BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027238
(226 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|224137478|ref|XP_002327136.1| light-harvesting complex I protein Lhca5 [Populus trichocarpa]
gi|222835451|gb|EEE73886.1| light-harvesting complex I protein Lhca5 [Populus trichocarpa]
Length = 266
Score = 358 bits (918), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 178/226 (78%), Positives = 197/226 (87%), Gaps = 3/226 (1%)
Query: 1 MAVAVGRGFLLQPSSSSSFIC--NDVNKSSIGITSAFLPAKSGTTRRYLATVVRAQQRPT 58
MAVA+GR F++QP SSS ++NKSS G FLPAK +TR VV AQQRPT
Sbjct: 1 MAVAMGRPFVIQPCLSSSLCSLSKNINKSSFGAAETFLPAKPSSTR-CTPVVVHAQQRPT 59
Query: 59 WLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLL 118
WLPG+DPPPYLDGTLAGDFGFDPLGLGEDP+SL+WYVQAELVHARFAMAGVAGILFTDLL
Sbjct: 60 WLPGLDPPPYLDGTLAGDFGFDPLGLGEDPQSLKWYVQAELVHARFAMAGVAGILFTDLL 119
Query: 119 RVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFG 178
RVTGIR+LPVWYEAGAV+F+FASTRTL +VQLLLMGFAETKRYMD++SPGSQ KEGSFFG
Sbjct: 120 RVTGIRKLPVWYEAGAVKFEFASTRTLIVVQLLLMGFAETKRYMDFVSPGSQAKEGSFFG 179
Query: 179 LEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
LE+ALEGLEPGYPGGPLLNPLGLA+DI NA WKLKEIKNG + +V
Sbjct: 180 LESALEGLEPGYPGGPLLNPLGLARDIENAHVWKLKEIKNGRLAMV 225
>gi|225458605|ref|XP_002284724.1| PREDICTED: chlorophyll a-b binding protein 4, chloroplastic [Vitis
vinifera]
gi|302142320|emb|CBI19523.3| unnamed protein product [Vitis vinifera]
Length = 264
Score = 355 bits (911), Expect = 7e-96, Method: Compositional matrix adjust.
Identities = 170/224 (75%), Positives = 193/224 (86%)
Query: 1 MAVAVGRGFLLQPSSSSSFICNDVNKSSIGITSAFLPAKSGTTRRYLATVVRAQQRPTWL 60
MA+ VG GFL+QPSSS S + + ++ + FLPA+ G +R TVV+AQQRPTWL
Sbjct: 1 MAITVGTGFLVQPSSSLSLLGRKSCRPTLDVAYRFLPARPGPSRFSHGTVVQAQQRPTWL 60
Query: 61 PGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRV 120
PG+DPPPYL+GTLAGDFGFDPLGLGEDPE+LRWYVQAELVHARFAMAGVAGIL TDLLRV
Sbjct: 61 PGLDPPPYLNGTLAGDFGFDPLGLGEDPENLRWYVQAELVHARFAMAGVAGILVTDLLRV 120
Query: 121 TGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLE 180
TGI LPVWYEAGAV+F+FAST LFIVQL+LMGF ETKRYMD+ +PGSQ KEGSFFGLE
Sbjct: 121 TGISNLPVWYEAGAVKFEFASTEALFIVQLILMGFVETKRYMDFTNPGSQAKEGSFFGLE 180
Query: 181 AALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
AALEGLEPGYPGGPLLNPLGLA+DI+NA +WKLKEIKNG + +V
Sbjct: 181 AALEGLEPGYPGGPLLNPLGLARDIKNAHDWKLKEIKNGRLAMV 224
>gi|255538312|ref|XP_002510221.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223550922|gb|EEF52408.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 269
Score = 347 bits (889), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 170/228 (74%), Positives = 195/228 (85%), Gaps = 4/228 (1%)
Query: 1 MAVAVGRGFLLQPSSSSS--FICNDVNKSSIGITSAF--LPAKSGTTRRYLATVVRAQQR 56
MAVA+ R + QP SSSS F ++NKSS + F + S ++R Y VVRAQQR
Sbjct: 1 MAVAMVRALVFQPWSSSSLCFTSKNINKSSSVVVDTFWSSKSVSTSSRCYTRAVVRAQQR 60
Query: 57 PTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTD 116
PTWLPG+D PPYLDGTLAGD+GFDPLGLGEDPESL+WYVQAELVHARFAM G+AGILFTD
Sbjct: 61 PTWLPGLDSPPYLDGTLAGDYGFDPLGLGEDPESLKWYVQAELVHARFAMLGIAGILFTD 120
Query: 117 LLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSF 176
LLRVTGIR+LPVWYEAGAV+++FASTRTL +VQLL MG+AET+RYMDY+SPGSQ KEGSF
Sbjct: 121 LLRVTGIRKLPVWYEAGAVKYEFASTRTLLVVQLLWMGYAETRRYMDYVSPGSQNKEGSF 180
Query: 177 FGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
FG+EAALEGLEPGYPGGPLLNP GLAKDIR+AR+WKLKEIKNG + +V
Sbjct: 181 FGMEAALEGLEPGYPGGPLLNPFGLAKDIRSARDWKLKEIKNGRLAMV 228
>gi|356519222|ref|XP_003528272.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
[Glycine max]
Length = 263
Score = 324 bits (830), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 158/224 (70%), Positives = 184/224 (82%), Gaps = 2/224 (0%)
Query: 1 MAVAVGRGFLLQPSSSSSFICNDVNKSSIGITSAFLPAKSGTTRRYLATVVRAQQRPTWL 60
MAVA+GR F +QP S F +++ S ++L + T RY T V AQQRPTWL
Sbjct: 1 MAVAIGRSFSIQPGSL--FNNKSLDRGSPAGRLSWLGDGAAATPRYRQTCVGAQQRPTWL 58
Query: 61 PGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRV 120
PG+DPPP+LDGTLAGDFGFDPLGL EDP SLRWYVQAELVH RFAM GV GIL TDLLRV
Sbjct: 59 PGLDPPPHLDGTLAGDFGFDPLGLAEDPASLRWYVQAELVHCRFAMLGVFGILVTDLLRV 118
Query: 121 TGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLE 180
TGI ++PVW+EAGAV++ FA+T+TLF+VQL+LMGF ETKRYMD++SPGSQ KEGSFFGLE
Sbjct: 119 TGISKIPVWFEAGAVKYDFANTKTLFLVQLVLMGFVETKRYMDFVSPGSQAKEGSFFGLE 178
Query: 181 AALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
A+L+GLEPGYPGGPLLNPLGLAKDI NA +WKLKEIKNG + +V
Sbjct: 179 ASLKGLEPGYPGGPLLNPLGLAKDINNAHDWKLKEIKNGRLAMV 222
>gi|124388816|gb|ABN10530.1| Lhca5 protein [Gentiana lutea]
Length = 272
Score = 324 bits (830), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 163/217 (75%), Positives = 182/217 (83%), Gaps = 11/217 (5%)
Query: 16 SSSFICNDVNK----SSIGITSAFLPAKS----GTTRRYLATVVRAQQRPTWLPGVDPPP 67
SSS N++N S +TS LPAKS + R L TVVRAQQRPTWLPG+DPPP
Sbjct: 18 SSSIFTNNINTYQTLSLNKVTS--LPAKSRGIFHSHGRRLCTVVRAQQRPTWLPGLDPPP 75
Query: 68 YLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELP 127
YLDGTLAGDFGFDPLGLGEDPESL+WYVQAELVH+RFAMAGVAGILFTDLLR TG+ LP
Sbjct: 76 YLDGTLAGDFGFDPLGLGEDPESLKWYVQAELVHSRFAMAGVAGILFTDLLRTTGLSNLP 135
Query: 128 VWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLE 187
VWYEAGA +F+FA+T TLFIVQ+LLMGF ETKRYMD+ +PGSQ E SFFGLEAALEGLE
Sbjct: 136 VWYEAGATKFQFANTTTLFIVQMLLMGFVETKRYMDFKNPGSQ-GEASFFGLEAALEGLE 194
Query: 188 PGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
PGYPGGP+LNPLG+AKDI+NA EWKLKEIKNG + +V
Sbjct: 195 PGYPGGPILNPLGIAKDIKNAPEWKLKEIKNGRLAMV 231
>gi|388518909|gb|AFK47516.1| unknown [Lotus japonicus]
Length = 266
Score = 313 bits (801), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 160/227 (70%), Positives = 181/227 (79%), Gaps = 5/227 (2%)
Query: 1 MAVAVGRGFLLQPSSSSSFICNDV-NKSSIGITSAFLPA--KSGTTRRYLATVVRAQQRP 57
MA A+ R + QP S F N + N S G S PA ++GTT R Q RP
Sbjct: 1 MAAAIARSYSFQPRSL--FNSNTIYNPSPYGGYSWLGPAASRAGTTPRCRQICAAMQPRP 58
Query: 58 TWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDL 117
TWLPG+DPP YLDGTLAGD+GFDPLGLGEDPESLRWYVQAELVHARFAM GV GIL TDL
Sbjct: 59 TWLPGLDPPAYLDGTLAGDYGFDPLGLGEDPESLRWYVQAELVHARFAMLGVFGILVTDL 118
Query: 118 LRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFF 177
LRVTG+ ++PVW+EAGAV+++F +T+TL IVQLLLMGFAETKRYMD+I PGSQ KEGSFF
Sbjct: 119 LRVTGLSKIPVWFEAGAVKYEFTNTQTLIIVQLLLMGFAETKRYMDFIGPGSQAKEGSFF 178
Query: 178 GLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
GLEA+ EGLEPGYPGGPLLNPLGLAKDI+NARE KLKEIKNG + +V
Sbjct: 179 GLEASFEGLEPGYPGGPLLNPLGLAKDIKNARESKLKEIKNGRLAMV 225
>gi|449466336|ref|XP_004150882.1| PREDICTED: chlorophyll a-b binding protein 4, chloroplastic-like
[Cucumis sativus]
gi|449522610|ref|XP_004168319.1| PREDICTED: chlorophyll a-b binding protein 4, chloroplastic-like
[Cucumis sativus]
Length = 259
Score = 308 bits (788), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 149/214 (69%), Positives = 173/214 (80%), Gaps = 8/214 (3%)
Query: 11 LQPSSSSSFICNDVNKSSIGITSAFLPAKSGTTRRYLATVVRAQQRPTWLPGVDPPPYLD 70
L PSSSS + + S FL +S + R L +++ R TWLPG+DPPP+LD
Sbjct: 13 LHPSSSS--------YTPLFNPSQFLRLRSPSRRTLLIAHAQSEHRQTWLPGLDPPPHLD 64
Query: 71 GTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWY 130
GTLAGDFGFDPLGLGEDP+SL+WYVQAELVH RFAM GV+G+L TDLLRVTGI ELPVWY
Sbjct: 65 GTLAGDFGFDPLGLGEDPQSLKWYVQAELVHCRFAMLGVSGVLLTDLLRVTGISELPVWY 124
Query: 131 EAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGY 190
AGAVE+ FA+ RTLFIVQLLLMGF ETKRYMD+ SPGSQ +EG+FFGLEAA +GLEPGY
Sbjct: 125 NAGAVEYGFANKRTLFIVQLLLMGFVETKRYMDFKSPGSQAQEGTFFGLEAAFKGLEPGY 184
Query: 191 PGGPLLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
PGGPLLNPLG+AKDI+NA +WKLKEIKNG + +V
Sbjct: 185 PGGPLLNPLGIAKDIKNAHDWKLKEIKNGRLAMV 218
>gi|297846882|ref|XP_002891322.1| light-harvesting complex protein [Arabidopsis lyrata subsp. lyrata]
gi|297337164|gb|EFH67581.1| light-harvesting complex protein [Arabidopsis lyrata subsp. lyrata]
Length = 256
Score = 307 bits (786), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 155/210 (73%), Positives = 172/210 (81%), Gaps = 17/210 (8%)
Query: 30 GITSAFLPAKSGT----TRRYLATVVRAQ----------QRPTWLPGVDPPPYLDGTLAG 75
GIT FL + T TRR + VRA +R TWLPG+DPPPYLDG LAG
Sbjct: 8 GITGGFLHQRRDTSSVITRRI--SSVRAAGGGINPTVAVERATWLPGLDPPPYLDGKLAG 65
Query: 76 DFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAV 135
D+GFDPLGLGEDPESLRWYVQAELVH+RFAM GVAGILFTDLLR TGIR LPVWYEAGAV
Sbjct: 66 DYGFDPLGLGEDPESLRWYVQAELVHSRFAMLGVAGILFTDLLRTTGIRNLPVWYEAGAV 125
Query: 136 EFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGS-FFGLEAALEGLEPGYPGGP 194
+F FAST+TL +VQ LLMGFAETKRY+DY+SPGSQ KEGS FFG+EAALEGLEPGYPGGP
Sbjct: 126 KFDFASTKTLIVVQFLLMGFAETKRYVDYVSPGSQAKEGSFFFGIEAALEGLEPGYPGGP 185
Query: 195 LLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
LLNPLGLAKDI+NA +WKLKEIKNG + ++
Sbjct: 186 LLNPLGLAKDIKNAHDWKLKEIKNGRLAMM 215
>gi|357465507|ref|XP_003603038.1| Chlorophyll a-b binding protein [Medicago truncatula]
gi|355492086|gb|AES73289.1| Chlorophyll a-b binding protein [Medicago truncatula]
Length = 267
Score = 306 bits (785), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 151/223 (67%), Positives = 175/223 (78%), Gaps = 4/223 (1%)
Query: 4 AVGRGFLLQPSSSSSFICNDVNKSSIGITSAFLPAKSGT--TRRYLATVVRAQQRPTWLP 61
A+ R F Q S N + K S PA +GT T R AQQRPTWLP
Sbjct: 6 AIARSFHFQ--QHSLINSNVIGKPSTAGHHWLRPAAAGTGVTPRCKQICAAAQQRPTWLP 63
Query: 62 GVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVT 121
G+DPP YLDGTL GDFGFDPLGLGEDPESL+WYVQAELVH+RFAM GV GIL TDLLRV
Sbjct: 64 GLDPPTYLDGTLPGDFGFDPLGLGEDPESLKWYVQAELVHSRFAMLGVLGILVTDLLRVA 123
Query: 122 GIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEA 181
G+ +P+W+EAGAV+++FA+T TL +VQLLLMG+AET+RYMD++SPGSQ KEGSFFGLEA
Sbjct: 124 GVNSIPIWFEAGAVKYEFANTGTLVVVQLLLMGYAETRRYMDFVSPGSQAKEGSFFGLEA 183
Query: 182 ALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
+L GLEPGYPGGPLLNPLGLAKDI++AREWKLKEIKNG + +V
Sbjct: 184 SLGGLEPGYPGGPLLNPLGLAKDIKSAREWKLKEIKNGRLAMV 226
>gi|21593722|gb|AAM65689.1| light-harvesting complex protein [Arabidopsis thaliana]
Length = 256
Score = 304 bits (779), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 151/208 (72%), Positives = 170/208 (81%), Gaps = 13/208 (6%)
Query: 30 GITSAFL----PAKSGTTRRYLATVVR--------AQQRPTWLPGVDPPPYLDGTLAGDF 77
GIT FL A S TRR + A +R TWLPG++PPPYLDG LAGD+
Sbjct: 8 GITGGFLHHRRDASSVITRRISSVKAAGGGINPTVAVERATWLPGLNPPPYLDGNLAGDY 67
Query: 78 GFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEF 137
GFDPLGLGEDPESL+WYVQAELVH+RFAM GVAGILFTDLLR TGIR LPVWYEAGAV+F
Sbjct: 68 GFDPLGLGEDPESLKWYVQAELVHSRFAMLGVAGILFTDLLRTTGIRNLPVWYEAGAVKF 127
Query: 138 KFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGS-FFGLEAALEGLEPGYPGGPLL 196
FAST+TL +VQ LLMGFAETKRYMD++SPGSQ KEGS FFG+EAALEGLEPGYPGGPLL
Sbjct: 128 DFASTKTLIVVQFLLMGFAETKRYMDFVSPGSQAKEGSFFFGIEAALEGLEPGYPGGPLL 187
Query: 197 NPLGLAKDIRNAREWKLKEIKNGLICLV 224
NPLGLAKD++NA +WKLKEIKNG + ++
Sbjct: 188 NPLGLAKDVKNAHDWKLKEIKNGRLAMM 215
>gi|15220077|ref|NP_175137.1| photosystem I light harvesting complex protein 5 [Arabidopsis
thaliana]
gi|30693978|ref|NP_849778.1| photosystem I light harvesting complex protein 5 [Arabidopsis
thaliana]
gi|12321000|gb|AAG50618.1|AC083835_3 light-harvesting complex protein [Arabidopsis thaliana]
gi|17063199|gb|AAL32974.1| At1g45474/F2G19.4 [Arabidopsis thaliana]
gi|19699116|gb|AAL90924.1| At1g45474/F2G19.4 [Arabidopsis thaliana]
gi|62320735|dbj|BAD95402.1| light-harvesting complex protein [Arabidopsis thaliana]
gi|332193996|gb|AEE32117.1| photosystem I light harvesting complex protein 5 [Arabidopsis
thaliana]
gi|332193997|gb|AEE32118.1| photosystem I light harvesting complex protein 5 [Arabidopsis
thaliana]
Length = 256
Score = 304 bits (779), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 152/208 (73%), Positives = 170/208 (81%), Gaps = 13/208 (6%)
Query: 30 GITSAFL----PAKSGTTRRYLATVVR--------AQQRPTWLPGVDPPPYLDGTLAGDF 77
GIT FL A S TRR + A +R TWLPG++PPPYLDG LAGD+
Sbjct: 8 GITGGFLHHRRDASSVITRRISSVKAAGGGINPTVAVERATWLPGLNPPPYLDGNLAGDY 67
Query: 78 GFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEF 137
GFDPLGLGEDPESL+WYVQAELVH+RFAM GVAGILFTDLLR TGIR LPVWYEAGAV+F
Sbjct: 68 GFDPLGLGEDPESLKWYVQAELVHSRFAMLGVAGILFTDLLRTTGIRNLPVWYEAGAVKF 127
Query: 138 KFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGS-FFGLEAALEGLEPGYPGGPLL 196
FAST+TL +VQ LLMGFAETKRYMD++SPGSQ KEGS FFGLEAALEGLEPGYPGGPLL
Sbjct: 128 DFASTKTLIVVQFLLMGFAETKRYMDFVSPGSQAKEGSFFFGLEAALEGLEPGYPGGPLL 187
Query: 197 NPLGLAKDIRNAREWKLKEIKNGLICLV 224
NPLGLAKD++NA +WKLKEIKNG + ++
Sbjct: 188 NPLGLAKDVQNAHDWKLKEIKNGRLAMM 215
>gi|222423311|dbj|BAH19631.1| AT1G45474 [Arabidopsis thaliana]
Length = 248
Score = 303 bits (777), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 142/173 (82%), Positives = 159/173 (91%), Gaps = 1/173 (0%)
Query: 53 AQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGI 112
A +R TWLPG++PPPYLDG LAGD+GFDPLGLGEDPESL+WYVQAELVH+RFAM GVAGI
Sbjct: 35 AVERATWLPGLNPPPYLDGNLAGDYGFDPLGLGEDPESLKWYVQAELVHSRFAMLGVAGI 94
Query: 113 LFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTK 172
LFTDLLR TGIR LPVWYEAGAV+F FAST+TL +VQ LLMGFAETKRYMD++SPGSQ K
Sbjct: 95 LFTDLLRTTGIRNLPVWYEAGAVKFDFASTKTLIVVQFLLMGFAETKRYMDFVSPGSQAK 154
Query: 173 EGS-FFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
EGS FFGLEAALEGLEPGYPGGPLLNPLGLAKD++NA +WKLKEIKNG + ++
Sbjct: 155 EGSFFFGLEAALEGLEPGYPGGPLLNPLGLAKDVQNAHDWKLKEIKNGRLAMM 207
>gi|4741942|gb|AAD28768.1|AF134121_1 Lhca5 protein [Arabidopsis thaliana]
Length = 256
Score = 302 bits (773), Expect = 7e-80, Method: Compositional matrix adjust.
Identities = 151/208 (72%), Positives = 169/208 (81%), Gaps = 13/208 (6%)
Query: 30 GITSAFL----PAKSGTTRRYLATVVR--------AQQRPTWLPGVDPPPYLDGTLAGDF 77
GIT FL A S TRR + A +R TWLPG++PPPYLDG LAGD+
Sbjct: 8 GITGGFLHHRRDASSVITRRISSVKAAGGGINPTVAVERATWLPGLNPPPYLDGNLAGDY 67
Query: 78 GFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEF 137
GFDPLGLGEDPESL+WYVQAELVH+RFAM GVAGILFTDLLR TGIR LPVWYEAGAV+F
Sbjct: 68 GFDPLGLGEDPESLKWYVQAELVHSRFAMLGVAGILFTDLLRTTGIRNLPVWYEAGAVKF 127
Query: 138 KFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGS-FFGLEAALEGLEPGYPGGPLL 196
FA T+TL +VQ LLMGFAETKRYMD++SPGSQ KEGS FFGLEAALEGLEPGYPGGPLL
Sbjct: 128 DFACTKTLIVVQFLLMGFAETKRYMDFVSPGSQAKEGSFFFGLEAALEGLEPGYPGGPLL 187
Query: 197 NPLGLAKDIRNAREWKLKEIKNGLICLV 224
NPLGLAKD++NA +WKLKEIKNG + ++
Sbjct: 188 NPLGLAKDVQNAHDWKLKEIKNGRLAMM 215
>gi|388510254|gb|AFK43193.1| unknown [Lotus japonicus]
Length = 213
Score = 300 bits (768), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 142/171 (83%), Positives = 158/171 (92%)
Query: 54 QQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGIL 113
Q RPTWLPG+DPP YLDGTLAGD+GFDPLGLGEDPESLRWYVQAELVHARFAM GV GIL
Sbjct: 2 QPRPTWLPGLDPPAYLDGTLAGDYGFDPLGLGEDPESLRWYVQAELVHARFAMLGVFGIL 61
Query: 114 FTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKE 173
TDLLRVTG+ ++PVW+EAGAV+++F +T+TL IVQLLLMGFAETKRYMD+ISPGSQ KE
Sbjct: 62 VTDLLRVTGLSKIPVWFEAGAVKYEFTNTQTLIIVQLLLMGFAETKRYMDFISPGSQAKE 121
Query: 174 GSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
GSFFGLEA+ EGLEPGYPGGPLLNPLGLAKDI+NARE KLKEIKNG + +V
Sbjct: 122 GSFFGLEASFEGLEPGYPGGPLLNPLGLAKDIKNARESKLKEIKNGRLAMV 172
>gi|242066618|ref|XP_002454598.1| hypothetical protein SORBIDRAFT_04g034130 [Sorghum bicolor]
gi|241934429|gb|EES07574.1| hypothetical protein SORBIDRAFT_04g034130 [Sorghum bicolor]
Length = 266
Score = 287 bits (735), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 134/170 (78%), Positives = 150/170 (88%)
Query: 55 QRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILF 114
QRPTWLPG+DPPP+LDGTL GDFGFDPLGLGEDP SL+WYVQAELVH RFAMAGVAGILF
Sbjct: 58 QRPTWLPGLDPPPHLDGTLPGDFGFDPLGLGEDPASLKWYVQAELVHCRFAMAGVAGILF 117
Query: 115 TDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEG 174
TDLLRV+G +LPVW+EAGA +F+FA+T LF VQLLLMGFAETKRYMD+ +PGSQ +EG
Sbjct: 118 TDLLRVSGNSDLPVWFEAGAAKFEFANTTALFFVQLLLMGFAETKRYMDFKNPGSQAEEG 177
Query: 175 SFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
+F GLEAAL G +PGYPGGPL NPLGLAKDI NA E KLKEIKNG + +V
Sbjct: 178 TFIGLEAALAGQQPGYPGGPLFNPLGLAKDIENAHEEKLKEIKNGRLAMV 227
>gi|194704284|gb|ACF86226.1| unknown [Zea mays]
Length = 269
Score = 281 bits (720), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 131/170 (77%), Positives = 148/170 (87%)
Query: 55 QRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILF 114
QR TWLPG+DPPPYLDGTL GDFGFDPLGLGE+PE+L+WYVQAELVH RFAMAGVAGILF
Sbjct: 61 QRATWLPGLDPPPYLDGTLPGDFGFDPLGLGEEPEALKWYVQAELVHCRFAMAGVAGILF 120
Query: 115 TDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEG 174
TDLLRV+G +LPVW+EAGA +F FA+T LF VQL LMGFAETKRYMD+ +PGSQ +EG
Sbjct: 121 TDLLRVSGNSDLPVWFEAGAAKFDFANTTALFFVQLFLMGFAETKRYMDFKNPGSQAEEG 180
Query: 175 SFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
+F GLEAAL G +PGYPGGPL NPLGLAKDI NA + KLKEIKNG + +V
Sbjct: 181 TFIGLEAALAGQQPGYPGGPLFNPLGLAKDIENAHDEKLKEIKNGRLAMV 230
>gi|413939030|gb|AFW73581.1| chlorophyll a-b binding protein 4 [Zea mays]
Length = 315
Score = 281 bits (720), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 131/170 (77%), Positives = 148/170 (87%)
Query: 55 QRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILF 114
QR TWLPG+DPPPYLDGTL GDFGFDPLGLGE+PE+L+WYVQAELVH RFAMAGVAGILF
Sbjct: 107 QRATWLPGLDPPPYLDGTLPGDFGFDPLGLGEEPEALKWYVQAELVHCRFAMAGVAGILF 166
Query: 115 TDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEG 174
TDLLRV+G +LPVW+EAGA +F FA+T LF VQL LMGFAETKRYMD+ +PGSQ +EG
Sbjct: 167 TDLLRVSGNSDLPVWFEAGAAKFDFANTTALFFVQLFLMGFAETKRYMDFKNPGSQAEEG 226
Query: 175 SFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
+F GLEAAL G +PGYPGGPL NPLGLAKDI NA + KLKEIKNG + +V
Sbjct: 227 TFIGLEAALAGQQPGYPGGPLFNPLGLAKDIENAHDEKLKEIKNGRLAMV 276
>gi|226498858|ref|NP_001148187.1| LOC100281795 [Zea mays]
gi|195616580|gb|ACG30120.1| chlorophyll a-b binding protein 4 [Zea mays]
Length = 269
Score = 281 bits (719), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 131/170 (77%), Positives = 148/170 (87%)
Query: 55 QRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILF 114
QR TWLPG+DPPPYLDGTL GDFGFDPLGLGE+PE+L+WYVQAELVH RFAMAGVAGILF
Sbjct: 61 QRATWLPGLDPPPYLDGTLPGDFGFDPLGLGEEPEALKWYVQAELVHCRFAMAGVAGILF 120
Query: 115 TDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEG 174
TDLLRV+G +LPVW+EAGA +F FA+T LF VQL LMGFAETKRYMD+ +PGSQ +EG
Sbjct: 121 TDLLRVSGNSDLPVWFEAGAAKFDFANTTALFFVQLFLMGFAETKRYMDFKNPGSQAEEG 180
Query: 175 SFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
+F GLEAAL G +PGYPGGPL NPLGLAKDI NA + KLKEIKNG + +V
Sbjct: 181 TFIGLEAALAGQQPGYPGGPLFNPLGLAKDIENAHDEKLKEIKNGRLAMV 230
>gi|326496799|dbj|BAJ98426.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326509469|dbj|BAJ91651.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326509647|dbj|BAJ87039.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 257
Score = 280 bits (717), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 132/193 (68%), Positives = 154/193 (79%)
Query: 32 TSAFLPAKSGTTRRYLATVVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESL 91
++ +P + R V +R TWLPG+DPP YLDGTL GD+GFDPLGLGE PE L
Sbjct: 26 STVAMPGHHAESPRARFAVRAIAERATWLPGLDPPAYLDGTLPGDYGFDPLGLGEQPEDL 85
Query: 92 RWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLL 151
+WYVQAELVH RFAMAGVAGIL TDL+RV+GI LPVW+EAGA +F FA+T LF VQLL
Sbjct: 86 KWYVQAELVHCRFAMAGVAGILGTDLIRVSGIGNLPVWFEAGATKFDFANTTALFFVQLL 145
Query: 152 LMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREW 211
LMGF ETKRYMD++SPGSQ KEG+F G+EA+LEGL+PGYPGGPL NP+GLAKDI NA E
Sbjct: 146 LMGFVETKRYMDFVSPGSQAKEGTFLGIEASLEGLQPGYPGGPLFNPMGLAKDIENANEV 205
Query: 212 KLKEIKNGLICLV 224
KLKEIKNG + +V
Sbjct: 206 KLKEIKNGRLAMV 218
>gi|115448873|ref|NP_001048216.1| Os02g0764500 [Oryza sativa Japonica Group]
gi|46805727|dbj|BAD17114.1| putative light-harvesting chlorophyll-a/b protein of photosystem I
[Oryza sativa Japonica Group]
gi|113537747|dbj|BAF10130.1| Os02g0764500 [Oryza sativa Japonica Group]
gi|215694704|dbj|BAG89895.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222623725|gb|EEE57857.1| hypothetical protein OsJ_08493 [Oryza sativa Japonica Group]
Length = 261
Score = 280 bits (716), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 132/175 (75%), Positives = 151/175 (86%), Gaps = 1/175 (0%)
Query: 51 VRAQ-QRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGV 109
VRA +R TWLPG+DPPP+LDGTL GDFGFDPLGLGE+P +L+WYVQAELVH RFAMAGV
Sbjct: 48 VRASTERATWLPGLDPPPHLDGTLPGDFGFDPLGLGEEPANLKWYVQAELVHCRFAMAGV 107
Query: 110 AGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGS 169
AGIL TDL+RV+GI LPVW+EAGA +F FA+T LF VQLLLMGFAETKRYMD+I+PGS
Sbjct: 108 AGILATDLIRVSGINNLPVWFEAGATKFDFANTTALFFVQLLLMGFAETKRYMDFINPGS 167
Query: 170 QTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
Q +EG+F G+EAAL G +PGYPGGPL NPLGLAKDI NA E KLKEIKNG + +V
Sbjct: 168 QAEEGTFLGIEAALAGSQPGYPGGPLFNPLGLAKDIENADEAKLKEIKNGRLAMV 222
>gi|218191630|gb|EEC74057.1| hypothetical protein OsI_09055 [Oryza sativa Indica Group]
Length = 261
Score = 278 bits (712), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 131/175 (74%), Positives = 150/175 (85%), Gaps = 1/175 (0%)
Query: 51 VRAQ-QRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGV 109
VRA +R TWLPG+DPPP+LDGTL GDFGFDPLGLGE+P +L+WYVQAELVH RFAMAGV
Sbjct: 48 VRASTERATWLPGLDPPPHLDGTLPGDFGFDPLGLGEEPANLKWYVQAELVHCRFAMAGV 107
Query: 110 AGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGS 169
AGIL TD +RV+GI LPVW+EAGA +F FA+T LF VQLLLMGFAETKRYMD+I+PGS
Sbjct: 108 AGILATDFIRVSGINNLPVWFEAGATKFDFANTTALFFVQLLLMGFAETKRYMDFINPGS 167
Query: 170 QTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
Q +EG+F G+EAAL G +PGYPGGPL NPLGLAKDI NA E KLKEIKNG + +V
Sbjct: 168 QAEEGTFLGIEAALAGSQPGYPGGPLFNPLGLAKDIENADEAKLKEIKNGRLAMV 222
>gi|357137970|ref|XP_003570571.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
[Brachypodium distachyon]
Length = 259
Score = 277 bits (709), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 127/170 (74%), Positives = 148/170 (87%)
Query: 55 QRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILF 114
+R TWLPG+DPPPYLDGTL GD+GFDPLGLGE+P L+WYVQAELVH RFAMAGVAGIL
Sbjct: 51 ERATWLPGLDPPPYLDGTLPGDYGFDPLGLGEEPADLKWYVQAELVHCRFAMAGVAGILG 110
Query: 115 TDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEG 174
TDL+RV+GI LPVW+EAGA +F FA+T LF VQLLLMGF ETKRYMD ++PGSQ +EG
Sbjct: 111 TDLIRVSGISNLPVWFEAGATKFDFANTTALFFVQLLLMGFVETKRYMDIVNPGSQAEEG 170
Query: 175 SFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
+F G+EA+LEGL+PGYPGGPL NP+GLAKDI+NA E KLKEIKNG + +V
Sbjct: 171 TFLGIEASLEGLQPGYPGGPLFNPMGLAKDIKNAHEVKLKEIKNGRLAMV 220
>gi|302756045|ref|XP_002961446.1| light-harvesting complex [Selaginella moellendorffii]
gi|302776390|ref|XP_002971365.1| light-harvesting complex [Selaginella moellendorffii]
gi|300161347|gb|EFJ27963.1| light-harvesting complex [Selaginella moellendorffii]
gi|300170105|gb|EFJ36706.1| light-harvesting complex [Selaginella moellendorffii]
Length = 250
Score = 261 bits (666), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 125/198 (63%), Positives = 154/198 (77%), Gaps = 7/198 (3%)
Query: 32 TSAFLPAKSGTTRRYLATVVRAQ-----QRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGE 86
+S + ++ R+L+ +RAQ +RP WLPG+ PP +LDG+LAGDFGFDPL LG+
Sbjct: 16 SSCYPRIRNAHCARFLS--IRAQSSGSDERPIWLPGLSPPQHLDGSLAGDFGFDPLELGK 73
Query: 87 DPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLF 146
DPE+LRWYVQAELVH+RFAMAG+AGIL TDLLR G R+LPVWYEAGA EF+FA TRTLF
Sbjct: 74 DPETLRWYVQAELVHSRFAMAGIAGILVTDLLRTVGGRDLPVWYEAGATEFEFADTRTLF 133
Query: 147 IVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIR 206
+VQL+LMG+AET+RY DYISPGSQ + +F G E AL GL+ GYPGGP +P GL +DI
Sbjct: 134 VVQLILMGYAETRRYYDYISPGSQAAQDTFLGFEDALAGLQSGYPGGPFFDPAGLGRDIN 193
Query: 207 NAREWKLKEIKNGLICLV 224
NAR K KE+KNG + +V
Sbjct: 194 NARTLKEKELKNGRLAMV 211
>gi|168057356|ref|XP_001780681.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162667846|gb|EDQ54465.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 208
Score = 255 bits (651), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 119/170 (70%), Positives = 137/170 (80%)
Query: 55 QRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILF 114
+RP WLPG PP +LDGTLAGDFGFDPLGLG+DP+ LRWYVQAELVH+RFAMAGVAGILF
Sbjct: 1 ERPLWLPGTTPPAHLDGTLAGDFGFDPLGLGQDPQDLRWYVQAELVHSRFAMAGVAGILF 60
Query: 115 TDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEG 174
TDLLR +G ++PVW+EAGA +F FA T TLF+VQL+LMGF ETKR+MD + PGSQ E
Sbjct: 61 TDLLRASGRTDIPVWFEAGATKFDFADTTTLFVVQLILMGFVETKRWMDIVKPGSQAAED 120
Query: 175 SFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
SFFG EAA EGLE GYPGGPL NPLG A D + + KEIKNG + +V
Sbjct: 121 SFFGFEAAFEGLETGYPGGPLFNPLGFANDPTKPQPLRWKEIKNGRLAMV 170
>gi|302851787|ref|XP_002957416.1| light-harvesting protein of photosystem I [Volvox carteri f.
nagariensis]
gi|300257220|gb|EFJ41471.1| light-harvesting protein of photosystem I [Volvox carteri f.
