_dssp HHHHHHHHHHHH-SSEEEHHHHHHHT---TCCTTTHHHHHHHHHHTTSEEEEECSSSTTCEEEEE
T ss_pred HHHHHHHHHHHH-cCCcCHHHHHHHH---CCChhhHHHHHHHHHHCCCEEeecCCCCcceEEEEE
Confidence 345678888876 4589999998887 7999999999999999999998776 44444444
No 75
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=95.07 E-value=0.43 Score=34.93 Aligned_cols=58 Identities=19% Similarity=0.307 Sum_probs=47.3
Q ss_pred hHHHHHHHHHHhcCCCCcHHHHHHHHhcccccHHHHHHHHHHHHHcCCcceeec---CceeEEEe
Q 027236 7 NTEAIVLNYVNEQNRPLNSQNVADALQKYNLKKAGIQKALDSLADNGKISFKEY---GKQKIYIA 68 (226)
Q Consensus 7 ea~~~Il~y~~~~nrPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~K~~---GK~kiY~~ 68 (226)
..+-.||.++... .|.+..+|...+ ++++++|..+|+.|++.|+|....- |...+|..
T Consensus 31 ~~~~~iL~~l~~~-~~~~~~ela~~l---~is~~~vs~~l~~L~~~gli~~~~~~~d~r~~~~~l 91 (142)
T 3bdd_A 31 LTRYSILQTLLKD-APLHQLALQERL---QIDRAAVTRHLKLLEESGYIIRKRNPDNQREVLVWP 91 (142)
T ss_dssp HHHHHHHHHHHHH-CSBCHHHHHHHH---TCCHHHHHHHHHHHHHTTSEEEEECSSSTTCEEEEE
T ss_pred HHHHHHHHHHHhC-CCCCHHHHHHHH---CCCHHHHHHHHHHHHHCCCEEecCCCCCCCeeEEEE
Confidence 3456788888764 589999999988 7999999999999999999998765 55555555
No 76
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=95.04 E-value=0.05 Score=40.44 Aligned_cols=56 Identities=14% Similarity=0.253 Sum_probs=43.0
Q ss_pred HHHHHHHHHhc--CCCCcHHHHHHHHhcccccHHHHHHHHHHHHHcCCcceeecCceeEEEe
Q 027236 9 EAIVLNYVNEQ--NRPLNSQNVADALQKYNLKKAGIQKALDSLADNGKISFKEYGKQKIYIA 68 (226)
Q Consensus 9 ~~~Il~y~~~~--nrPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~K~~GK~kiY~~ 68 (226)
--.|+.|+... .+|.++.+|...+ +|+...|.++|..|...|+|.... |..--|..
T Consensus 11 al~iL~~la~~~~~~~~s~~ela~~~---~i~~~~v~~il~~L~~~Glv~~~~-g~~ggy~L 68 (129)
T 2y75_A 11 GLTIMIELAKKHGEGPTSLKSIAQTN---NLSEHYLEQLVSPLRNAGLVKSIR-GAYGGYVL 68 (129)
T ss_dssp HHHHHHHHHHTTTSCCBCHHHHHHHT---TSCHHHHHHHHHHHHHTTSEEEC-----CCEEE
T ss_pred HHHHHHHHHhCCCCCcCCHHHHHHHH---CcCHHHHHHHHHHHHHCCceEecC-CCCCceEe
Confidence 34577788765 5899999998877 899999999999999999998764 65545655
No 77
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=94.92 E-value=0.58 Score=34.46 Aligned_cols=51 Identities=14% Similarity=0.144 Sum_probs=43.5
Q ss_pred chHHHHHHHHHHhcCCCCcHHHHHHHHhcccccHHHHHHHHHHHHHcCCcceeec
Q 027236 6 DNTEAIVLNYVNEQNRPLNSQNVADALQKYNLKKAGIQKALDSLADNGKISFKEY 60 (226)
Q Consensus 6 ~ea~~~Il~y~~~~nrPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~K~~ 60 (226)
...+-.||.++... .|-+..+|...+ ++++++|...|+.|++.|+|....-
T Consensus 36 t~~~~~iL~~l~~~-~~~t~~eLa~~l---~~~~~~vs~~l~~L~~~Glv~r~~~ 86 (143)
T 3oop_A 36 TPEQWSVLEGIEAN-EPISQKEIALWT---KKDTPTVNRIVDVLLRKELIVREIS 86 (143)
T ss_dssp CHHHHHHHHHHHHH-SSEEHHHHHHHH---TCCHHHHHHHHHHHHHTTSEEEEC-
T ss_pred CHHHHHHHHHHHHc-CCcCHHHHHHHH---CCCHhhHHHHHHHHHHCCCeeccCC
Confidence 35567788888765 788999999988 7999999999999999999987654
No 78
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=94.87 E-value=0.76 Score=35.08 Aligned_cols=50 Identities=16% Similarity=0.185 Sum_probs=42.7
Q ss_pred hHHHHHHHHHHhcCCCCcHHHHHHHHhcccccHHHHHHHHHHHHHcCCcceeec
Q 027236 7 NTEAIVLNYVNEQNRPLNSQNVADALQKYNLKKAGIQKALDSLADNGKISFKEY 60 (226)
Q Consensus 7 ea~~~Il~y~~~~nrPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~K~~ 60 (226)
..+-.||.++... .|-+..+|...+ ++++++|..+|+.|++.|+|....-
T Consensus 45 ~~~~~iL~~L~~~-~~~t~~eLa~~l---~is~~tvs~~l~~Le~~GlV~r~~~ 94 (168)
T 2nyx_A 45 IPQFRTLVILSNH-GPINLATLATLL---GVQPSATGRMVDRLVGAELIDRLPH 94 (168)
T ss_dssp HHHHHHHHHHHHH-CSEEHHHHHHHH---TSCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred HHHHHHHHHHHHc-CCCCHHHHHHHh---CCCHHHHHHHHHHHHHCCCEEeccC
Confidence 3456788888764 489999999988 7999999999999999999988654
No 79
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=94.79 E-value=0.88 Score=33.82 Aligned_cols=50 Identities=16% Similarity=0.279 Sum_probs=42.7
Q ss_pred hHHHHHHHHHHhcCCCCcHHHHHHHHhcccccHHHHHHHHHHHHHcCCcceeec
Q 027236 7 NTEAIVLNYVNEQNRPLNSQNVADALQKYNLKKAGIQKALDSLADNGKISFKEY 60 (226)
Q Consensus 7 ea~~~Il~y~~~~nrPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~K~~ 60 (226)
..+-.||.++.. +.|.+..+|...+ ++++++|..+|+.|++.|+|.....
T Consensus 37 ~~~~~iL~~l~~-~~~~t~~ela~~l---~~s~~tvs~~l~~Le~~glv~r~~~ 86 (155)
T 1s3j_A 37 PAQLFVLASLKK-HGSLKVSEIAERM---EVKPSAVTLMADRLEQKNLIARTHN 86 (155)
T ss_dssp HHHHHHHHHHHH-HSEEEHHHHHHHH---TSCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred HHHHHHHHHHHH-cCCCCHHHHHHHH---CCCHHHHHHHHHHHHHCCCEeecCC
Confidence 345678888876 4589999999988 7999999999999999999998765
No 80
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=94.73 E-value=0.1 Score=37.53 Aligned_cols=58 Identities=14% Similarity=0.221 Sum_probs=47.4
Q ss_pred hHHHHHHHHHHhcCCCCcHHHHHHHHhcccccHHHHHHHHHHHHHcCCcceeec---CceeEEEe
Q 027236 7 NTEAIVLNYVNEQNRPLNSQNVADALQKYNLKKAGIQKALDSLADNGKISFKEY---GKQKIYIA 68 (226)
Q Consensus 7 ea~~~Il~y~~~~nrPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~K~~---GK~kiY~~ 68 (226)
.-+-.||.++. +.|-+..+|...+. +++++++...|+.|.+.|+|..... +...+|..
T Consensus 14 ~~~~~IL~~L~--~~~~~~~eLa~~l~--~is~~tls~~L~~Le~~GlI~r~~~~~d~r~~~y~L 74 (107)
T 2hzt_A 14 KWKXVILXHLT--HGKKRTSELKRLMP--NITQKMLTQQLRELEADGVINRIVYNQVPPKVEYEL 74 (107)
T ss_dssp TTHHHHHHHHT--TCCBCHHHHHHHCT--TSCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEE
T ss_pred ccHHHHHHHHH--hCCCCHHHHHHHhc--CCCHHHHHHHHHHHHHCCCEEEeecCCCCCeEEEEE
Confidence 33456888885 67999999988774 7999999999999999999998877 45566666
No 81
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=94.72 E-value=0.56 Score=34.92 Aligned_cols=51 Identities=24% Similarity=0.230 Sum_probs=43.4
Q ss_pred hHHHHHHHHHHhcCCCCcHHHHHHHHhcccccHHHHHHHHHHHHHcCCcceeec
Q 027236 7 NTEAIVLNYVNEQNRPLNSQNVADALQKYNLKKAGIQKALDSLADNGKISFKEY 60 (226)
Q Consensus 7 ea~~~Il~y~~~~nrPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~K~~ 60 (226)
..+-.||.++.....|.+..+|...+ ++++++|..+|+.|++.|+|....-
T Consensus 39 ~~q~~vL~~l~~~~~~~t~~eLa~~l---~i~~~tvs~~l~~Le~~Glv~r~~~ 89 (150)
T 3fm5_A 39 VRSYSVLVLACEQAEGVNQRGVAATM---GLDPSQIVGLVDELEERGLVVRTLD 89 (150)
T ss_dssp HHHHHHHHHHHHSTTCCCSHHHHHHH---TCCHHHHHHHHHHHHTTTSEEC---
T ss_pred HHHHHHHHHHHhCCCCcCHHHHHHHH---CCCHhHHHHHHHHHHHCCCEEeeCC
Confidence 45677899998888899999999988 7999999999999999999987654
No 82
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=94.63 E-value=0.46 Score=35.29 Aligned_cols=50 Identities=12% Similarity=0.274 Sum_probs=39.9
Q ss_pred hHHHHHHHHHHhcCCCCcHHHHHHHHhcccccHHHHHHHHHHHHHcCCcceeec
Q 027236 7 NTEAIVLNYVNEQNRPLNSQNVADALQKYNLKKAGIQKALDSLADNGKISFKEY 60 (226)
Q Consensus 7 ea~~~Il~y~~~~nrPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~K~~ 60 (226)
+.-..|+.++. .+.|-+..+|...+ +|++++|.++|+.|.+.|+|.....
T Consensus 8 ~~L~~i~~l~~-~~~~~~~~ela~~l---~vs~~tvs~~l~~Le~~Glv~r~~~ 57 (142)
T 1on2_A 8 MYIEQIYMLIE-EKGYARVSDIAEAL---AVHPSSVTKMVQKLDKDEYLIYEKY 57 (142)
T ss_dssp HHHHHHHHHHH-HHSSCCHHHHHHHH---TSCHHHHHHHHHHHHHTTSEEEETT
T ss_pred HHHHHHHHHHh-hcCCCCHHHHHHHh---CCCHHHHHHHHHHHHHCCCEEEeeC
Confidence 33444555543 46689999999988 7999999999999999999988754
No 83
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=94.59 E-value=0.091 Score=37.19 Aligned_cols=60 Identities=30% Similarity=0.432 Sum_probs=49.0
Q ss_pred chHHHHHHHHHHh-cCCCCcHHHHHHHHhcccccHHHHHHHHHHHHHcCCcc-eeec--CceeEEEe
Q 027236 6 DNTEAIVLNYVNE-QNRPLNSQNVADALQKYNLKKAGIQKALDSLADNGKIS-FKEY--GKQKIYIA 68 (226)
Q Consensus 6 ~ea~~~Il~y~~~-~nrPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~-~K~~--GK~kiY~~ 68 (226)
...+-.||.++.. .|.--+..+|...+ ++.+++|.++|+.|...|+|. .+.+ -+.++|..
T Consensus 19 t~~q~~Vl~~I~~~g~~gi~qkeLa~~~---~l~~~tvt~iLk~LE~kglIkr~~~~~~~~rKvy~L 82 (91)
T 2dk5_A 19 DNQEKLVYQIIEDAGNKGIWSRDVRYKS---NLPLTEINKILKNLESKKLIKAVKSVAASKKKVYML 82 (91)
T ss_dssp CSSHHHHHHHHHHHCTTCEEHHHHHHHT---TCCHHHHHHHHHHHHHTTSEEEECCSSCSSCCEEEE
T ss_pred CHHHHHHHHHHHHcCCCCcCHHHHHHHH---CCCHHHHHHHHHHHHHCCCEEEecCCCCCCcEEEEE
Confidence 4567889999997 46678888898877 789999999999999999998 4444 35688877
No 84
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=94.58 E-value=0.79 Score=32.33 Aligned_cols=48 Identities=17% Similarity=0.104 Sum_probs=37.3
Q ss_pred HHHHHHHhcCCCCcHHHHHHHHhcccccHHHHHHHHHHHHHcCCcceeecCceeEEEe
Q 027236 11 IVLNYVNEQNRPLNSQNVADALQKYNLKKAGIQKALDSLADNGKISFKEYGKQKIYIA 68 (226)
Q Consensus 11 ~Il~y~~~~nrPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~K~~GK~kiY~~ 68 (226)
.||.++. ..-+..+|...+ +++-..+.+.|+.|.+.|+|.....| |..
T Consensus 12 ~IL~~i~---~~~~~t~La~~~---~ls~~~~~~~l~~L~~~GLI~~~~~~----~~L 59 (95)
T 1r7j_A 12 AILEACK---SGSPKTRIMYGA---NLSYALTGRYIKMLMDLEIIRQEGKQ----YML 59 (95)
T ss_dssp HHHHHHT---TCBCHHHHHHHH---TCCHHHHHHHHHHHHHTTSEEEETTE----EEE
T ss_pred HHHHHHH---cCCCHHHHHHHh---CcCHHHHHHHHHHHHHCCCeEEECCe----eEE
Confidence 3455554 226777887777 89999999999999999999988554 666
No 85
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=94.55 E-value=1.1 Score=33.72 Aligned_cols=49 Identities=18% Similarity=0.271 Sum_probs=42.1
Q ss_pred HHHHHHHHHHhcCCCCcHHHHHHHHhcccccHHHHHHHHHHHHHcCCcceeec
Q 027236 8 TEAIVLNYVNEQNRPLNSQNVADALQKYNLKKAGIQKALDSLADNGKISFKEY 60 (226)
Q Consensus 8 a~~~Il~y~~~~nrPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~K~~ 60 (226)
.+-.||.++.. +.|-+..+|...+ ++++++|..+|+.|++.|+|....-
T Consensus 51 ~q~~vL~~l~~-~~~~t~~eLa~~l---~~~~~tvs~~l~~Le~~Glv~r~~~ 99 (159)
T 3s2w_A 51 GQFPFLMRLYR-EDGINQESLSDYL---KIDKGTTARAIQKLVDEGYVFRQRD 99 (159)
T ss_dssp TTHHHHHHHHH-SCSEEHHHHHHHH---TCCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred HHHHHHHHHHH-CCCCCHHHHHHHH---CCCHHHHHHHHHHHHHCCCEEEecC
Confidence 44568888876 4789999999888 7999999999999999999998764
No 86
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=94.53 E-value=0.32 Score=36.44 Aligned_cols=57 Identities=11% Similarity=0.189 Sum_probs=46.6
Q ss_pred HHHHHHHHHHhcCCCCcHHHHHHHHhcccccHHHHHHHHHHHHHcCCcceeec---CceeEEEe
Q 027236 8 TEAIVLNYVNEQNRPLNSQNVADALQKYNLKKAGIQKALDSLADNGKISFKEY---GKQKIYIA 68 (226)
Q Consensus 8 a~~~Il~y~~~~nrPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~K~~---GK~kiY~~ 68 (226)
-+-.||.++. +.|.+..+|...+. ||+++++...|+.|.+.|+|....+ +...+|..
T Consensus 36 w~l~IL~~L~--~g~~~~~eLa~~l~--gis~~tls~~L~~Le~~GlV~r~~~~~d~r~~~y~L 95 (131)
T 1yyv_A 36 WGVLILVALR--DGTHRFSDLRRXMG--GVSEXMLAQSLQALEQDGFLNRVSYPVVPPHVEYSL 95 (131)
T ss_dssp HHHHHHHHGG--GCCEEHHHHHHHST--TCCHHHHHHHHHHHHHHTCEEEEEECSSSCEEEEEE
T ss_pred cHHHHHHHHH--cCCCCHHHHHHHhc--cCCHHHHHHHHHHHHHCCcEEEEecCCCCCeEEEEE
Confidence 3456788876 67899989988774 6999999999999999999998887 45566666
No 87
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=94.53 E-value=0.4 Score=34.66 Aligned_cols=58 Identities=9% Similarity=0.254 Sum_probs=47.5
Q ss_pred chHHHHHHHHHHhcCCCCc--HHHHHHHHhcccccHHHHHHHHHHHHHcCCcceeecCceeEEEe
Q 027236 6 DNTEAIVLNYVNEQNRPLN--SQNVADALQKYNLKKAGIQKALDSLADNGKISFKEYGKQKIYIA 68 (226)
Q Consensus 6 ~ea~~~Il~y~~~~nrPys--~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~K~~GK~kiY~~ 68 (226)
+.-+-.|+.++. ..|.+ ..+|...++ ||+.+++...|+.|.+.|+|....+ ...+|..
T Consensus 26 ~~wrl~IL~~L~--~g~~~~~~~eL~~~l~--gis~~~ls~~L~~Le~~GlV~r~~~-r~~~y~L 85 (111)
T 3df8_A 26 KKYTMLIISVLG--NGSTRQNFNDIRSSIP--GISSTILSRRIKDLIDSGLVERRSG-QITTYAL 85 (111)
T ss_dssp STTHHHHHHHHT--SSSSCBCHHHHHHTST--TCCHHHHHHHHHHHHHTTSEEEEES-SSEEEEE
T ss_pred CccHHHHHHHHh--cCCCCCCHHHHHHHcc--CCCHHHHHHHHHHHHHCCCEEEeec-CcEEEEE
Confidence 344567888886 56777 999988774 7999999999999999999999988 5566655
No 88
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=94.52 E-value=0.31 Score=35.82 Aligned_cols=51 Identities=24% Similarity=0.348 Sum_probs=42.8
Q ss_pred hHHHHHHHHHHhc-CCCCcHHHHHHHHhcccccHHHHHHHHHHHHHcCCcceeec
Q 027236 7 NTEAIVLNYVNEQ-NRPLNSQNVADALQKYNLKKAGIQKALDSLADNGKISFKEY 60 (226)
Q Consensus 7 ea~~~Il~y~~~~-nrPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~K~~ 60 (226)
..+-.||.++... ..|.+..+|...+ ++++++|..+|+.|++.|+|....-
T Consensus 37 ~~q~~vL~~l~~~~~~~~t~~eLa~~l---~~~~~tvs~~l~~Le~~Glv~r~~~ 88 (127)
T 2frh_A 37 FEEFAVLTYISENKEKEYYLKDIINHL---NYKQPQVVKAVKILSQEDYFDKKRN 88 (127)
T ss_dssp HHHHHHHHHHHHTCCSEEEHHHHHHHS---SSHHHHHHHHHHHHHHTTSSCCBCC
T ss_pred HHHHHHHHHHHhccCCCcCHHHHHHHH---CCCHHHHHHHHHHHHHCCCEEecCC
Confidence 4566788888864 2789999998877 7999999999999999999987544
No 89
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=94.52 E-value=0.85 Score=33.11 Aligned_cols=50 Identities=4% Similarity=0.153 Sum_probs=42.6
Q ss_pred hHHHHHHHHHHhcCCCCcHHHHHHHHhcccccHHHHHHHHHHHHHcCCcceeec
Q 027236 7 NTEAIVLNYVNEQNRPLNSQNVADALQKYNLKKAGIQKALDSLADNGKISFKEY 60 (226)
Q Consensus 7 ea~~~Il~y~~~~nrPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~K~~ 60 (226)
..+-.||.++.. +.|-+..+|...+ ++++++|..+|+.|++.|+|.....
T Consensus 33 ~~~~~iL~~l~~-~~~~~~~ela~~l---~~~~~tvs~~l~~L~~~gli~r~~~ 82 (139)
T 3bja_A 33 YVQFGVIQVLAK-SGKVSMSKLIENM---GCVPSNMTTMIQRMKRDGYVMTEKN 82 (139)
T ss_dssp HHHHHHHHHHHH-SCSEEHHHHHHHC---SSCCTTHHHHHHHHHHTTSEEEEEC
T ss_pred HHHHHHHHHHHH-cCCcCHHHHHHHH---CCChhHHHHHHHHHHHCCCeeeccC
Confidence 456678888876 5689999998877 7999999999999999999988654
No 90
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=94.51 E-value=0.4 Score=36.06 Aligned_cols=51 Identities=10% Similarity=0.139 Sum_probs=43.3
Q ss_pred hHHHHHHHHHHhcCCCCcHHHHHHHHhcccccHHHHHHHHHHHHHcCCcceeec
Q 027236 7 NTEAIVLNYVNEQNRPLNSQNVADALQKYNLKKAGIQKALDSLADNGKISFKEY 60 (226)
Q Consensus 7 ea~~~Il~y~~~~nrPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~K~~ 60 (226)
..+-.||.++...+.|-+..+|...+ ++++++|...|+.|++.|+|.....
T Consensus 47 ~~~~~iL~~L~~~~~~~~~~ela~~l---~i~~~tvs~~l~~Le~~Gli~r~~~ 97 (160)
T 3boq_A 47 LAKFDAMAQLARNPDGLSMGKLSGAL---KVTNGNVSGLVNRLIKDGMVVKAMS 97 (160)
T ss_dssp HHHHHHHHHHHHCTTCEEHHHHHHHC---SSCCSCHHHHHHHHHHHTSEEEC--
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHH---CCChhhHHHHHHHHHHCCCEEeecC
Confidence 34667899997678899999998887 7999999999999999999988654
No 91
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=94.44 E-value=1.1 Score=33.17 Aligned_cols=50 Identities=14% Similarity=0.242 Sum_probs=42.9
Q ss_pred hHHHHHHHHHHhcCCCCcHHHHHHHHhcccccHHHHHHHHHHHHHcCCcceeec
Q 027236 7 NTEAIVLNYVNEQNRPLNSQNVADALQKYNLKKAGIQKALDSLADNGKISFKEY 60 (226)
Q Consensus 7 ea~~~Il~y~~~~nrPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~K~~ 60 (226)
..+-.||.++... .|-+..+|...+ ++++++|..+|+.|++.|+|....-
T Consensus 42 ~~~~~iL~~l~~~-~~~t~~ela~~l---~~~~~tvs~~l~~Le~~Glv~r~~~ 91 (150)
T 2rdp_A 42 PPQFVALQWLLEE-GDLTVGELSNKM---YLACSTTTDLVDRMERNGLVARVRD 91 (150)
T ss_dssp HHHHHHHHHHHHH-CSBCHHHHHHHH---TCCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred HHHHHHHHHHHHc-CCCCHHHHHHHH---CCCchhHHHHHHHHHHCCCeeecCC
Confidence 4566788888874 589999999888 7999999999999999999998754
No 92
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=94.42 E-value=0.32 Score=40.67 Aligned_cols=63 Identities=13% Similarity=0.256 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCH-----HHHHHHHHHHHHHHHHHHHHHHHhh
Q 027236 81 LNQMKEENAKLQEQLEEQRKAISKLEGEIRTLQSNLTL-----EQIREKEAQLVKEVKEMENKLAKLR 143 (226)
Q Consensus 81 ~~~l~~~i~~l~~~l~~l~~~~k~l~~el~~l~~~~t~-----~el~~~i~~L~~e~~~l~~kL~~l~ 143 (226)
+..+|.+|..+...+..+..++..++.+++.+...... .++...+..++.++.....++..++
T Consensus 13 LQ~lD~~i~~l~~~~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~ 80 (256)
T 3na7_A 13 ISHLDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQ 80 (256)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555554444444444444444444433222 4455555555555555555555554
No 93
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=94.37 E-value=1.2 Score=33.47 Aligned_cols=50 Identities=14% Similarity=0.173 Sum_probs=42.7
Q ss_pred hHHHHHHHHHHhcCCCCcHHHHHHHHhcccccHHHHHHHHHHHHHcCCcceeec
Q 027236 7 NTEAIVLNYVNEQNRPLNSQNVADALQKYNLKKAGIQKALDSLADNGKISFKEY 60 (226)
Q Consensus 7 ea~~~Il~y~~~~nrPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~K~~ 60 (226)
..+-.||.++.. +.|.+..+|...+ ++++++|..+|+.|++.|+|.....
T Consensus 52 ~~~~~iL~~l~~-~~~~t~~ela~~l---~is~~tvs~~l~~Le~~Gli~r~~~ 101 (162)
T 3cjn_A 52 TAKMRALAILSA-KDGLPIGTLGIFA---VVEQSTLSRALDGLQADGLVRREVD 101 (162)
T ss_dssp HHHHHHHHHHHH-SCSEEHHHHHHHH---TCCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred HHHHHHHHHHHH-CCCCCHHHHHHHH---CCChhHHHHHHHHHHHCCCEEecCC
Confidence 356678888876 4589999999988 7999999999999999999988653
No 94
>3u1d_A Uncharacterized protein; GNTR-superfamily, structural genomics, PSI-biology, midwest for structural genomics, MCSG; 1.80A {Halomicrobium mukohataei}
Probab=94.35 E-value=0.18 Score=39.09 Aligned_cols=61 Identities=18% Similarity=0.200 Sum_probs=49.8
Q ss_pred chHHHHHHHHHHhc-CCCCcHHHHHHHHhcccccHHHHHHHHHHHHHcCCcceeecC--------ceeEEEe
Q 027236 6 DNTEAIVLNYVNEQ-NRPLNSQNVADALQKYNLKKAGIQKALDSLADNGKISFKEYG--------KQKIYIA 68 (226)
Q Consensus 6 ~ea~~~Il~y~~~~-nrPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~K~~G--------K~kiY~~ 68 (226)
+.-+..|+.++... .++.++.+|...++ +|+.++|-..|+.|++.|+|..-.++ ..++|+.
T Consensus 28 ~~tR~~IL~~Ll~~p~~~~ta~eL~~~l~--~lS~aTVyrhL~~L~eaGLV~~~~~~~~~~~rGrP~k~Y~L 97 (151)
T 3u1d_A 28 HETRLDVLHQILAQPDGVLSVEELLYRNP--DETEANLRYHVDELVDRGIVEKIPVPRAKSVDDPPTTFYAV 97 (151)
T ss_dssp CHHHHHHHHHHHHSTTSCBCHHHHHHHCT--TSCHHHHHHHHHHHHHTTSEEEEECCCCTTSSSCCCEEEEE
T ss_pred chHHHHHHHHHHcCCCCCCCHHHHHHhcC--CCCHHHHHHHHHHHHHCCCeEEeecCcCcccCCCCceEEEE
Confidence 56788999999876 46789999988763 59999999999999999999976543 3467776
No 95
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=94.32 E-value=0.89 Score=33.41 Aligned_cols=58 Identities=26% Similarity=0.421 Sum_probs=43.5
Q ss_pred chHHHHHHHHHHhcCCCCcHHHHHHHHhcccccHHHHHHHHHHHHHcCCcceeec---CceeEEEe
Q 027236 6 DNTEAIVLNYVNEQNRPLNSQNVADALQKYNLKKAGIQKALDSLADNGKISFKEY---GKQKIYIA 68 (226)
Q Consensus 6 ~ea~~~Il~y~~~~nrPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~K~~---GK~kiY~~ 68 (226)
...+-.||.++.... .+..+|.+.+ ++++++|..+|+.|++.|+|....- |...+|..
T Consensus 37 t~~~~~iL~~l~~~~--~t~~eLa~~l---~~s~~tvs~~l~~L~~~Glv~r~~~~~d~R~~~~~l 97 (146)
T 3tgn_A 37 TNTQEHILMLLSEES--LTNSELARRL---NVSQAAVTKAIKSLVKEGMLETSKDSKDARVIFYQL 97 (146)
T ss_dssp CHHHHHHHHHHTTCC--CCHHHHHHHH---TCCHHHHHHHHHHHHHTTSEEC----------CCEE
T ss_pred CHHHHHHHHHHHhCC--CCHHHHHHHH---CCCHHHHHHHHHHHHHCCCeEeccCCCCCceeEEEE
Confidence 456778999998654 9999999988 7999999999999999999988763 44444444
No 96
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=94.20 E-value=0.78 Score=34.64 Aligned_cols=49 Identities=14% Similarity=0.171 Sum_probs=41.4
Q ss_pred HHHHHHHHHHhcCCCCcHHHHHHHHhcccccHHHHHHHHHHHHHcCCcceeec
Q 027236 8 TEAIVLNYVNEQNRPLNSQNVADALQKYNLKKAGIQKALDSLADNGKISFKEY 60 (226)
Q Consensus 8 a~~~Il~y~~~~nrPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~K~~ 60 (226)
.+-.||.++.... |-+..+|...+ ++++++|..+|+.|++.|+|....-
T Consensus 54 ~q~~vL~~l~~~~-~~t~~eLa~~l---~~~~~~vs~~l~~Le~~Glv~r~~~ 102 (161)
T 3e6m_A 54 PKLRLLSSLSAYG-ELTVGQLATLG---VMEQSTTSRTVDQLVDEGLAARSIS 102 (161)
T ss_dssp HHHHHHHHHHHHS-EEEHHHHHHHT---TCCHHHHHHHHHHHHHTTSEEECC-
T ss_pred HHHHHHHHHHhCC-CCCHHHHHHHH---CCCHHHHHHHHHHHHHCCCEEeeCC
Confidence 4556888887754 89999998877 7999999999999999999998755
No 97
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=94.10 E-value=0.87 Score=33.50 Aligned_cols=50 Identities=24% Similarity=0.316 Sum_probs=38.7
Q ss_pred hHHHHHHHHHHhcCCCCcHHHHHHHHhcccccHHHHHHHHHHHHHcCCcceeec
Q 027236 7 NTEAIVLNYVNEQNRPLNSQNVADALQKYNLKKAGIQKALDSLADNGKISFKEY 60 (226)
Q Consensus 7 ea~~~Il~y~~~~nrPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~K~~ 60 (226)
..+-.||.++... .|.+..+|...+ ++++++|..+|+.|++.|+|....-
T Consensus 37 ~~~~~vL~~l~~~-~~~t~~eLa~~l---~~~~~tvs~~l~~L~~~Glv~r~~~ 86 (142)
T 3ech_A 37 PPDVHVLKLIDEQ-RGLNLQDLGRQM---CRDKALITRKIRELEGRNLVRRERN 86 (142)
T ss_dssp HHHHHHHHHHHHT-TTCCHHHHHHHH---C---CHHHHHHHHHHHTTSEEC---
T ss_pred HHHHHHHHHHHhC-CCcCHHHHHHHh---CCCHHHHHHHHHHHHHCCCEeeccC
Confidence 4567789999875 489999999988 7999999999999999999988655
No 98
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=94.03 E-value=0.13 Score=38.29 Aligned_cols=50 Identities=18% Similarity=0.280 Sum_probs=42.7
Q ss_pred hHHHHHHHHHHhcCCCCcHHHHHHHHhcccccHHHHHHHHHHHHHcCCcceeec
Q 027236 7 NTEAIVLNYVNEQNRPLNSQNVADALQKYNLKKAGIQKALDSLADNGKISFKEY 60 (226)
Q Consensus 7 ea~~~Il~y~~~~nrPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~K~~ 60 (226)
..+-.||.++.... |.+..+|...+ ++++++|..+|+.|++.|+|.....
T Consensus 40 ~~~~~iL~~l~~~~-~~~~~~la~~l---~~~~~tvs~~l~~L~~~glv~r~~~ 89 (147)
T 1z91_A 40 YPQYLALLLLWEHE-TLTVKKMGEQL---YLDSGTLTPMLKRMEQQGLITRKRS 89 (147)
T ss_dssp HHHHHHHHHHHHHS-EEEHHHHHHTT---TCCHHHHHHHHHHHHHHTSEECCBC
T ss_pred HHHHHHHHHHHHCC-CCCHHHHHHHH---CCCcCcHHHHHHHHHHCCCEEeccC
Confidence 45667888888754 88999998877 7999999999999999999988755
No 99
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=94.02 E-value=1.8 Score=34.44 Aligned_cols=52 Identities=17% Similarity=0.366 Sum_probs=45.1
Q ss_pred chHHHHHHHHHHhcCCCCcHHHHHHHHhcccccHHHHHHHHHHHHHcCCccee---ecCc
Q 027236 6 DNTEAIVLNYVNEQNRPLNSQNVADALQKYNLKKAGIQKALDSLADNGKISFK---EYGK 62 (226)
Q Consensus 6 ~ea~~~Il~y~~~~nrPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~K---~~GK 62 (226)
+..+..|+.++. +.|.+..+|...+ |++.++|...|+.|.+.|+|... .-|.
T Consensus 19 d~~~~~IL~~L~--~~~~s~~eLA~~l---glS~stv~~~l~~Le~~GlI~~~~~~~~~~ 73 (192)
T 1uly_A 19 EDTRRKILKLLR--NKEMTISQLSEIL---GKTPQTIYHHIEKLKEAGLVEVKRTEMKGN 73 (192)
T ss_dssp SHHHHHHHHHHT--TCCBCHHHHHHHH---TCCHHHHHHHHHHHHHTTSEEEEEEEEETT
T ss_pred CHHHHHHHHHHH--cCCCCHHHHHHHH---CcCHHHHHHHHHHHHHCCCEEEEecccccc
Confidence 566778999997 4689999999988 79999999999999999999886 4565
No 100
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=93.97 E-value=0.15 Score=36.49 Aligned_cols=56 Identities=18% Similarity=0.275 Sum_probs=45.5
Q ss_pred HHHHHHHHHhcCCCCcHHHHHHHHhcccccHHHHHHHHHHHHHcCCcceeecC---ceeEEEe
Q 027236 9 EAIVLNYVNEQNRPLNSQNVADALQKYNLKKAGIQKALDSLADNGKISFKEYG---KQKIYIA 68 (226)
Q Consensus 9 ~~~Il~y~~~~nrPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~K~~G---K~kiY~~ 68 (226)
+-.||.++. +.|-+..+|...++ |++.++|...|+.|.+.|+|.....+ ...+|..
T Consensus 27 ~~~IL~~L~--~~~~~~~eL~~~l~--gis~~~ls~~L~~Le~~GlV~r~~~~~d~r~~~y~L 85 (107)
T 2fsw_A 27 TLLIIFQIN--RRIIRYGELKRAIP--GISEKMLIDELKFLCGKGLIKKKQYPEVPPRVEYSL 85 (107)
T ss_dssp HHHHHHHHT--TSCEEHHHHHHHST--TCCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEE
T ss_pred HHHHHHHHH--hCCcCHHHHHHHcc--cCCHHHHHHHHHHHHHCCCEEEeecCCCCCeeEEEE
Confidence 446788885 67899989988773 69999999999999999999988773 4456665
No 101
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=93.90 E-value=1.8 Score=33.80 Aligned_cols=52 Identities=13% Similarity=0.201 Sum_probs=44.9
Q ss_pred hHHHHHHHHHHhc-CCCCcHHHHHHHHhcccccHHHHHHHHHHHHHcCCcceeecC
Q 027236 7 NTEAIVLNYVNEQ-NRPLNSQNVADALQKYNLKKAGIQKALDSLADNGKISFKEYG 61 (226)
Q Consensus 7 ea~~~Il~y~~~~-nrPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~K~~G 61 (226)
..+-.||.++... +.|-+..+|...+ ++++++|..+|+.|++.|+|......
T Consensus 41 ~~q~~vL~~L~~~~~~~~t~~eLa~~l---~is~~tvs~~l~~Le~~GlV~r~~~~ 93 (189)
T 3nqo_A 41 SRQYMTILSILHLPEEETTLNNIARKM---GTSKQNINRLVANLEKNGYVDVIPSP 93 (189)
T ss_dssp HHHHHHHHHHHHSCGGGCCHHHHHHHH---TSCHHHHHHHHHHHHHTTSEEEEECS
T ss_pred HHHHHHHHHHHhccCCCcCHHHHHHHH---CCCHHHHHHHHHHHHHCCCEEeccCC
Confidence 3566788999874 5799999999988 79999999999999999999987663
No 102
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=93.88 E-value=0.86 Score=33.88 Aligned_cols=47 Identities=11% Similarity=0.173 Sum_probs=41.0
Q ss_pred hHHHHHHHHHHhcCCCCcHHHHHHHHhcccccHHHHHHHHHHHHHcCCcce
Q 027236 7 NTEAIVLNYVNEQNRPLNSQNVADALQKYNLKKAGIQKALDSLADNGKISF 57 (226)
Q Consensus 7 ea~~~Il~y~~~~nrPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~ 57 (226)
..+-.||.++... .|-+..+|...+ ++++++|..+|+.|++.|+|..
T Consensus 41 ~~~~~iL~~l~~~-~~~t~~eLa~~l---~~~~~tvs~~l~~Le~~Glv~r 87 (154)
T 2qww_A 41 IQQLAMINVIYST-PGISVADLTKRL---IITGSSAAANVDGLISLGLVVK 87 (154)
T ss_dssp HHHHHHHHHHHHS-TTEEHHHHHHHH---TCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHHC-CCCCHHHHHHHH---CCCHHHHHHHHHHHHHCCCEEe
Confidence 3456788888864 689999999988 7999999999999999999988
No 103
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=93.84 E-value=0.097 Score=43.40 Aligned_cols=56 Identities=18% Similarity=0.328 Sum_probs=46.7
Q ss_pred hHHHHHHHHHHhcCCCCcHHHHHHHHhcccccHHHHHHHHHHHHHcCCcceeecCceeEEEe
Q 027236 7 NTEAIVLNYVNEQNRPLNSQNVADALQKYNLKKAGIQKALDSLADNGKISFKEYGKQKIYIA 68 (226)
Q Consensus 7 ea~~~Il~y~~~~nrPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~K~~GK~kiY~~ 68 (226)
+.--.||++|....+|.++.+|...+ ++++++|-..|..|++.|.|... ...-|..
T Consensus 8 ~r~l~iL~~l~~~~~~~~~~ela~~~---gl~~stv~r~l~~L~~~G~v~~~---~~~~Y~l 63 (249)
T 1mkm_A 8 KKAFEILDFIVKNPGDVSVSEIAEKF---NMSVSNAYKYMVVLEEKGFVLRK---KDKRYVP 63 (249)
T ss_dssp HHHHHHHHHHHHCSSCBCHHHHHHHT---TCCHHHHHHHHHHHHHTTSEEEC---TTSCEEE
T ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHH---CcCHHHHHHHHHHHHHCCcEEEC---CCCcEEE
Confidence 34457899998888899999999887 89999999999999999999876 2334655
No 104
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=93.53 E-value=0.5 Score=36.00 Aligned_cols=56 Identities=23% Similarity=0.312 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027236 85 KEENAKLQEQLEEQRKAISKLEGEIRTLQSNLTLEQIREKEAQLVKEVKEMENKLAKL 142 (226)
Q Consensus 85 ~~~i~~l~~~l~~l~~~~k~l~~el~~l~~~~t~~el~~~i~~L~~e~~~l~~kL~~l 142 (226)
..++..|..++..+..++..+..+|..+.- -.+++..++..|+.++.+|+.++..|
T Consensus 74 ~~~~~~L~~~l~~~~kE~~~lK~el~~~~~--k~e~~~~e~~~l~~~~~~l~~~~~~l 129 (138)
T 3hnw_A 74 KKMADSLSLDIENKDKEIYDLKHELIAAQI--KAESSAKEIKELKSEINKYQKNIVKL 129 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444333331 12333334444444444444444333
No 105
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=93.52 E-value=0.76 Score=31.74 Aligned_cols=66 Identities=12% Similarity=0.251 Sum_probs=36.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-----CHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027236 77 NSEELNQMKEENAKLQEQLEEQRKAISKLEGEIRTLQSNL-----TLEQIREKEAQLVKEVKEMENKLAKL 142 (226)
Q Consensus 77 ~~ee~~~l~~~i~~l~~~l~~l~~~~k~l~~el~~l~~~~-----t~~el~~~i~~L~~e~~~l~~kL~~l 142 (226)
|-+=+..+..+|..+-+.+..|+-++.+|+.+-..|.... ..+.|..++.+|+++...-+++|..|
T Consensus 4 S~ElleqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~L 74 (81)
T 2jee_A 4 SLEVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQAL 74 (81)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455677777777777766666666666655544443221 11334555555555555555555443
No 106
>2esh_A Conserved hypothetical protein TM0937; APC5794, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: a.4.5.61
Probab=93.19 E-value=0.54 Score=34.30 Aligned_cols=60 Identities=23% Similarity=0.339 Sum_probs=45.6
Q ss_pred hHHHHHHHHHHhcCCCCcHHHHHHHHhcc---c--ccH-HHHHHHHHHHHHcCCcceeec---Cce-eEEEe
Q 027236 7 NTEAIVLNYVNEQNRPLNSQNVADALQKY---N--LKK-AGIQKALDSLADNGKISFKEY---GKQ-KIYIA 68 (226)
Q Consensus 7 ea~~~Il~y~~~~nrPys~~di~~~l~~~---~--v~K-~~v~k~L~~Lv~~g~i~~K~~---GK~-kiY~~ 68 (226)
--+-.||.++.. .|-+..+|...+... . ++. .++-.+|+.|.++|+|..... |.. ++|..
T Consensus 13 ~~~~~IL~~L~~--~~~~gyel~~~l~~~g~~~~~is~~~tly~~L~~Le~~GlI~~~~~~~~~~~r~~Y~L 82 (118)
T 2esh_A 13 WLASTILLLVAE--KPSHGYELAERLAEFGIEIPGIGHMGNIYRVLADLEESGFLSTEWDTTVSPPRKIYRI 82 (118)
T ss_dssp HHHHHHHHHHHH--SCBCHHHHHHHHHTTCCSSTTCCCCCCHHHHHHHHHHTTSEEEEEECSSSSCEEEEEE
T ss_pred hHHHHHHHHHHc--CCCCHHHHHHHHHHhCCcccCCCCcchHHHHHHHHHHCCCeEEEeecCCCCCceEEEE
Confidence 455678888865 688877888877532 3 888 999999999999999998864 444 55655
No 107
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=93.17 E-value=0.22 Score=36.50 Aligned_cols=58 Identities=16% Similarity=0.287 Sum_probs=47.2
Q ss_pred chHHHHHHHHHHhcCCCCcHHHHHHHHhcccccHHHHHHHHHHHHHcCCcceeecCceeEEEe
Q 027236 6 DNTEAIVLNYVNEQNRPLNSQNVADALQKYNLKKAGIQKALDSLADNGKISFKEYGKQKIYIA 68 (226)
Q Consensus 6 ~ea~~~Il~y~~~~nrPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~K~~GK~kiY~~ 68 (226)
+.....||++|... -|.++.+|...+. .+++.++|.+.|..|.+.|+|... |.. +|..
T Consensus 12 d~~d~~IL~~L~~~-g~~s~~eLA~~l~-~giS~~aVs~rL~~Le~~GLV~~~--~rg-~Y~L 69 (111)
T 3b73_A 12 TIWDDRILEIIHEE-GNGSPKELEDRDE-IRISKSSVSRRLKKLADHDLLQPL--ANG-VYVI 69 (111)
T ss_dssp CHHHHHHHHHHHHH-SCBCHHHHHTSTT-CCSCHHHHHHHHHHHHHTTSEEEC--STT-CEEE
T ss_pred CHHHHHHHHHHHHc-CCCCHHHHHHHHh-cCCCHHHHHHHHHHHHHCCCEEec--CCc-eEEE
Confidence 56778999999764 4999988887652 278999999999999999999885 444 7766
No 108
>3mq0_A Transcriptional repressor of the blcabc operon; helix-turn-helix, GAF fold, transcription repressor; 1.79A {Agrobacterium tumefaciens}
Probab=93.15 E-value=0.11 Score=43.93 Aligned_cols=56 Identities=16% Similarity=0.215 Sum_probs=46.0
Q ss_pred hHHHHHHHHHHhcCCCCcHHHHHHHHhcccccHHHHHHHHHHHHHcCCcceeecCceeEEEe
Q 027236 7 NTEAIVLNYVNEQNRPLNSQNVADALQKYNLKKAGIQKALDSLADNGKISFKEYGKQKIYIA 68 (226)
Q Consensus 7 ea~~~Il~y~~~~nrPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~K~~GK~kiY~~ 68 (226)
+.--.||++|-...+|.++.+|...+ |++|++|-..|.+|++.|.|....-| -|..
T Consensus 30 ~Ral~IL~~l~~~~~~ltl~eia~~l---gl~ksTv~RlL~tL~~~G~v~~~~~~---~Y~L 85 (275)
T 3mq0_A 30 RRAVRILDLVAGSPRDLTAAELTRFL---DLPKSSAHGLLAVMTELDLLARSADG---TLRI 85 (275)
T ss_dssp HHHHHHHHHHHHCSSCEEHHHHHHHH---TCC--CHHHHHHHHHHTTSEEECTTS---EEEE
T ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHH---CcCHHHHHHHHHHHHHCCCEEECCCC---cEEe
Confidence 44456999999999999999999988 89999999999999999999876422 4666
No 109
>2xrn_A HTH-type transcriptional regulator TTGV; DNA-binding protein, tetramer gene regulator, cooperative DN binding, multidrug binding protein; 2.90A {Pseudomonas putida} PDB: 2xro_A
Probab=92.99 E-value=0.15 Score=42.06 Aligned_cols=55 Identities=11% Similarity=0.165 Sum_probs=46.0
Q ss_pred HHHHHHHHHhcCCCCcHHHHHHHHhcccccHHHHHHHHHHHHHcCCcceeecCceeEEEe
Q 027236 9 EAIVLNYVNEQNRPLNSQNVADALQKYNLKKAGIQKALDSLADNGKISFKEYGKQKIYIA 68 (226)
Q Consensus 9 ~~~Il~y~~~~nrPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~K~~GK~kiY~~ 68 (226)
--.||++|.....|.++.+|...+ |++|++|-..|..|++.|.|....- ..-|..
T Consensus 8 ~l~iL~~l~~~~~~~s~~ela~~~---gl~~stv~r~l~~L~~~G~v~~~~~--~~~Y~l 62 (241)
T 2xrn_A 8 AASIMRALGSHPHGLSLAAIAQLV---GLPRSTVQRIINALEEEFLVEALGP--AGGFRL 62 (241)
T ss_dssp HHHHHHHHHTCTTCEEHHHHHHHT---TSCHHHHHHHHHHHHTTTSEEECGG--GCEEEE
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHH---CcCHHHHHHHHHHHHHCCCEEEeCC--CCeEEE
Confidence 346899998888899999999888 8999999999999999999987533 334666
No 110
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=92.89 E-value=0.18 Score=40.16 Aligned_cols=46 Identities=17% Similarity=0.316 Sum_probs=38.6
Q ss_pred HHHHHHHHhcCCCCcHHHHHHHHhcccccHHHHHHHHHHHHHcCCccee
Q 027236 10 AIVLNYVNEQNRPLNSQNVADALQKYNLKKAGIQKALDSLADNGKISFK 58 (226)
Q Consensus 10 ~~Il~y~~~~nrPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~K 58 (226)
+.|++|+.+...|-|..+|...+ |+++++|...|..|..+|.|...
T Consensus 12 ~~I~~~~~~~g~~~s~~eia~~l---gl~~~tv~~~l~~Le~~G~i~~~ 57 (196)
T 3k2z_A 12 LFIEEFIEKNGYPPSVREIARRF---RITPRGALLHLIALEKKGYIERK 57 (196)
T ss_dssp HHHHHHHHHHSSCCCHHHHHHHH---TSCHHHHHHHHHHHHHTTSEECC
T ss_pred HHHHHHHHHhCCCCCHHHHHHHc---CCCcHHHHHHHHHHHHCCCEEec
Confidence 33444555678899999999988 79999999999999999999775
No 111
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=92.82 E-value=1.2 Score=33.03 Aligned_cols=51 Identities=18% Similarity=0.302 Sum_probs=37.2
Q ss_pred hHHHHHHHHHHhcC-CCCcHHHHHHHHhcccccHHHHHHHHHHHHHcCCcceeec
Q 027236 7 NTEAIVLNYVNEQN-RPLNSQNVADALQKYNLKKAGIQKALDSLADNGKISFKEY 60 (226)
Q Consensus 7 ea~~~Il~y~~~~n-rPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~K~~ 60 (226)
..+-.||.++.... .|.+..+|...+ ++++++|..+|+.|+++|+|....-
T Consensus 41 ~~q~~vL~~l~~~~~~~~t~~eLa~~l---~~~~~~vs~~l~~L~~~Glv~r~~~ 92 (148)
T 3jw4_A 41 SQQGRMIGYIYENQESGIIQKDLAQFF---GRRGASITSMLQGLEKKGYIERRIP 92 (148)
T ss_dssp HHHHHHHHHHHHHTTTCCCHHHHHHC---------CHHHHHHHHHHTTSBCCC--
T ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHH---CCChhHHHHHHHHHHHCCCEEeeCC
Confidence 45567888988754 799999998877 7999999999999999999987754
No 112
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=92.82 E-value=0.18 Score=32.13 Aligned_cols=37 Identities=22% Similarity=0.369 Sum_probs=31.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027236 75 IPNSEELNQMKEENAKLQEQLEEQRKAISKLEGEIRT 111 (226)
Q Consensus 75 ~~~~ee~~~l~~~i~~l~~~l~~l~~~~k~l~~el~~ 111 (226)
.++..+...|..++.+|+.++..|..++.++.++|.+
T Consensus 15 ~p~~~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~~ 51 (53)
T 2yy0_A 15 TPENPEIELLRLELAEMKEKYEAIVEENKKLKAKLAQ 51 (53)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5678999999999999999999999999988887753
No 113
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=92.80 E-value=0.42 Score=36.31 Aligned_cols=58 Identities=14% Similarity=0.130 Sum_probs=46.5
Q ss_pred chHHHHHHHHHHhcCCCCcHHHHHHHHhcccccHHHHHHHHHHHHHcCCcceeecC--ceeEEEe
Q 027236 6 DNTEAIVLNYVNEQNRPLNSQNVADALQKYNLKKAGIQKALDSLADNGKISFKEYG--KQKIYIA 68 (226)
Q Consensus 6 ~ea~~~Il~y~~~~nrPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~K~~G--K~kiY~~ 68 (226)
+.-.-.||.++. +.|-+..+|...+ +|+++++...|+.|++.|+|....+. ....|..
T Consensus 23 ~~w~l~IL~~L~--~g~~~~~eLa~~l---gis~~tls~~L~~Le~~GlI~r~~~~~d~~~~y~L 82 (146)
T 2f2e_A 23 DGWSMLIVRDAF--EGLTRFGEFQKSL---GLAKNILAARLRNLVEHGVMVAVPAESGSHQEYRL 82 (146)
T ss_dssp SSSHHHHHHHHH--TTCCSHHHHHHHH---CCCHHHHHHHHHHHHHTTSEEEEECSSSSCEEEEE
T ss_pred CchHHHHHHHHH--hCCCCHHHHHHHh---CCCHHHHHHHHHHHHHCCCEEEEecCCCCeEEEEE
Confidence 334556888885 5688988998888 79999999999999999999998873 2455555
No 114
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=92.78 E-value=0.24 Score=37.07 Aligned_cols=50 Identities=16% Similarity=0.204 Sum_probs=42.6
Q ss_pred hHHHHHHHHHHhcCCCCcHHHHHHHHhcccccHHHHHHHHHHHHHcCCcceeec
Q 027236 7 NTEAIVLNYVNEQNRPLNSQNVADALQKYNLKKAGIQKALDSLADNGKISFKEY 60 (226)
Q Consensus 7 ea~~~Il~y~~~~nrPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~K~~ 60 (226)
..+-.||.++.. +.|.+..+|...+ ++++++|..+|+.|++.|+|.....
T Consensus 47 ~~~~~iL~~l~~-~~~~t~~ela~~l---~~s~~tvs~~l~~Le~~glv~r~~~ 96 (153)
T 2pex_A 47 YPQYLVMLVLWE-TDERSVSEIGERL---YLDSATLTPLLKRLQAAGLVTRTRA 96 (153)
T ss_dssp HHHHHHHHHHHH-SCSEEHHHHHHHH---TCCHHHHHHHHHHHHHTTSEEEEC-
T ss_pred HHHHHHHHHHHh-CCCcCHHHHHHHh---CCCcccHHHHHHHHHHCCCEeecCC
Confidence 456678888876 5689999999988 7999999999999999999988654
No 115
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=92.76 E-value=1.9 Score=32.04 Aligned_cols=34 Identities=15% Similarity=0.150 Sum_probs=29.2
Q ss_pred cHHHHHHHHhcccccHHHHHHHHHHHHHcCCcceeec
Q 027236 24 NSQNVADALQKYNLKKAGIQKALDSLADNGKISFKEY 60 (226)
Q Consensus 24 s~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~K~~ 60 (226)
|..++...+ ||+.+.|.+||..|..+|+|.....
T Consensus 40 ser~La~~~---gVSr~tVReAl~~L~~eGlv~~~~g 73 (134)
T 4ham_A 40 SIREFASRI---GVNPNTVSKAYQELERQEVIITVKG 73 (134)
T ss_dssp CHHHHHHHH---TCCHHHHHHHHHHHHHTTSEEEETT
T ss_pred cHHHHHHHH---CCCHHHHHHHHHHHHHCCcEEEEcC
Confidence 666777666 8999999999999999999987754
No 116
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=92.69 E-value=1.8 Score=31.76 Aligned_cols=49 Identities=16% Similarity=0.199 Sum_probs=41.7
Q ss_pred HHHHHHHHHHhcCCCCcHHHHHHHHhcccccHHHHHHHHHHHHHcCCcceeecC
Q 027236 8 TEAIVLNYVNEQNRPLNSQNVADALQKYNLKKAGIQKALDSLADNGKISFKEYG 61 (226)
Q Consensus 8 a~~~Il~y~~~~nrPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~K~~G 61 (226)
.+-.||.++.... | +..+|...+ ++++++|...|+.|++.|+|....-.
T Consensus 38 ~~~~iL~~l~~~~-~-~~~~la~~l---~~~~~tvs~~l~~Le~~Glv~r~~~~ 86 (144)
T 3f3x_A 38 LDFSILKATSEEP-R-SMVYLANRY---FVTQSAITAAVDKLEAKGLVRRIRDS 86 (144)
T ss_dssp HHHHHHHHHHHSC-E-EHHHHHHHH---TCCHHHHHHHHHHHHHTTSEEEEEET
T ss_pred HHHHHHHHHHHCC-C-CHHHHHHHH---CCChhHHHHHHHHHHHCCCEEeccCC
Confidence 4567888887654 4 999999888 79999999999999999999988654
No 117
>3cuq_B Vacuolar protein-sorting-associated protein 36; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_B
Probab=92.67 E-value=0.59 Score=38.32 Aligned_cols=60 Identities=15% Similarity=0.134 Sum_probs=50.5
Q ss_pred chHHHHHHHHHHhcCCCCcHHHHHHHHhcccccHHHHHHHHHHHHHcCCcceeecCceeEEEee
Q 027236 6 DNTEAIVLNYVNEQNRPLNSQNVADALQKYNLKKAGIQKALDSLADNGKISFKEYGKQKIYIAR 69 (226)
Q Consensus 6 ~ea~~~Il~y~~~~nrPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~K~~GK~kiY~~~ 69 (226)
+.-...|++++.. +.+-++.++..++ |++...++.+|+.++.+|++..+.-+-..+||+|
T Consensus 153 ~~~~~~il~~~~~-~g~vt~~~la~~l---~ws~~~a~e~L~~~e~~G~l~~D~~~eg~~y~pn 212 (218)
T 3cuq_B 153 EEMVASALETVSE-KGSLTSEEFAKLV---GMSVLLAKERLLLAEKMGHLCRDDSVEGLRFYPN 212 (218)
T ss_dssp GGGHHHHHHHHHH-TSCBCHHHHHHHH---TCCHHHHHHHHHHHHHTTSEEEEESSSCEEEEEC
T ss_pred HHHHHHHHHHHHH-CCCcCHHHHHHHh---CCCHHHHHHHHHHHHHcCCEEEECCCCceEEehh
Confidence 4677889998864 6788999998888 8999999999999999999999986656556663
No 118
>2o0y_A Transcriptional regulator; ICLR-family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP}
Probab=92.62 E-value=0.09 Score=43.98 Aligned_cols=55 Identities=9% Similarity=0.192 Sum_probs=46.0
Q ss_pred HHHHHHHHHHhcCCCCcHHHHHHHHhcccccHHHHHHHHHHHHHcCCcceeecCceeEEEe
Q 027236 8 TEAIVLNYVNEQNRPLNSQNVADALQKYNLKKAGIQKALDSLADNGKISFKEYGKQKIYIA 68 (226)
Q Consensus 8 a~~~Il~y~~~~nrPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~K~~GK~kiY~~ 68 (226)
.--.||++|...++|.++.+|...+ |++|++|-..|..|++.|.|....-| -|..
T Consensus 24 r~l~iL~~l~~~~~~~~~~eia~~~---gl~kstv~r~l~tL~~~G~v~~~~~~---~Y~l 78 (260)
T 2o0y_A 24 RVIDLLELFDAAHPTRSLKELVEGT---KLPKTTVVRLVATMCARSVLTSRADG---SYSL 78 (260)
T ss_dssp HHHHHHTTCBTTBSSBCHHHHHHHH---CCCHHHHHHHHHHHHHTTSEEECTTS---CEEE
T ss_pred HHHHHHHHHhhCCCCcCHHHHHHHH---CcCHHHHHHHHHHHHHCCCEEECCCC---eEEe
Confidence 3446788887778899999999988 89999999999999999999887544 4655
No 119
>2g7u_A Transcriptional regulator; ICLR family, structural genomics, PSI, protein structure initiative, midwest center for struc genomics; 2.30A {Rhodococcus SP}
Probab=92.60 E-value=0.14 Score=42.67 Aligned_cols=55 Identities=16% Similarity=0.168 Sum_probs=46.3
Q ss_pred hHHHHHHHHHHhcCCCCcHHHHHHHHhcccccHHHHHHHHHHHHHcCCcceeecCceeEEEe
Q 027236 7 NTEAIVLNYVNEQNRPLNSQNVADALQKYNLKKAGIQKALDSLADNGKISFKEYGKQKIYIA 68 (226)
Q Consensus 7 ea~~~Il~y~~~~nrPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~K~~GK~kiY~~ 68 (226)
+.--.||++|.....|.++.+|...+ |++|++|-..|..|++.|.|... + .-|..
T Consensus 14 ~r~l~iL~~l~~~~~~~~~~eia~~~---gl~~stv~r~l~~L~~~G~v~~~--~--~~Y~L 68 (257)
T 2g7u_A 14 ERGFAVLLAFDAQRPNPTLAELATEA---GLSRPAVRRILLTLQKLGYVAGS--G--GRWSL 68 (257)
T ss_dssp HHHHHHHHTCSSSCSSCBHHHHHHHH---TCCHHHHHHHHHHHHHTTSEEEE--T--TEEEE
T ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHH---CcCHHHHHHHHHHHHHCCCEEeC--C--CEEEE
Confidence 34456888888778899999999988 89999999999999999999875 3 45665
No 120
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=92.60 E-value=0.59 Score=29.74 Aligned_cols=55 Identities=11% Similarity=0.163 Sum_probs=37.6
Q ss_pred HHHHHHHHHhcCCCCcHHHHHHHHhcc--cccHHHHHHHHHHHHHcCCcceeecCceeEE
Q 027236 9 EAIVLNYVNEQNRPLNSQNVADALQKY--NLKKAGIQKALDSLADNGKISFKEYGKQKIY 66 (226)
Q Consensus 9 ~~~Il~y~~~~nrPys~~di~~~l~~~--~v~K~~v~k~L~~Lv~~g~i~~K~~GK~kiY 66 (226)
+..++..+..++.|+|+.+|.+.|... +|+.++|-..|+. -|+|....-|....|
T Consensus 6 R~~~i~~ll~~~~~~t~~el~~~l~~~~~~vs~~Tv~R~L~~---lg~v~~~~~~~~~~Y 62 (64)
T 2p5k_A 6 RHIKIREIITSNEIETQDELVDMLKQDGYKVTQATVSRDIKE---LHLVKVPTNNGSYKY 62 (64)
T ss_dssp HHHHHHHHHHHSCCCSHHHHHHHHHHTTCCCCHHHHHHHHHH---HTCEEEEETTTEEEE
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHhCCCcCHHHHHHHHHH---cCCEEEecCCCceee
Confidence 344444455678999999999999653 7999999999994 477722222344444
No 121
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=92.59 E-value=2.5 Score=31.75 Aligned_cols=50 Identities=20% Similarity=0.191 Sum_probs=43.0
Q ss_pred hHHHHHHHHHHhcCCCCcHHHHHHHHhcccccHHHHHHHHHHHHHcCCcceeec
Q 027236 7 NTEAIVLNYVNEQNRPLNSQNVADALQKYNLKKAGIQKALDSLADNGKISFKEY 60 (226)
Q Consensus 7 ea~~~Il~y~~~~nrPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~K~~ 60 (226)
..+-.||.++... .|-+..+|...+ ++++++|..+|+.|++.|+|....-
T Consensus 46 ~~q~~iL~~l~~~-~~~t~~eLa~~l---~~~~~tvs~~l~~Le~~Glv~r~~~ 95 (162)
T 3k0l_A 46 LPQFTALSVLAAK-PNLSNAKLAERS---FIKPQSANKILQDLLANGWIEKAPD 95 (162)
T ss_dssp HHHHHHHHHHHHC-TTCCHHHHHHHH---TSCGGGHHHHHHHHHHTTSEEEEEC
T ss_pred HHHHHHHHHHHHC-CCCCHHHHHHHH---CCCHHHHHHHHHHHHHCcCeEecCC
Confidence 3456788888765 599999999988 7999999999999999999998764
No 122
>2dk8_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, RNA_POL_RPC34 domain, RNA polymerase III C39 subunit, NPPSFA; NMR {Mus musculus} SCOP: a.4.5.85
Probab=92.47 E-value=0.46 Score=32.90 Aligned_cols=63 Identities=10% Similarity=0.220 Sum_probs=53.9
Q ss_pred chHHHHHHHHHHhcCCCCcHHHHHHHHhcccccHHHHHHHHHHHHHcCCcceeecCceeEEEeec
Q 027236 6 DNTEAIVLNYVNEQNRPLNSQNVADALQKYNLKKAGIQKALDSLADNGKISFKEYGKQKIYIARQ 70 (226)
Q Consensus 6 ~ea~~~Il~y~~~~nrPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~K~~GK~kiY~~~Q 70 (226)
.+.++.||++++..-..-+=.++...++ +|+......++..|...|+|..-.-|.+-||=...
