BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027237
(226 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3TRD|A Chain A, Structure Of An Alpha-Beta Serine Hydrolase Homologue From
Coxiella Burnetii
Length = 208
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 62/144 (43%), Gaps = 7/144 (4%)
Query: 48 LGKALDAVEVVTFDYPYIAGGKRKAP-PKAEKLVEFHTDVVKGAVAKFPGHPLILAGKSM 106
L KALD + + T + + GK + VE V++ + + LAG S
Sbjct: 55 LAKALDELGLKTVRFNFRGVGKSQGRYDNGVGEVEDLKAVLRWVEHHWSQDDIWLAGFSF 114
Query: 107 GSRVSCMVACKEDIAASAVLCLGYPLKGMNGAVRDELLLQITVPIMFVQGSKDGLCPLDK 166
G+ +S VA + +A + +G L Q+ P + VQG +D + P ++
Sbjct: 115 GAYISAKVAYDQKVAQLISVAPPVFYEGFAS------LTQMASPWLIVQGDQDEVVPFEQ 168
Query: 167 LEAVRKKMKSLSELHLIDGGDHSF 190
++A ++ S E ++ G H F
Sbjct: 169 VKAFVNQISSPVEFVVMSGASHFF 192
>pdb|3F67|A Chain A, Crystal Structure Of Putative Dienelactone Hydrolase From
Klebsiella Pneumoniae Subsp. Pneumoniae Mgh 78578
Length = 241
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 58/126 (46%), Gaps = 10/126 (7%)
Query: 74 PKAEKLVEFHTDVVKGAVAKFPG--HPLILAGKSMGSRVSCMVACKEDIAASAVLCLGYP 131
P A+ L + D V A+ G H L++ G G R++ + A +AV G
Sbjct: 92 PDAQVLADL--DHVASWAARHGGDAHRLLITGFCWGGRITWLYAAHNPQLKAAVAWYGKL 149
Query: 132 L--KGMNGAVRD-ELLLQITVPIMFVQGSKDGLCPLDKLEAVRKKMK---SLSELHLIDG 185
+ K +N ++ + + P++ + G+KD P D +E R+ ++ + +E+ +
Sbjct: 150 VGEKSLNSPKHPVDIAVDLNAPVLGLYGAKDASIPQDTVETXRQALRAANATAEIVVYPE 209
Query: 186 GDHSFK 191
DH+F
Sbjct: 210 ADHAFN 215
>pdb|1UFO|A Chain A, Crystal Structure Of Tt1662 From Thermus Thermophilus
pdb|1UFO|B Chain B, Crystal Structure Of Tt1662 From Thermus Thermophilus
pdb|1UFO|C Chain C, Crystal Structure Of Tt1662 From Thermus Thermophilus
pdb|1UFO|D Chain D, Crystal Structure Of Tt1662 From Thermus Thermophilus
pdb|1UFO|E Chain E, Crystal Structure Of Tt1662 From Thermus Thermophilus
pdb|1UFO|F Chain F, Crystal Structure Of Tt1662 From Thermus Thermophilus
Length = 238
Score = 36.2 bits (82), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 67/158 (42%), Gaps = 35/158 (22%)
Query: 49 GKALDAVEVVTFDYPYIAGGKRKAPPKAEKLVEFHTDVVKGAVA--------------KF 94
G A ++ FD P G+R+ PP + K + +V + A+ +F
Sbjct: 46 GYAERGFLLLAFDAP--RHGEREGPPPSSKSPRYVEEVYRVALGFKEEARRVAEEAERRF 103
Query: 95 PGHPLILAGKSMGSRVSCMVACKEDIAASAVLCL---GYPLKGMNG-AVRDELLLQIT-- 148
G PL LAG S+G+ V+ ++ E VL G+P K G V D +L +
Sbjct: 104 -GLPLFLAGGSLGAFVAHLL-LAEGFRPRGVLAFIGSGFPXKLPQGQVVEDPGVLALYQA 161
Query: 149 -----------VPIMFVQGSKDGLCPLDKLEAVRKKMK 175
VP++ + GS+D + PL + E + ++
Sbjct: 162 PPATRGEAYGGVPLLHLHGSRDHIVPLARXEKTLEALR 199
>pdb|3C5V|A Chain A, Pp2a-Specific Methylesterase Apo Form (Pme)