nagariensis]
Length = 241
Score = 185 bits (470), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 98/193 (50%), Positives = 128/193 (66%), Gaps = 6/193 (3%)
Query: 38 AKSGTTRRYLATV-VRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQ 96
A G R+ +V V+A RP W PG PP +LDG+LAGD+GFDPL LG++P++L+WYVQ
Sbjct: 11 AAFGVARQTPRSVRVKAATRPVWFPGNPPPAHLDGSLAGDYGFDPLFLGQEPQTLKWYVQ 70
Query: 97 AELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAG--AVEFKFASTRTLFIVQLLLMG 154
AELVH RFAM G AGI+ T + G+ P WY+AG VE TL I QL LMG
Sbjct: 71 AELVHGRFAMLGAAGIILTSIGAKVGL-GFPEWYDAGKVVVEKNNIDFPTLLITQLYLMG 129
Query: 155 FAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAK-DIRNAREWKL 213
+AETKR+ D+ +PGSQ +GSF G +GLE GYPGG +P+GL++ D +E+K
Sbjct: 130 WAETKRWYDFKNPGSQG-DGSFLGFTDEFKGLENGYPGGRFFDPMGLSRGDADKYKEYKQ 188
Query: 214 KEIKNGLICLVLC 226
KEIKNG + ++ C
Sbjct: 189 KEIKNGRLAMIAC 201
>gi|413939029|gb|AFW73580.1| hypothetical protein ZEAMMB73_964613 [Zea mays]
Length = 158
Score = 184 bits (468), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 87/119 (73%), Positives = 100/119 (84%)
Query: 106 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 165
MAGVAGILFTDLLRV+G +LPVW+EAGA +F FA+T LF VQL LMGFAETKRYMD+
Sbjct: 1 MAGVAGILFTDLLRVSGNSDLPVWFEAGAAKFDFANTTALFFVQLFLMGFAETKRYMDFK 60
Query: 166 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
+PGSQ +EG+F GLEAAL G +PGYPGGPL NPLGLAKDI NA + KLKEIKNG + +V
Sbjct: 61 NPGSQAEEGTFIGLEAALAGQQPGYPGGPLFNPLGLAKDIENAHDEKLKEIKNGRLAMV 119
>gi|159476206|ref|XP_001696202.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
gi|40714515|dbj|BAD06921.1| light-harvesting chlorophyll-a/b protein of photosystem I
[Chlamydomonas reinhardtii]
gi|158282427|gb|EDP08179.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
Length = 243
Score = 184 bits (468), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 101/194 (52%), Positives = 128/194 (65%), Gaps = 11/194 (5%)
Query: 38 AKSGTTRRYLATVVRAQQRPTWLPGVDPPPYLDG----TLAGDFGFDPLGLGEDPESLRW 93
A+S ++R+ + T V R +WLPG P +LD LAG+FGFDPLGLG+DP +LRW
Sbjct: 12 ARSASSRKSVVTCV---ARQSWLPGSQIPAHLDTPAAQALAGNFGFDPLGLGKDPVALRW 68
Query: 94 YVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAG--AVEFKFASTRTLFIVQLL 151
Y QAEL+H R AMAGVAGIL LL G +P WY+AG A+E FA +L VQL
Sbjct: 69 YQQAELIHCRTAMAGVAGILIPGLLTKAGALNVPEWYDAGKVAIENSFAPWGSLLAVQLF 128
Query: 152 LMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGL-EPGYPGGPLLNPLGLAKDIRNARE 210
L GF E KR+ D PGSQ + GSF G EA+L+G E GYPGGP +PLGL+K+ +
Sbjct: 129 LCGFVEAKRWQDIRKPGSQGEPGSFLGFEASLKGTSELGYPGGP-FDPLGLSKEADKWAD 187
Query: 211 WKLKEIKNGLICLV 224
WKLKE+KNG + ++
Sbjct: 188 WKLKEVKNGRLAML 201
>gi|40714521|dbj|BAD06924.1| light-harvesting chlorophyll-a/b protein of photosystem I
[Chlamydomonas reinhardtii]
Length = 241
Score = 184 bits (466), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 94/189 (49%), Positives = 125/189 (66%), Gaps = 7/189 (3%)
Query: 43 TRRYLATVVRAQQ--RPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELV 100
+ R VRAQ RP W PG PP +LDG+LAGD+GFDPL LG++P++L+WYVQAELV
Sbjct: 15 SARQAPRAVRAQAAVRPVWFPGNPPPAHLDGSLAGDYGFDPLFLGQEPQTLKWYVQAELV 74
Query: 101 HARFAMAGVAGILFTDLLRVTGIRELPVWYEAG--AVEFKFASTRTLFIVQLLLMGFAET 158
H RFAM G AGI+ T + G+ P WY+AG VE TL ++Q LMG+AET
Sbjct: 75 HGRFAMLGAAGIILTSIGAKVGL-GFPEWYDAGKVVVEKNNIDFPTLMVIQFYLMGWAET 133
Query: 159 KRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAK-DIRNAREWKLKEIK 217
KR+ D+ +PGSQ +GSF G +GLE GYPGG +P+GL++ D +E+K KE+K
Sbjct: 134 KRWYDFKNPGSQA-DGSFLGFTEEFKGLENGYPGGRFFDPMGLSRGDAAKYQEYKQKEVK 192
Query: 218 NGLICLVLC 226
NG + ++ C
Sbjct: 193 NGRLAMIAC 201
>gi|159467559|ref|XP_001691959.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
gi|158278686|gb|EDP04449.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
Length = 288
Score = 183 bits (465), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 94/189 (49%), Positives = 125/189 (66%), Gaps = 7/189 (3%)
Query: 43 TRRYLATVVRAQQ--RPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELV 100
+ R VRAQ RP W PG PP +LDG+LAGD+GFDPL LG++P++L+WYVQAELV
Sbjct: 15 SARQAPRAVRAQAAVRPVWFPGNPPPAHLDGSLAGDYGFDPLFLGQEPQTLKWYVQAELV 74
Query: 101 HARFAMAGVAGILFTDLLRVTGIRELPVWYEAG--AVEFKFASTRTLFIVQLLLMGFAET 158
H RFAM G AGI+ T + G+ P WY+AG VE TL ++Q LMG+AET
Sbjct: 75 HGRFAMLGAAGIILTSIGAKVGL-GFPEWYDAGKVVVEKNNIDFPTLMVIQFYLMGWAET 133
Query: 159 KRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAK-DIRNAREWKLKEIK 217
KR+ D+ +PGSQ +GSF G +GLE GYPGG +P+GL++ D +E+K KE+K
Sbjct: 134 KRWYDFKNPGSQA-DGSFLGFTEEFKGLENGYPGGRFFDPMGLSRGDAAKYQEYKQKEVK 192
Query: 218 NGLICLVLC 226
NG + ++ C
Sbjct: 193 NGRLAMIAC 201
>gi|27542569|gb|AAO16495.1| light-harvesting complex I protein [Chlamydomonas reinhardtii]
Length = 241
Score = 183 bits (465), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 94/189 (49%), Positives = 125/189 (66%), Gaps = 7/189 (3%)
Query: 43 TRRYLATVVRAQQ--RPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELV 100
+ R VRAQ RP W PG PP +LDG+LAGD+GFDPL LG++P++L+WYVQAELV
Sbjct: 15 SARQAPRAVRAQAAVRPVWFPGNPPPAHLDGSLAGDYGFDPLFLGQEPQTLKWYVQAELV 74
Query: 101 HARFAMAGVAGILFTDLLRVTGIRELPVWYEAG--AVEFKFASTRTLFIVQLLLMGFAET 158
H RFAM G AGI+ T + G+ P WY+AG VE TL ++Q LMG+AET
Sbjct: 75 HGRFAMLGAAGIILTSIGAKVGL-GFPEWYDAGKVVVEKNNIDFPTLMVIQFYLMGWAET 133
Query: 159 KRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAK-DIRNAREWKLKEIK 217
KR+ D+ +PGSQ +GSF G +GLE GYPGG +P+GL++ D +E+K KE+K
Sbjct: 134 KRWYDFKNPGSQA-DGSFLGFTEEFKGLENGYPGGRFFDPMGLSRGDAAKYQEYKQKEVK 192
Query: 218 NGLICLVLC 226
NG + ++ C
Sbjct: 193 NGRLAMIAC 201
>gi|302828616|ref|XP_002945875.1| light harvesting complex a protein [Volvox carteri f. nagariensis]
gi|5902596|gb|AAD55568.1|AF110786_1 light harvesting complex a protein [Volvox carteri f. nagariensis]
gi|300268690|gb|EFJ52870.1| light harvesting complex a protein [Volvox carteri f. nagariensis]
Length = 243
Score = 183 bits (465), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 99/194 (51%), Positives = 124/194 (63%), Gaps = 11/194 (5%)
Query: 38 AKSGTTRRYLATVVRAQQRPTWLPGVDPPPYLDG----TLAGDFGFDPLGLGEDPESLRW 93
A+ +R+ + T V R +WLPG + P +LD +AG+FGFDPLGLG+D E+LRW
Sbjct: 12 ARPAVSRKAVVTCV---ARQSWLPGSEIPKHLDSPAALAMAGNFGFDPLGLGKDAEALRW 68
Query: 94 YVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAG--AVEFKFASTRTLFIVQLL 151
Y QAELVHAR AM VAGIL LL G +P WY+AG A+E FA L VQL
Sbjct: 69 YQQAELVHARTAMTAVAGILIPGLLTKAGALNVPEWYDAGKVAIESSFAPFGALLAVQLF 128
Query: 152 LMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGL-EPGYPGGPLLNPLGLAKDIRNARE 210
L GF E KR+ D+ PGSQ ++GSF G E A G + GYPGG + +PLGL+KD +
Sbjct: 129 LTGFVEAKRWQDFKKPGSQAEKGSFLGFETAFAGTGDNGYPGG-IFDPLGLSKDADKLAD 187
Query: 211 WKLKEIKNGLICLV 224
WKLKEIKNG + +V
Sbjct: 188 WKLKEIKNGRLAMV 201
>gi|87313219|gb|ABD37906.1| light-harvesting chlorophyll-a/b binding protein Lhca4
[Chlamydomonas incerta]
Length = 237
Score = 180 bits (457), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 99/194 (51%), Positives = 126/194 (64%), Gaps = 11/194 (5%)
Query: 38 AKSGTTRRYLATVVRAQQRPTWLPGVDPPPYLDG----TLAGDFGFDPLGLGEDPESLRW 93
A+S ++R+ + T V R +WLPG P +LD LAG+FGFDPLGLG+DP +L W
Sbjct: 6 ARSASSRKSVVTCV---ARQSWLPGSQIPAHLDTPSAQALAGNFGFDPLGLGKDPVALAW 62
Query: 94 YVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAG--AVEFKFASTRTLFIVQLL 151
Y QAEL+H R AM GVAGIL LL G +P WY+AG A+E FA TL VQL
Sbjct: 63 YQQAELIHCRTAMTGVAGILIPGLLTKAGALNVPEWYDAGKVAIENSFAPWGTLLAVQLF 122
Query: 152 LMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGL-EPGYPGGPLLNPLGLAKDIRNARE 210
L GF E KR+ D PGSQ + GSF G E++L+G E GYPGGP +PLGL+K+ +
Sbjct: 123 LCGFVEVKRWQDIRKPGSQGEPGSFLGFESSLKGTSEVGYPGGP-FDPLGLSKEADKWAD 181
Query: 211 WKLKEIKNGLICLV 224
WKLKE+KNG + ++
Sbjct: 182 WKLKEVKNGRLAML 195
>gi|74272669|gb|ABA01130.1| chloroplast light harvesting complex I protein [Chlamydomonas
incerta]
Length = 241
Score = 180 bits (456), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 95/189 (50%), Positives = 122/189 (64%), Gaps = 7/189 (3%)
Query: 43 TRRYLATVVRAQ--QRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELV 100
+ R VRAQ RP W PG P +LDGTLAGD+GFDPL LG++ E+LRWYVQAELV
Sbjct: 15 SARQAPRAVRAQALTRPVWFPGNPAPAHLDGTLAGDYGFDPLFLGQEKETLRWYVQAELV 74
Query: 101 HARFAMAGVAGILFTDLLRVTGIRELPVWYEAG--AVEFKFASTRTLFIVQLLLMGFAET 158
H RFAM G AGI+ T + G+ P WY+AG VE TL ++Q LMG+AET
Sbjct: 75 HGRFAMLGAAGIILTSIGAKVGL-GFPEWYDAGKVVVEKNNIDFPTLIVIQFYLMGWAET 133
Query: 159 KRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAK-DIRNAREWKLKEIK 217
KR+ D+ +PGSQ +GSF G +GLE GYPGG +P+GL++ D E+K KE+K
Sbjct: 134 KRWYDFKNPGSQA-DGSFLGFTEEFKGLENGYPGGRFFDPMGLSRGDAAKYAEYKQKEVK 192
Query: 218 NGLICLVLC 226
NG + ++ C
Sbjct: 193 NGRLAMIAC 201
>gi|255547714|ref|XP_002514914.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223545965|gb|EEF47468.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 270
Score = 177 bits (448), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 96/215 (44%), Positives = 129/215 (60%), Gaps = 15/215 (6%)
Query: 22 NDVNKSSIGITSA-FLPAKSGTTRRYLATVVRAQ----------QRPTWLPGVDPPPYLD 70
+ +N S++G T A FL K T R++ + VV ++ RP W PG PPP+LD
Sbjct: 20 SQINGSTVGATKASFLSGKRLTVRKHTSPVVASRSVTVCAVADPDRPLWFPGSTPPPWLD 79
Query: 71 GTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWY 130
G+L GDFGFDPLGLG DPE+LRW VQAELVH R+AM G AGI + L GI P WY
Sbjct: 80 GSLPGDFGFDPLGLGSDPETLRWNVQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWY 139
Query: 131 EAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGY 190
+AG +E+ F T TLFI++L+ +G+AE +R+ D + PG + F L G + GY
Sbjct: 140 DAGKLEY-FTDTTTLFIIELIFIGWAEGRRWADILKPGCVNTDPIF--PNNRLTGTDVGY 196
Query: 191 PGGPLLNPLGLAK-DIRNAREWKLKEIKNGLICLV 224
PGG +PLG +E + KEIKNG + ++
Sbjct: 197 PGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAML 231
>gi|551047|emb|CAA55864.1| type II LHCI [Lolium temulentum]
Length = 253
Score = 176 bits (445), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 94/196 (47%), Positives = 117/196 (59%), Gaps = 4/196 (2%)
Query: 30 GITSAFLPAKSGTTRRYLATVVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPE 89
G ++FL TR A +RP W PG PPP+LDG+L GDFGFDP GLG DPE
Sbjct: 22 GARTSFLGTGKAATRSSFTVRTAAPERPIWFPGSTPPPWLDGSLPGDFGFDPWGLGSDPE 81
Query: 90 SLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQ 149
SLRW VQAELVH R+AM G AGI +LL GI P WY AG E+ F T TLF+V+
Sbjct: 82 SLRWNVQAELVHCRWAMLGAAGIFIPELLTKIGILNTPSWYTAGEQEY-FTDTTTLFVVE 140
Query: 150 LLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAK-DIRNA 208
L+L+G+AE +R+ D I PGS + F L G + GYPGG +PLG
Sbjct: 141 LILIGWAEGRRWADIIKPGSVNTDPIF--PNNKLTGTDVGYPGGLWFDPLGYGNGSPEKL 198
Query: 209 REWKLKEIKNGLICLV 224
+E + KEIKNG + ++
Sbjct: 199 KELRTKEIKNGRLAML 214
>gi|20792|emb|CAA41406.1| Type II chlorophyll a /b-binding protein [Pinus sylvestris]
Length = 278
Score = 174 bits (442), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 98/230 (42%), Positives = 134/230 (58%), Gaps = 12/230 (5%)
Query: 4 AVGRGFLLQPSSSS--SFICNDVNKSS----IGITSAFLPAKSGTTRRYLATVVRAQQ-- 55
+V ++ PSSSS + + N+V + +G + K+ RR TV +A Q
Sbjct: 13 SVTAAVVVAPSSSSQKTILANNVGAAKASFLVGRAVSLRQTKAAMPRRAAVTVSQAVQTE 72
Query: 56 RPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFT 115
RP W PG PPP+LDG+L GDFGFDPLGLG DPE+L+W VQAELVH R+AM G AGI
Sbjct: 73 RPLWFPGNTPPPWLDGSLPGDFGFDPLGLGSDPETLKWMVQAELVHCRWAMLGAAGIFIP 132
Query: 116 DLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGS 175
+L GI P WY AG +E+ F TLF+V+++ +G+AE +R+ D + PGS +
Sbjct: 133 ELCTKLGILNTPSWYTAGELEY-FTDKTTLFVVEMIFLGWAEGRRWADILEPGSVNTDPI 191
Query: 176 FFGLEAALEGLEPGYPGGPLLNPLGLAK-DIRNAREWKLKEIKNGLICLV 224
F L G + GYPGG +PLG +E + KEIKNG + ++
Sbjct: 192 F--PNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAML 239
>gi|666054|emb|CAA59049.1| LHCI-680, photosystem I antenna protein [Hordeum vulgare subsp.
vulgare]
gi|326493584|dbj|BAJ85253.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 255
Score = 174 bits (440), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 96/198 (48%), Positives = 120/198 (60%), Gaps = 6/198 (3%)
Query: 30 GITSAFLPA--KSGTTRRYLATVVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGED 87
G ++FL A K+ +R A A +RP W PG PPP+LDG+L GDFGFDP GLG D
Sbjct: 22 GARTSFLGAAGKAAASRTSFAVRAAAPERPIWFPGSTPPPWLDGSLPGDFGFDPWGLGSD 81
Query: 88 PESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFI 147
PESLRW VQAELVH R+AM G AGI +LL GI P WY AG E+ F T TLFI
Sbjct: 82 PESLRWNVQAELVHCRWAMLGAAGIFIPELLTKIGILNTPSWYTAGEQEY-FTDTTTLFI 140
Query: 148 VQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAK-DIR 206
V+L+L+G+AE +R+ D I PG + F L G + GYPGG +PLG
Sbjct: 141 VELILIGWAEGRRWADIIKPGCVNTDPIF--PNNKLTGTDVGYPGGLWFDPLGYGTGSPE 198
Query: 207 NAREWKLKEIKNGLICLV 224
+E + KEIKNG + ++
Sbjct: 199 KLKELRTKEIKNGRLAML 216
>gi|115472983|ref|NP_001060090.1| Os07g0577600 [Oryza sativa Japonica Group]
gi|34393511|dbj|BAC83072.1| putative photosystem I antenna protein [Oryza sativa Japonica
Group]
gi|113611626|dbj|BAF22004.1| Os07g0577600 [Oryza sativa Japonica Group]
gi|125558916|gb|EAZ04452.1| hypothetical protein OsI_26600 [Oryza sativa Indica Group]
gi|125600834|gb|EAZ40410.1| hypothetical protein OsJ_24861 [Oryza sativa Japonica Group]
gi|215678915|dbj|BAG96345.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215679008|dbj|BAG96438.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215679048|dbj|BAG96478.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215686399|dbj|BAG87660.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737439|dbj|BAG96569.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737698|dbj|BAG96828.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737734|dbj|BAG96864.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215767334|dbj|BAG99562.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 263
Score = 172 bits (437), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 91/188 (48%), Positives = 114/188 (60%), Gaps = 4/188 (2%)
Query: 38 AKSGTTRRYLATVVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQA 97
A+S + R A A RP W PG PPP+LDG+L GDFGFDPLGLG DPESLRW VQA
Sbjct: 40 AESSSARASFAVRAAAPDRPIWFPGSTPPPWLDGSLPGDFGFDPLGLGSDPESLRWNVQA 99
Query: 98 ELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAE 157
ELVH R+AM G AGI + L GI P WY AG ++ F T TLFI++L+L+G+AE
Sbjct: 100 ELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAGEQQY-FTDTTTLFIIELILIGWAE 158
Query: 158 TKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAK-DIRNAREWKLKEI 216
+R+ D I PG + F L G + GYPGG +PLG +E + KEI
Sbjct: 159 GRRWADIIKPGCVNTDPIF--PNNKLTGTDVGYPGGLWFDPLGWGTGSPEKIKELRTKEI 216
Query: 217 KNGLICLV 224
KNG + ++
Sbjct: 217 KNGRLAML 224
>gi|384247025|gb|EIE20513.1| light-harvesting complex I protein [Coccomyxa subellipsoidea C-169]
Length = 259
Score = 171 bits (432), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 92/210 (43%), Positives = 130/210 (61%), Gaps = 16/210 (7%)
Query: 25 NKSSIGITSAFLPAKSGTTR---RYLATVVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDP 81
+KS++ A K+ T R R++A V A R W PG P P+LDG+L GDFGFDP
Sbjct: 13 SKSAVAARPAAFSGKARTARVQARFVA--VSAADRQVWFPGNAPAPHLDGSLPGDFGFDP 70
Query: 82 LGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAV------ 135
L LG DP+ L+W+ QAELVH R AM VAGILF + G+ +P WY+AG+V
Sbjct: 71 LSLGSDPQLLKWFQQAELVHGRTAMTAVAGILFPAVATKAGVVNIPQWYDAGSVWVQNNP 130
Query: 136 EFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPL 195
F FA+ L +Q++L G+ ETKR++D+ +PGSQ +GSF G+ +G+ GYPGG L
Sbjct: 131 NFPFAA---LLFIQIILTGWVETKRWLDFKNPGSQA-DGSFLGVTDDFKGVANGYPGGKL 186
Query: 196 LNPLGLAKDIRNA-REWKLKEIKNGLICLV 224
+P GL++ ++++ EIKNG + +V
Sbjct: 187 FDPFGLSRGSEGQLQKYQENEIKNGRLAMV 216
>gi|388515647|gb|AFK45885.1| unknown [Lotus japonicus]
Length = 269
Score = 171 bits (432), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 97/211 (45%), Positives = 122/211 (57%), Gaps = 14/211 (6%)
Query: 25 NKSSIGITSAFLPAKSGTTRRYLA--------TVVRAQQ--RPTWLPGVDPPPYLDGTLA 74
N S +G T AFL + + A TV A + RP W PG PPP+LDG+L
Sbjct: 23 NGSPLGTTKAFLSGRKLKVNTFTAPVGARSTTTVCAAAEPDRPLWFPGSTPPPWLDGSLP 82
Query: 75 GDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGA 134
GDFGFDPLGL DPESLRW VQAELVH R+AM G AGI + L GI P WY AG
Sbjct: 83 GDFGFDPLGLSSDPESLRWNVQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAGE 142
Query: 135 VEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGP 194
E+ F T TLFIV+L+ +G+AE +R+ D + PGS + F L G + GYPGG
Sbjct: 143 QEY-FTDTTTLFIVELIFIGWAEGRRWADILKPGSVNTDPIF--PNNKLTGTDVGYPGGL 199
Query: 195 LLNPLGLAK-DIRNAREWKLKEIKNGLICLV 224
+PLG + +E + KEIKNG + ++
Sbjct: 200 WFDPLGWGSGSPQKLKELRTKEIKNGRLAML 230
>gi|602359|emb|CAA57492.1| Type II chlorophyll a/b binding protein from photosystem I [Pisum
sativum]
Length = 269
Score = 169 bits (429), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 98/211 (46%), Positives = 125/211 (59%), Gaps = 14/211 (6%)
Query: 25 NKSSIGITSAFLPAK--------SGTTRRYLATV--VRAQQRPTWLPGVDPPPYLDGTLA 74
N S G + AFL K S + R +TV V RP W PG PPP+LDG+L
Sbjct: 23 NGSPSGTSKAFLGRKLKVNSSTASPSRVRSTSTVCTVAEPDRPLWFPGSTPPPWLDGSLP 82
Query: 75 GDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGA 134
GDFGFDPLGLG DPESLRW VQAELVH+R+AM G AGI + L GI P WY AG
Sbjct: 83 GDFGFDPLGLGSDPESLRWNVQAELVHSRWAMLGAAGIFIPEFLTKLGILNTPSWYTAGE 142
Query: 135 VEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGP 194
E+ F T TLFIV+L+ +G+AE +R+ D ++PG + F L G + GYPGG
Sbjct: 143 QEY-FTDTTTLFIVELVFIGWAEGRRWADILNPGCVNTDPIF--PNNKLTGTDVGYPGGL 199
Query: 195 LLNPLGL-AKDIRNAREWKLKEIKNGLICLV 224
+PLG + + +E + KEIKNG + ++
Sbjct: 200 WFDPLGWGSASPQKLKELRTKEIKNGRLAML 230
>gi|268612159|pdb|2WSC|2 Chain 2, Improved Model Of Plant Photosystem I
gi|268612177|pdb|2WSE|2 Chain 2, Improved Model Of Plant Photosystem I
gi|268612195|pdb|2WSF|2 Chain 2, Improved Model Of Plant Photosystem I
Length = 269
Score = 169 bits (429), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 98/211 (46%), Positives = 125/211 (59%), Gaps = 14/211 (6%)
Query: 25 NKSSIGITSAFLPAK--------SGTTRRYLATV--VRAQQRPTWLPGVDPPPYLDGTLA 74
N S G + AFL K S + R +TV V RP W PG PPP+LDG+L
Sbjct: 23 NGSPSGTSKAFLGRKLKVNSSTASPSRVRSTSTVCTVAEPDRPLWFPGSTPPPWLDGSLP 82
Query: 75 GDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGA 134
GDFGFDPLGLG DPESLRW VQAELVH+R+AM G AGI + L GI P WY AG
Sbjct: 83 GDFGFDPLGLGSDPESLRWNVQAELVHSRWAMLGAAGIFIPEFLTKLGILNTPSWYTAGE 142
Query: 135 VEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGP 194
E+ F T TLFIV+L+ +G+AE +R+ D ++PG + F L G + GYPGG
Sbjct: 143 QEY-FTDTTTLFIVELVFIGWAEGRRWADILNPGCVNTDPIF--PNNKLTGTDVGYPGGL 199
Query: 195 LLNPLGL-AKDIRNAREWKLKEIKNGLICLV 224
+PLG + + +E + KEIKNG + ++
Sbjct: 200 WFDPLGWGSASPQKLKELRTKEIKNGRLAML 230
>gi|356520200|ref|XP_003528752.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
isoform 2 [Glycine max]
Length = 281
Score = 169 bits (428), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 96/212 (45%), Positives = 123/212 (58%), Gaps = 10/212 (4%)
Query: 14 SSSSSFICNDVNKSSIGITSAFLPAKSGTTRRYLATVVRAQQRPTWLPGVDPPPYLDGTL 73
S+ +SF+ K + +A + A+S TT V RP W PG PPP+LDG+L
Sbjct: 40 STKASFLSG--RKLKVNSFTAPVGARSSTT----VCAVAEPDRPLWFPGSTPPPWLDGSL 93
Query: 74 AGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAG 133
GDFGFDPLGLG DPESLRW VQAELVH R+AM G AGI + L GI P WY AG
Sbjct: 94 PGDFGFDPLGLGSDPESLRWNVQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAG 153
Query: 134 AVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGG 193
+E+ F T TLF+V+L +G+AE +R+ D I PG + F L G + GYPGG
Sbjct: 154 ELEY-FTDTTTLFVVELFFIGWAEGRRWADIIKPGCVNTDPIF--PNNKLTGTDVGYPGG 210
Query: 194 PLLNPLGLAK-DIRNAREWKLKEIKNGLICLV 224
+PLG +E + KEIKNG + ++
Sbjct: 211 LWFDPLGWGSGSPEKIKELRTKEIKNGRLAML 242
>gi|356520198|ref|XP_003528751.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
isoform 1 [Glycine max]
Length = 270
Score = 169 bits (427), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 96/212 (45%), Positives = 123/212 (58%), Gaps = 10/212 (4%)
Query: 14 SSSSSFICNDVNKSSIGITSAFLPAKSGTTRRYLATVVRAQQRPTWLPGVDPPPYLDGTL 73
S+ +SF+ K + +A + A+S TT V RP W PG PPP+LDG+L
Sbjct: 29 STKASFLSG--RKLKVNSFTAPVGARSSTT----VCAVAEPDRPLWFPGSTPPPWLDGSL 82
Query: 74 AGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAG 133
GDFGFDPLGLG DPESLRW VQAELVH R+AM G AGI + L GI P WY AG
Sbjct: 83 PGDFGFDPLGLGSDPESLRWNVQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAG 142
Query: 134 AVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGG 193
+E+ F T TLF+V+L +G+AE +R+ D I PG + F L G + GYPGG
Sbjct: 143 ELEY-FTDTTTLFVVELFFIGWAEGRRWADIIKPGCVNTDPIF--PNNKLTGTDVGYPGG 199
Query: 194 PLLNPLGLAK-DIRNAREWKLKEIKNGLICLV 224
+PLG +E + KEIKNG + ++
Sbjct: 200 LWFDPLGWGSGSPEKIKELRTKEIKNGRLAML 231
>gi|358249066|ref|NP_001239987.1| uncharacterized protein LOC100794944 [Glycine max]
gi|255635762|gb|ACU18230.1| unknown [Glycine max]
Length = 267
Score = 168 bits (426), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 90/184 (48%), Positives = 112/184 (60%), Gaps = 7/184 (3%)
Query: 45 RYLATVVRA---QQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVH 101
R + T V A RP W PG PPP+LDGTL GDFGFDPLGLG DPESLRW VQAELVH
Sbjct: 48 RSMGTTVCAVAEPDRPLWFPGSTPPPWLDGTLPGDFGFDPLGLGSDPESLRWNVQAELVH 107
Query: 102 ARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRY 161
R+AM G AGI + L G+ P WY AG +E+ F T TLFIV+L +G+AE +R+
Sbjct: 108 CRWAMLGAAGIFIPEFLTKIGVLNTPSWYSAGELEY-FTDTTTLFIVELFFIGWAEGRRW 166
Query: 162 MDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAK-DIRNAREWKLKEIKNGL 220
D I PG + F L G + GYPGG +PLG + ++ + KEIKNG
Sbjct: 167 ADIIKPGCVNTDPIF--PNNKLTGTDVGYPGGLWFDPLGWGTGSPQKIKDLRTKEIKNGR 224
Query: 221 ICLV 224
+ ++
Sbjct: 225 LAML 228
>gi|224072580|ref|XP_002303791.1| light-harvesting complex I protein Lhca2 [Populus trichocarpa]
gi|222841223|gb|EEE78770.1| light-harvesting complex I protein Lhca2 [Populus trichocarpa]
Length = 269
Score = 168 bits (425), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 91/187 (48%), Positives = 112/187 (59%), Gaps = 5/187 (2%)
Query: 40 SGTTRRYLATVVRAQ-QRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAE 98
S T R + V A RP W PG PPP+LDG+L GDFGFDPLGLG DPE+LRW VQAE
Sbjct: 47 SPTAARSVTVCVAADPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGLGSDPETLRWNVQAE 106
Query: 99 LVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAET 158
LVH R+AM G AGI + L GI P WY AG VE+ F T TLFIV+L +G+AE
Sbjct: 107 LVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYSAGEVEY-FTDTTTLFIVELFFIGWAEG 165
Query: 159 KRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAK-DIRNAREWKLKEIK 217
+R+ D + PG + F L G + GYPGG +PLG +E + KEIK
Sbjct: 166 RRWADILKPGCVNTDPIF--PNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIK 223
Query: 218 NGLICLV 224
NG + ++
Sbjct: 224 NGRLAML 230
>gi|118487549|gb|ABK95601.1| unknown [Populus trichocarpa]
Length = 269
Score = 168 bits (425), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 91/187 (48%), Positives = 112/187 (59%), Gaps = 5/187 (2%)
Query: 40 SGTTRRYLATVVRAQ-QRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAE 98
S T R + V A RP W PG PPP+LDG+L GDFGFDPLGLG DPE+LRW VQAE
Sbjct: 47 SPTAARSVTVCVAADPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGLGSDPETLRWNVQAE 106
Query: 99 LVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAET 158
LVH R+AM G AGI + L GI P WY AG VE+ F T TLFIV+L +G+AE
Sbjct: 107 LVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYSAGEVEY-FTDTTTLFIVELFFIGWAEG 165
Query: 159 KRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAK-DIRNAREWKLKEIK 217
+R+ D + PG + F L G + GYPGG +PLG +E + KEIK
Sbjct: 166 RRWADILKPGCVNTDPIF--PNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIK 223
Query: 218 NGLICLV 224
NG + ++
Sbjct: 224 NGRLAML 230
>gi|357122261|ref|XP_003562834.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
[Brachypodium distachyon]
Length = 258
Score = 168 bits (425), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 90/179 (50%), Positives = 110/179 (61%), Gaps = 4/179 (2%)
Query: 47 LATVVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAM 106
A A +RP W PG PPP+LDG+L GDFGFDP GLG DPESLRW VQAELVH R+AM
Sbjct: 44 FAVRAAAPERPIWFPGSTPPPWLDGSLPGDFGFDPWGLGSDPESLRWNVQAELVHCRWAM 103
Query: 107 AGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYIS 166
G AGI +LL GI P WY AG + FA T TLFIV+L+L+G+AE +R+ D I
Sbjct: 104 LGAAGIFIPELLTKIGILNTPSWYTAGEQTY-FADTTTLFIVELILIGWAEGRRWADIIK 162
Query: 167 PGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAK-DIRNAREWKLKEIKNGLICLV 224
PG + F L G + GYPGG +PLG +E + KEIKNG + ++
Sbjct: 163 PGCVNTDPIF--PNNKLTGTDVGYPGGLWFDPLGYGSGSPEKIKELRTKEIKNGRLAML 219
>gi|356559464|ref|XP_003548019.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
isoform 2 [Glycine max]
Length = 281
Score = 167 bits (423), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 96/212 (45%), Positives = 122/212 (57%), Gaps = 10/212 (4%)
Query: 14 SSSSSFICNDVNKSSIGITSAFLPAKSGTTRRYLATVVRAQQRPTWLPGVDPPPYLDGTL 73
S+ +SF+ K + +A + A+S TT V RP W PG PPP+LDG+L
Sbjct: 40 STKASFLSG--RKLKVNNFTAPVGARSSTT----VCAVAEPDRPLWFPGSTPPPWLDGSL 93
Query: 74 AGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAG 133
GDFGFDPLGL DPESLRW VQAELVH R+AM G AGI + L GI P WY AG
Sbjct: 94 PGDFGFDPLGLASDPESLRWNVQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAG 153
Query: 134 AVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGG 193
+E+ F T TLFIV+L +G+AE +R+ D I PG + F L G + GYPGG
Sbjct: 154 ELEY-FTDTTTLFIVELFFIGWAEGRRWADIIKPGCVNTDPIF--PNNKLTGTDVGYPGG 210
Query: 194 PLLNPLGLAK-DIRNAREWKLKEIKNGLICLV 224
+PLG +E + KEIKNG + ++
Sbjct: 211 LWFDPLGWGSGSPEKIKELRTKEIKNGRLAML 242
>gi|356559462|ref|XP_003548018.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
isoform 1 [Glycine max]
gi|255645717|gb|ACU23352.1| unknown [Glycine max]
Length = 270
Score = 167 bits (423), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 96/212 (45%), Positives = 122/212 (57%), Gaps = 10/212 (4%)
Query: 14 SSSSSFICNDVNKSSIGITSAFLPAKSGTTRRYLATVVRAQQRPTWLPGVDPPPYLDGTL 73
S+ +SF+ K + +A + A+S TT V RP W PG PPP+LDG+L
Sbjct: 29 STKASFLSG--RKLKVNNFTAPVGARSSTT----VCAVAEPDRPLWFPGSTPPPWLDGSL 82
Query: 74 AGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAG 133
GDFGFDPLGL DPESLRW VQAELVH R+AM G AGI + L GI P WY AG
Sbjct: 83 PGDFGFDPLGLASDPESLRWNVQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAG 142
Query: 134 AVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGG 193
+E+ F T TLFIV+L +G+AE +R+ D I PG + F L G + GYPGG
Sbjct: 143 ELEY-FTDTTTLFIVELFFIGWAEGRRWADIIKPGCVNTDPIF--PNNKLTGTDVGYPGG 199
Query: 194 PLLNPLGLAK-DIRNAREWKLKEIKNGLICLV 224
+PLG +E + KEIKNG + ++
Sbjct: 200 LWFDPLGWGSGSPEKIKELRTKEIKNGRLAML 231
>gi|224057740|ref|XP_002299309.1| light-harvesting complex I protein Lhca2 [Populus trichocarpa]
gi|222846567|gb|EEE84114.1| light-harvesting complex I protein Lhca2 [Populus trichocarpa]
Length = 272
Score = 167 bits (423), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 97/221 (43%), Positives = 123/221 (55%), Gaps = 14/221 (6%)
Query: 15 SSSSFICNDVNKSSIGITSA-FLPAKSGTTRRYLA---------TVVRAQQRPTWLPGVD 64
SSS + + +G T A FL K ++Y A V RP W PG
Sbjct: 16 SSSRQVLSQKTGFLVGSTKASFLSGKKLRLKKYTAPTAARSVTVCVAADPDRPLWFPGST 75
Query: 65 PPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR 124
PPP+LDG+L GDFGFDPLGLG DPE+LRW VQAELVH R+AM G AGI + L GI
Sbjct: 76 PPPWLDGSLPGDFGFDPLGLGSDPETLRWNVQAELVHCRWAMLGAAGIFIPEFLTKIGIL 135
Query: 125 ELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALE 184
P WY AG +E+ F T TLFIV+L +G+AE +R+ D + PG + F L
Sbjct: 136 NTPSWYTAGELEY-FTDTTTLFIVELFFIGWAEGRRWADILKPGCVNTDPIF--PNNKLT 192
Query: 185 GLEPGYPGGPLLNPLGLAK-DIRNAREWKLKEIKNGLICLV 224
G + GYPGG +PLG +E + KEIKNG + ++
Sbjct: 193 GTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAML 233
>gi|164612849|gb|ABY63668.1| chloroplast chlorophyll a/b binding protein [Phyllostachys edulis]
Length = 262
Score = 167 bits (422), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 92/204 (45%), Positives = 118/204 (57%), Gaps = 9/204 (4%)
Query: 27 SSIGITSAFLPA-----KSGTTRRYLATVVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDP 81
++ G ++FL A + R A A RP W PG PPP+LDG+L GDFGFDP
Sbjct: 23 AAAGARTSFLGAGRTKLREAAARPSFAVSAAAPDRPIWFPGSVPPPWLDGSLPGDFGFDP 82
Query: 82 LGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFAS 141
GLG DPESLRW VQAELVH R+AM G AGI + L GI P WY AG ++ F
Sbjct: 83 FGLGSDPESLRWNVQAELVHCRWAMLGAAGIFIPEFLTKIGILSTPSWYTAGEQQY-FTD 141
Query: 142 TRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGL 201
T TLFI++L+L+G+AE +R+ D I PG + F L G + GYPGG +PLG
Sbjct: 142 TTTLFIIELILIGWAEGRRWADIIKPGCVNTDPIF--PNNKLTGTDVGYPGGLWFDPLGW 199
Query: 202 AK-DIRNAREWKLKEIKNGLICLV 224
+E + KEIKNG + ++
Sbjct: 200 GSGSPEKLKELRTKEIKNGRLAML 223
>gi|145079172|tpg|DAA05902.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca7 [Acetabularia acetabulum]
Length = 214
Score = 167 bits (422), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 99/217 (45%), Positives = 131/217 (60%), Gaps = 28/217 (12%)
Query: 29 IGITSAFLPAKSGTTRRYLATVVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDP 88
+G TS P S TRR ++ V +A ++P WLPGV+ P +L+ L D+GFDPLGLG +P
Sbjct: 6 LGQTSRVTPTNS--TRR-MSPVTQATEQPVWLPGVNVPQHLNRNLPADYGFDPLGLGSEP 62
Query: 89 ESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFA----STRT 144
E+L+WYVQAELVH RFAM GVAGIL LL GI +P WYEAG V + + +T
Sbjct: 63 EALKWYVQAELVHCRFAMLGVAGILIPGLLTKVGILNVPQWYEAGKVAIESQPFGLNFQT 122
Query: 145 LFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEA------ALEGL-EPGYPGGPLLN 197
L QL +M +AETKR++++ +PGSQ+ S+ G E AL G +P YPGG L N
Sbjct: 123 LLGFQLFMMTWAETKRWVEFKNPGSQSNPDSYPGAEMLPGKVFALGGSGDPNYPGG-LFN 181
Query: 198 PLGLAKDIRNAREWKLKEIKNG--------LICLVLC 226
P+G+ D K+KEI NG + C + C
Sbjct: 182 PMGMGDD-----SMKVKEIANGRTACLRFRICCTIFC 213
>gi|18376587|emb|CAC81065.1| putative chlorophyll A-B binding protein of LHCI type II precursor
[Picea abies]
Length = 278
Score = 167 bits (422), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 89/199 (44%), Positives = 118/199 (59%), Gaps = 6/199 (3%)