T Consensus 13 ~~ie~~IL~l~~~~P~GItd~~L~~~~p--~~~~~~r~~aIN~LL~~gkiel~K~~~~liYr~k~ 75 (81)
T 2dk8_A 13 VEIENRIIELCHQFPHGITDQVIQNEMP--HIEAQQRAVAINRLLSMGQLDLLRSNTGLLYRIKD 75 (81)
T ss_dssp HHHHHHHHHHHHHCSSCEEHHHHHHHCT--TSCHHHHHHHHHHHHHHTSEEEEECSSSEEEEECC
T ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHCC--CCCHHHHHHHHHHHHHcCCeEEEecCCeEEEEecc
Confidence 4668999999998888888888888886 69999999999999999999988888667775533
No 123
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=92.36 E-value=0.25 Score=33.90 Aligned_cols=45 Identities=18% Similarity=0.200 Sum_probs=38.4
Q ss_pred HHHHHHHHhcCCCCcHHHHHHHHhcccccHHHHHHHHHHHHHcCCccee
Q 027236 10 AIVLNYVNEQNRPLNSQNVADALQKYNLKKAGIQKALDSLADNGKISFK 58 (226)
Q Consensus 10 ~~Il~y~~~~nrPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~K 58 (226)
..|++|+.+ +.+-++.+|...| +|+..+|-.-|+.|.+.|+|.--
T Consensus 5 ~~Il~~L~~-~g~vsv~eLa~~l---~VS~~TIRrdL~~Le~~G~l~R~ 49 (78)
T 1xn7_A 5 IQVRDLLAL-RGRMEAAQISQTL---NTPQPMINAMLQQLESMGKAVRI 49 (78)
T ss_dssp HHHHHHHHH-SCSBCHHHHHHHT---TCCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHH-cCCCcHHHHHHHH---CcCHHHHHHHHHHHHHCCCEEEe
Confidence 578999975 5578988998887 79999999999999999988543
No 124
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=92.34 E-value=0.26 Score=38.99 Aligned_cols=49 Identities=14% Similarity=0.274 Sum_probs=43.5
Q ss_pred chHHHHHHHHHHhcCCCCcHHHHHHHHhcccccHHHHHHHHHHHHHcCC-cce
Q 027236 6 DNTEAIVLNYVNEQNRPLNSQNVADALQKYNLKKAGIQKALDSLADNGK-ISF 57 (226)
Q Consensus 6 ~ea~~~Il~y~~~~nrPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~-i~~ 57 (226)
.+-...|+.+|.+.++|.|+.++...+ +|+..+|.+-|+.|.+.|. |..
T Consensus 20 ~~R~~~Il~~L~~~~~~~s~~eLa~~l---~vS~~Ti~rdi~~L~~~G~~I~~ 69 (187)
T 1j5y_A 20 QERLKSIVRILERSKEPVSGAQLAEEL---SVSRQVIVQDIAYLRSLGYNIVA 69 (187)
T ss_dssp HHHHHHHHHHHHHCSSCBCHHHHHHHH---TSCHHHHHHHHHHHHHHTCCCEE
T ss_pred HHHHHHHHHHHHHcCCCcCHHHHHHHH---CcCHHHHHHHHHHHHHCCCeEEE
Confidence 345678999999888999999999988 8999999999999999999 655
No 125
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=92.30 E-value=0.37 Score=36.97 Aligned_cols=48 Identities=21% Similarity=0.356 Sum_probs=42.0
Q ss_pred chHHHHHHHHHHhcCCCCcHHHHHHHHhcccccHHHHHHHHHHHHHcCCcce
Q 027236 6 DNTEAIVLNYVNEQNRPLNSQNVADALQKYNLKKAGIQKALDSLADNGKISF 57 (226)
Q Consensus 6 ~ea~~~Il~y~~~~nrPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~ 57 (226)
++....|+.++... -|.+..+|...+ |++.++|.+.|..|.+.|.|..
T Consensus 9 d~~~~~il~~L~~~-~~~s~~ela~~l---g~s~~tv~~~l~~L~~~G~i~~ 56 (162)
T 2p5v_A 9 DKTDIKILQVLQEN-GRLTNVELSERV---ALSPSPCLRRLKQLEDAGIVRQ 56 (162)
T ss_dssp CHHHHHHHHHHHHC-TTCCHHHHHHHH---TSCHHHHHHHHHHHHHTTSEEE
T ss_pred CHHHHHHHHHHHHc-CCCCHHHHHHHH---CcCHHHHHHHHHHHHHCCCEee
Confidence 67778999998764 457999999988 7999999999999999999974
No 126
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=92.12 E-value=0.38 Score=35.16 Aligned_cols=50 Identities=14% Similarity=0.156 Sum_probs=42.6
Q ss_pred hHHHHHHHHHHhcCCCCcHHHHHHHHhcccccHHHHHHHHHHHHHcCCcceeec
Q 027236 7 NTEAIVLNYVNEQNRPLNSQNVADALQKYNLKKAGIQKALDSLADNGKISFKEY 60 (226)
Q Consensus 7 ea~~~Il~y~~~~nrPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~K~~ 60 (226)
..+-.||.++.. +.|-+..+|...+ ++++++|..+|+.|++.|+|.....
T Consensus 34 ~~~~~iL~~l~~-~~~~~~~~la~~l---~~~~~tvs~~l~~L~~~gli~r~~~ 83 (138)
T 1jgs_A 34 AAQFKVLCSIRC-AACITPVELKKVL---SVDLGALTRMLDRLVCKGWVERLPN 83 (138)
T ss_dssp HHHHHHHHHHHH-HSSBCHHHHHHHH---TCCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred HHHHHHHHHHHh-cCCCCHHHHHHHH---CCChHHHHHHHHHHHHCCCEEecCC
Confidence 456678888875 4588999998877 7999999999999999999998755
No 127
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=92.11 E-value=2.5 Score=30.60 Aligned_cols=50 Identities=12% Similarity=0.190 Sum_probs=42.4
Q ss_pred hHHHHHHHHHHhcCCCCcHHHHHHHHhcccccHHHHHHHHHHHHHcCCcceeec
Q 027236 7 NTEAIVLNYVNEQNRPLNSQNVADALQKYNLKKAGIQKALDSLADNGKISFKEY 60 (226)
Q Consensus 7 ea~~~Il~y~~~~nrPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~K~~ 60 (226)
..+-.||.++.. +.|-+..+|...+ ++++++|..+|+.|++.|+|.....
T Consensus 36 ~~~~~iL~~l~~-~~~~t~~ela~~l---~~s~~~vs~~l~~Le~~glv~r~~~ 85 (142)
T 2fbi_A 36 EQQWRVIRILRQ-QGEMESYQLANQA---CILRPSMTGVLARLERDGIVRRWKA 85 (142)
T ss_dssp HHHHHHHHHHHH-HCSEEHHHHHHHT---TCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred HHHHHHHHHHHH-cCCCCHHHHHHHH---CCCHhHHHHHHHHHHHCCCEEeecC
Confidence 356678888876 4589999998877 7999999999999999999988755
No 128
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=92.04 E-value=0.23 Score=34.87 Aligned_cols=46 Identities=13% Similarity=0.175 Sum_probs=39.6
Q ss_pred HHHHHHHHhcCCCCcHHHHHHHHhcccccHHHHHHHHHHHHHcCCcceee
Q 027236 10 AIVLNYVNEQNRPLNSQNVADALQKYNLKKAGIQKALDSLADNGKISFKE 59 (226)
Q Consensus 10 ~~Il~y~~~~nrPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~K~ 59 (226)
..|++|+.+ +.+-++.+|...| +|+..+|-.-|+.|.+.|+|.--.
T Consensus 5 ~~Il~~L~~-~g~vsv~eLA~~l---~VS~~TIRrDL~~Le~~G~l~R~~ 50 (87)
T 2k02_A 5 MEVRDMLAL-QGRMEAKQLSARL---QTPQPLIDAMLERMEAMGKVVRIS 50 (87)
T ss_dssp HHHHHHHHH-SCSEEHHHHHHHT---TCCHHHHHHHHHHHHTTCCSEEEE
T ss_pred HHHHHHHHH-cCCCcHHHHHHHH---CcCHHHHHHHHHHHHHCCCEEEEe
Confidence 468999975 5678989998887 899999999999999999987653
No 129
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=92.00 E-value=3.3 Score=31.91 Aligned_cols=71 Identities=20% Similarity=0.272 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHH
Q 027236 85 KEENAKLQEQLEEQRKAISKLEGEIRTLQSNLTLEQIREKEAQLVKEVKEMENKLAKLRGGVTLVKPEDRMAVEEMFLEK 164 (226)
Q Consensus 85 ~~~i~~l~~~l~~l~~~~k~l~~el~~l~~~~t~~el~~~i~~L~~e~~~l~~kL~~l~~~~~~vs~ee~~~~~~~~~~~ 164 (226)
...|..|+.++..++..++.+..++..-.+. .+.+.+++..|.-+...++.++ .+++++....
T Consensus 67 ~~~I~~L~~El~~l~~ki~dLeeel~eK~K~--~e~l~DEl~aLqlq~n~lE~kl---------------~kLq~EN~~L 129 (152)
T 3a7p_A 67 LNTLAILQKELKSKEQEIRRLKEVIALKNKN--TERLNAALISGTIENNVLQQKL---------------SDLKKEHSQL 129 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHH
Confidence 4577778888888888888887776654432 2334445555555544444444 4566777777
Q ss_pred HHHHHHHH
Q 027236 165 LSQWRKRK 172 (226)
Q Consensus 165 ~~~w~kRk 172 (226)
..+|-+|+
T Consensus 130 V~RWM~rk 137 (152)
T 3a7p_A 130 VARWLKKT 137 (152)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88898886
No 130
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=91.98 E-value=0.96 Score=33.27 Aligned_cols=50 Identities=18% Similarity=0.222 Sum_probs=42.4
Q ss_pred hHHHHHHHHHHhcCCCCcHHHHHHHHhcccccHHHHHHHHHHHHHcCCcceeec
Q 027236 7 NTEAIVLNYVNEQNRPLNSQNVADALQKYNLKKAGIQKALDSLADNGKISFKEY 60 (226)
Q Consensus 7 ea~~~Il~y~~~~nrPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~K~~ 60 (226)
..+-.||.++.. +.|-+..+|...+ ++++++|..+++.|++.|+|....-
T Consensus 36 ~~q~~vL~~l~~-~~~~t~~eLa~~l---~~~~~tvs~~l~~L~~~Glv~r~~~ 85 (140)
T 3hsr_A 36 YTGYIVLMAIEN-DEKLNIKKLGERV---FLDSGTLTPLLKKLEKKDYVVRTRE 85 (140)
T ss_dssp HHHHHHHHHSCT-TCEEEHHHHHHHH---TCCHHHHHHHHHHHHHTTSEEEEC-
T ss_pred HHHHHHHHHHHH-cCCcCHHHHHHHH---CCChhhHHHHHHHHHHCCCeEecCC
Confidence 455678888875 6799999999988 7999999999999999999998754
No 131
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=91.96 E-value=0.29 Score=40.76 Aligned_cols=57 Identities=19% Similarity=0.250 Sum_probs=47.6
Q ss_pred chHHHHHHHHHHhcCCCCcHHHHHHHHhcccccHHHHHHHHHHHHHcCCcceeecCceeEEEe
Q 027236 6 DNTEAIVLNYVNEQNRPLNSQNVADALQKYNLKKAGIQKALDSLADNGKISFKEYGKQKIYIA 68 (226)
Q Consensus 6 ~ea~~~Il~y~~~~nrPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~K~~GK~kiY~~ 68 (226)
....-.||.++.. +.|-++.+|...+ ++++++|.+.|+.|.+.|+|... |....|..
T Consensus 151 ~~~~~~IL~~L~~-~~~~s~~eLA~~l---glsksTv~r~L~~Le~~GlV~r~--~r~~~~~L 207 (244)
T 2wte_A 151 SREEMKLLNVLYE-TKGTGITELAKML---DKSEKTLINKIAELKKFGILTQK--GKDRKVEL 207 (244)
T ss_dssp CHHHHHHHHHHHH-HTCBCHHHHHHHH---TCCHHHHHHHHHHHHHTTSEEEE--TTTTEEEE
T ss_pred CHHHHHHHHHHHH-cCCCCHHHHHHHH---CcCHHHHHHHHHHHHHCCCEEEe--CCccEEEE
Confidence 4456788998874 5689999999988 79999999999999999999886 66666666
No 132
>3l7w_A Putative uncharacterized protein SMU.1704; PADR, transcriptional factor, transcription; HET: MSE; 2.20A {Streptococcus mutans} SCOP: a.4.5.0
Probab=91.94 E-value=1.3 Score=31.77 Aligned_cols=60 Identities=18% Similarity=0.295 Sum_probs=45.8
Q ss_pred hHHHHHHHHHHhcCCCCcHHHHHHHHhc-ccccHHHHHHHHHHHHHcCCcceeec---Cce-eEEEe
Q 027236 7 NTEAIVLNYVNEQNRPLNSQNVADALQK-YNLKKAGIQKALDSLADNGKISFKEY---GKQ-KIYIA 68 (226)
Q Consensus 7 ea~~~Il~y~~~~nrPys~~di~~~l~~-~~v~K~~v~k~L~~Lv~~g~i~~K~~---GK~-kiY~~ 68 (226)
--+-.||.++.. .|..--+|...+.. .+++.++|-.+|..|.++|+|..... |.. ++|..
T Consensus 9 ~l~~~IL~~L~~--~~~~gyel~~~l~~~~~i~~~tly~~L~~Le~~GlI~~~~~~~~~r~r~~y~L 73 (108)
T 3l7w_A 9 LIEYLILAIVSK--HDSYGYDISQTIKLIASIKESTLYPILKKLEKAGYLSTYTQEHQGRRRKYYHL 73 (108)
T ss_dssp HHHHHHHHHHHH--SCEEHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTSEEEEEEEETTEEEEEEEE
T ss_pred HHHHHHHHHHHc--CCCcHHHHHHHHHHHhCCCcChHHHHHHHHHHCCCeEEEeecCCCCcceEEEE
Confidence 345678888875 57776677777754 47999999999999999999998753 554 55555
No 133
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=91.84 E-value=1.2 Score=33.92 Aligned_cols=61 Identities=5% Similarity=0.186 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 027236 79 EELNQMKEENAKLQEQLEEQRKAISKLEGEIRTLQSNLTLEQIREKEAQLVKEVKEMENKLAK 141 (226)
Q Consensus 79 ee~~~l~~~i~~l~~~l~~l~~~~k~l~~el~~l~~~~t~~el~~~i~~L~~e~~~l~~kL~~ 141 (226)
.+...+..++.++..++..|+.++..++.++..+... .+++..++..|+.++..|+..|..
T Consensus 75 ~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e--~~~l~~~~~~l~~~~~~le~~~~~ 135 (138)
T 3hnw_A 75 KMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKE--IKELKSEINKYQKNIVKLETELND 135 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5566777888888888888888888888777777754 467788888888888888887754
No 134
>2qc0_A Uncharacterized protein; NP_719793.1, uncharacterized protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Shewanella oneidensis} PDB: 3eqx_A*
Probab=91.77 E-value=0.23 Score=43.91 Aligned_cols=54 Identities=22% Similarity=0.327 Sum_probs=39.6
Q ss_pred HHHHHHHHhcCCCC-cHHHHHHHHhcccccHHHHHHHHHHHHHcCCcceeecCceeEEEe
Q 027236 10 AIVLNYVNEQNRPL-NSQNVADALQKYNLKKAGIQKALDSLADNGKISFKEYGKQKIYIA 68 (226)
Q Consensus 10 ~~Il~y~~~~nrPy-s~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~K~~GK~kiY~~ 68 (226)
..|++++.. .|| ++.++...+ ||+.+++.+.|..|++.|.|.....|+..+|.+
T Consensus 300 ~~ll~~l~~--~p~~t~~~~~~~~---gvS~~Ta~r~L~~L~e~GiL~~~~~gR~~~y~~ 354 (373)
T 2qc0_A 300 HELVQVIFE--QPYCRIQNLVESG---LAKRQTASVYLKQLCDIGVLEEVQSGKEKLFVH 354 (373)
T ss_dssp HHHHHHHHH--CSEEEHHHHHHTS---SSCHHHHHHHHHHHHHTTSCEEC--CCSCEEEC
T ss_pred HHHHHHHHh--CCcccHHHHHHHh---CCCHHHHHHHHHHHHHCCcEEEecCCCceEEeh
Confidence 456666664 366 454444433 899999999999999999999988898876665
No 135
>3r4k_A Transcriptional regulator, ICLR family; DNA/RNA-binding 3-helical bundle, profilin-like, structural joint center for structural genomics, JCSG; 2.46A {Ruegeria SP}
Probab=91.62 E-value=0.082 Score=44.28 Aligned_cols=55 Identities=16% Similarity=0.282 Sum_probs=46.2
Q ss_pred HHHHHHHHHhcCCCCcHHHHHHHHhcccccHHHHHHHHHHHHHcCCcceeecCceeEEEe
Q 027236 9 EAIVLNYVNEQNRPLNSQNVADALQKYNLKKAGIQKALDSLADNGKISFKEYGKQKIYIA 68 (226)
Q Consensus 9 ~~~Il~y~~~~nrPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~K~~GK~kiY~~ 68 (226)
--.||++|...+.|.++.+|...+ |++|++|-..|..|++.|.|.... .+.-|..
T Consensus 8 al~IL~~l~~~~~~lsl~eia~~l---gl~ksT~~RlL~tL~~~G~v~~~~--~~~~Y~l 62 (260)
T 3r4k_A 8 ALTLLTYFNHGRLEIGLSDLTRLS---GMNKATVYRLMSELQEAGFVEQVE--GARSYRL 62 (260)
T ss_dssp HHHHHTTCBTTBSEEEHHHHHHHH---CSCHHHHHHHHHHHHHTTSEEECS--SSSEEEE
T ss_pred HHHHHHHHhhCCCCCCHHHHHHHH---CcCHHHHHHHHHHHHHCCCEEEcC--CCCcEEc
Confidence 346889998888999999999988 899999999999999999998643 3234666
No 136
>2hgc_A YJCQ protein; SR346, structure, autostructure, NESG, PSI-2, northeast structural genomics consortium, protein structure initiative; NMR {Bacillus subtilis} SCOP: a.4.5.77
Probab=91.60 E-value=0.54 Score=34.00 Aligned_cols=65 Identities=17% Similarity=0.186 Sum_probs=46.1
Q ss_pred HHHHHHHhcCCCCcHHHHHHHHhcccccHHHHHHHHHHHHHcCCcceeecCceeEEEeecCCCCCCCHHHHHHH
Q 027236 11 IVLNYVNEQNRPLNSQNVADALQKYNLKKAGIQKALDSLADNGKISFKEYGKQKIYIARQDQFDIPNSEELNQM 84 (226)
Q Consensus 11 ~Il~y~~~~nrPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~K~~GK~kiY~~~Q~~~~~~~~ee~~~l 84 (226)
+||.|+...+.|+|. .+| ||+....-.+|+.|+++|+|.+-.|.... +... ...+..|.+-++-+
T Consensus 9 kIL~~L~~~~~~is~----e~l---~Ise~~~~~il~~L~d~GyI~Gv~~~~~~-~~i~-~~~~~IT~~GleYL 73 (102)
T 2hgc_A 9 AILKEIFEGNTPLSE----NDI---GVTEDQFDDAVNFLKREGYIIGVHYSDDR-PHLY-KLGPELTEKGENYL 73 (102)
T ss_dssp HHHHHHHHHCSCCCH----HHH---TSCHHHHHHHHHHHHHHTSEECCEESSSS-EECC-SSCCEECHHHHHHH
T ss_pred HHHHHHHhCCCcCCH----Hhc---CCCHHHHHHHHHHHHHCCCccceEEEeCc-ceee-ccCceECHHHHHHH
Confidence 689999998878773 334 89999999999999999999999875441 2211 00144566665543
No 137
>3rkx_A Biotin-[acetyl-COA-carboxylase] ligase; biotin protein ligase, 3 domains, enzyme DNA binding, biotin coupling domains; 2.10A {Staphylococcus aureus} PDB: 3rir_A* 3rkw_A 3rky_A* 3v7c_A* 3v7s_A* 3v8j_A 3v7r_A 3v8k_A* 3v8l_A* 4dq2_A*
Probab=91.45 E-value=1.2 Score=38.56 Aligned_cols=68 Identities=21% Similarity=0.177 Sum_probs=52.8
Q ss_pred HHHHHHHHHHhc-CCCCcHHHHHHHHhcccccHHHHHHHHHHHHHcCCcceeecCceeEEEeecCCCCCCCHHHH
Q 027236 8 TEAIVLNYVNEQ-NRPLNSQNVADALQKYNLKKAGIQKALDSLADNGKISFKEYGKQKIYIARQDQFDIPNSEEL 81 (226)
Q Consensus 8 a~~~Il~y~~~~-nrPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~K~~GK~kiY~~~Q~~~~~~~~ee~ 81 (226)
-+..||++|.++ +.|.|..+|.+.| +|+.++|-|.++.|-+.|.++.-.-|+ -|..... .+.++++++
T Consensus 4 ~~~~iL~~L~~~~g~~~Sg~eLa~~l---gvSr~aV~k~i~~L~~~G~~i~~~~~~--GY~L~~~-~~~l~~~~i 72 (323)
T 3rkx_A 4 YSQDVLQLLYKNKPNYISGQSIAESL---NISRTAVKKVIDQLKLEGCKIDSVNHK--GHLLQQL-PDIWYQGII 72 (323)
T ss_dssp HHHHHHHHHHHHTTSCBCHHHHHHHH---TSCHHHHHHHHHHHHHTTCEEEEETTT--EEEEEEC-CSSCCHHHH
T ss_pred HHHHHHHHHHhCCCCccCHHHHHHHH---CCCHHHHHHHHHHHHhcCCeEEEeCCC--eEEEecC-cccCCHHHH
Confidence 467899999864 5799999999988 899999999999999999988776675 4544332 233456655
No 138
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=91.34 E-value=0.31 Score=36.51 Aligned_cols=50 Identities=14% Similarity=0.177 Sum_probs=41.3
Q ss_pred hHHHHHHHHHHhcCCCCcHHHHHHHHhcccccHHHHHHHHHHHHHcCCcceeec
Q 027236 7 NTEAIVLNYVNEQNRPLNSQNVADALQKYNLKKAGIQKALDSLADNGKISFKEY 60 (226)
Q Consensus 7 ea~~~Il~y~~~~nrPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~K~~ 60 (226)
..+-.||.++.. +.|-+..+|...+ ++++++|..+|+.|++.|+|.....
T Consensus 43 ~~~~~iL~~l~~-~~~~t~~ela~~l---~i~~~tvs~~l~~Le~~Glv~r~~~ 92 (155)
T 3cdh_A 43 VPEWRVLACLVD-NDAMMITRLAKLS---LMEQSRMTRIVDQMDARGLVTRVAD 92 (155)
T ss_dssp HHHHHHHHHHSS-CSCBCHHHHHHHT---TCCHHHHHHHHHHHHHTTSEEECC-
T ss_pred HHHHHHHHHHHH-CCCcCHHHHHHHH---CCCHHHHHHHHHHHHHCCCEEeccC
Confidence 345678888864 5689999998877 7999999999999999999987543
No 139
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=91.31 E-value=0.91 Score=34.27 Aligned_cols=59 Identities=14% Similarity=0.262 Sum_probs=47.7
Q ss_pred CCCCcchHHHHHHHHHHhcCCCCcHHHHHHHHhcccccHHHHHHHHHHHHHcCCcce-------eecCce
Q 027236 1 MAPKSDNTEAIVLNYVNEQNRPLNSQNVADALQKYNLKKAGIQKALDSLADNGKISF-------KEYGKQ 63 (226)
Q Consensus 1 M~~kg~ea~~~Il~y~~~~nrPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~-------K~~GK~ 63 (226)
|+..=++....|+.++... -+-+..+|...+ |++.++|.+.|..|.+.|.|.. ...|..
T Consensus 1 m~~~ld~~~~~il~~L~~~-~~~s~~ela~~l---g~s~~tv~~~l~~L~~~G~i~~~~~~~d~~~~G~~ 66 (151)
T 2cyy_A 1 MRVPLDEIDKKIIKILQND-GKAPLREISKIT---GLAESTIHERIRKLRESGVIKKFTAIIDPEALGYS 66 (151)
T ss_dssp CCCCCCHHHHHHHHHHHHC-TTCCHHHHHHHH---CSCHHHHHHHHHHHHHHTSSCCCCCCCCGGGGTCC
T ss_pred CCCCcCHHHHHHHHHHHHc-CCCCHHHHHHHH---CcCHHHHHHHHHHHHHCCCeEEEEEEECHHHCCcc
Confidence 4444467777899988764 568988999888 7999999999999999999975 556764
No 140
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=91.29 E-value=0.16 Score=36.51 Aligned_cols=42 Identities=26% Similarity=0.433 Sum_probs=34.7
Q ss_pred cHHHHHHHHhcccccHHHHHHHHHHHHHcCCcceeecCceeEEEe
Q 027236 24 NSQNVADALQKYNLKKAGIQKALDSLADNGKISFKEYGKQKIYIA 68 (226)
Q Consensus 24 s~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~K~~GK~kiY~~ 68 (226)
|..++...+ +|+.+.|.++|..|.++|+|....-|..-+|+.
T Consensus 45 s~~eLa~~l---gVSr~tVr~al~~L~~~GlI~~~~gG~~G~~V~ 86 (102)
T 2b0l_A 45 VASKIADRV---GITRSVIVNALRKLESAGVIESRSLGMKGTYIK 86 (102)
T ss_dssp CHHHHHHHH---TCCHHHHHHHHHHHHHTTSEEEEECSSSCEEEE
T ss_pred CHHHHHHHH---CcCHHHHHHHHHHHHHCCCEEEEeCCCCcEEEe
Confidence 888888877 899999999999999999998887553344554
No 141
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=90.95 E-value=3.4 Score=29.99 Aligned_cols=49 Identities=14% Similarity=0.160 Sum_probs=36.5
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHh---hCCCCCCCHHHHHHHHHHHH
Q 027236 114 SNLTLEQIREKEAQLVKEVKEMENKLAKL---RGGVTLVKPEDRMAVEEMFL 162 (226)
Q Consensus 114 ~~~t~~el~~~i~~L~~e~~~l~~kL~~l---~~~~~~vs~ee~~~~~~~~~ 162 (226)
..+|.+||.+++..|+-|++.|+.+|..- ..+..++||.+.+.+...+.
T Consensus 6 ~~~t~EeLaaeL~kLqmENK~LKkkl~~~g~~~p~d~~LTp~qKea~I~s~~ 57 (110)
T 2oa5_A 6 PDKTYEEMVKEVERLKLENKTLKQKVKSSGAVSSDDSILTAAKRESIIVSSS 57 (110)
T ss_dssp CCSSHHHHHHHHHHHHHHHHHHHHTC---------CCBCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccCCHHHHHHHHHHHH
Confidence 46899999999999999999999998641 12346789998887665543
No 142
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=90.84 E-value=1.4 Score=37.95 Aligned_cols=68 Identities=18% Similarity=0.309 Sum_probs=53.3
Q ss_pred hHHHHHHHHHHhcCCCCcHHHHHHHHhcccccHHHHHHHHHHHHHcCCcceeecCceeEEEeecCCCCCCCHHHH
Q 027236 7 NTEAIVLNYVNEQNRPLNSQNVADALQKYNLKKAGIQKALDSLADNGKISFKEYGKQKIYIARQDQFDIPNSEEL 81 (226)
Q Consensus 7 ea~~~Il~y~~~~nrPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~K~~GK~kiY~~~Q~~~~~~~~ee~ 81 (226)
+-...|++++. .+.+.|..++.+.+ +|+.++|.+-|+.|.+.|.+....-|+ -|..... ++.++++++
T Consensus 5 ~r~~~Il~~L~-~~~~~s~~eLa~~l---~vS~~ti~r~l~~L~~~G~~i~~~~g~--GY~l~~~-~~~L~~~eI 72 (321)
T 1bia_A 5 TVPLKLIALLA-NGEFHSGEQLGETL---GMSRAAINKHIQTLRDWGVDVFTVPGK--GYSLPEP-IQLLNAKQI 72 (321)
T ss_dssp HHHHHHHHHHT-TSSCBCHHHHHHHH---TSCHHHHHHHHHHHHHTTCCCEEETTT--EEECSSC-CCCCCHHHH
T ss_pred hHHHHHHHHHH-cCCCcCHHHHHHHH---CCCHHHHHHHHHHHHhCCCcEEEecCC--CcEEeec-cccCCHHHH
Confidence 45678999995 67899999999988 799999999999999999999887787 4555332 234455554
No 143
>2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, structure initiative, midwest center for structural genomic transcription; 2.10A {Rhodococcus SP}
Probab=90.84 E-value=0.19 Score=42.02 Aligned_cols=54 Identities=20% Similarity=0.301 Sum_probs=45.6
Q ss_pred HHHHHHHHHHhcCCCCcHHHHHHHHhcccccHHHHHHHHHHHHHcCCcceeecCceeEEEe
Q 027236 8 TEAIVLNYVNEQNRPLNSQNVADALQKYNLKKAGIQKALDSLADNGKISFKEYGKQKIYIA 68 (226)
Q Consensus 8 a~~~Il~y~~~~nrPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~K~~GK~kiY~~ 68 (226)
.--.||++|....+|.++.+|...+ |++|++|-..|..|++.|.|... + .-|..
T Consensus 22 r~l~iL~~l~~~~~~~~~~eia~~~---gl~~stv~r~l~tL~~~G~v~~~--~--~~Y~L 75 (265)
T 2ia2_A 22 RGLAVIRCFDHRNQRRTLSDVARAT---DLTRATARRFLLTLVELGYVATD--G--SAFWL 75 (265)
T ss_dssp HHHHHHHTCCSSCSSEEHHHHHHHH---TCCHHHHHHHHHHHHHHTSEEES--S--SEEEE
T ss_pred HHHHHHHHHHhCCCCCCHHHHHHHH---CcCHHHHHHHHHHHHHCCCEEec--C--CEEEE
Confidence 3446888887778999999999988 89999999999999999999875 3 45665
No 144
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=90.82 E-value=2.3 Score=33.61 Aligned_cols=64 Identities=16% Similarity=0.144 Sum_probs=44.4
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHH
Q 027236 74 DIPNSEELNQMKEENAKLQEQLEEQRKAISKLEGEIRTLQSNLTLEQIREKEAQLVKEVKEMENKL 139 (226)
Q Consensus 74 ~~~~~ee~~~l~~~i~~l~~~l~~l~~~~k~l~~el~~l~~~~t~~el~~~i~~L~~e~~~l~~kL 139 (226)
-.+|++.-.+++.-..+.+.+...+.+++.....+|..|...++.+ .+.|.+|.+++.+++.+|
T Consensus 66 LnLT~EQq~ql~~I~~e~r~~~~~Lr~ql~akr~EL~aL~~a~~~D--eakI~aL~~Ei~~Lr~qL 129 (175)
T 3lay_A 66 SPLTTEQQATAQKIYDDYYTQTSALRQQLISKRYEYNALLTASSPD--TAKINAVAKEMESLGQKL 129 (175)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCC--HHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC--HHHHHHHHHHHHHHHHHH
Confidence 3467899999999999999999999999999999999987653321 123334444444444444
No 145
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=90.80 E-value=1.6 Score=32.63 Aligned_cols=61 Identities=16% Similarity=0.271 Sum_probs=33.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027236 77 NSEELNQMKEENAKLQEQLEEQRKAISKLEGEIRTLQSNLTLEQIREKEAQLVKEVKEMENKLAKL 142 (226)
Q Consensus 77 ~~ee~~~l~~~i~~l~~~l~~l~~~~k~l~~el~~l~~~~t~~el~~~i~~L~~e~~~l~~kL~~l 142 (226)
+..++..+...+..|+.++..++.....|+..|+.+.... ...+..++..+..++..|..+
T Consensus 34 ~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~-----~~~l~~~q~~i~~lE~eL~~~ 94 (129)
T 3tnu_B 34 TKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRG-----ELALKDARNKLAELEEALQKA 94 (129)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHhHHHH
Confidence 3456666666666676777766666666666666555432 223334444444444444443
No 146
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=90.75 E-value=3.1 Score=31.14 Aligned_cols=46 Identities=20% Similarity=0.299 Sum_probs=36.3
Q ss_pred HHHHHHHHhcCCCCcHHHHHHHHhcccccHHHHHHHHHHHHHcCCcceee
Q 027236 10 AIVLNYVNEQNRPLNSQNVADALQKYNLKKAGIQKALDSLADNGKISFKE 59 (226)
Q Consensus 10 ~~Il~y~~~~nrPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~K~ 59 (226)
..|+.++.. +.+.+..++...+ +|++++|.++|+.|.+.|+|....
T Consensus 43 ~~i~~~l~~-~~~~~~~~la~~l---~vs~~tvs~~l~~Le~~Glv~r~~ 88 (155)
T 2h09_A 43 ELISDLIRE-VGEARQVDMAARL---GVSQPTVAKMLKRLATMGLIEMIP 88 (155)
T ss_dssp HHHHHHHHH-HSCCCHHHHHHHH---TSCHHHHHHHHHHHHHTTCEEEET
T ss_pred HHHHHHHHh-CCCcCHHHHHHHh---CcCHHHHHHHHHHHHHCCCEEEec
Confidence 344445543 4678988888887 799999999999999999987654
No 147
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=90.63 E-value=0.57 Score=35.18 Aligned_cols=48 Identities=13% Similarity=0.284 Sum_probs=41.2
Q ss_pred chHHHHHHHHHHhcCCCCcHHHHHHHHhcccccHHHHHHHHHHHHHcCCcce
Q 027236 6 DNTEAIVLNYVNEQNRPLNSQNVADALQKYNLKKAGIQKALDSLADNGKISF 57 (226)
Q Consensus 6 ~ea~~~Il~y~~~~nrPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~ 57 (226)
++....|+.++.. |.+-+..+|...+ |++.++|.+.|+.|.+.|.|..
T Consensus 4 d~~d~~il~~L~~-~~~~s~~ela~~l---g~s~~tv~~~l~~L~~~G~i~~ 51 (144)
T 2cfx_A 4 DQIDLNIIEELKK-DSRLSMRELGRKI---KLSPPSVTERVRQLESFGIIKQ 51 (144)
T ss_dssp CHHHHHHHHHHHH-CSCCCHHHHHHHH---TCCHHHHHHHHHHHHHTTSEEE
T ss_pred CHHHHHHHHHHHH-cCCCCHHHHHHHH---CcCHHHHHHHHHHHHHCCCeEE
Confidence 4556689998875 5668989999988 7999999999999999999974
No 148
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=90.62 E-value=0.95 Score=34.98 Aligned_cols=51 Identities=14% Similarity=0.154 Sum_probs=43.9
Q ss_pred hHHHHHHHHHHhcCCC--CcHHHHHHHHhcccccHHHHHHHHHHHHHcCCcceeec
Q 027236 7 NTEAIVLNYVNEQNRP--LNSQNVADALQKYNLKKAGIQKALDSLADNGKISFKEY 60 (226)
Q Consensus 7 ea~~~Il~y~~~~nrP--ys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~K~~ 60 (226)
..+-.||.++.....| -+..+|...+ ++++++|...|+.|++.|+|....-
T Consensus 69 ~~~~~iL~~L~~~~~~~~~t~~eLa~~l---~is~~tvs~~l~~Le~~GlV~r~~~ 121 (181)
T 2fbk_A 69 AAGWDLLLTLYRSAPPEGLRPTELSALA---AISGPSTSNRIVRLLEKGLIERRED 121 (181)
T ss_dssp HHHHHHHHHHHHHCCSSCBCHHHHHHHC---SCCSGGGSSHHHHHHHHTSEECCC-
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHH---CCCHHHHHHHHHHHHHCcCEEecCC
Confidence 4567899999988776 8999998877 7999999999999999999987654
No 149
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=90.46 E-value=0.87 Score=34.21 Aligned_cols=48 Identities=19% Similarity=0.304 Sum_probs=41.1
Q ss_pred chHHHHHHHHHHhcCCCCcHHHHHHHHhcccccHHHHHHHHHHHHHcCCcce
Q 027236 6 DNTEAIVLNYVNEQNRPLNSQNVADALQKYNLKKAGIQKALDSLADNGKISF 57 (226)
Q Consensus 6 ~ea~~~Il~y~~~~nrPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~ 57 (226)
++....|+.++.. +-+.+..+|...+ |++.++|...|+.|.+.|.|..
T Consensus 2 d~~~~~il~~L~~-~~~~~~~ela~~l---g~s~~tv~~~l~~L~~~G~i~~ 49 (150)
T 2pn6_A 2 DEIDLRILKILQY-NAKYSLDEIAREI---RIPKATLSYRIKKLEKDGVIKG 49 (150)
T ss_dssp CHHHHHHHHHHTT-CTTSCHHHHHHHH---TSCHHHHHHHHHHHHHTTSSCC
T ss_pred ChHHHHHHHHHHH-cCCCCHHHHHHHH---CcCHHHHHHHHHHHHHCCcEEE
Confidence 3456789998864 5578999999988 8999999999999999999975
No 150
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=90.44 E-value=2.5 Score=31.51 Aligned_cols=51 Identities=12% Similarity=0.201 Sum_probs=42.2
Q ss_pred HHHHHHHHHHh-cCCCCcHHHHHHHHhcccccHHHHHHHHHHHHHcCCcceeecC
Q 027236 8 TEAIVLNYVNE-QNRPLNSQNVADALQKYNLKKAGIQKALDSLADNGKISFKEYG 61 (226)
Q Consensus 8 a~~~Il~y~~~-~nrPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~K~~G 61 (226)
.+-.||.++.. .+.|-+..+|...+ ++++++|..+++.|++.|+|....-.
T Consensus 36 ~q~~vL~~L~~~~~~~~t~~eLa~~l---~~~~~tvs~~v~~Le~~Glv~r~~~~ 87 (147)
T 4b8x_A 36 ARYEALVLLTFSKSGELPMSKIGERL---MVHPTSVTNTVDRLVRSGLVAKRPNP 87 (147)
T ss_dssp HHHHHHHHHHTSGGGEEEHHHHHHHH---TCCHHHHHHHHHHHHHTTSEEEEECC
T ss_pred HHHHHHHHHHHCCCCCcCHHHHHHHH---CCCHHHHHHHHHHHHhCCCEEEeecC
Confidence 34457777764 45688999999888 79999999999999999999988764
No 151
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=90.40 E-value=1.4 Score=40.35 Aligned_cols=65 Identities=23% Similarity=0.256 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027236 78 SEELNQMKEENAKLQEQLEEQRKAISKLEGEIRTLQSNL-TLEQIREKEAQLVKEVKEMENKLAKL 142 (226)
Q Consensus 78 ~ee~~~l~~~i~~l~~~l~~l~~~~k~l~~el~~l~~~~-t~~el~~~i~~L~~e~~~l~~kL~~l 142 (226)
-+++..++.+..+++.++..++.+...+..++..+.+.. ..++|.++..+|..++.++++++..+
T Consensus 32 ~~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~k~~~~~~~~l~~~~~~l~~~i~~le~~~~~~ 97 (485)
T 3qne_A 32 VDEIIAEYKEWVKLRFDLDEHNKKLNSVQKEIGKRFKAKEDAKDLIAEKEKLSNEKKEIIEKEAEA 97 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366788899999999999999999999999998877643 33556666555555555555544433
No 152
>1u5t_B Defective in vacuolar protein sorting; VPS36P; ESCRT, endosomal, trafficking, protein complex, transport protein; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54
Probab=90.39 E-value=0.37 Score=37.99 Aligned_cols=60 Identities=12% Similarity=0.133 Sum_probs=44.1
Q ss_pred chHHHHHHHHHHhcCCCC-----cHH-H-HHHHHhcccccHHHHHHHHHHHHHcCCcceeecCceeEEEee
Q 027236 6 DNTEAIVLNYVNEQNRPL-----NSQ-N-VADALQKYNLKKAGIQKALDSLADNGKISFKEYGKQKIYIAR 69 (226)
Q Consensus 6 ~ea~~~Il~y~~~~nrPy-----s~~-d-i~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~K~~GK~kiY~~~ 69 (226)
++-...|++++... .|| |+. + + ..+.+++...++.+|+.++.+|++..+.-.....||.|
T Consensus 98 d~~~~~il~~~~~~-~g~d~~~vt~~~~~l---a~~~~ws~~~a~e~L~~~e~~G~l~~D~~~~G~~y~~N 164 (169)
T 1u5t_B 98 DVVKEKLVDLIGDN-PGSDLLRLTQILSSN---NSKSNWTLGILMEVLQNCVDEGDLLIDKQLSGIYYYKN 164 (169)
T ss_dssp HHHHHHHHHHHHHS-CSBCHHHHHHHHHTS---CTTCCCCHHHHHHHHHHHHHHTSEEEEECSSCEEEEEC
T ss_pred hHHHHHHHHHHHhc-CCCCcccccHHHHHH---HHHhCCCHHHHHHHHHHHHHcCCEEEECCCCcceEEee
Confidence 44557889998744 466 433 3 3 33348999999999999999999999964333678886
No 153
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=90.37 E-value=0.64 Score=34.49 Aligned_cols=47 Identities=17% Similarity=0.367 Sum_probs=39.7
Q ss_pred hHHHHHHHHHHhcCCCCcHHHHHHHHhcccccHHHHHHHHHHHHHcCCcce
Q 027236 7 NTEAIVLNYVNEQNRPLNSQNVADALQKYNLKKAGIQKALDSLADNGKISF 57 (226)
Q Consensus 7 ea~~~Il~y~~~~nrPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~ 57 (226)
+....|+.++.. +.+.+..+|...+ |++.++|.+.|+.|.+.|.|..
T Consensus 4 ~~~~~il~~L~~-~~~~~~~ela~~l---g~s~~tv~~~l~~L~~~G~i~~ 50 (141)
T 1i1g_A 4 ERDKIILEILEK-DARTPFTEIAKKL---GISETAVRKRVKALEEKGIIEG 50 (141)
T ss_dssp SHHHHHHHHHHH-CTTCCHHHHHHHH---TSCHHHHHHHHHHHHHHTSSCC
T ss_pred HHHHHHHHHHHH-cCCCCHHHHHHHH---CcCHHHHHHHHHHHHHCCCEec
Confidence 456678998875 4567888999888 7999999999999999999964
No 154
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=90.25 E-value=0.48 Score=36.07 Aligned_cols=53 Identities=17% Similarity=0.183 Sum_probs=40.1
Q ss_pred HHHHHHHh-cCCCCcHHHHHHHHhcccccHHHHHHHHHHHHHcCCcceeecCceeEEEe
Q 027236 11 IVLNYVNE-QNRPLNSQNVADALQKYNLKKAGIQKALDSLADNGKISFKEYGKQKIYIA 68 (226)
Q Consensus 11 ~Il~y~~~-~nrPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~K~~GK~kiY~~ 68 (226)
.++-||-. .++|.++.+|...+ +|+...|.++|..|+..|+|.+.. | .--|..
T Consensus 18 ~~L~~La~~~~~~~~~~~iA~~~---~i~~~~l~kil~~L~~~Glv~s~r-G-~GGy~L 71 (149)
T 1ylf_A 18 HILSILKNNPSSLCTSDYMAESV---NTNPVVIRKIMSYLKQAGFVYVNR-G-PGGAGL 71 (149)
T ss_dssp HHHHHHHHSCGGGCCHHHHHHHH---TSCHHHHHHHHHHHHHTTSEEEC-----CCEEE
T ss_pred HHHHHHHhCCCCCcCHHHHHHHH---CcCHHHHHHHHHHHHHCCcEEEcc-C-CCceEe
Confidence 45556654 45799999998877 799999999999999999998765 4 334544
No 155
>4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A
Probab=90.24 E-value=0.92 Score=34.06 Aligned_cols=56 Identities=11% Similarity=0.144 Sum_probs=45.7
Q ss_pred HHHHHHHHHhcCCCCcHHHHHHHHhcccccHHHHHHHHHHHHHcCCcceeecCc---eeEEEe
Q 027236 9 EAIVLNYVNEQNRPLNSQNVADALQKYNLKKAGIQKALDSLADNGKISFKEYGK---QKIYIA 68 (226)
Q Consensus 9 ~~~Il~y~~~~nrPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~K~~GK---~kiY~~ 68 (226)
.-.||..+. +.|.+..++...++ +|+..++...|+.|.++|+|....+.. ...|..
T Consensus 28 ~l~IL~~L~--~g~~rf~eL~~~l~--gIs~~~Ls~~L~~Le~~GLV~R~~~~~d~r~v~y~L 86 (131)
T 4a5n_A 28 KGILFYHMI--DGKKRFNEFRRICP--SITQRMLTLQLRELEADGIVHREVYHQVPPKVEYSL 86 (131)
T ss_dssp HHHHHHHHT--TSCBCHHHHHHHCT--TSCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEE
T ss_pred HHHHHHHHh--cCCcCHHHHHHHhc--ccCHHHHHHHHHHHHHCCCEEEEecCCCCCeEEEEE
Confidence 456777776 67888889988885 799999999999999999999988853 455555
No 156
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=90.12 E-value=0.93 Score=30.59 Aligned_cols=26 Identities=19% Similarity=0.298 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhC
Q 027236 119 EQIREKEAQLVKEVKEMENKLAKLRG 144 (226)
Q Consensus 119 ~el~~~i~~L~~e~~~l~~kL~~l~~ 144 (226)
.++...|.+...+|..|+..|.+|++
T Consensus 43 ~eLEk~L~ekd~eI~~LqseLDKfrS 68 (72)
T 3nmd_A 43 DELELELDQKDELIQMLQNELDKYRS 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34556667777777777777777765
No 157
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=90.10 E-value=1.8 Score=39.21 Aligned_cols=64 Identities=20% Similarity=0.355 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027236 79 EELNQMKEENAKLQEQLEEQRKAISKLEGEIRTLQSN-LTLEQIREKEAQLVKEVKEMENKLAKL 142 (226)
Q Consensus 79 ee~~~l~~~i~~l~~~l~~l~~~~k~l~~el~~l~~~-~t~~el~~~i~~L~~e~~~l~~kL~~l 142 (226)
+++..++.+..+++.++..++.+.+.+..++..+++. ...++|.++..+|..+++++++++..+
T Consensus 31 ~~~~~l~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 95 (455)
T 2dq0_A 31 DEILKLDTEWRTKLKEINRLRHERNKIAVEIGKRRKKGEPVDELLAKSREIVKRIGELENEVEEL 95 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677889999999999999999999999999987665 444666666666666666666655544
No 158
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=89.79 E-value=1.6 Score=30.88 Aligned_cols=38 Identities=18% Similarity=0.265 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 027236 78 SEELNQMKEENAKLQEQLEEQRKAISKLEGEIRTLQSN 115 (226)
Q Consensus 78 ~ee~~~l~~~i~~l~~~l~~l~~~~k~l~~el~~l~~~ 115 (226)
.+++..+...++..-+.+..|+++.+.|+.++..+...
T Consensus 8 Ke~mq~LNdRlAsyIdKVR~LEqqN~~Le~~i~~l~~~ 45 (93)
T 3s4r_A 8 KVELQELNDRFANLIDKVRFLEQQNKILLAELEQLKGQ 45 (93)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 35688889999999999999999999999999888764
No 159
>3eyi_A Z-DNA-binding protein 1; alternative splicing, DNA-binding, polymorphism, DNA binding protein/Z-DNA complex, DNA binding protein/DNA complex; 1.45A {Homo sapiens} PDB: 2l4m_A
Probab=89.66 E-value=0.45 Score=31.89 Aligned_cols=59 Identities=20% Similarity=0.334 Sum_probs=47.1
Q ss_pred cchHHHHHHHHHHhcCCCCcHHHHHHHHhcccccHHHHHHHHHHHHHcCCcceeecCce-eEE
Q 027236 5 SDNTEAIVLNYVNEQNRPLNSQNVADALQKYNLKKAGIQKALDSLADNGKISFKEYGKQ-KIY 66 (226)
Q Consensus 5 g~ea~~~Il~y~~~~nrPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~K~~GK~-kiY 66 (226)
++..++.|+.||. .+-|-.|-.|+.+|.- -+...|.-.|=+|-.+|+|.+..-.+. .||
T Consensus 8 s~~~ee~I~~fL~-~~Gp~~AL~IAK~LGl--ktAK~VNp~LY~m~~~~lL~~Dek~~~W~iy 67 (72)
T 3eyi_A 8 SQQREEDIYRFLK-DNGPQRALVIAQALGM--RTAKDVNRDLYRMKSRHLLDMDEQSKAWTIY 67 (72)
T ss_dssp SSHHHHHHHHHHH-HHCSEEHHHHHHHTTC--CSGGGTHHHHHHHHHTTSEEECTTTCEEEEC
T ss_pred hhhhHHHHHHHHH-HcCCchHHHHHHHhCc--chhhhcCHHHHHHHHccCcCCCCCCCceeEE
Confidence 3566899999999 7889999999999942 234459999999999999987766666 565
No 160
>2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=89.30 E-value=0.16 Score=44.68 Aligned_cols=48 Identities=15% Similarity=0.283 Sum_probs=40.8
Q ss_pred chHHHHHHHHHHhcCCCCcHHHHHHHHhcccccHHHHHHHHHHHHHcCCccee
Q 027236 6 DNTEAIVLNYVNEQNRPLNSQNVADALQKYNLKKAGIQKALDSLADNGKISFK 58 (226)
Q Consensus 6 ~ea~~~Il~y~~~~nrPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~K 58 (226)
+.-+..||+++. +.|.|-.+|...+ ++++++|.+.++.|.++|+|..-
T Consensus 19 ~~~~~~il~~l~--~~~~sr~~la~~~---gls~~tv~~~v~~L~~~gli~~~ 66 (380)
T 2hoe_A 19 AENISRILKRIM--KSPVSRVELAEEL---GLTKTTVGEIAKIFLEKGIVVEE 66 (380)
T ss_dssp ---CCCSHHHHH--HSCBCHHHHHHHH---TCCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHHHH--cCCcCHHHHHHHH---CcCHHHHHHHHHHHHHCCCEEee
Confidence 444456999999 8999999999888 89999999999999999999774
No 161
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=89.30 E-value=0.81 Score=34.67 Aligned_cols=46 Identities=13% Similarity=0.213 Sum_probs=38.2
Q ss_pred HHHHHHHhc--CCCCcHHHHHHHHhcccccHHHHHHHHHHHHHcCCcceee
Q 027236 11 IVLNYVNEQ--NRPLNSQNVADALQKYNLKKAGIQKALDSLADNGKISFKE 59 (226)
Q Consensus 11 ~Il~y~~~~--nrPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~K~ 59 (226)
.+|-||-.. ++|.|+.+|...+ +|+...|.++|..|...|+|.+..
T Consensus 15 ~~L~~La~~~~~~~~s~~~IA~~~---~i~~~~l~kil~~L~~aGlv~s~r 62 (143)
T 3t8r_A 15 TLMISLAKKEGQGCISLKSIAEEN---NLSDLYLEQLVGPLRNAGLIRSVR 62 (143)
T ss_dssp HHHHHHHTTTTSCCEEHHHHHHHT---TCCHHHHHHHHHHHHHTTSEEECS
T ss_pred HHHHHHHhCCCCCCcCHHHHHHHH---CcCHHHHHHHHHHHHHCCEEEecC
Confidence 456666543 4699999998877 899999999999999999988764
No 162
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=89.09 E-value=0.96 Score=34.05 Aligned_cols=47 Identities=15% Similarity=0.286 Sum_probs=41.0
Q ss_pred chHHHHHHHHHHhcCCCCcHHHHHHHHhcccccHHHHHHHHHHHHHcCCcc
Q 027236 6 DNTEAIVLNYVNEQNRPLNSQNVADALQKYNLKKAGIQKALDSLADNGKIS 56 (226)
Q Consensus 6 ~ea~~~Il~y~~~~nrPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~ 56 (226)
++....||.++.. +.|.+..+|...+ |++.++|.+.|+.|.+.|.|.
T Consensus 6 d~~~~~iL~~L~~-~~~~s~~ela~~l---g~s~~tv~~~l~~L~~~G~i~ 52 (150)
T 2w25_A 6 DDIDRILVRELAA-DGRATLSELATRA---GLSVSAVQSRVRRLESRGVVQ 52 (150)
T ss_dssp CHHHHHHHHHHHH-CTTCCHHHHHHHH---TSCHHHHHHHHHHHHHTTSEE
T ss_pred CHHHHHHHHHHHH-cCCCCHHHHHHHH---CcCHHHHHHHHHHHHHCCCEE
Confidence 4566789999864 5678999999988 899999999999999999995
No 163
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=88.85 E-value=1.1 Score=34.85 Aligned_cols=48 Identities=17% Similarity=0.326 Sum_probs=41.7
Q ss_pred chHHHHHHHHHHhcCCCCcHHHHHHHHhcccccHHHHHHHHHHHHHcCCcce
Q 027236 6 DNTEAIVLNYVNEQNRPLNSQNVADALQKYNLKKAGIQKALDSLADNGKISF 57 (226)
Q Consensus 6 ~ea~~~Il~y~~~~nrPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~ 57 (226)
++....|+.++.. |-+-|..+|...+ |++.++|...|+.|.+.|.|..
T Consensus 16 d~~d~~IL~~L~~-~~~~s~~eLA~~l---glS~~tv~~~l~~L~~~G~I~~ 63 (171)
T 2ia0_A 16 DDLDRNILRLLKK-DARLTISELSEQL---KKPESTIHFRIKKLQERGVIER 63 (171)
T ss_dssp CHHHHHHHHHHHH-CTTCCHHHHHHHH---TSCHHHHHHHHHHHHHTTSEEE
T ss_pred CHHHHHHHHHHHH-cCCCCHHHHHHHH---CcCHHHHHHHHHHHHHCCCEEe
Confidence 6677789999875 5568988999988 8999999999999999999963
No 164
>3eqx_A FIC domain containing transcriptional regulator; FIC family protein, structural genomics, joint center for ST genomics, JCSG; HET: MSE PGE; 1.60A {Shewanella oneidensis}
Probab=88.74 E-value=0.5 Score=41.81 Aligned_cols=54 Identities=22% Similarity=0.258 Sum_probs=39.9
Q ss_pred HHHHHHHhcCCCCcHHHHHHHHhcccccHHHHHHHHHHHHHcCCcceeecCceeEEEe
Q 027236 11 IVLNYVNEQNRPLNSQNVADALQKYNLKKAGIQKALDSLADNGKISFKEYGKQKIYIA 68 (226)
Q Consensus 11 ~Il~y~~~~nrPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~K~~GK~kiY~~ 68 (226)
.+++++..+ -.+++.++...+ +++.+++.+.|..|++.|.|..-.-|+.++|..
T Consensus 301 ~ll~~l~~~-p~~t~~~~~~~~---~~S~~TA~r~L~~L~e~GiL~~~~~gR~~~y~~ 354 (373)
T 3eqx_A 301 ELVQVIFEQ-PYCRIQNLVESG---LAKRQTASVYLKQLCDIGVLEEVQSGKEKLFVH 354 (373)
T ss_dssp HHHHHHHHC-SEEEHHHHHHTS---SSCHHHHHHHHHHHHHTTSCEEC--CCSCEEEC
T ss_pred HHHHHHHHC-CCccHHHHHHHh---CcCHHHHHHHHHHHHHCCcEEEeCCCCceEeeh
Confidence 355555542 235666665544 899999999999999999999888899998876
No 165
>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0
Probab=88.67 E-value=0.58 Score=36.37 Aligned_cols=54 Identities=22% Similarity=0.340 Sum_probs=41.2
Q ss_pred HHHHHHHh-cCCCCcHHHHHHHHhcccccHHHHHHHHHHHHHcCCcceeecCceeEEEe
Q 027236 11 IVLNYVNE-QNRPLNSQNVADALQKYNLKKAGIQKALDSLADNGKISFKEYGKQKIYIA 68 (226)
Q Consensus 11 ~Il~y~~~-~nrPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~K~~GK~kiY~~ 68 (226)
.+|-||-. .++|.|..+|...+ +|+...|.++|..|...|+|.+.. |+.==|..
T Consensus 16 r~l~~La~~~~~~~s~~~IA~~~---~is~~~l~kil~~L~~aGlv~s~r-G~~GGy~L 70 (162)
T 3k69_A 16 HSILYLDAHRDSKVASRELAQSL---HLNPVMIRNILSVLHKHGYLTGTV-GKNGGYQL 70 (162)
T ss_dssp HHHHHHHTTTTSCBCHHHHHHHH---TSCGGGTHHHHHHHHHTTSSEEEC-STTCEEEC
T ss_pred HHHHHHHhCCCCCcCHHHHHHHH---CcCHHHHHHHHHHHHHCCCEEeec-CCCCCeEe
Confidence 45566654 47899999998877 799999999999999999987653 44323443
No 166
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=88.65 E-value=0.87 Score=35.68 Aligned_cols=56 Identities=18% Similarity=0.318 Sum_probs=43.4
Q ss_pred hHHHHHHHHHHhcCC-------CCcHHHHHHHHhcccccHHHHHHHHHHHHHcCCcceeecCceeEEEe
Q 027236 7 NTEAIVLNYVNEQNR-------PLNSQNVADALQKYNLKKAGIQKALDSLADNGKISFKEYGKQKIYIA 68 (226)
Q Consensus 7 ea~~~Il~y~~~~nr-------Pys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~K~~GK~kiY~~ 68 (226)
.++++|..|+..... |++-++|.+.+ |++..+|-++|..|.++|+|... ..+|...
T Consensus 147 ~~~~Rl~~~L~~~~~~~~~~~~~~t~~~lA~~l---g~sr~tvsR~l~~L~~~g~I~~~---~~~i~i~ 209 (220)
T 3dv8_A 147 SLDKRVASFLLEETSIEGTNELKITHETIANHL---GSHREVITRMLRYFQVEGLVKLS---RGKITIL 209 (220)
T ss_dssp CHHHHHHHHHHHHHHHHTSSEECCCHHHHHHHH---TCCHHHHHHHHHHHHHTTSEEEE---TTEEEES
T ss_pred CHHHHHHHHHHHhhhhcCCceecCCHHHHHHHh---CCCHHHHHHHHHHHHHCCCEEeC---CCEEEEe
Confidence 456777777766433 89999999988 89999999999999999999643 3345444
No 167
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=88.50 E-value=1.6 Score=33.82 Aligned_cols=54 Identities=15% Similarity=0.288 Sum_probs=41.5
Q ss_pred HHHHHHHh--cCCCCcHHHHHHHHhcccccHHHHHHHHHHHHHcCCcceeecCceeEEEe
Q 027236 11 IVLNYVNE--QNRPLNSQNVADALQKYNLKKAGIQKALDSLADNGKISFKEYGKQKIYIA 68 (226)
Q Consensus 11 ~Il~y~~~--~nrPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~K~~GK~kiY~~ 68 (226)
.++-||-. .++|.++.+|...+ +|+...|.++|..|...|+|.+.. |..==|+.
T Consensus 31 r~L~~LA~~~~~~~~s~~eIA~~~---~i~~~~l~kil~~L~~aGlv~s~r-G~~GGy~L 86 (159)
T 3lwf_A 31 TITLELAKRIGDGPISLRSIAQDK---NLSEHYLEQLIGPLRNAGIVKSIR-GAHGGYVL 86 (159)
T ss_dssp HHHHHHHHTTTSCCBCHHHHHHHH---TCCHHHHHHHHHHHHHTTSEEEEC-STTCEEEE
T ss_pred HHHHHHHhcCCCCCcCHHHHHHHH---CcCHHHHHHHHHHHHHCCeEEEec-CCCCceEe
Confidence 34555543 35799999998887 799999999999999999999875 33323444
No 168
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=88.47 E-value=1.6 Score=32.71 Aligned_cols=60 Identities=20% Similarity=0.319 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027236 78 SEELNQMKEENAKLQEQLEEQRKAISKLEGEIRTLQSNLTLEQIREKEAQLVKEVKEMENKLAKL 142 (226)
Q Consensus 78 ~ee~~~l~~~i~~l~~~l~~l~~~~k~l~~el~~l~~~~t~~el~~~i~~L~~e~~~l~~kL~~l 142 (226)
..++..+...+..|+.++..++.....|+..|+.+.... ...+..++..+..++..|..+
T Consensus 37 k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~-----~~~l~~~q~~i~~lE~eL~~~ 96 (131)
T 3tnu_A 37 KSEISELRRTMQNLEIELQSQLSMKASLENSLEETKGRY-----CMQLAQIQEMIGSVEEQLAQL 96 (131)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666666666666666666666665555432 223334444444444444443
No 169
>3dfg_A Xcrecx, regulatory protein RECX; RECX RECA, homologous recombination, tandem repeats, three-helix bundle, cytoplasm; 1.50A {Xanthomonas campestris PV}
Probab=88.46 E-value=0.83 Score=35.47 Aligned_cols=54 Identities=17% Similarity=0.216 Sum_probs=47.3
Q ss_pred chHHHHHHHHHHhcCCCCcHHHHHHHHhcccccHHHHHHHHHHHHHcCCcceeecC
Q 027236 6 DNTEAIVLNYVNEQNRPLNSQNVADALQKYNLKKAGIQKALDSLADNGKISFKEYG 61 (226)
Q Consensus 6 ~ea~~~Il~y~~~~nrPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~K~~G 61 (226)
..+....+.||- .|++|-.+|..-|...|++...|..+|+.|.+.|.|.-..|.