Length = 316
Score = 32.3 bits (72), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 52/125 (41%), Gaps = 13/125 (10%)
Query: 13 KNECGDDT-------SSSPVVVFAHGAGAPSSSDWMIKWKDMLGKALDAVEVVTFDYPYI 65
+NE G DT S PV++ HG G S+ W + ++ + +V D
Sbjct: 21 ENETGKDTFRVYKSGSEGPVLLLLHGGGH-SALSWAVFTAAIISRV--QCRIVALDLRSH 77
Query: 66 AGGKRKAPP--KAEKLVEFHTDVVKGAVAKFPGHPLILAGKSMGSRVSCMVACKEDIAAS 123
K K P AE + + +VV+ P P++L G SMG ++ A + +
Sbjct: 78 GETKVKNPEDLSAETMAKDVGNVVEAMYGDLPP-PIMLIGHSMGGAIAVHTASSNLVPSL 136
Query: 124 AVLCL 128
LC+
Sbjct: 137 LGLCM 141
>pdb|3JWE|A Chain A, Crystal Structure Of Human Mono-Glyceride Lipase In
Complex With Sar629
pdb|3JWE|B Chain B, Crystal Structure Of Human Mono-Glyceride Lipase In
Complex With Sar629
Length = 320
Score = 32.0 bits (71), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 50/101 (49%), Gaps = 18/101 (17%)
Query: 25 VVVFAHGAGAPSSSDWMIKWKDMLGKALDAVEVVTFDYPYIAGGKRKAPPKAEKLV--EF 82
++ +HGAG S ++++ L + L ++++ F + ++ G+ + E++V +F
Sbjct: 61 LIFVSHGAGEHSG-----RYEE-LARMLMGLDLLVFAHDHVGHGQSEG----ERMVVSDF 110
Query: 83 HTDV------VKGAVAKFPGHPLILAGKSMGSRVSCMVACK 117
H V V +PG P+ L G SMG ++ + A +
Sbjct: 111 HVFVRDVLQHVDSMQKDYPGLPVFLLGHSMGGAIAILTAAE 151
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
Query: 126 LCLGYPLKGMNGAVRDELLL-QITVPIMFVQGSKDGLC 162
+C G L +N R E L ++TVP + +QGS D LC
Sbjct: 224 VCFGIQL--LNAVSRVERALPKLTVPFLLLQGSADRLC 259
>pdb|3HJU|A Chain A, Crystal Structure Of Human Monoglyceride Lipase
pdb|3HJU|B Chain B, Crystal Structure Of Human Monoglyceride Lipase
Length = 342
Score = 32.0 bits (71), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 47/101 (46%), Gaps = 18/101 (17%)
Query: 25 VVVFAHGAGAPSSSDWMIKWKDMLGKALDAVEVVTFDYPYIAGGKRKAPPKAEKLV--EF 82
++ +HGAG S + L + L ++++ F + ++ G+ + E++V +F
Sbjct: 62 LIFVSHGAGEHSGR------YEELARMLMGLDLLVFAHDHVGHGQSEG----ERMVVSDF 111
Query: 83 HTDV------VKGAVAKFPGHPLILAGKSMGSRVSCMVACK 117
H V V +PG P+ L G SMG ++ + A +
Sbjct: 112 HVFVRDVLQHVDSMQKDYPGLPVFLLGHSMGGAIAILTAAE 152
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
Query: 126 LCLGYPLKGMNGAVRDELLL-QITVPIMFVQGSKDGLC 162
+C G L +N R E L ++TVP + +QGS D LC
Sbjct: 225 VCFGIQL--LNAVSRVERALPKLTVPFLLLQGSADRLC 260
>pdb|3PE6|A Chain A, Crystal Structure Of A Soluble Form Of Human Mgll In
Complex With An Inhibitor
Length = 303
Score = 31.6 bits (70), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 50/102 (49%), Gaps = 18/102 (17%)
Query: 25 VVVFAHGAGAPSSSDWMIKWKDMLGKALDAVEVVTFDYPYIAGGKRKAPPKAEKLV--EF 82
++ +HGAG S ++++ L + L ++++ F + ++ G+ + E++V +F
Sbjct: 44 LIFVSHGAGEHSG-----RYEE-LARMLMGLDLLVFAHDHVGHGQSEG----ERMVVSDF 93