Query: 29 IGITSAFLPAKSGTTRRYLATVVRAQQ--RPTWLPGVDPPPYLDGTLAGDFGFDPLGLGE 86
+G + +K+ RR V A Q RP W PG PPP+LDG+L DFGFDPLGLG
Sbjct: 44 VGRAVSLRQSKAAMPRRAAVIVSEAVQTERPLWFPGTTPPPWLDGSLPADFGFDPLGLGS 103
Query: 87 DPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLF 146
DPE+L+W VQ+ELVH R+AM G AGI +LL GI P WY AG +E+ F TLF
Sbjct: 104 DPETLKWNVQSELVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGELEY-FTDKTTLF 162
Query: 147 IVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAK-DI 205
+V+++ +G+AE +R+ D I PGS + F L G + GYPGG +PLG
Sbjct: 163 VVEMIFLGWAEGRRWADIIKPGSVNTDPIF--PNNKLTGTDVGYPGGLWFDPLGWGSGSP 220
Query: 206 RNAREWKLKEIKNGLICLV 224
+E + KEIKNG + ++
Sbjct: 221 EKIKELRTKEIKNGRLAML 239
>gi|118487538|gb|ABK95596.1| unknown [Populus trichocarpa]
Length = 269
Score = 166 bits (421), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 89/185 (48%), Positives = 111/185 (60%), Gaps = 5/185 (2%)
Query: 42 TTRRYLATVVRAQ-QRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELV 100
T R + V A RP W PG PPP+LDG+L GDFGFDPLGLG DPE+LRW VQAELV
Sbjct: 49 TAARSVTVCVAADPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGLGSDPETLRWNVQAELV 108
Query: 101 HARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKR 160
H R+AM G AGI + L GI P WY AG +E+ F T TLFIV+L +G+AE +R
Sbjct: 109 HCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAGELEY-FTDTTTLFIVELFFIGWAEGRR 167
Query: 161 YMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAK-DIRNAREWKLKEIKNG 219
+ D + PG + F L G + GYPGG +PLG +E + KEIKNG
Sbjct: 168 WADILKPGCVNTDPIF--PNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNG 225
Query: 220 LICLV 224
+ ++
Sbjct: 226 RLAML 230
>gi|87313173|gb|ABD37883.1| light-harvesting chlorophyll-a/b binding protein Lhca5.1
[Mesostigma viride]
Length = 195
Score = 166 bits (421), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 90/170 (52%), Positives = 110/170 (64%), Gaps = 10/170 (5%)
Query: 38 AKSGTTRRYLATVVRA-------QQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPES 90
AKSG +VVRA +RP W PG P +L+G+L GD+GFDP+G G P S
Sbjct: 29 AKSGRNAAPKRSVVRAGGAAPEPSERPLWYPGTKAPEWLNGSLPGDYGFDPVGFGSSPSS 88
Query: 91 LRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQL 150
LRW V AELVHAR+AM GVAG+L +L+ VT +P WYEAG V + FA T TL +V
Sbjct: 89 LRWMVHAELVHARWAMLGVAGVLGQELVHVTN-GSIPHWYEAGKVSY-FADTPTLIVVMH 146
Query: 151 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLG 200
+LMGF ETKRY D ++PGSQ + G F G E + G PGYPGG L +PLG
Sbjct: 147 ILMGFVETKRYFDIVNPGSQAQPG-FAGAERLMLGTSPGYPGGILFDPLG 195
>gi|358346569|ref|XP_003637339.1| Chlorophyll a-b binding protein [Medicago truncatula]
gi|355503274|gb|AES84477.1| Chlorophyll a-b binding protein [Medicago truncatula]
Length = 268
Score = 166 bits (420), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 95/211 (45%), Positives = 121/211 (57%), Gaps = 14/211 (6%)
Query: 25 NKSSIGITSAFLPAKSGTTR--------RYLATVVRAQQ--RPTWLPGVDPPPYLDGTLA 74
N S +G + AFL K R TV A + RP W PG PPP+LDG+L
Sbjct: 22 NGSPMGTSKAFLGRKLKVNSNIAAPVRVRSTTTVCAAAEPDRPLWFPGSTPPPWLDGSLP 81
Query: 75 GDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGA 134
GDFGFDPLGL DPESL+W VQAELVH R+AM G AGI + L GI P WY AG
Sbjct: 82 GDFGFDPLGLSSDPESLKWNVQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAGE 141
Query: 135 VEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGP 194
E+ F T TLFIV+L+ +G+AE +R+ D ++PG + F L G + GYPGG
Sbjct: 142 QEY-FTDTTTLFIVELIFIGWAEGRRWADILNPGCVNTDPIF--PNNKLTGTDVGYPGGL 198
Query: 195 LLNPLGLAK-DIRNAREWKLKEIKNGLICLV 224
+PLG + +E + KEIKNG + ++
Sbjct: 199 WFDPLGWGSGSPQKLKELRTKEIKNGRLAML 229
>gi|115765|sp|P10708.1|CB12_SOLLC RecName: Full=Chlorophyll a-b binding protein 7, chloroplastic;
AltName: Full=LHCI type II CAB-7; Flags: Precursor
gi|19180|emb|CAA32197.1| chlorophyll a/b-binding protein [Solanum lycopersicum]
gi|170431|gb|AAA34159.1| chlorophyll a/b-binding protein [Solanum lycopersicum]
gi|226546|prf||1601518A chlorophyll a/b binding protein II
Length = 270
Score = 166 bits (420), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 92/185 (49%), Positives = 111/185 (60%), Gaps = 6/185 (3%)
Query: 43 TRRYLATVVRAQQ--RPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELV 100
T R TV A RP W PG PPP+LDG+L GDFGFDPLGL DPESLRW QAELV
Sbjct: 50 TARSATTVCVAADPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELV 109
Query: 101 HARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKR 160
H R+AM G AGI +LL GI P WY AG E+ F T TLFIV+L+L+G+AE +R
Sbjct: 110 HCRWAMLGAAGIFIPELLTKIGILNTPSWYTAGEQEY-FTDTTTLFIVELVLIGWAEGRR 168
Query: 161 YMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAK-DIRNAREWKLKEIKNG 219
+ D I PG + F L G + GYPGG +PLG +E + KEIKNG
Sbjct: 169 WADIIKPGCVNTDPIF--PNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNG 226
Query: 220 LICLV 224
+ ++
Sbjct: 227 RLAML 231
>gi|116779438|gb|ABK21282.1| unknown [Picea sitchensis]
gi|116782291|gb|ABK22450.1| unknown [Picea sitchensis]
gi|116784092|gb|ABK23211.1| unknown [Picea sitchensis]
gi|116786476|gb|ABK24121.1| unknown [Picea sitchensis]
gi|116791795|gb|ABK26112.1| unknown [Picea sitchensis]
gi|116791985|gb|ABK26188.1| unknown [Picea sitchensis]
gi|116792462|gb|ABK26376.1| unknown [Picea sitchensis]
gi|148908663|gb|ABR17439.1| unknown [Picea sitchensis]
gi|224284338|gb|ACN39904.1| unknown [Picea sitchensis]
gi|224284452|gb|ACN39960.1| unknown [Picea sitchensis]
gi|224284659|gb|ACN40062.1| unknown [Picea sitchensis]
gi|224284741|gb|ACN40101.1| unknown [Picea sitchensis]
gi|224285484|gb|ACN40463.1| unknown [Picea sitchensis]
Length = 278
Score = 166 bits (419), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 89/199 (44%), Positives = 117/199 (58%), Gaps = 6/199 (3%)
Query: 29 IGITSAFLPAKSGTTRRYLATVVRAQQ--RPTWLPGVDPPPYLDGTLAGDFGFDPLGLGE 86
+G + +K+ RR V A Q RP W PG PPP+LDG+L DFGFDPLGLG
Sbjct: 44 VGRAVSLRQSKAAMPRRAAVIVSEAVQTERPLWFPGTTPPPWLDGSLPADFGFDPLGLGS 103
Query: 87 DPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLF 146
DPE+L+W VQ+ELVH R+AM G AGI +LL GI P WY AG E+ F TLF
Sbjct: 104 DPETLKWNVQSELVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGEQEY-FTDKTTLF 162
Query: 147 IVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAK-DI 205
+V+++ +G+AE +R+ D I PGS + F L G + GYPGG +PLG
Sbjct: 163 VVEMIFLGWAEGRRWADIIKPGSVNTDPIF--PNNKLTGTDVGYPGGLWFDPLGWGSGSP 220
Query: 206 RNAREWKLKEIKNGLICLV 224
+E + KEIKNG + ++
Sbjct: 221 EKIKELRTKEIKNGRLAML 239
>gi|388495628|gb|AFK35880.1| unknown [Medicago truncatula]
Length = 268
Score = 166 bits (419), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 93/212 (43%), Positives = 121/212 (57%), Gaps = 16/212 (7%)
Query: 25 NKSSIGITSAFLPAKSGTTRRYLATVVRAQ-----------QRPTWLPGVDPPPYLDGTL 73
N S +G + AF P + +A VR + RP W PG PPP+LDG+L
Sbjct: 22 NGSPMGTSKAF-PGRKLKVNSNIAAPVRVRSTTTVCAAAEPDRPLWFPGSTPPPWLDGSL 80
Query: 74 AGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAG 133
GDFGFDPLGL DPESL+W VQAELVH R+AM G AGI + L GI P WY AG
Sbjct: 81 PGDFGFDPLGLSSDPESLKWNVQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAG 140
Query: 134 AVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGG 193
E+ F T TLFIV+L+ +G+AE +R+ D ++PG + F L G + GYPGG
Sbjct: 141 EQEY-FTDTTTLFIVELIFIGWAEGRRWADILNPGCVNTDPIF--PNNKLTGTDVGYPGG 197
Query: 194 PLLNPLGLAK-DIRNAREWKLKEIKNGLICLV 224
+PLG + +E + KEIKNG + ++
Sbjct: 198 LWFDPLGWGSGSPQKLKELRTKEIKNGRLAML 229
>gi|212274977|ref|NP_001130616.1| uncharacterized protein LOC100191715 [Zea mays]
gi|195636368|gb|ACG37652.1| chlorophyll a-b binding protein [Zea mays]
gi|414590632|tpg|DAA41203.1| TPA: chlorophyll a-b binding protein [Zea mays]
Length = 260
Score = 165 bits (418), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 85/171 (49%), Positives = 107/171 (62%), Gaps = 4/171 (2%)
Query: 55 QRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILF 114
RP W PG PPP+LDG+L GDFGFDP GLG DPESLRW VQAELVH R+AM G AGI
Sbjct: 54 NRPIWFPGSTPPPWLDGSLPGDFGFDPWGLGSDPESLRWNVQAELVHCRWAMLGAAGIFI 113
Query: 115 TDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEG 174
+ L G+ P WY AG ++ F T TLFI++L+L+G+AE +R+ D I PGS +
Sbjct: 114 PEFLTKIGVLNTPFWYTAGEQQY-FTDTTTLFIIELILIGWAEGRRWADIIKPGSVNTDP 172
Query: 175 SFFGLEAALEGLEPGYPGGPLLNPLGLAK-DIRNAREWKLKEIKNGLICLV 224
F L G + GYPGG +PLG +E + KEIKNG + ++
Sbjct: 173 IF--PSNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAML 221
>gi|226499760|ref|NP_001148893.1| chlorophyll a-b binding protein [Zea mays]
gi|195622990|gb|ACG33325.1| chlorophyll a-b binding protein [Zea mays]
gi|414887286|tpg|DAA63300.1| TPA: chlorophyll a-b binding protein isoform 1 [Zea mays]
gi|414887287|tpg|DAA63301.1| TPA: chlorophyll a-b binding protein isoform 2 [Zea mays]
gi|414887288|tpg|DAA63302.1| TPA: chlorophyll a-b binding protein isoform 3 [Zea mays]
Length = 270
Score = 165 bits (418), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 88/179 (49%), Positives = 110/179 (61%), Gaps = 7/179 (3%)
Query: 50 VVRA---QQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAM 106
VRA RP W PG PPP+LDG+L GDFGFDP GLG DPESLRW VQAELVH R+AM
Sbjct: 56 AVRAAADSDRPIWFPGSTPPPWLDGSLPGDFGFDPWGLGSDPESLRWNVQAELVHCRWAM 115
Query: 107 AGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYIS 166
G AGI + L G+ P WY AG ++ F T TLFI++L+L+G+AE +R+ D I
Sbjct: 116 LGAAGIFIPEFLTKIGVLNTPFWYTAGEQQY-FTDTTTLFIIELILIGWAEGRRWADIIK 174
Query: 167 PGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAK-DIRNAREWKLKEIKNGLICLV 224
PGS + F L G + GYPGG +PLG +E + KEIKNG + ++
Sbjct: 175 PGSVNTDPIF--PSNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAML 231
>gi|225425420|ref|XP_002277906.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic [Vitis
vinifera]
gi|297738455|emb|CBI27656.3| unnamed protein product [Vitis vinifera]
Length = 271
Score = 164 bits (416), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 85/189 (44%), Positives = 114/189 (60%), Gaps = 5/189 (2%)
Query: 38 AKSGTTRRYLATVVRAQ-QRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQ 96
A + TR + + A RP W PG PPP+LDG+L GDFGFDPLGLG DPE+L+W VQ
Sbjct: 47 APAAGTRSFTVSAAAADPNRPLWFPGSTPPPWLDGSLPGDFGFDPLGLGSDPETLKWMVQ 106
Query: 97 AELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFA 156
+E+VH R+AM G AGI + L GI P WY AG +E+ F TLFIV+++ +G+A
Sbjct: 107 SEIVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAGELEY-FTDKTTLFIVEMIFIGWA 165
Query: 157 ETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNA-REWKLKE 215
E +R+ D I PG + F L G + GYPGG +PLG + +E + KE
Sbjct: 166 EGRRWADIIKPGCVNTDPIF--PNNKLTGTDVGYPGGLWFDPLGWGSGSPDKIKELRTKE 223
Query: 216 IKNGLICLV 224
IKNG + ++
Sbjct: 224 IKNGRLAML 232
>gi|147841900|emb|CAN72005.1| hypothetical protein VITISV_033663 [Vitis vinifera]
Length = 272
Score = 164 bits (414), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 85/189 (44%), Positives = 114/189 (60%), Gaps = 5/189 (2%)
Query: 38 AKSGTTRRYLATVVRAQ-QRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQ 96
A + TR + + A RP W PG PPP+LDG+L GDFGFDPLGLG DPE+L+W VQ
Sbjct: 48 APAAGTRSFTVSAAAADPNRPLWFPGSTPPPWLDGSLPGDFGFDPLGLGSDPETLKWMVQ 107
Query: 97 AELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFA 156
+E+VH R+AM G AGI + L GI P WY AG +E+ F TLFIV+++ +G+A
Sbjct: 108 SEIVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAGELEY-FTDKTTLFIVEMIFIGWA 166
Query: 157 ETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNA-REWKLKE 215
E +R+ D I PG + F L G + GYPGG +PLG + +E + KE
Sbjct: 167 EGRRWADIIKPGCVNTDPIF--PNNKLTGTDVGYPGGLWFDPLGWGSGSPDKIKELRTKE 224
Query: 216 IKNGLICLV 224
IKNG + ++
Sbjct: 225 IKNGRLAML 233
>gi|398313941|emb|CCI55397.1| PSI antenna protein Lhca2 [Marchantia polymorpha]
Length = 267
Score = 164 bits (414), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 86/186 (46%), Positives = 113/186 (60%), Gaps = 4/186 (2%)
Query: 40 SGTTRRYLATVVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAEL 99
S ++ + +A +RP W PG P +LDG+L GDFGFDPLGLG +PE L+W+VQAE+
Sbjct: 45 SAVSKASFSVRAQATERPLWFPGSTAPEWLDGSLPGDFGFDPLGLGSEPELLKWFVQAEI 104
Query: 100 VHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETK 159
VH R+AM G AGI +LL GI P WY AG + FA TLFIV+LL MG+AE +
Sbjct: 105 VHCRWAMLGAAGIFIPELLTKIGILNTPSWYTAGEQTY-FADQTTLFIVELLFMGWAEGR 163
Query: 160 RYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGL-AKDIRNAREWKLKEIKN 218
R+ D + PGS + F L G + GYPGG +PLG A +E + KEIKN
Sbjct: 164 RWADILKPGSVNTDPVF--PNNKLTGTDVGYPGGFWFDPLGWGAGGAAKVKELRTKEIKN 221
Query: 219 GLICLV 224
G + ++
Sbjct: 222 GRLAML 227
>gi|115766|sp|P13869.1|CB12_PETHY RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCI type II CAB; Flags: Precursor
gi|169214|gb|AAA33711.1| chlorophyll binding protein precursor [Petunia x hybrida]
gi|226259|prf||1503272A chlorophyll binding protein
Length = 270
Score = 162 bits (410), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 85/188 (45%), Positives = 112/188 (59%), Gaps = 4/188 (2%)
Query: 38 AKSGTTRRYLATVVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQA 97
A G+ ++ V RP W PG PP +LDG+L GDFGFDPLGLG DPESL+W QA
Sbjct: 47 APVGSRSVAVSAVAADPDRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPESLKWNAQA 106
Query: 98 ELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAE 157
ELVH+R+AM G AGI + L G+ P WY AG E+ F T TLF+++L+L+G+AE
Sbjct: 107 ELVHSRWAMLGAAGIFIPEFLTKIGVLNTPSWYTAGEQEY-FTDTTTLFVIELVLIGWAE 165
Query: 158 TKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAK-DIRNAREWKLKEI 216
+R+ D I PG + F L G + GYPGG +PLG +E + KEI
Sbjct: 166 GRRWADIIKPGCVNTDPIF--PNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEI 223
Query: 217 KNGLICLV 224
KNG + ++
Sbjct: 224 KNGRLAML 231
>gi|2306981|gb|AAB65793.1| photosystem I antenna protein [Oryza sativa Indica Group]
Length = 265
Score = 162 bits (410), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 88/189 (46%), Positives = 114/189 (60%), Gaps = 5/189 (2%)
Query: 38 AKSGTTRRYLATVVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQA 97
A+S + R A A RP W PG PPP+LDG+L GDFGFDPLGLG DPESLRW VQA
Sbjct: 41 AESSSARASFAVRAAAPDRPIWFPGSTPPPWLDGSLPGDFGFDPLGLGSDPESLRWNVQA 100
Query: 98 ELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAE 157
+LVH R+AM G AGI + L GI P WY AG ++ F T TLFI++L+L+G+AE
Sbjct: 101 DLVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAGEHQY-FTDTTTLFIIELILIGWAE 159
Query: 158 TKRYMD-YISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAK-DIRNAREWKLKE 215
+R+ D I+PG + F + + G G P G L+PLG +E + KE
Sbjct: 160 GRRWADIIINPGCVNTDPIF--PQQQVHGHRRGEPCGLWLDPLGWGTVSPEKIKELRTKE 217
Query: 216 IKNGLICLV 224
IKNG + ++
Sbjct: 218 IKNGRVAML 226
>gi|449435085|ref|XP_004135326.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
[Cucumis sativus]
gi|449529174|ref|XP_004171576.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
[Cucumis sativus]
Length = 271
Score = 161 bits (408), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 84/171 (49%), Positives = 105/171 (61%), Gaps = 4/171 (2%)
Query: 55 QRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILF 114
RP W PG PPP+LDG+L GDFGFDPLGL DPESLRW QAELVH R+AM G AGI
Sbjct: 65 DRPLWFPGSTPPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFI 124
Query: 115 TDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEG 174
+ L GI P WY AG +E+ F T TLFIV+L+ +G+AE +R+ D + PG +
Sbjct: 125 PEFLTKIGILNTPSWYTAGELEY-FTDTTTLFIVELIFIGWAEGRRWADILKPGCVNTDP 183
Query: 175 SFFGLEAALEGLEPGYPGGPLLNPLGLAK-DIRNAREWKLKEIKNGLICLV 224
F L G + GYPGG +PLG +E + KEIKNG + ++
Sbjct: 184 IF--PNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAML 232
>gi|308808233|ref|XP_003081427.1| PSI-associated light-harvesting chlorophyll a/b binding protein,
(IC) [Ostreococcus tauri]
gi|63029293|gb|AAY27545.1| chloroplast light-harvesting complex I protein precursor Lhca2
[Ostreococcus tauri]
gi|116059889|emb|CAL55596.1| PSI-associated light-harvesting chlorophyll a/b binding protein,
(IC) [Ostreococcus tauri]
Length = 242
Score = 160 bits (406), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 88/193 (45%), Positives = 119/193 (61%), Gaps = 7/193 (3%)
Query: 36 LPAKSGTTRRYLATVVRAQQ----RPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESL 91
L A++ TTR +VV + + RP W PG P P+LDG+L GDFGFDPL L DPE
Sbjct: 15 LKARATTTRASRRSVVVSAEAGAERPVWYPGKAPAPHLDGSLPGDFGFDPLSLSADPEMR 74
Query: 92 RWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLL 151
+W VQAEL HAR+AM GVAG + +LL G+ +LP W +AG ++ +A LF +Q+
Sbjct: 75 KWMVQAELQHARWAMLGVAGAVAPELLTKIGVADLPNWVDAGTYQY-WAPAGPLFFIQMA 133
Query: 152 LMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREW 211
+ +AE +R+ D +PGS + FG + + GYPGG L + LG AKD A+E
Sbjct: 134 MFNWAEVRRWQDMKNPGSMNTD-PLFGYNSNDTNTDVGYPGG-LFDKLGYAKDPAKAKEL 191
Query: 212 KLKEIKNGLICLV 224
KLKEIKNG + +V
Sbjct: 192 KLKEIKNGRLAMV 204
>gi|413922346|gb|AFW62278.1| chlorophyll a-b binding protein 4 [Zea mays]
Length = 244
Score = 160 bits (405), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 95/214 (44%), Positives = 133/214 (62%), Gaps = 20/214 (9%)
Query: 11 LQPSSSSSFICNDVNKSSIGITSAFLPAKSGTTRRYLATVVRAQQRPTWLPGVDPPPYLD 70
L+PSSSS+F+ + S +G T A + TRR L +A+ + WLPG+ P YLD
Sbjct: 13 LRPSSSSAFLGH---SSRLGRT-----ATASPTRRSL----KAEAKGEWLPGLPSPAYLD 60
Query: 71 GTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWY 130
G+L GD GFDPLGL EDPE+LRWYVQAELV+ R+AM GVAG+L ++L G+ P WY
Sbjct: 61 GSLPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVAGMLIPEVLTKAGLINAPQWY 120
Query: 131 EAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGY 190
+AG E+ FAS+ TLF+++ +L + E +R+ D +PGS ++ F +L E GY
Sbjct: 121 DAGKSEY-FASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKSY--SLPPHECGY 177
Query: 191 PGGPLLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
PG + NPL A + E K KE+ NG + ++
Sbjct: 178 PGS-VFNPLNFAPTL----EAKEKELANGRLAML 206
>gi|413922348|gb|AFW62280.1| hypothetical protein ZEAMMB73_290736 [Zea mays]
Length = 224
Score = 160 bits (405), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 97/215 (45%), Positives = 133/215 (61%), Gaps = 21/215 (9%)
Query: 11 LQPSSSSSFICNDVNKSSIGITSAFLPAKSGTTRRYLATVVRAQQRPTWLPGVDPPPYLD 70
L+PSSSS+F+ + S +G T A + TRR L +A+ + WLPG+ P YLD
Sbjct: 13 LRPSSSSAFLGHS---SRLGRT-----ATASPTRRSL----KAEAKGEWLPGLPSPAYLD 60
Query: 71 GTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWY 130
G+L GD GFDPLGL EDPE+LRWYVQAELV+ R+AM GVAG+L ++L G+ P WY
Sbjct: 61 GSLPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVAGMLIPEVLTKAGLINAPQWY 120
Query: 131 EAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGY 190
+AG E+ FAS+ TLF+++ +L + E +R+ D +PGS ++ F +L E GY
Sbjct: 121 DAGKSEY-FASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKSY--SLPPHECGY 177
Query: 191 PGGPLLNPLGLAKDIRNAREWKLKEIKNG-LICLV 224
PG + NPL A + E K KE+ NG L C+
Sbjct: 178 PGS-VFNPLNFAPTL----EAKEKELANGELHCIA 207
>gi|226504520|ref|NP_001147224.1| chlorophyll a-b binding protein [Zea mays]
gi|195608716|gb|ACG26188.1| chlorophyll a-b binding protein [Zea mays]
Length = 256
Score = 159 bits (403), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 83/171 (48%), Positives = 106/171 (61%), Gaps = 4/171 (2%)
Query: 55 QRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILF 114
+RP W PG PP +LDG+L GDFGFDPLGL DPESL+W VQAE+VH R+AM G AGI
Sbjct: 50 ERPIWFPGSTPPEWLDGSLPGDFGFDPLGLSSDPESLKWNVQAEIVHCRWAMLGAAGIFI 109
Query: 115 TDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEG 174
+ L GI P WY AG E+ F TLF+V+L+L+G+AE +R+ D I PGS +
Sbjct: 110 PEFLTKIGILNTPSWYTAGEQEY-FTDKTTLFVVELILIGWAEGRRWADIIKPGSVNTDP 168
Query: 175 SFFGLEAALEGLEPGYPGGPLLNPLGLAK-DIRNAREWKLKEIKNGLICLV 224
F L G + GYPGG +PLG +E + KEIKNG + ++
Sbjct: 169 IF--PNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAML 217
>gi|159480898|ref|XP_001698519.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
gi|158282259|gb|EDP08012.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
Length = 262
Score = 159 bits (402), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 96/229 (41%), Positives = 134/229 (58%), Gaps = 20/229 (8%)
Query: 9 FLLQPSSSSSFICNDVNK-SSIGITSAFLPAKSGTTRRYLAT-------VVRAQQRPTWL 60
F+L SS+ V++ SS+ + ++ +P R ++ R P+W+
Sbjct: 3 FVLAKSSAFGVAAKPVSRRSSVAVKASAVPENVKEAREWIDAWKSKSGGAKRDAALPSWM 62
Query: 61 PGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRV 120
PG D P YL+GTL GDFGFDPL LG+DP L+WY QAEL++ARFAM VAGIL +LL
Sbjct: 63 PGADLPGYLNGTLPGDFGFDPLYLGQDPVKLKWYAQAELMNARFAMLAVAGILVPELLSN 122
Query: 121 TGIRELP----VWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSF 176
G P WY+AG E+ FA +LF VQ+LL + E +RY D++ PGS ++
Sbjct: 123 IGF-SWPGAGVAWYDAGKFEY-FAPASSLFGVQMLLFAWVEIRRYQDFVKPGSANQD-PI 179
Query: 177 FGLEAALEGLEPGYPGGPLLNPLGLAK-DIRNAREWKLKEIKNGLICLV 224
F +G EPGYPGG + +P G +K DI++ KLKEIKNG + ++
Sbjct: 180 FTNNKLPDGNEPGYPGG-IFDPFGWSKGDIKSL---KLKEIKNGRLAML 224
>gi|40714509|dbj|BAD06918.1| light-harvesting chlorophyll-a/b protein of photosystem I
[Chlamydomonas reinhardtii]
Length = 264
Score = 159 bits (402), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 96/229 (41%), Positives = 134/229 (58%), Gaps = 20/229 (8%)
Query: 9 FLLQPSSSSSFICNDVNK-SSIGITSAFLPAKSGTTRRYLAT-------VVRAQQRPTWL 60
F+L SS+ V++ SS+ + ++ +P R ++ R P+W+
Sbjct: 3 FVLAKSSAFGVAAKPVSRRSSVAVKASAVPENVKEAREWIDAWKSKSGGAKRDAALPSWM 62
Query: 61 PGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRV 120
PG D P YL+GTL GDFGFDPL LG+DP L+WY QAEL++ARFAM VAGIL +LL
Sbjct: 63 PGADLPGYLNGTLPGDFGFDPLYLGQDPVKLKWYAQAELMNARFAMLAVAGILVPELLSN 122
Query: 121 TGIRELP----VWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSF 176
G P WY+AG E+ FA +LF VQ+LL + E +RY D++ PGS ++
Sbjct: 123 IGF-SWPGAGVAWYDAGKFEY-FAPASSLFGVQMLLFAWVEIRRYQDFVKPGSANQD-PI 179
Query: 177 FGLEAALEGLEPGYPGGPLLNPLGLAK-DIRNAREWKLKEIKNGLICLV 224
F +G EPGYPGG + +P G +K DI++ KLKEIKNG + ++
Sbjct: 180 FTNNKLPDGNEPGYPGG-IFDPFGWSKGDIKSL---KLKEIKNGRLAML 224
>gi|297817464|ref|XP_002876615.1| Lhca2 protein [Arabidopsis lyrata subsp. lyrata]
gi|297322453|gb|EFH52874.1| Lhca2 protein [Arabidopsis lyrata subsp. lyrata]
Length = 257
Score = 159 bits (402), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 84/176 (47%), Positives = 106/176 (60%), Gaps = 4/176 (2%)
Query: 50 VVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGV 109
V RP W PG PP +LDG+L GDFGFDPLGL DP+SL+W VQAELVH R+AM G
Sbjct: 46 VAADPDRPIWFPGSTPPEWLDGSLPGDFGFDPLGLSSDPDSLKWNVQAELVHCRWAMLGA 105
Query: 110 AGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGS 169
AGI + L GI P WY AG E+ F TLF+V+L+L+G+AE +R+ D I PGS
Sbjct: 106 AGIFIPEFLTKIGILNTPSWYTAGEQEY-FTDKTTLFVVELILIGWAEGRRWADIIKPGS 164
Query: 170 QTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAK-DIRNAREWKLKEIKNGLICLV 224
+ F L G + GYPGG +PLG +E + KEIKNG + ++
Sbjct: 165 VNTDPVF--PNNKLTGTDVGYPGGLWFDPLGWGSGSPAKLKELRTKEIKNGRLAML 218
>gi|412990451|emb|CCO19769.1| unknown [Bathycoccus prasinos]
Length = 241
Score = 159 bits (401), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 83/186 (44%), Positives = 117/186 (62%), Gaps = 4/186 (2%)
Query: 40 SGTTRRYLATVV-RAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAE 98
S T R ++V+ A+ RP W+PG P +L G L GD+GFDPL LGED + L WYVQAE
Sbjct: 19 SATKRTVRSSVIASAESRPLWMPGTAAPSHLKGMLPGDYGFDPLNLGEDSKDLDWYVQAE 78
Query: 99 LVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAET 158
L HAR+AM GVAG+ +LL + G+ +LP W++A FAS+ TLF VQ+ +M +AE
Sbjct: 79 LQHARWAMLGVAGMAAPELLTMFGVSDLPNWHDAPFYNGYFASSTTLFTVQMFMMNWAEI 138
Query: 159 KRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKN 218
+R+ D +PGS +++ +F G + L + GYPGG + NP+ K + K KEI N
Sbjct: 139 RRWQDIKNPGSVSEDPAFPGNK--LPAGDVGYPGG-IFNPMNYGKSTDELKALKAKEIAN 195
Query: 219 GLICLV 224
G + +V
Sbjct: 196 GRLAMV 201
>gi|312283035|dbj|BAJ34383.1| unnamed protein product [Thellungiella halophila]
Length = 256
Score = 159 bits (401), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 86/182 (47%), Positives = 110/182 (60%), Gaps = 8/182 (4%)
Query: 48 ATVVRA----QQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHAR 103
A +VRA +RP W PG PP +LDG+L GDFGFDPLGL DP+SL+W QAELVH R
Sbjct: 39 AALVRAVAADPERPIWFPGSTPPEWLDGSLPGDFGFDPLGLSSDPDSLKWNAQAELVHCR 98
Query: 104 FAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMD 163
+AM G AGI + L GI P WY AG E+ F TLF+V+L+L+G+AE +R+ D
Sbjct: 99 WAMLGAAGIFIPEFLTKIGILNTPSWYTAGEQEY-FTDKTTLFVVELILIGWAEGRRWAD 157
Query: 164 YISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAK-DIRNAREWKLKEIKNGLIC 222
I PGS + F L G + GYPGG +PLG +E + KEIKNG +
Sbjct: 158 IIKPGSVNTDPIF--PNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLA 215
Query: 223 LV 224
++
Sbjct: 216 ML 217
>gi|6850838|emb|CAB71077.1| Lhca2 protein [Arabidopsis thaliana]
Length = 257
Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 83/176 (47%), Positives = 106/176 (60%), Gaps = 4/176 (2%)
Query: 50 VVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGV 109
V RP W PG PP +LDG+L GDFGFDPLGL DP+SL+W VQAE+VH R+AM G
Sbjct: 46 VAADPDRPIWFPGSTPPEWLDGSLPGDFGFDPLGLSSDPDSLKWNVQAEIVHCRWAMLGA 105
Query: 110 AGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGS 169
AGI + L GI P WY AG E+ F TLF+V+L+L+G+AE +R+ D I PGS
Sbjct: 106 AGIFIPEFLTKIGILNTPSWYTAGEQEY-FTDKTTLFVVELILIGWAEGRRWADIIKPGS 164
Query: 170 QTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAK-DIRNAREWKLKEIKNGLICLV 224
+ F L G + GYPGG +PLG +E + KEIKNG + ++
Sbjct: 165 VNTDPVF--PNNKLTGTDVGYPGGLWFDPLGWGSGSPAKLKELRTKEIKNGRLAML 218
>gi|145688411|gb|ABO71660.2| LhCa2 protein [Brassica juncea]
Length = 256
Score = 158 bits (399), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 82/171 (47%), Positives = 106/171 (61%), Gaps = 4/171 (2%)
Query: 55 QRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILF 114
+RP W PG PP +LDG+L GDFGFDPLGL DP+SL+W VQAE+VH R+AM G AGI
Sbjct: 50 ERPIWFPGSTPPEWLDGSLPGDFGFDPLGLSSDPDSLKWNVQAEIVHCRWAMLGAAGIFI 109
Query: 115 TDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEG 174
+ L GI P WY AG E+ F TLF+V+L+L+G+AE +R+ D I PGS +
Sbjct: 110 PEFLTKIGILNTPSWYTAGEQEY-FTDKTTLFVVELILIGWAEGRRWADIIKPGSVNTDP 168
Query: 175 SFFGLEAALEGLEPGYPGGPLLNPLGLAK-DIRNAREWKLKEIKNGLICLV 224
F L G + GYPGG +PLG +E + KEIKNG + ++
Sbjct: 169 IF--PNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLTML 217
>gi|186511289|ref|NP_191706.2| photosystem I light harvesting complex protein [Arabidopsis
thaliana]
gi|4741940|gb|AAD28767.1|AF134120_1 Lhca2 protein [Arabidopsis thaliana]
gi|15451180|gb|AAK96861.1| Lhca2 protein [Arabidopsis thaliana]
gi|17529286|gb|AAL38870.1| putative Lhca2 protein [Arabidopsis thaliana]
gi|18377464|gb|AAL66898.1| Lhca2 protein [Arabidopsis thaliana]
gi|25083456|gb|AAN72081.1| Lhca2 protein [Arabidopsis thaliana]
gi|332646688|gb|AEE80209.1| photosystem I light harvesting complex protein [Arabidopsis
thaliana]
Length = 257
Score = 158 bits (399), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 83/176 (47%), Positives = 106/176 (60%), Gaps = 4/176 (2%)
Query: 50 VVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGV 109
V RP W PG PP +LDG+L GDFGFDPLGL DP+SL+W VQAE+VH R+AM G
Sbjct: 46 VAADPDRPIWFPGSTPPEWLDGSLPGDFGFDPLGLSSDPDSLKWNVQAEIVHCRWAMLGA 105
Query: 110 AGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGS 169
AGI + L GI P WY AG E+ F TLF+V+L+L+G+AE +R+ D I PGS
Sbjct: 106 AGIFIPEFLTKIGILNTPSWYTAGEQEY-FTDKTTLFVVELILIGWAEGRRWADIIKPGS 164
Query: 170 QTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAK-DIRNAREWKLKEIKNGLICLV 224
+ F L G + GYPGG +PLG +E + KEIKNG + ++
Sbjct: 165 VNTDPVF--PNNKLTGTDVGYPGGLWFDPLGWGSGSPAKLKELRTKEIKNGRLAML 218
>gi|302831910|ref|XP_002947520.1| light harvesting complex A [Volvox carteri f. nagariensis]
gi|300267384|gb|EFJ51568.1| light harvesting complex A [Volvox carteri f. nagariensis]
Length = 264
Score = 158 bits (399), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 94/228 (41%), Positives = 130/228 (57%), Gaps = 18/228 (7%)
Query: 9 FLLQPSSSSSFICNDVNK-SSIGITSAFLPAKSGTTRRYLAT-------VVRAQQRPTWL 60
F+L SS+ V++ SS+ + ++ +P R ++ R P+W+
Sbjct: 3 FVLSKSSAFGVAAKPVSRRSSVAVKASAVPENVKEARAWIDAWKSKQGGAKRDPSLPSWM 62
Query: 61 PGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRV 120
PG P YLDGTL GDFGFDPL LG +P L+WY QAELVHARFAM VAGIL +LL
Sbjct: 63 PGATLPGYLDGTLPGDFGFDPLYLGAEPSKLKWYAQAELVHARFAMLAVAGILVPELLTN 122
Query: 121 TGIRELP----VWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSF 176
G P WY+AG ++ FA +LF VQ+LL +AE +RY D++ PGS ++
Sbjct: 123 IGF-SWPGAGVAWYDAGKFQY-FAPASSLFGVQMLLFAWAELRRYQDFVKPGSANQD-PI 179
Query: 177 FGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
F +G EPGYPGG + +P G +K + + K KEIKNG + ++
Sbjct: 180 FSNNKLPDGNEPGYPGG-IFDPFGWSKG--DMKSLKTKEIKNGRLAML 224
>gi|384247027|gb|EIE20515.1| light harvesting complex a protein [Coccomyxa subellipsoidea C-169]
Length = 255
Score = 158 bits (399), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 88/170 (51%), Positives = 110/170 (64%), Gaps = 6/170 (3%)
Query: 58 TWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDL 117
WLPG P YL+ L G +GFDPL LGEDP SL+WYVQ+ELVH+RFAMA VAGIL ++
Sbjct: 37 NWLPGSKTPAYLE-DLPGSYGFDPLKLGEDPASLKWYVQSELVHSRFAMAAVAGILIPEV 95
Query: 118 LRVTGIRELPVWYEAG--AVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGS 175
L+ G LPVWYEAG A E TL +++ F E KR+ D+ PGSQ +EGS
Sbjct: 96 LKAFGAVNLPVWYEAGKYAQESSPIPFNTLIALEIFAFNFVEIKRWQDFKKPGSQGEEGS 155
Query: 176 FFGLEAALEGL-EPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
F GLE +G E GYPGG + +PLGL+K KL+EIKNG + ++
Sbjct: 156 FVGLEGFFKGTGENGYPGG-VFDPLGLSKG-PGYEAMKLREIKNGRLAML 203
>gi|413922347|gb|AFW62279.1| hypothetical protein ZEAMMB73_290736 [Zea mays]
Length = 242
Score = 157 bits (398), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 94/209 (44%), Positives = 129/209 (61%), Gaps = 20/209 (9%)
Query: 11 LQPSSSSSFICNDVNKSSIGITSAFLPAKSGTTRRYLATVVRAQQRPTWLPGVDPPPYLD 70
L+PSSSS+F+ + S +G T+ P TRR L +A+ + WLPG+ P YLD
Sbjct: 13 LRPSSSSAFLGHS---SRLGRTATASP-----TRRSL----KAEAKGEWLPGLPSPAYLD 60
Query: 71 GTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWY 130
G+L GD GFDPLGL EDPE+LRWYVQAELV+ R+AM GVAG+L ++L G+ P WY