T Consensus 17 ~~a~~~Al~~Ls--~r~~s~~EL~~KL~~kg~~~e~Ie~vl~~l~~~g~ldD~rfA 70 (162)
T 3dfg_A 17 QTPVQRALGLLV--HREHSKKELNRKLQARGIEPEAAQAAVERLAGEGWQDDVRFA 70 (162)
T ss_dssp CCHHHHHHHHHH--HSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCCHHHHH
T ss_pred HHHHHHHHHHhh--chhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCHHHHH
Confidence 688889999997 679999999999988899999999999999999987655553
No 170
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=88.24 E-value=1 Score=33.88 Aligned_cols=47 Identities=28% Similarity=0.440 Sum_probs=40.9
Q ss_pred chHHHHHHHHHHhcCCCCcHHHHHHHHhcccccHHHHHHHHHHHHHcCCcc
Q 027236 6 DNTEAIVLNYVNEQNRPLNSQNVADALQKYNLKKAGIQKALDSLADNGKIS 56 (226)
Q Consensus 6 ~ea~~~Il~y~~~~nrPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~ 56 (226)
++....|+.++.. |-+-|..+|...+ |++.++|.+.|..|.+.|.|.
T Consensus 8 d~~d~~il~~L~~-~~~~s~~ela~~l---g~s~~tv~~~l~~L~~~G~i~ 54 (151)
T 2dbb_A 8 DRVDMQLVKILSE-NSRLTYRELADIL---NTTRQRIARRIDKLKKLGIIR 54 (151)
T ss_dssp CHHHHHHHHHHHH-CTTCCHHHHHHHT---TSCHHHHHHHHHHHHHHTSEE
T ss_pred CHHHHHHHHHHHH-cCCCCHHHHHHHH---CcCHHHHHHHHHHHHHCCCEE
Confidence 5666789998875 5668988998877 899999999999999999997
No 171
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=88.19 E-value=1.2 Score=33.55 Aligned_cols=48 Identities=15% Similarity=0.198 Sum_probs=41.7
Q ss_pred chHHHHHHHHHHhcCCCCcHHHHHHHHhcccccHHHHHHHHHHHHHcCCcce
Q 027236 6 DNTEAIVLNYVNEQNRPLNSQNVADALQKYNLKKAGIQKALDSLADNGKISF 57 (226)
Q Consensus 6 ~ea~~~Il~y~~~~nrPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~ 57 (226)
++....|+.++... .+-+..+|...+ |++.++|...|+.|.+.|.|..
T Consensus 7 d~~d~~il~~L~~~-~~~s~~ela~~l---g~s~~tv~~~l~~L~~~G~i~~ 54 (152)
T 2cg4_A 7 DNLDRGILEALMGN-ARTAYAELAKQF---GVSPETIHVRVEKMKQAGIITG 54 (152)
T ss_dssp CHHHHHHHHHHHHC-TTSCHHHHHHHH---TSCHHHHHHHHHHHHHHTSEEE
T ss_pred CHHHHHHHHHHHHc-CCCCHHHHHHHH---CcCHHHHHHHHHHHHHcCCcce
Confidence 56677899988764 567888999888 8999999999999999999985
No 172
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=88.05 E-value=1 Score=33.32 Aligned_cols=51 Identities=16% Similarity=0.183 Sum_probs=37.8
Q ss_pred hHHHHHHHHHHhc----CCCCcHHHHHHHHhcccccHHHHHHHHHHHHHcCCcceeec
Q 027236 7 NTEAIVLNYVNEQ----NRPLNSQNVADALQKYNLKKAGIQKALDSLADNGKISFKEY 60 (226)
Q Consensus 7 ea~~~Il~y~~~~----nrPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~K~~ 60 (226)
..+-.|+-|+... +.+.|..+|.+.+ +++.++|..+|+.|++.|+|..+..
T Consensus 32 ~~e~~vll~L~~~~~~~~~~ps~~~LA~~l---~~s~~~V~~~l~~Le~kGlI~~~~~ 86 (128)
T 2vn2_A 32 EGELVLLLHMQSFFEEGVLFPTPAELAERM---TVSAAECMEMVRRLLQKGMIAIEEH 86 (128)
T ss_dssp HHHHHHHHHHHHHHTTTCSSCCHHHHHHTS---SSCHHHHHHHHHHHHHTTSSEECC-
T ss_pred HHHHHHHHHHHHHHhcCCCCCCHHHHHHHH---CcCHHHHHHHHHHHHHCCCEEEEeE
Confidence 3444566666653 3335877777766 8999999999999999999988644
No 173
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=88.04 E-value=2.1 Score=30.79 Aligned_cols=51 Identities=12% Similarity=0.192 Sum_probs=37.2
Q ss_pred chHHHHHHHHHHhc-CCC----CcHHHHHHHHhcccccHHHHHHHHHHHHHcCCcceee
Q 027236 6 DNTEAIVLNYVNEQ-NRP----LNSQNVADALQKYNLKKAGIQKALDSLADNGKISFKE 59 (226)
Q Consensus 6 ~ea~~~Il~y~~~~-nrP----ys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~K~ 59 (226)
+...+.|.+.+... ..| -|..++...+ ||+.+.|.++|..|+++|+|....
T Consensus 12 ~~i~~~i~~~I~~g~~~~G~~lPs~~~La~~~---~vSr~tvr~al~~L~~~Gli~~~~ 67 (113)
T 3tqn_A 12 QQLRDKIVEAIIDGSYVEGEMIPSIRKISTEY---QINPLTVSKAYQSLLDDNVIEKRR 67 (113)
T ss_dssp HHHHHHHHHHHHHTSSCTTCEECCHHHHHHHH---TCCHHHHHHHHHHHHHTTSEEEET
T ss_pred HHHHHHHHHHHHcCCCCCCCcCcCHHHHHHHH---CcCHHHHHHHHHHHHHCCCEEEec
Confidence 44445555555542 333 2877887777 899999999999999999987664
No 174
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=87.95 E-value=0.71 Score=37.34 Aligned_cols=49 Identities=4% Similarity=0.164 Sum_probs=40.7
Q ss_pred HHHHHHHHHhcCCCCcHHHHHHHHhcccccHHHHHHHHHHHHHcCCcceeecC
Q 027236 9 EAIVLNYVNEQNRPLNSQNVADALQKYNLKKAGIQKALDSLADNGKISFKEYG 61 (226)
Q Consensus 9 ~~~Il~y~~~~nrPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~K~~G 61 (226)
-..|+.. ...+.|-+..+|...| +|++++|.++|+.|.++|+|....++
T Consensus 8 L~~I~~l-~~~~~~~~~~~lA~~l---~vs~~tvs~~l~~Le~~GlV~r~~~~ 56 (214)
T 3hrs_A 8 LKCLYEL-GTRHNKITNKEIAQLM---QVSPPAVTEMMKKLLAEELLIKDKKA 56 (214)
T ss_dssp HHHHHHT-TSSCSCCCHHHHHHHH---TCCHHHHHHHHHHHHHTTSEEEETTT
T ss_pred HHHHHHH-HhcCCCcCHHHHHHHH---CCChhHHHHHHHHHHHCCCEEEecCC
Confidence 3444443 3467899999999988 79999999999999999999998874
No 175
>1xma_A Predicted transcriptional regulator; southea collaboratory for structural genomics, secsg, protein struc initiative, PSI; 2.30A {Clostridium thermocellum} SCOP: a.4.5.61
Probab=87.93 E-value=1.8 Score=32.86 Aligned_cols=61 Identities=21% Similarity=0.305 Sum_probs=45.5
Q ss_pred chHHHHHHHHHHhcCCCCcHHHHHHHHhc-----ccccHHHHHHHHHHHHHcCCcceeec----Cce-eEEEe
Q 027236 6 DNTEAIVLNYVNEQNRPLNSQNVADALQK-----YNLKKAGIQKALDSLADNGKISFKEY----GKQ-KIYIA 68 (226)
Q Consensus 6 ~ea~~~Il~y~~~~nrPys~~di~~~l~~-----~~v~K~~v~k~L~~Lv~~g~i~~K~~----GK~-kiY~~ 68 (226)
.--+-.||.++.. .|.+.-+|...+.. .+++..+|-.+|+.|.++|+|..... |.. ++|..
T Consensus 40 g~~~~~IL~~L~~--~~~~gyeI~~~l~~~~~~~~~is~gtLy~~L~rLE~~GlI~~~~~~~~~~~~rk~Y~L 110 (145)
T 1xma_A 40 GYVDTIILSLLIE--GDSYGYEISKNIRIKTDELYVIKETTLYSAFARLEKNGYIKSYYGEETQGKRRTYYRI 110 (145)
T ss_dssp GTHHHHHHHHHHH--CCEEHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHTTSEEEEEEEEC--CEEEEEEE
T ss_pred CcHHHHHHHHHHh--CCCCHHHHHHHHHHhhCCccCcChhHHHHHHHHHHHCCCEEEEEeccCCCCCeEEEEE
Confidence 4457788998864 67777777777743 15999999999999999999988754 444 55544
No 176
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=87.73 E-value=0.82 Score=36.60 Aligned_cols=50 Identities=12% Similarity=0.073 Sum_probs=42.7
Q ss_pred hHHHHHHHHHHhcCCCCcHHHHHHHHhcccccHHHHHHHHHHHHHcCCcceeec
Q 027236 7 NTEAIVLNYVNEQNRPLNSQNVADALQKYNLKKAGIQKALDSLADNGKISFKEY 60 (226)
Q Consensus 7 ea~~~Il~y~~~~nrPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~K~~ 60 (226)
..+-.||.++... .|-+..+|...+ ++++++|..+|+.|++.|+|.....
T Consensus 48 ~~q~~iL~~L~~~-~~~t~~eLa~~l---~i~~stvs~~l~~Le~~GlV~r~~~ 97 (207)
T 2fxa_A 48 INEHHILWIAYQL-NGASISEIAKFG---VMHVSTAFNFSKKLEERGYLRFSKR 97 (207)
T ss_dssp HHHHHHHHHHHHH-TSEEHHHHHHHT---TCCHHHHHHHHHHHHHHTSEEEECC
T ss_pred HHHHHHHHHHHHC-CCcCHHHHHHHH---CCCHHHHHHHHHHHHHCCCEEEecC
Confidence 4456788888765 589999998887 7999999999999999999998765
No 177
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=87.71 E-value=1.2 Score=34.45 Aligned_cols=48 Identities=13% Similarity=0.191 Sum_probs=39.6
Q ss_pred hHHHHHHHHHHhcC-------------CCCcHHHHHHHHhcccccHHHHHHHHHHHHHcCCcce
Q 027236 7 NTEAIVLNYVNEQN-------------RPLNSQNVADALQKYNLKKAGIQKALDSLADNGKISF 57 (226)
Q Consensus 7 ea~~~Il~y~~~~n-------------rPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~ 57 (226)
.++++|..|+.... -|++-++|.+.+ |++..+|.++|..|.++|.|..
T Consensus 139 ~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~iA~~l---g~sr~tvsR~l~~L~~~g~I~~ 199 (210)
T 3ryp_A 139 DVTGRIAQTLLNLAKQPDAMTHPDGMQIKITRQEIGQIV---GCSRETVGRILKMLEDQNLISA 199 (210)
T ss_dssp CHHHHHHHHHHHHTTSTTCEEETTEEEEECCHHHHHHHH---TCCHHHHHHHHHHHHHTTSEEE
T ss_pred CHHHHHHHHHHHHHHhcCcCCCCCceEeccCHHHHHHHh---CCcHHHHHHHHHHHHHCCcEEe
Confidence 46677777776532 178889999888 8999999999999999999975
No 178
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=87.47 E-value=2.7 Score=28.25 Aligned_cols=36 Identities=25% Similarity=0.330 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 027236 80 ELNQMKEENAKLQEQLEEQRKAISKLEGEIRTLQSN 115 (226)
Q Consensus 80 e~~~l~~~i~~l~~~l~~l~~~~k~l~~el~~l~~~ 115 (226)
++...+..|.++..++.+....+..|+.+|..+++.
T Consensus 34 ELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKfrSV 69 (72)
T 3nmd_A 34 ELRQRDALIDELELELDQKDELIQMLQNELDKYRSV 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 344455566666666666666666666666666554
No 179
>4g6q_A Putative uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.08A {Kribbella flavida}
Probab=87.47 E-value=1.4 Score=34.69 Aligned_cols=65 Identities=12% Similarity=0.205 Sum_probs=53.0
Q ss_pred chHHHHHHHHHHhcCCCCcHHHHHHHHhcccccHHHHHHHHHHHHHcCCcceeecC-----ceeEEEeecCCCC
Q 027236 6 DNTEAIVLNYVNEQNRPLNSQNVADALQKYNLKKAGIQKALDSLADNGKISFKEYG-----KQKIYIARQDQFD 74 (226)
Q Consensus 6 ~ea~~~Il~y~~~~nrPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~K~~G-----K~kiY~~~Q~~~~ 74 (226)
+-.+-.|+.+|. .+|.++.+|...|. +++.++|-.-|..|.+-|+|....-| ..++|-+....+.
T Consensus 22 ~P~Rl~il~~L~--~~~~~~~~l~~~l~--~~~~~~~s~Hl~~L~~aglv~~~~e~~~~g~~er~y~~~~~~~~ 91 (182)
T 4g6q_A 22 HPLRWRITQLLI--GRSLTTRELAELLP--DVATTTLYRQVGILVKAGVLMVTAEHQVRGAVERTYTLNTQAGD 91 (182)
T ss_dssp SHHHHHHHHHTT--TSCEEHHHHHHHCT--TBCHHHHHHHHHHHHHHTSEEEEEEEEETTEEEEEEEECTTTTT
T ss_pred CHHHHHHHHHHH--hCCCCHHHHHHHhc--CCCHHHHHHHHHHHHHCCCeEEEEeecccCcceeEEEecccccc
Confidence 567788999985 58999999998883 58999999999999999999865443 3588888777653
No 180
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=87.25 E-value=2.3 Score=30.33 Aligned_cols=59 Identities=24% Similarity=0.411 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHH
Q 027236 79 EELNQMKEENAKLQEQLEEQRKAISKLEGEIRTLQSNLTLEQIREKEAQLVKEVKEMENKL 139 (226)
Q Consensus 79 ee~~~l~~~i~~l~~~l~~l~~~~k~l~~el~~l~~~~t~~el~~~i~~L~~e~~~l~~kL 139 (226)
.++..+..++..|..++.....++..|...|..-+.. ..++......++.++.+|...|
T Consensus 5 ~~~e~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~--R~~aE~~~~~ie~ElEeLTasL 63 (97)
T 2eqb_B 5 SNYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENEL--RTKAEEEADKLNKEVEDLTASL 63 (97)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555666666666666555555555555444322 1233444555555555555555
No 181
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=87.15 E-value=2.2 Score=39.24 Aligned_cols=65 Identities=18% Similarity=0.240 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC---------CHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027236 78 SEELNQMKEENAKLQEQLEEQRKAISKLEGEIRTLQSNL---------TLEQIREKEAQLVKEVKEMENKLAKL 142 (226)
Q Consensus 78 ~ee~~~l~~~i~~l~~~l~~l~~~~k~l~~el~~l~~~~---------t~~el~~~i~~L~~e~~~l~~kL~~l 142 (226)
-+++..++.+..+++.++..++.+.+.+..++..+.+.. ..++|.++..+|.++++++++++..+
T Consensus 69 ~~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~~ 142 (501)
T 1wle_A 69 LPGIISTWQELRQLREQIRSLEEEKEAVTEAVRALVVNQDNSQVQQDPQYQSLRARGREIRKQLTLLYPKEAQL 142 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888899999999999999999999999998876432 23466666666666666655554443
No 182
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=86.73 E-value=2.7 Score=32.63 Aligned_cols=54 Identities=13% Similarity=0.291 Sum_probs=45.3
Q ss_pred chHHHHHHHHHHhcCCCCcHHHHHHHHhcccccHHHHHHHHHHHHHcCCcce-------eecCce
Q 027236 6 DNTEAIVLNYVNEQNRPLNSQNVADALQKYNLKKAGIQKALDSLADNGKISF-------KEYGKQ 63 (226)
Q Consensus 6 ~ea~~~Il~y~~~~nrPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~-------K~~GK~ 63 (226)
++....|+.++... -+-+..+|...+ |++.++|..-|+.|.+.|.|.. ...|..
T Consensus 26 d~~d~~IL~~L~~~-~~~s~~eLA~~l---glS~~tv~~rl~~L~~~G~I~~~~a~vd~~~~G~~ 86 (171)
T 2e1c_A 26 DEIDKKIIKILQND-GKAPLREISKIT---GLAESTIHERIRKLRESGVIKKFTAIIDPEALGYS 86 (171)
T ss_dssp CHHHHHHHHHHHHC-TTCCHHHHHHHH---TSCHHHHHHHHHHHHHTTSSCCCCCCCCGGGGTCC
T ss_pred CHHHHHHHHHHHHc-CCCCHHHHHHHH---CcCHHHHHHHHHHHHHCCCeEeeeEEECHHHcCCC
Confidence 66777899999864 468888999888 8999999999999999999975 556754
No 183
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=86.45 E-value=2.5 Score=28.74 Aligned_cols=49 Identities=16% Similarity=0.198 Sum_probs=38.3
Q ss_pred hHHHHHHHHHHhcC--CCCcHHHHHHHHhcccccHHHHHHHHHHHHHcCCccee
Q 027236 7 NTEAIVLNYVNEQN--RPLNSQNVADALQKYNLKKAGIQKALDSLADNGKISFK 58 (226)
Q Consensus 7 ea~~~Il~y~~~~n--rPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~K 58 (226)
+.-++|+.++..-. .-+++.+|..-| |++|+.|.++|=+|..+|.|.+-
T Consensus 12 ~~~~~v~~~i~~L~~~~~~Ta~~IAkkL---g~sK~~vNr~LY~L~kkG~V~~~ 62 (75)
T 1sfu_A 12 EIFSLVKKEVLSLNTNDYTTAISLSNRL---KINKKKINQQLYKLQKEDTVKMV 62 (75)
T ss_dssp HHHHHHHHHHHTSCTTCEECHHHHHHHT---TCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHhCCCCcchHHHHHHHHH---CCCHHHHHHHHHHHHHCCCEecC
Confidence 45566666666433 346888888777 89999999999999999999775
No 184
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=86.10 E-value=2.3 Score=31.53 Aligned_cols=51 Identities=12% Similarity=0.197 Sum_probs=36.4
Q ss_pred chHHHHHHHHHHhc-CC---CC-cHHHHHHHHhcccccHHHHHHHHHHHHHcCCcceee
Q 027236 6 DNTEAIVLNYVNEQ-NR---PL-NSQNVADALQKYNLKKAGIQKALDSLADNGKISFKE 59 (226)
Q Consensus 6 ~ea~~~Il~y~~~~-nr---Py-s~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~K~ 59 (226)
+..-+.|.+.+... .. +. |..++...+ ||+.+.|.++|..|..+|+|....
T Consensus 7 ~~i~~~i~~~I~~g~l~~G~~LPse~~La~~~---gvSr~tVr~Al~~L~~~Gli~~~~ 62 (129)
T 2ek5_A 7 KQIASLIEDSIVDGTLSIDQRVPSTNELAAFH---RINPATARNGLTLLVEAGILYKKR 62 (129)
T ss_dssp HHHHHHHHHHHHTTSSCTTSCBCCHHHHHHHT---TCCHHHHHHHHHHHHTTTSEEEET
T ss_pred HHHHHHHHHHHHhCCCCCCCcCcCHHHHHHHH---CcCHHHHHHHHHHHHHCCcEEEec
Confidence 44444555554432 22 23 777777766 899999999999999999997654
No 185
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=86.06 E-value=2.9 Score=31.40 Aligned_cols=59 Identities=15% Similarity=0.233 Sum_probs=40.9
Q ss_pred hHHHHHHHHHHh---c-CCCCcHHHHHHHHhcccccHHHHHHHHHHHHHcCCcceeec----Cce-eEEEe
Q 027236 7 NTEAIVLNYVNE---Q-NRPLNSQNVADALQKYNLKKAGIQKALDSLADNGKISFKEY----GKQ-KIYIA 68 (226)
Q Consensus 7 ea~~~Il~y~~~---~-nrPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~K~~----GK~-kiY~~ 68 (226)
+.+-.|+=++.. + +.+-|..+|.+.+ +++.+.|.++|++|+++|.|.-+.. |+. .+|..
T Consensus 32 ~~E~~lLl~L~~~~~~g~~~ps~~~LA~~~---~~s~~~v~~~L~~L~~KGlI~i~~~~d~~g~~~~~ydL 99 (135)
T 2v79_A 32 ETELILLLKIKMHLEKGSYFPTPNQLQEGM---SISVEECTNRLRMFIQKGFLFIEECEDQNGIKFEKYSL 99 (135)
T ss_dssp HHHHHHHHHHHHHHTTTCCSCCHHHHHTTS---SSCHHHHHHHHHHHHHHTSCEEEEEECTTCCEEEEEEC
T ss_pred HHHHHHHHHHHHHHhcCCCCCCHHHHHHHH---CcCHHHHHHHHHHHHHCCCEEEEeEecCCCceEEEeeH
Confidence 344455544444 2 4555777766655 8999999999999999999998544 555 44444
No 186
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=85.90 E-value=1.1 Score=33.66 Aligned_cols=47 Identities=13% Similarity=0.287 Sum_probs=35.1
Q ss_pred HHHHHHHHHHhcC----CCCcHHHHHHHHhcccccHHHHHHHHHHHHHcCCcce
Q 027236 8 TEAIVLNYVNEQN----RPLNSQNVADALQKYNLKKAGIQKALDSLADNGKISF 57 (226)
Q Consensus 8 a~~~Il~y~~~~n----rPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~ 57 (226)
.+-.||.++.... .|.+..+|...+ ++++++|..+++.|+..|+|..
T Consensus 34 ~q~~vL~~l~~~~~~~~~~~t~~eLa~~l---~~~~~tvsr~v~~Le~~glVr~ 84 (148)
T 4fx0_A 34 TQFSTLAVISLSEGSAGIDLTMSELAARI---GVERTTLTRNLEVMRRDGLVRV 84 (148)
T ss_dssp HHHHHHHHHHC---------CHHHHHHHH---TCCHHHHHHHHHHHHHTTSBC-
T ss_pred HHHHHHHHHHHhcCCCCCCcCHHHHHHHH---CCChhhHHHHHHHHHHCCCEEe
Confidence 3456777776543 468999998888 7999999999999999999854
No 187
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=85.87 E-value=3.8 Score=41.15 Aligned_cols=23 Identities=9% Similarity=0.163 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 027236 120 QIREKEAQLVKEVKEMENKLAKL 142 (226)
Q Consensus 120 el~~~i~~L~~e~~~l~~kL~~l 142 (226)
+|...+..|++++..|+..+..+
T Consensus 1020 ~L~~kv~~L~~e~~~L~qq~~~l 1042 (1080)
T 2dfs_A 1020 ETEQLVSELKEQNTLLKTEKEEL 1042 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444333
No 188
>1bja_A Transcription regulatory protein MOTA; activation domain, middle mode transcription, alpha helical structure, transcription regulation; 2.19A {Enterobacteria phage T4} SCOP: a.4.5.9 PDB: 1i1s_A
Probab=85.86 E-value=1.2 Score=31.77 Aligned_cols=51 Identities=16% Similarity=0.294 Sum_probs=42.6
Q ss_pred hHHHHHHHHHHhcCCCCcHHHHHH-HHhcccccHHHHHHHHHHHHHcCCcceeecCce
Q 027236 7 NTEAIVLNYVNEQNRPLNSQNVAD-ALQKYNLKKAGIQKALDSLADNGKISFKEYGKQ 63 (226)
Q Consensus 7 ea~~~Il~y~~~~nrPys~~di~~-~l~~~~v~K~~v~k~L~~Lv~~g~i~~K~~GK~ 63 (226)
..+--||-++.... |-|+.+|.+ .+ ++.+++|-..|+.|..+|+|. .-|.-
T Consensus 16 ~~QfsiL~~L~~~~-~~t~~~Lae~~l---~~drstvsrnl~~L~r~GlVe--~~~~D 67 (95)
T 1bja_A 16 EKTATILITIAKKD-FITAAEVREVHP---DLGNAVVNSNIGVLIKKGLVE--KSGDG 67 (95)
T ss_dssp HHHHHHHHHHHHST-TBCHHHHHHTCT---TSCHHHHHHHHHHHHTTTSEE--EETTE
T ss_pred HHHHHHHHHHHHCC-CCCHHHHHHHHh---cccHHHHHHHHHHHHHCCCee--cCCCC
Confidence 45667888898777 999999999 44 799999999999999999998 33444
No 189
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=85.60 E-value=3.1 Score=30.51 Aligned_cols=52 Identities=13% Similarity=0.146 Sum_probs=36.9
Q ss_pred chHHHHHHHHHHh-cCC---CC-cHHHHHHHHhcccccHHHHHHHHHHHHHcCCcceeec
Q 027236 6 DNTEAIVLNYVNE-QNR---PL-NSQNVADALQKYNLKKAGIQKALDSLADNGKISFKEY 60 (226)
Q Consensus 6 ~ea~~~Il~y~~~-~nr---Py-s~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~K~~ 60 (226)
+...+.|.+.+.. ... ++ |..++...+ ||+.+.|.++|..|+++|+|.....
T Consensus 16 ~~i~~~i~~~I~~g~~~~g~~Lps~~~La~~~---~vSr~tvr~Al~~L~~~G~i~~~~g 72 (125)
T 3neu_A 16 SQISDWMKKQMITGEWKGEDKLPSVREMGVKL---AVNPNTVSRAYQELERAGYIYAKRG 72 (125)
T ss_dssp HHHHHHHHHHHHTTSSCTTCBCCCHHHHHHHH---TCCHHHHHHHHHHHHHTTSEEEETT
T ss_pred HHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHH---CcCHHHHHHHHHHHHHCCeEEEecC
Confidence 3444445555443 222 22 777887777 8999999999999999999977644
No 190
>4esb_A Transcriptional regulator, PADR family; DNA binding protein, HTH fold; 2.50A {Bacillus cereus}
Probab=85.53 E-value=5.4 Score=28.83 Aligned_cols=60 Identities=17% Similarity=0.161 Sum_probs=45.2
Q ss_pred hHHHHHHHHHHhcCCCCcHHHHHHHHhc---ccccHHHHHHHHHHHHHcCCcceeec----Cce-eEEEe
Q 027236 7 NTEAIVLNYVNEQNRPLNSQNVADALQK---YNLKKAGIQKALDSLADNGKISFKEY----GKQ-KIYIA 68 (226)
Q Consensus 7 ea~~~Il~y~~~~nrPys~~di~~~l~~---~~v~K~~v~k~L~~Lv~~g~i~~K~~----GK~-kiY~~ 68 (226)
--+-.||..+. ..|..--+|...+.. ..++-.++-.+|..|.++|+|..... |.. ++|..
T Consensus 9 ~l~~~IL~~L~--~~~~~Gyei~~~l~~~~~~~is~gtlY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y~L 76 (115)
T 4esb_A 9 VLEGCILYIIS--QEEVYGYELSTKLNKHGFTFVSEGSIYPLLLRMQKEKLIEGTLKASSLGPKRKYYHI 76 (115)
T ss_dssp THHHHHHHHHH--HSCEEHHHHHHHHHHTTCTTCCHHHHHHHHHHHHHTTSEEEEEEECTTSCEEEEEEE
T ss_pred HHHHHHHHHHH--cCCCCHHHHHHHHHHcCCCCCCcChHHHHHHHHHHCCCeEEEeeecCCCCCcEEEEE
Confidence 34567888887 367777788777753 25899999999999999999998753 555 55555
No 191
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=85.49 E-value=4 Score=24.13 Aligned_cols=41 Identities=22% Similarity=0.443 Sum_probs=22.7
Q ss_pred HHHHHHHHHHhcc-CCHHHHH---HHHHHHHHHHHHHHHHHHHhh
Q 027236 103 SKLEGEIRTLQSN-LTLEQIR---EKEAQLVKEVKEMENKLAKLR 143 (226)
Q Consensus 103 k~l~~el~~l~~~-~t~~el~---~~i~~L~~e~~~l~~kL~~l~ 143 (226)
..+.++|..+++. -+.+|+. .++..|++++..+.++|..++
T Consensus 3 aalkselqalkkegfspeelaaleselqalekklaalksklqalk 47 (48)
T 1g6u_A 3 AALKSELQALKKEGFSPEELAALESELQALEKKLAALKSKLQALK 47 (48)
T ss_dssp HHHHHHHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3455666666665 4444433 345555666666666665543
No 192
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=85.34 E-value=8 Score=28.63 Aligned_cols=22 Identities=23% Similarity=0.522 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 027236 92 QEQLEEQRKAISKLEGEIRTLQ 113 (226)
Q Consensus 92 ~~~l~~l~~~~k~l~~el~~l~ 113 (226)
+.++.+++..+..|+.+|..+.
T Consensus 35 k~Ei~elrr~iq~L~~el~~l~ 56 (129)
T 3tnu_B 35 KHEISEMNRMIQRLRAEIDNVK 56 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444443
No 193
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A
Probab=85.34 E-value=1.3 Score=38.92 Aligned_cols=46 Identities=15% Similarity=0.246 Sum_probs=40.5
Q ss_pred HHHHHHHHHHhcCCCCcHHHHHHHHhcccccHHHHHHHHHHHHHcCCcce
Q 027236 8 TEAIVLNYVNEQNRPLNSQNVADALQKYNLKKAGIQKALDSLADNGKISF 57 (226)
Q Consensus 8 a~~~Il~y~~~~nrPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~ 57 (226)
-+..||++++ .+.|.|-.+|...+ ++++++|.+.++.|.+.|+|..
T Consensus 17 n~~~il~~l~-~~~~~sr~~la~~~---~ls~~tv~~~v~~L~~~g~i~~ 62 (406)
T 1z6r_A 17 NAGAVYRLID-QLGPVSRIDLSRLA---QLAPASITKIVHEMLEAHLVQE 62 (406)
T ss_dssp HHHHHHHHHH-SSCSCCHHHHHHHT---TCCHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHHH-HcCCcCHHHHHHHH---CCCHHHHHHHHHHHHHCCcEEe
Confidence 3457999998 47899999998877 8999999999999999999977
No 194
>1w7p_D VPS36P, YLR417W; ESCRT-II complex, endosomal protein sorting, protein transpo; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54
Probab=85.26 E-value=2.4 Score=39.58 Aligned_cols=62 Identities=15% Similarity=0.192 Sum_probs=50.1
Q ss_pred chHHHHHHHHHHhcCCCCcHHHHHHHHh----cccccHHHHHHHHHHHHHcCCcceeecCceeEEEe
Q 027236 6 DNTEAIVLNYVNEQNRPLNSQNVADALQ----KYNLKKAGIQKALDSLADNGKISFKEYGKQKIYIA 68 (226)
Q Consensus 6 ~ea~~~Il~y~~~~nrPys~~di~~~l~----~~~v~K~~v~k~L~~Lv~~g~i~~K~~GK~kiY~~ 68 (226)
+.....|++++. .+..-++.++...+. +.+++...++.+|+.++.+|++..+.-....+||+
T Consensus 493 ~~~~~~il~l~~-~~g~vT~~~la~~lg~~~~~~~Ws~~~A~e~L~~~e~eG~l~rDd~~~G~~yyp 558 (566)
T 1w7p_D 493 DVVKEKLVDLIG-DNPGSDLLRLTQILSSNNSKSNWTLGILMEVLQNCVDEGDLLIDKQLSGIYYYK 558 (566)
T ss_dssp HHHHHHHHHHHT-TSTTCCHHHHHHHHSCSSSCCCBCHHHHHHHHHHHHHTTSEEEEEETTEEEEEE
T ss_pred hHHHHHHHHHHH-hcCCcCHHHHHHHhCCccccCcccHHHHHHHHHHHHHcCCEEEECCCCceEEeh
Confidence 456788889876 478889999999884 12499999999999999999999997544566666
No 195
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=85.21 E-value=15 Score=33.48 Aligned_cols=65 Identities=17% Similarity=0.188 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC---------HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 027236 79 EELNQMKEENAKLQEQLEEQRKAISKLEGEIRTLQSNLT---------LEQIREKEAQLVKEVKEMENKLAKLR 143 (226)
Q Consensus 79 ee~~~l~~~i~~l~~~l~~l~~~~k~l~~el~~l~~~~t---------~~el~~~i~~L~~e~~~l~~kL~~l~ 143 (226)
+++..++.++..++++.......+.....++........ .+.+.+.+..+++..+.++.++..++
T Consensus 456 ~e~~~~~~~i~~l~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 529 (597)
T 3oja_B 456 AEVNELRAEVQQLTNEQIQQEQLLQGLHAEIDTNLRRYRLPKDGLARSSDNLNKVFTHLKERQAFKLRETQARR 529 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCccccccCCHHHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 356666777777777777777777777777766554322 15566666666666666666665554
No 196
>3f8b_A Transcriptional regulator, PADR-like family; winged helix turn helix, transcription regulator; 2.00A {Lactococcus lactis subsp} SCOP: a.4.5.0 PDB: 3f8c_A* 3f8f_A*
Probab=84.78 E-value=6.1 Score=28.50 Aligned_cols=59 Identities=22% Similarity=0.284 Sum_probs=42.8
Q ss_pred HHHHHHHHHHhcCCCCcHHHHHHHHhc-----ccccHHHHHHHHHHHHHcCCcceee----cCce-eEEEe
Q 027236 8 TEAIVLNYVNEQNRPLNSQNVADALQK-----YNLKKAGIQKALDSLADNGKISFKE----YGKQ-KIYIA 68 (226)
Q Consensus 8 a~~~Il~y~~~~nrPys~~di~~~l~~-----~~v~K~~v~k~L~~Lv~~g~i~~K~----~GK~-kiY~~ 68 (226)
-+-.||..+.+ +|..--+|...+.. .+++..++-.+|..|.++|+|.... -|.. ++|..
T Consensus 13 l~~~IL~~L~~--~~~~Gyei~~~l~~~~~~~~~i~~gtly~~L~rLe~~GlI~~~~~~~~~~~~rk~Y~L 81 (116)
T 3f8b_A 13 TNVILLNVLKQ--GDNYVYGIIKQVKEASNGEMELNEATLYTIFKRLEKDGIISSYWGDESQGGRRKYYRL 81 (116)
T ss_dssp HHHHHHHHHHH--CCBCHHHHHHHHHHHTTTCCCCCHHHHHHHHHHHHHTTSEEEEEEC----CCEEEEEE
T ss_pred HHHHHHHHHHh--CCCCHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHCCCEEEEeeccCCCCCceEEEE
Confidence 34568888874 67666677766643 2699999999999999999999874 3444 55555
No 197
>1z05_A Transcriptional regulator, ROK family; structural genomics, protein structure initiative, midwest center for structural genomics; 2.00A {Vibrio cholerae o1 biovar eltor} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=84.69 E-value=1.3 Score=39.30 Aligned_cols=48 Identities=19% Similarity=0.266 Sum_probs=41.6
Q ss_pred HHHHHHHHHHhcCCCCcHHHHHHHHhcccccHHHHHHHHHHHHHcCCcceee
Q 027236 8 TEAIVLNYVNEQNRPLNSQNVADALQKYNLKKAGIQKALDSLADNGKISFKE 59 (226)
Q Consensus 8 a~~~Il~y~~~~nrPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~K~ 59 (226)
-+..||+++.. +.|.|-.+|...+ ++++++|.+.++.|.++|+|..-.
T Consensus 40 n~~~il~~l~~-~~~~sr~ela~~~---gls~~tv~~~v~~L~~~gli~~~~ 87 (429)
T 1z05_A 40 NAGRVYKLIDQ-KGPISRIDLSKES---ELAPASITKITRELIDAHLIHETT 87 (429)
T ss_dssp HHHHHHHHHHH-HCSBCHHHHHHHH---TCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHHHHH-cCCcCHHHHHHHH---CCCHHHHHHHHHHHHHCCCEEecc
Confidence 34569999986 5799999998877 899999999999999999997754
No 198
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=84.06 E-value=0.15 Score=36.28 Aligned_cols=38 Identities=16% Similarity=0.307 Sum_probs=31.5
Q ss_pred cCCCC-cHHHHHHHHhcccccHHHHHHHHHHHHHcCCcceee
Q 027236 19 QNRPL-NSQNVADALQKYNLKKAGIQKALDSLADNGKISFKE 59 (226)
Q Consensus 19 ~nrPy-s~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~K~ 59 (226)
.+.++ |..++...+ +|+.++|.++|..|.+.|+|....
T Consensus 31 ~g~~lps~~eLa~~~---~vSr~tvr~al~~L~~~Gli~~~~ 69 (102)
T 1v4r_A 31 PGDTLPSVADIRAQF---GVAAKTVSRALAVLKSEGLVSSRG 69 (102)
T ss_dssp TTSBCCCHHHHHHHS---SSCTTHHHHHTTTTTTSSCCEEET
T ss_pred CcCCCcCHHHHHHHH---CcCHHHHHHHHHHHHHCCCEEEeC
Confidence 34455 888887776 899999999999999999997654
No 199
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=83.94 E-value=6.3 Score=31.50 Aligned_cols=25 Identities=8% Similarity=0.130 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 027236 119 EQIREKEAQLVKEVKEMENKLAKLR 143 (226)
Q Consensus 119 ~el~~~i~~L~~e~~~l~~kL~~l~ 143 (226)
..|...+..|...+..+..+|..|.
T Consensus 91 ~~Lq~el~~l~~~~~~l~~~ireLE 115 (189)
T 2v71_A 91 SVLEDDLSQTRAIKEQLHKYVRELE 115 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555553
No 200
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=83.72 E-value=1.5 Score=36.45 Aligned_cols=58 Identities=21% Similarity=0.293 Sum_probs=46.6
Q ss_pred HHHHHHHHHHhcC-CCCcHHHHHHHHhcccccHHHHHHHHHHHHHcCCcceeecC--ceeEEEe
Q 027236 8 TEAIVLNYVNEQN-RPLNSQNVADALQKYNLKKAGIQKALDSLADNGKISFKEYG--KQKIYIA 68 (226)
Q Consensus 8 a~~~Il~y~~~~n-rPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~K~~G--K~kiY~~ 68 (226)
.+-.||.++.... .|-+..+|...+ ++++++|..+++.|...|+|.-..-. +=.++..
T Consensus 159 ~q~~vL~~L~~~~~~~~t~~eLa~~l---~i~~~tvt~~v~rLe~~GlV~R~~~~~DrR~~~i~ 219 (250)
T 1p4x_A 159 VEFTILAIITSQNKNIVLLKDLIETI---HHKYPQTVRALNNLKKQGYLIKERSTEDERKILIH 219 (250)
T ss_dssp HHHHHHHHHHTTTTCCEEHHHHHHHS---SSCHHHHHHHHHHHHHHTSSEEEECSSSTTCEEEE
T ss_pred HHHHHHHHHHhCCCCCcCHHHHHHHH---CCChhhHHHHHHHHHHCCCEEeeCCCCCCCeEEEE
Confidence 4567899998765 469999998877 79999999999999999999987653 2344544
No 201
>3kn1_A Golgi phosphoprotein 3; beta hairpin, phosphoinositide binding domain, cell membrane, cytoplasm, endosome, golgi apparatus, membrane, mitochondrion; HET: MSE; 2.90A {Homo sapiens}
Probab=83.48 E-value=6 Score=32.96 Aligned_cols=77 Identities=16% Similarity=0.193 Sum_probs=53.6
Q ss_pred CcchHHHHHHHHHHhcCCCCcHHHHHHHHhcc-------ccc-HHHHHHHHHHHHHcCCcceeecCceeEEEeecCCCCC
Q 027236 4 KSDNTEAIVLNYVNEQNRPLNSQNVADALQKY-------NLK-KAGIQKALDSLADNGKISFKEYGKQKIYIARQDQFDI 75 (226)
Q Consensus 4 kg~ea~~~Il~y~~~~nrPys~~di~~~l~~~-------~v~-K~~v~k~L~~Lv~~g~i~~K~~GK~kiY~~~Q~~~~~ 75 (226)
-|+---+.+++.|..+.+|.++++...-+++. ++. +..-..++++|++.|.|.... +++....-..+|.
T Consensus 79 tgD~lLd~aL~~i~~~~~p~~v~~Wi~~l~~~twn~~~~~~ql~~vre~v~~~Lv~~GvLr~e~---~~~llf~~~~~p~ 155 (249)
T 3kn1_A 79 TGDVLLDEALKHVKETQPPETVQNWIELLSGETWNPLKLHYQLRNVRERLAKNLVEKGVLTTEK---QNFLLFDMTTHPL 155 (249)
T ss_dssp CSCHHHHHHHHHHHHSCSCCBHHHHHHHHHTCCCCHHHHTTCCCCHHHHHHHHHHHTTSBCCEE---EEETTEEEEECCB
T ss_pred CCCHHHHHHHHHHHhcCCCCCHHHHHHHhccccccccchhhhhhhHHHHHHHHHHHCCeeEecc---cceeecCCcccCC
Confidence 35667788999999988899999988877631 112 566779999999999999885 4443223333555
Q ss_pred CCHHHHHH
Q 027236 76 PNSEELNQ 83 (226)
Q Consensus 76 ~~~ee~~~ 83 (226)
.++..-..
T Consensus 156 ~D~~~~~~ 163 (249)
T 3kn1_A 156 TNNNIKQR 163 (249)
T ss_dssp CCHHHHHH
T ss_pred CCchHHHH
Confidence 55554433
No 202
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=83.24 E-value=7.8 Score=28.80 Aligned_cols=21 Identities=24% Similarity=0.490 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 027236 92 QEQLEEQRKAISKLEGEIRTL 112 (226)
Q Consensus 92 ~~~l~~l~~~~k~l~~el~~l 112 (226)
+.++.+++..+..|+.+|..+
T Consensus 37 k~Ei~elrr~iq~L~~el~~l 57 (131)
T 3tnu_A 37 KSEISELRRTMQNLEIELQSQ 57 (131)
T ss_dssp ----CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444433
No 203
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=83.21 E-value=1.2 Score=32.92 Aligned_cols=33 Identities=15% Similarity=0.102 Sum_probs=29.2
Q ss_pred cHHHHHHHHhcccccHHHHHHHHHHHHHcCCcceee
Q 027236 24 NSQNVADALQKYNLKKAGIQKALDSLADNGKISFKE 59 (226)
Q Consensus 24 s~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~K~ 59 (226)
|..++...+ ||+.+.|.++|..|..+|+|....
T Consensus 37 se~~La~~~---~vSr~tvr~Al~~L~~~Gli~~~~ 69 (126)
T 3by6_A 37 SVRETALQE---KINPNTVAKAYKELEAQKVIRTIP 69 (126)
T ss_dssp CHHHHHHHH---TCCHHHHHHHHHHHHHTTSEEEET
T ss_pred CHHHHHHHH---CcCHHHHHHHHHHHHHCCCEEEec
Confidence 877887777 899999999999999999997654
No 204
>1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55
Probab=83.19 E-value=2.3 Score=31.98 Aligned_cols=52 Identities=13% Similarity=0.230 Sum_probs=40.2
Q ss_pred HHHHHHHhcCCCCcHHHHHHHHhcccccHHHHHHHHHHHHHcCCcceeecCceeEEEe
Q 027236 11 IVLNYVNEQNRPLNSQNVADALQKYNLKKAGIQKALDSLADNGKISFKEYGKQKIYIA 68 (226)
Q Consensus 11 ~Il~y~~~~nrPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~K~~GK~kiY~~ 68 (226)
.+|-||-....+ ++.+|...+ +|+...+.++|..|+..|+|.+.. | .-=|..
T Consensus 13 ~~L~~La~~~~~-s~~~IA~~~---~i~~~~l~kIl~~L~~aGlv~s~r-G-~GGy~L 64 (145)
T 1xd7_A 13 HILSLISMDEKT-SSEIIADSV---NTNPVVVRRMISLLKKADILTSRA-G-VPGASL 64 (145)
T ss_dssp HHHHHHHTCSCC-CHHHHHHHH---TSCHHHHHHHHHHHHHTTSEECCS-S-SSSCEE
T ss_pred HHHHHHHhCCCC-CHHHHHHHH---CcCHHHHHHHHHHHHHCCceEeec-C-CCCcee
Confidence 456666654446 988888877 899999999999999999998876 4 333544
No 205
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=83.11 E-value=2.2 Score=33.44 Aligned_cols=57 Identities=11% Similarity=0.205 Sum_probs=43.2
Q ss_pred hHHHHHHHHHHhc--------------CCCCcHHHHHHHHhcccccHHHHHHHHHHHHHcCCcceeecCceeEEEe
Q 027236 7 NTEAIVLNYVNEQ--------------NRPLNSQNVADALQKYNLKKAGIQKALDSLADNGKISFKEYGKQKIYIA 68 (226)
Q Consensus 7 ea~~~Il~y~~~~--------------nrPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~K~~GK~kiY~~ 68 (226)
.++++|..||... .-|++-++|.+.+ |++..+|.++|..|.++|.|.....| .|...
T Consensus 138 ~~~~Rl~~~L~~l~~~~g~~~~~~~~~~~~~t~~~lA~~l---g~sr~tvsR~l~~l~~~g~I~~~~~~--~i~i~ 208 (220)
T 2fmy_A 138 DARLRLAEFLVQAAMDTGLKVPQGIKLELGLNTEEIALML---GTTRQTVSVLLNDFKKMGILERVNQR--TLLLK 208 (220)
T ss_dssp HHHHHHHHHHHHHHHHHCEEETTEEEEECSSCHHHHHHHH---TSCHHHHHHHHHHHHHTTSEEESSSS--EEEES
T ss_pred CHHHHHHHHHHHHHHHhCCCCCCcEEEeccCCHHHHHHHh---CCcHHHHHHHHHHHHHCCCEEEcCCC--EEEEc
Confidence 4566677776543 2488999999988 89999999999999999998653234 45544
No 206
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=82.92 E-value=2.2 Score=38.21 Aligned_cols=64 Identities=19% Similarity=0.249 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027236 78 SEELNQMKEENAKLQEQLEEQRKAISKLEGEIRTLQSNLTLEQIREKEAQLVKEVKEMENKLAKL 142 (226)
Q Consensus 78 ~ee~~~l~~~i~~l~~~l~~l~~~~k~l~~el~~l~~~~t~~el~~~i~~L~~e~~~l~~kL~~l 142 (226)
-+++..++.+..+++.++..++.+.+.+..++.. .+....++|.++..++..+++++++++..+
T Consensus 27 ~~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 90 (421)
T 1ses_A 27 LEALLALDREVQELKKRLQEVQTERNQVAKRVPK-APPEEKEALIARGKALGEEAKRLEEALREK 90 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS-SCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5778888999999999999999999999888876 222233455555555555555555544443
No 207
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=82.88 E-value=1.8 Score=38.81 Aligned_cols=64 Identities=20% Similarity=0.373 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-CH-------HHHHHHHHHHHHHHHHHHHHHHHh
Q 027236 79 EELNQMKEENAKLQEQLEEQRKAISKLEGEIRTLQSNL-TL-------EQIREKEAQLVKEVKEMENKLAKL 142 (226)
Q Consensus 79 ee~~~l~~~i~~l~~~l~~l~~~~k~l~~el~~l~~~~-t~-------~el~~~i~~L~~e~~~l~~kL~~l 142 (226)
+++..++.+..+++.++..++.+.+.+..++..+++.. .. .++.++|.+++.+..+++++|..+
T Consensus 30 ~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (425)
T 2dq3_A 30 DKVLELDKRRREIIKRLEALRSERNKLSKEIGKLKREGKDTTEIQNRVKELKEEIDRLEEELRKVEEELKNT 101 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGSSCSCTTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777888999999999999999999999998876542 22 455566666666666666666554
No 208
>4esf_A PADR-like transcriptional regulator; PADR family, DNA binding protein, HTH fold; 2.20A {Bacillus cereus}
Probab=82.80 E-value=9.8 Score=27.51 Aligned_cols=58 Identities=17% Similarity=0.274 Sum_probs=42.5
Q ss_pred HHHHHHHHHhcCCCCcHHHHHHHHhc---ccccHHHHHHHHHHHHHcCCcceeec----Cce-eEEEe
Q 027236 9 EAIVLNYVNEQNRPLNSQNVADALQK---YNLKKAGIQKALDSLADNGKISFKEY----GKQ-KIYIA 68 (226)
Q Consensus 9 ~~~Il~y~~~~nrPys~~di~~~l~~---~~v~K~~v~k~L~~Lv~~g~i~~K~~----GK~-kiY~~ 68 (226)
+-.||..+.. +|...-+|...+.. .+++-.++-.+|..|.++|+|..... |.. ++|..
T Consensus 13 ~~~IL~lL~~--~p~~Gyei~~~l~~~g~~~is~gtlY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y~L 78 (117)
T 4esf_A 13 EGCVLEIISR--RETYGYEITRHLNDLGFTEVVEGTVYTILVRLEKKKLVNIEKKPSDMGPPRKFYSL 78 (117)
T ss_dssp HHHHHHHHHH--SCBCHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHTTCEEEEEEC-----CEEEEEE
T ss_pred HHHHHHHHHc--CCCCHHHHHHHHHHcCCCCCCccHHHHHHHHHHHCCCEEEEeecCCCCCCceEEEE
Confidence 4568888874 67777777776643 26899999999999999999998853 444 55555
No 209
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=82.62 E-value=4.1 Score=32.57 Aligned_cols=57 Identities=19% Similarity=0.352 Sum_probs=44.2
Q ss_pred hHHHHHHHHHHhc--------------CCCCcHHHHHHHHhcccccHHHHHHHHHHHHHcCCcceeecCceeEEEee
Q 027236 7 NTEAIVLNYVNEQ--------------NRPLNSQNVADALQKYNLKKAGIQKALDSLADNGKISFKEYGKQKIYIAR 69 (226)
Q Consensus 7 ea~~~Il~y~~~~--------------nrPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~K~~GK~kiY~~~ 69 (226)
.++++|..||... .-|++-++|.+.+ |++..+|-++|..|.++|+|... ...|...+
T Consensus 164 ~~~~Rla~~L~~l~~~~g~~~~~~~~i~~~lt~~~lA~~l---G~sr~tvsR~l~~L~~~GlI~~~---~~~i~I~d 234 (243)
T 3la7_A 164 DMGSRLVSFLLILCRDFGVPCADGITIDLKLSHQAIAEAI---GSTRVTVTRLLGDLREKKMISIH---KKKITVHK 234 (243)
T ss_dssp SHHHHHHHHHHHHHHHHEEECSSSEEECSCCCHHHHHHHH---TCCHHHHHHHHHHHHHTTSEEEE---TTEEEECC
T ss_pred CHHHHHHHHHHHHHHHhCCCCCCCeEEeccCCHHHHHHHH---CCcHHHHHHHHHHHHHCCCEEEc---CCEEEECC
Confidence 4567777777652 2478999999988 89999999999999999999854 34555553
No 210
>1hw1_A FADR, fatty acid metabolism regulator protein; helix-turn-helix, helix bundle, transcription; 1.50A {Escherichia coli} SCOP: a.4.5.6 a.78.1.1 PDB: 1hw2_A 1e2x_A 1h9g_A* 1h9t_A
Probab=82.35 E-value=4 Score=32.84 Aligned_cols=52 Identities=12% Similarity=0.303 Sum_probs=38.3
Q ss_pred chHHHHHHHHHHhc----CCCC-cHHHHHHHHhcccccHHHHHHHHHHHHHcCCcceeec
Q 027236 6 DNTEAIVLNYVNEQ----NRPL-NSQNVADALQKYNLKKAGIQKALDSLADNGKISFKEY 60 (226)
Q Consensus 6 ~ea~~~Il~y~~~~----nrPy-s~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~K~~ 60 (226)
+...+.|.+.+... +.+. |-.++...+ ||+++.|-+||..|+.+|+|.....
T Consensus 10 ~~v~~~l~~~I~~g~l~pG~~LPsE~eLa~~~---gVSR~tVReAL~~L~~eGlv~~~~g 66 (239)
T 1hw1_A 10 GFAEEYIIESIWNNRFPPGTILPAERELSELI---GVTRTTLREVLQRLARDGWLTIQHG 66 (239)
T ss_dssp HHHHHHHHHHHHTTSSCTTSBCCCHHHHHHHH---TCCHHHHHHHHHHHHHTTSEEEETT
T ss_pred HHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHH---CCCHHHHHHHHHHHHHCCcEEEecC
Confidence 44555555555432 3345 777777766 8999999999999999999988754
No 211
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}
Probab=82.27 E-value=5.1 Score=29.11 Aligned_cols=54 Identities=13% Similarity=0.113 Sum_probs=42.7
Q ss_pred hHHHHHHHHHHhcCCCCcHHHHHHHHhcccccHHHHHHHHHHHHHcCCcceeecCceeEEEe
Q 027236 7 NTEAIVLNYVNEQNRPLNSQNVADALQKYNLKKAGIQKALDSLADNGKISFKEYGKQKIYIA 68 (226)
Q Consensus 7 ea~~~Il~y~~~~nrPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~K~~GK~kiY~~ 68 (226)
+..+.|+..|.. .|+++.|+...+ +++...+..+|..|+..|.|+--.-| +|+.
T Consensus 7 ~l~~~i~~~~~~--~p~~~~~la~~~---~~~~~~~~~~l~~l~~~G~l~~i~~~---~~~~ 60 (121)
T 2pjp_A 7 AIWQKAEPLFGD--EPWWVRDLAKET---GTDEQAMRLTLRQAAQQGIITAIVKD---RYYR 60 (121)
T ss_dssp HHHHHHGGGCSS--SCEEHHHHHHHT---TCCHHHHHHHHHHHHHTTSEEEEETT---EEEE
T ss_pred HHHHHHHHHHHh--CCCCHHHHHHHh---CCCHHHHHHHHHHHHHCCCEEEecCC---ceEC
Confidence 456677777743 799988887766 79999999999999999999886543 5554
No 212
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=81.87 E-value=2.7 Score=34.22 Aligned_cols=56 Identities=13% Similarity=0.162 Sum_probs=42.2
Q ss_pred hHHHHHHHHHHhcC-------------CCCcHHHHHHHHhcccccHHHHHHHHHHHHHcCCcceeecCceeEEEe
Q 027236 7 NTEAIVLNYVNEQN-------------RPLNSQNVADALQKYNLKKAGIQKALDSLADNGKISFKEYGKQKIYIA 68 (226)
Q Consensus 7 ea~~~Il~y~~~~n-------------rPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~K~~GK~kiY~~ 68 (226)
.++++|..||.... -|++-++|.+.+ |++..+|.++|..|.++|+|... ..+|+..
T Consensus 189 ~~~~Rla~~Ll~l~~~~~~~~~~~~~~l~lt~~~lA~~l---G~sr~tvsR~l~~L~~~GlI~~~---~~~i~I~ 257 (260)
T 3kcc_A 189 LVTGRIAQTLLNLAKQPDAMTHPDGMQIKITRQEIGQIV---GCSRETVGRILKMLEDQNLISAH---GKTIVVY 257 (260)
T ss_dssp CHHHHHHHHHHHHHTSTTCEEETTEEEEECCHHHHHHHH---TCCHHHHHHHHHHHHHTTSEEEC---SSEEEEC
T ss_pred CHHHHHHHHHHHHHHhcCCCCCCCceeecCCHHHHHHHh---CCCHHHHHHHHHHHHHCCCEEEc---CCEEEEE
Confidence 45677777765421 178889999888 89999999999999999999753 3345444
No 213
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=81.79 E-value=3 Score=32.72 Aligned_cols=49 Identities=10% Similarity=0.221 Sum_probs=40.4
Q ss_pred hHHHHHHHHHHhcC-------------CCCcHHHHHHHHhcccccHHHHHHHHHHHHHcCCccee
Q 027236 7 NTEAIVLNYVNEQN-------------RPLNSQNVADALQKYNLKKAGIQKALDSLADNGKISFK 58 (226)
Q Consensus 7 ea~~~Il~y~~~~n-------------rPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~K 58 (226)
.++++|..||.... -|++-++|.+.+ |++..+|.++|..|.++|+|...
T Consensus 159 ~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~lt~~~lA~~l---g~sr~tvsR~l~~L~~~g~I~~~ 220 (230)
T 3iwz_A 159 DVTDRIVRTLHDLSKEPEAMSHPQGTQLRVSRQELARLV---GCSREMAGRVLKKLQADGLLHAR 220 (230)
T ss_dssp CHHHHHHHHHHHHTTSTTCEEETTEEEEECCHHHHHHHH---TCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CHHHHHHHHHHHHHHhhCCCCCCCceecCCCHHHHHHHh---CCcHHHHHHHHHHHHHCCCEEEC
Confidence 46778888887532 257888998888 89999999999999999999753
No 214
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=81.70 E-value=3.8 Score=32.01 Aligned_cols=61 Identities=23% Similarity=0.404 Sum_probs=45.4
Q ss_pred hHHHHHHHHHHh-c----------CCCCcHHHHHHHHhcccccHHHHHHHHHHHHHcCCcceeecCceeEEEeecCCC
Q 027236 7 NTEAIVLNYVNE-Q----------NRPLNSQNVADALQKYNLKKAGIQKALDSLADNGKISFKEYGKQKIYIARQDQF 73 (226)
Q Consensus 7 ea~~~Il~y~~~-~----------nrPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~K~~GK~kiY~~~Q~~~ 73 (226)
.++++|..||.. . .-|++-++|.+.+ |++..+|-++|..|.++|+|... ...|...+-+.+
T Consensus 152 ~~~~Rl~~~L~~~~~~~~~~~~~~~~~~t~~~lA~~l---g~sr~tvsR~l~~l~~~g~I~~~---~~~i~i~d~~~L 223 (227)
T 3dkw_A 152 NATHRVVRYLLTLAAHAPGENCRVEIPVAKQLVAGHL---SIQPETFSRIMHRLGDEGIIHLD---GREISILDRERL 223 (227)
T ss_dssp HHHHHHHHHHHHHHCSSSSSCCCCCCCSCTHHHHHHT---TSCHHHHHHHHHHHHHHTSEEES---SSCEEESCSTTT
T ss_pred CHHHHHHHHHHHhhhhcCCCCeEEEecCCHHHHHHHh---CCCHHHHHHHHHHHHHCCcEEec---CCEEEEeCHHHH
Confidence 456778887754 2 2367888998877 89999999999999999999653 345666654433
No 215
>3eet_A Putative GNTR-family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.97A {Streptomyces avermitilis}
Probab=81.55 E-value=4.4 Score=33.86 Aligned_cols=33 Identities=9% Similarity=0.148 Sum_probs=28.5
Q ss_pred cHHHHHHHHhcccccHHHHHHHHHHHHHcCCcceee
Q 027236 24 NSQNVADALQKYNLKKAGIQKALDSLADNGKISFKE 59 (226)
Q Consensus 24 s~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~K~ 59 (226)
|-.++...+ ||++++|.+||+.|+++|+|....
T Consensus 55 se~~La~~~---~vSr~tvr~Al~~L~~~G~i~~~~ 87 (272)
T 3eet_A 55 SQARIREEY---GVSDTVALEARKVLMAEGLVEGRS 87 (272)
T ss_dssp CHHHHHHHH---TCCHHHHHHHHHHHHHTTSEEECC
T ss_pred CHHHHHHHH---CCCHHHHHHHHHHHHHCCCEEEec
Confidence 777777766 899999999999999999987654
No 216
>2co5_A Viral protein F93; viral protein-winged helix complex, winged helix, DNA-bindin WHTH, disulfide bond, STIV; 2.2A {Sulfolobus turreted icosahedral virus} SCOP: a.4.5.48
Probab=81.44 E-value=10 Score=26.77 Aligned_cols=59 Identities=17% Similarity=0.240 Sum_probs=45.2
Q ss_pred HHHHHHHHHhcCCCCcHHHHHHHHhc---ccccHHHHHHHHHHHHHcCCcceeecCc-eeEEEe
Q 027236 9 EAIVLNYVNEQNRPLNSQNVADALQK---YNLKKAGIQKALDSLADNGKISFKEYGK-QKIYIA 68 (226)
Q Consensus 9 ~~~Il~y~~~~nrPys~~di~~~l~~---~~v~K~~v~k~L~~Lv~~g~i~~K~~GK-~kiY~~ 68 (226)
.-.||.++.....|+.-.++...+.. ..++-.++--+|..|.++|+|.+.. |. .++|-.