Query: 83 HTDV------VKGAVAKFPGHPLILAGKSMGSRVSCMVACKE 118
H V V +PG P+ L G SMG ++ + A +
Sbjct: 94 HVFVRDVLQHVDSMQKDYPGLPVFLLGHSMGGAIAILTAAER 135
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
Query: 126 LCLGYPLKGMNGAVRDELLL-QITVPIMFVQGSKDGLC 162
+C G L +N R E L ++TVP + +QGS D LC
Sbjct: 207 VCFGIQL--LNAVSRVERALPKLTVPFLLLQGSADRLC 242
>pdb|3C5W|P Chain P, Complex Between Pp2a-Specific Methylesterase Pme-1 And
Pp2a Core Enzyme
Length = 310
Score = 31.2 bits (69), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 52/125 (41%), Gaps = 13/125 (10%)
Query: 13 KNECGDDT-------SSSPVVVFAHGAGAPSSSDWMIKWKDMLGKALDAVEVVTFDYPYI 65
+NE G DT S PV++ HG G S+ W + ++ + +V D
Sbjct: 25 ENETGKDTFRVYKSGSEGPVLLLLHGGGH-SALSWAVFTAAIISRV--QCRIVALDLRSH 81
Query: 66 AGGKRKAPP--KAEKLVEFHTDVVKGAVAKFPGHPLILAGKSMGSRVSCMVACKEDIAAS 123
K K P AE + + +VV+ P P++L G +MG ++ A + +
Sbjct: 82 GETKVKNPEDLSAETMAKDVGNVVEAMYGDLPP-PIMLIGHAMGGAIAVHTASSNLVPSL 140
Query: 124 AVLCL 128
LC+
Sbjct: 141 LGLCM 145
>pdb|2VJY|A Chain A, Pyruvate Decarboxylase From Kluyveromyces Lactis In
Complex With The Substrate Analogue Methyl
Acetylphosphonate
pdb|2VJY|B Chain B, Pyruvate Decarboxylase From Kluyveromyces Lactis In
Complex With The Substrate Analogue Methyl
Acetylphosphonate
pdb|2VJY|C Chain C, Pyruvate Decarboxylase From Kluyveromyces Lactis In
Complex With The Substrate Analogue Methyl
Acetylphosphonate
pdb|2VJY|D Chain D, Pyruvate Decarboxylase From Kluyveromyces Lactis In
Complex With The Substrate Analogue Methyl
Acetylphosphonate
pdb|2VK4|A Chain A, Crystal Structure Of Pyruvate Decarboxylase From
Kluyveromyces Lactis
pdb|2VK4|B Chain B, Crystal Structure Of Pyruvate Decarboxylase From
Kluyveromyces Lactis
pdb|2VK4|C Chain C, Crystal Structure Of Pyruvate Decarboxylase From
Kluyveromyces Lactis
pdb|2VK4|D Chain D, Crystal Structure Of Pyruvate Decarboxylase From
Kluyveromyces Lactis
Length = 563
Score = 30.0 bits (66), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 10/64 (15%)
Query: 48 LGKALDAVEVVTFDYPYIAGGKRKAPPKAEKLVEFHTDVVKGAVAKFPGHPLILAGKSMG 107
+G L +F Y Y K + +VEFH+D K A FPG + A + +
Sbjct: 285 VGALLSDFNTGSFSYSY----------KTKNIVEFHSDYTKIRSATFPGVQMKFALQKLL 334
Query: 108 SRVS 111
++V+
Sbjct: 335 TKVA 338
>pdb|3PF9|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant
pdb|3PFB|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With
Ethylferulate
pdb|3PFB|B Chain B, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With
Ethylferulate
pdb|3PFC|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With Ferulic
Acid