Sbjct: 61 GSLPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVAGMLIPEVLTKAGLINAPQWY 120
Query: 131 EAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGY 190
+AG E+ FAS+ TLF+++ +L + E +R+ D +PGS ++ F +L E GY
Sbjct: 121 DAGKSEY-FASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKSY--SLPPHECGY 177
Query: 191 PGGPLLNPLGLAKDIRNAREWKLKEIKNG 219
PG + NPL A + E K KE+ N
Sbjct: 178 PGS-VFNPLNFAPTL----EAKEKELANA 201
>gi|302806497|ref|XP_002984998.1| light-harvesting complex [Selaginella moellendorffii]
gi|300147208|gb|EFJ13873.1| light-harvesting complex [Selaginella moellendorffii]
Length = 268
Score = 157 bits (397), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 80/180 (44%), Positives = 109/180 (60%), Gaps = 4/180 (2%)
Query: 46 YLATVVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFA 105
+ T A +RP W PG PP +LDG+L DFGFDPLGLG +PE L+W+VQ+E+VH+R+A
Sbjct: 53 FSVTAAAATERPLWFPGSTPPAWLDGSLPADFGFDPLGLGSEPELLKWFVQSEIVHSRWA 112
Query: 106 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 165
M G AGI + L GI P WY AG E+ F TLFIV+++L+G+AE +R+ D +
Sbjct: 113 MLGAAGIFIPEALTKLGILNTPFWYTAGEQEY-FTDQTTLFIVEMILLGWAEGRRWADIL 171
Query: 166 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGL-AKDIRNAREWKLKEIKNGLICLV 224
PGS + F L G + GYPGG +P G +E + KEIKNG + ++
Sbjct: 172 KPGSVNTDPVF--PNNKLTGTDVGYPGGFWFDPFGWGTASPEKLKELRTKEIKNGRLAML 229
>gi|302808989|ref|XP_002986188.1| light-harvesting complex [Selaginella moellendorffii]
gi|300146047|gb|EFJ12719.1| light-harvesting complex [Selaginella moellendorffii]
Length = 268
Score = 157 bits (397), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 80/180 (44%), Positives = 109/180 (60%), Gaps = 4/180 (2%)
Query: 46 YLATVVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFA 105
+ T A +RP W PG PP +LDG+L DFGFDPLGLG +PE L+W+VQ+E+VH+R+A
Sbjct: 53 FSVTAAAATERPLWFPGSTPPAWLDGSLPADFGFDPLGLGSEPELLKWFVQSEIVHSRWA 112
Query: 106 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 165
M G AGI + L GI P WY AG E+ F TLFIV+++L+G+AE +R+ D +
Sbjct: 113 MLGAAGIFIPEALTKLGILNTPFWYTAGEQEY-FTDQTTLFIVEMILLGWAEGRRWADIL 171
Query: 166 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAK-DIRNAREWKLKEIKNGLICLV 224
PGS + F L G + GYPGG +P G +E + KEIKNG + ++
Sbjct: 172 KPGSVNTDPVF--PNNKLTGTDVGYPGGFWFDPFGWGTASPEKLKELRTKEIKNGRLAML 229
>gi|307109464|gb|EFN57702.1| hypothetical protein CHLNCDRAFT_59626 [Chlorella variabilis]
Length = 249
Score = 157 bits (396), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 87/185 (47%), Positives = 113/185 (61%), Gaps = 6/185 (3%)
Query: 45 RYLATVVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARF 104
R A VV A RP W PGV PP +LDGTL GDFGFDPL LG + E+L WY AEL + R+
Sbjct: 22 RRSAVVVYAASRPLWQPGVTPPAHLDGTLPGDFGFDPLNLGVNKEALDWYRNAELQNGRW 81
Query: 105 AMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFAST---RTLFIVQLLLMGFAETKRY 161
AM GVAGI+F L G+ +P W +AG V + + +L +VQ L F E KR+
Sbjct: 82 AMLGVAGIIFPAELTRVGLLNVPDWADAGKVYAESENAIPFASLLMVQFFLFNFVEIKRW 141
Query: 162 MDYISPGSQTKEGSFFGLEAALEGLE-PGYPGGPLLNPLGLAKDIRNA-REWKLKEIKNG 219
D PGSQ + GSF G E+A +G GYPGGP NPLGL + + ++K +EI+NG
Sbjct: 142 EDIKKPGSQAEAGSFLGFESAFKGSGVSGYPGGP-FNPLGLGNSSKESMDDFKWREIRNG 200
Query: 220 LICLV 224
+ ++
Sbjct: 201 RLAMM 205
>gi|87313213|gb|ABD37903.1| light-harvesting chlorophyll-a/b binding protein Lhca1
[Chlamydomonas incerta]
Length = 233
Score = 157 bits (396), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 91/211 (43%), Positives = 126/211 (59%), Gaps = 19/211 (9%)
Query: 26 KSSIGITSAFLPAKSGTTRRYLAT-------VVRAQQRPTWLPGVDPPPYLDGTLAGDFG 78
+SS+ + ++ +P R ++ R P+W+PG D P YL+GTL GDFG
Sbjct: 7 RSSVAVKASAVPENVKEAREWIDAWKSKSGGAKRDAALPSWMPGADLPGYLNGTLPGDFG 66
Query: 79 FDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELP----VWYEAGA 134
FDPL LG+DP L+WY QAEL++ARFAM VAGIL +LL G P WY+AG
Sbjct: 67 FDPLYLGQDPVKLKWYAQAELMNARFAMLAVAGILVPELLSNIGF-SWPGAGVAWYDAGK 125
Query: 135 VEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGP 194
E+ FA +LF VQ+LL + E +RY D++ PGS ++ F +G EPGYPGG
Sbjct: 126 FEY-FAPASSLFGVQMLLFAWVEIRRYQDFVKPGSANQD-PIFTNNKLPDGNEPGYPGG- 182
Query: 195 LLNPLGLAK-DIRNAREWKLKEIKNGLICLV 224
+ +P G +K DI++ KLKEIKNG + ++
Sbjct: 183 IFDPFGWSKGDIKSL---KLKEIKNGRLAML 210
>gi|255085312|ref|XP_002505087.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas sp. RCC299]
gi|226520356|gb|ACO66345.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas sp. RCC299]
Length = 242
Score = 155 bits (393), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 88/201 (43%), Positives = 120/201 (59%), Gaps = 11/201 (5%)
Query: 33 SAFLPAKSGTTR-RYLATVVRAQ--------QRPTWLPGVDPPPYLDGTLAGDFGFDPLG 83
+A L KS T R R +A+ RA RPTWLPG P +LDGTL D+GFDPL
Sbjct: 10 AAGLTQKSRTVRPRGVASKARASVRVGAVAAARPTWLPGSPAPAHLDGTLPCDYGFDPLN 69
Query: 84 LGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTR 143
LG DPE+L+W+VQAEL+H R+AM G+AG++ +LL G+ +LP W +AG + +
Sbjct: 70 LGADPENLKWFVQAELMHCRWAMLGLAGMVGPELLTKIGMADLPNWIDAGKWDGYWLGAG 129
Query: 144 TLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAK 203
LF VQ+ +M +AE +R+ D +PG+ E G + GYP G L +P+G AK
Sbjct: 130 PLFFVQMAMMNWAEVRRWQDMKAPGTMN-EDPLTGANKGDTNTDVGYPKG-LFDPMGYAK 187
Query: 204 DIRNAREWKLKEIKNGLICLV 224
D + A E K KEI NG + +V
Sbjct: 188 DPKKAEELKRKEIANGRLAMV 208
>gi|303274210|ref|XP_003056428.1| chlorophyll a/b-binding protein, chloroplast precursor [Micromonas
pusilla CCMP1545]
gi|226462512|gb|EEH59804.1| chlorophyll a/b-binding protein, chloroplast precursor [Micromonas
pusilla CCMP1545]
Length = 250
Score = 154 bits (389), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 80/175 (45%), Positives = 109/175 (62%), Gaps = 3/175 (1%)
Query: 51 VRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVA 110
V A RP + PG PP +LDGT+AGD+GFDPLGLGED +L+WY QAELVHAR+AM GVA
Sbjct: 37 VSAAARPNFFPGSTPPKHLDGTMAGDYGFDPLGLGEDKVALQWYQQAELVHARWAMLGVA 96
Query: 111 GILFTDLLRVTGIR-ELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGS 169
G+ +L+ + LP W EA + A TLF+VQ+ M +AE +R+ D +PGS
Sbjct: 97 GMAAPELVGNPFVDGPLPNWAEAPFFDGYIADANTLFVVQMFFMNWAEVRRWQDMKNPGS 156
Query: 170 QTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
+ + G + GYPGG L NP+G+AK + + + + KEI NG + +V
Sbjct: 157 VHADP--YDENRKCTGSDVGYPGGGLFNPMGMAKSVADEKALRAKEIANGRLAMV 209
>gi|308800788|ref|XP_003075175.1| PSI-associated light-harvesting chlorophyll a/b binding protein
(IC) [Ostreococcus tauri]
gi|63029283|gb|AAY27540.1| chloroplast light-harvesting complex I protein precursor Lhca4
[Ostreococcus tauri]
gi|116061729|emb|CAL52447.1| PSI-associated light-harvesting chlorophyll a/b binding protein
(IC) [Ostreococcus tauri]
Length = 236
Score = 154 bits (389), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 85/189 (44%), Positives = 114/189 (60%), Gaps = 5/189 (2%)
Query: 36 LPAKSGTTRRYLATVVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYV 95
L A T R + VRA +P W PG+D P +L G L GD+GFDPL LG++P+ L WYV
Sbjct: 13 LRAPKTTKRSQRSVSVRASTQPMWFPGMDAPQHLKGELPGDYGFDPLNLGKEPKDLEWYV 72
Query: 96 QAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGF 155
QAEL H R+AM GVAG ++L GI +LP W++A + F TLF VQ+L+M +
Sbjct: 73 QAELQHGRWAMLGVAGAAAPEILTKMGISDLPNWHDAPNYQGYFTDATTLFWVQMLMMNW 132
Query: 156 AETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKE 215
AE +R+ D PGS ++ +F G + L GYPGG + +PLG AK N + K KE
Sbjct: 133 AEVRRWQDMRKPGSVNEDPAFSGNK--LPSGIVGYPGG-IFDPLGYAKGDLN--KLKAKE 187
Query: 216 IKNGLICLV 224
I NG + +V
Sbjct: 188 IANGRLAMV 196
>gi|168060917|ref|XP_001782439.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162666110|gb|EDQ52774.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 210
Score = 153 bits (387), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 80/172 (46%), Positives = 106/172 (61%), Gaps = 5/172 (2%)
Query: 55 QRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILF 114
RP W PG P +LDG+L GDFGFDPLGLG DPE L+W+VQAELVH R+AM G AGI
Sbjct: 1 DRPLWFPGSKAPEWLDGSLPGDFGFDPLGLGSDPELLKWFVQAELVHCRWAMLGAAGIFI 60
Query: 115 TDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEG 174
+ L GI P W AG ++ FA TLF+++L+L +AE +R+ D ++PG +
Sbjct: 61 PEALTKAGILNTPSWNVAGDQQY-FADPTTLFVIELILFAWAEGRRWADIVNPGCVNVDP 119
Query: 175 SFFGLEAALEGLEPGYPGGPLLNPLGLA--KDIRNAREWKLKEIKNGLICLV 224
F L G + GYPGG +PLG KD + +E + KEIKNG + ++
Sbjct: 120 VF--PNNKLTGTDVGYPGGLWFDPLGWGQTKDAKKLKELRTKEIKNGRLAML 169
>gi|326523021|dbj|BAJ88556.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 270
Score = 153 bits (386), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 86/192 (44%), Positives = 115/192 (59%), Gaps = 12/192 (6%)
Query: 39 KSGTTRRYLATVVR--AQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQ 96
++G T+ L+TV RP W PG PPP+LDG+L GDFGFDPLG G +PESLRW+ Q
Sbjct: 46 RTGATKSSLSTVCEPLGPDRPVWFPGTAPPPWLDGSLPGDFGFDPLGFGSEPESLRWFAQ 105
Query: 97 AELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFA 156
AEL+H R+AM VAGIL ++L+ G E WY AG E+ FA TLF+ Q+ LMG+
Sbjct: 106 AELMHGRWAMLAVAGILIPEILQKWGFMEEFSWYTAGEREY-FADPWTLFVTQMALMGWV 164
Query: 157 ETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE----WK 212
E +R+MDY++PGS E F + + GYPGG + R + E +
Sbjct: 165 EGRRWMDYLNPGSVDIEPRFPNRKNPTPDV--GYPGGLWFD---WGNWGRGSPEPVMVLR 219
Query: 213 LKEIKNGLICLV 224
KEIKNG + ++
Sbjct: 220 TKEIKNGRLAML 231
>gi|326489913|dbj|BAJ94030.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 273
Score = 153 bits (386), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 86/192 (44%), Positives = 115/192 (59%), Gaps = 12/192 (6%)
Query: 39 KSGTTRRYLATVVR--AQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQ 96
++G T+ L+TV RP W PG PPP+LDG+L GDFGFDPLG G +PESLRW+ Q
Sbjct: 49 RTGATKSSLSTVCEPLGPDRPVWFPGTAPPPWLDGSLPGDFGFDPLGFGSEPESLRWFAQ 108
Query: 97 AELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFA 156
AEL+H R+AM VAGIL ++L+ G E WY AG E+ FA TLF+ Q+ LMG+
Sbjct: 109 AELMHGRWAMLAVAGILIPEILQKWGFMEEFSWYTAGEREY-FADPWTLFVTQMALMGWV 167
Query: 157 ETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE----WK 212
E +R+MDY++PGS E F + + GYPGG + R + E +
Sbjct: 168 EGRRWMDYLNPGSVDIEPRFPNRKNPTPDV--GYPGGLWFD---WGNWGRGSPEPVMVLR 222
Query: 213 LKEIKNGLICLV 224
KEIKNG + ++
Sbjct: 223 TKEIKNGRLAML 234
>gi|326508082|dbj|BAJ86784.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326526845|dbj|BAK00811.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 273
Score = 153 bits (386), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 86/192 (44%), Positives = 115/192 (59%), Gaps = 12/192 (6%)
Query: 39 KSGTTRRYLATVVR--AQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQ 96
++G T+ L+TV RP W PG PPP+LDG+L GDFGFDPLG G +PESLRW+ Q
Sbjct: 49 RTGATKSSLSTVCEPLGPDRPVWFPGTAPPPWLDGSLPGDFGFDPLGFGSEPESLRWFAQ 108
Query: 97 AELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFA 156
AEL+H R+AM VAGIL ++L+ G E WY AG E+ FA TLF+ Q+ LMG+
Sbjct: 109 AELMHGRWAMLAVAGILIPEILQKWGFMEEFSWYTAGEREY-FADPWTLFVTQMALMGWV 167
Query: 157 ETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE----WK 212
E +R+MDY++PGS E F + + GYPGG + R + E +
Sbjct: 168 EGRRWMDYLNPGSVDIEPRFPNRKNPTPDV--GYPGGLWFD---WGNWGRGSPEPVMVLR 222
Query: 213 LKEIKNGLICLV 224
KEIKNG + ++
Sbjct: 223 TKEIKNGRLAML 234
>gi|195617028|gb|ACG30344.1| chlorophyll a-b binding protein 4 [Zea mays]
Length = 252
Score = 153 bits (386), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 85/187 (45%), Positives = 118/187 (63%), Gaps = 12/187 (6%)
Query: 38 AKSGTTRRYLATVVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQA 97
A + TRR L +A+ + WLPG+ P YLDG+L GD GFDPLGL EDPE+LRWYVQA
Sbjct: 40 ATASPTRRSL----KAEAKGEWLPGLPSPAYLDGSLPGDNGFDPLGLAEDPENLRWYVQA 95
Query: 98 ELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAE 157
ELV+ R+AM GVAG+L ++L G+ P WY+AG E+ FAS+ TLF+++ +L + E
Sbjct: 96 ELVNGRWAMLGVAGMLIPEVLTKAGLINAPQWYDAGKSEY-FASSSTLFVIEFILFHYVE 154
Query: 158 TKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIK 217
+R+ D +PGS ++ F +L E GYPG + NPL A + E K KE+
Sbjct: 155 IRRWQDIKNPGSVNQDPIFKSY--SLPPHECGYPGS-VFNPLNFAPTL----EAKEKELA 207
Query: 218 NGLICLV 224
NG + ++
Sbjct: 208 NGRLAML 214
>gi|225457389|ref|XP_002284856.1| PREDICTED: chlorophyll a-b binding protein 4, chloroplastic [Vitis
vinifera]
gi|147843386|emb|CAN79984.1| hypothetical protein VITISV_038035 [Vitis vinifera]
Length = 252
Score = 153 bits (386), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 87/211 (41%), Positives = 124/211 (58%), Gaps = 14/211 (6%)
Query: 14 SSSSSFICNDVNKSSIGITSAFLPAKSGTTRRYLATVVRAQQRPTWLPGVDPPPYLDGTL 73
+S S F+ K +G + P S + R + + + WLPG+ P YLDG+L
Sbjct: 17 ASKSRFLTGSSGK--LGREVSVKPMTSSSYRSFKVEAKKGE----WLPGLSSPSYLDGSL 70
Query: 74 AGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAG 133
GD GFDPLGL EDPE+L+WYVQAELV++R+AM GVAG+L ++ GI P WY+AG
Sbjct: 71 PGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVAGMLLPEVFTKIGIINAPQWYDAG 130
Query: 134 AVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGG 193
E+ FAS+ TLF+++ +L + E +R+ D +PGS ++ F +L E GYPGG
Sbjct: 131 KAEY-FASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIF--KNYSLPPNEVGYPGG 187
Query: 194 PLLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
+ NPL A E K KE+ NG + ++
Sbjct: 188 -IFNPLNFAP----TEEAKEKELANGRLAML 213
>gi|412990668|emb|CCO18040.1| unknown [Bathycoccus prasinos]
Length = 227
Score = 152 bits (385), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 87/194 (44%), Positives = 117/194 (60%), Gaps = 9/194 (4%)
Query: 31 ITSAFLPAKSGTTRRYLATVVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPES 90
+ ++ L ++S + + A+ V QR W PGVD P +LDG+L GDFGFDPLGL DPE
Sbjct: 9 VNTSALKSRSVSRQSARASFVVKAQRDVWWPGVDAPAHLDGSLPGDFGFDPLGLSVDPEM 68
Query: 91 LRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQL 150
+W VQAEL HAR+AM GVAG++ DL + P W EAG E+ +A LF +Q+
Sbjct: 69 KKWMVQAELQHARWAMLGVAGMVGPDL----APWDTPSWIEAGKFEY-WAPAGPLFFIQM 123
Query: 151 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 210
+M +AE +R+ D PGS K+ FG A + GYPGG L + LG AK ++
Sbjct: 124 AMMNWAEVRRWQDMKDPGSMNKD-PLFGYNANDTNTDVGYPGG-LFDKLGYAK--KDLDT 179
Query: 211 WKLKEIKNGLICLV 224
KLKEIKNG + +V
Sbjct: 180 LKLKEIKNGRLAMV 193
>gi|194703906|gb|ACF86037.1| unknown [Zea mays]
gi|195613086|gb|ACG28373.1| chlorophyll a-b binding protein 4 [Zea mays]
gi|414870433|tpg|DAA48990.1| TPA: chlorophyll a-b binding protein 4 [Zea mays]
Length = 247
Score = 152 bits (385), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 85/182 (46%), Positives = 117/182 (64%), Gaps = 12/182 (6%)
Query: 43 TRRYLATVVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHA 102
TRR L +A+ + WLPG+ P YLDG+LAGD GFDPLGL EDPE+LRW+VQAELV+
Sbjct: 40 TRRSL----KAEAKGEWLPGLPSPSYLDGSLAGDNGFDPLGLAEDPENLRWFVQAELVNG 95
Query: 103 RFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYM 162
R+AM GVAG+L ++L G+ P WY+AG E+ FAS+ TLF+V+ +L + E +R+
Sbjct: 96 RWAMLGVAGMLIPEVLTKAGLINAPQWYDAGKSEY-FASSSTLFVVEFILFHYVEIRRWQ 154
Query: 163 DYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLIC 222
D +PGS ++ F +L E GYPG + NPL A + E K KE+ NG +
Sbjct: 155 DIKNPGSVNQDPIF--KSYSLPPHECGYPGS-VFNPLNFAPTL----EAKEKELANGRLA 207
Query: 223 LV 224
++
Sbjct: 208 ML 209
>gi|358346846|ref|XP_003637475.1| Chlorophyll a-b binding protein [Medicago truncatula]
gi|355503410|gb|AES84613.1| Chlorophyll a-b binding protein [Medicago truncatula]
Length = 294
Score = 152 bits (385), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 95/237 (40%), Positives = 121/237 (51%), Gaps = 40/237 (16%)
Query: 25 NKSSIGITSAFLPAKSGTTR--------RYLATVVRAQQ--RPTWLPGVDPPPYLDGTLA 74
N S +G + AFL K R TV A + RP W PG PPP+LDG+L
Sbjct: 22 NGSPMGTSKAFLGRKLKVNSNIAAPVRVRSTTTVCAAAEPDRPLWFPGSTPPPWLDGSLP 81
Query: 75 GDFGFDPLGL--------------------------GEDPESLRWYVQAELVHARFAMAG 108
GDFGFDPLGL DPESL+W VQAELVH R+AM G
Sbjct: 82 GDFGFDPLGLYNGGLIILAGNTNDHNINQSFGCDSTASDPESLKWNVQAELVHCRWAMLG 141
Query: 109 VAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
AGI + L GI P WY AG E+ F T TLFIV+L+ +G+AE +R+ D ++PG
Sbjct: 142 AAGIFIPEFLTKIGILNTPSWYTAGEQEY-FTDTTTLFIVELIFIGWAEGRRWADILNPG 200
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAK-DIRNAREWKLKEIKNGLICLV 224
+ F L G + GYPGG +PLG + +E + KEIKNG + ++
Sbjct: 201 CVNTDPIF--PNNKLTGTDVGYPGGLWFDPLGWGSGSPQKLKELRTKEIKNGRLAML 255
>gi|22753|emb|CAA78932.1| Lhca4 protein,Type 4 protein of light-harvesting complex of
photosystem I [Pinus sylvestris]
Length = 251
Score = 152 bits (385), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 89/204 (43%), Positives = 124/204 (60%), Gaps = 23/204 (11%)
Query: 33 SAFLPAKSGTTRRYLATVVRAQQRPT------------WLPGVDPPPYLDGTLAGDFGFD 80
SAFL +G++ LA VR P WLPG+ P YL+G+L GD GFD
Sbjct: 20 SAFL---TGSSVSRLARRVRPGSNPAPARSFKVEAKGEWLPGLSSPSYLNGSLPGDNGFD 76
Query: 81 PLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFA 140
PLGL EDPESL+WYVQAELV+ R+AM GVAG+L ++L G+ +P WY+AG VE+ FA
Sbjct: 77 PLGLAEDPESLKWYVQAELVNGRWAMLGVAGMLIPEVLTSIGLINVPKWYDAGKVEY-FA 135
Query: 141 STRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLG 200
S+ TLF+++ +L + E +R+ D PGS ++ F + +L E GYPGG + NPL
Sbjct: 136 SSSTLFVIEFILFHYVELRRWQDIKYPGSVNQDPLF--KQYSLPPNEVGYPGG-IFNPLN 192
Query: 201 LAKDIRNAREWKLKEIKNGLICLV 224
+ + E K KE+ NG + ++
Sbjct: 193 FSPSM----EAKEKELANGRLAML 212
>gi|145079153|tpg|DAA05901.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca6 [Acetabularia acetabulum]
Length = 201
Score = 152 bits (384), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 81/169 (47%), Positives = 104/169 (61%), Gaps = 4/169 (2%)
Query: 59 WLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLL 118
W PG PP +LDG+L D+GFDPL LG DP+ L W QAEL+H R+AM GVAGIL LL
Sbjct: 2 WFPGDTPPAHLDGSLPADYGFDPLSLGSDPDMLAWMRQAELMHCRWAMMGVAGILVPALL 61
Query: 119 RVTGIRELPVWYEAGAVEFKFAST--RTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSF 176
G +PVW+EAG V +S L +V+ L MGF ETKR+ D SPGSQ +GS
Sbjct: 62 TKLGAMNVPVWFEAGKVANDNSSVPFSALLMVEFLAMGFVETKRWYDIKSPGSQ-GDGSI 120
Query: 177 FGLEAALEGLEPGYPGGPLLNPLGLAKDIRNA-REWKLKEIKNGLICLV 224
FG+ +G GYPGG +P G +K + + ++KEI NG + +V
Sbjct: 121 FGITDDFKGKSVGYPGGTFFDPFGFSKGSEESYKTLQVKEIANGRLAMV 169
>gi|168052237|ref|XP_001778557.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162670011|gb|EDQ56587.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 273
Score = 152 bits (384), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 77/173 (44%), Positives = 105/173 (60%), Gaps = 5/173 (2%)
Query: 54 QQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGIL 113
RP W PG PP +LDG+L GDFGFDPLGLG DPE L+W+VQAELVH R+AM G AGI
Sbjct: 63 NDRPLWFPGSQPPEWLDGSLPGDFGFDPLGLGSDPELLKWFVQAELVHCRWAMLGAAGIF 122
Query: 114 FTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKE 173
+ L GI P W AG ++ F TLF+++++L +AE +R+ D I+PG +
Sbjct: 123 IPEALTKAGILNTPSWTVAGDQQY-FTDATTLFVIEIILFAWAEGRRWADIINPGCVNVD 181
Query: 174 GSFFGLEAALEGLEPGYPGGPLLNPLGLAK--DIRNAREWKLKEIKNGLICLV 224
F L G + GYPGG +PLG + D ++ + +EIKNG + ++
Sbjct: 182 PVF--PNNKLTGTDVGYPGGLWFDPLGWGQTGDAAKLKDLRTREIKNGRLAML 232
>gi|218199895|gb|EEC82322.1| hypothetical protein OsI_26601 [Oryza sativa Indica Group]
Length = 432
Score = 152 bits (383), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 73/131 (55%), Positives = 88/131 (67%), Gaps = 1/131 (0%)
Query: 38 AKSGTTRRYLATVVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQA 97
A+S + R A A RP W PG PPP+LDG+L GDFGFDPLGLG DPESLRW VQA
Sbjct: 40 AESSSARASFAVRAAAPDRPIWFPGSTPPPWLDGSLPGDFGFDPLGLGSDPESLRWNVQA 99
Query: 98 ELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAE 157
ELVH R+AM G AGI + L GI P WY AG ++ F T TLFI++L+L+G+AE
Sbjct: 100 ELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAGEQQY-FTDTTTLFIIELILIGWAE 158
Query: 158 TKRYMDYISPG 168
+R+ D I PG
Sbjct: 159 GRRWADIIKPG 169
>gi|326487922|dbj|BAJ89800.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326493860|dbj|BAJ85392.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 245
Score = 152 bits (383), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 86/205 (41%), Positives = 120/205 (58%), Gaps = 20/205 (9%)
Query: 32 TSAFLPAKSGTTRRYLATV------------VRAQQRPTWLPGVDPPPYLDGTLAGDFGF 79
+A PA S ++ R+L V Q + +WLPG+ P YLDG+LAGD GF
Sbjct: 10 VAALRPAASASSPRFLGDSGRVGLAKSTRRDVAVQAKGSWLPGLQSPAYLDGSLAGDNGF 69
Query: 80 DPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKF 139
DPL L EDPE LRW+VQAELV+ R+AM GVAG+L ++L G+ P WY+AG E F
Sbjct: 70 DPLALAEDPEDLRWFVQAELVNGRWAMLGVAGMLIPEVLTKAGLLNAPEWYDAGK-ETYF 128
Query: 140 ASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPL 199
AS+ TLF+++ +L + E +R+ D +PGS ++ F +L E GYPG + NPL
Sbjct: 129 ASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKSY--SLPPHECGYPGS-VFNPL 185
Query: 200 GLAKDIRNAREWKLKEIKNGLICLV 224
A + N K KE+ NG + ++
Sbjct: 186 NFAPTLEN----KEKELANGRLAML 206
>gi|384253051|gb|EIE26526.1| hypothetical protein COCSUDRAFT_52367 [Coccomyxa subellipsoidea
C-169]
Length = 246
Score = 151 bits (382), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 90/186 (48%), Positives = 113/186 (60%), Gaps = 9/186 (4%)
Query: 42 TTRRYLATVVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVH 101
+ R VVRA+ R +WLPG + P YL G L GDFGFDPL LGEDP +L+WY QAEL +
Sbjct: 25 SAARSARVVVRAE-RASWLPGSEIPSYLKGELPGDFGFDPLRLGEDPAALKWYQQAELQN 83
Query: 102 ARFAMAGVAGILFTDLLRVTGI---RELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAET 158
R+AM AGILF DLL G W++A + FA T TLFIV+LLL + E
Sbjct: 84 GRWAMLAAAGILFVDLLGHLGAGGPAAATPWFKASDFTY-FAPTSTLFIVELLLFAWVEV 142
Query: 159 KRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKN 218
+RY D + PGS T + F + G EPGYPGG + +PLG +K N E KLKEIKN
Sbjct: 143 RRYQDMVKPGS-TNQDPIFSQYSLPSGNEPGYPGG-IFDPLGYSKG--NMAELKLKEIKN 198
Query: 219 GLICLV 224
+ ++
Sbjct: 199 ARLAML 204
>gi|829287|emb|CAA78901.1| Lhca4 protein,Type 4 protein of light-harvesting complex of
photosystem I [Pinus sylvestris]
Length = 244
Score = 151 bits (382), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 80/177 (45%), Positives = 115/177 (64%), Gaps = 8/177 (4%)
Query: 48 ATVVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMA 107
A + + + WLPG+ P YL+G+L GD GFDPLGL EDPESL+WYVQAELV+ R+AM
Sbjct: 37 ARSFKVEAKGEWLPGLSSPSYLNGSLPGDNGFDPLGLAEDPESLKWYVQAELVNGRWAML 96
Query: 108 GVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISP 167
GVAG+L ++L G+ +P WY+AG VE+ FAS+ TLF+++ +L + E +R+ D P
Sbjct: 97 GVAGMLIPEVLTSIGLINVPKWYDAGKVEY-FASSSTLFVIEFILFHYVELRRWQDIKYP 155
Query: 168 GSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
GS ++ F + +L E GYPGG + NPL + + E K KE+ NG + ++
Sbjct: 156 GSVNQDPLF--KQYSLPPNEVGYPGG-IFNPLNFSPSM----EAKEKELANGRLAML 205
>gi|195628270|gb|ACG35965.1| chlorophyll a-b binding protein 4 [Zea mays]
Length = 247
Score = 151 bits (381), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 81/173 (46%), Positives = 113/173 (65%), Gaps = 8/173 (4%)
Query: 52 RAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAG 111
+A+ + WLPG+ P YLDG+LAGD GFDPLGL EDPE+LRW+VQAELV+ R+AM GVAG
Sbjct: 45 KAEAKGEWLPGLPSPSYLDGSLAGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAG 104
Query: 112 ILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQT 171
+L ++L G+ P WY+AG E+ FAS+ TLF+V+ +L + E +R+ D +PGS
Sbjct: 105 MLIPEVLTKAGLINAPQWYDAGKSEY-FASSSTLFVVEFILFXYVEIRRWQDIKNPGSVN 163
Query: 172 KEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
++ F +L E GYPG + NPL A + E K KE+ NG + ++
Sbjct: 164 QDPIF--KSYSLPPHECGYPGS-VFNPLNFAPTL----EAKEKELANGRLAML 209
>gi|357153802|ref|XP_003576571.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
[Brachypodium distachyon]
Length = 272
Score = 151 bits (381), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 83/174 (47%), Positives = 109/174 (62%), Gaps = 10/174 (5%)
Query: 55 QRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILF 114
RP W PG PPP+LDG+L GDFGFDPLGLG +PE+LRW+ QAEL+H+R+AM VAGIL
Sbjct: 66 DRPVWFPGTSPPPWLDGSLPGDFGFDPLGLGSEPETLRWFAQAELMHSRWAMLAVAGILI 125
Query: 115 TDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEG 174
++L+ G E WY AG E+ FA TLFI Q+ LMG+AE +R+MDY++PGS E
Sbjct: 126 PEILQKWGFMEEFSWYTAGEREY-FADPWTLFIAQMALMGWAEGRRWMDYLNPGSVDIEP 184
Query: 175 SFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE----WKLKEIKNGLICLV 224
F + + GYPGG + R + E + KEIKNG + ++
Sbjct: 185 RFPNRKNPTPDV--GYPGGLWFD---WGNWGRGSPEPVMVLRTKEIKNGRLAML 233
>gi|169743368|gb|ACA66262.1| chloroplast chlorophyll a/b binding protein precursor
[Phyllostachys edulis]
Length = 245
Score = 151 bits (381), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 88/193 (45%), Positives = 120/193 (62%), Gaps = 13/193 (6%)
Query: 33 SAFLPAKSGTTRRYLATVVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLR 92
S+ L S +TRR L R + + WLPG+ P YLDG+LAGD GFDPLGL EDPE+LR
Sbjct: 27 SSRLGRASSSTRRSL----RVEAKGEWLPGLASPAYLDGSLAGDNGFDPLGLAEDPENLR 82
Query: 93 WYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLL 152
WYVQAELV+AR+AM GVAG+L ++L GI P WY+AG + FAS+ TLF+++ +L
Sbjct: 83 WYVQAELVNARWAMLGVAGVLVPEVLTKIGIINAPQWYDAGKSTY-FASSSTLFVIEFIL 141
Query: 153 MGFAETKRYMDYI-SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREW 211
+ E +R+ D I +PG ++ F +L E GYPG + NPL + E
Sbjct: 142 FHYVEIRRWQDIIKNPGCVNQDPIF--KNYSLPPHECGYPGS-VFNPLNFEPTL----EA 194
Query: 212 KLKEIKNGLICLV 224
K KE+ NG + ++
Sbjct: 195 KEKELANGRLAML 207
>gi|297733963|emb|CBI15210.3| unnamed protein product [Vitis vinifera]
Length = 249
Score = 150 bits (380), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 79/170 (46%), Positives = 110/170 (64%), Gaps = 8/170 (4%)
Query: 55 QRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILF 114
++ WLPG+ P YLDG+L GD GFDPLGL EDPE+L+WYVQAELV++R+AM GVAG+L
Sbjct: 49 KKGEWLPGLSSPSYLDGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVAGMLL 108
Query: 115 TDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEG 174
++ GI P WY+AG E+ FAS+ TLF+++ +L + E +R+ D +PGS ++
Sbjct: 109 PEVFTKIGIINAPQWYDAGKAEY-FASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDP 167
Query: 175 SFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
F +L E GYPGG + NPL A E K KE+ NG + ++
Sbjct: 168 IF--KNYSLPPNEVGYPGG-IFNPLNFAP----TEEAKEKELANGRLAML 210
>gi|449439279|ref|XP_004137413.1| PREDICTED: chlorophyll a-b binding protein P4, chloroplastic-like
[Cucumis sativus]
gi|449522871|ref|XP_004168449.1| PREDICTED: chlorophyll a-b binding protein P4, chloroplastic-like
[Cucumis sativus]
Length = 250
Score = 150 bits (380), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 87/202 (43%), Positives = 119/202 (58%), Gaps = 18/202 (8%)
Query: 33 SAFLPAKSGTTRRYLATVVRAQQRPT----------WLPGVDPPPYLDGTLAGDFGFDPL 82
S FL SG R L+ P WLPG+ P YLDG+L GD GFDPL
Sbjct: 20 SRFLSGSSGKFNRALSVKPTTSSIPNAFKVEAKKGEWLPGLPSPTYLDGSLPGDNGFDPL 79
Query: 83 GLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFAST 142
GL EDPE+LRWY QAELV+ R+AM GVAG++ ++L GI +P WY+AG E+ FAS+
Sbjct: 80 GLAEDPENLRWYTQAELVNGRWAMLGVAGMVLPEVLTNYGIINVPKWYDAGKAEY-FASS 138
Query: 143 RTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLA 202
TLF+++ +L + E +R+ D +PGS ++ F + +L + GYPGG + NPL
Sbjct: 139 STLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIF--KQYSLPPNDVGYPGG-IFNPLNFE 195
Query: 203 KDIRNAREWKLKEIKNGLICLV 224
+ ARE KEI NG + ++
Sbjct: 196 PTLE-ARE---KEIANGRLAML 213
>gi|116786785|gb|ABK24236.1| unknown [Picea sitchensis]
gi|116790888|gb|ABK25778.1| unknown [Picea sitchensis]
gi|224285609|gb|ACN40523.1| unknown [Picea sitchensis]
Length = 251
Score = 150 bits (380), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 80/177 (45%), Positives = 114/177 (64%), Gaps = 8/177 (4%)
Query: 48 ATVVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMA 107
A + + + WLPG+ P YL+G+L GD GFDPLGL EDPESL+WYVQAELV+ R+AM
Sbjct: 44 ARSFKVEAKGEWLPGLSSPTYLNGSLPGDNGFDPLGLAEDPESLKWYVQAELVNGRWAML 103
Query: 108 GVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISP 167
GVAG+L ++L G ++P WY+AG VE+ FAS+ TLF+++ +L + E +R+ D P
Sbjct: 104 GVAGMLIPEVLTSFGFIDVPKWYDAGKVEY-FASSSTLFVIEFILFHYVELRRWQDIKYP 162
Query: 168 GSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
GS ++ F +L E GYPGG + NPL + + E K KE+ NG + ++
Sbjct: 163 GSVNQDPVF--KNYSLPPNEVGYPGG-IFNPLNFSPSM----EAKEKELANGRLAML 212
>gi|226498298|ref|NP_001150371.1| LOC100284001 [Zea mays]
gi|195638726|gb|ACG38831.1| chlorophyll a-b binding protein 4 [Zea mays]
Length = 247
Score = 150 bits (380), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 84/182 (46%), Positives = 116/182 (63%), Gaps = 12/182 (6%)
Query: 43 TRRYLATVVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHA 102
TRR L +A+ + WLPG+ P YLDG+LAGD GFDPLGL EDPE+LRW+VQAELV+
Sbjct: 40 TRRSL----KAEAKGEWLPGLPSPSYLDGSLAGDNGFDPLGLAEDPENLRWFVQAELVNG 95
Query: 103 RFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYM 162
R+AM GVAG+L ++L G+ P WY+A E+ FAS+ TLF+V+ +L + E +R+
Sbjct: 96 RWAMLGVAGMLIPEVLTKAGLINAPQWYDASKSEY-FASSSTLFVVEFILFHYVEIRRWQ 154
Query: 163 DYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLIC 222
D +PGS ++ F +L E GYPG + NPL A + E K KE+ NG +
Sbjct: 155 DIKNPGSVNQDPIFKSY--SLPPHECGYPGS-VFNPLNFAPTL----EAKEKELANGRLA 207
Query: 223 LV 224
++
Sbjct: 208 ML 209
>gi|115476576|ref|NP_001061884.1| Os08g0435900 [Oryza sativa Japonica Group]
gi|42407519|dbj|BAD10636.1| putative chlorophyll a/b-binding protein precursor [Oryza sativa
Japonica Group]
gi|113623853|dbj|BAF23798.1| Os08g0435900 [Oryza sativa Japonica Group]
gi|125603526|gb|EAZ42851.1| hypothetical protein OsJ_27444 [Oryza sativa Japonica Group]
gi|215695363|dbj|BAG90554.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737533|dbj|BAG96663.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737603|dbj|BAG96733.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215765675|dbj|BAG87372.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 244
Score = 150 bits (380), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 87/205 (42%), Positives = 125/205 (60%), Gaps = 18/205 (8%)
Query: 26 KSSIGITSAFLP------AKSGTTRRYLATVVRAQQRPTWLPGVDPPPYLDGTLAGDFGF 79
+SS + S FL A++ TTRR VRA+ + WLPG+ P YL+G+L GD GF
Sbjct: 14 RSSASLKSTFLGQSSTRLARAPTTRRN----VRAEAKGEWLPGLPSPTYLNGSLPGDNGF 69
Query: 80 DPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKF 139