T Consensus 11 ~~~IL~lL~~~~~~~~g~~i~~ei~~~~~~~is~GtlYp~L~rLe~~GlI~~~~-~~~rk~Y~i 73 (99)
T 2co5_A 11 YYIILKVLVINGSRLEKKRLRSEILKRFDIDISDGVLYPLIDSLIDDKILREEE-APDGKVLFL 73 (99)
T ss_dssp HHHHHHHHHHTTTEEEGGGHHHHHHHHHCCBCCHHHHHHHHHHHHHTTSEEEEC-CTTSCEEEE
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHCCCEEEee-CCCcEEEEE
Confidence 34588888877788876566555443 2588999999999999999999988 55 466666
No 217
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=81.21 E-value=21 Score=29.30 Aligned_cols=59 Identities=14% Similarity=0.281 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027236 84 MKEENAKLQEQLEEQRKAISKLEGEIRTLQSNLTLEQIREKEAQLVKEVKEMENKLAKL 142 (226)
Q Consensus 84 l~~~i~~l~~~l~~l~~~~k~l~~el~~l~~~~t~~el~~~i~~L~~e~~~l~~kL~~l 142 (226)
++.++..+..++..+...++..+..+...++.-.-..|..+|..++.++..++..+..+
T Consensus 58 ~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~~~kE~~aL~kEie~~~~~i~~lE~eile~ 116 (256)
T 3na7_A 58 LKLQVSKNEQTLQDTNAKIASIQKKMSEIKSERELRSLNIEEDIAKERSNQANREIENL 116 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444333322333556666666666666666655444
No 218
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=80.96 E-value=8.3 Score=27.99 Aligned_cols=56 Identities=18% Similarity=0.217 Sum_probs=37.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHH
Q 027236 77 NSEELNQMKEENAKLQEQLEEQRKAISKLEGEIRTLQSNLTLEQIREKEAQLVKEVKEMENK 138 (226)
Q Consensus 77 ~~ee~~~l~~~i~~l~~~l~~l~~~~k~l~~el~~l~~~~t~~el~~~i~~L~~e~~~l~~k 138 (226)
+..+++.+...+....+.+.....++..++.++...... ...|.-|++++....+.
T Consensus 22 ~~~ei~~L~~~L~~AEeaL~~Kq~~idelk~ei~q~~~~------lE~I~vLkaQv~IY~~D 77 (110)
T 2v4h_A 22 ASMQLEDLRQQLQQAEEALVAKQELIDKLKEEAEQHKIV------METVPVLKAQADIYKAD 77 (110)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HTHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHH
Confidence 445777888888888888888888888888877775433 23445555555444443
No 219
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=80.88 E-value=3.4 Score=31.55 Aligned_cols=48 Identities=17% Similarity=0.337 Sum_probs=40.3
Q ss_pred chHHHHHHHHHHhcCCCCcHHHHHHHHhcccccHHHHHHHHHHHHHcCCcce
Q 027236 6 DNTEAIVLNYVNEQNRPLNSQNVADALQKYNLKKAGIQKALDSLADNGKISF 57 (226)
Q Consensus 6 ~ea~~~Il~y~~~~nrPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~ 57 (226)
|+....|+..+.. |-|-|..+|...+ |++.++|..-|+.|.+.|.|..
T Consensus 2 D~~d~~il~~L~~-~~~~s~~~la~~l---g~s~~tv~~rl~~L~~~g~i~~ 49 (162)
T 3i4p_A 2 DRLDRKILRILQE-DSTLAVADLAKKV---GLSTTPCWRRIQKMEEDGVIRR 49 (162)
T ss_dssp CHHHHHHHHHHTT-CSCSCHHHHHHHH---TCCHHHHHHHHHHHHHTTSSCC
T ss_pred CHHHHHHHHHHHH-CCCCCHHHHHHHH---CcCHHHHHHHHHHHHHCCCeee
Confidence 3455678888875 5667989999888 8999999999999999999873
No 220
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=80.61 E-value=3.6 Score=31.63 Aligned_cols=49 Identities=14% Similarity=0.238 Sum_probs=38.7
Q ss_pred hHHHHHHHHHHhcC-------------CCCcHHHHHHHHhcccccHHHHHHHHHHHHHcCCccee
Q 027236 7 NTEAIVLNYVNEQN-------------RPLNSQNVADALQKYNLKKAGIQKALDSLADNGKISFK 58 (226)
Q Consensus 7 ea~~~Il~y~~~~n-------------rPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~K 58 (226)
.+.++|..||.... -|++-++|.+.+ |++..+|-++|..|.++|+|...
T Consensus 136 ~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~lA~~l---g~sr~tvsR~l~~l~~~g~I~~~ 197 (207)
T 2oz6_A 136 DVTGRVARTLLDLCQQPDAMTHPDGMQIKITRQEIGRIV---GCSREMVGRVLKSLEEQGLVHVK 197 (207)
T ss_dssp CHHHHHHHHHHHHTTSTTCEEETTEEEEECCHHHHHHHH---TSCHHHHHHHHHHHHHTTSEEEE
T ss_pred CHHHHHHHHHHHHHHhcCCCCCCCceecccCHHHHHHHh---CCCHHHHHHHHHHHHHCCCEEec
Confidence 45667777765321 267888998888 89999999999999999999654
No 221
>2p8t_A Hypothetical protein PH0730; pyrococcus horikoshii OT3, STR genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.72 d.74.4.2
Probab=80.54 E-value=3.8 Score=33.05 Aligned_cols=37 Identities=22% Similarity=0.407 Sum_probs=33.6
Q ss_pred CCCCcHHHHHHHHhcccccHHHHHHHHHHHHHcCCcceee
Q 027236 20 NRPLNSQNVADALQKYNLKKAGIQKALDSLADNGKISFKE 59 (226)
Q Consensus 20 nrPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~K~ 59 (226)
+.|-+..+|...| +|+.++|..+|+.|.++|+|....
T Consensus 28 ~~~V~~~~LA~~L---gvS~~SV~~~lkkL~e~GLV~~~~ 64 (200)
T 2p8t_A 28 KEPLGRKQISERL---ELGEGSVRTLLRKLSHLDIIRSKQ 64 (200)
T ss_dssp TSCBCHHHHHHHH---TCCHHHHHHHHHHHHHTTSEEEC-
T ss_pred cCCccHHHHHHHh---CCCHHHHHHHHHHHHHCCCEEEeC
Confidence 5899999999988 799999999999999999998877
No 222
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=80.49 E-value=5.1 Score=31.70 Aligned_cols=58 Identities=21% Similarity=0.338 Sum_probs=45.5
Q ss_pred chHHHHHHHHHHhcC--------CCCcHHHHHHHHhcccccHHHHHHHHHHHHHcCCcceeecCceeEEEee
Q 027236 6 DNTEAIVLNYVNEQN--------RPLNSQNVADALQKYNLKKAGIQKALDSLADNGKISFKEYGKQKIYIAR 69 (226)
Q Consensus 6 ~ea~~~Il~y~~~~n--------rPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~K~~GK~kiY~~~ 69 (226)
..++++|..||.... -|++-++|.+.+ |++..+|.++|..|.++|+|... .| .|...+
T Consensus 162 ~~~~~Rl~~~L~~l~~~~~~~~~~~~t~~~lA~~l---G~sr~tvsR~l~~l~~~glI~~~-~~--~i~I~d 227 (232)
T 1zyb_A 162 LDLKSKIIRFFLSHCEKPQGEKTFKVKMDDLARCL---DDTRLNISKTLNELQDNGLIELH-RK--EILIPD 227 (232)
T ss_dssp CSHHHHHHHHHHTTCSSSSSCEEEECCHHHHHHHH---TSCHHHHHHHHHHHHHTTSCEEE-TT--EEEESC
T ss_pred cCHHHHHHHHHHHHHhhcCCeEEecCCHHHHHHHh---CCChhHHHHHHHHHHHCCCEEec-CC--EEEEeC
Confidence 357788999988632 257899999888 89999999999999999999754 33 455543
No 223
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=80.41 E-value=3.5 Score=32.58 Aligned_cols=56 Identities=18% Similarity=0.303 Sum_probs=42.9
Q ss_pred chHHHHHHHHHHhcC----------CCCcHHHHHHHHhcccccHHHHHHHHHHHHHcCCcceeecCceeEEEe
Q 027236 6 DNTEAIVLNYVNEQN----------RPLNSQNVADALQKYNLKKAGIQKALDSLADNGKISFKEYGKQKIYIA 68 (226)
Q Consensus 6 ~ea~~~Il~y~~~~n----------rPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~K~~GK~kiY~~ 68 (226)
..+.++|..||.... -|++-++|.+.+ |++..+|-++|..|.++| |. ++...|...
T Consensus 152 ~~~~~Rl~~~L~~~~~~~~~~~~~~l~~t~~~iA~~l---g~sr~tvsR~l~~L~~~g-i~---~~~~~i~I~ 217 (237)
T 3fx3_A 152 QTGAQRVAEFLLELCDCDTGACEVTLPYDKMLIAGRL---GMKPESLSRAFSRLKAAG-VT---VKRNHAEIE 217 (237)
T ss_dssp CCHHHHHHHHHHHHCCC-----EEECCSCTHHHHHHT---TCCHHHHHHHHHHHGGGT-EE---CCTTEEEES
T ss_pred CCHHHHHHHHHHHHhhhcCCCeEEEecCCHHHHHHHh---CCCHHHHHHHHHHHHHCC-eE---eeCCEEEEc
Confidence 356788888888742 377888888877 899999999999999999 52 233456555
No 224
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=80.18 E-value=14 Score=26.37 Aligned_cols=36 Identities=8% Similarity=0.151 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 027236 81 LNQMKEENAKLQEQLEEQRKAISKLEGEIRTLQSNL 116 (226)
Q Consensus 81 ~~~l~~~i~~l~~~l~~l~~~~k~l~~el~~l~~~~ 116 (226)
+..+..++..+..++..++.++..+..-+..|...+
T Consensus 15 ~~~l~~~~~~l~~q~~~l~~~~~e~~~~~~eL~~l~ 50 (117)
T 2zqm_A 15 LESYQQQLQLVVQQKQKVQLELTEAKKALDEIESLP 50 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 344455555555566666666666655555555543
No 225
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=80.01 E-value=8.8 Score=35.08 Aligned_cols=37 Identities=11% Similarity=0.091 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027236 78 SEELNQMKEENAKLQEQLEEQRKAISKLEGEIRTLQS 114 (226)
Q Consensus 78 ~ee~~~l~~~i~~l~~~l~~l~~~~k~l~~el~~l~~ 114 (226)
-+++..++.+..+++.++..++.+.+.+..++..+.+
T Consensus 36 ~d~~~~ld~~~r~~~~~~~~l~~~rN~~sk~i~~~~~ 72 (484)
T 3lss_A 36 VDAIIEADKKWRRTQFLTEASKKLINICSKAVGAKKK 72 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4677888899999999999999999999988877665
No 226
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=79.99 E-value=5.4 Score=30.69 Aligned_cols=56 Identities=18% Similarity=0.159 Sum_probs=43.2
Q ss_pred hHHHHHHHHHHhcC-------------CCCcHHHHHHHHhcccccHHHHHHHHHHHHHcCCcceeecCceeEEEe
Q 027236 7 NTEAIVLNYVNEQN-------------RPLNSQNVADALQKYNLKKAGIQKALDSLADNGKISFKEYGKQKIYIA 68 (226)
Q Consensus 7 ea~~~Il~y~~~~n-------------rPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~K~~GK~kiY~~ 68 (226)
.++++|..||.... -|++-++|.+.+ |++..+|.++|..|.++|+|... ...|+..
T Consensus 118 ~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~lA~~l---g~sr~tvsR~l~~L~~~g~I~~~---~~~i~i~ 186 (202)
T 2zcw_A 118 RLKNRMAAALLELSETPLAHEEEGKVVLKATHDELAAAV---GSVRETVTKVIGELAREGYIRSG---YGKIQLL 186 (202)
T ss_dssp CHHHHHHHHHHHHTTSTTEEEETTEEEEECCHHHHHHHH---TCCHHHHHHHHHHHHHTTSEEEE---TTEEEES
T ss_pred CHHHHHHHHHHHHHHhcCCCCCCcEEccCCCHHHHHHHh---CCCHHHHHHHHHHHHHCCCEEeC---CCEEEEe
Confidence 46677888877632 357888998888 89999999999999999999742 3345554
No 227
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=79.93 E-value=12 Score=25.61 Aligned_cols=45 Identities=16% Similarity=0.409 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 027236 91 LQEQLEEQRKAISKLEGEIRTLQSNLTLEQIREKEAQLVKEVKEMENKLAKLRG 144 (226)
Q Consensus 91 l~~~l~~l~~~~k~l~~el~~l~~~~t~~el~~~i~~L~~e~~~l~~kL~~l~~ 144 (226)
+++++...+.....+..+|. +.......|..++..++++++.|+.
T Consensus 29 i~EELs~vr~~ni~~eskL~---------eae~rn~eL~~e~~~l~~~~eelq~ 73 (81)
T 1wt6_A 29 LSREMEAIRTDNQNFASQLR---------EAEARNRDLEAHVRQLQERMELLQA 73 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 44455555555555555444 4445566666777777777777765
No 228
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=79.59 E-value=13 Score=28.57 Aligned_cols=62 Identities=15% Similarity=0.239 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----CCHHHHHHHHHHHHHHHHHHHHHHHH
Q 027236 80 ELNQMKEENAKLQEQLEEQRKAISKLEGEIRTLQSN-----LTLEQIREKEAQLVKEVKEMENKLAK 141 (226)
Q Consensus 80 e~~~l~~~i~~l~~~l~~l~~~~k~l~~el~~l~~~-----~t~~el~~~i~~L~~e~~~l~~kL~~ 141 (226)
.+..+..++..++.++..++.++..-...+..++.. .....+...+..|++|+..|=.++-.
T Consensus 69 ~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RWM~ 135 (152)
T 3a7p_A 69 TLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVARWLK 135 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666666666666666665544444333333332 22356667777777777777777633
No 229
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=79.38 E-value=11 Score=25.02 Aligned_cols=57 Identities=21% Similarity=0.274 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 027236 85 KEENAKLQEQLEEQRKAISKLEGEIRTLQSNLTLEQIREKEAQLVKEVKEMENKLAKLR 143 (226)
Q Consensus 85 ~~~i~~l~~~l~~l~~~~k~l~~el~~l~~~~t~~el~~~i~~L~~e~~~l~~kL~~l~ 143 (226)
...+..|++++..-..++..|++.++--.+ ..+-|-++|-.+.-|+.-|+.+|..++
T Consensus 17 ~~~l~~Lr~eL~~Ke~eI~~L~e~i~lk~k--d~ErLNDEiislNIENNlL~~rl~~l~ 73 (75)
T 3a7o_A 17 LNTLAILQKELKSKEQEIRRLKEVIALKNK--NTERLNDELISGTIENNVLQQKLSDLK 73 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--cHHHhhHHHHHhHHHHHHHHHHHHHHh
Confidence 348888999999888898888887765432 346677788888888888998887664
No 230
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=79.08 E-value=3.6 Score=32.36 Aligned_cols=42 Identities=12% Similarity=0.299 Sum_probs=34.7
Q ss_pred CCCcHHHHHHHHhcccccHHHHHHHHHHHHHcCCcceeecCceeEEEe
Q 027236 21 RPLNSQNVADALQKYNLKKAGIQKALDSLADNGKISFKEYGKQKIYIA 68 (226)
Q Consensus 21 rPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~K~~GK~kiY~~ 68 (226)
-|++-++|.+.+ |++..+|-++|..|.++|+|... ...|...
T Consensus 174 ~~~t~~~iA~~l---g~sr~tvsR~l~~L~~~g~I~~~---~~~i~i~ 215 (231)
T 3e97_A 174 LPLGTQDIMART---SSSRETVSRVLKRLEAHNILEVS---PRSVTLL 215 (231)
T ss_dssp ECCCHHHHHHHH---TCCHHHHHHHHHHHHHTTSEEEC---SSCEEES
T ss_pred cCCCHHHHHHHh---CCcHHHHHHHHHHHHHCCcEEec---CCEEEEe
Confidence 378999999988 89999999999999999999753 3355554
No 231
>2pi2_A Replication protein A 32 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2z6k_A 1dpu_A 1z1d_A
Probab=78.94 E-value=0.4 Score=40.46 Aligned_cols=48 Identities=27% Similarity=0.443 Sum_probs=0.0
Q ss_pred chHHHHHHHHHHhcC--CCCcHHHHHHHHhcccccHHHHHHHHHHHHHcCCc
Q 027236 6 DNTEAIVLNYVNEQN--RPLNSQNVADALQKYNLKKAGIQKALDSLADNGKI 55 (226)
Q Consensus 6 ~ea~~~Il~y~~~~n--rPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i 55 (226)
.....+||+|++... .--+..+|...|+ +++...|.++|+.|+++|.|
T Consensus 206 ~~~~~~Vl~~i~~~~~~~Gi~~~~I~~~l~--~~~~~~v~~al~~L~~eG~I 255 (270)
T 2pi2_A 206 TVAQNQVLNLIKACPRPEGLNFQDLKNQLK--HMSVSSIKQAVDFLSNEGHI 255 (270)
T ss_dssp ----------------------------------------------------
T ss_pred CHHHHHHHHHHHhCCCccCCCHHHHHHHhc--CCCHHHHHHHHHHHHhCCEE
Confidence 456788999999754 4566667777774 58899999999999999987
No 232
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=78.80 E-value=4.6 Score=31.62 Aligned_cols=48 Identities=17% Similarity=0.290 Sum_probs=40.2
Q ss_pred hHHHHHHHHHHhcC--------------CCCcHHHHHHHHhcccccHHHHHHHHHHHHHcCCcce
Q 027236 7 NTEAIVLNYVNEQN--------------RPLNSQNVADALQKYNLKKAGIQKALDSLADNGKISF 57 (226)
Q Consensus 7 ea~~~Il~y~~~~n--------------rPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~ 57 (226)
.+.++|..||.... -|++-++|.+.+ |++..+|.++|..|.++|+|..
T Consensus 134 ~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~~t~~~lA~~l---G~sr~tvsR~l~~L~~~g~I~~ 195 (222)
T 1ft9_A 134 DIKQRIAGFFIDHANTTGRQTQGGVIVSVDFTVEEIANLI---GSSRQTTSTALNSLIKEGYISR 195 (222)
T ss_dssp HHHHHHHHHHHHTCBCCCSCC--CCCCEECCCHHHHHHHH---CSCHHHHHHHHHHHHHTTSSEE
T ss_pred CHHHHHHHHHHHHHHHhCCCCCCcEEEeccCCHHHHHHHh---CCcHHHHHHHHHHHHHCCcEEE
Confidence 46778888887643 258889998888 8999999999999999999865
No 233
>1fx7_A Iron-dependent repressor IDER; DTXR, iron-dependent regulator, signaling protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.4.5.24 a.76.1.1 b.34.1.2 PDB: 1u8r_A
Probab=78.78 E-value=23 Score=28.29 Aligned_cols=50 Identities=10% Similarity=0.250 Sum_probs=37.5
Q ss_pred HHHHHHHHHHhcC-CCCcH--HHHHHHHhcccccHHHHHHHHHHHHHcCCcceeec
Q 027236 8 TEAIVLNYVNEQN-RPLNS--QNVADALQKYNLKKAGIQKALDSLADNGKISFKEY 60 (226)
Q Consensus 8 a~~~Il~y~~~~n-rPys~--~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~K~~ 60 (226)
....+|.++..-. .+.+. .+|...+ ++++++|..+|+.|.++|+|....+
T Consensus 7 ~~e~~L~~L~~l~~~~~~~~~~~La~~l---~vs~~tvs~~l~~Le~~GlV~r~~~ 59 (230)
T 1fx7_A 7 TTEMYLRTIYDLEEEGVTPLRARIAERL---DQSGPTVSQTVSRMERDGLLRVAGD 59 (230)
T ss_dssp HHHHHHHHHHHHHHHTSCCCHHHHHHHH---TCCHHHHHHHHHHHHHTTSEEECTT
T ss_pred HHHHHHHHHHHHhhcCCCCcHHHHHHHH---CcCHHHHHHHHHHHHHCCCEEEeCC
Confidence 3444555444321 24555 8898877 7999999999999999999999876
No 234
>3f8m_A GNTR-family protein transcriptional regulator; PHNF, HUTC, winged helix-TUR UTRA, DNA-binding, transcription regulation; 1.80A {Mycobacterium smegmatis}
Probab=78.71 E-value=3.4 Score=33.96 Aligned_cols=35 Identities=17% Similarity=0.446 Sum_probs=29.5
Q ss_pred cHHHHHHHHhcccccHHHHHHHHHHHHHcCCcceeecCce
Q 027236 24 NSQNVADALQKYNLKKAGIQKALDSLADNGKISFKEYGKQ 63 (226)
Q Consensus 24 s~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~K~~GK~ 63 (226)
|-.++...+ ||++++|.+||+.|+++|+|.. =|+.
T Consensus 38 se~~La~~~---~vSr~tvr~Al~~L~~~G~i~~--~g~G 72 (248)
T 3f8m_A 38 AEREIAEQF---EVARETVRQALRELLIDGRVER--RGRT 72 (248)
T ss_dssp CHHHHHHHT---TCCHHHHHHHHHHHHHTTSEEE--ETTE
T ss_pred CHHHHHHHH---CcCHHHHHHHHHHHHHCCCEEe--CCCE
Confidence 666666655 8999999999999999999998 5655
No 235
>1d8j_A General transcription factor TFIIE-beta; winged helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.5.18 PDB: 1d8k_A
Probab=78.38 E-value=7.6 Score=26.69 Aligned_cols=52 Identities=25% Similarity=0.355 Sum_probs=42.3
Q ss_pred HHHHHHHHHh-----cCCCCcHHHHHHHHhcccccHHHHHHH-HHHHHHcCCcceeecC
Q 027236 9 EAIVLNYVNE-----QNRPLNSQNVADALQKYNLKKAGIQKA-LDSLADNGKISFKEYG 61 (226)
Q Consensus 9 ~~~Il~y~~~-----~nrPys~~di~~~l~~~~v~K~~v~k~-L~~Lv~~g~i~~K~~G 61 (226)
-..|.+||+. ..-|.|+.||.+.+....++...-+-. -+.|...-+|... =|
T Consensus 13 lakiV~~mK~rh~~g~~~PltL~EILde~~~~d~~~~~k~wL~~eaL~~npkI~~~-dg 70 (81)
T 1d8j_A 13 LAKIVNYMKTRHQRGDTHPLTLDEILDETQHLDIGLKQKQWLMTEALVNNPKIEVI-DG 70 (81)
T ss_dssp HHHHHHHHHHHHHHTCCSCBCHHHHHHHHTCSSCCHHHHHHHHTTHHHHCTTEEEC-SS
T ss_pred HHHHHHHHHHhhccCCCCCccHHHHHHHHhccCCCHHHHHHHHHHHhhcCCceEEe-CC
Confidence 4679999998 899999999999987667777666665 5778888888876 55
No 236
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=78.20 E-value=12 Score=29.31 Aligned_cols=56 Identities=20% Similarity=0.322 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-----CHHHHHHHHHHHHHHHHHHHHHHHH
Q 027236 86 EENAKLQEQLEEQRKAISKLEGEIRTLQSNL-----TLEQIREKEAQLVKEVKEMENKLAK 141 (226)
Q Consensus 86 ~~i~~l~~~l~~l~~~~k~l~~el~~l~~~~-----t~~el~~~i~~L~~e~~~l~~kL~~ 141 (226)
..+..|......|.+++..|++.|..-+... ...+|...|..|..++..+..++..
T Consensus 55 ~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k 115 (168)
T 3o0z_A 55 ERNRILENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEK 115 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444333211 1133444444444444444444433
No 237
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=77.79 E-value=21 Score=27.46 Aligned_cols=21 Identities=19% Similarity=0.254 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 027236 158 EEMFLEKLSQWRKRKRMLRDI 178 (226)
Q Consensus 158 ~~~~~~~~~~w~kRkri~~~i 178 (226)
+...........+...++..+
T Consensus 114 e~r~~~L~~ql~e~~~~l~~l 134 (154)
T 2ocy_A 114 EILNKRLTEQLREKDTLLDTL 134 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444445555544343333
No 238
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=77.67 E-value=6.1 Score=21.57 Aligned_cols=22 Identities=27% Similarity=0.424 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 027236 90 KLQEQLEEQRKAISKLEGEIRT 111 (226)
Q Consensus 90 ~l~~~l~~l~~~~k~l~~el~~ 111 (226)
.|..++..++.++..|.=+++.
T Consensus 6 alkqeiaalkkeiaalkfeiaa 27 (33)
T 4dzn_A 6 ALKQEIAALKKEIAALKFEIAA 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444433
No 239
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=77.64 E-value=15 Score=25.85 Aligned_cols=65 Identities=17% Similarity=0.147 Sum_probs=43.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCC--CHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Q 027236 116 LTLEQIREKEAQLVKEVKEMENKLAKLRGGVTLV--KPEDRMAVEEMFLEKLSQWRK-RKRMLRDIWD 180 (226)
Q Consensus 116 ~t~~el~~~i~~L~~e~~~l~~kL~~l~~~~~~v--s~ee~~~~~~~~~~~~~~w~k-Rkri~~~i~~ 180 (226)
.+-++-...|.+.+..+.+..+=|.++.-....+ ++.....+...++.|...|.+ =++=++.+.+
T Consensus 27 ~~ge~Rk~~i~~ie~~ldEA~ell~qMelE~~~~~~p~~~R~~~~~klr~Yk~dl~~~lk~~lk~l~d 94 (97)
T 3onj_A 27 QPLSQRNTTLKHVEQQQDELFDLLDQMDVEVNNSIGDASERATYKAKLREWKKTIQSDIKRPLQSLVD 94 (97)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3446777777777777777777776664311112 467788888888888888888 6655565544
No 240
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=77.59 E-value=12 Score=27.34 Aligned_cols=58 Identities=10% Similarity=0.163 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcc--CCHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 027236 87 ENAKLQEQLEEQRKAISKLEGEIRTLQSN--LTLEQIREKEAQLVKEVKEMENKLAKLRG 144 (226)
Q Consensus 87 ~i~~l~~~l~~l~~~~k~l~~el~~l~~~--~t~~el~~~i~~L~~e~~~l~~kL~~l~~ 144 (226)
.+..|+..+..|..++-.+...+....+. -+...|...+.+|......+..+|..|.-
T Consensus 4 ~~rdL~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq 63 (111)
T 2v66_B 4 RNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQ 63 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555443 22356777777777777777777777653
No 241
>3l09_A Putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG, protein structure initiative transcription regulator; 2.81A {Jannaschia SP}
Probab=77.27 E-value=7.2 Score=32.78 Aligned_cols=61 Identities=10% Similarity=0.209 Sum_probs=52.4
Q ss_pred HHHHHHHHH----HhcCCCCcHHHHHHHHhcccccHHHHHHHHHHHHHcCCcceeecCceeEEEe
Q 027236 8 TEAIVLNYV----NEQNRPLNSQNVADALQKYNLKKAGIQKALDSLADNGKISFKEYGKQKIYIA 68 (226)
Q Consensus 8 a~~~Il~y~----~~~nrPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~K~~GK~kiY~~ 68 (226)
+...|+.+| .....+-++.++...+.-.||+-++|--+|--|+.+|.|.....|-..+|-.
T Consensus 24 a~Sli~tl~Gd~~~~~g~~i~~~~Li~l~~~~Gi~~~avR~Al~RL~~~G~l~~~~~Gr~~~Y~L 88 (266)
T 3l09_A 24 LWSVLVTCLGDVSRDGVIEVSGVALSSFVERMGLQPQAMRVALHRLKRDGWVESRRLGRVGFHRL 88 (266)
T ss_dssp HHHHHHHHHHHHHHTTCCCEEHHHHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEE
T ss_pred hhHHHHHHHHHHhccCCCcccHHHHHHHHHHcCCCchHHHHHHHHHHHCCCeeeeecCCcceEEE
Confidence 455666555 6677789999999988878999999999999999999999999998887766
No 242
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=77.08 E-value=3 Score=32.06 Aligned_cols=56 Identities=21% Similarity=0.351 Sum_probs=42.7
Q ss_pred hHHHHHHHHHHhc-------------CCCCcHHHHHHHHhcccccHHHHHHHHHHHHHcCCcceeecCceeEEEe
Q 027236 7 NTEAIVLNYVNEQ-------------NRPLNSQNVADALQKYNLKKAGIQKALDSLADNGKISFKEYGKQKIYIA 68 (226)
Q Consensus 7 ea~~~Il~y~~~~-------------nrPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~K~~GK~kiY~~ 68 (226)
.++++|..||... .-|++-++|.+.+ |++..+|.++|..|.++|+|... .| .|+..
T Consensus 111 ~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~lA~~l---g~sr~tvsR~l~~L~~~g~I~~~-~~--~i~i~ 179 (195)
T 3b02_A 111 ELRARIARYLLFLADTPLSARDRQGIYVTVSHEEIADAT---ASIRESVSKVLADLRREGLIATA-YR--RVYLL 179 (195)
T ss_dssp CHHHHHHHHHHHHTTSTTEEEETTEEEEECCHHHHHHTT---TSCHHHHHHHHHHHHHHTSEEEE-TT--EEEEC
T ss_pred CHHHHHHHHHHHHHHHcCCCCCCCeeeccCCHHHHHHHh---CCCHHHHHHHHHHHHHCCCEEec-CC--EEEEe
Confidence 4667788888662 1367888888877 89999999999999999999654 23 35544
No 243
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=76.77 E-value=17 Score=25.48 Aligned_cols=37 Identities=11% Similarity=0.232 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 027236 80 ELNQMKEENAKLQEQLEEQRKAISKLEGEIRTLQSNL 116 (226)
Q Consensus 80 e~~~l~~~i~~l~~~l~~l~~~~k~l~~el~~l~~~~ 116 (226)
.+..+..++..+..++..++.++..+..-+..|...+
T Consensus 9 ~f~~lq~~~~~l~~q~~~l~~~~~e~~~~~~EL~~l~ 45 (107)
T 1fxk_A 9 QFQQLQQQAQAISVQKQTVEMQINETQKALEELSRAA 45 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3556667777777777777777777776666665543
No 244
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=76.76 E-value=4.4 Score=31.75 Aligned_cols=53 Identities=23% Similarity=0.340 Sum_probs=44.2
Q ss_pred chHHHHHHHHHHhcCCCCcHHHHHHHHhcccccHHHHHHHHHHHHHcCCcceeec
Q 027236 6 DNTEAIVLNYVNEQNRPLNSQNVADALQKYNLKKAGIQKALDSLADNGKISFKEY 60 (226)
Q Consensus 6 ~ea~~~Il~y~~~~nrPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~K~~ 60 (226)
..|....+.||- .|++|-.+|..-|...|++-..|..+|+.|.+.|.|.-..|
T Consensus 18 ~~a~~~Al~~Ls--~r~~S~~EL~~KL~~kg~~~~~ie~vl~~L~~~g~ldD~rf 70 (177)
T 3e3v_A 18 SKGYNAALNYLS--YQLRTRKEVEDKLRSLDIHEDYISEIINKLIDLDLINDKNY 70 (177)
T ss_dssp HHHHHHHHHHHH--SSCCCHHHHHTTSGGGTCCHHHHHHHHHHHHHTTSSCHHHH
T ss_pred HHHHHHHHHHhc--cccccHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCHHHH
Confidence 456677777876 79999999999998889999999999999999887654333
No 245
>3c7j_A Transcriptional regulator, GNTR family; structural genomics, PSI-2, protein structure initiative, midwest center for STR genomics; HET: MSE; 2.10A {Pseudomonas syringae PV}
Probab=76.76 E-value=2.7 Score=34.26 Aligned_cols=42 Identities=14% Similarity=0.244 Sum_probs=34.3
Q ss_pred cCCCCcHHHHHHHHhcccccHHHHHHHHHHHHHcCCcceeecCce
Q 027236 19 QNRPLNSQNVADALQKYNLKKAGIQKALDSLADNGKISFKEYGKQ 63 (226)
Q Consensus 19 ~nrPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~K~~GK~ 63 (226)
.+.+.+..++...+ ||+.+.|-++|..|..+|+|.....|-.
T Consensus 46 pG~~L~e~~La~~l---gVSr~~VReAL~~L~~~Glv~~~~~~G~ 87 (237)
T 3c7j_A 46 SGTALRQQELATLF---GVSRMPVREALRQLEAQSLLRVETHKGA 87 (237)
T ss_dssp TTCBCCHHHHHHHH---TSCHHHHHHHHHHHHHTTSEEEETTTEE
T ss_pred CcCeeCHHHHHHHH---CCCHHHHHHHHHHHHHCCCEEEeCCCce
Confidence 34456877777776 8999999999999999999998876543
No 246
>3c18_A Nucleotidyltransferase-like protein; ZP_00538802.1, structur genomics, joint center for structural genomics, JCSG; 1.90A {Exiguobacterium sibiricum}
Probab=76.46 E-value=4.7 Score=34.36 Aligned_cols=62 Identities=11% Similarity=0.159 Sum_probs=45.7
Q ss_pred chHHHHHHHHHHhcCCCCcHHHHHHHHhcccccHHHHHHHHHHHHHcCCcceeec--CceeEEEe
Q 027236 6 DNTEAIVLNYVNEQNRPLNSQNVADALQKYNLKKAGIQKALDSLADNGKISFKEY--GKQKIYIA 68 (226)
Q Consensus 6 ~ea~~~Il~y~~~~nrPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~K~~--GK~kiY~~ 68 (226)
+....-+++||.++..|+|+.+|...-.= .-=.--+..+|+.|++.|+|..... +-+.||+.
T Consensus 221 ~~~~~~Ll~~m~ek~~~wS~~Ei~~~p~~-~~~~idle~iL~~Lv~k~lI~~~~~~tk~~~~~~~ 284 (290)
T 3c18_A 221 LSGGKYLFEVMRERDRPWTMHELMEESRL-TELKVDLGSLVDFFIRKGLIRISYQRTKGLGVELV 284 (290)
T ss_dssp HHHHHHHHHHHTTSSSCEEHHHHHHCGGG-GGGHHHHHHHHHHHHHTTSEEEEEEECTTSSEEEE
T ss_pred HHHHHHHHHHHHhcCCCCCHHHHhcCccc-ccccCCHHHHHHHHHHcCCeEEecccCCCCcEEEE
Confidence 34567799999999999999998653211 1224567889999999999998866 34456653
No 247
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=76.35 E-value=4.1 Score=31.56 Aligned_cols=56 Identities=13% Similarity=0.199 Sum_probs=43.4
Q ss_pred hHHHHHHHHHHh---c----CCCCcHHHHHHHHhcccccHHHHHHHHHHHHHcCCcceeecCceeEEEe
Q 027236 7 NTEAIVLNYVNE---Q----NRPLNSQNVADALQKYNLKKAGIQKALDSLADNGKISFKEYGKQKIYIA 68 (226)
Q Consensus 7 ea~~~Il~y~~~---~----nrPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~K~~GK~kiY~~ 68 (226)
.++++|..||.. . .-|++-++|.+.+ |++..+|-++|..|.++|.|... ...|+..
T Consensus 141 ~~~~Rl~~~L~~~~~~~~~~~~~~t~~~lA~~l---g~sr~tvsR~l~~l~~~g~I~~~---~~~i~i~ 203 (216)
T 4ev0_A 141 EARNRVAYALLKLLRQGLGPLFQIRHHELAALA---GTSRETVSRVLHALAEEGVVRLG---PGTVEVR 203 (216)
T ss_dssp HHHHHHHHHHHHHHHTTCCSEEECCHHHHHHHH---TSCHHHHHHHHHHHHHTTSEEEE---TTEEEES
T ss_pred CHHHHHHHHHHHHhhcCCccCCCCCHHHHHHHh---CCCHHHHHHHHHHHHHCCCEEec---CCEEEEe
Confidence 467788888863 1 2478999999988 89999999999999999999742 3345554
No 248
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=76.05 E-value=6.3 Score=29.14 Aligned_cols=15 Identities=20% Similarity=0.408 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHhh
Q 027236 129 VKEVKEMENKLAKLR 143 (226)
Q Consensus 129 ~~e~~~l~~kL~~l~ 143 (226)
..++..|...++.++
T Consensus 67 ~~e~e~Lr~e~~~l~ 81 (120)
T 3i00_A 67 ADDCEFLRAELDELR 81 (120)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 334555666666654
No 249
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=76.01 E-value=8 Score=30.16 Aligned_cols=48 Identities=19% Similarity=0.302 Sum_probs=39.3
Q ss_pred hHHHHHHHHHHhc--------------CCCCcHHHHHHHHhcccccHHHHHHHHHHHHHcCCcce
Q 027236 7 NTEAIVLNYVNEQ--------------NRPLNSQNVADALQKYNLKKAGIQKALDSLADNGKISF 57 (226)
Q Consensus 7 ea~~~Il~y~~~~--------------nrPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~ 57 (226)
.+.++|..||... .-|++-++|.+.+ |++..+|.++|..|.++|+|..
T Consensus 148 ~~~~Rl~~~L~~l~~~~~~~~~~~~~i~~~~t~~~lA~~l---g~sr~tvsR~l~~l~~~g~I~~ 209 (227)
T 3d0s_A 148 DVPGRVAKQLLQLAQRFGTQEGGALRVTHDLTQEEIAQLV---GASRETVNKALADFAHRGWIRL 209 (227)
T ss_dssp CHHHHHHHHHHHHHHHHEEEETTEEEEECCCCHHHHHHHH---TSCHHHHHHHHHHHHHTTSEEE
T ss_pred CHHHHHHHHHHHHHHHhCCcCCCceEEcCCCCHHHHHHHh---CCcHHHHHHHHHHHHHCCCEEe
Confidence 4566777777642 2378999999988 8999999999999999999975
No 250
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=75.65 E-value=17 Score=25.01 Aligned_cols=55 Identities=15% Similarity=0.216 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh--ccCC--HHHHHHHHHHHHHHHHHHHHHH
Q 027236 85 KEENAKLQEQLEEQRKAISKLEGEIRTLQ--SNLT--LEQIREKEAQLVKEVKEMENKL 139 (226)
Q Consensus 85 ~~~i~~l~~~l~~l~~~~k~l~~el~~l~--~~~t--~~el~~~i~~L~~e~~~l~~kL 139 (226)
+.++..|..++..|..++..++..|+.-. +... ..++...+.+++.++..+.++=
T Consensus 21 qrEle~le~~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~~~erW 79 (89)
T 2lw1_A 21 QRELEQLPQLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQAFERW 79 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777777777777777776422 1111 1445555555555555555543
No 251
>3kfw_X Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.50A {Mycobacterium tuberculosis}
Probab=75.40 E-value=7.2 Score=32.35 Aligned_cols=54 Identities=13% Similarity=0.272 Sum_probs=49.0
Q ss_pred HHHHHHHHH-HhcCCCCcHHHHHHHHhcccccHHHHHHHHHHHHHcCCcceeecC
Q 027236 8 TEAIVLNYV-NEQNRPLNSQNVADALQKYNLKKAGIQKALDSLADNGKISFKEYG 61 (226)
Q Consensus 8 a~~~Il~y~-~~~nrPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~K~~G 61 (226)
|+..|+..| -....+.++.++...+.-.||+-++|--+|--|+.+|.|.....|
T Consensus 5 arSlIlsll~g~~g~~i~~~~Li~l~~~~Gi~e~avRtAlsRL~~~G~L~~~~~G 59 (247)
T 3kfw_X 5 ARSVVLSVLLGAHPAWATASELIQLTADFGIKETTLRVALTRMVGAGDLVRSADG 59 (247)
T ss_dssp HHHHHHHHHTTTTTSCBCHHHHHHHHTTTTCCHHHHHHHHHHHHHTTSEEEETTE
T ss_pred CceeeEeeecCCCCCcccHHHHHHHHHHcCCChHHHHHHHHHHHHcCCeeccCCc
Confidence 788999976 445778999999999988899999999999999999999999888
No 252
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=75.26 E-value=18 Score=25.03 Aligned_cols=35 Identities=26% Similarity=0.372 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027236 78 SEELNQMKEENAKLQEQLEEQRKAISKLEGEIRTL 112 (226)
Q Consensus 78 ~ee~~~l~~~i~~l~~~l~~l~~~~k~l~~el~~l 112 (226)
.+++..++.++..+.+.+.......+.++.....+
T Consensus 13 eeEm~~~eeel~~lke~l~k~e~~rkele~~~~~l 47 (89)
T 3bas_A 13 EEEMKEQLKQMDKMKEDLAKTERIKKELEEQNVTL 47 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45688888888888887776666655555554443
No 253
>3d5l_A Regulatory protein RECX; PSI-II, NYSGXRC, DNA repair, 10123K, structural genomi protein structure initiative; 2.35A {Lactobacillus reuteri}
Probab=75.25 E-value=5.7 Score=32.22 Aligned_cols=52 Identities=13% Similarity=0.241 Sum_probs=41.7
Q ss_pred hHHHHHHHHHHhcCCCCcHHHHHHHHhcccccHHHHHHHHHHHHHcCCcceeec
Q 027236 7 NTEAIVLNYVNEQNRPLNSQNVADALQKYNLKKAGIQKALDSLADNGKISFKEY 60 (226)
Q Consensus 7 ea~~~Il~y~~~~nrPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~K~~ 60 (226)
.+....+.||- .|++|-.+|..-|...|++-..|..+|+.|.+.|.|.-..|
T Consensus 62 ~a~~~Al~~Ls--~r~~S~~EL~~KL~~kg~~~e~i~~vl~~L~~~g~ldD~rf 113 (221)
T 3d5l_A 62 KAYSRMLDYLS--YQMRTESDIVKKLKEIDTPEEFVEPILKKLRGQQLIDDHAY 113 (221)
T ss_dssp HHHHHHHHHHT--TSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHH
T ss_pred HHHHHHHHHhc--cccccHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCHHHH
Confidence 44555566664 79999999999888889999999999999999887643333
No 254
>3edp_A LIN2111 protein; APC88337, listeria innocua CLIP11262, structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.09A {Listeria innocua}
Probab=75.23 E-value=7.7 Score=31.55 Aligned_cols=51 Identities=16% Similarity=0.308 Sum_probs=34.7
Q ss_pred chHHHHHHHHHHh-c---CCCC-cHHHHHHHHhcccccHHHHHHHHHHHHHcCCcceee
Q 027236 6 DNTEAIVLNYVNE-Q---NRPL-NSQNVADALQKYNLKKAGIQKALDSLADNGKISFKE 59 (226)
Q Consensus 6 ~ea~~~Il~y~~~-~---nrPy-s~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~K~ 59 (226)
....+.|.+.+.. . +.+. |-.++...+ ||++++|.+||+.|+++|+|....
T Consensus 12 ~~i~~~l~~~I~~g~~~~g~~lPse~~La~~~---~vSr~tvr~Al~~L~~~G~i~~~~ 67 (236)
T 3edp_A 12 EVIASKIKDSINRDEYKTGMLMPNETALQEIY---SSSRTTIRRAVDLLVEEGLVVRKN 67 (236)
T ss_dssp HHHHHHHHHHHHTTSSCCCC--CCHHHHHHHT---TCCHHHHHHHHHHHHHTTSEEEET
T ss_pred HHHHHHHHHHHHhCCCCCcCCCcCHHHHHHHH---CcCHHHHHHHHHHHHHCCCEEEEC
Confidence 4444555555543 2 2333 666666555 899999999999999999987654
No 255
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=75.15 E-value=19 Score=25.45 Aligned_cols=61 Identities=15% Similarity=0.235 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 027236 81 LNQMKEENAKLQEQLEEQRKAISKLEGEIRTLQSNLTLEQIREKEAQLVKEVKEMENKLAKLR 143 (226)
Q Consensus 81 ~~~l~~~i~~l~~~l~~l~~~~k~l~~el~~l~~~~t~~el~~~i~~L~~e~~~l~~kL~~l~ 143 (226)
+..+..++..|+.+..........++..+..+.. ...++...|..|...+..++..|+.+.
T Consensus 4 MdaIKkKm~~lk~e~e~a~drae~~e~~~k~~e~--~~~~~E~Ei~sL~kk~~~lE~eld~~e 64 (101)
T 3u1c_A 4 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEE--RSKQLEDDIVQLEKQLRVTEDSRDQVL 64 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555555555444444432 234455566666666666666665544
No 256
>3elk_A Putative transcriptional regulator TA0346; structural genomics, PSI-2, prote structure initiative; 1.70A {Thermoplasma acidophilum}
Probab=75.08 E-value=16 Score=26.26 Aligned_cols=59 Identities=15% Similarity=0.306 Sum_probs=44.7
Q ss_pred HHHHHHHHHHhcCCCCcHHHHHHHHhc---ccccHHHHHHHHHHHHHcCCcceeec----Cc-eeEEEe
Q 027236 8 TEAIVLNYVNEQNRPLNSQNVADALQK---YNLKKAGIQKALDSLADNGKISFKEY----GK-QKIYIA 68 (226)
Q Consensus 8 a~~~Il~y~~~~nrPys~~di~~~l~~---~~v~K~~v~k~L~~Lv~~g~i~~K~~----GK-~kiY~~ 68 (226)
-+-.||..+.. .|-..-+|...+.. ..++..++-.+|..|.++|+|..... |. .++|..
T Consensus 15 l~~~IL~lL~~--~p~~gyel~~~l~~~~~~~i~~gtly~~L~~Le~~GlI~~~~~~~~~~~~rk~Y~l 81 (117)
T 3elk_A 15 ITLYILKELVK--RPMHGYELQKSMFETTGQALPQGSIYILLKTMKERGFVISESSVNEKGQQLTVYHI 81 (117)
T ss_dssp HHHHHHHHHHH--SCEEHHHHHHHHHHHHSCCCCTTHHHHHHHHHHHHTSEEEEEEEC-CCCEEEEEEE
T ss_pred HHHHHHHHHHc--CCCCHHHHHHHHHHHhCCCCCcchHHHHHHHHHHCCCEEEEeeecCCCCCceEEEE
Confidence 45578888864 67777778777753 24888999999999999999998864 43 456655
No 257
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=74.89 E-value=14 Score=24.97 Aligned_cols=50 Identities=20% Similarity=0.280 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 027236 83 QMKEENAKLQEQLEEQRKAISKLEGEIRTLQSNLTLEQIREKEAQLVKEVKEMENKLAK 141 (226)
Q Consensus 83 ~l~~~i~~l~~~l~~l~~~~k~l~~el~~l~~~~t~~el~~~i~~L~~e~~~l~~kL~~ 141 (226)
.|..+.......+..+...++..+... ..+...|..|+..+..++..|+.
T Consensus 10 ~lk~e~d~a~~~~~~~e~~l~~~e~~~---------~~~E~ev~~L~kKiq~lE~eld~ 59 (81)
T 1ic2_A 10 MLKLDKENALDRAEQAEADKKAAEERS---------KQLEDELVALQKKLKGTEDELDK 59 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---------HhhHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444443333 23334445555555555554444
No 258
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=74.22 E-value=8 Score=30.28 Aligned_cols=56 Identities=11% Similarity=0.119 Sum_probs=42.5
Q ss_pred hHHHHHHHHHHh----c---------CCCCcHHHHHHHHhcccccHHHHHHHHHHHHHcCCcceeecCceeEEEe
Q 027236 7 NTEAIVLNYVNE----Q---------NRPLNSQNVADALQKYNLKKAGIQKALDSLADNGKISFKEYGKQKIYIA 68 (226)
Q Consensus 7 ea~~~Il~y~~~----~---------nrPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~K~~GK~kiY~~ 68 (226)
.++++|..||.. . .-|++-++|.+.+ |++..+|.++|..|.++|+|... .| .|...
T Consensus 152 ~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~lA~~l---g~sr~tvsR~l~~l~~~g~I~~~-~~--~i~i~ 220 (232)
T 2gau_A 152 HVRGRLAETLLILKENFGFENDGATLSIYLSREELATLS---NMTVSNAIRTLSTFVSERMLALD-GK--RIKII 220 (232)
T ss_dssp CHHHHHHHHHHHHHHHHCBCTTSSBBSCCCCHHHHHHHT---TSCHHHHHHHHHHHHHTTSEEEE-TT--EEEES
T ss_pred CHHHHHHHHHHHHHHHcCCCCCCcEEEcccCHHHHHHHh---CCCHHHHHHHHHHHHHCCCEeeC-CC--EEEEe
Confidence 456777777743 1 2478999998888 89999999999999999999654 23 35554
No 259
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=73.97 E-value=19 Score=29.64 Aligned_cols=58 Identities=22% Similarity=0.321 Sum_probs=46.3
Q ss_pred HHHHHHHHHHhc-CCCCcHHHHHHHHhcccccHHHHHHHHHHHHHcCCcceeecCce--eEEEe
Q 027236 8 TEAIVLNYVNEQ-NRPLNSQNVADALQKYNLKKAGIQKALDSLADNGKISFKEYGKQ--KIYIA 68 (226)
Q Consensus 8 a~~~Il~y~~~~-nrPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~K~~GK~--kiY~~ 68 (226)
.+=.||.++.+. +.|-+.++|...+ ++.++++..+|+.|...|+|.-+.-..- .++..
T Consensus 35 ~q~~vL~~L~~~~~~~~~~~el~~~l---~~~~~t~t~~l~rLe~~G~i~R~~~~~DrR~~~i~ 95 (250)
T 1p4x_A 35 KEFILLTYLFHQQENTLPFKKIVSDL---CYKQSDLVQHIKVLVKHSYISKVRSKIDERNTYIS 95 (250)
T ss_dssp HHHHHHHHHHSCSCSEEEHHHHHHHS---SSCGGGTHHHHHHHHHTTSCEEEECSSSTTSEEEE
T ss_pred HHHHHHHHHHhcCCCCcCHHHHHHHH---CCCHhhHHHHHHHHHHCCCEEecCCCCCCCeEEEE
Confidence 455789999876 3689999998877 6899999999999999999988755432 45544
No 260
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=73.72 E-value=8.8 Score=34.31 Aligned_cols=104 Identities=15% Similarity=0.205 Sum_probs=48.0
Q ss_pred HHHHHhcCC--CCcHHHHHHHHhcccccHHHHHHHHHHHHHcCCcceeecCceeEEEeecCCCCCCCHHHHHHHHHHHHH
Q 027236 13 LNYVNEQNR--PLNSQNVADALQKYNLKKAGIQKALDSLADNGKISFKEYGKQKIYIARQDQFDIPNSEELNQMKEENAK 90 (226)
Q Consensus 13 l~y~~~~nr--Pys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~K~~GK~kiY~~~Q~~~~~~~~ee~~~l~~~i~~ 90 (226)
-+||.++-+ |=++.+++++|+...=.+..|...+.++.+. |-..|...+ +..+. .......
T Consensus 26 ~d~L~k~e~~V~~~l~~LE~~l~elsn~ts~v~~Lvk~iq~~-------------~~~~Q~~~~--d~~e~--~tq~skk 88 (409)
T 1m1j_C 26 ADFFNKYRLTTDGELLEIEGLLQQATNSTGSIEYLIQHIKTI-------------YPSEKQTLP--QSIEQ--LTQKSKK 88 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------SCSSTTCCS--SCHHH--HHHHHHH
T ss_pred HHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------------cccccCCCC--Cchhh--HHHHHHH
Confidence 344444444 3466677777764221234444444444443 112244333 22322 2445556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHH
Q 027236 91 LQEQLEEQRKAISKLEGEIRTLQSNLTLEQIREKEAQLVKEVKEM 135 (226)
Q Consensus 91 l~~~l~~l~~~~k~l~~el~~l~~~~t~~el~~~i~~L~~e~~~l 135 (226)
+.+++..++..+.....++..|...+. .+...|..|+..+.++
T Consensus 89 ml~~~~~~e~~~~~~~~~i~~l~~~~~--~~~~~i~~l~~~i~~l 131 (409)
T 1m1j_C 89 IIEEIIRYENTILAHENTIQQLTDMHI--MNSNKITQLKQKIAQL 131 (409)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHH--hhHHHHHHHHHHHHHH
Confidence 666666666666665555555543321 2233444444444433
No 261
>3qph_A TRMB, A global transcription regulator; transcriptional regulator; HET: SUC; 2.99A {Pyrococcus furiosus}
Probab=73.25 E-value=0.86 Score=39.73 Aligned_cols=56 Identities=16% Similarity=0.195 Sum_probs=41.5
Q ss_pred HHHHHHHHHHhcCCCCcHHHHHHHHhcccccHHHHHHHHHHHHHcCCcceeecCceeEEEe
Q 027236 8 TEAIVLNYVNEQNRPLNSQNVADALQKYNLKKAGIQKALDSLADNGKISFKEYGKQKIYIA 68 (226)
Q Consensus 8 a~~~Il~y~~~~nrPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~K~~GK~kiY~~ 68 (226)
.+..++-.|.. +-|-++.+|.+.+ |++++.|-.+|++|.+.|+|... -|.-..|.+
T Consensus 19 ~ea~vY~~Ll~-~g~~t~~eia~~~---gv~~~~Vy~~L~~L~~~GlV~~~-~g~p~~y~a 74 (342)
T 3qph_A 19 YEILTYWTLLV-YGPSTAKEISTKS---GIPYNRVYDTISSLKLRGFVTEI-EGTPKVYAA 74 (342)
T ss_dssp HTTSCSHHHHH-HHHHHHSCCSSST---TSSSCSCCHHHHHHHHHTSEEEE-CCTTCEEEE
T ss_pred HHHHHHHHHHH-cCCCCHHHHHHHH---CcCHHHHHHHHHHHHHCCCEEEE-cCceeEEEE
Confidence 33444555553 3466766666555 89999999999999999999877 467778887
No 262
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=73.23 E-value=69 Score=36.06 Aligned_cols=62 Identities=23% Similarity=0.362 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 027236 78 SEELNQMKEENAKLQEQLEEQRKAISKLEGEIRTLQSNLTLEQIREKEAQLVKEVKEMENKLAK 141 (226)
Q Consensus 78 ~ee~~~l~~~i~~l~~~l~~l~~~~k~l~~el~~l~~~~t~~el~~~i~~L~~e~~~l~~kL~~ 141 (226)
.++++.++.++...++++...+.++++++++|+.|+... +++..+.+.|+.+....+.+|..
T Consensus 2013 r~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~--~~~~~ek~~L~~e~~~~~~kl~r 2074 (3245)
T 3vkg_A 2013 REEVEQLENAANELKLKQDEIVATITALEKSIATYKEEY--ATLIRETEQIKTESSKVKNKVDR 2074 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888888888888888888888888888888887553 45666777777777777777754
No 263
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=73.15 E-value=10 Score=24.57 Aligned_cols=17 Identities=24% Similarity=0.602 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 027236 121 IREKEAQLVKEVKEMEN 137 (226)
Q Consensus 121 l~~~i~~L~~e~~~l~~ 137 (226)
|...|..|+.++..|..
T Consensus 42 L~~~i~~L~~E~~~Lk~ 58 (63)
T 1ci6_A 42 LKERADSLAKEIQYLKD 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444433
No 264
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=72.97 E-value=31 Score=26.87 Aligned_cols=55 Identities=20% Similarity=0.246 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 027236 87 ENAKLQEQLEEQRKAISKLEGEIRTLQSNLTLEQIREKEAQLVKEVKEMENKLAKLR 143 (226)
Q Consensus 87 ~i~~l~~~l~~l~~~~k~l~~el~~l~~~~t~~el~~~i~~L~~e~~~l~~kL~~l~ 143 (226)
++..|+.++.+++..++.-...-..+++. ..|+...+..++..+.+|.+++..|.
T Consensus 7 Ki~~LekQL~E~n~kLk~EsE~~~rlkK~--~tEl~k~~~~~E~~~rELq~~~~~L~ 61 (168)
T 3o0z_A 7 KLSQLQKQLEEANDLLRTESDTAVRLRKS--HTEMSKSISQLESLNRELQERNRILE 61 (168)
T ss_dssp ---CTHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444433333332 23444444444444444444444443
No 265
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=72.64 E-value=23 Score=25.10 Aligned_cols=71 Identities=8% Similarity=0.205 Sum_probs=44.9
Q ss_pred CCCCCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCH---HHHHHHHHHHHHHHHHHHHHHHH
Q 027236 71 DQFDIPNSEE-LNQMKEENAKLQEQLEEQRKAISKLEGEIRTLQSNLTL---EQIREKEAQLVKEVKEMENKLAK 141 (226)
Q Consensus 71 ~~~~~~~~ee-~~~l~~~i~~l~~~l~~l~~~~k~l~~el~~l~~~~t~---~el~~~i~~L~~e~~~l~~kL~~ 141 (226)
..|..++++. ...+..+|.+|+.++.........+..=...+...|.- .-+..++.+...++..|+..+..
T Consensus 6 ~d~s~LPpeqRkkkL~~Ki~el~~ei~ke~~~regl~Km~~vY~~nP~~GD~~s~~~~L~e~~~kid~L~~el~K 80 (98)
T 2ke4_A 6 EDFSHLPPEQQRKRLQQQLEERSRELQKEVDQREALKKMKDVYEKTPQMGDPASLEPQIAETLSNIERLKLEVQK 80 (98)
T ss_dssp SCSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHCGGGCCGGGSHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666777 57889999999999998888877777777776655443 22233344444444444444333
No 266
>2wv0_A YVOA, HTH-type transcriptional repressor YVOA; DNA-binding, transcription regulation, transcriptional regulator, GNTR/HUTC family; 2.40A {Bacillus subtilis}
Probab=72.63 E-value=4.9 Score=32.86 Aligned_cols=54 Identities=15% Similarity=0.307 Sum_probs=37.8
Q ss_pred chHHHHHHHHHHh----cCCCC-cHHHHHHHHhcccccHHHHHHHHHHHHHcCCcceeecCce
Q 027236 6 DNTEAIVLNYVNE----QNRPL-NSQNVADALQKYNLKKAGIQKALDSLADNGKISFKEYGKQ 63 (226)
Q Consensus 6 ~ea~~~Il~y~~~----~nrPy-s~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~K~~GK~ 63 (226)
....+.|.+.+.. .+.+. |..++...+ ||+.++|.++|+.|+++|+|... -|+.
T Consensus 13 ~~i~~~l~~~I~~g~~~~g~~lPse~~La~~~---~vSr~tvr~Al~~L~~~G~i~~~-~g~G 71 (243)
T 2wv0_A 13 YQIMEQLKTQIKNGELQPDMPLPSEREYAEQF---GISRMTVRQALSNLVNEGLLYRL-KGRG 71 (243)
T ss_dssp HHHHHHHHHHHHHTSSCTTCBCCCHHHHHHHH---TCCHHHHHHHHHHHHHTTSEEEC-TTSC
T ss_pred HHHHHHHHHHHHhCCCCCcCCCcCHHHHHHHH---CcCHHHHHHHHHHHHHCCcEEEe-CCCe
Confidence 3444445554443 23334 777887777 89999999999999999999755 3543
No 267
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=72.34 E-value=7 Score=31.21 Aligned_cols=56 Identities=21% Similarity=0.340 Sum_probs=43.0
Q ss_pred hHHHHHHHHHHh----c----------CCCCcHHHHHHHHhcccccHHHHHHHHHHHHHcCCcceeecCceeEEEe
Q 027236 7 NTEAIVLNYVNE----Q----------NRPLNSQNVADALQKYNLKKAGIQKALDSLADNGKISFKEYGKQKIYIA 68 (226)
Q Consensus 7 ea~~~Il~y~~~----~----------nrPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~K~~GK~kiY~~ 68 (226)
.++++|..|+.. . .-|++-++|.+.+ |++..+|.++|..|.++|+|... .| +|...
T Consensus 148 ~~~~Rl~~~L~~l~~~~~~~~~~~~~i~~~~t~~~iA~~l---G~sr~tvsR~l~~L~~~g~I~~~-~~--~i~i~ 217 (250)
T 3e6c_C 148 NPTIRILRLFYELCSSQGKRVGDTYEITMPLSQKSIGEIT---GVHHVTVSRVLASLKRENILDKK-KN--KIIVY 217 (250)
T ss_dssp CHHHHHHHHHHHHHHHHCEEETTEEEEECCCCHHHHHHHH---TCCHHHHHHHHHHHHHTTSEEEC-SS--EEEES
T ss_pred CHHHHHHHHHHHHHHHhCCCCCCCcEecCCCCHHHHHHHh---CCcHHHHHHHHHHHHHCCCeEeC-CC--EEEEe
Confidence 466777777753 2 2388999999988 89999999999999999999753 23 45554
No 268
>2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae}
Probab=72.26 E-value=9.7 Score=32.22 Aligned_cols=48 Identities=10% Similarity=0.200 Sum_probs=39.5
Q ss_pred HHHHHHHhcCCCCcHHHHHHHHhcccccHHHHHHHHHHHHHcCCcceeecCc
Q 027236 11 IVLNYVNEQNRPLNSQNVADALQKYNLKKAGIQKALDSLADNGKISFKEYGK 62 (226)
Q Consensus 11 ~Il~y~~~~nrPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~K~~GK 62 (226)
....+|+. +.+.+..+|.+.| +|+..+|-+-|+.|.++|+|..+.+|-
T Consensus 11 ~~ia~l~~-~~~~~~~ela~~l---~vS~~tIrRdL~~l~~~G~v~iri~g~ 58 (315)
T 2w48_A 11 VKIAQLYY-EQDMTQAQIAREL---GIYRTTISRLLKRGREQGIVTIAINYD 58 (315)
T ss_dssp HHHHHHHH-TSCCCHHHHHHHT---TCCHHHHHHHHHHHHHTTSEEEEECSS
T ss_pred HHHHHHHH-cCCCCHHHHHHHH---CcCHHHHHHHHHHHHHCCcEEEEecCC
Confidence 34445543 4569999999888 899999999999999999999888883
No 269
>2gqq_A Leucine-responsive regulatory protein; helix-turn-helix, transcription; 3.20A {Escherichia coli} PDB: 2l4a_A
Probab=71.66 E-value=0.57 Score=36.04 Aligned_cols=48 Identities=15% Similarity=0.214 Sum_probs=38.8
Q ss_pred chHHHHHHHHHHhcCCCCcHHHHHHHHhcccccHHHHHHHHHHHHHcCCcce
Q 027236 6 DNTEAIVLNYVNEQNRPLNSQNVADALQKYNLKKAGIQKALDSLADNGKISF 57 (226)
Q Consensus 6 ~ea~~~Il~y~~~~nrPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~ 57 (226)
+.-...|+. ....+.+.|..++...+ ||+.+.|-++|..|.++|+|..