pdb|3S2Z|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With Caffeic
Acid
pdb|3S2Z|B Chain B, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With Caffeic
Acid
Length = 270
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 142 ELLLQITVPIMFVQGSKDGLCPLDKLEAVRKKMKSLSELHLIDGGDHSF 190
E+ Q T P+ + G+ D + + + + ++ S LHLI+G DH F
Sbjct: 201 EVSAQFTKPVCLIHGTDDTVVSPNASKKYDQIYQN-STLHLIEGADHCF 248
>pdb|3PF8|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536
pdb|3PF8|B Chain B, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536
Length = 270
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 142 ELLLQITVPIMFVQGSKDGLCPLDKLEAVRKKMKSLSELHLIDGGDHSF 190
E+ Q T P+ + G+ D + + + + ++ S LHLI+G DH F
Sbjct: 201 EVSAQFTKPVCLIHGTDDTVVSPNASKKYDQIYQN-STLHLIEGADHCF 248
>pdb|3QM1|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With
Ethylferulate, Form Ii
Length = 265
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 142 ELLLQITVPIMFVQGSKDGLCPLDKLEAVRKKMKSLSELHLIDGGDHSF 190
E+ Q T P+ + G+ D + + + + ++ S LHLI+G DH F
Sbjct: 201 EVSAQFTKPVCLIHGTDDTVVSPNASKKYDQIYQN-STLHLIEGADHCF 248
>pdb|3JW8|A Chain A, Crystal Structure Of Human Mono-Glyceride Lipase
pdb|3JW8|B Chain B, Crystal Structure Of Human Mono-Glyceride Lipase
Length = 320
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
Query: 126 LCLGYPLKGMNGAVRDELLL-QITVPIMFVQGSKDGLC 162
+C G L +N R E L ++TVP + +QGS D LC
Sbjct: 224 VCFGIQL--LNAVSRVERALPKLTVPFLLLQGSADRLC 259
>pdb|1QTR|A Chain A, Crystal Structure Analysis Of The Prolyl Aminopeptidase
From Serratia Marcescens
pdb|1WM1|A Chain A, Crystal Structure Of Prolyl Aminopeptidase, Complex With
Pro-tboda
pdb|1X2B|A Chain A, The Crystal Structure Of Prolyl Aminopeptidase Complexed
With Sar-Tboda
pdb|1X2E|A Chain A, The Crystal Structure Of Prolyl Aminopeptidase Complexed
With Ala-Tboda
Length = 317
Score = 26.9 bits (58), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 5/54 (9%)
Query: 141 DELLLQI----TVPIMFVQGSKDGLCPLDKLEAVRKKMKSLSELHLIDGGDHSF 190
D+LL + +P + V G D C + + K +ELH+++G HS+
Sbjct: 246 DQLLRNVPLIRHIPAVIVHGRYDMACQVQNAWDLAKAWPE-AELHIVEGAGHSY 298
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,809,371
Number of Sequences: 62578
Number of extensions: 277267
Number of successful extensions: 681
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 674
Number of HSP's gapped (non-prelim): 23
length of query: 226
length of database: 14,973,337
effective HSP length: 95
effective length of query: 131
effective length of database: 9,028,427
effective search space: 1182723937
effective search space used: 1182723937
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)