DPLGL EDPE+LRW+VQAELV+ R+AM GVAG+L ++L G+ + P WY+AG + F
Sbjct: 70 DPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVLTKIGLIDAPQWYDAGKATY-F 128
Query: 140 ASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPL 199
AS+ TLF+++ +L + E +R+ D +PG ++ F +L E GYPG + NPL
Sbjct: 129 ASSSTLFVIEFILFHYVEIRRWQDIKNPGCVNQDPIFKSY--SLPPHECGYPGS-VFNPL 185
Query: 200 GLAKDIRNAREWKLKEIKNGLICLV 224
+ E K KE+ NG + ++
Sbjct: 186 NFEPTL----EAKEKELANGRLAML 206
>gi|9624495|gb|AAF90200.1|AF287276_2 chlorophyll a/b-binding protein precursor [Hordeum vulgare]
Length = 228
Score = 150 bits (379), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 83/183 (45%), Positives = 115/183 (62%), Gaps = 12/183 (6%)
Query: 42 TTRRYLATVVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVH 101
+TRR +A Q + +WLPG+ P YLDG+LAGD GFDPL L EDPE LRW+VQAELV+
Sbjct: 19 STRRDVAV----QAKGSWLPGLQSPAYLDGSLAGDNGFDPLALAEDPEDLRWFVQAELVN 74
Query: 102 ARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRY 161
R+AM GVAG+L ++L G+ P WY+AG E FAS+ TLF+++ +L + E +R+
Sbjct: 75 GRWAMLGVAGMLIPEVLTKAGLLNAPEWYDAGK-ETYFASSSTLFVIEFILFHYVEIRRW 133
Query: 162 MDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLI 221
D +PGS ++ F +L E GYPG + NPL A + N K KE+ NG +
Sbjct: 134 QDIKNPGSVNQDPIF--KSYSLPPHECGYPGS-VFNPLNFAPTLEN----KEKELANGRL 186
Query: 222 CLV 224
++
Sbjct: 187 AML 189
>gi|357147885|ref|XP_003574529.1| PREDICTED: chlorophyll a-b binding protein 4, chloroplastic-like
[Brachypodium distachyon]
Length = 244
Score = 150 bits (378), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 94/214 (43%), Positives = 126/214 (58%), Gaps = 20/214 (9%)
Query: 11 LQPSSSSSFICNDVNKSSIGITSAFLPAKSGTTRRYLATVVRAQQRPTWLPGVDPPPYLD 70
L+PS+S +N +G +S L S T+RR L R + + WLPG+ P YLD
Sbjct: 13 LRPSAS-------LNSGFLGHSSR-LGLASSTSRRSL----RVEAKGEWLPGLPSPAYLD 60
Query: 71 GTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWY 130
G L GD GFDPLGL EDPE+LRWYVQAELV+ R+AM GVAG+L +LL G+ P WY
Sbjct: 61 GKLPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVAGMLTPELLTKIGLINAPEWY 120
Query: 131 EAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGY 190
+AG + FAS+ TLF+V+ +L + E +R+ D PG ++ F +L E GY
Sbjct: 121 DAGKSTY-FASSSTLFVVEFILFHYVEIRRWQDIKEPGCVNQDPIFKSY--SLPPHECGY 177
Query: 191 PGGPLLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
PG + NPL A + E K KEI NG + ++
Sbjct: 178 PGS-VFNPLNFAPTL----EAKEKEIANGRLAML 206
>gi|157361232|gb|ABV44672.1| photosystem I light-harvesting complex type 4 protein [Bambusa
oldhamii]
Length = 244
Score = 150 bits (378), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 85/192 (44%), Positives = 119/192 (61%), Gaps = 12/192 (6%)
Query: 33 SAFLPAKSGTTRRYLATVVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLR 92
S+ L S +TRR L R + + WLPG+ P YL+G+L GD GFDPLGL EDPE+LR
Sbjct: 27 SSRLGRASSSTRRSL----RVEAKGEWLPGLPSPAYLNGSLPGDNGFDPLGLAEDPENLR 82
Query: 93 WYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLL 152
WYVQAELV+AR+AM GVAG+L ++L GI P+WY+AG + FAS+ TLF+++ +L
Sbjct: 83 WYVQAELVNARWAMLGVAGMLLPEVLTKIGIINAPLWYDAGKSTY-FASSSTLFVIEFIL 141
Query: 153 MGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWK 212
+ E +R+ D +PG ++ F +L E GYPG + NPL + E K
Sbjct: 142 FHYVEIRRWQDIKNPGCVNQDPIFKNY--SLPPHECGYPGS-VFNPLNFEPTL----EAK 194
Query: 213 LKEIKNGLICLV 224
KE+ NG + ++
Sbjct: 195 EKELANGRLAML 206
>gi|732534|gb|AAB40979.1| light harvesting complex a [Volvox carteri]
Length = 264
Score = 150 bits (378), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 92/228 (40%), Positives = 127/228 (55%), Gaps = 18/228 (7%)
Query: 9 FLLQPSSSSSFICNDVNK-SSIGITSAFLPAKSGTTRRYL-------ATVVRAQQRPTWL 60
F+L SS+ V++ SS+ + ++ +P R ++ + R P
Sbjct: 3 FVLSKSSAFGVAAKPVSRRSSVAVKASAVPENVKEARAWIDAWKSKQGALSRTPAFPAGC 62
Query: 61 PGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRV 120
P P YLDGTL GDFGFDPL LG +P L+WY QAELVHARFAM VAGIL +LL
Sbjct: 63 PAATLPGYLDGTLPGDFGFDPLYLGAEPSKLKWYAQAELVHARFAMLAVAGILVPELLTN 122
Query: 121 TGIRELP----VWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSF 176
G P WY+AG ++ FA +LF VQ+LL +AE +RY D++ PGS ++
Sbjct: 123 IGF-SWPGAGVAWYDAGKFQY-FAPASSLFGVQMLLFAWAELRRYQDFVKPGSANQD-PI 179
Query: 177 FGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
F +G EPGYPGG + +P G +K + + K KEIKNG + ++
Sbjct: 180 FSNNKLPDGNEPGYPGG-IFDPFGWSKG--DMKSLKTKEIKNGRLAML 224
>gi|168011208|ref|XP_001758295.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162690330|gb|EDQ76697.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 270
Score = 150 bits (378), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 80/171 (46%), Positives = 104/171 (60%), Gaps = 4/171 (2%)
Query: 55 QRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILF 114
RP WLPG + P +LDG+L GD+GFDPL L +P L W VQAELVH R+AM G AGI
Sbjct: 64 DRPLWLPGSEAPKWLDGSLPGDYGFDPLDLAAEPGRLNWMVQAELVHCRWAMLGAAGIFI 123
Query: 115 TDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEG 174
+LL GI P WY+AG + FA TLFIV+LLLM +AE++R+ D PGS +
Sbjct: 124 PELLTKIGILNTPSWYKAGDATY-FADQGTLFIVELLLMAWAESRRWADIARPGSVNTDP 182
Query: 175 SFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNA-REWKLKEIKNGLICLV 224
F L G + GYPGG +PLG + +E + KE+KNG + ++
Sbjct: 183 IF--PNNKLTGTDVGYPGGLWFDPLGWGSGSEDKLKEIRTKEVKNGRLAML 231
>gi|125561654|gb|EAZ07102.1| hypothetical protein OsI_29351 [Oryza sativa Indica Group]
Length = 244
Score = 149 bits (377), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 89/214 (41%), Positives = 131/214 (61%), Gaps = 20/214 (9%)
Query: 11 LQPSSSSSFICNDVNKSSIGITSAFLPAKSGTTRRYLATVVRAQQRPTWLPGVDPPPYLD 70
L+PS+S + + +G +S L A++ TTRR VRA+ + WLPG+ P YL+
Sbjct: 13 LRPSAS-------LKSTFLGQSSTRL-ARAPTTRRN----VRAEAKGEWLPGLPSPTYLN 60
Query: 71 GTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWY 130
G+L GD GFDPLGL EDPE+LRW+VQAELV+ R+AM GVAG+L ++L G+ + P WY
Sbjct: 61 GSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVLTKIGLIDAPQWY 120
Query: 131 EAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGY 190
+AG + FAS+ TLF+++ +L + E +R+ D +PG ++ F +L E GY
Sbjct: 121 DAGKATY-FASSSTLFVIEFILFHYVEIRRWQDIKNPGCVNQDPIFKSY--SLPPHECGY 177
Query: 191 PGGPLLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
PG + NPL + E K KE+ NG + ++
Sbjct: 178 PGS-VFNPLNFEPTL----EAKEKELANGRLAML 206
>gi|100801744|emb|CAK24966.1| chlorophyll a/b binding protein [Solanum tuberosum]
Length = 251
Score = 149 bits (377), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 80/191 (41%), Positives = 117/191 (61%), Gaps = 12/191 (6%)
Query: 34 AFLPAKSGTTRRYLATVVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRW 93
+F P+ S + + + Q WLPG+ P YLDG+L GD GFDPLGL EDPE+L+W
Sbjct: 35 SFRPSTSSSYNSFKVEAKKGQ----WLPGLASPDYLDGSLPGDNGFDPLGLAEDPENLKW 90
Query: 94 YVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLM 153
++QAELV+ R+AM GVAG+L ++ GI +P WY+AG E+ FAS+ TLF+++ +L
Sbjct: 91 FIQAELVNGRWAMLGVAGMLLPEVFTSIGILNVPKWYDAGKSEY-FASSSTLFVIEFILF 149
Query: 154 GFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKL 213
+ E +R+ D +PGS ++ F +L + GYPGG + NPL A E K
Sbjct: 150 HYVEIRRWQDIKNPGSVNQDPIF--KSYSLPPNKCGYPGG-IFNPLNFAP----TEEAKE 202
Query: 214 KEIKNGLICLV 224
KE+ NG + ++
Sbjct: 203 KELANGRLAML 213
>gi|224285766|gb|ACN40598.1| unknown [Picea sitchensis]
Length = 251
Score = 149 bits (377), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 79/177 (44%), Positives = 114/177 (64%), Gaps = 8/177 (4%)
Query: 48 ATVVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMA 107
A + + + WLPG+ P YL+G+L GD GFDPLGL EDP+SL+WYVQAELV+ R+AM
Sbjct: 44 ARSFKVEAKGEWLPGLSSPTYLNGSLPGDNGFDPLGLAEDPDSLKWYVQAELVNGRWAML 103
Query: 108 GVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISP 167
GVAG+L ++L G ++P WY+AG VE+ FAS+ TLF+++ +L + E +R+ D P
Sbjct: 104 GVAGMLIPEVLTSFGFIDVPKWYDAGKVEY-FASSSTLFVIEFILFHYVELRRWQDIKYP 162
Query: 168 GSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
GS ++ F +L E GYPGG + NPL + + E K KE+ NG + ++
Sbjct: 163 GSVNQDPVF--KNYSLPPNEVGYPGG-IFNPLNFSPSM----EAKEKELANGRLAML 212
>gi|168060921|ref|XP_001782441.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162666112|gb|EDQ52776.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 238
Score = 149 bits (376), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 80/171 (46%), Positives = 104/171 (60%), Gaps = 4/171 (2%)
Query: 55 QRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILF 114
RP WLPG + P +LDG+L GD+GFDPL L +P L W VQAELVH R+AM G AGI
Sbjct: 13 DRPLWLPGSEAPKWLDGSLPGDYGFDPLDLAAEPGRLNWMVQAELVHCRWAMLGAAGIFI 72
Query: 115 TDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEG 174
+LL GI P WY+AG + FA TLFIV+LLLM +AE++R+ D PGS +
Sbjct: 73 PELLTKIGILNTPSWYKAGDATY-FADQGTLFIVELLLMAWAESRRWADIARPGSVNTDP 131
Query: 175 SFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNA-REWKLKEIKNGLICLV 224
F L G + GYPGG +PLG + +E + KE+KNG + ++
Sbjct: 132 IF--PNNKLTGTDVGYPGGLWFDPLGWGSGSEDKLKEIRTKEVKNGRLAML 180
>gi|169930144|gb|ACB05669.1| chloroplast chlorophyll a/b binding protein [Capsicum annuum]
Length = 250
Score = 149 bits (376), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 81/191 (42%), Positives = 117/191 (61%), Gaps = 14/191 (7%)
Query: 34 AFLPAKSGTTRRYLATVVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRW 93
+F P+ S + + A ++ WLPG+ P YLDG+L GD GFDPLGL EDPE+L+W
Sbjct: 35 SFRPSTSNNSFKVEA------KKGEWLPGLASPAYLDGSLPGDNGFDPLGLAEDPENLKW 88
Query: 94 YVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLM 153
Y+QAELV+ R+AM GVAG+L ++ GI +P WY+AG E+ FAS+ TLF+++ +L
Sbjct: 89 YIQAELVNGRWAMLGVAGMLLPEVFTSIGILNVPKWYDAGKAEY-FASSSTLFVIEFILF 147
Query: 154 GFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKL 213
+ E +R+ D +PG ++ F +L E GYPGG + NPL A E K
Sbjct: 148 HYVEIRRWQDIKNPGCVNQDPIF--KNYSLPPNECGYPGG-IFNPLNFAA----TEEAKE 200
Query: 214 KEIKNGLICLV 224
KE+ NG + ++
Sbjct: 201 KELANGRLAML 211
>gi|217073418|gb|ACJ85068.1| unknown [Medicago truncatula]
gi|388507876|gb|AFK42004.1| unknown [Medicago truncatula]
Length = 253
Score = 149 bits (376), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 86/205 (41%), Positives = 122/205 (59%), Gaps = 18/205 (8%)
Query: 30 GITSAFLPAKSGTTRRYLA----------TVVRAQQRPTWLPGVDPPPYLDGTLAGDFGF 79
G+ S FL SG R +A + ++ WLPG+ P YL G+L GD GF
Sbjct: 17 GLKSRFLTGSSGKLNREVAIRPMGCSPSASFKVEAKKGEWLPGLASPGYLTGSLPGDNGF 76
Query: 80 DPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKF 139
DPLGL EDPE+L+W+VQAELV+ R+AM GVAG+L ++ GI +P WY+AG E+ F
Sbjct: 77 DPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTNIGIINVPKWYDAGKEEY-F 135
Query: 140 ASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPL 199
AS+ TLF+++ +L + E +R+ D +PGS ++ F + +L E GYPGG + NPL
Sbjct: 136 ASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIF--KQYSLPKGEVGYPGG-IFNPL 192
Query: 200 GLAKDIRNAREWKLKEIKNGLICLV 224
A + E K KEI NG + ++
Sbjct: 193 NFAPTL----EAKEKEIANGRLAML 213
>gi|449440798|ref|XP_004138171.1| PREDICTED: chlorophyll a-b binding protein P4, chloroplastic-like
[Cucumis sativus]
gi|449477217|ref|XP_004154963.1| PREDICTED: chlorophyll a-b binding protein P4, chloroplastic-like
[Cucumis sativus]
Length = 252
Score = 149 bits (376), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 88/203 (43%), Positives = 121/203 (59%), Gaps = 20/203 (9%)
Query: 33 SAFLPAKSGTTRRYLATV-----------VRAQQRPTWLPGVDPPPYLDGTLAGDFGFDP 81
S FL SG +R L+ V A+ + WLPG+ P YL+G+L GD GFDP
Sbjct: 20 SRFLSGSSGKLQRVLSVKPVSASSSSSFKVEAK-KGEWLPGLPSPMYLNGSLPGDNGFDP 78
Query: 82 LGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFAS 141
LGL EDPE+LRWYVQAELV+ R+AM GVAG+L ++ GI P WY+AG E+ FAS
Sbjct: 79 LGLAEDPENLRWYVQAELVNGRWAMLGVAGMLLPEVFTKIGIINAPQWYDAGKAEY-FAS 137
Query: 142 TRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGL 201
+ TLF+++ +L + E +R+ D +PG ++ F + +L E GYPGG + NPL
Sbjct: 138 SSTLFVIEFILFHYVEIRRWQDIKNPGCVNQDPIF--KQYSLPPNECGYPGG-IFNPLNF 194
Query: 202 AKDIRNAREWKLKEIKNGLICLV 224
A + E K KEI NG + ++
Sbjct: 195 APTL----EAKEKEIANGRLAML 213
>gi|356516812|ref|XP_003527087.1| PREDICTED: chlorophyll a-b binding protein P4, chloroplastic-like
[Glycine max]
Length = 252
Score = 149 bits (376), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 86/202 (42%), Positives = 119/202 (58%), Gaps = 18/202 (8%)
Query: 33 SAFLPAKSGTTRRYL----------ATVVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPL 82
S FL SG R + A+ ++ WLPG+ P YL+GTL GD GFDPL
Sbjct: 20 SRFLTGSSGKLNREVTMRPMGCPPSASFKVEAKKGEWLPGLASPTYLNGTLPGDNGFDPL 79
Query: 83 GLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFAST 142
GL EDPE+LRWYVQAELV+ R+AM GVAG+L ++ GI P WY+AG E+ FAS+
Sbjct: 80 GLAEDPENLRWYVQAELVNGRWAMLGVAGMLLPEVFTKIGIINAPQWYDAGKSEY-FASS 138
Query: 143 RTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLA 202
TLF+++ +L + E +R+ D +PGS ++ F + +L E GYPG + NPL A
Sbjct: 139 STLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIF--KQYSLPQHECGYPGS-VFNPLNFA 195
Query: 203 KDIRNAREWKLKEIKNGLICLV 224
+ E K KE+ NG + ++
Sbjct: 196 PTL----EAKEKELANGRLAML 213
>gi|193872600|gb|ACF23028.1| ST49-6 [Eutrema halophilum]
Length = 215
Score = 149 bits (375), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 78/156 (50%), Positives = 97/156 (62%), Gaps = 7/156 (4%)
Query: 48 ATVVRA----QQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHAR 103
A +VRA +RP W PG PP +LDG+L GDFGFDPLGL DP+SL+W QAELVH R
Sbjct: 45 AALVRAVAADPERPIWFPGSTPPEWLDGSLPGDFGFDPLGLSSDPDSLKWNAQAELVHCR 104
Query: 104 FAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMD 163
+AM G AGI + L GI P WY AG E+ F TLF+V+L+L+G+AE +R+ D
Sbjct: 105 WAMLGAAGIFIPEFLTKIGILNTPSWYTAGEQEY-FTDKTTLFVVELILIGWAEGRRWAD 163
Query: 164 YISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPL 199
I PGS + F L G + GYPGG +PL
Sbjct: 164 IIKPGSVNTDPIF--PNNKLTGTDVGYPGGLWFDPL 197
>gi|224124190|ref|XP_002330127.1| light-harvesting complex I protein Lhca4 [Populus trichocarpa]
gi|222871261|gb|EEF08392.1| light-harvesting complex I protein Lhca4 [Populus trichocarpa]
Length = 251
Score = 148 bits (374), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 85/201 (42%), Positives = 117/201 (58%), Gaps = 17/201 (8%)
Query: 33 SAFLPAKSGTTRRYLATVVRAQQRPT---------WLPGVDPPPYLDGTLAGDFGFDPLG 83
S FL R L+ A P+ WLPG+ P YL+G+L GD GFDPLG
Sbjct: 20 SRFLAGAPSKLNRELSIKPMASSSPSFKVEAKKGEWLPGLPSPSYLNGSLPGDNGFDPLG 79
Query: 84 LGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTR 143
L EDPE+LRW+VQAELV+ R+AM GVAG+L ++ GI P WY+AG E+ FAS+
Sbjct: 80 LAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIINAPQWYDAGKAEY-FASSS 138
Query: 144 TLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAK 203
TLF+++ +L + E +R+ D +PG ++ F + +L E GYPGG + NPL A
Sbjct: 139 TLFVIEFILFHYVEIRRWQDIKNPGCVNQDPIF--KQYSLPPNECGYPGG-IFNPLNFAP 195
Query: 204 DIRNAREWKLKEIKNGLICLV 224
I E K KE+ NG + ++
Sbjct: 196 TI----EAKEKELANGRLAML 212
>gi|118489040|gb|ABK96327.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 251
Score = 148 bits (374), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 85/201 (42%), Positives = 117/201 (58%), Gaps = 17/201 (8%)
Query: 33 SAFLPAKSGTTRRYLATVVRAQQRPT---------WLPGVDPPPYLDGTLAGDFGFDPLG 83
S FL R L+ A P+ WLPG+ P YL+G+L GD GFDPLG
Sbjct: 20 SRFLAGAPSKLNRELSIKPMASSSPSFKVEAKKGEWLPGLPSPSYLNGSLPGDNGFDPLG 79
Query: 84 LGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTR 143
L EDPE+LRW+VQAELV+ R+AM GVAG+L ++ GI P WY+AG E+ FAS+
Sbjct: 80 LAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIINAPQWYDAGKAEY-FASSS 138
Query: 144 TLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAK 203
TLF+++ +L + E +R+ D +PG ++ F + +L E GYPGG + NPL A
Sbjct: 139 TLFVIEFILFHYVEIRRWQDIKNPGCVNQDPIF--KQYSLPPNECGYPGG-IFNPLNFAP 195
Query: 204 DIRNAREWKLKEIKNGLICLV 224
I E K KE+ NG + ++
Sbjct: 196 TI----EAKEKELANGRLAML 212
>gi|312281571|dbj|BAJ33651.1| unnamed protein product [Thellungiella halophila]
Length = 251
Score = 148 bits (374), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 80/184 (43%), Positives = 120/184 (65%), Gaps = 9/184 (4%)
Query: 41 GTTRRYLATVVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELV 100
G++ + + V A+ + WLPG+ P YL+G+LAGD GFDPLGL EDPE+L+W+VQAELV
Sbjct: 40 GSSSKTASFKVEAK-KGEWLPGLASPGYLNGSLAGDNGFDPLGLAEDPENLKWFVQAELV 98
Query: 101 HARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKR 160
+ R+AM GVAG+L ++ GI +P WY+AG ++ FAS+ TLF+++ +L + E +R
Sbjct: 99 NGRWAMLGVAGMLLPEVFTKIGIINVPEWYDAGKEQY-FASSSTLFVIEFILFHYVEIRR 157
Query: 161 YMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGL 220
+ D +PGS ++ F + +L E GYPGG + NPL A + E K KE+ NG
Sbjct: 158 WQDIKNPGSVNQDPIF--KQYSLPPNEVGYPGG-IFNPLNFAPTV----EAKEKELANGR 210
Query: 221 ICLV 224
+ ++
Sbjct: 211 LAML 214
>gi|268612161|pdb|2WSC|4 Chain 4, Improved Model Of Plant Photosystem I
gi|268612179|pdb|2WSE|4 Chain 4, Improved Model Of Plant Photosystem I
gi|268612197|pdb|2WSF|4 Chain 4, Improved Model Of Plant Photosystem I
Length = 251
Score = 148 bits (374), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 88/206 (42%), Positives = 120/206 (58%), Gaps = 18/206 (8%)
Query: 30 GITSAFLPAKSGTTRRYLA----------TVVRAQQRPTWLPGVDPPPYLDGTLAGDFGF 79
G+ S FL SG R +A + ++ WLPG+ P YL G+L GD GF
Sbjct: 17 GLKSRFLGGSSGKLNRGVAFRPVGCSPSASFKVEAKKGEWLPGLASPGYLTGSLPGDNGF 76
Query: 80 DPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKF 139
DPLGL EDPE+LRW+VQAELV+ R+AM GVAG+L ++ GI +P WY AG E+ F
Sbjct: 77 DPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGIINVPKWYAAGKEEY-F 135
Query: 140 ASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPL 199
AS+ TLF+++ +L + E +R+ D +PGS ++ F + +L E GYPGG + NPL
Sbjct: 136 ASSSTLFVIEFILSHYVEIRRWQDIKNPGSVNQDPIF--KQYSLPAGEVGYPGG-IFNPL 192
Query: 200 GLAKDIRNAREWKLKEIKNGLICLVL 225
A + E K KEI NG + L
Sbjct: 193 NFAPTL----EAKEKEIANGRLMLAF 214
>gi|75266203|sp|Q9SQL2.1|CB24_PEA RecName: Full=Chlorophyll a-b binding protein P4, chloroplastic;
AltName: Full=LHCI type III CAB-P4; Flags: Precursor
gi|6470348|gb|AAF13731.1| PSI light-harvesting antenna chlorophyll a/b-binding protein [Pisum
sativum]
Length = 252
Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 87/205 (42%), Positives = 121/205 (59%), Gaps = 18/205 (8%)
Query: 30 GITSAFLPAKSGTTRRYLA----------TVVRAQQRPTWLPGVDPPPYLDGTLAGDFGF 79
G+ S FL SG R +A + ++ WLPG+ P YL G+L GD GF
Sbjct: 17 GLKSRFLGGSSGKLNRGVAFRPVGCSPSASFKVEAKKGEWLPGLASPGYLTGSLPGDNGF 76
Query: 80 DPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKF 139
DPLGL EDPE+LRW+VQAELV+ R+AM GVAG+L ++ GI +P WY AG E+ F
Sbjct: 77 DPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGIINVPKWYAAGKEEY-F 135
Query: 140 ASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPL 199
AS+ TLF+++ +L + E +R+ D +PGS ++ F + +L E GYPGG + NPL
Sbjct: 136 ASSSTLFVIEFILSHYVEIRRWQDIKNPGSVNQDPIF--KQYSLPAGEVGYPGG-IFNPL 192
Query: 200 GLAKDIRNAREWKLKEIKNGLICLV 224
A + E K KEI NG + ++
Sbjct: 193 NFAPTL----EAKEKEIANGRLAML 213
>gi|87313165|gb|ABD37879.1| light-harvesting chlorophyll-a/b binding protein Lhca2 [Mesostigma
viride]
Length = 242
Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 91/202 (45%), Positives = 119/202 (58%), Gaps = 18/202 (8%)
Query: 32 TSAFLPAKSGTTRRYLATVVRAQ---------QRPTWLPGVDPPPYLDGTLAGDFGFDPL 82
S FL +K + R AT +AQ RP W PG P +LDG+L GDFG+DPL
Sbjct: 8 ASTFLGSKVASVAR--ATPAKAQAKFVVSASSNRPVWFPGNAPRAWLDGSLPGDFGYDPL 65
Query: 83 GLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFAST 142
GL DP+ L+W VQAEL +AR+AM GVAG+L DL G+ WYEA V+++ A
Sbjct: 66 GLSSDPQVLKWMVQAELQNARWAMLGVAGMLGADLANKVGLPAAVQWYEAPLVDYQ-ADW 124
Query: 143 RTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLA 202
+TL +VQL+L + E +R+ D+ SPGS + FG + GYPGGP +PLG +
Sbjct: 125 KTLLVVQLVLHAWVEGRRWADFHSPGSANADP--FG-NSLPSTATTGYPGGP-FDPLGFS 180
Query: 203 KDIRNAREWKLKEIKNGLICLV 224
K N E KLKEIKNG + +V
Sbjct: 181 KG--NLPELKLKEIKNGRLAMV 200
>gi|3789952|gb|AAC67557.1| chlorophyll a/b-binding protein presursor [Oryza sativa Japonica
Group]
Length = 244
Score = 148 bits (373), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 86/204 (42%), Positives = 123/204 (60%), Gaps = 18/204 (8%)
Query: 27 SSIGITSAFLP------AKSGTTRRYLATVVRAQQRPTWLPGVDPPPYLDGTLAGDFGFD 80
SS + S FL A++ TTRR VRA+ + WLPG+ P YL+G+L GD GFD
Sbjct: 15 SSASLKSTFLGQSSTRLARAPTTRRN----VRAEAKGEWLPGLPSPTYLNGSLPGDNGFD 70
Query: 81 PLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFA 140
PLGL EDPE+LRW+VQAELV+ R+AM GVAG+L ++L G+ + P WY+AG + FA
Sbjct: 71 PLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVLTKIGLIDAPQWYDAGKATY-FA 129
Query: 141 STRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLG 200
S+ TLF+++ +L + E +++ D +PG ++ F L E GYPG + NPL
Sbjct: 130 SSNTLFVIEFILFHYVEIRQWQDIKNPGCVNQDPIFKSYR--LPSDECGYPGS-VFNPLN 186
Query: 201 LAKDIRNAREWKLKEIKNGLICLV 224
+ E K KE+ NG + ++
Sbjct: 187 FEPTL----EAKEKELANGRLAML 206
>gi|255070815|ref|XP_002507489.1| chlorophyll a/b-binding protein, chloroplast precursor [Micromonas
sp. RCC299]
gi|226522764|gb|ACO68747.1| chlorophyll a/b-binding protein, chloroplast precursor [Micromonas
sp. RCC299]
Length = 249
Score = 148 bits (373), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 78/181 (43%), Positives = 106/181 (58%), Gaps = 3/181 (1%)
Query: 45 RYLATVVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARF 104
R V A RP + PG PP +LDGT+ GD+GFDPLGLGED +L WY QAEL+HAR+
Sbjct: 30 RSSVRTVAAAVRPNYFPGSTPPKHLDGTMPGDYGFDPLGLGEDKAALAWYQQAELMHARW 89
Query: 105 AMAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMD 163
AM GVAG+ ++ + LP W +A + A TLF+VQ+ LM +AE +R+ D
Sbjct: 90 AMLGVAGMAAPEIFGNPLVDGPLPNWADAPFYDGYIADANTLFVVQMFLMNWAEVRRWQD 149
Query: 164 YISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
+PGS + + G + GYPGG L NP+G+AK + + KEI NG + +
Sbjct: 150 MKNPGSVHADP--YDESRKCTGTDVGYPGGGLFNPMGMAKSAEEEKTLRTKEIANGRLAM 207
Query: 224 V 224
V
Sbjct: 208 V 208
>gi|145079846|tpg|DAA05942.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca4 [Micromonas sp. CCMP490]
Length = 250
Score = 148 bits (373), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 85/202 (42%), Positives = 117/202 (57%), Gaps = 12/202 (5%)
Query: 33 SAFLPAKSGTTR-RYLATVVRAQ--------QRPTWLPGVDPPPYLDGTLAGDFGFDPLG 83
SA L +S T R R +A+ RA RP + PG PP +LDGT+ GD+GFDPLG
Sbjct: 10 SAGLTQRSRTVRPRSVASKARASVRVGAVAAARPNFFPGTTPPKHLDGTMPGDYGFDPLG 69
Query: 84 LGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFKFAST 142
LGED +L WY QAEL HAR+AM GV G+ +L++ + +P W EA + AS
Sbjct: 70 LGEDKVALEWYKQAELQHARWAMLGVTGMAAPELIQNPFVEGAMPNWAEAPLWDGYMASP 129
Query: 143 RTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLA 202
TLF+VQ+ +M +AE +R+ D +PG+ E G + GYP G L +P+G+A
Sbjct: 130 NTLFVVQMFMMNWAEVRRWQDMKNPGTMN-EDPLTGANKGDTNTDVGYPKG-LFDPMGMA 187
Query: 203 KDIRNAREWKLKEIKNGLICLV 224
KD + K+KEI NG + +V
Sbjct: 188 KDPEKVKVLKVKEIANGRLAMV 209
>gi|145079606|tpg|DAA05920.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca4 [Mesostigma viride]
Length = 238
Score = 148 bits (373), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 91/202 (45%), Positives = 119/202 (58%), Gaps = 18/202 (8%)
Query: 32 TSAFLPAKSGTTRRYLATVVRAQ---------QRPTWLPGVDPPPYLDGTLAGDFGFDPL 82
S FL +K + R AT +AQ RP W PG P +LDG+L GDFG+DPL
Sbjct: 4 ASTFLGSKVASVAR--ATPAKAQAKFVVSASSNRPVWFPGNAPRAWLDGSLPGDFGYDPL 61
Query: 83 GLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFAST 142
GL DP+ L+W VQAEL +AR+AM GVAG+L DL G+ WYEA V+++ A
Sbjct: 62 GLSSDPQVLKWMVQAELQNARWAMLGVAGMLGADLANKVGLPAAVQWYEAPLVDYQ-ADW 120
Query: 143 RTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLA 202
+TL +VQL+L + E +R+ D+ SPGS + FG + GYPGGP +PLG +
Sbjct: 121 KTLLVVQLVLHAWVEGRRWADFHSPGSANADP--FG-NSLPSTATTGYPGGP-FDPLGFS 176
Query: 203 KDIRNAREWKLKEIKNGLICLV 224
K N E KLKEIKNG + +V
Sbjct: 177 KG--NLPELKLKEIKNGRLAMV 196
>gi|255547367|ref|XP_002514741.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223546345|gb|EEF47847.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 251
Score = 147 bits (372), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 77/170 (45%), Positives = 112/170 (65%), Gaps = 8/170 (4%)
Query: 55 QRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILF 114
++ WLPG+ P YL+G+L GD GFDPLGL EDPE+L+W+VQAELV+ R+AM GVAG+L
Sbjct: 51 KKGEWLPGLPSPAYLNGSLPGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLL 110
Query: 115 TDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEG 174
++ GI +P WY+AG E+ FAS+ TLF+++ +L + E +R+ D +PGS ++
Sbjct: 111 PEVFTKIGIINVPKWYDAGKEEY-FASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDP 169
Query: 175 SFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
F + +L E GYPGG + NPL A + E K KE+ NG + ++
Sbjct: 170 IF--KQYSLPPNEVGYPGG-IFNPLNFAPTL----EAKEKELANGRLAML 212
>gi|125561651|gb|EAZ07099.1| hypothetical protein OsI_29348 [Oryza sativa Indica Group]
Length = 244
Score = 147 bits (372), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 89/214 (41%), Positives = 130/214 (60%), Gaps = 20/214 (9%)
Query: 11 LQPSSSSSFICNDVNKSSIGITSAFLPAKSGTTRRYLATVVRAQQRPTWLPGVDPPPYLD 70
L+PS+S + + +G +S L A++ TTRR VRA+ + WLPG+ P YL+
Sbjct: 13 LRPSAS-------LKSTFLGQSSTRL-ARAPTTRRN----VRAEAKGEWLPGLPSPTYLN 60
Query: 71 GTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWY 130
G+L GD GFDPLGL EDPE+LRW+VQAELV+ R+AM GVAG+L ++L G+ + P WY
Sbjct: 61 GSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVLTKIGLIDAPQWY 120
Query: 131 EAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGY 190
+AG + FAS+ TLF+++ +L E +R+ D +PG ++ F +L E GY
Sbjct: 121 DAGKATY-FASSSTLFVIEFILFHSVEIRRWQDIKNPGCVNQDPIFKSY--SLPPHECGY 177
Query: 191 PGGPLLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
PG + NPL + E K KE+ NG + ++
Sbjct: 178 PGS-VFNPLNFEPTL----EAKEKELANGRLAML 206
>gi|18539429|gb|AAL74385.1|AF359117_1 LHC I type II chlorophyll binding protein [Pinus sylvestris]
gi|18539431|gb|AAL74386.1|AF359118_1 LHC I type II chlorophyll binding protein [Pinus sylvestris]
Length = 137
Score = 147 bits (372), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 72/133 (54%), Positives = 91/133 (68%), Gaps = 3/133 (2%)
Query: 39 KSGTTRRYLATVVRAQQ--RPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQ 96
K+ RR TV +A Q RP W PG PPP+LDG+L GDFGFDPLGLG DPE+L+W VQ
Sbjct: 1 KAAMPRRAAVTVSQAVQTERPLWFPGNTPPPWLDGSLPGDFGFDPLGLGSDPETLKWMVQ 60
Query: 97 AELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFA 156
AELVH R+AM G AGI +LL GI P WY AG +E+ F TLF+V+++ +G+A
Sbjct: 61 AELVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGELEY-FTDKTTLFVVEMIFLGWA 119
Query: 157 ETKRYMDYISPGS 169
E +R+ D + PGS
Sbjct: 120 EGRRWADILKPGS 132
>gi|297819360|ref|XP_002877563.1| chlorophyll a/b-binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297323401|gb|EFH53822.1| chlorophyll a/b-binding protein [Arabidopsis lyrata subsp. lyrata]
Length = 252
Score = 147 bits (371), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 78/170 (45%), Positives = 112/170 (65%), Gaps = 8/170 (4%)
Query: 55 QRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILF 114
++ WLPG+ P YL G+LAGD GFDPLGL EDPE+L+W+VQAELV+ R+AM GVAG+L
Sbjct: 54 KKGEWLPGLASPDYLTGSLAGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLL 113
Query: 115 TDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEG 174
++ GI +P WY+AG ++ FAS+ TLF+++ +L + E +R+ D +PGS ++
Sbjct: 114 PEVFTKLGIINVPEWYDAGKEQY-FASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDP 172
Query: 175 SFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
F + +L E GYPGG + NPL A + E K KEI NG + ++
Sbjct: 173 IF--KQYSLPKGEVGYPGG-IFNPLNFAPTL----EAKEKEIANGRLAML 215
>gi|225444667|ref|XP_002277280.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic [Vitis
vinifera]
gi|297738533|emb|CBI27778.3| unnamed protein product [Vitis vinifera]
Length = 259
Score = 147 bits (371), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 82/171 (47%), Positives = 104/171 (60%), Gaps = 4/171 (2%)
Query: 55 QRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILF 114
RP W PG PP +LDG+L GDFGFDPLGLG DPE LRW+ QAEL+H+R+AM VAGIL
Sbjct: 53 DRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPELLRWFAQAELMHSRWAMLAVAGILI 112
Query: 115 TDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEG 174
+ L G E WY+AGA EF FA TLF+VQL LMG+ E +R+ D I+PG +
Sbjct: 113 PECLERLGFIENFSWYDAGAQEF-FADPTTLFVVQLALMGWVEGRRWADLINPGCVDIQL 171
Query: 175 SFFGLEAALEGLEPGYPGGPLLNPLGLAK-DIRNAREWKLKEIKNGLICLV 224
+F A + GYPGG +P + + KEIKNG + ++
Sbjct: 172 TF--PNKAKPKPDVGYPGGLWFDPFMWGRGSPEPVMVLRTKEIKNGRLAML 220
>gi|30692874|ref|NP_190331.3| chlorophyll a-b binding protein 4 [Arabidopsis thaliana]
gi|115385|sp|P27521.1|CA4_ARATH RecName: Full=Chlorophyll a-b binding protein 4, chloroplastic;
AltName: Full=LHCI type III CAB-4; Flags: Precursor
gi|166646|gb|AAA32760.1| light-harvesting chlorophyll a/b binding protein [Arabidopsis
thaliana]
gi|6522530|emb|CAB61973.1| CHLOROPHYLL A-B BINDING PROTEIN 4 PRECURSOR homolog [Arabidopsis
thaliana]
gi|20260362|gb|AAM13079.1| chlorophyll A-B binding protein 4 precursor homolog [Arabidopsis
thaliana]
gi|21554365|gb|AAM63472.1| chlorophyll a-b binding protein 4 precursor homolog [Arabidopsis
thaliana]
gi|23197770|gb|AAN15412.1| chlorophyll A-B binding protein 4 precursor homolog [Arabidopsis
thaliana]
gi|332644764|gb|AEE78285.1| chlorophyll a-b binding protein 4 [Arabidopsis thaliana]
Length = 251
Score = 147 bits (371), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 77/170 (45%), Positives = 112/170 (65%), Gaps = 8/170 (4%)
Query: 55 QRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILF 114
++ WLPG+ P YL G+LAGD GFDPLGL EDPE+L+W+VQAELV+ R+AM GVAG+L
Sbjct: 53 KKGEWLPGLASPDYLTGSLAGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLL 112
Query: 115 TDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEG 174
++ GI +P WY+AG ++ FAS+ TLF+++ +L + E +R+ D +PGS ++
Sbjct: 113 PEVFTKIGIINVPEWYDAGKEQY-FASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDP 171
Query: 175 SFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
F + +L E GYPGG + NPL A +E K KE+ NG + ++
Sbjct: 172 IF--KQYSLPKGEVGYPGG-IFNPLNFAP----TQEAKEKELANGRLAML 214
>gi|388508808|gb|AFK42470.1| unknown [Lotus japonicus]