T Consensus 12 d~l~~~Il~-~l~~~~~ls~~eLa~~l---gvSr~~vr~al~~L~~~Gli~~ 59 (163)
T 2gqq_A 12 DRIDRNILN-ELQKDGRISNVELSKRV---GLSPTPCLERVRRLERQGFIQG 59 (163)
T ss_dssp CSHHHHHHH-HHHHCSSCCTTGGGTSS---SCCTTTSSSTHHHHHHHTSEEE
T ss_pred hHHHHHHHH-HHHhCCCCCHHHHHHHH---CcCHHHHHHHHHHHHHCCcEEE
Confidence 667788888 44556667866666555 8999999999999999999985
No 270
>3hhh_A Transcriptional regulator, PADR family; PF03551, structural PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.70A {Enterococcus faecalis} SCOP: a.4.5.0
Probab=71.61 E-value=25 Score=25.22 Aligned_cols=59 Identities=17% Similarity=0.237 Sum_probs=43.5
Q ss_pred HHHHHHHHHHhcCCCCcHHHHHHHHhc---ccccHHHHHHHHHHHHHcCCcceeec----Cce-eEEEe
Q 027236 8 TEAIVLNYVNEQNRPLNSQNVADALQK---YNLKKAGIQKALDSLADNGKISFKEY----GKQ-KIYIA 68 (226)
Q Consensus 8 a~~~Il~y~~~~nrPys~~di~~~l~~---~~v~K~~v~k~L~~Lv~~g~i~~K~~----GK~-kiY~~ 68 (226)
-+-.||..+.+ +|..--+|...+.. ..++-.++-.+|..|.++|+|..... |.. ++|..
T Consensus 14 l~~~IL~lL~~--~p~~Gyei~~~l~~~g~~~is~gtlY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y~l 80 (116)
T 3hhh_A 14 LEGLVLAIIQR--KETYGYEITKILNDQGFTEIVEGTVYTILLRLEKNQWVIAEKKPSEKGPMRKFYRL 80 (116)
T ss_dssp HHHHHHHHHHH--SCBCHHHHHHHHHTTSCSSCCHHHHHHHHHHHHHTTSEEEEEEECC--CEEEEEEE
T ss_pred HHHHHHHHHhc--CCCCHHHHHHHHHHcCCCCCCccHHHHHHHHHHHCCCEEEEeeecCCCCCceEEEE
Confidence 35578888874 57666678777753 25899999999999999999998753 444 55555
No 271
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=71.60 E-value=13 Score=21.91 Aligned_cols=28 Identities=21% Similarity=0.382 Sum_probs=19.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027236 77 NSEELNQMKEENAKLQEQLEEQRKAISK 104 (226)
Q Consensus 77 ~~ee~~~l~~~i~~l~~~l~~l~~~~k~ 104 (226)
+++++..+..++..|...+..++..+..
T Consensus 18 speelaaleselqalekklaalksklqa 45 (48)
T 1g6u_A 18 SPEELAALESELQALEKKLAALKSKLQA 45 (48)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3788888777777776666666555443
No 272
>3go5_A Multidomain protein with S1 RNA-binding domains; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.40A {Streptococcus pneumoniae}
Probab=71.48 E-value=9.7 Score=32.22 Aligned_cols=55 Identities=25% Similarity=0.563 Sum_probs=44.9
Q ss_pred chHHHHHHHHHHhcCC--CCc----HHHHHHHHhcccccHHHHHHHHHHHHHcCCcceeecCce
Q 027236 6 DNTEAIVLNYVNEQNR--PLN----SQNVADALQKYNLKKAGIQKALDSLADNGKISFKEYGKQ 63 (226)
Q Consensus 6 ~ea~~~Il~y~~~~nr--Pys----~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~K~~GK~ 63 (226)
++..+.||+||.+.+- ||+ ..+|.+.+ +++|.+.++||=.|-.+|+|.-..-|..
T Consensus 223 ~~~a~~il~~L~~~~G~l~~~DkS~pe~I~~~f---~~SK~~FKrAiG~L~K~~~I~~~~~~~~ 283 (285)
T 3go5_A 223 ENDAQMILTYLESNGGFMTLNDKSSPDDIKATF---GISKGQFKKALGGLMKAGKIKQDQFGTE 283 (285)
T ss_dssp CHHHHHHHHHHHHTTTEESCCTTSCHHHHHHHH---SSCHHHHHHHHHHHHHTTCEEEETTEEE
T ss_pred chHHHHHHHHHHhcCCeeccCCCCCHHHHHHHh---CcCHHHHHHHHHHHhhCCcEEEcCCcEE
Confidence 6888999999997653 664 55666666 8999999999999999999998775543
No 273
>2xub_A DNA-directed RNA polymerase III subunit RPC3; transcription, winged helix; 2.80A {Homo sapiens} PDB: 2xv4_S
Probab=71.46 E-value=61 Score=29.58 Aligned_cols=48 Identities=15% Similarity=0.207 Sum_probs=32.4
Q ss_pred HHHHHHHHHhcCCCCcHHHHHHHHhcccccHHHHHHHHHHHHHcCCcceeec
Q 027236 9 EAIVLNYVNEQNRPLNSQNVADALQKYNLKKAGIQKALDSLADNGKISFKEY 60 (226)
Q Consensus 9 ~~~Il~y~~~~nrPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~K~~ 60 (226)
--.|+.+|..... ..-.+|.+.+ +++...|.++|-.|.+.|.|.....
T Consensus 362 a~RI~r~L~~~~~-l~d~~ia~~a---~i~~k~vR~~Ly~L~~~g~v~~qev 409 (534)
T 2xub_A 362 CARIFRLVLQKKH-IEQKQVEDFA---MIPAKEAKDMLYKMLSENFMSLQEI 409 (534)
T ss_dssp HHHHHHHHHHC----CHHHHHHHH---CSCHHHHHHHHHHHHHTTCC-----
T ss_pred HHHHHHHHHHcCC-CCHHHHHHHh---CCCHHHHHHHHHHHHHCCCeEEEEc
Confidence 3457777765553 6666676655 8999999999999999999999988
No 274
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=71.43 E-value=10 Score=21.65 Aligned_cols=29 Identities=24% Similarity=0.510 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027236 84 MKEENAKLQEQLEEQRKAISKLEGEIRTL 112 (226)
Q Consensus 84 l~~~i~~l~~~l~~l~~~~k~l~~el~~l 112 (226)
|..++...+..+.+++.+...|+.++..|
T Consensus 5 mRrKn~a~qqDIddlkrQN~~Le~Qir~l 33 (34)
T 1a93_B 5 MRRKNDTHQQDIDDLKRQNALLEQQVRAL 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HhhhhHhhHhhHHHHHHHHHHHHHHHHhc
Confidence 44566666666666666666666665543
No 275
>3ihu_A Transcriptional regulator, GNTR family; YP_298823.1, DNA binding protein, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.92A {Ralstonia eutropha}
Probab=71.31 E-value=22 Score=28.09 Aligned_cols=40 Identities=15% Similarity=0.331 Sum_probs=32.3
Q ss_pred CCCCcHHHHHHHHhcccccHHHHHHHHHHHHHcCCcceeecCc
Q 027236 20 NRPLNSQNVADALQKYNLKKAGIQKALDSLADNGKISFKEYGK 62 (226)
Q Consensus 20 nrPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~K~~GK 62 (226)
..+.+-.++...+ ||+.+.|-++|..|..+|+|.....+-
T Consensus 37 G~~L~E~~La~~l---gVSRtpVREAl~~L~~eGlv~~~~~~G 76 (222)
T 3ihu_A 37 GQRLVETDLVAHF---GVGRNSVREALQRLAAEGIVDLQRHRG 76 (222)
T ss_dssp TCEECHHHHHHHH---TCCHHHHHHHHHHHHHTTSEEECSTTC
T ss_pred CCccCHHHHHHHH---CCCHHHHHHHHHHHHHCCCEEEecCCC
Confidence 3455666666666 899999999999999999999886643
No 276
>2hs5_A Putative transcriptional regulator GNTR; APC6050, rhodococcus SP. RH structural genomics, PSI-2, protein structure initiative; 2.20A {Rhodococcus SP} SCOP: a.4.5.6 a.78.1.1
Probab=71.18 E-value=4.6 Score=32.85 Aligned_cols=39 Identities=13% Similarity=0.305 Sum_probs=32.8
Q ss_pred CCCCcHHHHHHHHhcccccHHHHHHHHHHHHHcCCcceeecC
Q 027236 20 NRPLNSQNVADALQKYNLKKAGIQKALDSLADNGKISFKEYG 61 (226)
Q Consensus 20 nrPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~K~~G 61 (226)
..+.+-.++...+ ||+++.|-++|..|..+|+|......
T Consensus 49 G~~L~e~~La~~l---gVSRtpVREAL~~L~~eGlv~~~~~~ 87 (239)
T 2hs5_A 49 GARLSEPDICAAL---DVSRNTVREAFQILIEDRLVAHELNR 87 (239)
T ss_dssp TCEECHHHHHHHH---TCCHHHHHHHHHHHHHTTSEEEETTT
T ss_pred cCEeCHHHHHHHH---CCCHHHHHHHHHHHHHCCCEEEeCCC
Confidence 3456877777766 89999999999999999999988754
No 277
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=71.16 E-value=27 Score=25.38 Aligned_cols=90 Identities=19% Similarity=0.262 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCHHHHHHHH
Q 027236 79 EELNQMKEENAKLQEQLEEQRKAISKLEGEIRTLQSNLTLEQIREKEAQLVKEVKEMENKLAKLRGGVTLVKPEDRMAVE 158 (226)
Q Consensus 79 ee~~~l~~~i~~l~~~l~~l~~~~k~l~~el~~l~~~~t~~el~~~i~~L~~e~~~l~~kL~~l~~~~~~vs~ee~~~~~ 158 (226)
.+...+......+++++..+..+...|+..+..- +++=..++..|...+..-+.-|..|+... ..-...+.
T Consensus 6 ~~~~~lq~~~~ql~~qL~k~~~~r~~Le~~w~~k-----~E~~k~qV~~L~~~~q~sE~~L~~Lqq~f----sq~q~~vq 76 (112)
T 1x79_B 6 DQVKKLQLMLRQANDQLEKTMKDKQELEDFIKQS-----SEDSSHQISALVLRAQASEILLEELQQGL----SQAKRDVQ 76 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHH
Confidence 3455666666677777777776666666664433 34556667777777777777776666431 11111222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 027236 159 EMFLEKLSQWRKRKRMLRDIWD 180 (226)
Q Consensus 159 ~~~~~~~~~w~kRkri~~~i~~ 180 (226)
... +..=..|.++|..+..
T Consensus 77 ~qL---~~Lt~~Re~V~~eL~r 95 (112)
T 1x79_B 77 EQM---AVLMQSREQVSEELVR 95 (112)
T ss_dssp HHH---HHHHHHHHHHHTC---
T ss_pred HHH---HHHHHHHHHHHHHHHH
Confidence 222 3444567777765543
No 278
>1yg2_A Gene activator APHA; virulence factor, winged helix, transcripti factor, transcription; 2.20A {Vibrio cholerae} SCOP: a.4.5.61
Probab=71.00 E-value=33 Score=26.30 Aligned_cols=58 Identities=12% Similarity=0.361 Sum_probs=43.4
Q ss_pred HHHHHHHHHhcCCCCcHHHHHHHHhc-----ccccHHHHHHHHHHHHHcCCcceeec---C--ceeEEEe
Q 027236 9 EAIVLNYVNEQNRPLNSQNVADALQK-----YNLKKAGIQKALDSLADNGKISFKEY---G--KQKIYIA 68 (226)
Q Consensus 9 ~~~Il~y~~~~nrPys~~di~~~l~~-----~~v~K~~v~k~L~~Lv~~g~i~~K~~---G--K~kiY~~ 68 (226)
+-.||.++.. .|-+.-+|...+.. .+++..+|-.+|+.|.++|+|..... | ..++|.+
T Consensus 4 ~~~iL~lL~~--~~~~gyel~~~l~~~~~~~~~~s~~~ly~~L~~Le~~GlI~~~~~~~~~~~~r~~Y~l 71 (179)
T 1yg2_A 4 PHVILTVLST--RDATGYDITKEFSASIGYFWKASHQQVYRELNKMGEQGLVTCVLEPQEGKPDRKVYSI 71 (179)
T ss_dssp HHHHHHHHHH--CCBCHHHHHHHHTTGGGGTCCCCHHHHHHHHHHHHHTTSEEECCC---------CEEE
T ss_pred HHHHHHHHhc--CCCCHHHHHHHHHHHhCCccCCCcCcHHHHHHHHHHCCCeEEEeecCCCCCCceEEEe
Confidence 3468888875 68888888887743 16899999999999999999998754 2 3467766
No 279
>3viq_A SWI5-dependent recombination DNA repair protein 1; recombination activator; 2.20A {Schizosaccharomyces pombe}
Probab=70.81 E-value=8.8 Score=28.43 Aligned_cols=14 Identities=14% Similarity=0.463 Sum_probs=11.2
Q ss_pred CHHHHHHHhCcccc
Q 027236 189 NLKEFKEELGIEYD 202 (226)
Q Consensus 189 ~~k~l~e~lGie~D 202 (226)
+...++..|||+.+
T Consensus 96 Tm~~mLk~L~Id~~ 109 (122)
T 3viq_A 96 TMSMFLNQFGVPVH 109 (122)
T ss_dssp CHHHHHHHTTCCTT
T ss_pred cHHHHHHHcCCCHH
Confidence 56788889998875
No 280
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=70.23 E-value=12 Score=33.28 Aligned_cols=57 Identities=25% Similarity=0.366 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Q 027236 80 ELNQMKEENAKLQEQLEEQRKAISKLEGEIRTLQSNLTLEQIREKEAQLVKEVKEMENKLAKLRGG 145 (226)
Q Consensus 80 e~~~l~~~i~~l~~~l~~l~~~~k~l~~el~~l~~~~t~~el~~~i~~L~~e~~~l~~kL~~l~~~ 145 (226)
++..+..++..|++++.+++..++.++.++..+ .+++...+.....|...+..++++
T Consensus 4 ~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~---------~~~~~~~~~~rr~l~n~~~elkgn 60 (403)
T 4etp_A 4 KIAALKEKIAALKEKIAALKEKIKDTELGMKEL---------NEILIKEETVRRTLHNELQELRGN 60 (403)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHcCCC
Confidence 455666777777777777777777776666555 444555555666677777777643
No 281
>3bwg_A Uncharacterized HTH-type transcriptional regulato; APC85486, YYDK, transcriptional regulator, structural genomi 2; 2.09A {Bacillus subtilis subsp} SCOP: a.4.5.6 d.190.1.2
Probab=70.06 E-value=6.2 Score=32.12 Aligned_cols=55 Identities=22% Similarity=0.312 Sum_probs=37.9
Q ss_pred chHHHHHHHHHHh-c---CCCC-cHHHHHHHHhcccccHHHHHHHHHHHHHcCCcceeecCcee
Q 027236 6 DNTEAIVLNYVNE-Q---NRPL-NSQNVADALQKYNLKKAGIQKALDSLADNGKISFKEYGKQK 64 (226)
Q Consensus 6 ~ea~~~Il~y~~~-~---nrPy-s~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~K~~GK~k 64 (226)
....+.|.+.+.. . +.+. |..++...+ ||++++|.++|..|+++|+|... -|+..
T Consensus 8 ~~i~~~l~~~I~~g~~~~g~~lPse~~La~~~---~vSr~tvr~Al~~L~~~g~i~~~-~g~G~ 67 (239)
T 3bwg_A 8 QQIATEIETYIEEHQLQQGDKLPVLETLMAQF---EVSKSTITKSLELLEQKGAIFQV-RGSGI 67 (239)
T ss_dssp CHHHHHHHHHHHHTTCCTTCBCCCHHHHHHHT---TCCHHHHHHHHHHHHHTTSEEEE-TTTEE
T ss_pred HHHHHHHHHHHHhCCCCCCCCCcCHHHHHHHH---CCCHHHHHHHHHHHHHCCcEEEe-CCceE
Confidence 3444555555443 2 2334 776776665 89999999999999999999754 45543
No 282
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=69.39 E-value=6.8 Score=27.10 Aligned_cols=22 Identities=18% Similarity=0.342 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 027236 119 EQIREKEAQLVKEVKEMENKLA 140 (226)
Q Consensus 119 ~el~~~i~~L~~e~~~l~~kL~ 140 (226)
+.|...|..|+.++..++..|.
T Consensus 25 e~le~~Ie~LE~~i~~le~~la 46 (89)
T 2lw1_A 25 EQLPQLLEDLEAKLEALQTQVA 46 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3556666666677777766664
No 283
>3lmm_A Uncharacterized protein; multi-domained alpha-beta protein, structural genomics, PSI- 2, protein structure initiative; 3.00A {Corynebacterium diphtheriae}
Probab=69.33 E-value=0.97 Score=42.33 Aligned_cols=58 Identities=12% Similarity=0.255 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHhcCCCCcHHHHHHHHhcccccHHHHHHHHHHHHHcCCcceeecCceeEEEe
Q 027236 7 NTEAIVLNYVNEQNRPLNSQNVADALQKYNLKKAGIQKALDSLADNGKISFKEYGKQKIYIA 68 (226)
Q Consensus 7 ea~~~Il~y~~~~nrPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~K~~GK~kiY~~ 68 (226)
..+.+|++|+.... +-+..||...+ +++..++..+|+.|+++|+|..---|+...|..
T Consensus 516 ~~~~~I~~~l~~~g-~it~~di~~l~---~ls~~qa~~~L~~Lv~~G~l~~~G~gr~t~Y~~ 573 (583)
T 3lmm_A 516 ELTNAAMLWLSEVG-DLATSDLMAMC---GVSRGTAKACVDGLVDEERVVAVGGGRSRRYRL 573 (583)
T ss_dssp --------------------------------------------------------------
T ss_pred HHHHHHHHHHHHcC-CcCHHHHHHHH---CCCHHHHHHHHHHHHHCCcEEEeCCCCceEEEE
Confidence 45678999999754 46888888877 689999999999999999997777778888876
No 284
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=69.02 E-value=31 Score=25.74 Aligned_cols=33 Identities=9% Similarity=0.220 Sum_probs=24.0
Q ss_pred cCCCCcHHHHH-----HHHhcccccHHHHHHHHHHHHH
Q 027236 19 QNRPLNSQNVA-----DALQKYNLKKAGIQKALDSLAD 51 (226)
Q Consensus 19 ~nrPys~~di~-----~~l~~~~v~K~~v~k~L~~Lv~ 51 (226)
.+|-|+..||. ..|...|++-..+..+|+.+..
T Consensus 37 g~R~Y~~~dl~~l~~I~~lr~~G~sL~eIk~~l~~~~~ 74 (142)
T 3gp4_A 37 GVRKFGAEDLRWILFTRQMRRAGLSIEALIDYLALFRE 74 (142)
T ss_dssp SCBCBCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCeeeCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhc
Confidence 46889988884 3344458999999998886543
No 285
>3ri2_A Transcriptional regulator, PADR-like family; PSI-biology, midwest center for structural genomics, MCSG, transcription regulator; 2.10A {Eggerthella lenta} PDB: 4ejo_A
Probab=68.30 E-value=28 Score=25.31 Aligned_cols=57 Identities=14% Similarity=0.220 Sum_probs=42.0
Q ss_pred HHHHHHHHHhcCCCCcHHHHHHHHhc--ccccHHHHHHHHHHHHHcCCcceeec---C-ceeEEEe
Q 027236 9 EAIVLNYVNEQNRPLNSQNVADALQK--YNLKKAGIQKALDSLADNGKISFKEY---G-KQKIYIA 68 (226)
Q Consensus 9 ~~~Il~y~~~~nrPys~~di~~~l~~--~~v~K~~v~k~L~~Lv~~g~i~~K~~---G-K~kiY~~ 68 (226)
+-.||..+. +|..--+|...+.. ..++-.++--+|..|.++|+|....- | ..++|..
T Consensus 23 ~~~IL~lL~---~p~~GYei~~~l~~~~~~is~gtlY~~L~rLe~~GlI~~~~~~~~~~~rk~Y~L 85 (123)
T 3ri2_A 23 VMLVLSQLR---EPAYGYALVKSLADHGIPIEANTLYPLMRRLESQGLLASEWDNGGSKPRKYYRT 85 (123)
T ss_dssp HHHHHHHTT---SCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEEEEEEECSSCEEEEEEE
T ss_pred HHHHHHHHc---CCCCHHHHHHHHHHhCCCCCcchHHHHHHHHHHCCCEEEEeccCCCCCceEEEE
Confidence 445777665 67666677776654 37899999999999999999998742 3 3466666
No 286
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=68.19 E-value=14 Score=29.16 Aligned_cols=56 Identities=11% Similarity=0.179 Sum_probs=42.4
Q ss_pred hHHHHHHHHHHhc--------------CC-CCcHHHHHHHHhcccccH-HHHHHHHHHHHHcCCcceeecCceeEEEe
Q 027236 7 NTEAIVLNYVNEQ--------------NR-PLNSQNVADALQKYNLKK-AGIQKALDSLADNGKISFKEYGKQKIYIA 68 (226)
Q Consensus 7 ea~~~Il~y~~~~--------------nr-Pys~~di~~~l~~~~v~K-~~v~k~L~~Lv~~g~i~~K~~GK~kiY~~ 68 (226)
.++++|..||... .- |++-++|.+.+ |++. .+|.++|..|.++|+|... .| .|+..
T Consensus 139 ~~~~Rla~~L~~l~~~~g~~~~~~~~i~~~~~t~~~lA~~l---G~sr~etvsR~l~~l~~~glI~~~-~~--~i~I~ 210 (238)
T 2bgc_A 139 GKLGSICSQLLILTYVYGKETPDGIKITLDNLTMQELGYSS---GIAHSSAVSRIISKLKQEKVIVYK-NS--CFYVQ 210 (238)
T ss_dssp HHHHHHHHHHHHHHHHHEEEETTEEEECCSCCCHHHHHHHT---TCCCHHHHHHHHHHHHHTTSEEEE-TT--EEEES
T ss_pred CHHHHHHHHHHHHHHHhCCCCCCceEEEeccCCHHHHHHHh---CCChHHHHHHHHHHHHHCCCEEec-CC--EEEEe
Confidence 4567777777541 22 79999999888 8999 7999999999999998665 23 35544
No 287
>2yu3_A DNA-directed RNA polymerase III 39 kDa polypeptide F variant; winged helix domain, RNA polymerase III C39 subunit, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=68.01 E-value=19 Score=25.36 Aligned_cols=50 Identities=28% Similarity=0.339 Sum_probs=39.8
Q ss_pred chHHHHHHHHHHh-cCCCCcHHHHHHHHhcccccHHHHHHHHHHHHHcCCccee
Q 027236 6 DNTEAIVLNYVNE-QNRPLNSQNVADALQKYNLKKAGIQKALDSLADNGKISFK 58 (226)
Q Consensus 6 ~ea~~~Il~y~~~-~nrPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~K 58 (226)
.+-+..|+.++.+ .|.=-...||-..+ ++..+.|.++|..|...|+|..-
T Consensus 36 t~~E~lVy~~I~~aGn~GIw~kdL~~~t---nL~~~~vtkiLK~LE~k~lIK~V 86 (95)
T 2yu3_A 36 DNQEKLVYQIIEDAGNKGIWSRDVRYKS---NLPLTEINKILKNLESKKLIKAV 86 (95)
T ss_dssp SHHHHHHHHHHHHHTTSCEEHHHHHHHH---TCCHHHHHHHHHHHHHHTSEEEE
T ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHh---CCCHHHHHHHHHHHHhCCCEEEe
Confidence 5678899999977 45545556776655 78999999999999999998754
No 288
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=67.91 E-value=9.7 Score=23.89 Aligned_cols=21 Identities=38% Similarity=0.593 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 027236 120 QIREKEAQLVKEVKEMENKLA 140 (226)
Q Consensus 120 el~~~i~~L~~e~~~l~~kL~ 140 (226)
+|..++..|.+++.++..+|.
T Consensus 30 eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 30 EMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 334444444444444444443
No 289
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=67.88 E-value=17 Score=23.16 Aligned_cols=20 Identities=20% Similarity=0.308 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 027236 119 EQIREKEAQLVKEVKEMENK 138 (226)
Q Consensus 119 ~el~~~i~~L~~e~~~l~~k 138 (226)
.+|..+|..|+.++..|...
T Consensus 39 ~~L~~~i~~L~~e~~~Lk~~ 58 (61)
T 1t2k_D 39 GQLQSEVTLLRNEVAQLKQL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555544443
No 290
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=67.71 E-value=26 Score=23.93 Aligned_cols=45 Identities=11% Similarity=0.216 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 027236 123 EKEAQLVKEVKEMENKLAKLRGGVTLVKPEDRMAVEEMFLEKLSQWRKRK 172 (226)
Q Consensus 123 ~~i~~L~~e~~~l~~kL~~l~~~~~~vs~ee~~~~~~~~~~~~~~w~kRk 172 (226)
-+|.+|+.++..+......++++ .+.+..-...+..-+..|..|.
T Consensus 27 mEieELKekN~~L~~e~~e~~~~-----~~~L~~en~qLk~E~~~wq~Rl 71 (81)
T 2jee_A 27 MEIEELKEKNNSLSQEVQNAQHQ-----REELERENNHLKEQQNGWQERL 71 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh-----hHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555554433 2233333344555568899996
No 291
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=67.45 E-value=45 Score=26.47 Aligned_cols=57 Identities=18% Similarity=0.265 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--CCHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027236 86 EENAKLQEQLEEQRKAISKLEGEIRTLQSN--LTLEQIREKEAQLVKEVKEMENKLAKL 142 (226)
Q Consensus 86 ~~i~~l~~~l~~l~~~~k~l~~el~~l~~~--~t~~el~~~i~~L~~e~~~l~~kL~~l 142 (226)
..+.+++.++.+....-++|+++|..--.. -.+.+|...+..|..++...+.++...
T Consensus 24 q~~~~le~El~EFqesSrELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~ 82 (189)
T 2v71_A 24 QSFQEARDELVEFQEGSRELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQ 82 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444443332211 112444445555555555555555444
No 292
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2
Probab=66.87 E-value=1.2 Score=35.09 Aligned_cols=58 Identities=10% Similarity=0.308 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHhcC-------CCCcHHHHHHHHhcccccHHHHHHHHHHHHHcCCcceeecCceeEEEeec
Q 027236 7 NTEAIVLNYVNEQN-------RPLNSQNVADALQKYNLKKAGIQKALDSLADNGKISFKEYGKQKIYIARQ 70 (226)
Q Consensus 7 ea~~~Il~y~~~~n-------rPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~K~~GK~kiY~~~Q 70 (226)
.++++|..||.... -|++-++|.+.+ |++..+|.++|..|.++|+|... ...|+..+.
T Consensus 142 ~~~~Rl~~~L~~~~~~~g~~~~~~t~~~lA~~l---g~sr~tvsR~l~~L~~~G~I~~~---~~~i~I~d~ 206 (213)
T 1o5l_A 142 TLREKLMNFLVRHMNEKRELTLPVTLEELSRLF---GCARPALSRVFQELEREGYIEKH---GRRIKVLKN 206 (213)
T ss_dssp -----------------------------------------------------------------------
T ss_pred CHHHHHHHHHHHHhccCCcccCCCCHHHHHHHh---CCCHHHHHHHHHHHHHCCeEEEc---CCEEEEech
Confidence 35566777776543 267777887777 89999999999999999999654 234555543
No 293
>3c1d_A Protein ORAA, regulatory protein RECX; tandem repeats, helix-turn-helix, cytoplasm, DNA damage, DNA repair, SOS response, DNA binding protein; 1.80A {Escherichia coli}
Probab=66.67 E-value=13 Score=28.33 Aligned_cols=53 Identities=8% Similarity=0.091 Sum_probs=42.2
Q ss_pred chHHHHHHHHHHhcCCCCcHHHHHHHHhcc-----c-----ccHHHHHHHHHHHHHcCCcceeec
Q 027236 6 DNTEAIVLNYVNEQNRPLNSQNVADALQKY-----N-----LKKAGIQKALDSLADNGKISFKEY 60 (226)
Q Consensus 6 ~ea~~~Il~y~~~~nrPys~~di~~~l~~~-----~-----v~K~~v~k~L~~Lv~~g~i~~K~~ 60 (226)
..+....+.||- .|++|-.+|..-|... | ++-..|..+|+.|.+.|.|.-..|
T Consensus 5 ~~a~~~Al~~Ls--~r~~S~~EL~~kL~~k~~~~~g~e~~~~~~~~i~~vl~~l~~~g~ldD~rf 67 (159)
T 3c1d_A 5 ARLLDRAVRILA--VRDHSEQELRRKLAAPIMGKNGPEEIDATAEDYERVIAWCHEHGYLDDSRF 67 (159)
T ss_dssp HHHHHHHHHHHT--TSCCCHHHHHHHHHCC-----------CCHHHHHHHHHHHHHTTSCCHHHH
T ss_pred HHHHHHHHHHhh--cccccHHHHHHHHHHHhhcccCccccCCCHHHHHHHHHHHHHcCCcCHHHH
Confidence 356677777775 7999999999988763 6 899999999999999888744333
No 294
>3cta_A Riboflavin kinase; structural genomics, transferase, PSI-2, protein structure initiative; 2.20A {Thermoplasma acidophilum dsm 1728} SCOP: a.4.5.28 b.43.5.2
Probab=66.65 E-value=21 Score=28.47 Aligned_cols=61 Identities=20% Similarity=0.251 Sum_probs=44.1
Q ss_pred cchHHHHHHHHHHhcC-----CCCcHHHHHHHHhcccccHHHHHHHHHHHHHcCCcceeecCceeEEEe
Q 027236 5 SDNTEAIVLNYVNEQN-----RPLNSQNVADALQKYNLKKAGIQKALDSLADNGKISFKEYGKQKIYIA 68 (226)
Q Consensus 5 g~ea~~~Il~y~~~~n-----rPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~K~~GK~kiY~~ 68 (226)
..+..-.++.++.... .+.|..++...| ++++++|.+.|+.|.+.|+|....-+....+..
T Consensus 5 ~~~~~l~~l~~l~~~~~l~~~~~~s~s~aA~~L---~isq~avSr~I~~LE~~~L~~R~~~~R~~~v~L 70 (230)
T 3cta_A 5 TDDQYYRAIKKIKEAAEASNRAYLTSSKLADML---GISQQSASRIIIDLEKNGYITRTVTKRGQILNI 70 (230)
T ss_dssp --CHHHHHHHHHHHHTTTSSEEECCHHHHHHHH---TSCHHHHHHHHHHHHHTTSEEEEEETTEEEEEE
T ss_pred cHHHHHHHHHHHHHhcccccCCCcCHHHHHHHH---CCCHHHHHHHHHHHHHCCCEEEEEcCCeEEEEE
Confidence 3455566677765543 467788888888 799999999999999999998876653333333
No 295
>2obp_A Putative DNA-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.70A {Ralstonia eutropha} SCOP: a.4.5.71
Probab=66.47 E-value=15 Score=25.95 Aligned_cols=49 Identities=18% Similarity=0.217 Sum_probs=39.4
Q ss_pred HHHHHHHHHHhc-----CCCCcHHHHHHHHhcccccHHHHHHHHHHHHHcCCcceee
Q 027236 8 TEAIVLNYVNEQ-----NRPLNSQNVADALQKYNLKKAGIQKALDSLADNGKISFKE 59 (226)
Q Consensus 8 a~~~Il~y~~~~-----nrPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~K~ 59 (226)
+.=.||.-|... ..|.+..+|.+.+ ++..+++.+.|+.|...|+|....
T Consensus 17 ~q~~vL~~L~~~~~~~~g~~~s~~eLa~~l---~l~~stLsR~l~rLe~~GLV~r~~ 70 (96)
T 2obp_A 17 AIVEVLLVLREAGIENGATPWSLPKIAKRA---QLPMSVLRRVLTQLQAAGLADVSV 70 (96)
T ss_dssp HHHHHHHHHHHHTSSTTCCCCBHHHHHHHH---TCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHHHHhhCCCCCcCHHHHHHHh---CCchhhHHHHHHHHHHCCCEEeec
Confidence 444566655554 3688999999988 799999999999999999999743
No 296
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=66.26 E-value=20 Score=31.89 Aligned_cols=17 Identities=0% Similarity=0.249 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHhc
Q 027236 98 QRKAISKLEGEIRTLQS 114 (226)
Q Consensus 98 l~~~~k~l~~el~~l~~ 114 (226)
+++++.+++..+..+++
T Consensus 402 ~~~~~~~~~~~~~~~~~ 418 (471)
T 3mq9_A 402 LQQELTEAQKGFQDVEA 418 (471)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHH
Confidence 44444444444444433
No 297
>1u5t_A Appears to BE functionally related to SNF7; SNF8P; ESCRT, endosomal, trafficking, protein complex, transport protein; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54 PDB: 1w7p_A
Probab=65.67 E-value=11 Score=30.98 Aligned_cols=59 Identities=15% Similarity=0.191 Sum_probs=48.0
Q ss_pred chHHHHHHHHHHhcCCCCcHHHHHHHHhcccccHHHHHHHHHHHHHcCCcceeecC-ceeEEEe
Q 027236 6 DNTEAIVLNYVNEQNRPLNSQNVADALQKYNLKKAGIQKALDSLADNGKISFKEYG-KQKIYIA 68 (226)
Q Consensus 6 ~ea~~~Il~y~~~~nrPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~K~~G-K~kiY~~ 68 (226)
+.....||++.. .+.-.++.++.+++ |.++.-++.+|+.|+.+|++-.+.-. ....||.
T Consensus 166 ~~D~~~vLe~a~-~~g~vt~~~L~~~l---gW~~~Ra~~~L~~l~~~G~lwvD~q~~~e~~Yw~ 225 (233)
T 1u5t_A 166 TSDQTKILEICS-ILGYSSISLLKANL---GWEAVRSKSALDEMVANGLLWIDYQGGAEALYWD 225 (233)
T ss_dssp CTTHHHHHHTTT-TTSCCBHHHHHHHH---CCCSHHHHHHHHHHHHTTSSEEECSSSSSCEEEC
T ss_pred chHHHHHHHHHH-hcCcCcHHHHHHHh---CCCHHHHHHHHHHHHHCCCEEEeCCCCCccceec
Confidence 566788888775 46677888888887 89999999999999999999999643 2467886
No 298
>2l0k_A Stage III sporulation protein D; SPOIIID, solution structure, DNA binding, bacillus subti transcription factor, transcription; NMR {Bacillus subtilis}
Probab=65.43 E-value=12 Score=26.20 Aligned_cols=37 Identities=16% Similarity=0.292 Sum_probs=31.6
Q ss_pred chHHHHHHHHHHhcCCCCcHHHHHHHHhcccccHHHHHHHHH
Q 027236 6 DNTEAIVLNYVNEQNRPLNSQNVADALQKYNLKKAGIQKALD 47 (226)
Q Consensus 6 ~ea~~~Il~y~~~~nrPys~~di~~~l~~~~v~K~~v~k~L~ 47 (226)
.+-...|++|+.... .++.||...+ ||+.++|-.+|.
T Consensus 6 ~~R~~~I~~~l~~~~--~ti~dlA~~~---gVS~~TVsR~L~ 42 (93)
T 2l0k_A 6 KERTIKIGKYIVETK--KTVRVIAKEF---GVSKSTVHKDLT 42 (93)
T ss_dssp HHHHHHHHHHHHHHC--CCHHHHHHHH---TSCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcC--CCHHHHHHHH---CCCHHHHHHHHc
Confidence 466788999999776 7999998877 899999999984
No 299
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=65.12 E-value=19 Score=23.16 Aligned_cols=18 Identities=28% Similarity=0.377 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 027236 121 IREKEAQLVKEVKEMENK 138 (226)
Q Consensus 121 l~~~i~~L~~e~~~l~~k 138 (226)
|..+|..|+.++..|..-
T Consensus 42 L~~ei~~L~~e~~~Lk~~ 59 (63)
T 2wt7_A 42 LQTEIANLLKEKEKLEFI 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444445555444443
No 300
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=64.70 E-value=36 Score=25.46 Aligned_cols=32 Identities=16% Similarity=0.205 Sum_probs=22.8
Q ss_pred cCCCCcHHHHHH-----HHhcccccHHHHHHHHHHHH
Q 027236 19 QNRPLNSQNVAD-----ALQKYNLKKAGIQKALDSLA 50 (226)
Q Consensus 19 ~nrPys~~di~~-----~l~~~~v~K~~v~k~L~~Lv 50 (226)
.+|-|+..||.. .|...|++-..+..+|+..-
T Consensus 51 g~R~Y~~~dl~~l~~I~~lr~~G~sL~eIk~~l~~~~ 87 (148)
T 3gpv_A 51 GDRIFNEEALKYLEMILCLKNTGMPIQKIKQFIDWSM 87 (148)
T ss_dssp CCEEBCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred CCeecCHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhh
Confidence 457788888843 34445899999998887543
No 301
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=64.61 E-value=34 Score=24.09 Aligned_cols=64 Identities=25% Similarity=0.357 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----------cCCHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 027236 80 ELNQMKEENAKLQEQLEEQRKAISKLEGEIRTLQS----------NLTLEQIREKEAQLVKEVKEMENKLAKLR 143 (226)
Q Consensus 80 e~~~l~~~i~~l~~~l~~l~~~~k~l~~el~~l~~----------~~t~~el~~~i~~L~~e~~~l~~kL~~l~ 143 (226)
++..+..++..|+.....+..++..+...+..+.. ..+.......+...+.++..+..++..+.
T Consensus 11 ~~~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~l~~~g~~CPvCgs~l~~~~~~~~i~~~~~~l~~l~~~i~~l~ 84 (112)
T 1l8d_A 11 KKTTIEEERNEITQRIGELKNKIGDLKTAIEELKKAKGKCPVCGRELTDEHREELLSKYHLDLNNSKNTLAKLI 84 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECTTTCCEECHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666666666666666666666654 11222233445555555555555555544
No 302
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=64.61 E-value=41 Score=24.95 Aligned_cols=28 Identities=18% Similarity=0.264 Sum_probs=13.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 027236 116 LTLEQIREKEAQLVKEVKEMENKLAKLR 143 (226)
Q Consensus 116 ~t~~el~~~i~~L~~e~~~l~~kL~~l~ 143 (226)
+++.|+...-.+|+..+..++..|+.|.
T Consensus 60 ~s~~E~~~~~~EL~~~l~sie~dLeDLe 87 (130)
T 4dnd_A 60 VGREELDWTTNELRNGLRSIEWDLEDLE 87 (130)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555555554
No 303
>1zhc_A Hypothetical protein HP1242; A-helical protein, unknown function; NMR {Helicobacter pylori}
Probab=64.19 E-value=14 Score=24.88 Aligned_cols=46 Identities=9% Similarity=0.280 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027236 94 QLEEQRKAISKLEGEIRTLQSNLTLEQIREKEAQLVKEVKEMENKLAKL 142 (226)
Q Consensus 94 ~l~~l~~~~k~l~~el~~l~~~~t~~el~~~i~~L~~e~~~l~~kL~~l 142 (226)
.+..|..+...|..+|..+...++... .+..|+.+--.+..+|..+
T Consensus 18 ~f~~L~~eH~~LD~~I~~le~~~~~~~---~l~~LKk~KL~LKDeI~~l 63 (76)
T 1zhc_A 18 HFDKIFEKHNQLDDDIKTAEQQNASDA---EVSHMKKQKLKLKDEIHSM 63 (76)
T ss_dssp THHHHHHHHHHHHHHHHHHHTTCSCHH---HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCChH---HHHHHHHHHHHhHHHHHHH
Confidence 455666666666666666666655444 6666666666666666544
No 304
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=64.12 E-value=14 Score=25.28 Aligned_cols=50 Identities=12% Similarity=0.209 Sum_probs=31.8
Q ss_pred CCCCc--chHHHHHHHHHHhcCCCCcHHHHHHHHhcccccHHHHHHHHHHHHHcCC
Q 027236 1 MAPKS--DNTEAIVLNYVNEQNRPLNSQNVADALQKYNLKKAGIQKALDSLADNGK 54 (226)
Q Consensus 1 M~~kg--~ea~~~Il~y~~~~nrPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~ 54 (226)
||.+. .+-...++..+... .-+|+.+|...+ ||+.++|-.-+...-..|.
T Consensus 1 M~r~~ys~e~k~~~v~~~~~~-~g~s~~~ia~~~---gIs~~tl~rW~~~~~~~g~ 52 (97)
T 2jn6_A 1 MPTKTYSEEFKRDAVALYENS-DGASLQQIANDL---GINRVTLKNWIIKYGSNHN 52 (97)
T ss_dssp CCCCCCCHHHHHHHHHHHTTG-GGSCHHHHHHHH---TSCHHHHHHHHHHHCCCST
T ss_pred CCCCCCCHHHHHHHHHHHHHc-CCChHHHHHHHH---CcCHHHHHHHHHHHhhcCc
Confidence 77543 44444444444322 135777887776 8999999999887766554
No 305
>2o0m_A Transcriptional regulator, SORC family; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Enterococcus faecalis} SCOP: c.124.1.8
Probab=63.97 E-value=1.4 Score=38.11 Aligned_cols=52 Identities=12% Similarity=0.201 Sum_probs=0.0
Q ss_pred chHHHHHHHHHHhcCCCCcHHHHHHHHhcccccHHHHHHHHHHHHHcCCcceeecC
Q 027236 6 DNTEAIVLNYVNEQNRPLNSQNVADALQKYNLKKAGIQKALDSLADNGKISFKEYG 61 (226)
Q Consensus 6 ~ea~~~Il~y~~~~nrPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~K~~G 61 (226)
.+.+..||.+++. +.|-+..+|...| +|++++|.+.|+.|.++|+|..+.+|
T Consensus 19 ~~r~~~iL~~l~~-~~~~t~~eLa~~l---~vs~~Tv~r~l~~Le~~Glv~~~~~g 70 (345)
T 2o0m_A 19 LQERFQILRNIYW-MQPIGRRSLSETM---GITERVLRTETDVLKQLNLIEPSKSG 70 (345)
T ss_dssp --------------------------------------------------------
T ss_pred hHHHHHHHHHHHH-cCCCCHHHHHHHH---CcCHHHHHHHHHHHHHCCCEEEEecc
Confidence 4567789999875 5688988888877 79999999999999999999877665
No 306
>1hsj_A Fusion protein consisting of staphylococcus accessary regulator protein R and maltose...; novel fold for DNA binding; HET: GLC; 2.30A {Escherichia coli} SCOP: a.4.5.28 c.94.1.1
Probab=63.62 E-value=6 Score=35.16 Aligned_cols=58 Identities=22% Similarity=0.258 Sum_probs=45.4
Q ss_pred HHHHHHHHHHhcC-CCCcHHHHHHHHhcccccHHHHHHHHHHHHHcCCcceeecC--ceeEEEe
Q 027236 8 TEAIVLNYVNEQN-RPLNSQNVADALQKYNLKKAGIQKALDSLADNGKISFKEYG--KQKIYIA 68 (226)
Q Consensus 8 a~~~Il~y~~~~n-rPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~K~~G--K~kiY~~ 68 (226)
.+=.||.+|.+.. .|-+..+|...+ ++.+++|..+|+.|.+.|+|.-+.-. +-.++..
T Consensus 405 ~q~~vl~~l~~~~~~~~~~~~l~~~~---~~~~~~~t~~~~~le~~g~v~r~~~~~D~R~~~i~ 465 (487)
T 1hsj_A 405 EEIYILNHILRSESNEISSKEIAKCS---EFKPYYLTKALQKLKDLKLLSKKRSLQDERTVIVY 465 (487)
T ss_dssp HHHHHHHHHHTCSCSEEEHHHHHHSS---CCCHHHHHHHHHHHHTTTTSCCEECCSSSSCCEEE
T ss_pred HHHHHHHHHHhCCCCCcCHHHHHHHH---CCCHHHHHHHHHHHHHCCCEeecCCCCCCCeEEEE
Confidence 3457888887642 789999988877 78999999999999999999887654 2345544
No 307
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=63.57 E-value=20 Score=23.84 Aligned_cols=49 Identities=20% Similarity=0.306 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 027236 79 EELNQMKEENAKLQEQLEEQRKAISKLEGEIRTLQSNLTLEQIREKEAQLV 129 (226)
Q Consensus 79 ee~~~l~~~i~~l~~~l~~l~~~~k~l~~el~~l~~~~t~~el~~~i~~L~ 129 (226)
+++..-+.+|..|++.+..-.+....|..+|-+++ ..+.=|.+.+..|+
T Consensus 25 ~eL~~Ke~eI~~L~e~i~lk~kd~ErLNDEiislN--IENNlL~~rl~~l~ 73 (75)
T 3a7o_A 25 KELKSKEQEIRRLKEVIALKNKNTERLNDELISGT--IENNVLQQKLSDLK 73 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHhcccHHHhhHHHHHhH--HHHHHHHHHHHHHh
Confidence 34445566666677766666666666666666655 33444444444443
No 308
>1yz7_A Probable translation initiation factor 2 alpha subunit; helical domain, alpha-beta domain; 2.26A {Pyrococcus abyssi}
Probab=63.44 E-value=4.4 Score=32.34 Aligned_cols=51 Identities=16% Similarity=0.312 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhCcccccccccchhhchhhh
Q 027236 165 LSQWRKRKRMLRDIWDPIMENSPKNLKEFKEELGIEYDEDVGVSLQSFSDLL 216 (226)
Q Consensus 165 ~~~w~kRkri~~~i~~~i~e~~~~~~k~l~e~lGie~Ded~~v~~~~~~~~~ 216 (226)
..+|++.++. ..++..+++.++.+.+++++.+|+.....||--+..|...+
T Consensus 7 i~~wk~~qkv-~sil~~vAek~~~~~Eely~~i~w~L~~kyG~~ydaFk~av 57 (188)
T 1yz7_A 7 LQEFKRAQKA-ENLLKLAAEKLGKDFETAWREVWVPLEEEWGEVYAAFEDAA 57 (188)
T ss_dssp HHHHHHHHHH-HHHHHHHHHHTTCCHHHHHHHTHHHHHHHHSSHHHHHHHHH
T ss_pred HHHHHHHHHH-HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCcHHHHHHHHH
Confidence 3678888866 88999999999999999999999998888887677766554
No 309
>3ke2_A Uncharacterized protein YP_928783.1; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.50A {Shewanella amazonensis SB2B}
Probab=63.10 E-value=14 Score=27.10 Aligned_cols=59 Identities=19% Similarity=0.168 Sum_probs=44.6
Q ss_pred chHHHHHHHHHHhcCCCCcHHHHHHHHhcccccHHHHHHHHHHHHHcCCcceeec-C---ceeEEEe
Q 027236 6 DNTEAIVLNYVNEQNRPLNSQNVADALQKYNLKKAGIQKALDSLADNGKISFKEY-G---KQKIYIA 68 (226)
Q Consensus 6 ~ea~~~Il~y~~~~nrPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~K~~-G---K~kiY~~ 68 (226)
.=.+..-+-|+.++.|| |+..|...- |+++-++|++|.+|.+-|..+.-.= | .+=+|-+
T Consensus 18 sF~RRLyla~lId~~~~-nvp~L~~~T---GmPRRTiQd~I~aL~elgI~~~FvQ~G~R~n~GyY~I 80 (117)
T 3ke2_A 18 AFLRKLYLAHLMDDARH-NLLSLGKLT---GMPRRTLQDAIASFADIGIEVEFVQDGERHNAGYYRI 80 (117)
T ss_dssp HHHHHHHHHHHHHHSCC-CHHHHHHHH---CCCHHHHHHHHHTGGGGTCEEEEECCTTCCSCCEEEE
T ss_pred HHHHHHHHHHHHhcCCC-CHHHHHHHH---CCCHhHHHHHHHHhhhCCeEEEEEeccccCCCccEEE
Confidence 45677888999999999 987776644 8999999999999997776554331 4 3346655
No 310
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=63.08 E-value=40 Score=24.36 Aligned_cols=59 Identities=19% Similarity=0.327 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhc----c-CCHHHHHHHHHHHHHHHHHHHHHH
Q 027236 81 LNQMKEENAKLQEQLEEQRK---AISKLEGEIRTLQS----N-LTLEQIREKEAQLVKEVKEMENKL 139 (226)
Q Consensus 81 ~~~l~~~i~~l~~~l~~l~~---~~k~l~~el~~l~~----~-~t~~el~~~i~~L~~e~~~l~~kL 139 (226)
+..+..+|+++++++...+. .+.-|+.+....++ . ...+.+..++.+|..++..|..++
T Consensus 40 L~~Kq~~idelk~ei~q~~~~lE~I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql~~Lq~q~ 106 (110)
T 2v4h_A 40 LVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREF 106 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHHHHHHHHH
Confidence 55555555666555555554 33344444444333 1 222444455555555555554444
No 311
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=62.85 E-value=11 Score=19.77 Aligned_cols=23 Identities=30% Similarity=0.455 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 027236 90 KLQEQLEEQRKAISKLEGEIRTL 112 (226)
Q Consensus 90 ~l~~~l~~l~~~~k~l~~el~~l 112 (226)
.|......+++++..++-+++.|
T Consensus 4 rlkqknarlkqeiaaleyeiaal 26 (28)
T 3ra3_B 4 RLKQKNARLKQEIAALEYEIAAL 26 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHHHHh
Confidence 44555556666666666665554
No 312
>2di3_A Bacterial regulatory proteins, GNTR family; helix-turn-helix, transcription; 2.05A {Corynebacterium glutamicum}
Probab=62.84 E-value=7.2 Score=31.45 Aligned_cols=52 Identities=17% Similarity=0.254 Sum_probs=37.3
Q ss_pred chHHHHHHHHHHh----cCCCC-cHHHHHHHHhcccccHHHHHHHHHHHHHcCCcce--eec
Q 027236 6 DNTEAIVLNYVNE----QNRPL-NSQNVADALQKYNLKKAGIQKALDSLADNGKISF--KEY 60 (226)
Q Consensus 6 ~ea~~~Il~y~~~----~nrPy-s~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~--K~~ 60 (226)
+..-+.|.+.+.. -..+. +-.++...+ ||+++.|-++|..|..+|+|.. ...
T Consensus 7 ~~v~~~L~~~I~~g~l~pG~~LpsE~~La~~l---gVSRtpVREAL~~L~~~GlV~~~~~~~ 65 (239)
T 2di3_A 7 ESVMDWVTEELRSGRLKIGDHLPSERALSETL---GVSRSSLREALRVLEALGTISTATGSG 65 (239)
T ss_dssp HHHHHHHHHHHHHTSSCTTCBCCCHHHHHHHH---TCCHHHHHHHHHHHHHHTSEECCSTTS
T ss_pred HHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHH---CCCHHHHHHHHHHHHHCCCeEeecccC
Confidence 3444445444443 23345 566777776 8999999999999999999999 544
No 313
>3dpl_C Cullin-5; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} PDB: 3dqv_C
Probab=62.70 E-value=73 Score=27.73 Aligned_cols=60 Identities=18% Similarity=0.280 Sum_probs=43.6
Q ss_pred HHHHHHHHHhc-CCCCcHHHHHHHHhcccccHHHHHHHHHHHHHc-----CCccee-------ecCceeEEEeecC
Q 027236 9 EAIVLNYVNEQ-NRPLNSQNVADALQKYNLKKAGIQKALDSLADN-----GKISFK-------EYGKQKIYIARQD 71 (226)
Q Consensus 9 ~~~Il~y~~~~-nrPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~-----g~i~~K-------~~GK~kiY~~~Q~ 71 (226)
+..||-.|.+. +..+|+.+|...+ |++...+.++|++|+.- +.+... .+....+|+.|.+
T Consensus 201 Qa~ILllFn~~~~~~lt~~ei~~~t---~i~~~~L~r~L~sL~~~~k~k~~iL~~~~~~~~~~~~~~~d~f~~N~~ 273 (382)
T 3dpl_C 201 QLAVLFAWNQRPREKISFENLKLAT---ELPDAELRRTLWSLVAFPKLKRQVLLYEPQVNSPKDFTEGTLFSVNQE 273 (382)
T ss_dssp HHHHHGGGTTCTTCCEEHHHHHHHH---CCCHHHHHHHHHHHHCCTTCSSCSEEESSCCSSGGGCCTTCEEEECTT
T ss_pred HHHHHHHhccCCCCcCcHHHHHHHH---CcCHHHHHHHHHHHhcccchhcceeeecCCccccCcCCCCCEEEEcCC
Confidence 56778788775 4789999998877 89999999999999874 333322 2333457777765
No 314
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=62.56 E-value=17 Score=19.81 Aligned_cols=25 Identities=24% Similarity=0.408 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 027236 81 LNQMKEENAKLQEQLEEQRKAISKL 105 (226)
Q Consensus 81 ~~~l~~~i~~l~~~l~~l~~~~k~l 105 (226)
+..+..+|..|..++..++=++..|
T Consensus 4 iaalkqeiaalkkeiaalkfeiaal 28 (33)
T 4dzn_A 4 IAALKQEIAALKKEIAALKFEIAAL 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444555444444444443
No 315
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=62.28 E-value=13 Score=24.70 Aligned_cols=22 Identities=27% Similarity=0.413 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 027236 121 IREKEAQLVKEVKEMENKLAKL 142 (226)
Q Consensus 121 l~~~i~~L~~e~~~l~~kL~~l 142 (226)
+..+...|...+..|..++..|
T Consensus 48 l~~en~~Lr~~i~~L~~El~~l 69 (70)
T 1gd2_E 48 TTLENDQLRQKVRQLEEELRIL 69 (70)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHc
Confidence 4555666666666666666544
No 316
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=61.93 E-value=39 Score=30.03 Aligned_cols=91 Identities=16% Similarity=0.210 Sum_probs=57.9
Q ss_pred HHHHHHHhcCCCCcHHHHHHHHhcccccHHHHHHHHHHHHHcCCcceeecCceeEEEeecCCCCCCCHHHHHHHHHHHHH
Q 027236 11 IVLNYVNEQNRPLNSQNVADALQKYNLKKAGIQKALDSLADNGKISFKEYGKQKIYIARQDQFDIPNSEELNQMKEENAK 90 (226)
Q Consensus 11 ~Il~y~~~~nrPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~K~~GK~kiY~~~Q~~~~~~~~ee~~~l~~~i~~ 90 (226)
.|-+-+...+-+..+..|...-. ..-.++.-++.|-.+---.+|.+|+ . +.++...+..+...
T Consensus 13 ~~~~~~~~r~~~~~~~~~~~~~~----~~r~~~~~~~~l~~~~n~~sk~i~~-----~--------~~~~~~~l~~~~~~ 75 (421)
T 1ses_A 13 VFHRAIREKGVALDLEALLALDR----EVQELKKRLQEVQTERNQVAKRVPK-----A--------PPEEKEALIARGKA 75 (421)
T ss_dssp HHHHHHHHHTCCCCHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHSSS-----S--------CHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcCHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHh-----h--------ccccHHHHHHHHHH
Confidence 34444444444444333333221 2456666777777777777888886 1 14566677788888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCH
Q 027236 91 LQEQLEEQRKAISKLEGEIRTLQSNLTL 118 (226)
Q Consensus 91 l~~~l~~l~~~~k~l~~el~~l~~~~t~ 118 (226)
+.+++..++.+..++++++..+...++|
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~ipN 103 (421)
T 1ses_A 76 LGEEAKRLEEALREKEARLEALLLQVPL 103 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 8888888888888888888876654333
No 317
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=61.88 E-value=44 Score=24.41 Aligned_cols=19 Identities=26% Similarity=0.427 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 027236 123 EKEAQLVKEVKEMENKLAK 141 (226)
Q Consensus 123 ~~i~~L~~e~~~l~~kL~~ 141 (226)
..+.+|+.+|..|..+|..
T Consensus 71 ~~vqeLqgEI~~Lnq~Lq~ 89 (121)
T 3mq7_A 71 KKVEELEGEITTLNHKLQD 89 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3456666666666665544
No 318
>3f2g_A Alkylmercury lyase; MERB, organomercurial lyase, mercury resistance, mercuric resistance, plasmid; 1.78A {Escherichia coli} PDB: 3f2h_A 3fn8_A 1s6l_A 3f0o_A 3f0p_A 3f2f_A
Probab=61.69 E-value=8.9 Score=31.34 Aligned_cols=44 Identities=18% Similarity=0.324 Sum_probs=35.0
Q ss_pred HHHHHHHHhcCCCCcHHHHHHHHhcccccHHHHHHHHHHHH-----HcCCcce
Q 027236 10 AIVLNYVNEQNRPLNSQNVADALQKYNLKKAGIQKALDSLA-----DNGKISF 57 (226)
Q Consensus 10 ~~Il~y~~~~nrPys~~di~~~l~~~~v~K~~v~k~L~~Lv-----~~g~i~~ 57 (226)
-.||..|- ..||.+..++...+ |++...|..+|..|- ++|.|+.
T Consensus 25 ~~llr~la-~Grpv~~~~LA~~~---g~~~~~v~~~L~~l~~~~~D~~G~Ivg 73 (220)
T 3f2g_A 25 VPLLRELA-KGRPVSRTTLAGIL---DWPAERVAAVLEQATSTEYDKDGNIIG 73 (220)
T ss_dssp HHHHHHHT-TTSCBCHHHHHHHH---TCCHHHHHHHHHHCTTCEECTTSCEEE
T ss_pred HHHHHHHh-cCCCCCHHHHHHHh---CcCHHHHHHHHHhCCcEEECCCCCEEE
Confidence 35666666 99999999998876 899999999999997 4566644
No 319
>3cuq_A Vacuolar-sorting protein SNF8; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_A
Probab=61.43 E-value=20 Score=29.49 Aligned_cols=60 Identities=13% Similarity=0.204 Sum_probs=47.8
Q ss_pred chHHHHHHHHHHhcCCCCcHHHHHHHHhcccccHHHHHHHHHHHHHcCCcceeec-CceeEEEee
Q 027236 6 DNTEAIVLNYVNEQNRPLNSQNVADALQKYNLKKAGIQKALDSLADNGKISFKEY-GKQKIYIAR 69 (226)
Q Consensus 6 ~ea~~~Il~y~~~~nrPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~K~~-GK~kiY~~~ 69 (226)
+.....||++.. .+.-.++.++.+++ +.++.-++.+|+.|+.+|++-.+.- +.-..||..
T Consensus 153 ~~D~~~vLela~-~~g~vt~~~L~~~l---~W~~~Ra~~~L~~l~~~GllwvD~q~~ge~~Yw~P 213 (234)
T 3cuq_A 153 NMDHTVVLQLAE-KNGYVTVSEIKASL---KWETERARQVLEHLLKEGLAWLDLQAPGEAHYWLP 213 (234)
T ss_dssp CHHHHHHHHHHT-TTSEECHHHHHHHH---TCCHHHHHHHHHHHHHHTSCEEESSSSSSCEEECT
T ss_pred chHHHHHHHHHH-hcCcCcHHHHHHHh---CCCHHHHHHHHHHHHhCCCEEEeCCCCCcceeecc
Confidence 566778888875 56677888888777 8999999999999999999999953 334568764
No 320
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=61.43 E-value=29 Score=24.13 Aligned_cols=67 Identities=21% Similarity=0.261 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHH--HcCCcceeecCceeEEEeecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027236 39 KAGIQKALDSLA--DNGKISFKEYGKQKIYIARQDQFDIPNSEELNQMKEENAKLQEQLEEQRKAISKLEGEIRTLQ 113 (226)
Q Consensus 39 K~~v~k~L~~Lv--~~g~i~~K~~GK~kiY~~~Q~~~~~~~~ee~~~l~~~i~~l~~~l~~l~~~~k~l~~el~~l~ 113 (226)
+.....+++.|. +++.-+.+.+|..=|-.. . ++....+...+..+...+..+...+..++.++..+.
T Consensus 31 ~~e~~~~~~EL~~l~~d~~vy~~iG~vfv~~~----~----~e~~~~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk 99 (107)
T 1fxk_A 31 INETQKALEELSRAADDAEVYKSSGNILIRVA----K----DELTEELQEKLETLQLREKTIERQEERVMKKLQEMQ 99 (107)
T ss_dssp HHHHHHHHHHHHHSCTTCCEEEEETTEEEEEC----H----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCchHHHHHhHHHHhcc----H----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444443 245557788885433222 1 244566667777777777777666666666666554
No 321
>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T
Probab=61.39 E-value=28 Score=24.37 Aligned_cols=54 Identities=6% Similarity=0.200 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHH
Q 027236 81 LNQMKEENAKLQEQLEEQRKAISKLEGEIRTLQSNLTLEQIREKEAQLVKEVKEMENKL 139 (226)
Q Consensus 81 ~~~l~~~i~~l~~~l~~l~~~~k~l~~el~~l~~~~t~~el~~~i~~L~~e~~~l~~kL 139 (226)
..++..-+.+|++.+..|.+.+.-.+.. .......-..-+.+++.++..++..+
T Consensus 38 ~~El~~~l~el~e~l~DL~~SI~i~e~~-----~~~EI~~Rk~~v~~l~~~i~~lk~~~ 91 (95)
T 2c5k_T 38 EEEIQDILKDVEETIVDLDRSIIVMKRD-----ENEDVSGREAQVKNIKQQLDALKLRF 91 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTS-----TTCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555554444333 22222444455556666666555554
No 322
>1lq7_A Alpha3W; three helix bundle, de novo protein; NMR {} SCOP: k.9.1.1
Probab=61.32 E-value=27 Score=21.88 Aligned_cols=45 Identities=22% Similarity=0.385 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Q 027236 95 LEEQRKAISKLEGEIRTLQSNLTLEQIREKEAQLVKEVKEMENKLAKLRGGV 146 (226)
Q Consensus 95 l~~l~~~~k~l~~el~~l~~~~t~~el~~~i~~L~~e~~~l~~kL~~l~~~~ 146 (226)
+..+...++.|+.....|-...- |++|+....++..+++.|-.+.