Length = 259
Score = 147 bits (370), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 86/197 (43%), Positives = 115/197 (58%), Gaps = 7/197 (3%)
Query: 32 TSAFLPAKSGTT-RRYLATVVRA--QQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDP 88
T+ +LP + T ++ ++ V RP W PG PP +LDG+L GDFGFDP+GLG DP
Sbjct: 27 TATWLPRRIHTNAKKGVSDVCEPLPPDRPLWFPGSSPPEWLDGSLPGDFGFDPIGLGSDP 86
Query: 89 ESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIV 148
E L+W QAEL+HAR+AM GV+GIL +LL G E WYEAG E+ FA TLFIV
Sbjct: 87 ELLKWLAQAELMHARWAMLGVSGILIPELLEKMGYVENYSWYEAGTQEY-FADPTTLFIV 145
Query: 149 QLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAK-DIRN 207
QL LMG+ E +R+ D ++PGS E + GYPGG +P+ +
Sbjct: 146 QLALMGWVEGRRWADLVNPGSVDIEPKLPNRPNPKPDV--GYPGGLWFDPMMWGRGSPEP 203
Query: 208 AREWKLKEIKNGLICLV 224
+ KEIKNG + ++
Sbjct: 204 VMVLRTKEIKNGRLAML 220
>gi|311994|emb|CAA50763.1| light harvesting complex I chlorophyll binding protein [Pyrobotrys
stellata]
Length = 260
Score = 147 bits (370), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 89/217 (41%), Positives = 122/217 (56%), Gaps = 25/217 (11%)
Query: 24 VNKSSIGITSAFLPAKSGTTRRYLATVVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLG 83
NK+++G + PA++ RR + V RA+QR +W PG P YL G LAGD+GFDPLG
Sbjct: 6 ANKAALGFRA---PAQA---RR--SVVARAEQRASWFPGNPAPEYLKGELAGDYGFDPLG 57
Query: 84 LGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRE------LPVWYEAGAV-- 135
G++P L W VQAELVH R+AM G AGIL ++ TG++ P W+EAG V
Sbjct: 58 FGDEPRRLEWMVQAELVHCRWAMLGAAGILLPEIGNKTGMQSAAPGLAFPHWWEAGKVVA 117
Query: 136 EFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKE--------GSFFGLEAALEGLE 187
E S +L LLMG+AE KR D++ PGSQ GS G+E L E
Sbjct: 118 ESGPWSMGSLTFTMFLLMGWAEHKRLYDFVKPGSQAVGWAWAPLGLGSITGVEEPLVAKE 177
Query: 188 PGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
GYPGG + +P ++K+ + +K E+ NG + +
Sbjct: 178 NGYPGG-IFDPFQMSKNEAKYKWYKQSEVTNGRLAMT 213
>gi|168068456|ref|XP_001786080.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162662173|gb|EDQ49108.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 278
Score = 146 bits (369), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 76/179 (42%), Positives = 106/179 (59%), Gaps = 11/179 (6%)
Query: 54 QQRPTWLPGVDPPPYLDGTLAGDFGFDPLGL------GEDPESLRWYVQAELVHARFAMA 107
+RP W PG P +LDG+L GDFGFDPLGL G DPE+L+W+VQAELVH R+AM
Sbjct: 62 NERPLWFPGSQAPEWLDGSLPGDFGFDPLGLVLRTCAGSDPETLKWFVQAELVHCRWAML 121
Query: 108 GVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISP 167
G AGI + L GI P W AG ++ F TLF+++L+L +AE +R+ D ++P
Sbjct: 122 GAAGIFIPEALTKMGILNTPSWTVAGDADY-FTDKTTLFVIELILFAWAEGRRWADIVNP 180
Query: 168 GSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAK--DIRNAREWKLKEIKNGLICLV 224
G + F L G + GYPGG +PLG + D ++ + +EIKNG + ++
Sbjct: 181 GCVNVDPVF--PNNKLTGTDVGYPGGLWFDPLGWGQTSDAAKLKDLRTREIKNGRLAML 237
>gi|357158365|ref|XP_003578105.1| PREDICTED: chlorophyll a-b binding protein 4, chloroplastic-like
[Brachypodium distachyon]
Length = 246
Score = 146 bits (369), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 80/174 (45%), Positives = 108/174 (62%), Gaps = 8/174 (4%)
Query: 51 VRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVA 110
V Q + WLPG+ P YLDG+LAGD GFDPL L EDP LRW+VQAELV+ R+AM GVA
Sbjct: 43 VAVQAKGQWLPGLASPAYLDGSLAGDNGFDPLALAEDPADLRWFVQAELVNGRWAMLGVA 102
Query: 111 GILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQ 170
G+L +LL G+ P WY+AG E FAS+ TLF+V+ +L + E +R+ D +PGS
Sbjct: 103 GMLIPELLTKAGLLSAPEWYDAGK-ETYFASSSTLFVVEFILFHYVEIRRWQDIKNPGSV 161
Query: 171 TKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
++ F +L + GYPG + NPL A + N K KE+ NG + ++
Sbjct: 162 NQDPIFKSY--SLPDHDCGYPGS-VFNPLNFAPTLEN----KEKELANGRLAML 208
>gi|147795581|emb|CAN69989.1| hypothetical protein VITISV_024400 [Vitis vinifera]
Length = 229
Score = 146 bits (369), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 82/171 (47%), Positives = 104/171 (60%), Gaps = 4/171 (2%)
Query: 55 QRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILF 114
RP W PG PP +LDG+L GDFGFDPLGLG DPE LRW+ QAEL+H+R+AM VAGIL
Sbjct: 23 DRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPELLRWFAQAELMHSRWAMLAVAGILI 82
Query: 115 TDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEG 174
+ L G E WY+AGA EF FA TLF+VQL LMG+ E +R+ D I+PG +
Sbjct: 83 PECLERLGFIENFSWYDAGAQEF-FADPTTLFVVQLALMGWVEGRRWADLINPGCVDIQL 141
Query: 175 SFFGLEAALEGLEPGYPGGPLLNPLGLAK-DIRNAREWKLKEIKNGLICLV 224
+F A + GYPGG +P + + KEIKNG + ++
Sbjct: 142 TF--PNKAKPKPDVGYPGGLWFDPFMWGRGSPEPVMVLRTKEIKNGRLAML 190
>gi|356508545|ref|XP_003523016.1| PREDICTED: chlorophyll a-b binding protein P4, chloroplastic-like
[Glycine max]
Length = 252
Score = 146 bits (368), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 85/202 (42%), Positives = 118/202 (58%), Gaps = 18/202 (8%)
Query: 33 SAFLPAKSGTTRRYL----------ATVVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPL 82
S FL SG R + A+ ++ WLPG+ P YL+GTL GD GFDPL
Sbjct: 20 SRFLTGSSGKLNREVTMRPMGCPPSASFKVEAKKGEWLPGLASPTYLNGTLPGDNGFDPL 79
Query: 83 GLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFAST 142
GL EDPE+LRWYVQAELV+ R+AM GVAG+L ++ GI P WY+AG E+ FAS+
Sbjct: 80 GLAEDPENLRWYVQAELVNGRWAMLGVAGMLLPEVFTKFGIINAPQWYDAGKSEY-FASS 138
Query: 143 RTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLA 202
TLF+++ +L + E +R+ D +PG ++ F + +L E GYPG + NPL A
Sbjct: 139 STLFVIEFILFHYVEIRRWQDIKNPGCVNQDPIF--KQYSLPPHECGYPGS-VFNPLNFA 195
Query: 203 KDIRNAREWKLKEIKNGLICLV 224
+ E K KE+ NG + ++
Sbjct: 196 PTL----EAKEKELANGRLAML 213
>gi|87313171|gb|ABD37882.1| light-harvesting chlorophyll-a/b binding protein Lhca4.2
[Mesostigma viride]
gi|145079732|tpg|DAA05926.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca5 [Mesostigma viride]
Length = 246
Score = 145 bits (367), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 86/204 (42%), Positives = 118/204 (57%), Gaps = 17/204 (8%)
Query: 32 TSAFLPAKSGTTRRYLATVVRAQ----------QRPTWLPGVDPPPYLDGTLAGDFGFDP 81
S FL +K R AT + Q RP W PG+ P YLDG+L GDFG+DP
Sbjct: 11 ASTFLGSKVAPVAR--ATAAKPQAKFAVFAAKADRPLWCPGIPAPSYLDGSLPGDFGYDP 68
Query: 82 LGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKF-A 140
L L P+ L+W VQAEL +AR+AM GVAG+L DLL+ +P WY+A + + A
Sbjct: 69 LSLSNSPDKLKWMVQAELQNARWAMLGVAGMLSVDLLQGILPDNVPQWYDAPLLADVYPA 128
Query: 141 STRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLG 200
++LFI+Q++LMGF E +R+ D +PGS + F + G PGYPGG + +PLG
Sbjct: 129 EWKSLFIIQMILMGFVEARRWADINTPGSANVDPVFNNNKLPDSG-TPGYPGG-MFDPLG 186
Query: 201 LAKDIRNAREWKLKEIKNGLICLV 224
+K N E K KE++NG + +V
Sbjct: 187 FSKG--NLEESKWKELRNGRLAMV 208
>gi|149242541|pdb|2O01|2 Chain 2, The Structure Of A Plant Photosystem I Supercomplex At 3.4
Angstrom Resolution
Length = 186
Score = 145 bits (366), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 78/160 (48%), Positives = 102/160 (63%), Gaps = 4/160 (2%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRE 125
P +LDG+L GDFGFDPLGL DPESLRW VQAELVH+R+AM G AGI + L GI
Sbjct: 1 PEWLDGSLPGDFGFDPLGLSSDPESLRWNVQAELVHSRWAMLGAAGIFIPEFLTKLGILN 60
Query: 126 LPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEG 185
P WY AG E+ F T TLFIV+L+ +G+AE +R+ D ++PG + F L G
Sbjct: 61 TPSWYTAGEQEY-FTDTTTLFIVELVFIGWAEGRRWADILNPGCVNTDPIF--PNNKLTG 117
Query: 186 LEPGYPGGPLLNPLGL-AKDIRNAREWKLKEIKNGLICLV 224
+ GYPGG +PLG + + +E + KEIKNG + ++
Sbjct: 118 TDVGYPGGLWFDPLGWGSASPQKLKELRTKEIKNGRLAML 157
>gi|388513951|gb|AFK45037.1| unknown [Medicago truncatula]
Length = 267
Score = 145 bits (366), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 80/171 (46%), Positives = 104/171 (60%), Gaps = 4/171 (2%)
Query: 55 QRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILF 114
RP W PG PP +LDG+L GDFGFDPLGLG DPE L+W QAEL+HAR+AM GV+GIL
Sbjct: 61 DRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPELLKWLAQAELMHARWAMLGVSGILI 120
Query: 115 TDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEG 174
++L G + WY AG+VE+ FA TLFIVQL LMG+ E +R+ D ++PGS E
Sbjct: 121 PEILEKIGYVKNFSWYNAGSVEY-FADPTTLFIVQLALMGWVEGRRWADIVNPGSVDIEP 179
Query: 175 SFFGLEAALEGLEPGYPGGPLLNPLGLAK-DIRNAREWKLKEIKNGLICLV 224
+ GYPGG +P+ + + KEIKNG + ++
Sbjct: 180 KLPNRPNPKPDV--GYPGGLWFDPMQWGRGSPEPVMVLRTKEIKNGRLAML 228
>gi|374412430|gb|AEZ49173.1| chlorophyll a/b binding protein 4 [Wolffia australiana]
Length = 250
Score = 145 bits (366), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 78/187 (41%), Positives = 115/187 (61%), Gaps = 8/187 (4%)
Query: 38 AKSGTTRRYLATVVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQA 97
+++ + R + + ++ WLPG+ P YL+G+L GD GFDPLGL EDPE+L+W+VQA
Sbjct: 34 SRNPSASRAVPAFRVSAKKGEWLPGLASPDYLNGSLPGDNGFDPLGLAEDPENLKWFVQA 93
Query: 98 ELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAE 157
EL + R+AM GVAG+L ++ GI P WY+AG E+ FAS+ TLF+++ +L + E
Sbjct: 94 ELQNGRWAMLGVAGMLLPEVFTKIGIINAPQWYDAGKQEY-FASSSTLFVIEFILFHYVE 152
Query: 158 TKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIK 217
+R+ D +PGS ++ F L E GYPGG + NPL A + E K KEI
Sbjct: 153 IRRWQDIKNPGSVNQDPIFKSYR--LPPNEVGYPGG-IFNPLNFAPSL----EAKEKEIA 205
Query: 218 NGLICLV 224
NG + ++
Sbjct: 206 NGRLAML 212
>gi|414590634|tpg|DAA41205.1| TPA: hypothetical protein ZEAMMB73_510089 [Zea mays]
gi|414590635|tpg|DAA41206.1| TPA: hypothetical protein ZEAMMB73_510089 [Zea mays]
Length = 196
Score = 145 bits (365), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 74/144 (51%), Positives = 91/144 (63%), Gaps = 3/144 (2%)
Query: 55 QRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILF 114
RP W PG PPP+LDG+L GDFGFDP GLG DPESLRW VQAELVH R+AM G AGI
Sbjct: 54 NRPIWFPGSTPPPWLDGSLPGDFGFDPWGLGSDPESLRWNVQAELVHCRWAMLGAAGIFI 113
Query: 115 TDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEG 174
+ L G+ P WY AG ++ F T TLFI++L+L+G+AE +R+ D I PGS +
Sbjct: 114 PEFLTKIGVLNTPFWYTAGEQQY-FTDTTTLFIIELILIGWAEGRRWADIIKPGSVNTDP 172
Query: 175 SFFGLEAALEGLEPGYPGGPLLNP 198
F L G + GY L +P
Sbjct: 173 IF--PSNKLTGTDVGYSSFLLHDP 194
>gi|414590633|tpg|DAA41204.1| TPA: hypothetical protein ZEAMMB73_510089 [Zea mays]
Length = 199
Score = 144 bits (364), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 68/122 (55%), Positives = 83/122 (68%), Gaps = 1/122 (0%)
Query: 55 QRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILF 114
RP W PG PPP+LDG+L GDFGFDP GLG DPESLRW VQAELVH R+AM G AGI
Sbjct: 54 NRPIWFPGSTPPPWLDGSLPGDFGFDPWGLGSDPESLRWNVQAELVHCRWAMLGAAGIFI 113
Query: 115 TDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEG 174
+ L G+ P WY AG ++ F T TLFI++L+L+G+AE +R+ D I PGS +
Sbjct: 114 PEFLTKIGVLNTPFWYTAGEQQY-FTDTTTLFIIELILIGWAEGRRWADIIKPGSVNTDP 172
Query: 175 SF 176
F
Sbjct: 173 IF 174
>gi|145350546|ref|XP_001419664.1| chlorophyll a/b binding, possibly photosystem I light harvesting
complex [Ostreococcus lucimarinus CCE9901]
gi|144579896|gb|ABO97957.1| chlorophyll a/b binding, possibly photosystem I light harvesting
complex [Ostreococcus lucimarinus CCE9901]
Length = 235
Score = 144 bits (364), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 79/186 (42%), Positives = 110/186 (59%), Gaps = 4/186 (2%)
Query: 39 KSGTTRRYLATVVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAE 98
K+ +R +A A RP W PG P +LDG+L GD+GFDPL L DPE +W VQAE
Sbjct: 20 KTRASRGPVAVSANAD-RPVWYPGKAPAAHLDGSLPGDYGFDPLSLSADPEMRQWMVQAE 78
Query: 99 LVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAET 158
L HAR+AM GVAG + +LL G+ +LP W +A ++ +A TLF +Q+ + +AE
Sbjct: 79 LQHARWAMLGVAGCVAPELLTKIGVADLPNWVDAATYQY-WAPGGTLFFIQMAMFNWAEI 137
Query: 159 KRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKN 218
+R+ D +PGS + FG + + GYP G L + G AKD + E KLKEIKN
Sbjct: 138 RRWQDMKNPGSVNTD-PLFGYNSNDTNTDVGYPKG-LFDKFGWAKDEKTTAELKLKEIKN 195
Query: 219 GLICLV 224
G + ++
Sbjct: 196 GRLAML 201
>gi|33438474|emb|CAE30280.1| chlorophyll a /b binding protein [Beta vulgaris]
Length = 252
Score = 144 bits (364), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 80/189 (42%), Positives = 117/189 (61%), Gaps = 13/189 (6%)
Query: 36 LPAKSGTTRRYLATVVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYV 95
LP+ S T ++ ++ WLPG+ P YL+G+L GD GFDPL L EDPE+L+W+V
Sbjct: 38 LPSTSSTN-----SLKVEAKKGEWLPGLASPAYLNGSLPGDNGFDPLALAEDPENLKWFV 92
Query: 96 QAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGF 155
QAELV+ R+AM GVAG+L ++ GI +P WY+AG E+ FAS+ TLF+++ +L +
Sbjct: 93 QAELVNGRWAMLGVAGMLLPEVFTQIGIINVPKWYDAGKQEY-FASSSTLFVIEFILFHY 151
Query: 156 AETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKE 215
E +R+ D +PGS ++ F + +L E GYPGG + NPL A E K KE
Sbjct: 152 VEIRRWQDIKNPGSVNQDPIF--KQYSLPPNEVGYPGG-IFNPLNFAP----TAEAKEKE 204
Query: 216 IKNGLICLV 224
+ NG + ++
Sbjct: 205 LANGRLAML 213
>gi|72580631|gb|AAR19267.2| chlorophyll a/b binding protein presusor [Oryza sativa Japonica
Group]
Length = 244
Score = 144 bits (364), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 85/205 (41%), Positives = 122/205 (59%), Gaps = 18/205 (8%)
Query: 26 KSSIGITSAFLP------AKSGTTRRYLATVVRAQQRPTWLPGVDPPPYLDGTLAGDFGF 79
+SS + S FL A++ TTRR VRA+ + WLPG+ P YL+G+L GD GF
Sbjct: 14 RSSASLKSTFLGQSSTRLARAPTTRRN----VRAEAKGEWLPGLPSPTYLNGSLPGDNGF 69
Query: 80 DPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKF 139
DPLGL EDPE+LRW+VQAELV+ R+AM GVAG+L ++L G+ + P WY+AG + F
Sbjct: 70 DPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVLTKIGLIDAPQWYDAGKATY-F 128
Query: 140 ASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPL 199
AS+ TLF+++ +L + E +R+ D +PG ++ F +L E GYP PL
Sbjct: 129 ASSSTLFVIEFILFHYVEIRRWQDIKNPGCVNQDPIFKSY--SLPPHECGYPAAS-STPL 185
Query: 200 GLAKDIRNAREWKLKEIKNGLICLV 224
+ E K KE+ NG + ++
Sbjct: 186 NFEPTL----EAKEKELANGRLAML 206
>gi|20218813|emb|CAC84491.1| putative chlorophyll a/b-binding protein type 4 [Pinus pinaster]
Length = 251
Score = 144 bits (363), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 77/177 (43%), Positives = 111/177 (62%), Gaps = 8/177 (4%)
Query: 48 ATVVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMA 107
A + + + WLPG+ P YL+G+L GD G DPLGL EDPESL+WYVQAELV+ R+AM
Sbjct: 44 ARSFKVEAKGEWLPGLSSPSYLNGSLPGDNGXDPLGLAEDPESLKWYVQAELVNGRWAML 103
Query: 108 GVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISP 167
GVAG+ ++L G+ +P WY+AG VE+ FAS+ TLF+++ +L + E +R+ D P
Sbjct: 104 GVAGMXIPEVLTSIGLINVPKWYDAGKVEY-FASSXTLFVIEFILFHYVELRRWQDIKYP 162
Query: 168 GSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
GS ++ +L E GYPGG + NPL + + E K KE+ NG + ++
Sbjct: 163 GSVNQDP--IXKSYSLPPNEVGYPGG-IFNPLNFSPSM----EAKEKELANGRLAML 212
>gi|255550389|ref|XP_002516245.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223544731|gb|EEF46247.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 297
Score = 144 bits (363), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 84/190 (44%), Positives = 110/190 (57%), Gaps = 6/190 (3%)
Query: 38 AKSGTTRRYLATVVRA--QQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYV 95
K T+ ++TV RP W PG PP +LDG+L GDFGFDPLGLG DPE L+W+
Sbjct: 72 VKLNATKGGVSTVCEPLPPDRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPELLKWFA 131
Query: 96 QAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGF 155
QAEL+H+R+AM VAGIL + L G E W++AGA E+ FA TLFIVQL+LMG+
Sbjct: 132 QAELMHSRWAMLAVAGILIPEWLESLGFIENYNWFDAGAREY-FADPTTLFIVQLVLMGW 190
Query: 156 AETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAK-DIRNAREWKLK 214
E +R+ D I PG E + + GYPGG +PL + + K
Sbjct: 191 VEGRRWADMIKPGCVDIEPTLPNKTKPKPDV--GYPGGLWFDPLMWGRGSPEPVMVLRTK 248
Query: 215 EIKNGLICLV 224
EIKNG + ++
Sbjct: 249 EIKNGRLAML 258
>gi|357450129|ref|XP_003595341.1| Chlorophyll a-b binding protein [Medicago truncatula]
gi|355484389|gb|AES65592.1| Chlorophyll a-b binding protein [Medicago truncatula]
Length = 267
Score = 144 bits (362), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 79/171 (46%), Positives = 104/171 (60%), Gaps = 4/171 (2%)
Query: 55 QRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILF 114
RP W PG PP +LDG+L G+FGFDPLGLG DPE L+W QAEL+HAR+AM GV+GIL
Sbjct: 61 DRPLWFPGSSPPEWLDGSLPGNFGFDPLGLGSDPELLKWLAQAELMHARWAMLGVSGILI 120
Query: 115 TDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEG 174
++L G + WY AG+VE+ FA TLFIVQL LMG+ E +R+ D ++PGS E
Sbjct: 121 PEILEKIGYVKNFSWYNAGSVEY-FADPTTLFIVQLALMGWVEGRRWADIVNPGSVDIEP 179
Query: 175 SFFGLEAALEGLEPGYPGGPLLNPLGLAK-DIRNAREWKLKEIKNGLICLV 224
+ GYPGG +P+ + + KEIKNG + ++
Sbjct: 180 KLPNRPNPKPDV--GYPGGLWFDPMQWGRGSPEPVMVLRTKEIKNGRLAML 228
>gi|398313945|emb|CCI55399.1| PSI antenna protein Lhca4 [Marchantia polymorpha]
Length = 249
Score = 144 bits (362), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 76/170 (44%), Positives = 110/170 (64%), Gaps = 8/170 (4%)
Query: 55 QRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILF 114
++ WLPG+ P YL+G+LAGD GFDPLGL EDP +L WYVQAEL + R+AM GVAG+L
Sbjct: 50 KKGEWLPGLPSPAYLNGSLAGDNGFDPLGLAEDPAALNWYVQAELQNGRWAMLGVAGMLV 109
Query: 115 TDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEG 174
++L G+ P+WY+AG VE+ FA TLF+++ +L + E +R+ D PGS +++
Sbjct: 110 PEVLTKIGLINAPLWYDAGKVEY-FAPASTLFVIEFILFHYVEIRRWQDIKYPGSVSQDP 168
Query: 175 SFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
F + L + GYPGG + NPL + +E+K KEI NG + ++
Sbjct: 169 FFKSYK--LPPGDVGYPGG-IFNPLKFPAN----QEYKEKEIANGRLAML 211
>gi|575349|emb|CAA57877.1| light-harvesting chlorophyll a /b binding protein [Nicotiana
tabacum]
Length = 200
Score = 144 bits (362), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 78/170 (45%), Positives = 108/170 (63%), Gaps = 8/170 (4%)
Query: 55 QRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILF 114
++ WLPG+ P YLDG+L GD GF PLGL EDPE+L+W+VQAELV+ R+AM GVAG+L
Sbjct: 1 KKGQWLPGLASPTYLDGSLPGDXGFAPLGLAEDPENLKWFVQAELVNVRWAMLGVAGMLL 60
Query: 115 TDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEG 174
++ GI +P WY+AG E+ FAS+ TLF+++ +L + E +R+ D +PGS +
Sbjct: 61 PEVFTNIGILNVPKWYDAGKEEY-FASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQXP 119
Query: 175 SFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
F +L E GYPGG + NPL A E K KEI NG + ++
Sbjct: 120 IF--KNYSLPPNEVGYPGG-IFNPLNFAP----TAEAKEKEIANGRLAML 162
>gi|388498024|gb|AFK37078.1| unknown [Lotus japonicus]
Length = 252
Score = 143 bits (361), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 82/202 (40%), Positives = 121/202 (59%), Gaps = 18/202 (8%)
Query: 33 SAFLPAKSGTTRRYLA---------TVVRAQ-QRPTWLPGVDPPPYLDGTLAGDFGFDPL 82
S FL SG R +A T + + ++ WLPG+ P YL+G+L GD GFDPL
Sbjct: 20 SRFLTGSSGKLNREVAFRPMGCPPSTSFKVEAKKGEWLPGLASPNYLNGSLPGDNGFDPL 79
Query: 83 GLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFAST 142
L EDPE+L+W+VQAELV+ R+A GVAG+L ++L G+ +P WY+AG E+ FAS+
Sbjct: 80 ALAEDPENLKWFVQAELVNGRWATLGVAGMLLPEVLTNIGLINVPKWYDAGKAEY-FASS 138
Query: 143 RTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLA 202
TLF+++ +L + E +R+ D +PGS ++ F + +L E GYPGG + NPL A
Sbjct: 139 STLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIF--KQYSLPPNEVGYPGG-IFNPLNFA 195
Query: 203 KDIRNAREWKLKEIKNGLICLV 224
E K +E+ NG + ++
Sbjct: 196 P----TEEAKERELANGRLAML 213
>gi|115479363|ref|NP_001063275.1| Os09g0439500 [Oryza sativa Japonica Group]
gi|51091350|dbj|BAD36085.1| putative chlorophyll a/b-binding protein type II [Oryza sativa
Japonica Group]
gi|51091400|dbj|BAD36143.1| putative chlorophyll a/b-binding protein type II [Oryza sativa
Japonica Group]
gi|113631508|dbj|BAF25189.1| Os09g0439500 [Oryza sativa Japonica Group]
gi|215695401|dbj|BAG90592.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 264
Score = 142 bits (359), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 82/192 (42%), Positives = 113/192 (58%), Gaps = 12/192 (6%)
Query: 39 KSGTTRRYLATVVR--AQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQ 96
++G T+ ++ V RP W PG PPP+LDG+L GDFGFDPLGLG DPE LRW+ Q
Sbjct: 40 RAGATKGGVSAVCEPLGPDRPLWFPGSSPPPWLDGSLPGDFGFDPLGLGSDPELLRWFAQ 99
Query: 97 AELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFA 156
AEL+H+R+AM VAGIL ++L G E W +AGA ++ FA TLF+ Q+ LMG+A
Sbjct: 100 AELMHSRWAMLAVAGILVPEVLEKWGFMEDYSWIDAGARDY-FADPWTLFVSQMALMGWA 158
Query: 157 ETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE----WK 212
E +R+ DY++PG E + + GYPGG + R + E +
Sbjct: 159 EGRRWADYLNPGCVAVEPRLPNRRNPVPDV--GYPGGLWFD---WGNWGRGSPEPVMVLR 213
Query: 213 LKEIKNGLICLV 224
KEIKNG + ++
Sbjct: 214 TKEIKNGRLAML 225
>gi|449500520|ref|XP_004161120.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
[Cucumis sativus]
Length = 267
Score = 142 bits (359), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 75/171 (43%), Positives = 105/171 (61%), Gaps = 4/171 (2%)
Query: 55 QRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILF 114
RP W PG PP +LDG+L GDFGFDPLGLG DPE+L+W+ QAEL+HAR+AM VAGIL
Sbjct: 59 DRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPETLKWFAQAELMHARWAMLAVAGILL 118
Query: 115 TDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEG 174
+ G+ + WY+AG+ E+ FA TL + QL LMG+ E +R+ D ++PGS +
Sbjct: 119 PEWFESLGLIQNFSWYDAGSREY-FADPTTLLVAQLALMGWVEGRRWADLVNPGSVDVDL 177
Query: 175 SFFGLEAALEGLEPGYPGGPLLNPLGLAK-DIRNAREWKLKEIKNGLICLV 224
+ A+ + GYPGG +P+ + + KEIKNG + ++
Sbjct: 178 KLPHKKKAMADV--GYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAML 226
>gi|302787172|ref|XP_002975356.1| light-harvesting complex [Selaginella moellendorffii]
gi|300156930|gb|EFJ23557.1| light-harvesting complex [Selaginella moellendorffii]
Length = 248
Score = 142 bits (358), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 83/211 (39%), Positives = 121/211 (57%), Gaps = 20/211 (9%)
Query: 26 KSSIGIT--SAFLPAKSGTTRRYLATVVRAQ----------QRPTWLPGVDPPPYLDGTL 73
++SIG++ S FL S +R V ++ W PG+ P YL+G+L
Sbjct: 7 QASIGVSCPSTFLSGSSSKLQRGSRAVAAPSFATGKFKVEAKKGEWCPGLASPGYLNGSL 66
Query: 74 AGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAG 133
GD GFDPLGL DP +L+WYVQAEL + R+AM GVAG+L ++L G+ P+WY+AG
Sbjct: 67 PGDNGFDPLGLAGDPANLKWYVQAELQNGRWAMVGVAGMLIPEVLTKIGVINAPLWYDAG 126
Query: 134 AVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGG 193
VE+ FA TLF+++ L+ + E +R+ D PGS ++ F G +L E GYPGG
Sbjct: 127 KVEY-FAPASTLFVIEFLMFHYVEVRRWQDIKYPGSVNQDPIFKGY--SLPPNEVGYPGG 183
Query: 194 PLLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
+ NPL + E+K KE+ NG + ++
Sbjct: 184 -IFNPLNFPAN----EEYKEKELANGRLAML 209
>gi|145343493|ref|XP_001416356.1| Photosystem I light harvesting complex, chlorophyll a/b binding
[Ostreococcus lucimarinus CCE9901]
gi|144576581|gb|ABO94649.1| Photosystem I light harvesting complex, chlorophyll a/b binding
[Ostreococcus lucimarinus CCE9901]
Length = 203
Score = 142 bits (357), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 77/166 (46%), Positives = 103/166 (62%), Gaps = 4/166 (2%)
Query: 59 WLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLL 118
W+PG P +L L GD+GFDPL LG+DPE L+WYVQAEL H R+AM GVAG ++L
Sbjct: 2 WMPGATAPAHLKNELPGDYGFDPLELGKDPEDLKWYVQAELQHGRWAMLGVAGAAAPEIL 61
Query: 119 RVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFG 178
GI LP W+EA + + F TLF VQ+L+M +AE +R+ D PGS +++ + F
Sbjct: 62 TNMGISNLPNWHEAPSYDGYFTDATTLFWVQMLMMNWAEVRRWQDIRKPGSVSEDPTPFS 121
Query: 179 LEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
A L GYPGG + +PLG AK + + K KEI NG + +V
Sbjct: 122 -NAKLPAGVVGYPGG-IFDPLGYAKG--DLKTLKAKEIANGRLAMV 163
>gi|302762032|ref|XP_002964438.1| light-harvesting complex [Selaginella moellendorffii]
gi|300168167|gb|EFJ34771.1| light-harvesting complex [Selaginella moellendorffii]
Length = 248
Score = 141 bits (356), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 83/211 (39%), Positives = 121/211 (57%), Gaps = 20/211 (9%)
Query: 26 KSSIGIT--SAFLPAKSGTTRRYLATVVRAQ----------QRPTWLPGVDPPPYLDGTL 73
++SIG++ S FL S +R V ++ W PG+ P YL+G+L
Sbjct: 7 QASIGVSCPSTFLSRSSSKLQRGSRAVAAPSFATGKFKVEAKKGEWCPGLASPGYLNGSL 66
Query: 74 AGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAG 133
GD GFDPLGL DP +L+WYVQAEL + R+AM GVAG+L ++L G+ P+WY+AG
Sbjct: 67 PGDNGFDPLGLAGDPANLKWYVQAELQNGRWAMVGVAGMLIPEVLTKIGVINAPLWYDAG 126
Query: 134 AVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGG 193
VE+ FA TLF+++ L+ + E +R+ D PGS ++ F G +L E GYPGG
Sbjct: 127 KVEY-FAPASTLFVIEFLMFHYVEVRRWQDIKYPGSVNQDPIFKGY--SLPPNEVGYPGG 183
Query: 194 PLLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
+ NPL + E+K KE+ NG + ++
Sbjct: 184 -IFNPLNFPAN----EEYKEKELANGRLAML 209
>gi|125605837|gb|EAZ44873.1| hypothetical protein OsJ_29513 [Oryza sativa Japonica Group]
Length = 241
Score = 141 bits (356), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 74/157 (47%), Positives = 99/157 (63%), Gaps = 5/157 (3%)
Query: 39 KSGTTRRYLATVVR--AQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQ 96
++G T+ ++ V RP W PG PPP+LDG+L GDFGFDPLGLG DPE LRW+ Q
Sbjct: 5 RAGATKGGVSAVCEPLGPDRPLWFPGSSPPPWLDGSLPGDFGFDPLGLGSDPELLRWFAQ 64
Query: 97 AELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFA 156
AEL+H+R+AM VAGIL ++L G E W +AGA ++ FA TLF+ Q+ LMG+A
Sbjct: 65 AELMHSRWAMLAVAGILVPEVLEKWGFMEDYSWIDAGARDY-FADPWTLFVSQMALMGWA 123
Query: 157 ETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGG 193
E +R+ DY++PG E + + GYPGG
Sbjct: 124 EGRRWADYLNPGCVAVEPRLPNRRNPVPDV--GYPGG 158
>gi|357495587|ref|XP_003618082.1| Chlorophyll a-b binding protein [Medicago truncatula]
gi|355519417|gb|AET01041.1| Chlorophyll a-b binding protein [Medicago truncatula]
Length = 557
Score = 141 bits (356), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 92/237 (38%), Positives = 129/237 (54%), Gaps = 32/237 (13%)
Query: 14 SSSSSFICNDVNKSSIGITSAFLPAKSGTTRRYLATVVRAQQRPT----------WLPGV 63
SSSS + + S G S LP+ G++R+ + VV+A P W
Sbjct: 8 SSSSLTFAAEAVRQSFGARS--LPSSIGSSRKG-SFVVKAASSPPVKQNGANRQLWFASK 64
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESL------RWYVQAELVHARFAMAGVAGILFTDL 117
YLDG+L GDFGFDPLGL DPE RW E+++ RFAM G AG + ++
Sbjct: 65 QSLSYLDGSLPGDFGFDPLGL-SDPEGTGGFIEPRWLAYGEIINGRFAMLGAAGAIAPEI 123
Query: 118 LRVTGI----RELPVWYEAGAVE-----FKFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
L G+ LP W++ G + +A TLF++++ MGFAE +R+ D+ +PG
Sbjct: 124 LGKAGLIPAETALP-WFQTGVIPPAGTYNYWADNYTLFVMEMAFMGFAEHRRFQDWYNPG 182
Query: 169 SQTKEGSFFGLEAALEGL-EPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
S K+ F GLE L G EP YPGGP+ NPLG KD ++ +E KLKE+KNG + ++
Sbjct: 183 SMGKQ-YFLGLEKGLGGSGEPAYPGGPIFNPLGFGKDEKSLKELKLKEVKNGRLAML 238
Score = 139 bits (349), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 91/235 (38%), Positives = 128/235 (54%), Gaps = 30/235 (12%)
Query: 14 SSSSSFICNDVNKSSIGITSAFLPAKSGTTRRYLATVVRAQ--------QRPTWLPGVDP 65
SSSS + + S G S LP+ G++R+ + VV+A R W
Sbjct: 290 SSSSLTFAAEAVRQSFGARS--LPSSIGSSRKG-SFVVKAAAPVKKGGANRQLWFASKQS 346
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESL------RWYVQAELVHARFAMAGVAGILFTDLLR 119
YLDG+L GDFGFDPLGL DPE + W E+++ RFAM G AG + ++L
Sbjct: 347 LSYLDGSLPGDFGFDPLGL-SDPEGVGGFIEPEWLAYGEIINGRFAMLGAAGAIAPEILG 405
Query: 120 VTGI----RELPVWYEAGAVE-----FKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQ 170
G+ LP W++ G + +A TLF++++ MGFAE +R D+ +PGS
Sbjct: 406 KAGLIPAETALP-WFQTGVIPPAGTYNYWADNYTLFVMEMAFMGFAEHRRLQDWYNPGSM 464
Query: 171 TKEGSFFGLEAALEGL-EPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
K+ F GLE L G EP YPGGP+ NPLG KD ++ +E KLKE+KNG + ++
Sbjct: 465 GKQ-YFLGLEKGLGGSGEPAYPGGPIFNPLGFGKDEKSLKELKLKEVKNGRLAML 518
>gi|356556398|ref|XP_003546513.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
[Glycine max]
Length = 260
Score = 141 bits (356), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 82/192 (42%), Positives = 109/192 (56%), Gaps = 13/192 (6%)
Query: 43 TRRYLATVVRA---------QQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRW 93
TRR +A + RP W PG PP +LDG+L GDFGFDPLGLG DPE L+W
Sbjct: 34 TRRTVAYATKGVSAVCEPLPPDRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPELLKW 93
Query: 94 YVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLM 153
+ QAEL+HAR+AM V GIL +LL G E WY+AGA E+ F TLF+VQ+ LM
Sbjct: 94 FAQAELMHARWAMLAVFGILVPELLEKIGYIENFSWYDAGAREY-FVDPTTLFVVQMGLM 152
Query: 154 GFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAK-DIRNAREWK 212
G+ E +R+ D ++PGS E + + GYPGG +P+ + +
Sbjct: 153 GWVEGRRWADMVNPGSVDIEPKVPHITNPKPDV--GYPGGLWFDPMMWGRGSPEPVMVLR 210
Query: 213 LKEIKNGLICLV 224
KEIKNG + ++
Sbjct: 211 TKEIKNGRLAML 222
>gi|388515199|gb|AFK45661.1| unknown [Medicago truncatula]
Length = 277
Score = 141 bits (356), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 92/237 (38%), Positives = 129/237 (54%), Gaps = 32/237 (13%)
Query: 14 SSSSSFICNDVNKSSIGITSAFLPAKSGTTRRYLATVVRAQQRPT----------WLPGV 63
SSSS + + S G S LP+ G++R+ + VV+A P W
Sbjct: 8 SSSSLTFAAEAVRQSFGARS--LPSSIGSSRKG-SFVVKAASSPPVKQNGANRQLWFASK 64
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESL------RWYVQAELVHARFAMAGVAGILFTDL 117
YLDG+L GDFGFDPLGL DPE RW E+++ RFAM G AG + ++
Sbjct: 65 QSLSYLDGSLPGDFGFDPLGL-SDPEGTGGFIEPRWLAYGEIINGRFAMLGAAGAIAPEI 123
Query: 118 LRVTGI----RELPVWYEAGAVE-----FKFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
L G+ LP W++ G + +A TLF++++ MGFAE +R+ D+ +PG
Sbjct: 124 LGKAGLIPAETALP-WFQTGVIPPAGTYNYWADNYTLFVMEMAFMGFAEHRRFQDWYNPG 182
Query: 169 SQTKEGSFFGLEAALEGL-EPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
S K+ F GLE L G EP YPGGP+ NPLG KD ++ +E KLKE+KNG + ++
Sbjct: 183 SMGKQ-YFLGLEKGLGGSGEPAYPGGPIFNPLGFGKDEKSLKELKLKEVKNGRLAML 238
>gi|388505428|gb|AFK40780.1| unknown [Medicago truncatula]
Length = 230
Score = 141 bits (355), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 74/145 (51%), Positives = 93/145 (64%), Gaps = 3/145 (2%)
Query: 55 QRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILF 114
RP W PG PP +LDG+L GDFGFDPLGLG DPE L+W QAEL+HAR+AM GV+GIL
Sbjct: 61 DRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPELLKWLAQAELMHARWAMLGVSGILI 120
Query: 115 TDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEG 174
++L G + WY AG+VE+ FA TLFIVQL LMG+ E +R+ D ++PGS E
Sbjct: 121 PEILEKIGYVKNFSWYNAGSVEY-FADPTTLFIVQLALMGWVEGRRWADIVNPGSVDIEP 179
Query: 175 SFFGLEAALEGLEPGYPGGPLLNPL 199
+ GYPGG +P+
Sbjct: 180 KLPNRPNPKPDV--GYPGGLWFDPM 202
>gi|297844880|ref|XP_002890321.1| hypothetical protein ARALYDRAFT_472139 [Arabidopsis lyrata subsp.