T Consensus 4 vkaleekvkaleekvkalggggr-------ieelkkkweelkkkieelgggg 48 (67)
T 1lq7_A 4 VKALEEKVKALEEKVKALGGGGR-------IEELKKKWEELKKKIEELGGGG 48 (67)
T ss_dssp HHHHHHHHHHHHHHHHHSCCSSS-------HHHHHHHHHHHHHHHHHTTSSS
T ss_pred hHHHHHHHHHHHHHHHHhcCCcc-------HHHHHHHHHHHHHHHHHhCCCc
Confidence 34566677777777777766654 4455566666777777777654
No 323
>1ldj_A Cullin homolog 1, CUL-1; cullin, ROC1, HRT1, zinc ring finger, ligase, ubiquitin, ubiquitination, SCF; 3.00A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 1u6g_A 1ldk_A 1ldk_B 3rtr_A
Probab=61.30 E-value=67 Score=30.71 Aligned_cols=59 Identities=12% Similarity=0.156 Sum_probs=45.8
Q ss_pred HHHHHHHHHhcCCCCcHHHHHHHHhcccccHHHHHHHHHHHHHcCCcceee---------cCceeEEEeecC
Q 027236 9 EAIVLNYVNEQNRPLNSQNVADALQKYNLKKAGIQKALDSLADNGKISFKE---------YGKQKIYIARQD 71 (226)
Q Consensus 9 ~~~Il~y~~~~nrPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~K~---------~GK~kiY~~~Q~ 71 (226)
+..||-.|.+ ...+|+.+|...+ |++...++++|.+|+..|.|..+. +.....|..|.+
T Consensus 591 Qa~iLllFn~-~~~~t~~ei~~~t---~i~~~~l~r~L~~l~k~~iL~~~~~~~~~~~~~~~~~~~f~lN~~ 658 (760)
T 1ldj_A 591 QMAILLQYNT-EDAYTVQQLTDST---QIKMDILAQVLQILLKSKLLVLEDENANVDEVELKPDTLIKLYLG 658 (760)
T ss_dssp HHHHHHGGGS-SSEEEHHHHHHHT---CCCHHHHHHHHHHHHHTTTEECSCTTCCTTTCCCCTTCEEEECSS
T ss_pred HHHHHHHhcC-CCCcCHHHHHHHH---CcCHHHHHHHHHHHHHCCcceeCCCccccccCCCCCCCEEEeecc
Confidence 4667766765 4689998888766 899999999999999988886442 334678888876
No 324
>2dql_A PEX protein; circadian clock associated protein, circadian clock protein; 1.70A {Anabaena SP}
Probab=61.10 E-value=42 Score=23.91 Aligned_cols=60 Identities=18% Similarity=0.253 Sum_probs=42.3
Q ss_pred hHHHH-HHHHHHhcCCCCcHHHHHHHHhc----ccccHHHHHHHHHHHHHcCCcceeec-----Cce-eEEEe
Q 027236 7 NTEAI-VLNYVNEQNRPLNSQNVADALQK----YNLKKAGIQKALDSLADNGKISFKEY-----GKQ-KIYIA 68 (226)
Q Consensus 7 ea~~~-Il~y~~~~nrPys~~di~~~l~~----~~v~K~~v~k~L~~Lv~~g~i~~K~~-----GK~-kiY~~ 68 (226)
+-+-. ||..+.+ .|..--+|...+.. .+++-.++-.+|..|.++|+|..... |.. ++|..
T Consensus 21 ~l~~~~IL~lL~~--~~~~Gyei~~~l~~~~~~~~is~gtLY~~L~rLe~~GlI~~~~~~~~~~~~~rk~Y~L 91 (115)
T 2dql_A 21 EVAICYILYVLLQ--GESYGTELIQQLETEHPTYRLSDTVLYSAIKFLEDNRAITGYWKKLEGRGRPRRMYQV 91 (115)
T ss_dssp HHHHHHHHHHHTT--SCBCHHHHHHHHHHHCTTEECCHHHHHHHHHHHHHTTSEEEEEECCTTCSSCEEEEEE
T ss_pred hHHHHHHHHHHHh--CCCCHHHHHHHHHHHcCCCCCCcchHHHHHHHHHHCCCEEEEeeecCCCCCCcEEEEE
Confidence 34444 8888864 56655566555542 26899999999999999999998742 444 56655
No 325
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=60.96 E-value=13 Score=30.36 Aligned_cols=44 Identities=16% Similarity=0.230 Sum_probs=38.3
Q ss_pred cCCCCcHHHHHHHHhcccccHHHHHHHHHHHHHcCCcceeecCceeE
Q 027236 19 QNRPLNSQNVADALQKYNLKKAGIQKALDSLADNGKISFKEYGKQKI 65 (226)
Q Consensus 19 ~nrPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~K~~GK~ki 65 (226)
.|-|.++.+|.+.+ +++-..|...|..|++.|.|....-|+.+|
T Consensus 175 ~~~~~t~~~la~~~---~l~~~~V~~~l~~L~~~~~v~~~~~~~~~~ 218 (232)
T 2qlz_A 175 LNGRATVEELSDRL---NLKEREVREKISEMARFVPVKIINDNTVVL 218 (232)
T ss_dssp HSSEEEHHHHHHHH---TCCHHHHHHHHHHHTTTSCEEEETTTEEEE
T ss_pred hcCCCCHHHHHHHh---CcCHHHHHHHHHHHHhcCCeEEecCCeEEe
Confidence 46899999999988 799999999999999999999666676654
No 326
>4dci_A Uncharacterized protein; PSI-biology, midwest center for structural genomics, MCSG, S genomics, unknown function; 2.82A {Synechococcus SP}
Probab=60.89 E-value=53 Score=25.05 Aligned_cols=46 Identities=15% Similarity=0.180 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHH
Q 027236 81 LNQMKEENAKLQEQLEEQRKAISKLEGEIRTLQSNLTLEQIREKEA 126 (226)
Q Consensus 81 ~~~l~~~i~~l~~~l~~l~~~~k~l~~el~~l~~~~t~~el~~~i~ 126 (226)
...+...+..+..+|..|.-+.+.+.++++.-...|...+....+.
T Consensus 31 ~~~l~~~i~q~d~elqQLefq~kr~~~e~~~q~~~~~~p~~~~qi~ 76 (150)
T 4dci_A 31 EREISNGIANADQQLAQLEQEGQTVVDQVRRQSANPLDPRVQEQVA 76 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChhHHHHHH
Confidence 4566777777888888888888888777775554444444443333
No 327
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=60.77 E-value=24 Score=23.87 Aligned_cols=18 Identities=28% Similarity=0.543 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 027236 125 EAQLVKEVKEMENKLAKL 142 (226)
Q Consensus 125 i~~L~~e~~~l~~kL~~l 142 (226)
-..|+.+|..|...+..|
T Consensus 52 N~~L~~~v~~L~~E~~~L 69 (78)
T 1gu4_A 52 NERLQKKVEQLSRELSTL 69 (78)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 328
>2a3d_A Protein (de novo three-helix bundle); NMR {Synthetic construct} SCOP: k.9.1.1
Probab=60.74 E-value=30 Score=22.08 Aligned_cols=44 Identities=18% Similarity=0.356 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Q 027236 97 EQRKAISKLEGEIRTLQSNLTLEQIREKEAQLVKEVKEMENKLAKLRGGV 146 (226)
Q Consensus 97 ~l~~~~k~l~~el~~l~~~~t~~el~~~i~~L~~e~~~l~~kL~~l~~~~ 146 (226)
+.++.+..+...|..|-.+ .+++..++++|...++.|..+++..
T Consensus 6 efkqrlaaiktrlqalggs------eaelaafekeiaafeselqaykgkg 49 (73)
T 2a3d_A 6 EFKQRLAAIKTRLQALGGS------EAELAAFEKEIAAFESELQAYKGKG 49 (73)
T ss_dssp HHHHHHHHHHHHHHHCSSG------GGTHHHHHHHHHHHHHHHHHSSSCC
T ss_pred HHHHHHHHHHHHHHHhcCc------HHHHHHHHHHHHHHHHHHHHhccCC
Confidence 4456666666677666654 3567788899999999999998744
No 329
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=60.71 E-value=39 Score=30.00 Aligned_cols=56 Identities=25% Similarity=0.281 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Q 027236 81 LNQMKEENAKLQEQLEEQRKAISKLEGEIRTLQSNLTLEQIREKEAQLVKEVKEMENKLAKLRGG 145 (226)
Q Consensus 81 ~~~l~~~i~~l~~~l~~l~~~~k~l~~el~~l~~~~t~~el~~~i~~L~~e~~~l~~kL~~l~~~ 145 (226)
...|..++.++++++.++..+++.+..+++.+. +++.+.+.+...|...+..++++
T Consensus 5 ~~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~---------~~l~~~~~~rr~l~n~~~~l~gn 60 (412)
T 3u06_A 5 HAALSTEVVHLRQRTEELLRCNEQQAAELETCK---------EQLFQSNMERKELHNTVMDLRDN 60 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHhCCC
Confidence 345666777777777777777777666666554 44555667777788888888754
No 330
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=60.70 E-value=77 Score=29.14 Aligned_cols=60 Identities=20% Similarity=0.175 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCH----------------HHHHHHHHHHHHHHHHHHHHHHHhhC
Q 027236 85 KEENAKLQEQLEEQRKAISKLEGEIRTLQSNLTL----------------EQIREKEAQLVKEVKEMENKLAKLRG 144 (226)
Q Consensus 85 ~~~i~~l~~~l~~l~~~~k~l~~el~~l~~~~t~----------------~el~~~i~~L~~e~~~l~~kL~~l~~ 144 (226)
...|++|+.++.++.+..+....-...+...+.. +||...|.-|+.+|...-..|..|++
T Consensus 63 tkrINELKnqLEdlsKnsKdseqy~k~~~E~Lr~rq~q~~dNdNtynE~S~ELRRrIqyLKekVdnQlsnIrvLQs 138 (562)
T 3ghg_A 63 TNRINKLKNSLFEYQKNNKDSHSLTTNIMEILRGDFSSANNRDNTYNRVSEDLRSRIEVLKRKVIEKVQHIQLLQK 138 (562)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666555544444433333332211 35555666666665555555555554
No 331
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=60.69 E-value=6.1 Score=28.27 Aligned_cols=42 Identities=21% Similarity=0.328 Sum_probs=30.1
Q ss_pred CceeEEEeecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027236 61 GKQKIYIARQDQFDIPNSEELNQMKEENAKLQEQLEEQRKAISKLE 106 (226)
Q Consensus 61 GK~kiY~~~Q~~~~~~~~ee~~~l~~~i~~l~~~l~~l~~~~k~l~ 106 (226)
.+++|.+. ..+|...........+..|+++++.|+..++.++
T Consensus 54 ~~TKVlH~----~~NPa~~a~~~~~~~~e~Lq~E~erLr~~v~~lE 95 (100)
T 1go4_E 54 SRTKVLHM----SLNPTSVARQRLREDHSQLQAECERLRGLLRAME 95 (100)
T ss_dssp TTEEEEEE----SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred ccCeeeee----cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 58899998 4544455566777888888888888877766554
No 332
>3hh0_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, 11183J, structural genomics; 2.67A {Bacillus cereus atcc 14579}
Probab=60.14 E-value=48 Score=24.77 Aligned_cols=87 Identities=13% Similarity=0.174 Sum_probs=55.7
Q ss_pred cCCCCcHHHHHH-----HHhcccccHHHHHHHHHHHHHcCCcceeecCceeEEEeecCCCCCCCHHHHHHHHHHHHHHHH
Q 027236 19 QNRPLNSQNVAD-----ALQKYNLKKAGIQKALDSLADNGKISFKEYGKQKIYIARQDQFDIPNSEELNQMKEENAKLQE 93 (226)
Q Consensus 19 ~nrPys~~di~~-----~l~~~~v~K~~v~k~L~~Lv~~g~i~~K~~GK~kiY~~~Q~~~~~~~~ee~~~l~~~i~~l~~ 93 (226)
.+|-|+..||.. .|...|++-..+..+|+.- . .+ ..+.+..+..+...+.+
T Consensus 39 g~R~Y~~~dl~~l~~I~~lr~~G~sl~~I~~~l~~~------------~----------~~--~~~~~~~L~~q~~~L~~ 94 (146)
T 3hh0_A 39 GHRLYTKDDLYVLQQIQSFKHLGFSLGEIQNIILQR------------D----------IE--TEVFLRQMHFQREVLLA 94 (146)
T ss_dssp SCEEBCHHHHHHHHHHHHHHHTTCCHHHHHHHHTSS------------E----------EE--HHHHHHHHHHHHHHHHH
T ss_pred CCEeeCHHHHHHHHHHHHHHHcCCCHHHHHHHHHcc------------C----------CC--HHHHHHHHHHHHHHHHH
Confidence 467899888843 3333588888887776410 0 01 13445667778888888
Q ss_pred HHHHHHHHHHHHHHHHHHHhcc--CCHHHHHHHHHHHH
Q 027236 94 QLEEQRKAISKLEGEIRTLQSN--LTLEQIREKEAQLV 129 (226)
Q Consensus 94 ~l~~l~~~~k~l~~el~~l~~~--~t~~el~~~i~~L~ 129 (226)
++..++..+..+..-++.+... ++.+.+...+..+-
T Consensus 95 ~i~~l~~~l~~l~~~i~~~~~~~~~~~~~~~~Li~~~~ 132 (146)
T 3hh0_A 95 EQERIAKVLSHMDEMTKKFQKEERVNVALFSSFLQTFI 132 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCSEEEHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHH
Confidence 8888888888887777777654 44455555555443
No 333
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=59.82 E-value=40 Score=23.25 Aligned_cols=55 Identities=11% Similarity=0.161 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc---CCH-HHHHH------HHHHHHHHHHHHHHHHHHhhC
Q 027236 90 KLQEQLEEQRKAISKLEGEIRTLQSN---LTL-EQIRE------KEAQLVKEVKEMENKLAKLRG 144 (226)
Q Consensus 90 ~l~~~l~~l~~~~k~l~~el~~l~~~---~t~-~el~~------~i~~L~~e~~~l~~kL~~l~~ 144 (226)
+|+.+++.|+.+...+..++..+.+. +.. ..+.. ..++++.--..|-.++...++
T Consensus 5 ~L~~~i~~L~~q~~~L~~ei~~~~a~L~~~~~~~~~~~hI~~Lh~YNeiKD~gq~L~g~iA~~rg 69 (85)
T 3viq_B 5 QLESRVHLLEQQKEQLESSLQDALAKLKNRDAKQTVQKHIDLLHTYNEIRDIALGMIGKVAEHEK 69 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC
Confidence 34444455555555555555554442 322 23333 334444444455555555553
No 334
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=59.53 E-value=21 Score=24.11 Aligned_cols=50 Identities=20% Similarity=0.316 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 027236 86 EENAKLQEQLEEQRKAISKLEGEIRTLQSNLTLEQIREKEAQLVKEVKEMENKLAKLRG 144 (226)
Q Consensus 86 ~~i~~l~~~l~~l~~~~k~l~~el~~l~~~~t~~el~~~i~~L~~e~~~l~~kL~~l~~ 144 (226)
..|.+|...++=+...+.+|...+. +-...|..|+.++..|.++|..+..
T Consensus 14 ~Ri~~LE~klAfqE~tIeeLn~~v~---------~Qq~~Id~L~~ql~~L~~rl~~~~~ 63 (78)
T 3efg_A 14 ARLVELETRLSFQEQALTELSEALA---------DARLTGARNAELIRHLLEDLGKVRS 63 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHTC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4555555555444444444443332 3456677778888888887776654
No 335
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=59.31 E-value=43 Score=23.48 Aligned_cols=61 Identities=18% Similarity=0.262 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 027236 81 LNQMKEENAKLQEQLEEQRKAISKLEGEIRTLQSNLTLEQIREKEAQLVKEVKEMENKLAKLR 143 (226)
Q Consensus 81 ~~~l~~~i~~l~~~l~~l~~~~k~l~~el~~l~~~~t~~el~~~i~~L~~e~~~l~~kL~~l~ 143 (226)
+..+..++..|+.+..........++..+..+. -...++...|..|+..+..++..+..+.
T Consensus 4 md~iKkKm~~lk~e~e~a~d~ae~~e~~~k~~e--~~~~~~E~ei~sL~kKiq~lE~eld~~~ 64 (101)
T 3u59_A 4 MEAIKKKMQMLKLDKENAIDRAEQAEADKKQAE--DRCKQLEEEQQGLQKKLKGTEDEVEKYS 64 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhHHHHHHHHHHHHHHHHHHHHHH
No 336
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=59.26 E-value=28 Score=22.89 Aligned_cols=36 Identities=25% Similarity=0.317 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 027236 80 ELNQMKEENAKLQEQLEEQRKAISKLEGEIRTLQSN 115 (226)
Q Consensus 80 e~~~l~~~i~~l~~~l~~l~~~~k~l~~el~~l~~~ 115 (226)
.+..-+..|.+|+.++..-..++.+|+.+|..+.+.
T Consensus 19 ~i~~Kde~I~eLE~~L~~kd~eI~eLr~~LdK~qsV 54 (67)
T 1zxa_A 19 ILMLKEERIKELEKRLSEKEEEIQELKRKLHKCQSV 54 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344556777777777777777777777777777765
No 337
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=59.20 E-value=40 Score=23.13 Aligned_cols=31 Identities=23% Similarity=0.227 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027236 81 LNQMKEENAKLQEQLEEQRKAISKLEGEIRT 111 (226)
Q Consensus 81 ~~~l~~~i~~l~~~l~~l~~~~k~l~~el~~ 111 (226)
+..+...+.........+......+..+.+.
T Consensus 23 l~~lke~l~k~e~~rkele~~~~~l~~ek~~ 53 (89)
T 3bas_A 23 MDKMKEDLAKTERIKKELEEQNVTLLEQKND 53 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333
No 338
>3ic7_A Putative transcriptional regulator; helix-turn-helix, structural genomics, PSI-2, protein struct initiative; 2.82A {Bacteroides thetaiotaomicron}
Probab=59.02 E-value=4.4 Score=29.71 Aligned_cols=52 Identities=8% Similarity=0.026 Sum_probs=32.8
Q ss_pred chHHHHHHHHHHhc-CCC---C-cHHHHHHHHhcccccHHHHHHHHHHHHHcCCcceeec
Q 027236 6 DNTEAIVLNYVNEQ-NRP---L-NSQNVADALQKYNLKKAGIQKALDSLADNGKISFKEY 60 (226)
Q Consensus 6 ~ea~~~Il~y~~~~-nrP---y-s~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~K~~ 60 (226)
+..-+.|.+.+... ..| . |..++... .||+.+.|.++|..|+++|+|.....
T Consensus 14 ~~i~~~l~~~I~~g~~~~G~~lPs~~~La~~---~~vSr~tvr~Al~~L~~~G~i~~~~~ 70 (126)
T 3ic7_A 14 LQIADRICDDILLGQYEEEGRIPSVREYASI---VEVNANTVMRSYEYLQSQEVIYNKRG 70 (126)
T ss_dssp THHHHHHHHHHHTTSSCBTSEECCTTTTTTC---C-CCSGGGHHHHHHHHTTTSEEEETT
T ss_pred HHHHHHHHHHHHhCCCCCCCcCcCHHHHHHH---HCcCHHHHHHHHHHHHHCCcEEEEcC
Confidence 44444455544432 222 2 53344333 48999999999999999999877643
No 339
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=58.80 E-value=38 Score=24.81 Aligned_cols=47 Identities=9% Similarity=0.198 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCH---HHHHHHHHHHHHHHHHHHH
Q 027236 91 LQEQLEEQRKAISKLEGEIRTLQSNLTL---EQIREKEAQLVKEVKEMEN 137 (226)
Q Consensus 91 l~~~l~~l~~~~k~l~~el~~l~~~~t~---~el~~~i~~L~~e~~~l~~ 137 (226)
+..++..|...+..++-.++.+...-+. .++..+++.|..+|..+..
T Consensus 8 ~K~Eiq~L~drLD~~~rKlaaa~~rgd~~~i~qf~~E~~~l~k~I~~lk~ 57 (123)
T 2lf0_A 8 EKNEIKRLSDRLDAIRHQQADLSLVEAADKYAELEKEKATLEAEIARLRE 57 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCTTTCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555556666666666666655332 4444555555555555444
No 340
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=58.36 E-value=32 Score=25.80 Aligned_cols=55 Identities=22% Similarity=0.336 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCH-----HHHHHHHHHHHHHHHHHHHHHHHhhC
Q 027236 90 KLQEQLEEQRKAISKLEGEIRTLQSNLTL-----EQIREKEAQLVKEVKEMENKLAKLRG 144 (226)
Q Consensus 90 ~l~~~l~~l~~~~k~l~~el~~l~~~~t~-----~el~~~i~~L~~e~~~l~~kL~~l~~ 144 (226)
+|.+.+.+-..-+..|...+-.|++.+.+ .|.....+.|.-++..+.++|..|+.
T Consensus 102 ELEADLKEKDsMVe~LT~TiG~LrKELEdEklK~~E~MdSFE~LkvENE~vkerl~mYR~ 161 (167)
T 4gkw_A 102 ELEADLKEKDSMVESLTETIGILRKELENEKLKAAENMDSFEKLSMENENLKEKIAHYRA 161 (167)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHH
Confidence 33333333333333444444444444433 23334556666777777777766664
No 341
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=58.29 E-value=48 Score=24.04 Aligned_cols=29 Identities=24% Similarity=0.338 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027236 85 KEENAKLQEQLEEQRKAISKLEGEIRTLQ 113 (226)
Q Consensus 85 ~~~i~~l~~~l~~l~~~~k~l~~el~~l~ 113 (226)
...|..|+.++..+..+...+..++.++.
T Consensus 19 e~~I~~LR~qid~~~~e~a~l~leldn~~ 47 (119)
T 3ol1_A 19 EEEMRELRRQVDQLTNDKARVEVERDNLA 47 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555555544
No 342
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=58.22 E-value=20 Score=23.20 Aligned_cols=24 Identities=29% Similarity=0.553 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 027236 120 QIREKEAQLVKEVKEMENKLAKLR 143 (226)
Q Consensus 120 el~~~i~~L~~e~~~l~~kL~~l~ 143 (226)
+|..++..|+.++..|..++..|+
T Consensus 34 ~Le~~v~~L~~eN~~L~~ev~~Lr 57 (63)
T 2dgc_A 34 QLEDKVEELLSKNYHLENEVARLK 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444443
No 343
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=58.01 E-value=46 Score=23.41 Aligned_cols=58 Identities=12% Similarity=0.162 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027236 83 QMKEENAKLQEQLEEQRKAISKLEGEIRTLQSNLTLEQIREKEAQLVKEVKEMENKLAKL 142 (226)
Q Consensus 83 ~l~~~i~~l~~~l~~l~~~~k~l~~el~~l~~~~t~~el~~~i~~L~~e~~~l~~kL~~l 142 (226)
.|..+..........++..++.++.+...+... ...|...+..++.++...+++|...
T Consensus 13 ~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~E--i~sL~kk~~~lE~eld~~ee~L~ea 70 (101)
T 3u1c_A 13 MLKLDKENALDRAEQAEADKKAAEERSKQLEDD--IVQLEKQLRVTEDSRDQVLEELHKS 70 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444333333332211 1234444555555555555555443
No 344
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=57.67 E-value=26 Score=29.11 Aligned_cols=42 Identities=17% Similarity=0.292 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 027236 101 AISKLEGEIRTLQSNLTLEQIREKEAQLVKEVKEMENKLAKLRG 144 (226)
Q Consensus 101 ~~k~l~~el~~l~~~~t~~el~~~i~~L~~e~~~l~~kL~~l~~ 144 (226)
.++.++.++..|.. -+.-|.+.+.++++++..++++|+.|++
T Consensus 55 ~l~eL~~ql~~L~a--rNe~L~~~Lk~ar~El~~LkeElerL~s 96 (251)
T 3m9b_A 55 DIHQLEARIDSLAA--RNSKLMETLKEARQQLLALREEVDRLGQ 96 (251)
T ss_dssp HHHHHHHHHHHHTT--THHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 35566666666653 3555788888899999999999988875
No 345
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=57.54 E-value=40 Score=22.61 Aligned_cols=30 Identities=17% Similarity=0.246 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027236 84 MKEENAKLQEQLEEQRKAISKLEGEIRTLQ 113 (226)
Q Consensus 84 l~~~i~~l~~~l~~l~~~~k~l~~el~~l~ 113 (226)
.......+...+.........+..++..|.
T Consensus 18 a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~ 47 (81)
T 1ic2_A 18 ALDRAEQAEADKKAAEERSKQLEDELVALQ 47 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 334444455555555555555555554443
No 346
>3sxy_A Transcriptional regulator, GNTR family; transcription factor, metal-binding, structur genomics, PSI-2, protein structure initiative; 1.65A {Thermotoga maritima} PDB: 3dbw_A 3fms_A*
Probab=56.86 E-value=68 Score=25.03 Aligned_cols=39 Identities=21% Similarity=0.284 Sum_probs=32.4
Q ss_pred CCCCcHHHHHHHHhcccccHHHHHHHHHHHHHcCCcceeecC
Q 027236 20 NRPLNSQNVADALQKYNLKKAGIQKALDSLADNGKISFKEYG 61 (226)
Q Consensus 20 nrPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~K~~G 61 (226)
+.+.+-.++...+ ||+.+.|-++|..|..+|+|.....+
T Consensus 33 G~~L~e~~La~~l---gVSRtpVREAL~~L~~eGlv~~~~~~ 71 (218)
T 3sxy_A 33 GEKLNVRELSEKL---GISFTPVRDALLQLATEGLVKVVPRV 71 (218)
T ss_dssp TCEECHHHHHHHH---TCCHHHHHHHHHHHHHHTSEEEETTT
T ss_pred CCEeCHHHHHHHH---CCCHHHHHHHHHHHHHCCCEEEeCCC
Confidence 3456777777766 89999999999999999999888654
No 347
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=56.41 E-value=19 Score=31.01 Aligned_cols=48 Identities=10% Similarity=0.138 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHH
Q 027236 90 KLQEQLEEQRKAISKLEGEIRTLQSNLTLEQIREKEAQLVKEVKEMENKL 139 (226)
Q Consensus 90 ~l~~~l~~l~~~~k~l~~el~~l~~~~t~~el~~~i~~L~~e~~~l~~kL 139 (226)
.+.+++..++..+.....++..|...+. .+...|.+|+.++..++.++
T Consensus 9 ~~~~~~~~~e~~i~~~~~~i~~L~~~l~--~~~~~i~~l~~~i~~l~~~~ 56 (323)
T 1lwu_C 9 KILEEVRILEQIGVSHDAQIQELSEMWR--VNQQFVTRLQQQLVDIRQTC 56 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444433332211 23455566666665555543
No 348
>3lmm_A Uncharacterized protein; multi-domained alpha-beta protein, structural genomics, PSI- 2, protein structure initiative; 3.00A {Corynebacterium diphtheriae}
Probab=56.14 E-value=22 Score=33.14 Aligned_cols=47 Identities=23% Similarity=0.174 Sum_probs=39.5
Q ss_pred HHHHHHHHHHhcCCCCcHHHHHHHHhcccccHHHHHHHHHHHHH-----cCCccee
Q 027236 8 TEAIVLNYVNEQNRPLNSQNVADALQKYNLKKAGIQKALDSLAD-----NGKISFK 58 (226)
Q Consensus 8 a~~~Il~y~~~~nrPys~~di~~~l~~~~v~K~~v~k~L~~Lv~-----~g~i~~K 58 (226)
-+..||.|+.+ |...|..++...+ +++...+.++|..|++ .|+|...
T Consensus 431 ~~~~iL~~l~~-~~~it~~~la~~l---~~s~~~~~~~L~~L~~~~~~~~glie~~ 482 (583)
T 3lmm_A 431 RIAIVLYLLFQ-RPFITIDVVARGL---QSGKEAARNALEAARQTTVAGAPLIIAH 482 (583)
T ss_dssp HHHHHHHHHHH-SSSBCHHHHHHHH---TSCHHHHHHHHHHHHTCEETTEESEEEE
T ss_pred hHHHHHHHHHH-CCCcCHHHHHHHh---CcCHHHHHHHHHHHHhhhccccceEEEe
Confidence 45689999885 6678999999888 6899999999999999 6777764
No 349
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=56.13 E-value=27 Score=25.61 Aligned_cols=54 Identities=24% Similarity=0.345 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHH
Q 027236 81 LNQMKEENAKLQEQLEEQRKA-----------ISKLEGEIRTLQSNLTLEQIREKEAQLVKEVKEME 136 (226)
Q Consensus 81 ~~~l~~~i~~l~~~l~~l~~~-----------~k~l~~el~~l~~~~t~~el~~~i~~L~~e~~~l~ 136 (226)
+..|..++..|+.++..+..+ +..|+.+|..-+.. ..++......|+.+...++
T Consensus 17 Ie~Lkreie~lk~ele~l~~E~q~~v~ql~~~i~~Le~eL~e~r~~--~q~a~~e~e~Lr~e~~~l~ 81 (120)
T 3i00_A 17 IERLYREISGLKAQLENMKTESQRVVLQLKGHVSELEADLAEQQHL--RQQAADDCEFLRAELDELR 81 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Confidence 555666776666665544333 33333333333211 2344445566666666553
No 350
>3t98_B Nucleoporin NUP58/NUP45; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus} PDB: 2osz_A
Probab=56.06 E-value=49 Score=23.11 Aligned_cols=71 Identities=17% Similarity=0.324 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cCCHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHH
Q 027236 84 MKEENAKLQEQLEEQRKAISKLEGEIRTLQS--NLTLEQIREKEAQLVKEVKEMENKLAKLRGGVTLVKPEDRMAVEEMF 161 (226)
Q Consensus 84 l~~~i~~l~~~l~~l~~~~k~l~~el~~l~~--~~t~~el~~~i~~L~~e~~~l~~kL~~l~~~~~~vs~ee~~~~~~~~ 161 (226)
....+.+...++...+..+..++.-|..+.+ ..|..+|..-+..+-+-.-.|-+++..+. ++++.++..|
T Consensus 10 F~~lv~~fe~rL~~Yr~~IeelE~~L~s~s~~~~~Tpq~L~~~l~~~h~~FiaLAa~l~~lH--------~~V~~~Ke~Y 81 (93)
T 3t98_B 10 FRVLVQQFEVQLQQYRQQIEELENHLATQANNSHITPQDLSMAMQKIYQTFVALAAQLQSIH--------ENVKVLKEQY 81 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHH
Confidence 3466777788888888888888887777665 46678888888887777778888877765 3466677777
Q ss_pred H
Q 027236 162 L 162 (226)
Q Consensus 162 ~ 162 (226)
.
T Consensus 82 l 82 (93)
T 3t98_B 82 L 82 (93)
T ss_dssp H
T ss_pred H
Confidence 5
No 351
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=54.53 E-value=26 Score=24.23 Aligned_cols=28 Identities=25% Similarity=0.393 Sum_probs=18.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 027236 117 TLEQIREKEAQLVKEVKEMENKLAKLRG 144 (226)
Q Consensus 117 t~~el~~~i~~L~~e~~~l~~kL~~l~~ 144 (226)
.|..|..+|.+|+.++..|..-|..+.+
T Consensus 51 EN~~Lr~~v~~L~~E~~~Lr~ll~~~p~ 78 (87)
T 1hjb_A 51 ENERLQKKVEQLSRELSTLRNLFKQLPE 78 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCcH
Confidence 4667777888888888888877765543
No 352
>2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein-protein metal transport, hydrolase; HET: NAG; 2.91A {Streptococcus pneumoniae} SCOP: h.4.19.1
Probab=54.36 E-value=63 Score=23.87 Aligned_cols=53 Identities=19% Similarity=0.265 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 027236 119 EQIREKEAQLVKEVKEMENKLAKLRGGVTLVKPEDRMAVEEMFLEKLSQWRKRK 172 (226)
Q Consensus 119 ~el~~~i~~L~~e~~~l~~kL~~l~~~~~~vs~ee~~~~~~~~~~~~~~w~kRk 172 (226)
++|...|..|+.++..++..+..+... ..+.+.....++.....-..+.-++.
T Consensus 64 eeL~~ki~eL~~kvA~le~e~~~~e~~-~~~~~~~~e~le~~la~KkAEleKtq 116 (125)
T 2pms_C 64 EELSDKIDELDAEIAKLEDQLKAAEEN-NNVEDYFKEGLEKTIAAKKAELEKTE 116 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCCC-----CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHhc-ccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 688889999999999999999888752 23455555556555544444444443
No 353
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=54.20 E-value=46 Score=22.20 Aligned_cols=49 Identities=12% Similarity=0.159 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCH--HHHHHHHHHHHHHHHHH
Q 027236 87 ENAKLQEQLEEQRKAISKLEGEIRTLQSNLTL--EQIREKEAQLVKEVKEM 135 (226)
Q Consensus 87 ~i~~l~~~l~~l~~~~k~l~~el~~l~~~~t~--~el~~~i~~L~~e~~~l 135 (226)
++..+..+...|+..+..++..|...+..-.. .|+..-++.|-.+|.+|
T Consensus 8 kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld~KI~eL 58 (72)
T 3cve_A 8 KLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILDGKIFEL 58 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 33444444444444444444444443332111 34444444444444433
No 354
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=54.20 E-value=44 Score=33.70 Aligned_cols=25 Identities=20% Similarity=0.343 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 027236 79 EELNQMKEENAKLQEQLEEQRKAIS 103 (226)
Q Consensus 79 ee~~~l~~~i~~l~~~l~~l~~~~k 103 (226)
.++..+..++.++++.+..++..+.
T Consensus 857 ~El~~L~~eL~el~~~L~~le~~l~ 881 (1184)
T 1i84_S 857 EEMQAKDEELQRTKERQQKAEAELK 881 (1184)
T ss_dssp HHCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555544444444433333
No 355
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=54.12 E-value=21 Score=24.07 Aligned_cols=19 Identities=16% Similarity=0.232 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 027236 124 KEAQLVKEVKEMENKLAKL 142 (226)
Q Consensus 124 ~i~~L~~e~~~l~~kL~~l 142 (226)
++..|+.++..|+.+|..|
T Consensus 62 e~~~L~~~~~~L~~~l~~L 80 (83)
T 1nkp_B 62 DIDDLKRQNALLEQQVRAL 80 (83)
T ss_dssp HHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3444445555555555444
No 356
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=54.01 E-value=34 Score=27.69 Aligned_cols=65 Identities=17% Similarity=0.209 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027236 78 SEELNQMKEENAKLQEQLEEQRKAISKLEGEIRTLQSNLTLEQIREKEAQLVKEVKEMENKLAKL 142 (226)
Q Consensus 78 ~ee~~~l~~~i~~l~~~l~~l~~~~k~l~~el~~l~~~~t~~el~~~i~~L~~e~~~l~~kL~~l 142 (226)
.+++..+..++..|++++.+++..+..+.+++.+++.....+-.....-.++.-+..|-.-+..|
T Consensus 58 ~~e~~~l~~~l~~l~~e~~el~d~~lR~~AEfeN~RkR~~rE~e~~~~~a~e~~~~~LLpVlDnl 122 (213)
T 4ani_A 58 AEELAAAKAQIAELEAKLSEMEHRYLRLYADFENFRRRTRQEMEAAEKYRAQSLASDLLPVLDNF 122 (213)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 35677788888888888888888888888888887765433333333333333333443333333
No 357
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=53.99 E-value=14 Score=26.58 Aligned_cols=28 Identities=29% Similarity=0.361 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 027236 89 AKLQEQLEEQRKAISKLEGEIRTLQSNL 116 (226)
Q Consensus 89 ~~l~~~l~~l~~~~k~l~~el~~l~~~~ 116 (226)
..|++++..++.++..+++++..|++.|
T Consensus 10 ~~l~~~~~~l~~~i~~lkeel~~L~~~P 37 (109)
T 2wg5_A 10 KQLEDKVEELLSKNYHLENEVARLRSPP 37 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 3455555555555555555555555544
No 358
>3u5c_K 40S ribosomal protein S10-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_K
Probab=53.90 E-value=11 Score=27.11 Aligned_cols=59 Identities=19% Similarity=0.285 Sum_probs=40.7
Q ss_pred hHHHHHHHHHHhcCCCCcHHHHHHHHhcc---cccHHHHHHHHHHHHHcCCcceeecCceeEEEe
Q 027236 7 NTEAIVLNYVNEQNRPLNSQNVADALQKY---NLKKAGIQKALDSLADNGKISFKEYGKQKIYIA 68 (226)
Q Consensus 7 ea~~~Il~y~~~~nrPys~~di~~~l~~~---~v~K~~v~k~L~~Lv~~g~i~~K~~GK~kiY~~ 68 (226)
.-+..|++||-+..=-..-+|. +++++ .|+.=.|.++|+||...|.|. ..|.=+-+||+
T Consensus 6 ~~r~~IYe~LFkEGV~vakKD~--~~~kH~el~vpNL~Vik~mqSLkSrGyVk-eqFaWrh~Yw~ 67 (105)
T 3u5c_K 6 EDRNKIHQYLFQEGVVVAKKDF--NQAKHEEIDTKNLYVIKALQSLTSKGYVK-TQFSWQYYYYT 67 (105)
T ss_dssp HHHHHHHHHHHHHSEEECCSCS--CCSSCSSSSSCHHHHHHHHHHHHHTSSEE-EECTTTCCEEE
T ss_pred hhHHHHHHHHhhCCcEEEEcCC--CCCCCCccCccchhHHHHHhcccccceec-cEecceEEEEE
Confidence 3567888888765432222333 23332 588889999999999999854 56777778888
No 359
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=53.89 E-value=59 Score=31.72 Aligned_cols=74 Identities=8% Similarity=0.153 Sum_probs=48.7
Q ss_pred cCceeEEEeecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhccCCH--HHHHHHHHHHHHHHHH
Q 027236 60 YGKQKIYIARQDQFDIPNSEELNQMKEENAKLQEQLEEQRKAISKLEGEIRT---LQSNLTL--EQIREKEAQLVKEVKE 134 (226)
Q Consensus 60 ~GK~kiY~~~Q~~~~~~~~ee~~~l~~~i~~l~~~l~~l~~~~k~l~~el~~---l~~~~t~--~el~~~i~~L~~e~~~ 134 (226)
.+...+|.......+ ...++..|..++..+..++..++..|.+ +.+.|.. ++-.+++++++.++..
T Consensus 783 ~~~~~~~~~~~~~~d---------~~~~~~rl~k~~~~~~~~~~~~~~~l~~~~f~~~ap~~~~~~~~~~~~~~~~~~~~ 853 (862)
T 1gax_A 783 MPRVTARMPLEGLLD---------VEEWRRRQEKRLKELLALAERSQRKLASPGFREKAPKEVVEAEEARLKENLEQAER 853 (862)
T ss_dssp CSSEEEEEECCSCCC---------HHHHHHHHHHHHHHHHHHHHHHHHHHTSTTTSSSSCTTHHHHHHHHHHHHHHHHHH
T ss_pred cCCcEEEEEeccccC---------HHHHHHHHHHHHHHHHHHHHHHHhhccCchhhhhCCHHHHHHHHHHHHHHHHHHHH
Confidence 355677776333222 2455666777777778888888777776 3344444 5556677888888888
Q ss_pred HHHHHHHh
Q 027236 135 MENKLAKL 142 (226)
Q Consensus 135 l~~kL~~l 142 (226)
++++|..|
T Consensus 854 ~~~~~~~~ 861 (862)
T 1gax_A 854 IREALSQI 861 (862)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHhc
Confidence 88888765
No 360
>2qq9_A Diphtheria toxin repressor; regulator, DTXR, helix-turn-helix, metal ION, ACT DNA-binding, ferrous iron, transcription; 1.71A {Corynebacterium diphtheriae} PDB: 2tdx_A 1ddn_A 1g3t_A 1g3s_A 1g3w_A 2qqa_A 2qqb_A 2dtr_A 1bi0_A 1bi2_A 1bi3_A 1dpr_A 1bi1_A 1fwz_A 1g3y_A 1c0w_A* 3glx_A 1p92_A 1xcv_A 1f5t_A ...
Probab=53.75 E-value=81 Score=24.98 Aligned_cols=50 Identities=12% Similarity=0.205 Sum_probs=37.1
Q ss_pred HHHHHHHHHHh---cCCCCcHHHHHHHHhcccccHHHHHHHHHHHHHcCCcceeec
Q 027236 8 TEAIVLNYVNE---QNRPLNSQNVADALQKYNLKKAGIQKALDSLADNGKISFKEY 60 (226)
Q Consensus 8 a~~~Il~y~~~---~nrPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~K~~ 60 (226)
....+|.++.. .+-+-+..+|...+ +|++++|..+|+.|.++|+|....+
T Consensus 7 ~~e~yL~~i~~l~~~~~~~~~~~la~~l---~vs~~tvs~~l~~Le~~GlV~r~~~ 59 (226)
T 2qq9_A 7 TTEMYLRTIYELEEEGVTPLRARIAERL---EQSGPTVSQTVARMERDGLVVVASD 59 (226)
T ss_dssp HHHHHHHHHHHHHHHTCCCBHHHHHHHH---TCCHHHHHHHHHHHHHTTSEEECTT
T ss_pred HHHHHHHHHHHHhhcCCCccHHHHHHHH---CCCHHHHHHHHHHHHHCCCEEEeCC
Confidence 34455555543 22222448888877 7999999999999999999998766
No 361
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=53.62 E-value=62 Score=23.60 Aligned_cols=25 Identities=16% Similarity=0.401 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 027236 119 EQIREKEAQLVKEVKEMENKLAKLR 143 (226)
Q Consensus 119 ~el~~~i~~L~~e~~~l~~kL~~l~ 143 (226)
.||..+|..|.+++.....+++.|+
T Consensus 74 qeLqgEI~~Lnq~Lq~a~ae~erlr 98 (121)
T 3mq7_A 74 EELEGEITTLNHKLQDASAEVERLR 98 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555554
No 362
>2e1n_A PEX, period extender; circadian clock, DNA binding protein, circadian clock protei; 1.80A {Synechococcus elongatus pcc 7942}
Probab=53.58 E-value=65 Score=23.82 Aligned_cols=60 Identities=22% Similarity=0.243 Sum_probs=42.4
Q ss_pred hHHHHHHHHHHhcCCCCcHHHHHHHHhc----ccccHHHHHHHHHHHHHcCCcceeec-----Cc-eeEEEe
Q 027236 7 NTEAIVLNYVNEQNRPLNSQNVADALQK----YNLKKAGIQKALDSLADNGKISFKEY-----GK-QKIYIA 68 (226)
Q Consensus 7 ea~~~Il~y~~~~nrPys~~di~~~l~~----~~v~K~~v~k~L~~Lv~~g~i~~K~~-----GK-~kiY~~ 68 (226)
...-.||..+.+ .|-.--+|...+.. .+++-.++-.+|..|.++|+|..... |. .++|..
T Consensus 34 ~~~~~IL~lL~~--~~~~Gyei~k~l~~~~~~~~is~gtLYp~L~rLe~~GlI~~~~~~~~~~g~~rk~Y~L 103 (138)
T 2e1n_A 34 LAVCYVLAVLRH--EDSYGTELIQHLETHWPNYRLSDTVLYTALKFLEDEQIISGYWKKVEGRGRPRRMYQL 103 (138)
T ss_dssp HHHHHHHHHHTT--SCEEHHHHHHHHHHHSTTEECCHHHHHHHHHHHHHTTSEEEEEECCTTCSSCEEEEEE
T ss_pred HHHHHHHHHHHh--CCCcHHHHHHHHHHHcCCCCCCccHHHHHHHHHHHCCCEEEEeecccCCCCCcEEEEE
Confidence 334458888864 56666666655542 26899999999999999999998742 44 456665
No 363
>1wi9_A Protein C20ORF116 homolog; helix-turn-helix motif, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.47
Probab=53.29 E-value=43 Score=22.31 Aligned_cols=59 Identities=12% Similarity=0.208 Sum_probs=43.5
Q ss_pred HHHHHHHHhcCCCCcHHHHHHHHhcccccHHHHHHHHHHHHHcCCcceeecCceeEEEeecCC
Q 027236 10 AIVLNYVNEQNRPLNSQNVADALQKYNLKKAGIQKALDSLADNGKISFKEYGKQKIYIARQDQ 72 (226)
Q Consensus 10 ~~Il~y~~~~nrPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~K~~GK~kiY~~~Q~~ 72 (226)
....+|++ .++.-++.|+...+ +++-+.+..-+++|.++|.|..=-=...++=++.++.
T Consensus 10 ~~Fi~yIk-~~Kvv~LedLA~~F---~l~t~~~i~RI~~Le~~g~ltGViDDRGKfIyIs~eE 68 (72)
T 1wi9_A 10 TEFINYIK-KSKVVLLEDLAFQM---GLRTQDAINRIQDLLTEGTLTGVIDDRGKFIYITPSG 68 (72)
T ss_dssp HHHHHHHH-HCSEECHHHHHHHH---CSCHHHHHHHHHHHHHHSSSCEEECTTCCEEECCCSS
T ss_pred HHHHHHHH-HcCeeeHHHHHHHh---CCChHHHHHHHHHHHHCCCeEEEEeCCCCEEEecHHH
Confidence 34455655 67788888887777 7999999999999999999987655555554554433
No 364
>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*
Probab=53.28 E-value=37 Score=28.94 Aligned_cols=57 Identities=21% Similarity=0.269 Sum_probs=47.2
Q ss_pred HHHHHHHHHhcCCCCcHHHHHHHHhcccccHHHHHHHHHHHHHcCCcceeecCceeEEEe
Q 027236 9 EAIVLNYVNEQNRPLNSQNVADALQKYNLKKAGIQKALDSLADNGKISFKEYGKQKIYIA 68 (226)
Q Consensus 9 ~~~Il~y~~~~nrPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~K~~GK~kiY~~ 68 (226)
+--|++.|.+...|.++.+|...+ ++....+...|..|+.-|++....-|..-+|..
T Consensus 30 eLglfd~L~~~~~p~t~~eLA~~~---g~~~~~l~rlLr~L~~~gll~~~~~~~~~~y~~ 86 (353)
T 4a6d_A 30 ELGVFDLLAEAPGPLDVAAVAAGV---RASAHGTELLLDICVSLKLLKVETRGGKAFYRN 86 (353)
T ss_dssp HHTHHHHHHHSSSCBCHHHHHHHH---TCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEE
T ss_pred HcCHHHHHhcCCCCCCHHHHHHhh---CcCHHHHHHHHHHHHHCCCEEEeccCccceeeC
Confidence 344788888888999999998877 788999999999999999998776666666655
No 365
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=53.08 E-value=56 Score=22.94 Aligned_cols=53 Identities=15% Similarity=0.162 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 027236 120 QIREKEAQLVKEVKEMENKLAKLRGGVTLVKPEDRMAVEEMFLEKLSQWRKRK 172 (226)
Q Consensus 120 el~~~i~~L~~e~~~l~~kL~~l~~~~~~vs~ee~~~~~~~~~~~~~~w~kRk 172 (226)
+-...|.+.+..+.+.++=|.++.-....+++.....+...++.|...|.+=+
T Consensus 35 erk~~i~~ie~~l~EA~ell~qMelE~r~~p~~~R~~~~~klr~Yk~dL~~lk 87 (102)
T 1vcs_A 35 EKKQMVANVEKQLEEARELLEQMDLEVREIPPQSRGMYSNRMRSYKQEMGKLE 87 (102)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHhHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444443210001123334444444444445554433
No 366
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=53.05 E-value=51 Score=22.44 Aligned_cols=31 Identities=16% Similarity=0.267 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027236 83 QMKEENAKLQEQLEEQRKAISKLEGEIRTLQ 113 (226)
Q Consensus 83 ~l~~~i~~l~~~l~~l~~~~k~l~~el~~l~ 113 (226)
.+-.++..|+-.+.++..+--+-+..|++.+
T Consensus 23 ~L~qEi~~Lr~kv~elEnErlQyEkKLKsTK 53 (81)
T 3qh9_A 23 ELLQELRHLKIKVEELENERNQYEWKLKATK 53 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 4445666666666666666666555555554
No 367
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=52.76 E-value=30 Score=19.76 Aligned_cols=17 Identities=6% Similarity=0.153 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 027236 85 KEENAKLQEQLEEQRKA 101 (226)
Q Consensus 85 ~~~i~~l~~~l~~l~~~ 101 (226)
..+..+|-.+...|..+
T Consensus 7 E~kVEeLl~~~~~Le~E 23 (36)
T 1kd8_A 7 EAEVEEIESEVWHLENE 23 (36)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHH
Confidence 33333333333333333
No 368
>3sja_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.00A {Saccharomyces cerevisiae} PDB: 3sjc_C
Probab=52.70 E-value=46 Score=21.76 Aligned_cols=48 Identities=13% Similarity=0.171 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCH---HHHHHHHHHHHHHHHHHHHHHH
Q 027236 93 EQLEEQRKAISKLEGEIRTLQSNLTL---EQIREKEAQLVKEVKEMENKLA 140 (226)
Q Consensus 93 ~~l~~l~~~~k~l~~el~~l~~~~t~---~el~~~i~~L~~e~~~l~~kL~ 140 (226)
.+...++.++..+..++....+.-.- +.|..++..|..++..+...|.
T Consensus 6 ~~~~~l~~E~~~lk~E~~stSaQDeFAKWaKL~Rk~DKl~~ele~l~~~l~ 56 (65)
T 3sja_C 6 KKYLAKVKERHELKEFNNSISAQDNYAKWTKNNRKLDSLDKEINNLKDEIQ 56 (65)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34555566666666666666555443 5566666667677666666654
No 369
>1stz_A Heat-inducible transcription repressor HRCA homol; circe element, structural genomics, BSGC structure FUN NIH, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.51 d.110.2.3
Probab=52.51 E-value=24 Score=30.38 Aligned_cols=56 Identities=21% Similarity=0.258 Sum_probs=45.4
Q ss_pred chHHHHHHHH----HHhcCCCCcHHHHHHHHhcccccHHHHHHHHHHHHHcCCcceeecCce
Q 027236 6 DNTEAIVLNY----VNEQNRPLNSQNVADALQKYNLKKAGIQKALDSLADNGKISFKEYGKQ 63 (226)
Q Consensus 6 ~ea~~~Il~y----~~~~nrPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~K~~GK~ 63 (226)
++-+..||++ +..++.|-+..++...+. .+|+.++|-.-|..|.+.|+|.. .+|..
T Consensus 16 ~eR~~~IL~~i~~~yl~~~~pV~s~~La~~~~-l~VS~aTIRrDL~~LE~~GlL~r-~HgsA 75 (338)
T 1stz_A 16 NDRQRKVLYCIVREYIENKKPVSSQRVLEVSN-IEFSSATIRNDMKKLEYLGYIYQ-PHTSA 75 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHCSCBCHHHHHHHSC-CCSCHHHHHHHHHHHHHTTSEEC-CSSCS
T ss_pred HHHHHHHHHHHHHHHHHcCCCccHHHHHHHhC-CCCCHHHHHHHHHHHHHCCCEEE-ccCcc
Confidence 5778888883 334788999999988664 48999999999999999999874 77654
No 370
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=52.13 E-value=24 Score=18.35 Aligned_cols=19 Identities=16% Similarity=0.487 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 027236 92 QEQLEEQRKAISKLEGEIR 110 (226)
Q Consensus 92 ~~~l~~l~~~~k~l~~el~ 110 (226)
..++.+++.++..|..+.+
T Consensus 6 kdevgelkgevralkdevk 24 (27)
T 3v86_A 6 KDEVGELKGEVRALKDEVK 24 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhHHHHHHHHHh
Confidence 3334444444444444433
No 371
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=51.98 E-value=25 Score=22.03 Aligned_cols=27 Identities=19% Similarity=0.331 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 027236 118 LEQIREKEAQLVKEVKEMENKLAKLRG 144 (226)
Q Consensus 118 ~~el~~~i~~L~~e~~~l~~kL~~l~~ 144 (226)
.++|...+..|+.++..|..++..|..
T Consensus 24 ~~~LE~~v~~L~~eN~~L~~~~~~L~~ 50 (55)
T 1dh3_A 24 VKSLENRVAVLENQNKTLIEELKALKD 50 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666677777777777777777764
No 372
>3uun_A Dystrophin; triple helical, cell structure and stability, cytoskeletal, structural protein; 2.30A {Homo sapiens}
Probab=51.65 E-value=55 Score=22.43 Aligned_cols=93 Identities=8% Similarity=0.060 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCC-H---HHHHHHHHHHHHHHHHHHHHHHHhhC-CC-----CCCCHHH----
Q 027236 88 NAKLQEQLEEQRKAISKLEGEIRTLQSNLT-L---EQIREKEAQLVKEVKEMENKLAKLRG-GV-----TLVKPED---- 153 (226)
Q Consensus 88 i~~l~~~l~~l~~~~k~l~~el~~l~~~~t-~---~el~~~i~~L~~e~~~l~~kL~~l~~-~~-----~~vs~ee---- 153 (226)
+..+...+.++..=+...+..|......+. . ..+......+..++...+..+..+.. |. ...++++
T Consensus 4 L~~F~~~l~el~~WL~~~e~~l~~~~~~~~d~~~v~~~l~~h~~l~~ei~~~~~~v~~~~~~g~~L~~~~~~~~~~~~~i 83 (119)
T 3uun_A 4 LDRYQTALEEVLSWLLSAEDTLQAQGEISNDVEVVKDQFHTHEGYMMDLTAHQGRVGNILQLGSKLIGTGKLSEDEETEV 83 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCSCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 445556666666666666666666543322 2 44555666777888777777766643 11 1234443
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027236 154 ---RMAVEEMFLEKLSQWRKRKRMLRDIWD 180 (226)
Q Consensus 154 ---~~~~~~~~~~~~~~w~kRkri~~~i~~ 180 (226)
+..+...|......+..|++...+.+.
T Consensus 84 ~~~l~~l~~rw~~L~~~~~~R~~~Le~aL~ 113 (119)
T 3uun_A 84 QEQMNLLNSRWECLRVASMEKQSNLHRVLM 113 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334566688888888888866665443
No 373
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=51.41 E-value=33 Score=20.01 Aligned_cols=30 Identities=17% Similarity=0.233 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027236 80 ELNQMKEENAKLQEQLEEQRKAISKLEGEI 109 (226)
Q Consensus 80 e~~~l~~~i~~l~~~l~~l~~~~k~l~~el 109 (226)
++..+...+...-+.+..|+++.+.|+.++
T Consensus 7 ~mq~LNdrlAsyidkVR~LE~~N~~Le~~i 36 (39)
T 1gk7_A 7 ELQELNDRFANYIDKVRFLEQQNKILLAEL 36 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555555555544
No 374
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=51.21 E-value=71 Score=23.57 Aligned_cols=14 Identities=21% Similarity=0.439 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHH
Q 027236 125 EAQLVKEVKEMENK 138 (226)
Q Consensus 125 i~~L~~e~~~l~~k 138 (226)
|.+++.++..++..
T Consensus 114 V~~~r~~I~~mk~~ 127 (130)
T 4dnd_A 114 VERMREAVQEMKDH 127 (130)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444443
No 375
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=51.18 E-value=77 Score=25.09 Aligned_cols=33 Identities=27% Similarity=0.462 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027236 82 NQMKEENAKLQEQLEEQRKAISKLEGEIRTLQS 114 (226)
Q Consensus 82 ~~l~~~i~~l~~~l~~l~~~~k~l~~el~~l~~ 114 (226)
..+..++..|..++.....+++.|+.+|+.++.
T Consensus 23 ~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~ 55 (190)
T 4emc_A 23 ANLVNENFVLSEKLDTKATEIKQLQKQIDSLNA 55 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444444444444444444444444443
No 376
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=50.79 E-value=28 Score=24.47 Aligned_cols=11 Identities=36% Similarity=0.359 Sum_probs=4.2
Q ss_pred HHHHHHHHHHH
Q 027236 84 MKEENAKLQEQ 94 (226)
Q Consensus 84 l~~~i~~l~~~ 94 (226)
++..|++|.++
T Consensus 21 kq~~id~lke~ 31 (94)
T 3jsv_C 21 KQELIDKLKEE 31 (94)
T ss_dssp HHHHHHHHHHH
T ss_pred hHHHHHHHHHH
Confidence 33333333333
No 377
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=50.53 E-value=37 Score=21.78 Aligned_cols=24 Identities=25% Similarity=0.318 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 027236 86 EENAKLQEQLEEQRKAISKLEGEI 109 (226)
Q Consensus 86 ~~i~~l~~~l~~l~~~~k~l~~el 109 (226)
.+..+|..+...|+.++..|+.++
T Consensus 30 ~~~~~L~~~N~~L~~~i~~L~~E~ 53 (63)
T 1ci6_A 30 GECKELEKKNEALKERADSLAKEI 53 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333
No 378
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=50.44 E-value=43 Score=22.69 Aligned_cols=16 Identities=19% Similarity=0.462 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 027236 122 REKEAQLVKEVKEMEN 137 (226)
Q Consensus 122 ~~~i~~L~~e~~~l~~ 137 (226)
...|..++.++..++.
T Consensus 32 q~~i~~lE~eL~~~r~ 47 (84)
T 1gk4_A 32 QDTIGRLQDEIQNMKE 47 (84)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 379
>3p9a_A DNA-packaging protein GP3; terminase small subunit, bacteriophage P22, D binding protein; 1.75A {Enterobacteria phage P22}
Probab=50.18 E-value=30 Score=26.76 Aligned_cols=36 Identities=14% Similarity=0.190 Sum_probs=29.3
Q ss_pred chHHHHHHHHHH--hcC----------------------CCCcHHHHHHHHhcccccHHHHHH
Q 027236 6 DNTEAIVLNYVN--EQN----------------------RPLNSQNVADALQKYNLKKAGIQK 44 (226)
Q Consensus 6 ~ea~~~Il~y~~--~~n----------------------rPys~~di~~~l~~~~v~K~~v~k 44 (226)
++--+++.+||. +.| |||++.-+.--| ||+.++..+
T Consensus 26 EeL~~aa~eYFeWcE~Npl~e~k~~sfQG~v~~~~v~k~Rp~TitGLclfl---gis~~Tl~~ 85 (162)
T 3p9a_A 26 EALWAACCEYFEWVEANPLWEMKAFSYQGEVIQEPIAKMRAMTITGLTLFI---DVTLETWRT 85 (162)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEEECCCCCHHHHHHHH---TCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHhchHhhhhhhcccCceeeccccccCcchHHHHHHHH---CCCHHHHHH
Confidence 788899999999 777 999988887766 777766544
No 380
>2hye_C Cullin-4A, CUL-4A; beta propeller, ring finger, zinc finger, propeller cluster, helical repeats, cullin repeats, protein binding; HET: DNA; 3.10A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 4a0k_A* 4a0c_C 4a0l_E*
Probab=49.86 E-value=34 Score=32.81 Aligned_cols=59 Identities=20% Similarity=0.274 Sum_probs=43.6
Q ss_pred HHHHHHHHHhcCCCCcHHHHHHHHhcccccHHHHHHHHHHHHH--cCCcce----eecCceeEEEeecC
Q 027236 9 EAIVLNYVNEQNRPLNSQNVADALQKYNLKKAGIQKALDSLAD--NGKISF----KEYGKQKIYIARQD 71 (226)
Q Consensus 9 ~~~Il~y~~~~nrPys~~di~~~l~~~~v~K~~v~k~L~~Lv~--~g~i~~----K~~GK~kiY~~~Q~ 71 (226)
+..||-.|.+ ...+|+.+|...+ |++...+.++|++|+. .+.+.. +.+....+|..|.+
T Consensus 595 Qa~iLllFn~-~~~lt~~ei~~~t---~i~~~~l~r~L~sL~~~k~~vL~~~p~~~~v~~~d~f~lN~~ 659 (759)
T 2hye_C 595 QTLVLLMFNE-GDGFSFEEIKMAT---GIEDSELRRTLQSLACGKARVLIKSPKGKEVEDGDKFIFNGE 659 (759)
T ss_dssp HHHHHHHTTS-CCCEEHHHHHHHT---CCCHHHHHHHHHTTTTTTTCSEEETTCSSSCCSSCEEEECCC
T ss_pred HHHHHHHhcC-CCCcCHHHHHHHH---CcCHHHHHHHHHHHHccCCceeecCCCCCCCCCCCEEEeecc
Confidence 4667766665 5689999888766 8999999999999994 444542 23445678888776
No 381
>3htu_A Vacuolar protein-sorting-associated protein 25; ESCRT-II, ESCRT-III, VPS20, VPS25, MVB, cytoplasm, nucleus, polymorphism, protein transport; 2.00A {Homo sapiens}
Probab=49.84 E-value=31 Score=23.44 Aligned_cols=52 Identities=15% Similarity=0.299 Sum_probs=38.5
Q ss_pred chHHHHHHHHHHhc---CCCCcHHHHHH--HHhc---ccccHHHHHHHHHHHHHcCCcce
Q 027236 6 DNTEAIVLNYVNEQ---NRPLNSQNVAD--ALQK---YNLKKAGIQKALDSLADNGKISF 57 (226)
Q Consensus 6 ~ea~~~Il~y~~~~---nrPys~~di~~--~l~~---~~v~K~~v~k~L~~Lv~~g~i~~ 57 (226)
+|=-..|++|+.+. |...++=+|.. .-.. +|+....+.+||+-|+.+|+...
T Consensus 8 eeWa~~Iy~Wv~~~G~~~sV~TlyEL~~Gd~t~~~ef~gmd~~~L~kaL~~L~k~gkA~i 67 (79)
T 3htu_A 8 EEWGKLIYQWVSRSGQNNSVFTLYELTNGEDTEDEEFHGLDEATLLRALQALQQEHKAEI 67 (79)
T ss_dssp HHHHHHHHHHHHTTCCSCSEECHHHHHHSSTTTTSTTTTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHHHcCCCCceEEEeeeccCCCCCCCcccCCCHHHHHHHHHHHHHcCCEEE
Confidence 45567899999885 45677666654 1111 48999999999999999997543
No 382
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=49.69 E-value=22 Score=30.89 Aligned_cols=57 Identities=16% Similarity=0.215 Sum_probs=46.1
Q ss_pred HHHHHHH-----HHHhcCCCCcHHHHHHHHhcccccHHHHHHHHHHHHHcCCcceeec-CceeEEE
Q 027236 8 TEAIVLN-----YVNEQNRPLNSQNVADALQKYNLKKAGIQKALDSLADNGKISFKEY-GKQKIYI 67 (226)
Q Consensus 8 a~~~Il~-----y~~~~nrPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~K~~-GK~kiY~ 67 (226)
-++.|++ +.++.++.||..++...+ |+++..+..++..+.++|.+..+.. |....|.
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~l~---~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 86 (403)
T 3ez9_A 24 MSQDIEDQRKEFNQTEYYQTFTRNAVAKLP---KLSRRIVDQAIKEMEEDGYQFNKKQVGNVEQYA 86 (403)
T ss_dssp GHHHHHHHHHHHTTTCCCCCBCHHHHHHST---TCCHHHHHHHHHHHHHTSCCCCEEEETTEEEEC
T ss_pred HHHHHhccccCcCccccCCCcCHHHHHHHh---CCCHHHHHHHHHHHhhcCCCCCcCCCCceeeec
Confidence 3455555 556778999999998877 8999999999999999999988855 7777764
No 383
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=49.54 E-value=73 Score=28.08 Aligned_cols=24 Identities=29% Similarity=0.450 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Q 027236 91 LQEQLEEQRKAISKLEGEIRTLQS 114 (226)
Q Consensus 91 l~~~l~~l~~~~k~l~~el~~l~~ 114 (226)
|+.++.+++.....++.+-+..+-
T Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~ 425 (471)
T 3mq9_A 402 LQQELTEAQKGFQDVEAQAATANH 425 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhcch
Confidence 556666666666666666555543
No 384
>1j1j_A Translin; testis/brain RNA binding protein, ssDNA binding protein, RNA protein, DNA binding protein; 2.20A {Homo sapiens} SCOP: a.118.16.1 PDB: 3qb5_A 3pja_A 1key_A
Probab=49.31 E-value=1.1e+02 Score=25.00 Aligned_cols=85 Identities=15% Similarity=0.163 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhCcc
Q 027236 121 IREKEAQLVKEVKEMENKLAKLRGGVTLVKPEDRMAVEEMFLEKLSQWRKRKRMLRDIWDPIMENSPKNLKEFKEELGIE 200 (226)
Q Consensus 121 l~~~i~~L~~e~~~l~~kL~~l~~~~~~vs~ee~~~~~~~~~~~~~~w~kRkri~~~i~~~i~e~~~~~~k~l~e~lGie 200 (226)
....+.+.+..+.++.+.+..+..-- .+...=+....|.....++.. +..+..|+..+.-.+.+++.+.||+.
T Consensus 66 ~~~~~~~A~~~l~~~~~~~~~L~~~l---~~~~~yrY~~~~s~~lQE~VE----A~~f~~yL~~~~L~t~eev~~~L~~~ 138 (240)
T 1j1j_A 66 IPKRCLKAREHFGTVKTHLTSLKTKF---PAEQYYRFHEHWRFVLQRLVF----LAAFVVYLETETLVTREAVTEILGIE 138 (240)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTS---CGGGHHHHGGGTHHHHHHHHH----HHHHHHHHHHSSCCCHHHHHHHHTCC
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHc---ccchHHHHhccccHHHHHHHH----HHHHHHHHcCCCCCCHHHHHHHhCCC
Confidence 44445555556666666665555321 111222222223333333332 24566777777556789999999986
Q ss_pred ccccc--ccchhhc
Q 027236 201 YDEDV--GVSLQSF 212 (226)
Q Consensus 201 ~Ded~--~v~~~~~ 212 (226)
.+... .|+..+|
T Consensus 139 ~~~~~~f~v~~edY 152 (240)
T 1j1j_A 139 PDREKGFHLDVEDY 152 (240)
T ss_dssp CSSSSSSCCCHHHH
T ss_pred ccccccCcCCHHHH
Confidence 64433 3444444
No 385
>3qao_A LMO0526 protein, MERR-like transcriptional regulator; structural genomics, the center for structural genomics of I diseases, csgid; 1.87A {Listeria monocytogenes}
Probab=49.25 E-value=1.1e+02 Score=25.00 Aligned_cols=70 Identities=14% Similarity=0.210 Sum_probs=51.6
Q ss_pred cCCCCcHHHHHH-----HHhcccccHHHHHHHHHHHHHcCCcceeecCceeEEEeecCCCCCCCHHHHHHHHHHHHHHHH
Q 027236 19 QNRPLNSQNVAD-----ALQKYNLKKAGIQKALDSLADNGKISFKEYGKQKIYIARQDQFDIPNSEELNQMKEENAKLQE 93 (226)
Q Consensus 19 ~nrPys~~di~~-----~l~~~~v~K~~v~k~L~~Lv~~g~i~~K~~GK~kiY~~~Q~~~~~~~~ee~~~l~~~i~~l~~ 93 (226)
.+|-|+..||.. .|...|++-..+..+|+. +. .+....+..++..|.+
T Consensus 38 GyR~Y~~~dl~~L~~I~~lr~~G~sL~eIk~~l~~-------------------------~~--~~~~~~L~~~~~~L~~ 90 (249)
T 3qao_A 38 GYRIYSEKDVDKLQQILFFKELDFPLKKIQQILDD-------------------------PL--FDKNVALDMQRHLLIE 90 (249)
T ss_dssp CCEEBCHHHHHHHHHHHHHHHTTCCHHHHHHHHHC-------------------------TT--CCHHHHHHHHHHHHHH
T ss_pred CCeeeCHHHHHHHHHHHHHHHCCCCHHHHHHHhcc-------------------------Cc--hHHHHHHHHHHHHHHH
Confidence 457889888854 344458999999888851 11 1234567788888988
Q ss_pred HHHHHHHHHHHHHHHHHHHhcc
Q 027236 94 QLEEQRKAISKLEGEIRTLQSN 115 (226)
Q Consensus 94 ~l~~l~~~~k~l~~el~~l~~~ 115 (226)
++..|...+..+...+..+...
T Consensus 91 ~~~~L~~~~~~l~~~i~~~~~~ 112 (249)
T 3qao_A 91 KKQRIETMLATLDLTIKNEKGE 112 (249)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHhcC
Confidence 8888888888888888887764
No 386
>2v9v_A Selenocysteine-specific elongation factor; transcription, protein conformational change, transcription elongation factor SELB; 1.10A {Moorella thermoacetica} SCOP: a.4.5.35 a.4.5.35
Probab=49.24 E-value=69 Score=22.85 Aligned_cols=58 Identities=22% Similarity=0.303 Sum_probs=41.0
Q ss_pred HHHHHHHHHHhcCCCCcHHHHHHHHhcccccHHHHHHHHHHHHHcCCcceeecCceeEEEe
Q 027236 8 TEAIVLNYVNEQNRPLNSQNVADALQKYNLKKAGIQKALDSLADNGKISFKEYGKQKIYIA 68 (226)
Q Consensus 8 a~~~Il~y~~~~nrPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~K~~GK~kiY~~ 68 (226)
..+.|..|+.....++...++.... +.+...+..+|+.|+..|.|.+=.-+...+|+.
T Consensus 3 ~~~~l~~~L~~~~~~~~~~~l~~~~---~l~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~ 60 (135)
T 2v9v_A 3 PEKILAQIIQEHREGLDWQEAATRA---SLSLEETRKLLQSMAAAGQVTLLRVENDLYAIS 60 (135)
T ss_dssp HHHHHHHHHHHCSSCEEHHHHHHHH---TCCHHHHHHHHHHHHHTTCEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHcCcCCCHHHHHHHh---CCCHHHHHHHHHHHHhCCcEEEEecCCCeEEec
Confidence 4567888888776666656665544 778899999999999999966543223444544
No 387
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=49.17 E-value=60 Score=22.10 Aligned_cols=25 Identities=20% Similarity=0.344 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 027236 86 EENAKLQEQLEEQRKAISKLEGEIR 110 (226)
Q Consensus 86 ~~i~~l~~~l~~l~~~~k~l~~el~ 110 (226)
.....|-.++..|+-.+.+++.+--
T Consensus 19 ~~~E~L~qEi~~Lr~kv~elEnErl 43 (81)
T 3qh9_A 19 RKAEELLQELRHLKIKVEELENERN 43 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555554433
No 388
>1lrz_A FEMA, factor essential for expression of methicillin resistance; peptidoglycan, X-RAY crystallography, multiple anomalous dispersion; 2.10A {Staphylococcus aureus} SCOP: a.2.7.4 d.108.1.4 d.108.1.4
Probab=49.07 E-value=63 Score=28.32 Aligned_cols=52 Identities=17% Similarity=0.213 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027236 88 NAKLQEQLEEQRKAISKLEGEIRTLQSNLTLEQIREKEAQLVKEVKEMENKLAKL 142 (226)
Q Consensus 88 i~~l~~~l~~l~~~~k~l~~el~~l~~~~t~~el~~~i~~L~~e~~~l~~kL~~l 142 (226)
+..+++++..+..++..++..+ ...|.+.....++.++++++..++.++...
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~ 300 (426)
T 1lrz_A 249 IKELNEERDILNKDLNKALKDI---EKRPENKKAHNKRDNLQQQLDANEQKIEEG 300 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH---HHCTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh---hhCcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555444 244555666677777777777766666554
No 389
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=48.67 E-value=25 Score=19.76 Aligned_cols=23 Identities=30% Similarity=0.487 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 027236 120 QIREKEAQLVKEVKEMENKLAKL 142 (226)
Q Consensus 120 el~~~i~~L~~e~~~l~~kL~~l 142 (226)
+|...+++|-.++.+|+.....|
T Consensus 4 QLE~kVEeLl~~n~~Le~EV~RL 26 (33)
T 3m48_A 4 QLEAKVEELLSKNWNLENEVARL 26 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHH
Confidence 34444444444444444444443
No 390
>2v7f_A RPS19, RPS19E SSU ribosomal protein S19E; diamond blackfan anemia small ribosomal subunit; 1.15A {Pyrococcus abyssi} SCOP: a.4.5.84
Probab=48.66 E-value=85 Score=23.70 Aligned_cols=38 Identities=21% Similarity=0.260 Sum_probs=29.7
Q ss_pred CCcHHHHHHHHhc-----------ccccHHHHHHHHHHHHHcCCcceee
Q 027236 22 PLNSQNVADALQK-----------YNLKKAGIQKALDSLADNGKISFKE 59 (226)
Q Consensus 22 Pys~~di~~~l~~-----------~~v~K~~v~k~L~~Lv~~g~i~~K~ 59 (226)
|-...++...+.. ..++.+.|-++|+.|...|+|....
T Consensus 67 ~~G~~~La~~~gg~k~~g~~p~~~~~vSr~tVR~AL~~Le~~GlV~~~~ 115 (150)
T 2v7f_A 67 PVGIERLRTYYGGRKNRGHAPERFYKAGGSIIRKALQQLEAAGFVEKVP 115 (150)
T ss_dssp SBCHHHHHHHHCC----CCCTTSCCCHHHHHHHHHHHHHHHTTSEEEET
T ss_pred CCCHHHHHHHHCCCccCCcCCccccccchHHHHHHHHHHHHCCCEEEeC
Confidence 6676666666630 0199999999999999999998764
No 391
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=48.53 E-value=68 Score=22.53 Aligned_cols=84 Identities=13% Similarity=0.092 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHH
Q 027236 86 EENAKLQEQLEEQRKAISKLEGEIRTLQSNLTLEQIREKEAQLVKEVKEMENKLAKLRGGVTLVKPEDRMAVEEMFLEKL 165 (226)
Q Consensus 86 ~~i~~l~~~l~~l~~~~k~l~~el~~l~~~~t~~el~~~i~~L~~e~~~l~~kL~~l~~~~~~vs~ee~~~~~~~~~~~~ 165 (226)
.-+.....+...+-.++... +..+......++-...|.+.+..+.+.++=|.++.-....+++.....+...++.|.
T Consensus 15 elFe~YE~df~~l~~~i~~k---l~~i~~~~~~e~rk~~i~~ie~~ldEA~eLl~qMelE~r~~p~s~R~~~~~klr~Yk 91 (102)
T 2qyw_A 15 EHFEKLHEIFRGLLEDLQGV---PERLLGTAGTEEKKKLVRDFDEKQQEANETLAEMEEELRYAPLTFRNPMMSKLRNYR 91 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---HHHHHTCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHhcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 34444444444444443333 333332223367777788888888888888877642111235777778888888777
Q ss_pred HHHHHHH
Q 027236 166 SQWRKRK 172 (226)
Q Consensus 166 ~~w~kRk 172 (226)
..|.+=+
T Consensus 92 ~dL~~lk 98 (102)
T 2qyw_A 92 KDLAKLH 98 (102)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8776543
No 392
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=48.49 E-value=45 Score=25.41 Aligned_cols=25 Identities=24% Similarity=0.250 Sum_probs=19.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHH
Q 027236 117 TLEQIREKEAQLVKEVKEMENKLAK 141 (226)
Q Consensus 117 t~~el~~~i~~L~~e~~~l~~kL~~ 141 (226)
+.++-.+.|..|+.++.+...+|..
T Consensus 86 seeeQ~~ri~~Le~E~~~~~~el~~ 110 (151)
T 1yke_B 86 SAEEQLRKIDMLQKKLVEVEDEKIE 110 (151)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5577778889999888888887744
No 393
>3tul_A Cell invasion protein SIPB; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.79A {Salmonella enterica subsp}
Probab=48.39 E-value=88 Score=23.79 Aligned_cols=57 Identities=16% Similarity=0.222 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027236 86 EENAKLQEQLEEQRKAISKLEGEIRTLQSN-LTLEQIREKEAQLVKEVKEMENKLAKL 142 (226)
Q Consensus 86 ~~i~~l~~~l~~l~~~~k~l~~el~~l~~~-~t~~el~~~i~~L~~e~~~l~~kL~~l 142 (226)
..+...+..+..+...+..++.+|..|... |...++...+.++..+.......++.-
T Consensus 69 ~n~~sA~~~~d~lekKl~~aq~kL~~L~P~~P~Yak~~a~~~q~~~d~~~~~~~~~kA 126 (158)
T 3tul_A 69 KKTDTAKSVYDAATKKLTQAQNKLQSLDPADPGYAQAEAAVEQAGKEATEAKEALDKA 126 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTC-------CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455667777777888888888887764 777888888888888888887776553
No 394
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=48.38 E-value=81 Score=25.34 Aligned_cols=25 Identities=20% Similarity=0.128 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 027236 88 NAKLQEQLEEQRKAISKLEGEIRTL 112 (226)
Q Consensus 88 i~~l~~~l~~l~~~~k~l~~el~~l 112 (226)
..+++.++..|..++..++.+.+.+
T Consensus 134 ~~~~~~~~~~L~~e~~~l~~~~~~l 158 (213)
T 1ik9_A 134 IAENQAKNEHLQKENERLLRDWNDV 158 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444433
No 395
>2ra5_A Putative transcriptional regulator; beta structure, UTRA domain, structural genomics, PSI-2, protein structure initiative; HET: SRT; 2.40A {Streptomyces coelicolor A3} SCOP: d.190.1.2
Probab=48.31 E-value=4.2 Score=33.36 Aligned_cols=33 Identities=27% Similarity=0.475 Sum_probs=5.0
Q ss_pred cHHHHHHHHhcccccHHHHHHHHHHHHHcCCcceee
Q 027236 24 NSQNVADALQKYNLKKAGIQKALDSLADNGKISFKE 59 (226)
Q Consensus 24 s~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~K~ 59 (226)
|..++...+ ||++++|.++|+.|+++|+|....
T Consensus 42 se~~La~~~---~vSr~tvr~Al~~L~~~G~i~~~~ 74 (247)
T 2ra5_A 42 NEIELAARL---GLSRPTVRQAIQSLVDKGLLVRRR 74 (247)
T ss_dssp -----------------------------CEEEEEC
T ss_pred CHHHHHHHH---CcCHHHHHHHHHHHHHCCCEEEEc
Confidence 555555544 899999999999999999987653
No 396
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=48.21 E-value=68 Score=22.48 Aligned_cols=64 Identities=19% Similarity=0.345 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHH--cCCcceeecCceeEEEeecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027236 39 KAGIQKALDSLAD--NGKISFKEYGKQKIYIARQDQFDIPNSEELNQMKEENAKLQEQLEEQRKAISKLEGEIR 110 (226)
Q Consensus 39 K~~v~k~L~~Lv~--~g~i~~K~~GK~kiY~~~Q~~~~~~~~ee~~~l~~~i~~l~~~l~~l~~~~k~l~~el~ 110 (226)
+.....+++.|-. ++--+.+.+|.. |+. .+. ++....+...+..+...+..+...+..+..++.
T Consensus 36 ~~e~~~~~~eL~~l~~d~~vy~~iG~v--fv~----~~~--~ea~~~L~~~~e~ie~~i~~le~~~~~l~~~l~ 101 (117)
T 2zqm_A 36 LTEAKKALDEIESLPDDAVVYKTVGTL--IVK----TTK--DKAVAELKEKIETLEVRLNALERQEKKLNEKLK 101 (117)
T ss_dssp HHHHHHHHHHHHTSCTTCCEEEEETTE--EEE----ECH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCcHhHHHhhHH--Hhh----ccH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555532 444566777843 333 221 233444455555554444444444444444433
No 397
>2zih_A Vacuolar protein sorting-associated protein 74; beta hairpin, VPS, golgi localization, VPS74, tetramer, golgi apparatus, phosphoprotein; 2.80A {Saccharomyces cerevisiae} PDB: 2zii_A
Probab=47.87 E-value=69 Score=27.87 Aligned_cols=55 Identities=20% Similarity=0.252 Sum_probs=43.0
Q ss_pred CcchHHHHHHHHHHhcCCCCcHHHHHHHHhc-------cccc-HHHHHHHHHHHHHcCCcceee
Q 027236 4 KSDNTEAIVLNYVNEQNRPLNSQNVADALQK-------YNLK-KAGIQKALDSLADNGKISFKE 59 (226)
Q Consensus 4 kg~ea~~~Il~y~~~~nrPys~~di~~~l~~-------~~v~-K~~v~k~L~~Lv~~g~i~~K~ 59 (226)
-|+---+.+|+.|.. .+|-++++....++. .++. +.....+++.|++.|.|....
T Consensus 138 TGDplLDeAL~~L~~-~~p~sv~~WI~~lsGetwn~~k~~~qlr~lrerv~~~LvekGvLr~ek 200 (347)
T 2zih_A 138 TGEVLLDETLQLMKN-DEPLSISNWIDLLSGETWNLLKINYQLKQVRERLAKGLVDKGVLRTEM 200 (347)
T ss_dssp CSCHHHHHHHHHHHT-SCCCBHHHHHHHTTTCSCCGGGGGGSCCCHHHHHHHHHHHTTSBCCEE
T ss_pred CCCHHHHHHHHHHhh-cCCCCHHHHHHhccccccccchhhhhhhHHHHHHHHHHHHCCeEEeec
Confidence 356677788888875 578999998887652 1233 678899999999999999887
No 398
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=47.85 E-value=56 Score=21.42 Aligned_cols=22 Identities=9% Similarity=0.382 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 027236 122 REKEAQLVKEVKEMENKLAKLR 143 (226)
Q Consensus 122 ~~~i~~L~~e~~~l~~kL~~l~ 143 (226)
..+|.+|+..+..|+.+|+.++
T Consensus 55 k~Ei~elrr~iq~L~~el~slk 76 (77)
T 3trt_A 55 KQESTEYRRQVQSLTMEVDALK 76 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhc
Confidence 4567777777777777777665
No 399
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=47.75 E-value=38 Score=19.37 Aligned_cols=22 Identities=18% Similarity=0.374 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 027236 83 QMKEENAKLQEQLEEQRKAISK 104 (226)
Q Consensus 83 ~l~~~i~~l~~~l~~l~~~~k~ 104 (226)
++..+..+|-.+...|+.++..
T Consensus 5 QLE~KVEeLl~~~~~Le~eV~R 26 (36)
T 1kd8_B 5 QLKAKVEELKSKLWHLKNKVAR 26 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHH
Confidence 3333444443333333333333
No 400
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=47.45 E-value=49 Score=20.57 Aligned_cols=52 Identities=17% Similarity=0.197 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHH
Q 027236 80 ELNQMKEENAKLQEQLEEQRKAISKLEGEIRTLQSNLTLEQIREKEAQLVKEVKEMENKLA 140 (226)
Q Consensus 80 e~~~l~~~i~~l~~~l~~l~~~~k~l~~el~~l~~~~t~~el~~~i~~L~~e~~~l~~kL~ 140 (226)
....++..+.+..+.+...+..+..+...+..+ ...+......|..++..+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~---------~~~l~~~~~~I~~~k~qi~ 57 (60)
T 3htk_A 6 TKKTLENQVEELTEKCSLKTDEFLKAKEKINEI---------FEKLNTIRDEVIKKKNQNE 57 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444443333 3344444555555544443
No 401
>3oa7_A Head morphogenesis protein, chaotic nuclear migra protein 67 fusion protein; coiled coils, structural protein, spindle POLE BODY; 2.30A {Bacillus phage PHI29}
Probab=47.44 E-value=53 Score=26.24 Aligned_cols=38 Identities=13% Similarity=0.372 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCC-CCCCHHHHHH
Q 027236 119 EQIREKEAQLVKEVKEMENKLAKLRGGV-TLVKPEDRMA 156 (226)
Q Consensus 119 ~el~~~i~~L~~e~~~l~~kL~~l~~~~-~~vs~ee~~~ 156 (226)
.+|...++.+..++..|+++|..|+++. ..+|.+.+.+
T Consensus 47 ~dl~~s~~~l~ae~~~L~~~l~kLeGn~se~ITfe~~~k 85 (206)
T 3oa7_A 47 NDLTKSHNTLSKELDNLRSRFGNLEGNTSERITIKNILQ 85 (206)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCGGGCCCHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHccCCHHhccCHHHHhh
Confidence 3555667779999999999999999753 4566665544
No 402
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=47.16 E-value=24 Score=18.88 Aligned_cols=22 Identities=27% Similarity=0.345 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 027236 121 IREKEAQLVKEVKEMENKLAKL 142 (226)
Q Consensus 121 l~~~i~~L~~e~~~l~~kL~~l 142 (226)
|.+.+..|+.+++.+..+.+.+
T Consensus 4 lnallasleaenkqlkakveel 25 (31)
T 1p9i_A 4 LNALLASLEAENKQLKAKVEEL 25 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555554433
No 403
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=46.92 E-value=25 Score=29.22 Aligned_cols=36 Identities=25% Similarity=0.366 Sum_probs=18.7
Q ss_pred HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhccC
Q 027236 81 LNQMKEENAKL-------QEQLEEQRKAISKLEGEIRTLQSNL 116 (226)
Q Consensus 81 ~~~l~~~i~~l-------~~~l~~l~~~~k~l~~el~~l~~~~ 116 (226)
+..+..++..| .+.+..++.++..|+++++.|.+.|
T Consensus 56 l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~sPP 98 (251)
T 3m9b_A 56 IHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLGQPP 98 (251)
T ss_dssp HHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 44444444444 4455555555555555555555443
No 404
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.30A {Saccharomyces cerevisiae}
Probab=46.71 E-value=72 Score=22.32 Aligned_cols=51 Identities=12% Similarity=0.145 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCH---HHHHHHHHHHHHHHHHHHHHHHHhh
Q 027236 93 EQLEEQRKAISKLEGEIRTLQSNLTL---EQIREKEAQLVKEVKEMENKLAKLR 143 (226)
Q Consensus 93 ~~l~~l~~~~k~l~~el~~l~~~~t~---~el~~~i~~L~~e~~~l~~kL~~l~ 143 (226)
.+...++.++..+..++....+.-.- +.|..++..|..+++.+...|..-+
T Consensus 23 ~~~~~lk~E~~~lk~E~~stSaQDeFAKWaKL~Rk~DKl~~ele~l~~~l~~~k 76 (93)
T 3sjb_C 23 KKYLAKVKERHELKEFNNSISAQDNYAKWTKNNRKLDSLDKEINNLKDEIQSEN 76 (93)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555556666666655555443 5666667777777777766665544
No 405
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=46.36 E-value=81 Score=22.78 Aligned_cols=35 Identities=20% Similarity=0.304 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHH
Q 027236 102 ISKLEGEIRTLQSNLTLEQIREKEAQLVKEVKEMENK 138 (226)
Q Consensus 102 ~k~l~~el~~l~~~~t~~el~~~i~~L~~e~~~l~~k 138 (226)
+..|+.++..|+ -++..+...|-.|++.+..|+-.
T Consensus 37 ~~~Lq~El~~lr--~~~~~l~~~iReLEq~NDDLER~ 71 (111)
T 2v66_B 37 VSVLEDDLSQTR--AIKEQLHKYVRELEQANDDLERA 71 (111)
T ss_dssp HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHhchHHHHH
Confidence 334444444444 23466666777777777666654
No 406
>1s1c_X RHO-associated, coiled-coil containing protein kinase 1; GTPase, RHO kinase, ROCK, signaling protein; HET: GNP; 2.60A {Homo sapiens} SCOP: h.1.27.1
Probab=45.98 E-value=63 Score=21.45 Aligned_cols=30 Identities=20% Similarity=0.258 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027236 84 MKEENAKLQEQLEEQRKAISKLEGEIRTLQ 113 (226)
Q Consensus 84 l~~~i~~l~~~l~~l~~~~k~l~~el~~l~ 113 (226)
+...+..+..+..++...+++...++..++
T Consensus 4 L~k~i~~l~~E~eel~~klk~~~ee~~~~~ 33 (71)
T 1s1c_X 4 LTKDIEILRRENEELTEKMKKAEEEYKLEK 33 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777777777777777665
No 407
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=45.91 E-value=32 Score=22.18 Aligned_cols=11 Identities=27% Similarity=0.425 Sum_probs=4.5
Q ss_pred HHHHHHHHHHH
Q 027236 120 QIREKEAQLVK 130 (226)
Q Consensus 120 el~~~i~~L~~ 130 (226)
+|..++..|+.
T Consensus 48 ~L~~ev~~Lr~ 58 (63)
T 2dgc_A 48 HLENEVARLKK 58 (63)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33444444433
No 408
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=45.33 E-value=75 Score=22.13 Aligned_cols=16 Identities=19% Similarity=0.277 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 027236 79 EELNQMKEENAKLQEQ 94 (226)
Q Consensus 79 ee~~~l~~~i~~l~~~ 94 (226)
++...+..++..+..+
T Consensus 4 ~~~~~l~~eL~~l~~e 19 (96)
T 3q8t_A 4 SDSEQLQRELKELALE 19 (96)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHH
Confidence 3344444444443333
No 409
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=45.13 E-value=96 Score=23.30 Aligned_cols=24 Identities=25% Similarity=0.488 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 027236 120 QIREKEAQLVKEVKEMENKLAKLR 143 (226)
Q Consensus 120 el~~~i~~L~~e~~~l~~kL~~l~ 143 (226)
+|...+..|+..+..|+.++..++
T Consensus 54 eL~~~~~~Le~~n~~L~~~lke~~ 77 (155)
T 2oto_A 54 ELEKAKQALEDQRKDLETKLKELQ 77 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444544444444443
No 410
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=44.97 E-value=29 Score=19.48 Aligned_cols=41 Identities=10% Similarity=0.036 Sum_probs=28.4
Q ss_pred chHHHHHHHHHHhcCCCCcHHHHHHHHhcccccHHHHHHHHHHHHHc
Q 027236 6 DNTEAIVLNYVNEQNRPLNSQNVADALQKYNLKKAGIQKALDSLADN 52 (226)
Q Consensus 6 ~ea~~~Il~y~~~~nrPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~ 52 (226)
.+....|+.++ .+ -+|..+|...+ ||+.++|.+.+......
T Consensus 8 ~~~~~~i~~~~-~~--g~s~~~IA~~l---gis~~Tv~~~~~~~~~~ 48 (51)
T 1tc3_C 8 DTERAQLDVMK-LL--NVSLHEMSRKI---SRSRHCIRVYLKDPVSY 48 (51)
T ss_dssp HHHHHHHHHHH-HT--TCCHHHHHHHH---TCCHHHHHHHHHCSTTT
T ss_pred HHHHHHHHHHH-Hc--CCCHHHHHHHH---CcCHHHHHHHHhhHHhc
Confidence 44455566554 33 36888998888 89999999988755433
No 411
>3o2p_E Cell division control protein 53; ligase, cell cycle; 2.23A {Saccharomyces cerevisiae} PDB: 3o6b_B
Probab=44.93 E-value=44 Score=23.02 Aligned_cols=57 Identities=21% Similarity=0.372 Sum_probs=39.0
Q ss_pred HHHHHHHHHhcCCCCcHHHH----HHHHhc-ccccHHHHHHHHHHHHHcCCcceeecCceeEEEe
Q 027236 9 EAIVLNYVNEQNRPLNSQNV----ADALQK-YNLKKAGIQKALDSLADNGKISFKEYGKQKIYIA 68 (226)
Q Consensus 9 ~~~Il~y~~~~nrPys~~di----~~~l~~-~~v~K~~v~k~L~~Lv~~g~i~~K~~GK~kiY~~ 68 (226)
.+.|...|+.... .+.+++ ...|++ ...+.+.++++++.|++.+.|.-..-. ..|.+
T Consensus 25 qAaIVRIMK~rK~-l~h~~Lv~ev~~ql~~rF~p~~~~IKk~IE~LIekeYleR~~~~--~~y~Y 86 (88)
T 3o2p_E 25 EACIVRIMKAKRN-LPHTTLVNECIAQSHQRFNAKVSMVKRAIDSLIQKGYLQRGDDG--ESYAY 86 (88)
T ss_dssp HHHHHHHHHHHSE-EEHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTSEEECTTS--SEEEE
T ss_pred heeeehhhccccc-ccHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhhhHHhcCCCC--CeEEe
Confidence 5677788876544 344444 445554 357789999999999999998876433 55543
No 412
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=44.82 E-value=39 Score=29.85 Aligned_cols=36 Identities=19% Similarity=0.352 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027236 78 SEELNQMKEENAKLQEQLEEQRKAISKLEGEIRTLQ 113 (226)
Q Consensus 78 ~ee~~~l~~~i~~l~~~l~~l~~~~k~l~~el~~l~ 113 (226)
.+++..++.++.++.+++..++.++..+..++....
T Consensus 9 ~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 44 (403)
T 4etp_A 9 KEKIAALKEKIAALKEKIKDTELGMKELNEILIKEE 44 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355777778888888888888888877777765543
No 413
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=44.20 E-value=40 Score=20.46 Aligned_cols=20 Identities=15% Similarity=0.305 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 027236 94 QLEEQRKAISKLEGEIRTLQ 113 (226)
Q Consensus 94 ~l~~l~~~~k~l~~el~~l~ 113 (226)
.+..+...+..++..++.|-
T Consensus 6 kv~~Le~~ld~LqTr~ArLl 25 (46)
T 3swy_A 6 KVEQLGSSLDTLQTRFARLL 25 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444443
No 414
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=44.20 E-value=49 Score=19.65 Aligned_cols=26 Identities=19% Similarity=0.371 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027236 82 NQMKEENAKLQEQLEEQRKAISKLEG 107 (226)
Q Consensus 82 ~~l~~~i~~l~~~l~~l~~~~k~l~~ 107 (226)
...+.+|+...+++..++...++|++
T Consensus 12 ~kVdrEI~Kte~kI~~lqkKlkeLee 37 (42)
T 2l5g_B 12 DRVDREITMVEQQISKLKKKQQQLEE 37 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555543
No 415
>1ufm_A COP9 complex subunit 4; helix-turn-helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.4.5.47
Probab=44.10 E-value=17 Score=24.89 Aligned_cols=58 Identities=7% Similarity=0.029 Sum_probs=39.7
Q ss_pred HHHHHHHhcCCCCcHHHHHHHHhcccccHHHHHHHHHHHHHcCCcceeec-CceeEEEe
Q 027236 11 IVLNYVNEQNRPLNSQNVADALQKYNLKKAGIQKALDSLADNGKISFKEY-GKQKIYIA 68 (226)
Q Consensus 11 ~Il~y~~~~nrPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~K~~-GK~kiY~~ 68 (226)
.+.+-+..--+||+-..+.....-.+++...|.+.|-.|+.+|.|.++-= ....|.+-
T Consensus 16 v~E~nl~~is~~Y~~Isl~~La~ll~ls~~~vE~~ls~mI~~~~l~akIDq~~g~V~f~ 74 (84)
T 1ufm_A 16 VIEHNLLSASKLYNNITFEELGALLEIPAAKAEKIASQMITEGRMNGFIDQIDGIVHFE 74 (84)
T ss_dssp HHHHHHHHHHHSCSEEEHHHHHHHTTSCHHHHHHHHHHHHHTTSSCEEEETTTTEEEEC
T ss_pred HHHHHHHHHHHhcCeeeHHHHHHHHCcCHHHHHHHHHHHHhCCcEEEEEeCCCCEEEeC
Confidence 33344444445887665555443358999999999999999999998833 44455544
No 416
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=44.08 E-value=50 Score=22.60 Aligned_cols=41 Identities=10% Similarity=0.162 Sum_probs=33.1
Q ss_pred HHHHHHHHHHhcC--CCCcHHHHHHHHhcccccHHHHHHHHHHHHH
Q 027236 8 TEAIVLNYVNEQN--RPLNSQNVADALQKYNLKKAGIQKALDSLAD 51 (226)
Q Consensus 8 a~~~Il~y~~~~n--rPys~~di~~~l~~~~v~K~~v~k~L~~Lv~ 51 (226)
.-..|++|+.... .|+++.+|.+.+ |++...+.+.+.....
T Consensus 4 ~i~~~~~~i~~~~~~~~~~~~~lA~~~---~~S~~~l~r~fk~~~G 46 (107)
T 2k9s_A 4 RVREACQYISDHLADSNFDIASVAQHV---CLSPSRLSHLFRQQLG 46 (107)
T ss_dssp HHHHHHHHHHHTSSCSSCCHHHHHHHT---TSCHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhccCCCCHHHHHHHH---CCCHHHHHHHHHHHHC
Confidence 4467899998875 599999998877 7999999998876543
No 417
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=44.06 E-value=49 Score=22.66 Aligned_cols=40 Identities=20% Similarity=0.337 Sum_probs=32.0
Q ss_pred HHHHHHHHHHhc-CCCCcHHHHHHHHhcccccHHHHHHHHHHHH
Q 027236 8 TEAIVLNYVNEQ-NRPLNSQNVADALQKYNLKKAGIQKALDSLA 50 (226)
Q Consensus 8 a~~~Il~y~~~~-nrPys~~di~~~l~~~~v~K~~v~k~L~~Lv 50 (226)
.-..|++||... ..|+++.+|.+.+ |++...+...+....
T Consensus 3 ~i~~~~~~i~~~~~~~~~~~~lA~~~---~~s~~~l~r~fk~~~ 43 (108)
T 3mn2_A 3 AVRQVEEYIEANWMRPITIEKLTALT---GISSRGIFKAFQRSR 43 (108)
T ss_dssp HHHHHHHHHHHHTTSCCCHHHHHHHH---TCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcccCCCCHHHHHHHH---CCCHHHHHHHHHHHh
Confidence 346788888876 4789999998888 799999999887653
No 418
>2krc_A DNA-directed RNA polymerase subunit delta; delta subunit, GRAM-positive bacteria, nucleotidyltransferase, transcription, transferase; NMR {Bacillus subtilis}
Probab=43.73 E-value=16 Score=25.89 Aligned_cols=50 Identities=16% Similarity=0.307 Sum_probs=36.2
Q ss_pred HHHHHHHHhcCCCCcHHHHHHHHhc-ccccHHHHHHHHH----HHHHcCCcceee
Q 027236 10 AIVLNYVNEQNRPLNSQNVADALQK-YNLKKAGIQKALD----SLADNGKISFKE 59 (226)
Q Consensus 10 ~~Il~y~~~~nrPys~~di~~~l~~-~~v~K~~v~k~L~----~Lv~~g~i~~K~ 59 (226)
+...++|.+.+.|++..||.+...+ .+++...+.+.+- .|.-+|+.++--
T Consensus 17 DvAy~iL~~~~~~~~F~dL~~eV~~~~~~s~ee~~~~iaqfYTdLn~DGRFi~lG 71 (99)
T 2krc_A 17 EIAHELFEEHKKPVPFQELLNEIASLLGVKKEELGDRIAQFYTDLNIDGRFLALS 71 (99)
T ss_dssp HHHHHHHHHHCSCEEHHHHHHHHHHHHTSCGGGGTHHHHHHHHHHHTCSSCEESS
T ss_pred HHHHHHHHHcCCcccHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhccCCeeECC
Confidence 5678899999999999999988776 4677665544443 445577766543
No 419
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=43.58 E-value=39 Score=22.32 Aligned_cols=39 Identities=23% Similarity=0.308 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHH
Q 027236 95 LEEQRKAISKLEGEIRTLQSNLTLEQIREKEAQLVKEVKEM 135 (226)
Q Consensus 95 l~~l~~~~k~l~~el~~l~~~~t~~el~~~i~~L~~e~~~l 135 (226)
+.+|+..+..++.....+. -.+..|...|..|..++..+
T Consensus 31 i~~LE~~v~~le~~~~~l~--~en~~Lr~~i~~L~~El~~l 69 (70)
T 1gd2_E 31 LKALETQVVTLKELHSSTT--LENDQLRQKVRQLEEELRIL 69 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHH--HHHHHHTTHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHc
Confidence 3344444444433333322 23456666677777766543
No 420
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=43.18 E-value=43 Score=18.75 Aligned_cols=13 Identities=8% Similarity=0.079 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHHH
Q 027236 99 RKAISKLEGEIRT 111 (226)
Q Consensus 99 ~~~~k~l~~el~~ 111 (226)
=.+..+|+.+++.
T Consensus 13 l~~~~~Le~EV~R 25 (33)
T 3c3g_A 13 XSKXYHXENXLAR 25 (33)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHH
Confidence 3333333333333
No 421
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=43.13 E-value=53 Score=22.73 Aligned_cols=42 Identities=7% Similarity=0.262 Sum_probs=34.7
Q ss_pred chHHHHHHHHHHhc-CCCCcHHHHHHHHhcccccHHHHHHHHHHHH
Q 027236 6 DNTEAIVLNYVNEQ-NRPLNSQNVADALQKYNLKKAGIQKALDSLA 50 (226)
Q Consensus 6 ~ea~~~Il~y~~~~-nrPys~~di~~~l~~~~v~K~~v~k~L~~Lv 50 (226)
+..-..|++|+... ..|+++.+|...+ |++...+...+....
T Consensus 6 ~~~i~~~~~~i~~~~~~~~~~~~lA~~~---~~S~~~l~r~fk~~~ 48 (113)
T 3oio_A 6 QPKLTEAVSLMEANIEEPLSTDDIAYYV---GVSRRQLERLFKQYL 48 (113)
T ss_dssp CHHHHHHHHHHHTCSSSCCCHHHHHHHH---TSCHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHhhhcCCCCHHHHHHHH---CcCHHHHHHHHHHHH
Confidence 45667889999887 6799999998888 799999999887653
No 422
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=42.71 E-value=93 Score=22.45 Aligned_cols=36 Identities=17% Similarity=0.303 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027236 79 EELNQMKEENAKLQEQLEEQRKAISKLEGEIRTLQS 114 (226)
Q Consensus 79 ee~~~l~~~i~~l~~~l~~l~~~~k~l~~el~~l~~ 114 (226)
.++..+..++..+..+...+..++..+...+..++.
T Consensus 20 ~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~ 55 (119)
T 3ol1_A 20 EEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLRE 55 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777777777777777766666666666554
No 423
>3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A {Homo sapiens}
Probab=42.41 E-value=39 Score=31.08 Aligned_cols=65 Identities=12% Similarity=0.014 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-------------------HH---------------HHHHH
Q 027236 79 EELNQMKEENAKLQEQLEEQRKAISKLEGEIRTLQSNLT-------------------LE---------------QIREK 124 (226)
Q Consensus 79 ee~~~l~~~i~~l~~~l~~l~~~~k~l~~el~~l~~~~t-------------------~~---------------el~~~ 124 (226)
+++..++.+..+++.+++.++.+.+.+..++..+.+... .+ .+.++
T Consensus 34 d~~~~ld~~~r~~~~~~e~l~~~~N~~sk~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (522)
T 3vbb_A 34 DQLVKADSEWRRCRFRADNLNKLKNLCSKTIGEKMKKKEPVGDDESVPENVLSFDDLTADALANLKVSQIKKVRLLIDEA 113 (522)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC----CCCCCGGGCSSSSCCHHHHHTTCSSSHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccchhhHHHHHHHHhhhhhhhhhhhhHHHHhhhhhHHHH
Confidence 567778888888888999999888888888876643211 00 24466
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 027236 125 EAQLVKEVKEMENKLAKLR 143 (226)
Q Consensus 125 i~~L~~e~~~l~~kL~~l~ 143 (226)
|.+++.+..+++++|..+-
T Consensus 114 i~~~e~~~~~~~~~~~~~l 132 (522)
T 3vbb_A 114 ILKCDAERIKLEAERFENL 132 (522)
T ss_dssp CCCCHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 7778888888888886663
No 424
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=42.20 E-value=61 Score=20.17 Aligned_cols=29 Identities=17% Similarity=0.225 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027236 86 EENAKLQEQLEEQRKAISKLEGEIRTLQS 114 (226)
Q Consensus 86 ~~i~~l~~~l~~l~~~~k~l~~el~~l~~ 114 (226)
..+.+|..++..|..+...|..++..|..
T Consensus 22 ~~~~~LE~~v~~L~~eN~~L~~~~~~L~~ 50 (55)
T 1dh3_A 22 EYVKSLENRVAVLENQNKTLIEELKALKD 50 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666666666655554
No 425
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=42.17 E-value=7.4 Score=29.34 Aligned_cols=17 Identities=35% Similarity=0.558 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 027236 123 EKEAQLVKEVKEMENKL 139 (226)
Q Consensus 123 ~~i~~L~~e~~~l~~kL 139 (226)
.....++.++.+|...|
T Consensus 67 ~~~~~ie~ElE~LTasL 83 (135)
T 2e7s_A 67 EEADKLNKEVEDLTASL 83 (135)
T ss_dssp HTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444555555555444
No 426
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=41.96 E-value=77 Score=21.31 Aligned_cols=25 Identities=16% Similarity=0.279 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 027236 119 EQIREKEAQLVKEVKEMENKLAKLR 143 (226)
Q Consensus 119 ~el~~~i~~L~~e~~~l~~kL~~l~ 143 (226)
.+|.+++.+|.-+...+...|..++
T Consensus 33 ~DLI~rvdELt~E~e~l~~El~s~~ 57 (77)
T 2w83_C 33 NDLIAKVDELTCEKDVLQGELEAVK 57 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3455555555555555555554443
No 427
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=41.32 E-value=1.6e+02 Score=26.71 Aligned_cols=63 Identities=22% Similarity=0.307 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 027236 79 EELNQMKEENAKLQEQLEEQRKAISKLEG-----------EIRTLQSNLTLEQIREKEAQLVKEVKEMENKLAKLR 143 (226)
Q Consensus 79 ee~~~l~~~i~~l~~~l~~l~~~~k~l~~-----------el~~l~~~~t~~el~~~i~~L~~e~~~l~~kL~~l~ 143 (226)
++...+..++.+|+++-..+.+++..+.. +...+.. ...++.++|.+|+.+..+++++|..+-
T Consensus 77 ~~~r~~~~~~~~l~~~rn~~sk~i~~~~~~~~~~~~~~~~~~~~l~~--~~~~l~~~i~~l~~~~~~~~~~l~~~l 150 (501)
T 1wle_A 77 QELRQLREQIRSLEEEKEAVTEAVRALVVNQDNSQVQQDPQYQSLRA--RGREIRKQLTLLYPKEAQLEEQFYLRA 150 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTGGGCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccccccccHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55667777778888777777777766542 2223332 246788899999999999999987664
No 428
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=40.99 E-value=95 Score=22.09 Aligned_cols=31 Identities=16% Similarity=0.334 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027236 83 QMKEENAKLQEQLEEQRKAISKLEGEIRTLQ 113 (226)
Q Consensus 83 ~l~~~i~~l~~~l~~l~~~~k~l~~el~~l~ 113 (226)
++|++-+.|.=++..|+..+-.++..++.+.
T Consensus 20 QLDNEKsal~YqVdlLKD~LEe~eE~~aql~ 50 (103)
T 4h22_A 20 QLDNEKTNFMYQVDTLKDMLLELEEQLAESR 50 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445444444455555555555555544444
No 429
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=40.94 E-value=88 Score=21.67 Aligned_cols=62 Identities=13% Similarity=0.179 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCHHHHHHHHHHHHHHHHH-HHHHHHHhhC
Q 027236 83 QMKEENAKLQEQLEEQRKAISKLEGEIRTLQSN-LTLEQIREKEAQLVKEVKE-MENKLAKLRG 144 (226)
Q Consensus 83 ~l~~~i~~l~~~l~~l~~~~k~l~~el~~l~~~-~t~~el~~~i~~L~~e~~~-l~~kL~~l~~ 144 (226)
.....+.+....+.+...-+..+.-|+.++-.. .....+...+.+.+.++.. ++..|..+.+
T Consensus 31 ~Rk~~i~~ie~~ldEA~ell~qMelE~~~~~~p~~~R~~~~~klr~Yk~dl~~~lk~~lk~l~d 94 (97)
T 3onj_A 31 QRNTTLKHVEQQQDELFDLLDQMDVEVNNSIGDASERATYKAKLREWKKTIQSDIKRPLQSLVD 94 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 345667777788888888888888888877411 2237788888888888888 8888877653
No 430
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=40.58 E-value=50 Score=24.93 Aligned_cols=24 Identities=13% Similarity=0.392 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 027236 120 QIREKEAQLVKEVKEMENKLAKLR 143 (226)
Q Consensus 120 el~~~i~~L~~e~~~l~~kL~~l~ 143 (226)
++...+..|..++.+++.+++.++
T Consensus 29 ~l~~~v~~l~~e~k~l~ke~~~l~ 52 (171)
T 2zvf_A 29 KLPKTVERFFEEWKDQRKEIERLK 52 (171)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555554444
No 431
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=40.53 E-value=48 Score=19.80 Aligned_cols=21 Identities=29% Similarity=0.491 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 027236 122 REKEAQLVKEVKEMENKLAKL 142 (226)
Q Consensus 122 ~~~i~~L~~e~~~l~~kL~~l 142 (226)
...-+.|++.+..|+.||..|
T Consensus 15 ~~r~e~LE~Ri~~LE~KLd~L 35 (43)
T 2pnv_A 15 NERSEDFEKRIVTLETKLETL 35 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444
No 432
>2xzm_8 RPS25E,; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_8
Probab=40.44 E-value=47 Score=25.10 Aligned_cols=49 Identities=16% Similarity=0.232 Sum_probs=38.0
Q ss_pred CCCcHHHHHHHHhcccccHHHHHHHHHHHHHcCCcceee-cCceeEEEeecCC
Q 027236 21 RPLNSQNVADALQKYNLKKAGIQKALDSLADNGKISFKE-YGKQKIYIARQDQ 72 (226)
Q Consensus 21 rPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~K~-~GK~kiY~~~Q~~ 72 (226)
+-.+...|.+-| +|+-+...++|..|..+|+|..=. -..|.||-..-..
T Consensus 62 KlITpsvlseRl---kI~gSLARkaLreL~~kGlIk~V~kh~~q~IYTra~~~ 111 (143)
T 2xzm_8 62 KVLTVSTVVEKL---KVNGSLARQLMRTMADRKLVEKVAKNGNQWVYSVIGGV 111 (143)
T ss_dssp SEECHHHHHHHH---CBCHHHHHHHHHHHHHTTSEEEEEEETTEEEEEETTCC
T ss_pred eeecHHHHHHHh---cchHHHHHHHHHHHHHCCCEEEEecCCCeEEEecCCcc
Confidence 445655677766 789999999999999999997553 3588999886543
No 433
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=40.14 E-value=97 Score=21.95 Aligned_cols=64 Identities=9% Similarity=0.231 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-HH----HHHHHHHHHHHHHHHHHHHHHHhh
Q 027236 80 ELNQMKEENAKLQEQLEEQRKAISKLEGEIRTLQSNLT-LE----QIREKEAQLVKEVKEMENKLAKLR 143 (226)
Q Consensus 80 e~~~l~~~i~~l~~~l~~l~~~~k~l~~el~~l~~~~t-~~----el~~~i~~L~~e~~~l~~kL~~l~ 143 (226)
.+...-.++.+++..+..++..+..+...-....+.|. .. +|...+.+.......++.+|+.+.
T Consensus 6 ~m~~F~~~v~~I~~~i~~i~~~v~~l~~~~~~~L~~~~~~~~~~~~l~~l~~~i~~~a~~ik~~Lk~l~ 74 (127)
T 1ez3_A 6 FMDEFFEQVEEIRGFIDKIAENVEEVKRKHSAILASPNPDEKTKEELEELMSDIKKTANKVRSKLKSIE 74 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566777777777666666666554444333332 22 333333333344445555555553
No 434
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=39.94 E-value=85 Score=21.23 Aligned_cols=14 Identities=7% Similarity=0.005 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHH
Q 027236 120 QIREKEAQLVKEVK 133 (226)
Q Consensus 120 el~~~i~~L~~e~~ 133 (226)
|+..-++.|-.+|.
T Consensus 49 Elk~l~e~Ld~KI~ 62 (79)
T 3cvf_A 49 EVGRAAQLLDVSLF 62 (79)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHH
Confidence 33444444444443
No 435
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=39.88 E-value=45 Score=18.81 Aligned_cols=21 Identities=29% Similarity=0.594 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 027236 121 IREKEAQLVKEVKEMENKLAK 141 (226)
Q Consensus 121 l~~~i~~L~~e~~~l~~kL~~ 141 (226)
|.+++++|=.++.+|+..+..
T Consensus 6 LEdKVEeLl~~n~~Le~EV~R 26 (34)
T 1uo4_A 6 IEDKGEEILSKLYHIENELAR 26 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHH
Confidence 334444444444444444333
No 436
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=39.61 E-value=83 Score=21.03 Aligned_cols=47 Identities=15% Similarity=0.284 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027236 91 LQEQLEEQRKAISKLEGEIRTLQSNLTLEQIREKEAQLVKEVKEMENKLAKL 142 (226)
Q Consensus 91 l~~~l~~l~~~~k~l~~el~~l~~~~t~~el~~~i~~L~~e~~~l~~kL~~l 142 (226)
+.+.+..+...+..|+..++.|.+..+. .-..|++.+..|+.++..+
T Consensus 5 lEEKv~~LE~sld~LQTrfARLLaEy~s-----sQ~KLKqRit~LE~~~~~~ 51 (74)
T 3swf_A 5 LEEKVTRMESSVDLLQTRFARILAEYES-----MQQKLKQRLTKVEKFLKPL 51 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHhccc
Confidence 3344444455555555555555443222 2233444444444444443
No 437
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=39.60 E-value=38 Score=19.13 Aligned_cols=23 Identities=17% Similarity=0.313 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 027236 91 LQEQLEEQRKAISKLEGEIRTLQ 113 (226)
Q Consensus 91 l~~~l~~l~~~~k~l~~el~~l~ 113 (226)
|...+++|=.+..+|+.+++.|+
T Consensus 6 LEdKvEeLl~~~~~L~~EV~RLk 28 (34)
T 2bni_A 6 IEDKLEEILSKGHHICNELARIK 28 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccHHHHHHHHHHH
Confidence 33334444444444444444443
No 438
>3er9_B Poly(A) polymerase catalytic subunit; polyadenylate polymerase, translocation, single tranded RNA polymerase, RNA protein complex, processivity, heterodimer; HET: 3AT; 2.06A {Vaccinia virus WR} SCOP: e.69.1.1 PDB: 3er8_C* 3erc_C* 3owg_A 2ga9_D* 2gaf_D
Probab=39.30 E-value=9.4 Score=33.99 Aligned_cols=48 Identities=13% Similarity=0.182 Sum_probs=38.9
Q ss_pred chHHHHHHHHHHhcCCCCcHHHHHHHHhcccccHHHHHHHHHHHHHcC
Q 027236 6 DNTEAIVLNYVNEQNRPLNSQNVADALQKYNLKKAGIQKALDSLADNG 53 (226)
Q Consensus 6 ~ea~~~Il~y~~~~nrPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g 53 (226)
.+-...|++||.+|++++++-.|...+.=+.|--+.+.++|-.|...+
T Consensus 72 ~eIk~rI~~YF~KQ~~~~kiG~i~tIielQ~vlVtt~t~~lgvLttk~ 119 (479)
T 3er9_B 72 SEIKDRILSYFSKQTQTYNIGKLFTIIELQSVLVTTYTDILGVLTIKA 119 (479)
T ss_dssp HHHHHHHHHHTTGGGGCCCHHHHHHHHHHHHHHHHHHHHHTGGGGC--
T ss_pred HHHHHHHHHHHhhccchhhhhhhhhhheehhhhhhhHhhhhhHhhcCC
Confidence 577889999999999999999988876444678888999998887743
No 439
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=39.11 E-value=71 Score=20.07 Aligned_cols=31 Identities=13% Similarity=0.285 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027236 83 QMKEENAKLQEQLEEQRKAISKLEGEIRTLQ 113 (226)
Q Consensus 83 ~l~~~i~~l~~~l~~l~~~~k~l~~el~~l~ 113 (226)
.+..+...|..+...|..++..|..++..|.
T Consensus 26 ~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk 56 (61)
T 1t2k_D 26 SLEKKAEDLSSLNGQLQSEVTLLRNEVAQLK 56 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555555555554444443
No 440
>2nrj_A HBL B protein; enterotoxin, hemolysis, transmembrane, structural genomics, PSI-2, protein structure initiative; 2.03A {Bacillus cereus} SCOP: h.4.4.2
Probab=38.41 E-value=89 Score=26.91 Aligned_cols=103 Identities=8% Similarity=0.166 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHhhC----CCCCCCH
Q 027236 79 EELNQMKEENAKLQEQLEEQRKA---ISKLEGEIRTLQSNLTLEQIREKEAQLVKEVKEMENKLAKLRG----GVTLVKP 151 (226)
Q Consensus 79 ee~~~l~~~i~~l~~~l~~l~~~---~k~l~~el~~l~~~~t~~el~~~i~~L~~e~~~l~~kL~~l~~----~~~~vs~ 151 (226)
.++..+..++.+++.++...... +..+...+..+.. +.......++.+......+...+..+.. ....+++
T Consensus 226 k~~~~~~~ei~~l~~~i~~~~~l~~~l~~~~~~~~~l~~--~I~~Ai~al~~l~~~W~~m~~~~~~l~~~I~~~~~~i~~ 303 (346)
T 2nrj_A 226 DNLGKLEPLLAELRQTVDYKVTLNRVVGVAYSNINEMHK--ALDDAINALTYMSTQWHDLDSQYSGVLGHIENAAQKADQ 303 (346)
T ss_dssp GGHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCST
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCH
Confidence 45666666666666554332222 2222223333222 1245555677778888888888766543 2234677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027236 152 EDRMAVEEMFLEKLSQWRKRKRMLRDIWDPIM 183 (226)
Q Consensus 152 ee~~~~~~~~~~~~~~w~kRkri~~~i~~~i~ 183 (226)
+.+..+...+..+...|.+=+.....+...+.
T Consensus 304 ~~~~~i~~~L~~a~~~W~~l~~~a~~l~~~~~ 335 (346)
T 2nrj_A 304 NKFKFLKPNLNAAKDSWKTLRTDAVTLKEGIK 335 (346)
T ss_dssp TTTGGGHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhh
Confidence 77887888889999999987666565555444
No 441
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=38.07 E-value=42 Score=33.83 Aligned_cols=17 Identities=12% Similarity=0.106 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 027236 86 EENAKLQEQLEEQRKAI 102 (226)
Q Consensus 86 ~~i~~l~~~l~~l~~~~ 102 (226)
..+.++..++..++.+.
T Consensus 878 ~~l~ele~~l~~Le~e~ 894 (1184)
T 1i84_S 878 AELKELEQKHTQLCEEK 894 (1184)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 442
>3m0d_C TNF receptor-associated factor 1; trimeric helix coiled coiled, acetylation, alternative splic apoptosis, coiled coil, cytoplasm; 2.80A {Homo sapiens}
Probab=37.83 E-value=79 Score=20.27 Aligned_cols=54 Identities=17% Similarity=0.204 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHH
Q 027236 81 LNQMKEENAKLQEQLEEQRKAISKLEGEIRTLQSNLTLEQIREKEAQLVKEVKEME 136 (226)
Q Consensus 81 ~~~l~~~i~~l~~~l~~l~~~~k~l~~el~~l~~~~t~~el~~~i~~L~~e~~~l~ 136 (226)
+..++..+..++.-+..+..++..+..++..+......+ ...|..|+.++..++
T Consensus 8 ~~~le~kl~~lEnIv~~l~~eve~~~~~lea~~rq~~~d--~~~Ie~Le~kv~~l~ 61 (65)
T 3m0d_C 8 LAELEGKLRVFENIVAVLNKEVEASHLALATSIHQSQLD--RERILSLEQRVVELQ 61 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhH--HHHHHHHHHHHHHHH
Confidence 344555555566555556566666666555553221111 344555555554444
No 443
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=37.69 E-value=75 Score=21.44 Aligned_cols=41 Identities=10% Similarity=0.191 Sum_probs=33.3
Q ss_pred HHHHHHHHHHhcC--CCCcHHHHHHHHhcccccHHHHHHHHHHHHH
Q 027236 8 TEAIVLNYVNEQN--RPLNSQNVADALQKYNLKKAGIQKALDSLAD 51 (226)
Q Consensus 8 a~~~Il~y~~~~n--rPys~~di~~~l~~~~v~K~~v~k~L~~Lv~ 51 (226)
.-+.|.+|+.+.. .|+++.+|.+.+ |++...+...+.....
T Consensus 3 ~~~~i~~~i~~~~~~~~~~~~~lA~~~---~~S~~~l~r~fk~~~g 45 (103)
T 3lsg_A 3 AKELIQNIIEESYTDSQFTLSVLSEKL---DLSSGYLSIMFKKNFG 45 (103)
T ss_dssp HHHHHHHHHHHHTTCTTCCHHHHHHHT---TCCHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHccCCCCCHHHHHHHH---CcCHHHHHHHHHHHHC
Confidence 4578889998874 389999998877 7999999998887643
No 444
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=37.64 E-value=95 Score=21.10 Aligned_cols=21 Identities=10% Similarity=0.240 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 027236 123 EKEAQLVKEVKEMENKLAKLR 143 (226)
Q Consensus 123 ~~i~~L~~e~~~l~~kL~~l~ 143 (226)
.++...+..+.+|...+..++
T Consensus 45 skL~eae~rn~eL~~e~~~l~ 65 (81)
T 1wt6_A 45 SQLREAEARNRDLEAHVRQLQ 65 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555544
No 445
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=37.33 E-value=71 Score=21.82 Aligned_cols=42 Identities=10% Similarity=0.232 Sum_probs=33.3
Q ss_pred hHHHHHHHHHHhc-CCCCcHHHHHHHHhcccccHHHHHHHHHHHHH
Q 027236 7 NTEAIVLNYVNEQ-NRPLNSQNVADALQKYNLKKAGIQKALDSLAD 51 (226)
Q Consensus 7 ea~~~Il~y~~~~-nrPys~~di~~~l~~~~v~K~~v~k~L~~Lv~ 51 (226)
..-..|++|+... ..|+++.+|.+.+ |++...+...+.....
T Consensus 5 ~~i~~~~~~i~~~~~~~~~~~~lA~~~---~~S~~~l~r~fk~~~G 47 (108)
T 3oou_A 5 PIIQNVLSYITEHFSEGMSLKTLGNDF---HINAVYLGQLFQKEMG 47 (108)
T ss_dssp CHHHHHHHHHHHHTTSCCCHHHHHHHH---TSCHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHH---CcCHHHHHHHHHHHHC
Confidence 4456788888876 4689999998888 7999999999887643
No 446
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=37.12 E-value=1.1e+02 Score=21.58 Aligned_cols=57 Identities=14% Similarity=0.337 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 027236 86 EENAKLQEQLEEQRKAISKLEGEIRTLQSNLTLEQIREKEAQLVKEVKEMENKLAKLRG 144 (226)
Q Consensus 86 ~~i~~l~~~l~~l~~~~k~l~~el~~l~~~~t~~el~~~i~~L~~e~~~l~~kL~~l~~ 144 (226)
..+..+++++..+..+.+....++..|...++. -...-...+.+...++..|+.|..