lyrata]
gi|297336163|gb|EFH66580.1| hypothetical protein ARALYDRAFT_472139 [Arabidopsis lyrata subsp.
lyrata]
Length = 269
Score = 141 bits (355), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 76/171 (44%), Positives = 104/171 (60%), Gaps = 4/171 (2%)
Query: 55 QRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILF 114
RP W PG PP +LDG+L GDFGFDPLGLG DP++L+W+ QAEL+H+R+AM V GIL
Sbjct: 63 DRPLWFPGSAPPEWLDGSLPGDFGFDPLGLGSDPDTLKWFAQAELIHSRWAMLAVTGILI 122
Query: 115 TDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEG 174
+ L G E WYEAG+ E+ FA + TLF+ Q++LMG+AE +R+ D I PGS E
Sbjct: 123 PECLERLGFIENFSWYEAGSREY-FADSTTLFVAQMVLMGWAEGRRWADLIKPGSVDIEP 181
Query: 175 SFFGLEAALEGLEPGYPGGPLLNPLGLAK-DIRNAREWKLKEIKNGLICLV 224
+ + GYPGG + + + + KEIKNG + ++
Sbjct: 182 KY--PHKVNPKPDVGYPGGLWFDFMMWGRGSPEPVMVLRTKEIKNGRLAML 230
>gi|449452592|ref|XP_004144043.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
[Cucumis sativus]
Length = 267
Score = 141 bits (355), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 75/171 (43%), Positives = 104/171 (60%), Gaps = 4/171 (2%)
Query: 55 QRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILF 114
RP W PG PP +LDG+L GDFGFDPLGLG DPE+L+W+ QAEL+HAR+AM VAGIL
Sbjct: 59 DRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPETLKWFAQAELMHARWAMLAVAGILL 118
Query: 115 TDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEG 174
+ G+ + WY+AG+ E+ FA TL + QL LMG+ E +R+ D ++PGS +
Sbjct: 119 PEWFESLGLIQNFSWYDAGSREY-FADPTTLLVAQLALMGWVEGRRWADLVNPGSVDVDL 177
Query: 175 SFFGLEAALEGLEPGYPGGPLLNPLGLAK-DIRNAREWKLKEIKNGLICLV 224
+ A + GYPGG +P+ + + KEIKNG + ++
Sbjct: 178 KLPHKKKAKADV--GYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAML 226
>gi|218202214|gb|EEC84641.1| hypothetical protein OsI_31519 [Oryza sativa Indica Group]
Length = 264
Score = 141 bits (355), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 81/192 (42%), Positives = 112/192 (58%), Gaps = 12/192 (6%)
Query: 39 KSGTTRRYLATVVR--AQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQ 96
++G T+ ++ V RP W PG PPP+LDG+L GDFGFDPLGLG DPE LRW+ Q
Sbjct: 40 RAGATKGGVSAVCEPLGPDRPLWFPGSSPPPWLDGSLPGDFGFDPLGLGSDPELLRWFAQ 99
Query: 97 AELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFA 156
AEL+H+R+AM AGIL ++L G E W +AGA ++ FA TLF+ Q+ LMG+A
Sbjct: 100 AELMHSRWAMLAAAGILVPEVLEKWGFMEDYSWIDAGARDY-FADPWTLFVSQMALMGWA 158
Query: 157 ETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE----WK 212
E +R+ DY++PG E + + GYPGG + R + E +
Sbjct: 159 EGRRWADYLNPGCVAVEPRLPNRRNPVPDV--GYPGGLWFD---WGNWGRGSPEPVMVLR 213
Query: 213 LKEIKNGLICLV 224
KEIKNG + ++
Sbjct: 214 TKEIKNGRLAML 225
>gi|357495589|ref|XP_003618083.1| Chlorophyll a-b binding protein [Medicago truncatula]
gi|355519418|gb|AET01042.1| Chlorophyll a-b binding protein [Medicago truncatula]
Length = 573
Score = 141 bits (355), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 92/237 (38%), Positives = 129/237 (54%), Gaps = 32/237 (13%)
Query: 14 SSSSSFICNDVNKSSIGITSAFLPAKSGTTRRYLATVVRAQQRPT----------WLPGV 63
SSSS + + S G S LP+ G++R+ + VV+A P W
Sbjct: 8 SSSSLTFAAEAVRQSFGARS--LPSSIGSSRKG-SFVVKAASSPPVKQNGANRQLWFASK 64
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESL------RWYVQAELVHARFAMAGVAGILFTDL 117
YLDG+L GDFGFDPLGL DPE RW E+++ RFAM G AG + ++
Sbjct: 65 QSLSYLDGSLPGDFGFDPLGL-SDPEGTGGFIEPRWLAYGEIINGRFAMLGAAGAIAPEI 123
Query: 118 LRVTGI----RELPVWYEAGAVE-----FKFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
L G+ LP W++ G + +A TLF++++ MGFAE +R+ D+ +PG
Sbjct: 124 LGKAGLIPAETALP-WFQTGVIPPAGTYNYWADNYTLFVMEMAFMGFAEHRRFQDWYNPG 182
Query: 169 SQTKEGSFFGLEAALEGL-EPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
S K+ F GLE L G EP YPGGP+ NPLG KD ++ +E KLKE+KNG + ++
Sbjct: 183 SMGKQ-YFLGLEKGLGGSGEPAYPGGPIFNPLGFGKDEKSLKELKLKEVKNGRLAML 238
Score = 138 bits (347), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 91/235 (38%), Positives = 128/235 (54%), Gaps = 30/235 (12%)
Query: 14 SSSSSFICNDVNKSSIGITSAFLPAKSGTTRRYLATVVRAQ--------QRPTWLPGVDP 65
SSSS + + S G S LP+ G++R+ + VV+A R W
Sbjct: 306 SSSSLTFAAEAVRQSFGARS--LPSSIGSSRKG-SFVVKAAAPVKKGGANRQLWFASKQS 362
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESL------RWYVQAELVHARFAMAGVAGILFTDLLR 119
YLDG+L GDFGFDPLGL DPE + W E+++ RFAM G AG + ++L
Sbjct: 363 LSYLDGSLPGDFGFDPLGL-SDPEGVGGFIEPEWLAYGEIINGRFAMLGAAGAIAPEILG 421
Query: 120 VTGI----RELPVWYEAGAVE-----FKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQ 170
G+ LP W++ G + +A TLF++++ MGFAE +R D+ +PGS
Sbjct: 422 KAGLIPAETALP-WFQTGVIPPAGTYNYWADNYTLFVMEMAFMGFAEHRRLQDWYNPGSM 480
Query: 171 TKEGSFFGLEAALEGL-EPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
K+ F GLE L G EP YPGGP+ NPLG KD ++ +E KLKE+KNG + ++
Sbjct: 481 GKQ-YFLGLEKGLGGSGEPAYPGGPIFNPLGFGKDEKSLKELKLKEVKNGRLAML 534
>gi|414589583|tpg|DAA40154.1| TPA: hypothetical protein ZEAMMB73_160322 [Zea mays]
gi|414589584|tpg|DAA40155.1| TPA: hypothetical protein ZEAMMB73_160322 [Zea mays]
Length = 271
Score = 140 bits (353), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 83/193 (43%), Positives = 114/193 (59%), Gaps = 13/193 (6%)
Query: 39 KSGTTRRYLATVVR--AQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQ 96
++ T+ ++TV RP W PG PPP+LDG+L GDFGFDPLGLG +PE LRW+ Q
Sbjct: 46 RANATKGGVSTVCEPLGPDRPIWFPGSSPPPWLDGSLPGDFGFDPLGLGSEPELLRWFAQ 105
Query: 97 AELVHARFAMAGVAGILFTDLLRVTGIRELPV-WYEAGAVEFKFASTRTLFIVQLLLMGF 155
AEL+H R+AM AGIL DLL G + W++AG+ E+ FA TLF+ Q+ LMG+
Sbjct: 106 AELMHGRWAMLAAAGILVPDLLARWGFIDAGFSWFDAGSREY-FADPWTLFVSQMALMGW 164
Query: 156 AETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE----W 211
AE +R+ DY+ PG E F + + + GYPGG + A R + E
Sbjct: 165 AEGRRWADYLRPGCVDIEPRFPNRKNPVPDV--GYPGGLWFD---WANWGRGSPEPVMVL 219
Query: 212 KLKEIKNGLICLV 224
+ KEIKNG + ++
Sbjct: 220 RTKEIKNGRLAML 232
>gi|27754356|gb|AAO22627.1| putative light-harvesting chlorophyll a/b binding protein
[Arabidopsis thaliana]
Length = 270
Score = 140 bits (352), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 74/171 (43%), Positives = 104/171 (60%), Gaps = 4/171 (2%)
Query: 55 QRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILF 114
RP W PG PP +LDG+L GDFGFDPLGLG DP++L+W+ QAEL+H+R+AM V GI+
Sbjct: 64 DRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPDTLKWFAQAELIHSRWAMLAVTGIII 123
Query: 115 TDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEG 174
+ L G E WY+AG+ E+ FA + TLF+ Q++LMG+AE +R+ D I PGS E
Sbjct: 124 PECLERLGFIENFSWYDAGSREY-FADSTTLFVAQMVLMGWAEGRRWADLIKPGSVDIEP 182
Query: 175 SFFGLEAALEGLEPGYPGGPLLNPLGLAK-DIRNAREWKLKEIKNGLICLV 224
+ + GYPGG + + + + KEIKNG + ++
Sbjct: 183 KY--PHKVNPKPDVGYPGGLWFDFMMWGRGSPEPVMVLRTKEIKNGRLAML 231
>gi|226495517|ref|NP_001141336.1| uncharacterized protein LOC100273427 [Zea mays]
gi|194704056|gb|ACF86112.1| unknown [Zea mays]
Length = 271
Score = 140 bits (352), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 83/193 (43%), Positives = 113/193 (58%), Gaps = 13/193 (6%)
Query: 39 KSGTTRRYLATVVR--AQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQ 96
++ T+ ++TV RP W PG PPP+LDG+L GDFGFDPLGLG +PE LRW+ Q
Sbjct: 46 RANATKGGVSTVCEPLGPDRPIWFPGSSPPPWLDGSLPGDFGFDPLGLGSEPELLRWFAQ 105
Query: 97 AELVHARFAMAGVAGILFTDLLRVTGIRELPV-WYEAGAVEFKFASTRTLFIVQLLLMGF 155
AEL+H R+AM AGIL DLL G + W++AG+ E+ FA TLF+ Q+ LMG+
Sbjct: 106 AELMHGRWAMLAAAGILVPDLLARWGFIDAGFSWFDAGSREY-FADPWTLFVSQMALMGW 164
Query: 156 AETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE----W 211
AE +R+ DY+ PG E F + + GYPGG + A R + E
Sbjct: 165 AEGRRWADYLRPGCVDIEPRFPNRRNPVPDV--GYPGGLWFD---WANWGRGSPEPVMVL 219
Query: 212 KLKEIKNGLICLV 224
+ KEIKNG + ++
Sbjct: 220 RTKEIKNGRLAML 232
>gi|15221956|ref|NP_173349.1| light-harvesting complex I chlorophyll a/b binding protein 2
[Arabidopsis thaliana]
gi|21554357|gb|AAM63464.1| PSI type II chlorophyll a/b-binding protein, putative [Arabidopsis
thaliana]
gi|56381917|gb|AAV85677.1| At1g19150 [Arabidopsis thaliana]
gi|58331805|gb|AAW70400.1| At1g19150 [Arabidopsis thaliana]
gi|332191690|gb|AEE29811.1| light-harvesting complex I chlorophyll a/b binding protein 2
[Arabidopsis thaliana]
Length = 270
Score = 140 bits (352), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 74/171 (43%), Positives = 104/171 (60%), Gaps = 4/171 (2%)
Query: 55 QRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILF 114
RP W PG PP +LDG+L GDFGFDPLGLG DP++L+W+ QAEL+H+R+AM V GI+
Sbjct: 64 DRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPDTLKWFAQAELIHSRWAMLAVTGIII 123
Query: 115 TDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEG 174
+ L G E WY+AG+ E+ FA + TLF+ Q++LMG+AE +R+ D I PGS E
Sbjct: 124 PECLERLGFIENFSWYDAGSREY-FADSTTLFVAQMVLMGWAEGRRWADLIKPGSVDIEP 182
Query: 175 SFFGLEAALEGLEPGYPGGPLLNPLGLAK-DIRNAREWKLKEIKNGLICLV 224
+ + GYPGG + + + + KEIKNG + ++
Sbjct: 183 KY--PHKVNPKPDVGYPGGLWFDFMMWGRGSPEPVMVLRTKEIKNGRLAML 231
>gi|8954053|gb|AAF82226.1|AC069143_2 Contains similarity to a chlorophyll a/b-binding protein type II
from Arabidopsis thaliana gi|S46295 and contains a
chlorophyll A-B binding proteins PF|00504 domain
[Arabidopsis thaliana]
Length = 267
Score = 139 bits (351), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 74/171 (43%), Positives = 104/171 (60%), Gaps = 4/171 (2%)
Query: 55 QRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILF 114
RP W PG PP +LDG+L GDFGFDPLGLG DP++L+W+ QAEL+H+R+AM V GI+
Sbjct: 64 DRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPDTLKWFAQAELIHSRWAMLAVTGIII 123
Query: 115 TDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEG 174
+ L G E WY+AG+ E+ FA + TLF+ Q++LMG+AE +R+ D I PGS E
Sbjct: 124 PECLERLGFIENFSWYDAGSREY-FADSTTLFVAQMVLMGWAEGRRWADLIKPGSVDIEP 182
Query: 175 SFFGLEAALEGLEPGYPGGPLLNPLGLAK-DIRNAREWKLKEIKNGLICLV 224
+ + GYPGG + + + + KEIKNG + ++
Sbjct: 183 KY--PHKVNPKPDVGYPGGLWFDFMMWGRGSPEPVMVLRTKEIKNGRLAML 231
>gi|414589586|tpg|DAA40157.1| TPA: hypothetical protein ZEAMMB73_160322 [Zea mays]
Length = 232
Score = 139 bits (351), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 83/193 (43%), Positives = 114/193 (59%), Gaps = 13/193 (6%)
Query: 39 KSGTTRRYLATVVR--AQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQ 96
++ T+ ++TV RP W PG PPP+LDG+L GDFGFDPLGLG +PE LRW+ Q
Sbjct: 7 RANATKGGVSTVCEPLGPDRPIWFPGSSPPPWLDGSLPGDFGFDPLGLGSEPELLRWFAQ 66
Query: 97 AELVHARFAMAGVAGILFTDLLRVTGIRELPV-WYEAGAVEFKFASTRTLFIVQLLLMGF 155
AEL+H R+AM AGIL DLL G + W++AG+ E+ FA TLF+ Q+ LMG+
Sbjct: 67 AELMHGRWAMLAAAGILVPDLLARWGFIDAGFSWFDAGSREY-FADPWTLFVSQMALMGW 125
Query: 156 AETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE----W 211
AE +R+ DY+ PG E F + + + GYPGG + A R + E
Sbjct: 126 AEGRRWADYLRPGCVDIEPRFPNRKNPVPDV--GYPGGLWFD---WANWGRGSPEPVMVL 180
Query: 212 KLKEIKNGLICLV 224
+ KEIKNG + ++
Sbjct: 181 RTKEIKNGRLAML 193
>gi|356530445|ref|XP_003533791.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
[Glycine max]
Length = 260
Score = 139 bits (350), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 80/192 (41%), Positives = 108/192 (56%), Gaps = 13/192 (6%)
Query: 43 TRRYLATVVRA---------QQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRW 93
TRR +A + RP W PG PP +LDG+L GDFGFDPLGLG DPE L+W
Sbjct: 34 TRRTIANATKGVSAVCEPLPPDRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPELLKW 93
Query: 94 YVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLM 153
+ QAEL+H+R+AM V GIL +LL G E WY+AG E+ F TLF+VQ+ LM
Sbjct: 94 FAQAELMHSRWAMLAVFGILVPELLERIGYIENFSWYDAGTREY-FVDPTTLFVVQMGLM 152
Query: 154 GFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAK-DIRNAREWK 212
G+ E +R+ D ++PGS E + + GYPGG +P+ + +
Sbjct: 153 GWVEGRRWADIVNPGSVDIEPKVPHVTNPKPDV--GYPGGLWFDPMMWGRGSPEPVMVLR 210
Query: 213 LKEIKNGLICLV 224
KEIKNG + ++
Sbjct: 211 TKEIKNGRLAML 222
>gi|224069184|ref|XP_002326295.1| light-harvesting complex I protein Lhca6 [Populus trichocarpa]
gi|222833488|gb|EEE71965.1| light-harvesting complex I protein Lhca6 [Populus trichocarpa]
Length = 261
Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 75/171 (43%), Positives = 99/171 (57%), Gaps = 4/171 (2%)
Query: 55 QRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILF 114
RP W PG PP +LDG+L GDFGFDPLGLG DPESL+W+ QAEL+H R+AM AGIL
Sbjct: 55 DRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPESLKWFAQAELIHGRWAMLAAAGILI 114
Query: 115 TDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEG 174
+ L G + W++AG E+ FA TLF+VQL+LMG+ E +R+ D I PG +
Sbjct: 115 PEWLERLGFIDNFNWFDAGTREY-FADPTTLFVVQLILMGWIEGRRWADMIKPGCVDIDP 173
Query: 175 SFFGLEAALEGLEPGYPGGPLLNPLGLAK-DIRNAREWKLKEIKNGLICLV 224
+ GYPGG +P + + KEIKNG + ++
Sbjct: 174 KL--PHKTKPKPDVGYPGGLWFDPWNWGRGSPEPVMAIRTKEIKNGRLAML 222
>gi|118489607|gb|ABK96605.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 261
Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 75/171 (43%), Positives = 99/171 (57%), Gaps = 4/171 (2%)
Query: 55 QRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILF 114
RP W PG PP +LDG+L GDFGFDPLGLG DPESL+W+ QAEL+H R+AM AGIL
Sbjct: 55 DRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPESLKWFAQAELIHGRWAMLAAAGILI 114
Query: 115 TDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEG 174
+ L G + W++AG E+ FA TLF+VQL+LMG+ E +R+ D I PG +
Sbjct: 115 PEWLERLGFIDNFNWFDAGTREY-FADPTTLFVVQLILMGWIEGRRWADMIKPGCVDIDP 173
Query: 175 SFFGLEAALEGLEPGYPGGPLLNPLGLAK-DIRNAREWKLKEIKNGLICLV 224
+ GYPGG +P + + KEIKNG + ++
Sbjct: 174 KLPHKTKPKPDI--GYPGGLWFDPWNWGRGSPEPVMAIRTKEIKNGRLAML 222
>gi|255646839|gb|ACU23891.1| unknown [Glycine max]
Length = 260
Score = 139 bits (349), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 80/192 (41%), Positives = 108/192 (56%), Gaps = 13/192 (6%)
Query: 43 TRRYLATVVRA---------QQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRW 93
TRR +A + RP W PG PP +LDG+L GDFGFDPLGLG DPE L+W
Sbjct: 34 TRRTIANATKGVSAVCEPLPPDRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPELLKW 93
Query: 94 YVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLM 153
+ QAEL+H+R+AM V GIL +LL G E WY+AG E+ F TLF+VQ+ LM
Sbjct: 94 FAQAELMHSRWAMLAVFGILVPELLERIGYIENFSWYDAGTREY-FVDPTTLFVVQMGLM 152
Query: 154 GFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAK-DIRNAREWK 212
G+ E +R+ D ++PGS E + + GYPGG +P+ + +
Sbjct: 153 GWVEGRRWADIVNPGSVDIEPKVPHVTNPKPDV--GYPGGLWFDPMMWGRGSPEPVMVLR 210
Query: 213 LKEIKNGLICLV 224
KEIKNG + ++
Sbjct: 211 TKEIKNGGLAML 222
>gi|312281797|dbj|BAJ33764.1| unnamed protein product [Thellungiella halophila]
Length = 273
Score = 138 bits (347), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 87/213 (40%), Positives = 118/213 (55%), Gaps = 29/213 (13%)
Query: 37 PAKSGTTRRYLATVVRAQ---------QRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGED 87
PA S T+RR + VV+A RP W YLDG+L GD+GFDPLGL D
Sbjct: 26 PAVS-TSRRKSSFVVKATSTPPVKQGANRPLWFASSQSLTYLDGSLPGDYGFDPLGL-SD 83
Query: 88 PESL------RWYVQAELVHARFAMAGVAGILFTDLLRVTGI----RELPVWYEAGAVE- 136
PE RW E+++ RFAM G AG + ++L G+ LP W++ G +
Sbjct: 84 PEGTGGFIEPRWLAYGEIINGRFAMLGAAGAIAPEILGKAGLIPAETALP-WFQTGVIPP 142
Query: 137 ----FKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGL-EPGYP 191
+A TLF++++ LMGFAE +R D+ +PGS K+ F GLE G EP YP
Sbjct: 143 AGTYSYWADNYTLFVLEMALMGFAEHRRLQDWYNPGSMGKQ-YFLGLEKGFSGSGEPAYP 201
Query: 192 GGPLLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
GGP NPLG K+ ++ +E KLKEIKNG + ++
Sbjct: 202 GGPFFNPLGFGKNEKSMKELKLKEIKNGRLAML 234
>gi|226856772|gb|ACO87363.1| chloroplast chlorophyll a-b binding protein 4, partial [Liquidambar
formosana]
Length = 148
Score = 138 bits (347), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 74/154 (48%), Positives = 101/154 (65%), Gaps = 8/154 (5%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRE 125
P YL+G+L GD GFDPLGL EDPE+LRWYVQAELV+ R+AM GV G+L ++L GI
Sbjct: 2 PNYLNGSLPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVVGMLLPEVLTTIGIIN 61
Query: 126 LPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEG 185
+P WY+AG E+ FAS+ TLF+++ +L + E +R+ D +PG ++ F + +L
Sbjct: 62 VPKWYDAGKAEY-FASSSTLFVIEFILFHYVEIRRWQDIKNPGCVNQDPIF--KQYSLAP 118
Query: 186 LEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNG 219
E GYPGG + NPL A + E K KE+ NG
Sbjct: 119 HECGYPGG-IFNPLNFAPTL----EAKEKELANG 147
>gi|226856758|gb|ACO87356.1| chloroplast chlorophyll a-b binding protein 4, partial [Altingia
chinensis]
gi|226856760|gb|ACO87357.1| chloroplast chlorophyll a-b binding protein 4, partial [Altingia
chinensis]
gi|226856762|gb|ACO87358.1| chloroplast chlorophyll a-b binding protein 4, partial [Altingia
chinensis]
gi|226856764|gb|ACO87359.1| chloroplast chlorophyll a-b binding protein 4, partial [Altingia
chinensis]
gi|226856766|gb|ACO87360.1| chloroplast chlorophyll a-b binding protein 4, partial [Altingia
chinensis]
gi|226856768|gb|ACO87361.1| chloroplast chlorophyll a-b binding protein 4, partial [Liquidambar
formosana]
gi|226856770|gb|ACO87362.1| chloroplast chlorophyll a-b binding protein 4, partial [Liquidambar
formosana]
gi|226856774|gb|ACO87364.1| chloroplast chlorophyll a-b binding protein 4, partial [Liquidambar
formosana]
gi|226856776|gb|ACO87365.1| chloroplast chlorophyll a-b binding protein 4, partial [Liquidambar
formosana]
gi|226856778|gb|ACO87366.1| chloroplast chlorophyll a-b binding protein 4, partial
[Semiliquidambar cathayensis]
gi|226856780|gb|ACO87367.1| chloroplast chlorophyll a-b binding protein 4, partial
[Semiliquidambar cathayensis]
gi|226856784|gb|ACO87369.1| chloroplast chlorophyll a-b binding protein 4, partial
[Semiliquidambar cathayensis]
gi|226856786|gb|ACO87370.1| chloroplast chlorophyll a-b binding protein 4, partial
[Semiliquidambar cathayensis]
gi|226856788|gb|ACO87371.1| chloroplast chlorophyll a-b binding protein 4, partial
[Semiliquidambar cathayensis]
gi|226856790|gb|ACO87372.1| chloroplast chlorophyll a-b binding protein 4, partial
[Semiliquidambar cathayensis]
gi|226856792|gb|ACO87373.1| chloroplast chlorophyll a-b binding protein 4, partial
[Semiliquidambar cathayensis]
gi|226856794|gb|ACO87374.1| chloroplast chlorophyll a-b binding protein 4, partial
[Semiliquidambar cathayensis]
gi|226856798|gb|ACO87376.1| chloroplast chlorophyll a-b binding protein 4, partial [Liquidambar
formosana]
gi|226856800|gb|ACO87377.1| chloroplast chlorophyll a-b binding protein 4, partial [Liquidambar
formosana]
gi|226856802|gb|ACO87378.1| chloroplast chlorophyll a-b binding protein 4, partial [Liquidambar
formosana]
gi|226856804|gb|ACO87379.1| chloroplast chlorophyll a-b binding protein 4, partial [Liquidambar
formosana]
gi|226856806|gb|ACO87380.1| chloroplast chlorophyll a-b binding protein 4, partial [Altingia
chinensis]
gi|226856808|gb|ACO87381.1| chloroplast chlorophyll a-b binding protein 4, partial [Altingia
chinensis]
gi|226856810|gb|ACO87382.1| chloroplast chlorophyll a-b binding protein 4, partial [Altingia
chinensis]
gi|226856812|gb|ACO87383.1| chloroplast chlorophyll a-b binding protein 4, partial [Altingia
chinensis]
gi|226856814|gb|ACO87384.1| chloroplast chlorophyll a-b binding protein 4, partial [Altingia
chinensis]
gi|226856816|gb|ACO87385.1| chloroplast chlorophyll a-b binding protein 4, partial [Altingia
chinensis]
gi|226856818|gb|ACO87386.1| chloroplast chlorophyll a-b binding protein 4, partial [Altingia
chinensis]
gi|226856820|gb|ACO87387.1| chloroplast chlorophyll a-b binding protein 4, partial [Altingia
chinensis]
gi|226856822|gb|ACO87388.1| chloroplast chlorophyll a-b binding protein 4, partial [Altingia
chinensis]
gi|226856824|gb|ACO87389.1| chloroplast chlorophyll a-b binding protein 4, partial [Liquidambar
acalycina]
gi|226856826|gb|ACO87390.1| chloroplast chlorophyll a-b binding protein 4, partial [Liquidambar
acalycina]
gi|226856828|gb|ACO87391.1| chloroplast chlorophyll a-b binding protein 4, partial [Liquidambar
acalycina]
gi|226856830|gb|ACO87392.1| chloroplast chlorophyll a-b binding protein 4, partial [Liquidambar
acalycina]
gi|226856832|gb|ACO87393.1| chloroplast chlorophyll a-b binding protein 4, partial [Liquidambar
acalycina]
Length = 148
Score = 137 bits (345), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 74/154 (48%), Positives = 101/154 (65%), Gaps = 8/154 (5%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRE 125
P YL+G+L GD GFDPLGL EDPE+LRWYVQAELV+ R+AM GV G+L ++L GI
Sbjct: 2 PNYLNGSLPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVVGMLLPEVLTSIGIIN 61
Query: 126 LPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEG 185
+P WY+AG E+ FAS+ TLF+++ +L + E +R+ D +PG ++ F + +L
Sbjct: 62 VPKWYDAGKAEY-FASSSTLFVIEFILFHYVEIRRWQDIKNPGCVNQDPIF--KQYSLAP 118
Query: 186 LEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNG 219
E GYPGG + NPL A + E K KE+ NG
Sbjct: 119 HECGYPGG-IFNPLNFAPTL----EAKEKELANG 147
>gi|226856782|gb|ACO87368.1| chloroplast chlorophyll a-b binding protein 4, partial
[Semiliquidambar cathayensis]
Length = 148
Score = 137 bits (345), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 75/154 (48%), Positives = 101/154 (65%), Gaps = 8/154 (5%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRE 125
P YL+G+L GD GFDPLGL EDPE+LRWYVQAELV+ R+AM GV G+L ++L GI
Sbjct: 2 PNYLNGSLPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVVGMLLPEVLTSIGIIN 61
Query: 126 LPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEG 185
+P WY+AG E+ FAS+ TLF+++ +L + E +R+ D +PG +G F + +L
Sbjct: 62 VPKWYDAGKAEY-FASSSTLFVIEFILFHYVEIRRWQDIKNPGC-VNQGPIFK-QYSLAP 118
Query: 186 LEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNG 219
E GYPGG + NPL A + E K KE+ NG
Sbjct: 119 HECGYPGG-IFNPLNFAPTL----EAKEKELANG 147
>gi|430947|gb|AAA18206.1| PSI type III chlorophyll a/b-binding protein [Arabidopsis thaliana]
Length = 273
Score = 137 bits (344), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 79/191 (41%), Positives = 109/191 (57%), Gaps = 19/191 (9%)
Query: 50 VVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESL------RWYVQAELVHAR 103
V + RP W+ YLDG+L GD+GFDPLGL DPE RW E+++ R
Sbjct: 47 VKQGANRPLWVASSQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPRWLAYGEIINGR 105
Query: 104 FAMAGVAGILFTDLLRVTGI----RELPVWYEAGAVE-----FKFASTRTLFIVQLLLMG 154
FAM G AG + ++L G+ LP W++ G + +A TLF++++ LMG
Sbjct: 106 FAMLGAAGAIAPEILGKAGLIPAETALP-WFQTGVIPPAGTYTYWADNYTLFVLEMALMG 164
Query: 155 FAETKRYMDYISPGSQTKEGSFFGLEAALEGL-EPGYPGGPLLNPLGLAKDIRNAREWKL 213
FAE +R D+ +PGS K+ F GLE L G P YPGGP NPLG KD ++ +E KL
Sbjct: 165 FAEHRRLQDWYNPGSMGKQ-YFLGLEKGLAGSGNPAYPGGPFFNPLGFGKDEKSLKELKL 223
Query: 214 KEIKNGLICLV 224
KE+KNG + ++
Sbjct: 224 KEVKNGRLAML 234
>gi|110736814|dbj|BAF00366.1| PSI type III chlorophyll a/b-binding protein [Arabidopsis thaliana]
Length = 273
Score = 137 bits (344), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 79/191 (41%), Positives = 108/191 (56%), Gaps = 19/191 (9%)
Query: 50 VVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESL------RWYVQAELVHAR 103
V + RP W YLDG+L GD+GFDPLGL DPE RW E+++ R
Sbjct: 47 VKQGANRPLWFASSQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPRWLAYGEIINGR 105
Query: 104 FAMAGVAGILFTDLLRVTGI----RELPVWYEAGAVE-----FKFASTRTLFIVQLLLMG 154
FAM G AG + ++L G+ LP W++ G + +A TLF++++ LMG
Sbjct: 106 FAMLGAAGAIAPEILGKAGLIPAETALP-WFQTGVIPPAGTYTYWADNYTLFVLEMALMG 164
Query: 155 FAETKRYMDYISPGSQTKEGSFFGLEAALEGL-EPGYPGGPLLNPLGLAKDIRNAREWKL 213
FAE +R D+ +PGS K+ F GLE L G P YPGGP NPLG KD ++ +E KL
Sbjct: 165 FAEHRRLQDWYNPGSMGKQ-YFLGLEKGLAGSGNPAYPGGPFFNPLGFGKDEKSLKELKL 223
Query: 214 KEIKNGLICLV 224
KE+KNG + ++
Sbjct: 224 KEVKNGRLAML 234
>gi|15219941|ref|NP_176347.1| light-harvesting complex I chlorophyll a/b binding protein 3
[Arabidopsis thaliana]
gi|334183551|ref|NP_001185280.1| light-harvesting complex I chlorophyll a/b binding protein 3
[Arabidopsis thaliana]
gi|4585882|gb|AAD25555.1|AC005850_12 PSI type III chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|16649019|gb|AAL24361.1| PSI type III chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|20260044|gb|AAM13369.1| PSI type III chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|332195725|gb|AEE33846.1| light-harvesting complex I chlorophyll a/b binding protein 3
[Arabidopsis thaliana]
gi|332195727|gb|AEE33848.1| light-harvesting complex I chlorophyll a/b binding protein 3
[Arabidopsis thaliana]
Length = 273
Score = 137 bits (344), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 79/191 (41%), Positives = 108/191 (56%), Gaps = 19/191 (9%)
Query: 50 VVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESL------RWYVQAELVHAR 103
V + RP W YLDG+L GD+GFDPLGL DPE RW E+++ R
Sbjct: 47 VKQGANRPLWFASSQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPRWLAYGEIINGR 105
Query: 104 FAMAGVAGILFTDLLRVTGI----RELPVWYEAGAVE-----FKFASTRTLFIVQLLLMG 154
FAM G AG + ++L G+ LP W++ G + +A TLF++++ LMG
Sbjct: 106 FAMLGAAGAIAPEILGKAGLIPAETALP-WFQTGVIPPAGTYTYWADNYTLFVLEMALMG 164
Query: 155 FAETKRYMDYISPGSQTKEGSFFGLEAALEGL-EPGYPGGPLLNPLGLAKDIRNAREWKL 213
FAE +R D+ +PGS K+ F GLE L G P YPGGP NPLG KD ++ +E KL
Sbjct: 165 FAEHRRLQDWYNPGSMGKQ-YFLGLEKGLAGSGNPAYPGGPFFNPLGFGKDEKSLKELKL 223
Query: 214 KEIKNGLICLV 224
KE+KNG + ++
Sbjct: 224 KEVKNGRLAML 234
>gi|297840405|ref|XP_002888084.1| hypothetical protein ARALYDRAFT_475174 [Arabidopsis lyrata subsp.
lyrata]
gi|297333925|gb|EFH64343.1| hypothetical protein ARALYDRAFT_475174 [Arabidopsis lyrata subsp.