T Consensus 5 ~~~e~lre~l~~le~~~~~~~~e~~~L~~~l~e--E~~~R~~aE~~~~~ie~ElEeLTa 61 (97)
T 2eqb_B 5 SNYNQLKEDYNTLKRELSDRDDEVKRLREDIAK--ENELRTKAEEEADKLNKEVEDLTA 61 (97)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356778888888888888888888887655433 233445567777888888888864
No 447
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=37.03 E-value=74 Score=19.65 Aligned_cols=28 Identities=7% Similarity=0.172 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027236 81 LNQMKEENAKLQEQLEEQRKAISKLEGE 108 (226)
Q Consensus 81 ~~~l~~~i~~l~~~l~~l~~~~k~l~~e 108 (226)
+..+..++..|.++...|...++....+
T Consensus 11 ~~~l~~~l~~L~~rN~rL~~~L~~AR~e 38 (51)
T 3m91_A 11 IHQLEARIDSLAARNSKLMETLKEARQQ 38 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444443333333333
No 448
>3to7_A Histone acetyltransferase ESA1; MYST family; HET: ALY COA; 1.90A {Saccharomyces cerevisiae} SCOP: d.108.1.1 PDB: 3to6_A* 1fy7_A* 1mja_A* 1mjb_A* 3to9_A* 1mj9_A*
Probab=36.89 E-value=37 Score=28.56 Aligned_cols=52 Identities=12% Similarity=0.264 Sum_probs=36.2
Q ss_pred HHHHHHHHHhcCCCCcHHHHHHHHhcccccHHHHHHHHHHHHHcCCcceeecCceeEEEe
Q 027236 9 EAIVLNYVNEQNRPLNSQNVADALQKYNLKKAGIQKALDSLADNGKISFKEYGKQKIYIA 68 (226)
Q Consensus 9 ~~~Il~y~~~~nrPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~K~~GK~kiY~~ 68 (226)
...|+++|.+.+...|+.||...- ||+..-|..+|++| |.|. -+..|.+-++
T Consensus 195 ~~~i~~~L~~~~~~isi~~is~~T---gi~~~Dii~tL~~l---~~l~--~~kg~~~i~~ 246 (276)
T 3to7_A 195 SDTLITLLVEHQKEITIDEISSMT---SMTTTDILHTAKTL---NILR--YYKGQHIIFL 246 (276)
T ss_dssp HHHHHHHHHHTCSEEEHHHHHHHH---CBCHHHHHHHHHHT---TCEE--EETTEEEEEC
T ss_pred HHHHHHHHHhcCCceeHHHHHHHh---CCCHHHHHHHHHHC---CCEE--EeCCcEEEEE
Confidence 468999999999999988887654 78877766666655 5553 3444544443
No 449
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=36.83 E-value=1.2e+02 Score=21.89 Aligned_cols=68 Identities=12% Similarity=0.175 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH------HhccCCHHHHHHHHHHHHHHH-----HHHHHHHHHhhCCCCCCCHHHHHHHH
Q 027236 90 KLQEQLEEQRKAISKLEGEIRT------LQSNLTLEQIREKEAQLVKEV-----KEMENKLAKLRGGVTLVKPEDRMAVE 158 (226)
Q Consensus 90 ~l~~~l~~l~~~~k~l~~el~~------l~~~~t~~el~~~i~~L~~e~-----~~l~~kL~~l~~~~~~vs~ee~~~~~ 158 (226)
+|.+++..|+-+.+.|...+.. --..+|..+-...|.+.-... +.++.++...- ...++.+++..+-
T Consensus 12 eLaaeL~kLqmENK~LKkkl~~~g~~~p~d~~LTp~qKea~I~s~~~~Lss~A~~KIe~kVr~~t--a~~vTk~e~e~~L 89 (110)
T 2oa5_A 12 EMVKEVERLKLENKTLKQKVKSSGAVSSDDSILTAAKRESIIVSSSRALGAVAMRKIEAKVRSRA--AKAVTEQELTSLL 89 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHTC---------CCBCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--TTCCBHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hccccHHHHHHHH
Confidence 3445555556666666665543 122366677777776654443 33444544443 3346777766554
Q ss_pred H
Q 027236 159 E 159 (226)
Q Consensus 159 ~ 159 (226)
+
T Consensus 90 ~ 90 (110)
T 2oa5_A 90 Q 90 (110)
T ss_dssp H
T ss_pred h
Confidence 3
No 450
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=36.44 E-value=54 Score=18.56 Aligned_cols=38 Identities=5% Similarity=0.104 Sum_probs=26.8
Q ss_pred chHHHHHHHHHHhcCCCCcHHHHHHHHhcccccHHHHHHHHHHH
Q 027236 6 DNTEAIVLNYVNEQNRPLNSQNVADALQKYNLKKAGIQKALDSL 49 (226)
Q Consensus 6 ~ea~~~Il~y~~~~nrPys~~di~~~l~~~~v~K~~v~k~L~~L 49 (226)
.+....|+.++. .. +|..+|...+ ||+.++|-..|..+
T Consensus 8 ~~~~~~i~~l~~-~g--~s~~~ia~~l---gvs~~Tv~r~l~~~ 45 (52)
T 1jko_C 8 KHEQEQISRLLE-KG--HPRQQLAIIF---GIGVSTLYRYFPAS 45 (52)
T ss_dssp TTHHHHHHHHHH-TT--CCHHHHHHTT---SCCHHHHHHHSCTT
T ss_pred HHHHHHHHHHHH-cC--CCHHHHHHHH---CCCHHHHHHHHHHc
Confidence 344566777644 33 8888887766 89999998887543
No 451
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=36.29 E-value=37 Score=22.73 Aligned_cols=28 Identities=25% Similarity=0.322 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027236 79 EELNQMKEENAKLQEQLEEQRKAISKLE 106 (226)
Q Consensus 79 ee~~~l~~~i~~l~~~l~~l~~~~k~l~ 106 (226)
+|...+..+|.+|.+++..|+.+..-|+
T Consensus 15 EEVevLKe~I~EL~e~~~qLE~EN~~Lk 42 (78)
T 1dip_A 15 EEVEILKEQIRELVEKNSQLERENTLLK 42 (78)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666666666666666654443
No 452
>2xzm_7 Plectin/S10 domain containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_7
Probab=36.11 E-value=65 Score=24.80 Aligned_cols=58 Identities=10% Similarity=0.058 Sum_probs=40.6
Q ss_pred HHHHHHHHHHhcCCCCcHHHHHHHHhc--ccccHHHHHHHHHHHHHcCCcceeecCceeEEEe
Q 027236 8 TEAIVLNYVNEQNRPLNSQNVADALQK--YNLKKAGIQKALDSLADNGKISFKEYGKQKIYIA 68 (226)
Q Consensus 8 a~~~Il~y~~~~nrPys~~di~~~l~~--~~v~K~~v~k~L~~Lv~~g~i~~K~~GK~kiY~~ 68 (226)
-+..|++||-+..=-..-+|.. .|. .+|+-=.|.++|+||...|.|. +.|-=+.+||+
T Consensus 8 nR~~IYe~LFkeGV~VaKKD~~--kHpel~~vpNL~ViKamqSLkSRGyVk-EqFaWrhyYw~ 67 (162)
T 2xzm_7 8 TKIRIYKQLLQDGVFVLKKDFE--GHHEETGVPNLHCYILVRSLKDRGFLE-EIFNWGFTYYY 67 (162)
T ss_dssp HHHHHHHHHHHHTEEEEESCSS--SBCTTTCCBHHHHHHHHHHHHHHTSEE-EEEETTEEEEE
T ss_pred HHHHHHHHHhhcCcEEEecccc--CCCcccCcCcHHHHHHHhccccccccc-ceeeeEEEEEE
Confidence 4678888888754322222222 222 1477889999999999999954 56778889999
No 453
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=36.02 E-value=1.1e+02 Score=21.38 Aligned_cols=52 Identities=15% Similarity=0.270 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCH--HHHHHHHHHHHHHHHHHHHHH
Q 027236 85 KEENAKLQEQLEEQRKAISKLEGEIRTLQSNLTL--EQIREKEAQLVKEVKEMENKL 139 (226)
Q Consensus 85 ~~~i~~l~~~l~~l~~~~k~l~~el~~l~~~~t~--~el~~~i~~L~~e~~~l~~kL 139 (226)
...+.+....+.+...-+.++.-|+..+ |++ ..+..++.+.+.++..++.+|
T Consensus 48 k~~i~~ie~~ldEA~eLl~qMelE~r~~---p~s~R~~~~~klr~Yk~dL~~lk~el 101 (102)
T 2qyw_A 48 KKLVRDFDEKQQEANETLAEMEEELRYA---PLTFRNPMMSKLRNYRKDLAKLHREV 101 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTS---CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3556667777777777777777777666 333 566666666666666655543
No 454
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=35.77 E-value=2.5e+02 Score=31.12 Aligned_cols=79 Identities=16% Similarity=0.097 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----c-cCCHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCHHHHHHH
Q 027236 83 QMKEENAKLQEQLEEQRKAISKLEGEIRTLQ----S-NLTLEQIREKEAQLVKEVKEMENKLAKLRGGVTLVKPEDRMAV 157 (226)
Q Consensus 83 ~l~~~i~~l~~~l~~l~~~~k~l~~el~~l~----~-~~t~~el~~~i~~L~~e~~~l~~kL~~l~~~~~~vs~ee~~~~ 157 (226)
+++.+-.+|..+..+.+.++++++.+|=..- + -+.+++|...+++.+..-.++.++++..+. +..+++.+
T Consensus 2143 dLE~~r~~Li~~~~~~k~~Lk~lEd~lL~~Ls~s~GniLdd~~lI~~L~~sK~~a~eI~~kl~~a~~-----t~~~I~~~ 2217 (2695)
T 4akg_A 2143 EMQRKREDLIKLNTEYKLKLKNLEKRLLEELNNSQGNMLENDELMVTLNNLKKEAMNIEKKLSESEE-----FFPQFDNL 2217 (2695)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSSCSTHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCccCcHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHH
Confidence 4566667777778888888888887544432 2 378899999999999999999999876542 35566666
Q ss_pred HHHHHHHHH
Q 027236 158 EEMFLEKLS 166 (226)
Q Consensus 158 ~~~~~~~~~ 166 (226)
...|.-.+.
T Consensus 2218 R~~YrpvA~ 2226 (2695)
T 4akg_A 2218 VEEYSIIGK 2226 (2695)
T ss_dssp HHHHHHHHH
T ss_pred HHHhHHHHH
Confidence 666654443
No 455
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=35.73 E-value=41 Score=29.35 Aligned_cols=72 Identities=15% Similarity=0.192 Sum_probs=35.1
Q ss_pred cCCCCcHHHHHHHHhcccccHHHHHHHHHHHHHcCCcceeec---CceeEEEeecCCCCCCCHHHHHHHHHHHHHHHHHH
Q 027236 19 QNRPLNSQNVADALQKYNLKKAGIQKALDSLADNGKISFKEY---GKQKIYIARQDQFDIPNSEELNQMKEENAKLQEQL 95 (226)
Q Consensus 19 ~nrPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~K~~---GK~kiY~~~Q~~~~~~~~ee~~~l~~~i~~l~~~l 95 (226)
.+|.-+..+|...| +|+-..|...+-.++..|+|.++-= |.-.|=|+....++ +++...|...+..-...+
T Consensus 304 ~~~~i~f~~ia~~l---~i~~~evE~lli~aI~~glI~GkIDQv~~~v~v~~~~pR~~~---~~q~~~l~~~L~~W~~~v 377 (393)
T 4b4t_O 304 NIRMLSFEDISKAT---HLPKDNVEHLVMRAISLGLLKGSIDQVNELVTISWVQPRIIS---GDQITKMKDRLVEWNDQV 377 (393)
T ss_dssp SCCCEEHHHHHHHH---TCCHHHHHHHHHHHHHHSCSSSCEETTTTEECC------------------------------
T ss_pred CCCcCcHHHHHHHh---CcCHHHHHHHHHHHHHcCCEEEEEcCCCCEEEEEeccCCCCC---HHHHHHHHHHHHHHHHHH
Confidence 45666777888888 7899999999999999999999854 44344466433333 455544444444333333
Q ss_pred H
Q 027236 96 E 96 (226)
Q Consensus 96 ~ 96 (226)
.
T Consensus 378 ~ 378 (393)
T 4b4t_O 378 E 378 (393)
T ss_dssp -
T ss_pred H
Confidence 3
No 456
>2zfw_A PEX; five alpha-helices + one beta-sheet, circadian clock protein; 2.90A {Synechococcus SP}
Probab=35.66 E-value=68 Score=24.12 Aligned_cols=61 Identities=23% Similarity=0.276 Sum_probs=43.3
Q ss_pred HHHHHHHHhcCCCCcHHHHHHHHhc----ccccHHHHHHHHHHHHHcCCcceeec-----Cc-eeEEEeecCC
Q 027236 10 AIVLNYVNEQNRPLNSQNVADALQK----YNLKKAGIQKALDSLADNGKISFKEY-----GK-QKIYIARQDQ 72 (226)
Q Consensus 10 ~~Il~y~~~~nrPys~~di~~~l~~----~~v~K~~v~k~L~~Lv~~g~i~~K~~-----GK-~kiY~~~Q~~ 72 (226)
-.||..+.+ .|..--+|...+.. .+++-.++-.+|..|.++|+|..... |. .++|..-...
T Consensus 47 ~~IL~lL~~--~p~~GYeI~k~l~~~~~~~~is~gtLYp~L~rLE~~GlI~~~~~~~~~~g~~rk~Y~LT~~G 117 (148)
T 2zfw_A 47 CYVLAVLRH--EDSYGTELIQHLETHWPNYRLSDTVLYTALKFLEDEQIISGYWKKVEGRGRPRRMYQLAQAN 117 (148)
T ss_dssp HHHHHHHTT--CCEEHHHHHHHHHHHCTTEECCSHHHHHHHHHHHHTSSEEEECCCCTTSSCCCCEEEESSSS
T ss_pred HHHHHHHHh--CCCcHHHHHHHHHHHcCCCCCChhHHHHHHHHHHHCCCEEEEeeccCCCCCCcEEEEECHHH
Confidence 357888764 67666666665542 25889999999999999999998742 43 4677774443
No 457
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=35.65 E-value=79 Score=19.60 Aligned_cols=18 Identities=0% Similarity=0.115 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 027236 85 KEENAKLQEQLEEQRKAI 102 (226)
Q Consensus 85 ~~~i~~l~~~l~~l~~~~ 102 (226)
..++.+|..++..|..++
T Consensus 10 ss~V~~L~~kVdqLssdV 27 (52)
T 1jcd_A 10 SSDAQTANAKADQASNDA 27 (52)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 458
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=35.64 E-value=55 Score=22.81 Aligned_cols=35 Identities=9% Similarity=0.274 Sum_probs=23.6
Q ss_pred HHHHHHHHHHhcCCCCcHHHHHHHHhcccccHHHHHHH
Q 027236 8 TEAIVLNYVNEQNRPLNSQNVADALQKYNLKKAGIQKA 45 (226)
Q Consensus 8 a~~~Il~y~~~~nrPys~~di~~~l~~~~v~K~~v~k~ 45 (226)
.+-.++.|+...+.++|..+|...+ ||+..+|...
T Consensus 25 R~Vi~Lry~l~~~e~~s~~EIA~~l---giS~~tVr~~ 59 (99)
T 3t72_q 25 AKVLRMRFGIDMNTDYTLEEVGKQF---DVTRERIRQI 59 (99)
T ss_pred HHHHHHHHhcCCCCCCCHHHHHHHH---CcCHHHHHHH
Confidence 3344455555556899999999988 5666665544
No 459
>1jhf_A LEXA repressor; LEXA SOS repressor, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.2 b.87.1.1 PDB: 1jhh_A 3jso_A* 3jsp_A* 3k3r_E* 1jhc_A 1jhe_A 1lea_A 1leb_A
Probab=35.43 E-value=74 Score=24.47 Aligned_cols=47 Identities=17% Similarity=0.334 Sum_probs=35.7
Q ss_pred HHHHHHHHHhcCCCCcHHHHHHHHhccccc-HHHHHHHHHHHHHcCCccee
Q 027236 9 EAIVLNYVNEQNRPLNSQNVADALQKYNLK-KAGIQKALDSLADNGKISFK 58 (226)
Q Consensus 9 ~~~Il~y~~~~nrPys~~di~~~l~~~~v~-K~~v~k~L~~Lv~~g~i~~K 58 (226)
-+.|.+++.+.+-|-|..++.+.+ ||+ .++|...+..|...|.|...
T Consensus 12 ~~~i~~~~~~~g~~ps~~elA~~l---giss~~tv~~~~~~l~~~~~l~~~ 59 (202)
T 1jhf_A 12 FDLIRDHISQTGMPPTRAEIAQRL---GFRSPNAAEEHLKALARKGVIEIV 59 (202)
T ss_dssp HHHHHHHHHHHSSCCCHHHHHHHT---TCSSHHHHHHHHHHHHHTTSEEEC
T ss_pred HHHHHHHHHHhCCCccHHHHHHHh---CCCChHHHHHHHHHHHHCCCceeC
Confidence 345555566566655988888877 898 99999999999998876543
No 460
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=35.41 E-value=61 Score=23.09 Aligned_cols=36 Identities=17% Similarity=0.290 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 027236 80 ELNQMKEENAKLQEQLEEQRKAISKLEGEIRTLQSN 115 (226)
Q Consensus 80 e~~~l~~~i~~l~~~l~~l~~~~k~l~~el~~l~~~ 115 (226)
.+..+..++..|.++-..|...+..++..|+.+...
T Consensus 7 ~~~~Lk~El~~L~~~E~~LD~~i~~~~~~l~~lted 42 (106)
T 2aze_B 7 RLEGLTQDLRQLQESEQQLDHLMNICTTQLRLLSED 42 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 345556666666666666666666666666665543
No 461
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=35.38 E-value=90 Score=21.27 Aligned_cols=29 Identities=17% Similarity=-0.012 Sum_probs=17.7
Q ss_pred chHHHHHHHHHHhcCCCCcHHHHHHHHhc
Q 027236 6 DNTEAIVLNYVNEQNRPLNSQNVADALQK 34 (226)
Q Consensus 6 ~ea~~~Il~y~~~~nrPys~~di~~~l~~ 34 (226)
++.....-.-+.+.+|--.+++-+..|..
T Consensus 2 ed~~~R~~Hn~~ER~RR~~ln~~f~~Lr~ 30 (88)
T 1nkp_A 2 HMNVKRRTHNVLERQRRNELKRSFFALRD 30 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CChhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 34445555566666666666666666654
No 462
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=34.98 E-value=45 Score=22.31 Aligned_cols=31 Identities=23% Similarity=0.461 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027236 82 NQMKEENAKLQEQLEEQRKAISKLEGEIRTL 112 (226)
Q Consensus 82 ~~l~~~i~~l~~~l~~l~~~~k~l~~el~~l 112 (226)
..+..++..+..++..|+.+...|..+|..|
T Consensus 50 ~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~L 80 (83)
T 1nkp_B 50 QYMRRKNHTHQQDIDDLKRQNALLEQQVRAL 80 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444444455555555555555544443
No 463
>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T
Probab=34.89 E-value=1.1e+02 Score=21.16 Aligned_cols=55 Identities=7% Similarity=0.145 Sum_probs=36.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCHHHHH----HHHHHHHHHHHHHHHH
Q 027236 116 LTLEQIREKEAQLVKEVKEMENKLAKLRGGVTLVKPEDRM----AVEEMFLEKLSQWRKR 171 (226)
Q Consensus 116 ~t~~el~~~i~~L~~e~~~l~~kL~~l~~~~~~vs~ee~~----~~~~~~~~~~~~w~kR 171 (226)
-...|+..-+..|+..+..|..-+.-.+++ .+......+ .+...+......|..|
T Consensus 36 ~~~~El~~~l~el~e~l~DL~~SI~i~e~~-~~~EI~~Rk~~v~~l~~~i~~lk~~~~~~ 94 (95)
T 2c5k_T 36 DQEEEIQDILKDVEETIVDLDRSIIVMKRD-ENEDVSGREAQVKNIKQQLDALKLRFDRR 94 (95)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHTS-TTCCCHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 334888999999999999999988887765 222222333 3444555666666544
No 464
>3v2d_2 50S ribosomal protein L29; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_W 1vsa_W 2j03_2 2jl6_2 2jl8_2 2v47_2 2v49_2 2wdi_2 2wdj_2 2wdl_2 2wdn_2 2wh2_2 2wh4_2 2wrj_2 2wrl_2 2wro_2 2wrr_2 2x9s_2 2x9u_2 2xg0_2 ...
Probab=34.71 E-value=98 Score=20.38 Aligned_cols=53 Identities=11% Similarity=0.165 Sum_probs=35.7
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 027236 115 NLTLEQIREKEAQLVKEVKEMENKLAKLRGGVTLVKPEDRMAVEEMFLEKLSQWRKR 171 (226)
Q Consensus 115 ~~t~~el~~~i~~L~~e~~~l~~kL~~l~~~~~~vs~ee~~~~~~~~~~~~~~w~kR 171 (226)
..|.+||.+++.+|+.+.-.|.-+... | ..-+|..+..+.+.+.......+.|
T Consensus 15 ~~s~eEL~~~L~elk~ELf~LR~q~at---g-ql~n~~~ir~vRr~IARi~Tvl~er 67 (72)
T 3v2d_2 15 KLSPVELEKLVREKKRELMELRFQASI---G-QLSQNHKIRDLKRQIARLLTVLNEK 67 (72)
T ss_dssp HSCHHHHHHHHHHHHHHHHHHHHHHHT---T-CCCCTTHHHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHHHh---c-CCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 367788888888888888777765422 2 2346778888887776555555544
No 465
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=34.71 E-value=1.3e+02 Score=21.74 Aligned_cols=25 Identities=16% Similarity=0.256 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 027236 81 LNQMKEENAKLQEQLEEQRKAISKL 105 (226)
Q Consensus 81 ~~~l~~~i~~l~~~l~~l~~~~k~l 105 (226)
+..++.++.....+|....+.++..
T Consensus 24 ieeLq~Ei~~~E~QL~~ArQKLkdA 48 (113)
T 4fi5_A 24 MEELQREINAHEGQLVIARQKVRDA 48 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555555555444444
No 466
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=34.43 E-value=77 Score=22.14 Aligned_cols=40 Identities=18% Similarity=0.214 Sum_probs=32.4
Q ss_pred chHHHHHHHHHHhc-CCCCcHHHHHHHHhcccccHHHHHHHHHH
Q 027236 6 DNTEAIVLNYVNEQ-NRPLNSQNVADALQKYNLKKAGIQKALDS 48 (226)
Q Consensus 6 ~ea~~~Il~y~~~~-nrPys~~di~~~l~~~~v~K~~v~k~L~~ 48 (226)
++.-..|++||... ..|+++.+|...+ |++...+...+..
T Consensus 6 ~~~~~~~~~~i~~~~~~~~~~~~lA~~~---~~S~~~l~r~fk~ 46 (120)
T 3mkl_A 6 PNMRTRVCTVINNNIAHEWTLARIASEL---LMSPSLLKKKLRE 46 (120)
T ss_dssp CCHHHHHHHHHHTSTTSCCCHHHHHHHT---TCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCCHHHHHHHH---CcCHHHHHHHHHH
Confidence 45567889999887 5699999998877 7999998888765
No 467
>2kdo_A Ribosome maturation protein SBDS; SBDS protein, protein structure, RNA-interacting protein mutation, phosphoprotein, ribosome biogenesis; NMR {Homo sapiens} PDB: 2l9n_A
Probab=34.40 E-value=77 Score=26.26 Aligned_cols=46 Identities=13% Similarity=0.208 Sum_probs=38.0
Q ss_pred chHHHHHHHHHHh------cCCCCcHHHHHHHHhcc-------cccHHHHHHHHHHHHH
Q 027236 6 DNTEAIVLNYVNE------QNRPLNSQNVADALQKY-------NLKKAGIQKALDSLAD 51 (226)
Q Consensus 6 ~ea~~~Il~y~~~------~nrPys~~di~~~l~~~-------~v~K~~v~k~L~~Lv~ 51 (226)
++....|..|+.. +||||...-|+.+|... +=.|.++.+++..|..
T Consensus 107 e~k~r~Ii~~Ia~~~VnP~T~~P~p~~~IE~Am~e~~~~vdp~ksak~Qalevik~L~~ 165 (252)
T 2kdo_A 107 EQMFRDIATIVADKCVNPETKRPYTVILIERAMKDIHYSVKTNKSTKQQALEVIKQLKE 165 (252)
T ss_dssp TTHHHHHHHHHHTTEECCTTSCTTCHHHHHHHHHHHSSCSSTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhCCcccCCCCCHHHHHHHHHHHhhh
Confidence 6788888888876 89999999999998762 2347899999999975
No 468
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=34.31 E-value=2.8e+02 Score=25.52 Aligned_cols=16 Identities=13% Similarity=0.003 Sum_probs=10.2
Q ss_pred CCCCHHHHHHHHHHHH
Q 027236 147 TLVKPEDRMAVEEMFL 162 (226)
Q Consensus 147 ~~vs~ee~~~~~~~~~ 162 (226)
..|+-+..+.+++++.
T Consensus 171 ~~vd~~sY~~~QKQLe 186 (562)
T 3ghg_A 171 REVDLKDYEDQQKQLE 186 (562)
T ss_dssp CCCCHHHHHHHHHHHH
T ss_pred eecchHHHHHHHHHHH
Confidence 3567777666666654
No 469
>1vq8_V 50S ribosomal protein L29P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: a.2.2.1 PDB: 1vq4_V* 1vq5_V* 1vq6_V* 1vq7_V* 1s72_V* 1vq9_V* 1vqk_V* 1vql_V* 1vqm_V* 1vqn_V* 1vqo_V* 1vqp_V* 1yhq_V* 1yi2_V* 1yij_V* 1yit_V* 1yj9_V* 1yjn_V* 1yjw_V* 2otj_V* ...
Probab=34.28 E-value=98 Score=20.28 Aligned_cols=54 Identities=9% Similarity=0.039 Sum_probs=35.7
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 027236 115 NLTLEQIREKEAQLVKEVKEMENKLAKLRGGVTLVKPEDRMAVEEMFLEKLSQWRKR 171 (226)
Q Consensus 115 ~~t~~el~~~i~~L~~e~~~l~~kL~~l~~~~~~vs~ee~~~~~~~~~~~~~~w~kR 171 (226)
..|.+||..++.+|+.+.-.|.-+. ..|+.+-+|..+..+.+.+.......+.|
T Consensus 11 ~~s~~EL~~~l~elk~ELf~LR~q~---atggql~n~~~ir~vRr~IARi~Tvl~er 64 (71)
T 1vq8_V 11 DMTPAEREAELDDLKTELLNARAVQ---AAGGAPENPGRIKELRKAIARIKTIQGEE 64 (71)
T ss_dssp HSCHHHHHHHHHHHHHHHHHHHHHH---HTTCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHH---HhcCCccChHHHHHHHHHHHHHHHHHHHH
Confidence 3577888888888888877766432 22344567888888888776555544444
No 470
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Probab=34.25 E-value=17 Score=27.16 Aligned_cols=20 Identities=10% Similarity=0.129 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHhhCCC
Q 027236 127 QLVKEVKEMENKLAKLRGGV 146 (226)
Q Consensus 127 ~L~~e~~~l~~kL~~l~~~~ 146 (226)
.+..+++.|+.+|..+..++
T Consensus 17 Rlk~sVKKLE~RLkKYepgS 36 (154)
T 1qzv_F 17 XEKQALKKLQASLKLYADDS 36 (154)
T ss_pred HHHHHHHHHHHHHHcCCCCC
Confidence 34455566666666665554
No 471
>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*
Probab=34.18 E-value=72 Score=26.70 Aligned_cols=46 Identities=9% Similarity=0.132 Sum_probs=38.5
Q ss_pred HHHHHHHhcCCCCcHHHHHHHHhcccccHHHHHHHHHHHHHcCCcceeecC
Q 027236 11 IVLNYVNEQNRPLNSQNVADALQKYNLKKAGIQKALDSLADNGKISFKEYG 61 (226)
Q Consensus 11 ~Il~y~~~~nrPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~K~~G 61 (226)
.|++.+. ..|.++.+|...+ ++....+...|..|+.-|+|....-|
T Consensus 43 ~i~~~l~--~~~~t~~ela~~~---~~~~~~l~r~L~~L~~~g~~~~~~~g 88 (360)
T 1tw3_A 43 RLVDHIL--AGARTVKALAART---DTRPEALLRLIRHLVAIGLLEEDAPG 88 (360)
T ss_dssp THHHHHH--TTCCBHHHHHHHH---TCCHHHHHHHHHHHHHTTSEEEEETT
T ss_pred CHHHHHh--CCCCCHHHHHHHh---CcCHHHHHHHHHHHHHCCCEEecCCC
Confidence 4667773 5799999998877 78899999999999999999886545
No 472
>2doa_A RNA polymerase II elongation factor ELL; C19ORF17, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.5.81
Probab=33.44 E-value=43 Score=23.98 Aligned_cols=72 Identities=19% Similarity=0.188 Sum_probs=46.3
Q ss_pred hHHHHHHHHHHhcCCCCcHHHHHHHHhccccc---HHHHHHHHHHHHHcCCcceeecCceeEEEe-------ecCCCCCC
Q 027236 7 NTEAIVLNYVNEQNRPLNSQNVADALQKYNLK---KAGIQKALDSLADNGKISFKEYGKQKIYIA-------RQDQFDIP 76 (226)
Q Consensus 7 ea~~~Il~y~~~~nrPys~~di~~~l~~~~v~---K~~v~k~L~~Lv~~g~i~~K~~GK~kiY~~-------~Q~~~~~~ 76 (226)
.-++.|.+.+- =+||+-.++..-|++-|++ +..+..+|++-+.=+ .+...|.. .|..+|-.
T Consensus 12 plReRvIHLLA--Lkpykk~EL~~RL~kdGl~~~d~~~l~~iL~eVA~~~-------~~~~~y~Lk~~~y~eVq~dWp~Y 82 (104)
T 2doa_A 12 PFRDRVLHLLA--LRPYRKAELLLRLQKDGLTQADKDALDGLLQQVANMS-------AKDGTCTLQDCMYKDVQKDWPGY 82 (104)
T ss_dssp CHHHHHHHHHH--HSCEEHHHHHHHHHHHCCCHHHHHHHHHHHHHSSEEC-------SSSCEEECCSSGGGGCCSCCTTC
T ss_pred cHHHHHHHHHH--cCCCCcHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-------CcCCeeeehHHHHHHhcCCCCCC
Confidence 34566777665 4699999999999987877 556666666543321 23344443 45567878
Q ss_pred CHHHHHHHHHH
Q 027236 77 NSEELNQMKEE 87 (226)
Q Consensus 77 ~~ee~~~l~~~ 87 (226)
|.+|...+...
T Consensus 83 te~erq~v~r~ 93 (104)
T 2doa_A 83 SEGDQQLLKRV 93 (104)
T ss_dssp CSHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 88887654443
No 473
>3tdu_C Cullin-1, CUL-1; E2:E3, ligase-protein binding complex; 1.50A {Homo sapiens} PDB: 3tdz_C
Probab=33.37 E-value=96 Score=20.66 Aligned_cols=57 Identities=16% Similarity=0.276 Sum_probs=38.0
Q ss_pred HHHHHHHHHhcCCCCcHHHH----HHHHhc-ccccHHHHHHHHHHHHHcCCcceeecCceeEEE
Q 027236 9 EAIVLNYVNEQNRPLNSQNV----ADALQK-YNLKKAGIQKALDSLADNGKISFKEYGKQKIYI 67 (226)
Q Consensus 9 ~~~Il~y~~~~nrPys~~di----~~~l~~-~~v~K~~v~k~L~~Lv~~g~i~~K~~GK~kiY~ 67 (226)
.+.|...|+.... .+.+++ ...|++ ...+-+.+++++++|++.+.|.-..- ...+|.
T Consensus 13 ~AaIVRIMK~rK~-l~h~~Lv~ev~~ql~~rF~p~~~~IKk~IE~LIereYl~R~~~-~~~~y~ 74 (77)
T 3tdu_C 13 QAAIVRIMKMRKV-LKHQQLLGEVLTQLSSRFKPRVPVIKKCIDILIEKEYLERVDG-EKDTYS 74 (77)
T ss_dssp HHHHHHHHHHHSE-EEHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTSEEEETT-EEEEEE
T ss_pred eeEEeeeecccce-eeHHHHHHHHHHHHhCcCCCCHHHHHHHHHHHHhhhHhhcCCC-CCceEE
Confidence 4667777776444 444444 445554 35778899999999999998877643 334454
No 474
>2zjr_V 50S ribosomal protein L29; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: a.2.2.1 PDB: 1nwx_W* 1nwy_W* 1sm1_W* 1xbp_W* 2aar_W 2d3o_W 2zjp_V* 2zjq_V 1nkw_W 3cf5_V* 3dll_V* 3pio_V* 3pip_V* 1pnu_W 1pny_W 1vor_Y 1vou_Y 1vow_Y 1voy_Y 1vp0_Y
Probab=33.34 E-value=98 Score=20.01 Aligned_cols=53 Identities=15% Similarity=0.087 Sum_probs=35.3
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 027236 115 NLTLEQIREKEAQLVKEVKEMENKLAKLRGGVTLVKPEDRMAVEEMFLEKLSQWRKR 171 (226)
Q Consensus 115 ~~t~~el~~~i~~L~~e~~~l~~kL~~l~~~~~~vs~ee~~~~~~~~~~~~~~w~kR 171 (226)
..|.+||..++.+|+.+.-.|.-.... +.+.+|..+..+.+.+.......+.|
T Consensus 8 ~~s~~EL~~~l~elk~ELf~LR~q~at----gql~n~~~ir~vRr~IARi~Tvl~er 60 (67)
T 2zjr_V 8 NLQATDFAKEIDARKKELMELRFQAAA----GQLAQPHRVRQLRREVAQLNTVKAEL 60 (67)
T ss_dssp TSCHHHHHHHHHTHHHHHHHHHHHHHH----SCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHHHh----CCCcccHHHHHHHHHHHHHHHHHHHH
Confidence 467788888888888887777754432 23456888888877765444444433
No 475
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=33.28 E-value=1.6e+02 Score=22.43 Aligned_cols=66 Identities=26% Similarity=0.354 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCH-----HHHHHHHHHHHHHHHHHHHHHHHhh
Q 027236 78 SEELNQMKEENAKLQEQLEEQRKAISKLEGEIRTLQSNLTL-----EQIREKEAQLVKEVKEMENKLAKLR 143 (226)
Q Consensus 78 ~ee~~~l~~~i~~l~~~l~~l~~~~k~l~~el~~l~~~~t~-----~el~~~i~~L~~e~~~l~~kL~~l~ 143 (226)
.+++..+...+..|...-....+.......+|+.|...+-. +.....+..|+..+..++.+|..-+
T Consensus 48 EeeL~~v~~nlKsLE~seekasqrEd~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~~~K 118 (155)
T 2efr_A 48 EEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQK 118 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 476
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=33.24 E-value=94 Score=25.67 Aligned_cols=65 Identities=18% Similarity=0.131 Sum_probs=37.5
Q ss_pred HHHHHHHH----hcCCCCcHHHHHH-------HHhcccccHHHHHHHHHHHHHcCCcceeec--CceeEEEeecCCCC
Q 027236 10 AIVLNYVN----EQNRPLNSQNVAD-------ALQKYNLKKAGIQKALDSLADNGKISFKEY--GKQKIYIARQDQFD 74 (226)
Q Consensus 10 ~~Il~y~~----~~nrPys~~di~~-------~l~~~~v~K~~v~k~L~~Lv~~g~i~~K~~--GK~kiY~~~Q~~~~ 74 (226)
..||..+. ..++||+..+|.. .+....++...+..+|+.|...|+|....- |+...|...+-.++
T Consensus 289 ~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~l~~L~~~gli~~~~~~~~~~g~y~~~~l~~~ 366 (386)
T 2qby_A 289 KLVLMAVVSISSEENVVSTTGAVYETYLNICKKLGVEAVTQRRVSDIINELDMVGILTAKVVNRGRYGKTKEIGLAVD 366 (386)
T ss_dssp HHHHHHHHHHC-----CEEHHHHHHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHTSEEEEECCCTTSCCCEEEEESSC
T ss_pred HHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCEEEEeecCCCCCCeEEEEeCCC
Confidence 34444444 3557888855532 221113456899999999999999987643 44445544443344
No 477
>4a0z_A Transcription factor FAPR; lipid homeostasis; HET: MLC; 1.90A {Staphylococcus aureus} PDB: 4a0y_A 4a0x_A* 4a12_A
Probab=33.18 E-value=42 Score=26.37 Aligned_cols=45 Identities=11% Similarity=0.135 Sum_probs=38.4
Q ss_pred chHHHHHHHHHHhcCCCCcHHHHHHHHhcccccHHHHHHHHHHHHHcCC
Q 027236 6 DNTEAIVLNYVNEQNRPLNSQNVADALQKYNLKKAGIQKALDSLADNGK 54 (226)
Q Consensus 6 ~ea~~~Il~y~~~~nrPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~ 54 (226)
++-+..|++++.+ |...+..++...| +|+.++|-.=|..|...++
T Consensus 11 ~eR~~~i~~~l~~-~~~~~~~~la~~~---~vs~~TiRrDl~eL~~~~l 55 (190)
T 4a0z_A 11 DKRREAIRQQIDS-NPFITDHELSDLF---QVSIQTIRLDRTYLNIPEL 55 (190)
T ss_dssp HHHHHHHHHHHHH-CTTCCHHHHHHHH---TSCHHHHHHHHHHHTCCCH
T ss_pred HHHHHHHHHHHHH-CCCEeHHHHHHHH---CCCHHHHHHHHHHhcCcch
Confidence 7788999999885 5567999998888 7999999999999988654
No 478
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=33.15 E-value=59 Score=17.37 Aligned_cols=20 Identities=35% Similarity=0.459 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 027236 124 KEAQLVKEVKEMENKLAKLR 143 (226)
Q Consensus 124 ~i~~L~~e~~~l~~kL~~l~ 143 (226)
.-..|+.+++.++.+|+.|.
T Consensus 9 kcaalesklqalekkleale 28 (31)
T 3ljm_A 9 KCAALESKLQALEKKLEALE 28 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444443
No 479
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=33.07 E-value=71 Score=20.17 Aligned_cols=13 Identities=15% Similarity=0.207 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHHH
Q 027236 122 REKEAQLVKEVKE 134 (226)
Q Consensus 122 ~~~i~~L~~e~~~ 134 (226)
..+|..|+.++..
T Consensus 42 ~~~v~~L~~e~~~ 54 (62)
T 1jnm_A 42 ASTANMLREQVAQ 54 (62)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHH
Confidence 3333333343333
No 480
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=33.01 E-value=65 Score=29.31 Aligned_cols=63 Identities=14% Similarity=0.230 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 027236 79 EELNQMKEENAKLQEQLEEQRKAISKLEGE---IRTLQSNLTLEQIREKEAQLVKEVKEMENKLAKLR 143 (226)
Q Consensus 79 ee~~~l~~~i~~l~~~l~~l~~~~k~l~~e---l~~l~~~~t~~el~~~i~~L~~e~~~l~~kL~~l~ 143 (226)
++...+..++.+|+++...+..++..+... ...+.. ...+|.++|.+|+.+..+++++|..+-
T Consensus 40 ~~~r~~~~~~~~l~~~rn~~sk~i~~~k~~~~~~~~l~~--~~~~l~~~i~~le~~~~~~~~~~~~~l 105 (485)
T 3qne_A 40 KEWVKLRFDLDEHNKKLNSVQKEIGKRFKAKEDAKDLIA--EKEKLSNEKKEIIEKEAEADKNLRSKI 105 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777788888888888777777665431 222222 245788899999999999999987663
No 481
>1sig_A Sigma70, RNA polymerase primary sigma factor; RNA polymerase sigma factor, transcription regulation; 2.60A {Escherichia coli} SCOP: a.177.1.1
Probab=32.97 E-value=2.2e+02 Score=23.87 Aligned_cols=54 Identities=17% Similarity=0.142 Sum_probs=39.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHh-Cccccccc
Q 027236 149 VKPEDRMAVEEMFLEKLSQWRKRKRMLRDIWDPIMENSPKNLKEFKEEL-GIEYDEDV 205 (226)
Q Consensus 149 vs~ee~~~~~~~~~~~~~~w~kRkri~~~i~~~i~e~~~~~~k~l~e~l-Gie~Ded~ 205 (226)
.+|..+..+...+.......+..- +.|...|.+.++|+.++|...+ |.++|.+-
T Consensus 152 l~~k~id~Lv~~lr~~~~~ir~~E---r~i~~l~v~~~~mpr~~fi~~f~g~e~~~~w 206 (339)
T 1sig_A 152 LVPKQFDYLVNSMRVMMDRVRTQE---RLIMKLCVEQCKMPKKNFITLFTGNETSDTW 206 (339)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHTTSCCCHHHHHHHHTTTCSSGGG
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHcCCCHHHHHHHcccccCcHHH
Confidence 568888888888776665555544 4445666687889999999876 77777644
No 482
>1zk8_A Transcriptional regulator, TETR family; TETR member,transcriptional regulator, STRU genomics, PSI, protein structure initiative; 2.15A {Bacillus cereus atcc 14579} SCOP: a.4.1.9 a.121.1.1
Probab=32.85 E-value=38 Score=24.78 Aligned_cols=15 Identities=20% Similarity=0.275 Sum_probs=6.4
Q ss_pred CCCCcchHHHHHHHH
Q 027236 1 MAPKSDNTEAIVLNY 15 (226)
Q Consensus 1 M~~kg~ea~~~Il~y 15 (226)
|||++...++.|++-
T Consensus 2 M~~r~~~~r~~Il~a 16 (183)
T 1zk8_A 2 MSPRIGLTLQKIVET 16 (183)
T ss_dssp ----CCCCHHHHHHH
T ss_pred CCchhHHHHHHHHHH
Confidence 666666666666553
No 483
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=32.61 E-value=96 Score=19.65 Aligned_cols=27 Identities=19% Similarity=0.286 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027236 85 KEENAKLQEQLEEQRKAISKLEGEIRT 111 (226)
Q Consensus 85 ~~~i~~l~~~l~~l~~~~k~l~~el~~ 111 (226)
..+...|..+...|..++..|..++..
T Consensus 29 e~~v~~L~~~n~~L~~ei~~L~~e~~~ 55 (63)
T 2wt7_A 29 QAETDQLEDEKSALQTEIANLLKEKEK 55 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444433333
No 484
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=32.41 E-value=2.6e+02 Score=24.54 Aligned_cols=28 Identities=25% Similarity=0.488 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 027236 89 AKLQEQLEEQRKAISKLEGEIRTLQSNL 116 (226)
Q Consensus 89 ~~l~~~l~~l~~~~k~l~~el~~l~~~~ 116 (226)
.++.+.+...+....+...++.......
T Consensus 370 ~~le~~~~~~~~~~~~~~~~~~~~~~~~ 397 (487)
T 3oja_A 370 KALDEQVSNGRRAHAELDGTLQQAVGQI 397 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHHhhhhhhHHHhhchh
Confidence 3444444445555555555555554443
No 485
>3u5c_Z RP45, S31, YS23, 40S ribosomal protein S25-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_V 3o30_Q 3o2z_Q 3u5g_Z
Probab=32.14 E-value=50 Score=23.80 Aligned_cols=47 Identities=26% Similarity=0.247 Sum_probs=34.8
Q ss_pred CCCCcHHHHHHHHhcccccHHHHHHHHHHHHHcCCcceeec-CceeEEEee
Q 027236 20 NRPLNSQNVADALQKYNLKKAGIQKALDSLADNGKISFKEY-GKQKIYIAR 69 (226)
Q Consensus 20 nrPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~K~~-GK~kiY~~~ 69 (226)
++-.+...|.+-| +|.-+...++|..|..+|+|..=.- ..|.||--+
T Consensus 57 ~KlITpsvlseRl---kI~gSLAR~aLreL~~kGlIk~V~kh~~q~IYTr~ 104 (108)
T 3u5c_Z 57 YRYVSVSVLVDRL---KIGGSLARIALRHLEKEGIIKPISKHSKQAIYTRA 104 (108)
T ss_dssp CSSBSHHHHHHTT---CCCTTHHHHHHHHHSSSSSCEEEECCSSCCEEECC
T ss_pred CeEEeHHHhhhhh---hhhHHHHHHHHHHHHHCCCEEEEecCCCEEEEecC
Confidence 3455555555555 7888999999999999999976543 467899763
No 486
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=32.08 E-value=71 Score=17.98 Aligned_cols=10 Identities=10% Similarity=0.192 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q 027236 85 KEENAKLQEQ 94 (226)
Q Consensus 85 ~~~i~~l~~~ 94 (226)
..+..+|-.+
T Consensus 7 E~kVEeLl~~ 16 (34)
T 2oxj_A 7 EXKVXELLXK 16 (34)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 3333333333
No 487
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=32.07 E-value=66 Score=21.31 Aligned_cols=36 Identities=14% Similarity=0.241 Sum_probs=24.0
Q ss_pred HHHHHHHHhcCCCCcHHHHHHHHhcccccHHHHHHHHHH
Q 027236 10 AIVLNYVNEQNRPLNSQNVADALQKYNLKKAGIQKALDS 48 (226)
Q Consensus 10 ~~Il~y~~~~nrPys~~di~~~l~~~~v~K~~v~k~L~~ 48 (226)
-.++.|+...+.++|..+|...+ ||+..+|...+..
T Consensus 26 vl~l~~~l~~~~~~s~~EIA~~l---gis~~tV~~~~~r 61 (87)
T 1tty_A 26 VLRMRYGLLDGKPKTLEEVGQYF---NVTRERIRQIEVK 61 (87)
T ss_dssp HHHHHHTTTTSSCCCHHHHHHHH---TCCHHHHHHHHHH
T ss_pred HHHHHHccCCCCCCCHHHHHHHH---CCCHHHHHHHHHH
Confidence 33445544455799999999988 6776666655443
No 488
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}
Probab=32.06 E-value=73 Score=27.03 Aligned_cols=44 Identities=14% Similarity=0.234 Sum_probs=37.8
Q ss_pred HHHHHHhcCCCCcHHHHHHHHhcccccHHHHHHHHHHHHHcCCccee
Q 027236 12 VLNYVNEQNRPLNSQNVADALQKYNLKKAGIQKALDSLADNGKISFK 58 (226)
Q Consensus 12 Il~y~~~~nrPys~~di~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~K 58 (226)
|++.+...+.|.|+.+|...+ |+....+...|..|+.-|++...
T Consensus 40 ifd~L~~~~~~~t~~eLA~~~---g~~~~~l~rlLr~l~~~g~l~~~ 83 (363)
T 3dp7_A 40 IFQLLSGKREGYTLQEISGRT---GLTRYAAQVLLEASLTIGTILLE 83 (363)
T ss_dssp HHHHHHTCTTCBCHHHHHHHH---TCCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHhcCCCCCHHHHHHHh---CcCHHHHHHHHHHHhhCCCeEec
Confidence 677777767899999998777 78899999999999999999664
No 489
>1iuy_A Cullin-3 homologue; winged helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.34
Probab=31.94 E-value=75 Score=22.00 Aligned_cols=53 Identities=11% Similarity=0.244 Sum_probs=37.8
Q ss_pred hHHHHHHHHHHhcCCCCcHHHH----HHHHhc-ccccHHHHHHHHHHHHHcCCcceeec
Q 027236 7 NTEAIVLNYVNEQNRPLNSQNV----ADALQK-YNLKKAGIQKALDSLADNGKISFKEY 60 (226)
Q Consensus 7 ea~~~Il~y~~~~nrPys~~di----~~~l~~-~~v~K~~v~k~L~~Lv~~g~i~~K~~ 60 (226)
.-.+.|...|+...+ .+.+++ ...|++ ...+-+.+++.++.|++.+.|.-..-
T Consensus 26 ~i~AaIVRIMK~rK~-l~h~~Lv~ev~~ql~~rF~p~~~~IKk~IE~LIereYleR~~~ 83 (92)
T 1iuy_A 26 EIEAAIVRIMKSRKK-MQHNVLVAEVTQQLKARFLPSPVVIKKRIEGLIEREYLARTPE 83 (92)
T ss_dssp HHHHHHHHHHHHHCE-EEHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHTTSEEECSS
T ss_pred Heeeeeeehhhcccc-ccHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhhhhhhhcCCC
Confidence 456788888887666 443444 555544 24678999999999999998877643
No 490
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=31.74 E-value=94 Score=22.37 Aligned_cols=20 Identities=25% Similarity=0.320 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 027236 91 LQEQLEEQRKAISKLEGEIR 110 (226)
Q Consensus 91 l~~~l~~l~~~~k~l~~el~ 110 (226)
..+++..|+..+..++.+|.
T Consensus 94 e~~~~~~L~~~i~~Le~el~ 113 (117)
T 3kin_B 94 EKEKNKALKSVIQHLEVELN 113 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444333
No 491
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=31.74 E-value=82 Score=20.57 Aligned_cols=17 Identities=24% Similarity=0.364 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 027236 119 EQIREKEAQLVKEVKEM 135 (226)
Q Consensus 119 ~el~~~i~~L~~e~~~l 135 (226)
.|+...|..|+.++..+
T Consensus 59 ~elrr~iq~L~~el~sl 75 (77)
T 3trt_A 59 TEYRRQVQSLTMEVDAL 75 (77)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 45556666666666554
No 492
>4a17_U RPL35, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_U 4a1c_U 4a1e_U
Probab=31.64 E-value=1.5e+02 Score=21.71 Aligned_cols=53 Identities=19% Similarity=0.103 Sum_probs=31.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 027236 116 LTLEQIREKEAQLVKEVKEMENKLAKLRGGVTLVKPEDRMAVEEMFLEKLSQWRKR 171 (226)
Q Consensus 116 ~t~~el~~~i~~L~~e~~~l~~kL~~l~~~~~~vs~ee~~~~~~~~~~~~~~w~kR 171 (226)
.|.+||.+++.+|+.|.-.|.-.... |+..-+|..+..+.+.+.......+.|
T Consensus 13 ~s~eEL~~~L~eLK~ELf~LRfq~at---ggqlen~~rIr~vRRdIARi~Tvl~er 65 (124)
T 4a17_U 13 QTEEQLVGELGKLQTELSQLRIAKIA---GGTANKLGRIGIVRKAIAKYLTIINEK 65 (124)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHh---cCccCCcHHHHHHHHHHHHHHHHHHHH
Confidence 46667777777777776666554322 333445667777777766555555544
No 493
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=31.56 E-value=73 Score=17.94 Aligned_cols=19 Identities=11% Similarity=0.223 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 027236 121 IREKEAQLVKEVKEMENKL 139 (226)
Q Consensus 121 l~~~i~~L~~e~~~l~~kL 139 (226)
|.+.+++|-.++.+|+...
T Consensus 6 LEdkVEeLl~~~~~Le~eV 24 (34)
T 2hy6_A 6 LADAVEELASANYHLANAV 24 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHH
Confidence 3333444444444444333
No 494
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=31.56 E-value=29 Score=25.48 Aligned_cols=46 Identities=24% Similarity=0.406 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhccCCH---HHHHHHHHHHHHHHHHHHHHHHHhh
Q 027236 98 QRKAISKLEGEIRTLQSNLTL---EQIREKEAQLVKEVKEMENKLAKLR 143 (226)
Q Consensus 98 l~~~~k~l~~el~~l~~~~t~---~el~~~i~~L~~e~~~l~~kL~~l~ 143 (226)
++++++.|...|..++-.+.. ..-...|.++..|+..|..++..++
T Consensus 8 ~K~Eiq~L~drLD~~~rKlaaa~~rgd~~~i~qf~~E~~~l~k~I~~lk 56 (123)
T 2lf0_A 8 EKNEIKRLSDRLDAIRHQQADLSLVEAADKYAELEKEKATLEAEIARLR 56 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCTTTCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHH
No 495
>3vlc_E Golgi to ER traffic protein 1; ATPase, membrane protein insertion, ATP binding, membrane PR binding; HET: ADP; 4.50A {Saccharomyces cerevisiae}
Probab=31.53 E-value=60 Score=22.76 Aligned_cols=47 Identities=13% Similarity=0.176 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCH---HHHHHHHHHHHHHHHHHHHHH
Q 027236 93 EQLEEQRKAISKLEGEIRTLQSNLTL---EQIREKEAQLVKEVKEMENKL 139 (226)
Q Consensus 93 ~~l~~l~~~~k~l~~el~~l~~~~t~---~el~~~i~~L~~e~~~l~~kL 139 (226)
.+...++.++..+..|+....+.-.- +.|..++..|..+++.+...|
T Consensus 30 ~~~~~lk~E~~~lk~E~~stSaQDEFAKWAKL~Rk~DKl~~ele~l~~~L 79 (94)
T 3vlc_E 30 KKYLAKVKERHELKEFNNSISAQDNYAKWTKNNRKLDSLDKEINNLKDEI 79 (94)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCTTTCHHHHHHHHHHHHHHHHHTTTHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 496
>2wbm_A MTHSBDS, ribosome maturation protein SDO1 homolog; shwachman-bodian-diamond syndrome protein; 1.75A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=31.46 E-value=76 Score=26.30 Aligned_cols=44 Identities=9% Similarity=0.293 Sum_probs=0.0
Q ss_pred chHHHHHHHHHHh------cCCCCcHHHHHHHHhcccccH-------HHHHHHHHHH
Q 027236 6 DNTEAIVLNYVNE------QNRPLNSQNVADALQKYNLKK-------AGIQKALDSL 49 (226)
Q Consensus 6 ~ea~~~Il~y~~~------~nrPys~~di~~~l~~~~v~K-------~~v~k~L~~L 49 (226)
++....|..|+.. +||||...-|+.+|...+++- .++.+++..|
T Consensus 118 E~k~r~Ii~~Ia~~~VnP~T~~P~p~~~IE~Am~e~~~~Vdp~ksak~Qalevik~L 174 (252)
T 2wbm_A 118 EDKRLKIINKIAREAINPQNGLPHPPKRIEKAMEEARVHVDPFKTVDEQVNIVLKAI 174 (252)
T ss_dssp HHHHHHHHHHHHHHEECTTTCCCCCHHHHHHHHHHTTCCCCSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCCCCcCCHHHHHHHHHhCCcccCCCCCHHHHHHHHHHHH
No 497
>1ldd_A APC2WHB, anaphase promoting complex; ubiquitin, ligase, ubiquitination, ring finger, winged-helix; 2.00A {Saccharomyces cerevisiae} SCOP: a.4.5.34
Probab=31.39 E-value=46 Score=22.27 Aligned_cols=29 Identities=24% Similarity=0.512 Sum_probs=0.0
Q ss_pred ccHHHHHHHHHHHHHcCCcceeecCceeE
Q 027236 37 LKKAGIQKALDSLADNGKISFKEYGKQKI 65 (226)
Q Consensus 37 v~K~~v~k~L~~Lv~~g~i~~K~~GK~ki 65 (226)
|+-..++..|+.||.+|+|.+-.-|.-++
T Consensus 45 it~~eL~~fL~~~v~e~kL~~~~gG~YkL 73 (74)
T 1ldd_A 45 ITLQQLEGYLNTLADEGRLKYIANGSYEI 73 (74)
T ss_dssp CCHHHHHHHHHHHHHTTSEECCTTTEEEE
T ss_pred CCHHHHHHHHHHHHhCCeEEEeCCCEEeC
No 498
>1q06_A Transcriptional regulator CUER; MERR family transcriptional regulator, copper efflux regulator; 2.07A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q05_A 1q07_A
Probab=31.12 E-value=1.5e+02 Score=21.48 Aligned_cols=70 Identities=11% Similarity=0.134 Sum_probs=0.0
Q ss_pred CCCCcHHHH-----HHHHhcccccHHHHHHHHHHHHHcCCcceeecCceeEEEeecCCCCCCCHHHHHHHHHHHHHHHHH
Q 027236 20 NRPLNSQNV-----ADALQKYNLKKAGIQKALDSLADNGKISFKEYGKQKIYIARQDQFDIPNSEELNQMKEENAKLQEQ 94 (226)
Q Consensus 20 nrPys~~di-----~~~l~~~~v~K~~v~k~L~~Lv~~g~i~~K~~GK~kiY~~~Q~~~~~~~~ee~~~l~~~i~~l~~~ 94 (226)
+|-|+..|| ...|...|++-..+...|+...+ -+....+-...+..++..+.++
T Consensus 36 ~R~Y~~~dl~~l~~I~~lr~~G~sl~eI~~~l~~~~~---------------------~~~~~~~~~~~l~~~~~~l~~~ 94 (135)
T 1q06_A 36 YRTYTQQHLNELTLLRQARQVGFNLEESGELVNLFND---------------------PQRHSADVKRRTLEKVAEIERH 94 (135)
T ss_dssp CEECCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHC---------------------TTCCHHHHHHHHHHHHHHHHHH
T ss_pred CeeeCHHHHHHHHHHHHHHHCCCCHHHHHHHHHhhhc---------------------CCchHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHH
Q 027236 95 LEEQRKAISKLEGEIR 110 (226)
Q Consensus 95 l~~l~~~~k~l~~el~ 110 (226)
+..++.....+..-+.
T Consensus 95 i~~L~~~~~~L~~~~~ 110 (135)
T 1q06_A 95 IEELQSMRDQLLALAN 110 (135)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
No 499
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=31.05 E-value=1.5e+02 Score=21.39 Aligned_cols=65 Identities=14% Similarity=0.218 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--CCHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 027236 79 EELNQMKEENAKLQEQLEEQRKAISKLEGEIRTLQSN--LTLEQIREKEAQLVKEVKEMENKLAKLR 143 (226)
Q Consensus 79 ee~~~l~~~i~~l~~~l~~l~~~~k~l~~el~~l~~~--~t~~el~~~i~~L~~e~~~l~~kL~~l~ 143 (226)
.+...+......+++++..+..+...|+..+..-+.. +-..+|...+..-+..+.+|+.....++
T Consensus 6 ~~~~~lq~~~~ql~~qL~k~~~~r~~Le~~w~~k~E~~k~qV~~L~~~~q~sE~~L~~Lqq~fsq~q 72 (112)
T 1x79_B 6 DQVKKLQLMLRQANDQLEKTMKDKQELEDFIKQSSEDSSHQISALVLRAQASEILLEELQQGLSQAK 72 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 500
>3axj_A GM27569P, translin; translin/TRAX heterodimer, passenger RNA cleavage, RNAse, DN protein; 2.10A {Drosophila melanogaster} PDB: 2qva_A 2qrx_A 3riu_A
Probab=31.01 E-value=2.2e+02 Score=23.25 Aligned_cols=131 Identities=14% Similarity=0.081 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCHHHHHHH
Q 027236 78 SEELNQMKEENAKLQEQLEEQRKAISKLEGEIRTLQSNLTLEQIREKEAQLVKEVKEMENKLAKLRGGVTLVKPEDRMAV 157 (226)
Q Consensus 78 ~ee~~~l~~~i~~l~~~l~~l~~~~k~l~~el~~l~~~~t~~el~~~i~~L~~e~~~l~~kL~~l~~~~~~vs~ee~~~~ 157 (226)
..++++.+...+.+..-...+....+....-|-...+.+++ +..-+.+.+..+.+..+.+..+..- +.+...=+.
T Consensus 28 ~~~Ld~~~d~REriik~sRdIt~~sk~~I~~Lhr~~~~~~~--~~~~~~eA~~~l~~i~~~~~~L~~~---l~~~~~yrY 102 (249)
T 3axj_A 28 QKYIDNEQEVRENIRIVVREIEHLSKEAQIKLQIIHSDLSQ--ISAACGLARKQVELCAQKYQKLAEL---VPAGQYYRY 102 (249)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGTCGGG--HHHHHHHHHHHHHHHHHHHHHHHHH---SCTTCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccc--chHHHHHHHHHHHHHHHHHHHHHHH---hccCchHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhCcccccccccchhhchhhhh
Q 027236 158 EEMFLEKLSQWRKRKRMLRDIWDPIMENSPKNLKEFKEELGIEYDEDVGVSLQSFSDLLQ 217 (226)
Q Consensus 158 ~~~~~~~~~~w~kRkri~~~i~~~i~e~~~~~~k~l~e~lGie~Ded~~v~~~~~~~~~~ 217 (226)
...|.....++..= ..+..|+..+.-.+.+++.+.||++.+...++.++...=|++
T Consensus 103 ~~~~s~~lQE~VEA----~~f~~yL~~~~L~t~eev~~~L~~~~~~~~~f~v~~edYLlG 158 (249)
T 3axj_A 103 SDHWTFITQRLIFI----IALVIYLEAGFLVTRETVAEMLGLKISQSEGFHLDVEDYLLG 158 (249)
T ss_dssp GGGTHHHHHHHHHH----HHHHHHHHHSSCCCHHHHHHHHTCBSSTTTSSBCCHHHHHHH
T ss_pred hhhccHHHHHHHHH----HHHHHHHcCCCCCCHHHHHHHhccccCCCcccccCHHHHHHH
Done!