lyrata]
Length = 273
Score = 136 bits (343), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 79/191 (41%), Positives = 108/191 (56%), Gaps = 19/191 (9%)
Query: 50 VVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESL------RWYVQAELVHAR 103
V + RP W YLDG+L GD+GFDPLGL DPE RW E+++ R
Sbjct: 47 VKQGANRPLWFASSQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPRWLAYGEIINGR 105
Query: 104 FAMAGVAGILFTDLLRVTGI----RELPVWYEAGAVE-----FKFASTRTLFIVQLLLMG 154
FAM G AG + ++L G+ LP W++ G + +A TLF++++ LMG
Sbjct: 106 FAMLGAAGAIAPEILGKAGLIPPETALP-WFQTGVIPPAGTYTYWADNYTLFVLEMALMG 164
Query: 155 FAETKRYMDYISPGSQTKEGSFFGLEAALEGL-EPGYPGGPLLNPLGLAKDIRNAREWKL 213
FAE +R D+ +PGS K+ F GLE L G P YPGGP NPLG KD ++ +E KL
Sbjct: 165 FAEHRRLQDWYNPGSMGKQ-YFLGLEKGLAGSGNPAYPGGPFFNPLGFGKDEKSLKELKL 223
Query: 214 KEIKNGLICLV 224
KE+KNG + ++
Sbjct: 224 KEVKNGRLAML 234
>gi|449442612|ref|XP_004139075.1| PREDICTED: chlorophyll a-b binding protein 8, chloroplastic-like
[Cucumis sativus]
gi|449532766|ref|XP_004173351.1| PREDICTED: chlorophyll a-b binding protein 8, chloroplastic-like
[Cucumis sativus]
Length = 273
Score = 136 bits (342), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 85/209 (40%), Positives = 116/209 (55%), Gaps = 28/209 (13%)
Query: 41 GTTRRYLATVVRAQQRPT---------WLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESL 91
G++R+ + VVRA+ P W YLDG+L GDFGFDPLGL DPE
Sbjct: 29 GSSRKSASFVVRAEATPPVKQGADRQLWFASKQSLSYLDGSLPGDFGFDPLGL-SDPEGT 87
Query: 92 ------RWYVQAELVHARFAMAGVAGILFTDLLRVTGI----RELPVWYEAGAVE----- 136
RW E+++ RFAM G AG + ++ G+ LP W++ G +
Sbjct: 88 GGFIEPRWLAYGEVINGRFAMLGAAGAIAPEIFGSLGLIPPETALP-WFKTGVIPPAGTY 146
Query: 137 FKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGL-EPGYPGGPL 195
+A TLF+ ++ LMGFAE +R+ D+ PGS K+ F GLE L G +P YPGGPL
Sbjct: 147 NYWADPYTLFVFEMALMGFAEHRRFQDWAKPGSMGKQ-YFLGLEKFLGGSGDPAYPGGPL 205
Query: 196 LNPLGLAKDIRNAREWKLKEIKNGLICLV 224
NPLG KD ++ +E KLKEIKNG + ++
Sbjct: 206 FNPLGFGKDEKSMKELKLKEIKNGRLAML 234
>gi|226872|prf||1609235A chlorophyll a/b binding protein
Length = 273
Score = 136 bits (342), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 78/190 (41%), Positives = 107/190 (56%), Gaps = 17/190 (8%)
Query: 50 VVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESL------RWYVQAELVHAR 103
V + R W YLDG+L GDFGFDPLGL DPE +W E+++ R
Sbjct: 47 VKQGANRQLWFASKQSLSYLDGSLPGDFGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGR 105
Query: 104 FAMAGVAGILFTDLLRVTGI---RELPVWYEAGAVE-----FKFASTRTLFIVQLLLMGF 155
FAM G AG + ++L G+ W++ G + +A TLF++++ LMGF
Sbjct: 106 FAMLGAAGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADNYTLFVLEMALMGF 165
Query: 156 AETKRYMDYISPGSQTKEGSFFGLEAALEGL-EPGYPGGPLLNPLGLAKDIRNAREWKLK 214
AE +R+ D+ PGS K+ F GLE L G +P YPGGPL NPLG KD ++ +E KLK
Sbjct: 166 AEHRRFQDWAKPGSMGKQ-YFLGLEKGLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLK 224
Query: 215 EIKNGLICLV 224
EIKNG + ++
Sbjct: 225 EIKNGRLAML 234
>gi|226856796|gb|ACO87375.1| chloroplast chlorophyll a-b binding protein 4, partial
[Semiliquidambar cathayensis]
Length = 148
Score = 135 bits (340), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 73/154 (47%), Positives = 100/154 (64%), Gaps = 8/154 (5%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRE 125
P YL+G+L GD GFDPLGL EDPE+LRWYVQAELV+ R+AM GV G+L ++L GI
Sbjct: 2 PNYLNGSLPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVVGMLLPEVLTSIGIIN 61
Query: 126 LPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEG 185
+P WY+AG E+ FAS+ TLF+++ +L + E +R+ D +PG ++ + +L
Sbjct: 62 VPKWYDAGKAEY-FASSSTLFVIEFILFHYVEIRRWQDIKNPGCVNQDPIL--KQYSLAP 118
Query: 186 LEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNG 219
E GYPGG + NPL A + E K KE+ NG
Sbjct: 119 HECGYPGG-IFNPLNFAPTL----EAKEKELANG 147
>gi|75220641|sp|Q32904.1|CB23_PEA RecName: Full=Chlorophyll a-b binding protein 3, chloroplastic;
AltName: Full=LHCII type III CAB-3; Flags: Precursor
gi|309673|gb|AAA84545.1| light harvesting protein [Pisum sativum]
Length = 275
Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 89/239 (37%), Positives = 122/239 (51%), Gaps = 33/239 (13%)
Query: 11 LQPSSSSSFICNDVNKSSIGITSAFLPAKSGTTRRYLATVVRAQ----------QRPTWL 60
L SSS +F V +S + LP+ G +R+ L VRA RP W
Sbjct: 6 LVSSSSLTFAAEAVRQS---FRARSLPSSVGCSRKGL---VRAAATPPVKQGGVDRPLWF 59
Query: 61 PGVDPPPYLDGTLAGDFGFDPLGLGEDPESL------RWYVQAELVHARFAMAGVAGILF 114
YLDG+L GD+GFDPLGL DPE RW E+++ RFAM G G +
Sbjct: 60 ASKQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPRWLAYGEVINGRFAMLGAVGAIA 118
Query: 115 TDLLRVTGI---RELPVWYEAGAVE-----FKFASTRTLFIVQLLLMGFAETKRYMDYIS 166
+ L G+ W++ G + +A TLF++++ LMGFAE +R+ D+
Sbjct: 119 PEYLGKVGLIPQETALAWFQTGVIPPAGTYNYWADNYTLFVLEMALMGFAEHRRFQDWAK 178
Query: 167 PGSQTKEGSFFGLEAALEGL-EPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
PGS K+ F GLE G P YPGGP NPLG KD ++ +E KLKE+KNG + ++
Sbjct: 179 PGSMGKQ-YFLGLEKGFGGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAML 236
>gi|115813|sp|P27522.1|CB13_SOLLC RecName: Full=Chlorophyll a-b binding protein 8, chloroplastic;
AltName: Full=LHCI type III CAB-8; Flags: Precursor
gi|19182|emb|CAA33330.1| Type III chlorophyll a/b-binding protein [Solanum lycopersicum]
Length = 273
Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 78/190 (41%), Positives = 106/190 (55%), Gaps = 17/190 (8%)
Query: 50 VVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESL------RWYVQAELVHAR 103
V + R W YLDG L GDFGFDPLGL DPE +W E+++ R
Sbjct: 47 VKQGANRQLWFASKQSLSYLDGRLPGDFGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGR 105
Query: 104 FAMAGVAGILFTDLLRVTGI---RELPVWYEAGAVE-----FKFASTRTLFIVQLLLMGF 155
FAM G AG + ++L G+ W++ G + +A TLF++++ LMGF
Sbjct: 106 FAMLGAAGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADNYTLFVLEMALMGF 165
Query: 156 AETKRYMDYISPGSQTKEGSFFGLEAALEGL-EPGYPGGPLLNPLGLAKDIRNAREWKLK 214
AE +R+ D+ PGS K+ F GLE L G +P YPGGPL NPLG KD ++ +E KLK
Sbjct: 166 AEHRRFQDWAKPGSMGKQ-YFLGLEKGLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLK 224
Query: 215 EIKNGLICLV 224
EIKNG + ++
Sbjct: 225 EIKNGRLAML 234
>gi|116519125|gb|ABJ99591.1| type III chlorophyll a/b-binding protein [Lycoris aurea]
Length = 275
Score = 134 bits (338), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 83/213 (38%), Positives = 118/213 (55%), Gaps = 28/213 (13%)
Query: 37 PAKSGTTRRYLATVVRAQQRPT---------WLPGVDPPPYLDGTLAGDFGFDPLGLGED 87
P +S ++ R + VV+A P W YLDG+L GDFGFDPLGL D
Sbjct: 27 PTRSFSSSRKASFVVKAASTPPVKQGADRQLWFASKQSLSYLDGSLPGDFGFDPLGL-SD 85
Query: 88 PESL------RWYVQAELVHARFAMAGVAGILFTDLLRVTGI----RELPVWYEAGAVE- 136
PE +W E+++ R+AM GVAG + ++L G+ LP W++ G +
Sbjct: 86 PEGTGGFIEPKWLAYGEIINGRYAMLGVAGAIAPEILGKLGLIPPETALP-WFQTGVIPP 144
Query: 137 ----FKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGL-EPGYP 191
+A TLF++++ LMGFAE +R+ D+ PGS K+ F G E L G +P YP
Sbjct: 145 AGTYSYWADPYTLFVLEMALMGFAEHRRFQDWAKPGSMGKQ-YFLGFEKFLGGSGDPAYP 203
Query: 192 GGPLLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
GGP+ NPLG KD R+ +E KLKE+KNG + ++
Sbjct: 204 GGPIFNPLGFGKDERSMKELKLKEVKNGRLAML 236
>gi|116519121|gb|ABJ99590.1| type III chlorophyll a/b-binding protein [Lycoris aurea]
Length = 275
Score = 134 bits (337), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 82/213 (38%), Positives = 119/213 (55%), Gaps = 28/213 (13%)
Query: 37 PAKSGTTRRYLATVVRAQQRPT---------WLPGVDPPPYLDGTLAGDFGFDPLGLGED 87
P++S ++ R + VV+A P W YLDG+L GDFGFDPLGL D
Sbjct: 27 PSRSFSSSRKASFVVKAASTPPVKQGADRQLWFASKQSLSYLDGSLPGDFGFDPLGL-SD 85
Query: 88 PESL------RWYVQAELVHARFAMAGVAGILFTDLLRVTGI----RELPVWYEAGAVE- 136
PE +W E+++ R+AM GVAG + ++L G+ LP W++ G +
Sbjct: 86 PEGTGGFIEPKWLAYGEIINGRYAMLGVAGAIAPEILGKLGLIPPETALP-WFQTGVIPP 144
Query: 137 ----FKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGL-EPGYP 191
+A TLF++++ LMGFAE +R+ D+ PGS K+ F G E L G +P YP
Sbjct: 145 AGTYSYWADPYTLFVLEMALMGFAEHRRFQDWAKPGSMGKQ-YFLGFEKFLGGSGDPAYP 203
Query: 192 GGPLLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
GGP+ NPLG KD ++ +E KLKE+KNG + ++
Sbjct: 204 GGPIFNPLGFGKDEKSMKELKLKEVKNGRLAML 236
>gi|255646873|gb|ACU23907.1| unknown [Glycine max]
Length = 276
Score = 133 bits (334), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 87/235 (37%), Positives = 125/235 (53%), Gaps = 29/235 (12%)
Query: 14 SSSSSFICNDVNKSSIGITSAFLPAKSGTTRRY--------LATVVRAQQRPTWLPGVDP 65
SSSS + + S+G S L + G +R+ + V + RP W
Sbjct: 8 SSSSLTFSAEATRQSLGPRS--LQSPFGFSRKASFLVKAAAIPPVKQGSDRPLWFASKQS 65
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESL------RWYVQAELVHARFAMAGVAGILFTDLLR 119
YLDG+L GD+GFDPLGL DPE +W E+++ R+AM G G + ++L
Sbjct: 66 LSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEIINGRYAMLGAVGAIAPEILG 124
Query: 120 VTGI----RELPVWYEAG----AVEFKF-ASTRTLFIVQLLLMGFAETKRYMDYISPGSQ 170
G+ LP W+ G A + + A + TLF+ ++ LMGFAE +R+ D+ PGS
Sbjct: 125 KAGLIPQETALP-WFRTGVFPPAGTYNYWADSYTLFVFEMALMGFAEHRRFQDWAKPGSM 183
Query: 171 TKEGSFFGLEAALEGL-EPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
K+ F GLE L G EP YPGGP NPLG KD ++ ++ KLKE+KNG + ++
Sbjct: 184 GKQ-YFLGLEKGLGGSGEPAYPGGPFFNPLGFGKDEKSLKDLKLKEVKNGRLAML 237
>gi|356554088|ref|XP_003545381.1| PREDICTED: chlorophyll a-b binding protein 3, chloroplastic-like
isoform 1 [Glycine max]
gi|356554090|ref|XP_003545382.1| PREDICTED: chlorophyll a-b binding protein 3, chloroplastic-like
isoform 2 [Glycine max]
Length = 276
Score = 133 bits (334), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 86/233 (36%), Positives = 121/233 (51%), Gaps = 25/233 (10%)
Query: 14 SSSSSFICNDVNKSSIGITSAFLPAKSGTTRRYLAT------VVRAQQRPTWLPGVDPPP 67
SSSS + + S+G S P +L V + RP W
Sbjct: 8 SSSSLTFSAEATRQSLGPRSLQSPFGFSRKASFLVKAAATPPVKQGSDRPLWFASKQSLS 67
Query: 68 YLDGTLAGDFGFDPLGLGEDPESL------RWYVQAELVHARFAMAGVAGILFTDLLRVT 121
YLDG+L GD+GFDPLGL DPE +W E+++ R+AM G G + ++L
Sbjct: 68 YLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEIINGRYAMLGAVGAIAPEILGKA 126
Query: 122 GI----RELPVWYEAG----AVEFKF-ASTRTLFIVQLLLMGFAETKRYMDYISPGSQTK 172
G+ LP W+ G A + + A + TLF+ ++ LMGFAE +R+ D+ PGS K
Sbjct: 127 GLIPQETALP-WFRTGVFPPAGTYNYWADSYTLFVFEMALMGFAEHRRFQDWAKPGSMGK 185
Query: 173 EGSFFGLEAALEGL-EPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
+ F GLE L G EP YPGGP NPLG KD ++ ++ KLKE+KNG + ++
Sbjct: 186 Q-YFLGLEKGLGGSGEPAYPGGPFFNPLGFGKDEKSLKDLKLKEVKNGRLAML 237
>gi|21554335|gb|AAM63442.1| PSI type III chlorophyll a/b-binding protein, putative [Arabidopsis
thaliana]
Length = 273
Score = 133 bits (334), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 80/191 (41%), Positives = 107/191 (56%), Gaps = 19/191 (9%)
Query: 50 VVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESL------RWYVQAELVHAR 103
V + RP W YLDG+L GD+GFDPLGL DPE RW E+++ R
Sbjct: 47 VKQGANRPLWFASSQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPRWLAYGEIINGR 105
Query: 104 FAMAGVAGILFTDLLRVTGI----RELP-----VWYEAGAVEFKFASTRTLFIVQLLLMG 154
FAM G AG + ++L G+ LP V AG + +A TLF++++ LMG
Sbjct: 106 FAMLGAAGAIAPEILGKAGLIPAETALPXXQTGVIPPAGTYTY-WADNYTLFVLEMALMG 164
Query: 155 FAETKRYMDYISPGSQTKEGSFFGLEAALEGL-EPGYPGGPLLNPLGLAKDIRNAREWKL 213
FAE +R D+ +PGS K+ F GLE L G P YPGGP NPLG KD ++ +E KL
Sbjct: 165 FAEHRRLQDWYNPGSMGKQ-YFLGLEKGLAGSGNPAYPGGPFFNPLGFGKDEKSLKELKL 223
Query: 214 KEIKNGLICLV 224
KE+KNG + ++
Sbjct: 224 KEVKNGRLAML 234
>gi|255640167|gb|ACU20374.1| unknown [Glycine max]
Length = 276
Score = 132 bits (332), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 86/233 (36%), Positives = 121/233 (51%), Gaps = 25/233 (10%)
Query: 14 SSSSSFICNDVNKSSIGITSAFLPAKSGTTRRYLAT------VVRAQQRPTWLPGVDPPP 67
SSSS + + S+G S P +L V + RP W
Sbjct: 8 SSSSLTFSAEAARQSLGPRSLQSPFGFSRKASFLVKAAATPPVKQGSDRPLWFASKQSLS 67
Query: 68 YLDGTLAGDFGFDPLGLGEDPESL------RWYVQAELVHARFAMAGVAGILFTDLLRVT 121
YLDG+L GD+GFDPLGL DPE +W E+++ R+AM G G + ++L
Sbjct: 68 YLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEIINGRYAMLGAVGAIAPEILGKA 126
Query: 122 GI----RELPVWYEAG----AVEFKF-ASTRTLFIVQLLLMGFAETKRYMDYISPGSQTK 172
G+ LP W+ G A + + A + TLF+ ++ LMGFAE +R+ D+ PGS K
Sbjct: 127 GLIPQETALP-WFRTGVFPPAGTYNYWADSYTLFVFEMALMGFAEHRRFQDWAKPGSMGK 185
Query: 173 EGSFFGLEAALEGL-EPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
+ F GLE L G EP YPGGP NPLG KD ++ ++ KLKE+KNG + ++
Sbjct: 186 Q-YFLGLEKGLGGSGEPAYPGGPFFNPLGFGKDEKSLKDLKLKEVKNGRLAML 237
>gi|356501755|ref|XP_003519689.1| PREDICTED: chlorophyll a-b binding protein 3, chloroplastic-like
[Glycine max]
Length = 276
Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 86/233 (36%), Positives = 121/233 (51%), Gaps = 25/233 (10%)
Query: 14 SSSSSFICNDVNKSSIGITSAFLPAKSGTTRRYLAT------VVRAQQRPTWLPGVDPPP 67
SSSS + + S+G S P +L V + RP W
Sbjct: 8 SSSSLTFSAEAARQSLGPRSLQSPFGFSRKASFLVKAAATPPVKQGSDRPLWFASKQSLS 67
Query: 68 YLDGTLAGDFGFDPLGLGEDPESL------RWYVQAELVHARFAMAGVAGILFTDLLRVT 121
YLDG+L GD+GFDPLGL DPE +W E+++ R+AM G G + ++L
Sbjct: 68 YLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEIINGRYAMLGAVGAIAPEILGKA 126
Query: 122 GI----RELPVWYEAG----AVEFKF-ASTRTLFIVQLLLMGFAETKRYMDYISPGSQTK 172
G+ LP W+ G A + + A + TLF+ ++ LMGFAE +R+ D+ PGS K
Sbjct: 127 GLIPQETALP-WFRTGVFPPAGTYNYWADSYTLFVFEMALMGFAEHRRFQDWAKPGSMGK 185
Query: 173 EGSFFGLEAALEGL-EPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
+ F GLE L G EP YPGGP NPLG KD ++ ++ KLKE+KNG + ++
Sbjct: 186 Q-YFLGLEKGLGGSGEPAYPGGPFFNPLGFGKDEKSLKDLKLKEVKNGRLAML 237
>gi|268612160|pdb|2WSC|3 Chain 3, Improved Model Of Plant Photosystem I
gi|268612178|pdb|2WSE|3 Chain 3, Improved Model Of Plant Photosystem I
gi|268612196|pdb|2WSF|3 Chain 3, Improved Model Of Plant Photosystem I
Length = 276
Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 86/233 (36%), Positives = 121/233 (51%), Gaps = 25/233 (10%)
Query: 14 SSSSSFICNDVNKSSIGITSAFLPAKSGTTRRYLAT------VVRAQQRPTWLPGVDPPP 67
SSSS + + S+G S P +L V + RP W
Sbjct: 8 SSSSLTFSAEAARQSLGPRSLQSPFGFSRKASFLVKAAATPPVKQGSDRPLWFASKQSLS 67
Query: 68 YLDGTLAGDFGFDPLGLGEDPESL------RWYVQAELVHARFAMAGVAGILFTDLLRVT 121
YLDG+L GD+GFDPLGL DPE +W E+++ R+AM G G + ++L
Sbjct: 68 YLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEIINGRYAMLGAVGAIAPEILGKA 126
Query: 122 GI----RELPVWYEAG----AVEFKF-ASTRTLFIVQLLLMGFAETKRYMDYISPGSQTK 172
G+ LP W+ G A + + A + TLF+ ++ LMGFAE +R+ D+ PGS K
Sbjct: 127 GLIPQETALP-WFRTGFIPPAGTYNYWADSYTLFVFEMALMGFAEHRRFQDWAKPGSMGK 185
Query: 173 EGSFFGLEAALEGL-EPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
+ F GLE L G EP YPGGP NPLG KD ++ ++ KLKE+KNG + ++
Sbjct: 186 Q-YFLGLEKGLGGSGEPAYPGGPFFNPLGFGKDEKSLKDLKLKEVKNGRLAML 237
>gi|255567170|ref|XP_002524566.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223536119|gb|EEF37774.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 273
Score = 132 bits (331), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 79/191 (41%), Positives = 108/191 (56%), Gaps = 19/191 (9%)
Query: 50 VVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESL------RWYVQAELVHAR 103
V + R W YLDG+L GDFGFDPLGL DPE +W E+++ R
Sbjct: 47 VKQGADRQLWFASKQSLTYLDGSLPGDFGFDPLGL-SDPEGTGGFIEPKWLAYGEIINGR 105
Query: 104 FAMAGVAGILFTDLLRVTGI----RELPVWYEAGAVEFK-----FASTRTLFIVQLLLMG 154
FAM G AG + ++L G+ LP W++ G + +A TLF+ ++ LMG
Sbjct: 106 FAMLGAAGAIAPEILGKAGLIPPETALP-WFQTGVIPPAGTYDYWADPYTLFVFEMALMG 164
Query: 155 FAETKRYMDYISPGSQTKEGSFFGLEAALEGL-EPGYPGGPLLNPLGLAKDIRNAREWKL 213
FAE +R+ D+ PGS K+ F GLE L G +P YPGGPL NPLG KD ++ +E KL
Sbjct: 165 FAEHRRFQDWAKPGSMGKQ-YFLGLEKFLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKL 223
Query: 214 KEIKNGLICLV 224
KE+KNG + ++
Sbjct: 224 KEVKNGRLAML 234
>gi|225436257|ref|XP_002273201.1| PREDICTED: chlorophyll a-b binding protein 8, chloroplastic [Vitis
vinifera]
Length = 274
Score = 130 bits (326), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 78/191 (40%), Positives = 110/191 (57%), Gaps = 19/191 (9%)
Query: 50 VVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESL------RWYVQAELVHAR 103
V + RP W YLDG+L GD+GFDPLGL DPE RW E+++ R
Sbjct: 47 VKQGADRPLWFASKQSLTYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPRWLAYGEVINGR 105
Query: 104 FAMAGVAGILFTDLLRVTGI----RELPVWYEAG----AVEFKF-ASTRTLFIVQLLLMG 154
+AM G G + ++L G+ LP W++ G A + + A TLF+ ++ LMG
Sbjct: 106 YAMLGAVGAIAPEILGKLGLIPPETALP-WFKTGVFPPAGTYNYWADPYTLFVFEMALMG 164
Query: 155 FAETKRYMDYISPGSQTKEGSFFGLEAALEGL-EPGYPGGPLLNPLGLAKDIRNAREWKL 213
FAE +R+ D+ +PGS K+ F GLE L G +P YPGGPL NPLG KD ++ ++ KL
Sbjct: 165 FAEHRRFQDWANPGSMGKQ-YFLGLEKYLGGSGDPAYPGGPLFNPLGFGKDEKSLKDLKL 223
Query: 214 KEIKNGLICLV 224
KE+KNG + ++
Sbjct: 224 KEVKNGRLAML 234
>gi|20794|emb|CAA41407.1| Type III chlorophyll a /b-binding protein [Pinus sylvestris]
Length = 286
Score = 129 bits (324), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 89/240 (37%), Positives = 124/240 (51%), Gaps = 32/240 (13%)
Query: 14 SSSSSFICNDVNKSS---IGITSAFLPAKSGTTRRYLATVVRAQ----------QRPTWL 60
S S S I D+ + +G + LP + R + VR+Q R W
Sbjct: 11 SPSLSAIGGDIGRRQQLLLGGKALVLPPYFSQSSRRTSFTVRSQASSNKPVKQGDRQLWF 70
Query: 61 PGVDPPPYLDGTLAGDFGFDPLGLGEDPE------SLRWYVQAELVHARFAMAGVAGILF 114
YLDG+L GD+GFDPLGL DPE W V E+++ R+AM G G +
Sbjct: 71 ASDQSLSYLDGSLPGDYGFDPLGL-MDPEGPGGFMEPGWLVYGEIINGRYAMLGAVGAIA 129
Query: 115 TDLLRVTGI----RELPVWYEAGAVE-----FKFASTRTLFIVQLLLMGFAETKRYMDYI 165
++L G+ LP W++ G + +A TLF++++ LMGFAE +R DY
Sbjct: 130 PEILGKLGLIPQETALP-WFQTGVIPPAGTYNYWADPFTLFVLEMALMGFAEHRRLQDYR 188
Query: 166 SPGSQTKEGSFFGLEAALEGL-EPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
+PGS K+ F GLE L G P YPGGPL NPLG KD ++ +E KLKE+KNG + ++
Sbjct: 189 NPGSMGKQ-YFLGLEKFLGGSGNPAYPGGPLFNPLGFGKDEKSMKELKLKEVKNGRLAML 247
>gi|302829360|ref|XP_002946247.1| hypothetical protein VOLCADRAFT_108856 [Volvox carteri f.
nagariensis]
gi|300269062|gb|EFJ53242.1| hypothetical protein VOLCADRAFT_108856 [Volvox carteri f.
nagariensis]
Length = 256
Score = 128 bits (322), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 77/185 (41%), Positives = 106/185 (57%), Gaps = 14/185 (7%)
Query: 40 SGTTRRYLATVVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAEL 99
SG RR + V +A RP WLPG PP +L G L GDFGFDPLGLG +P+SL+W+ ++EL
Sbjct: 14 SGVARR--SVVAKASSRPLWLPGSTPPAHLKGELPGDFGFDPLGLGANPDSLKWFRESEL 71
Query: 100 VHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETK 159
VH+R+AMA VAGIL +++R WY AG+ L + M + E +
Sbjct: 72 VHSRWAMAAVAGILVQEIVRPDVF-----WYSAGSQVESPLGPLGLLAFEFFCMHWVELR 126
Query: 160 RYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNG 219
R+ D PGS ++ F + L EPGYPGG + P + D+ E K+KEIKNG
Sbjct: 127 RWQDLRKPGSVDQDPIFS--QYKLPPHEPGYPGG-VFAPF-IPGDL---AELKVKEIKNG 179
Query: 220 LICLV 224
+ ++
Sbjct: 180 RLAML 184
>gi|118489937|gb|ABK96765.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 274
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 76/190 (40%), Positives = 105/190 (55%), Gaps = 19/190 (10%)
Query: 51 VRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESL------RWYVQAELVHARF 104
V+ R W YLDG+L GDFGFDPLGL DPE +W E+++ R+
Sbjct: 49 VKQGNRQLWFASKQSLSYLDGSLPGDFGFDPLGL-SDPEGTGGFIEPKWLAYGEIINGRY 107
Query: 105 AMAGVAGILFTDLLRVTGI----RELPVWYEAGAVE-----FKFASTRTLFIVQLLLMGF 155
AM G G + ++L G+ LP W+ G + +A TLF+ ++ LMGF
Sbjct: 108 AMLGAVGAIAPEILGKAGLIPPETALP-WFRTGVIPPAGTYSYWADPYTLFVFEMALMGF 166
Query: 156 AETKRYMDYISPGSQTKEGSFFGLEAALEGL-EPGYPGGPLLNPLGLAKDIRNAREWKLK 214
AE +R+ D+ PGS K+ F G E L G EP YPGGPL NPLG KD ++ ++ KLK
Sbjct: 167 AEHRRFQDWAKPGSMGKQ-YFLGFEKYLGGSGEPAYPGGPLFNPLGFGKDEKSLKDLKLK 225
Query: 215 EIKNGLICLV 224
E+KNG + ++
Sbjct: 226 EVKNGRLAML 235
>gi|207853208|gb|ACI25389.1| chloroplast chlorophyll a-b binding protein 4 [Liquidambar
styraciflua]
Length = 138
Score = 127 bits (320), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 70/146 (47%), Positives = 95/146 (65%), Gaps = 8/146 (5%)
Query: 73 LAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEA 132
L GD GFDPLGL EDPE+LRWYVQAELV+ R+AM GV G+L ++L GI +P WY+A
Sbjct: 1 LPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVVGMLLPEVLTSIGIINVPKWYDA 60
Query: 133 GAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPG 192
G VE+ FAS+ TLF+++ +L + E +R+ D +PG ++ F + +L E GYPG
Sbjct: 61 GKVEY-FASSSTLFVIEFILFHYVEIRRWQDIKNPGCVNQDPIF--KQYSLAPHECGYPG 117
Query: 193 GPLLNPLGLAKDIRNAREWKLKEIKN 218
G + NPL A + E K KE+ N
Sbjct: 118 G-IFNPLNFAPTL----EAKEKELAN 138
>gi|207853236|gb|ACI25403.1| chloroplast chlorophyll a-b binding protein 4 [Semiliquidambar
cathayensis]
Length = 138
Score = 127 bits (320), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 70/146 (47%), Positives = 95/146 (65%), Gaps = 8/146 (5%)
Query: 73 LAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEA 132
L GD GFDPLGL EDPE+LRWYVQAELV+ R+AM GV G+L ++L GI +P WY+A
Sbjct: 1 LPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVVGMLLPEVLTSIGIINVPKWYDA 60
Query: 133 GAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPG 192
G E+ FAS+ TLF+++L+L + E +R+ D +PG ++ F + +L E GYPG
Sbjct: 61 GKAEY-FASSSTLFVIELILFHYVEVRRWQDIKNPGCVNQDPIF--KQYSLAPHECGYPG 117
Query: 193 GPLLNPLGLAKDIRNAREWKLKEIKN 218
G + NPL A + E K KE+ N
Sbjct: 118 G-IFNPLNFAPTL----EAKEKELAN 138
>gi|224070503|ref|XP_002303160.1| light-harvesting complex II protein Lhcb6 [Populus trichocarpa]
gi|118487218|gb|ABK95437.1| unknown [Populus trichocarpa]
gi|118489807|gb|ABK96703.1| unknown [Populus trichocarpa x Populus deltoides]
gi|222840592|gb|EEE78139.1| light-harvesting complex II protein Lhcb6 [Populus trichocarpa]
Length = 257
Score = 127 bits (319), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 85/232 (36%), Positives = 117/232 (50%), Gaps = 33/232 (14%)
Query: 17 SSFICNDVNKSSIGITSAFLPAKSGTTRRYLATVVRAQQRPTWLPGVD------PPPYLD 70
SSF+C ++ A R L V AQ + +W+P V P +LD
Sbjct: 14 SSFLCGGKRSRALSGIGATGIGSCSVGARKLTIVAAAQPKKSWIPAVKGGGSFVDPEWLD 73
Query: 71 GTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWY 130
G+L GD+GFDPLGLG+DP L+WY +AEL+H R+AMA V GI +GI W+
Sbjct: 74 GSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAW--SGIP----WF 127
Query: 131 EAGA-----VEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKE----GSFFGLEA 181
EAGA F F S L QL+LMG+ E+KR++D+ +P SQ+ E S
Sbjct: 128 EAGADPGAIAPFSFGS---LLGTQLILMGWVESKRWVDFFNPESQSVEWATPWSKTAENF 184
Query: 182 ALEGLEPGYPGGPLLNPLGLAKDIRNA---------REWKLKEIKNGLICLV 224
A + GYPGG +PLG A ++N KL EIK+ + ++
Sbjct: 185 ANATGDQGYPGGKFFDPLGFAGTLKNGVYIPDEEKLERLKLAEIKHARLAMI 236
>gi|307103837|gb|EFN52094.1| hypothetical protein CHLNCDRAFT_32710 [Chlorella variabilis]
Length = 264
Score = 127 bits (319), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 84/205 (40%), Positives = 111/205 (54%), Gaps = 17/205 (8%)
Query: 26 KSSIGITSAFLPAKSGTTRRYLATVVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLG 85
K+++ T + S ++ R VVRA+ R W PGV P YLDG LAGD+GFDP+GLG
Sbjct: 7 KTALAGTRVVAKSTSRSSARAGNVVVRAE-RSLWAPGVASPKYLDGNLAGDYGFDPMGLG 65
Query: 86 EDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEF--KFASTR 143
+PE L WY QAEL +AR+AM GVAGIL ++ I WY AG E F +
Sbjct: 66 ANPERLTWYRQAELQNARWAMLGVAGILGQEI-----INPEQWWYSAGMPENLPSFDGNK 120
Query: 144 T----LFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPL 199
+ + LLM F E +R+ D S + F + E GYPGGP +PL
Sbjct: 121 VNMGGILAWEFLLMHFVEVRRWQDIRKKDSVNADP--FNPNLKVPNPEMGYPGGP-FDPL 177
Query: 200 GLAKDIRNAREWKLKEIKNGLICLV 224
G +K N +E + KEIKNG + +V
Sbjct: 178 GFSKG--NFKEVQTKEIKNGRLAMV 200
>gi|207853258|gb|ACI25414.1| chloroplast chlorophyll a-b binding protein 4 [Semiliquidambar
cathayensis]
Length = 138
Score = 127 bits (319), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 69/146 (47%), Positives = 94/146 (64%), Gaps = 8/146 (5%)
Query: 73 LAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEA 132
L GD GFDPLGL EDPE+LRWYVQAELV+ R+AM GV G+L ++L GI +P WY+A
Sbjct: 1 LPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVVGMLLPEVLTSIGIINVPKWYDA 60
Query: 133 GAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPG 192
G E+ FAS+ TLF+++ +L + E +R+ D +PG ++ F + +L E GYPG
Sbjct: 61 GKAEY-FASSSTLFVIEFILFHYVEIRRWQDIKNPGCVNQDPIF--KQCSLAPHECGYPG 117
Query: 193 GPLLNPLGLAKDIRNAREWKLKEIKN 218
G + NPL A + E K KE+ N
Sbjct: 118 G-IFNPLNFAPTL----EAKEKELAN 138
>gi|224131950|ref|XP_002321218.1| light-harvesting complex I protein Lhca3 [Populus trichocarpa]
gi|118485656|gb|ABK94678.1| unknown [Populus trichocarpa]
gi|222861991|gb|EEE99533.1| light-harvesting complex I protein Lhca3 [Populus trichocarpa]
Length = 274
Score = 126 bits (317), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 76/190 (40%), Positives = 104/190 (54%), Gaps = 19/190 (10%)
Query: 51 VRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESL------RWYVQAELVHARF 104
V+ R W YLDG+L GDFGFDPLGL DPE +W E+++ R+
Sbjct: 49 VKQGNRQLWFASKQSLSYLDGSLPGDFGFDPLGL-SDPEGTGGFIEPKWLAYGEIINGRY 107
Query: 105 AMAGVAGILFTDLLRVTGI----RELPVWYEAGAVE-----FKFASTRTLFIVQLLLMGF 155
AM G G + ++L G+ LP W+ G + +A TLF+ ++ LMGF
Sbjct: 108 AMLGAVGAIAPEILGKAGLIPPETALP-WFRTGVIPPAGTYSYWADPYTLFVFEMALMGF 166
Query: 156 AETKRYMDYISPGSQTKEGSFFGLEAALEGL-EPGYPGGPLLNPLGLAKDIRNAREWKLK 214
AE +R D+ PGS K+ F G E L G EP YPGGPL NPLG KD ++ ++ KLK
Sbjct: 167 AEHRRLQDWAKPGSMGKQ-YFLGFEKYLGGSGEPAYPGGPLFNPLGFGKDEKSLKDLKLK 225
Query: 215 EIKNGLICLV 224
E+KNG + ++
Sbjct: 226 EVKNGRLAML 235
>gi|207853256|gb|ACI25413.1| chloroplast chlorophyll a-b binding protein 4 [Semiliquidambar
cathayensis]
Length = 138
Score = 126 bits (317), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 69/146 (47%), Positives = 94/146 (64%), Gaps = 8/146 (5%)
Query: 73 LAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEA 132
L GD GFDPLGL EDPE+LRWYVQAELV+ R+AM GV G+L ++L GI +P WY+A
Sbjct: 1 LPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVVGVLLPEVLTSIGIINVPKWYDA 60
Query: 133 GAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPG 192
G E+ FAS+ TLF+++ +L + E +R+ D +PG ++ F + +L E GYPG
Sbjct: 61 GKAEY-FASSSTLFVIEFILFHYVEIRRWQDIKNPGCVNQDPIF--KQYSLAPHECGYPG 117
Query: 193 GPLLNPLGLAKDIRNAREWKLKEIKN 218
G + NPL A + E K KE+ N
Sbjct: 118 G-IFNPLNFAPTL----EAKEKELAN 138
>gi|224054274|ref|XP_002298178.1| light-harvesting complex II protein Lhcb6 [Populus trichocarpa]
gi|118486723|gb|ABK95197.1| unknown [Populus trichocarpa]
gi|222845436|gb|EEE82983.1| light-harvesting complex II protein Lhcb6 [Populus trichocarpa]
Length = 257
Score = 126 bits (317), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 89/233 (38%), Positives = 124/233 (53%), Gaps = 35/233 (15%)
Query: 17 SSFICN-DVNKSSIGITSAFLPAKSGTTRRYLATVVRAQQRPTWLPGVD------PPPYL 69
SSF+C N++ +GI ++ + TR+ L V AQ + +W+P V P +L
Sbjct: 14 SSFLCGGKRNQALLGIGASRTGSFPVGTRK-LVVVAAAQPKKSWIPAVKGGGSLVDPEWL 72
Query: 70 DGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVW 129
DG+L GD+GFDPLGLG+DP L+WY +AEL+H R+AMA V GI +GI W
Sbjct: 73 DGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAW--SGIP----W 126
Query: 130 YEAGA-----VEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKE----GSFFGLE 180
+EAGA F F S L QLLLMG+ E+KR++D+ +P SQ+ E S
Sbjct: 127 FEAGADPGAIAPFSFGS---LLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSKTAEN 183
Query: 181 AALEGLEPGYPGGPLLNPLGLAK---------DIRNAREWKLKEIKNGLICLV 224
A + GYPGG +PLG A D+ K+ EIK+ + +V
Sbjct: 184 FANATGDQGYPGGKFFDPLGFAGTLKDGVYIPDVEKLERLKVAEIKHARLAMV 236
>gi|195613254|gb|ACG28457.1| chlorophyll a-b binding protein 8 [Zea mays]
gi|238013956|gb|ACR38013.1| unknown [Zea mays]
gi|413954858|gb|AFW87507.1| chlorophyll a-b binding protein 8 [Zea mays]
Length = 267
Score = 126 bits (316), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 84/216 (38%), Positives = 111/216 (51%), Gaps = 31/216 (14%)
Query: 37 PAKSGTTR---RYLATVVRAQQRPT---------WLPGVDPPPYLDGTLAGDFGFDPLGL 84
P +S +R R VVRA P W YLDGTL GD+GFDPLGL
Sbjct: 16 PVQSAVSRSSARKAPFVVRASSSPPAKQGADRQLWFASKQSLSYLDGTLPGDYGFDPLGL 75
Query: 85 GEDPESL------RWYVQAELVHARFAMAGVAGILFTDLLRVTGI----RELPVWYEAGA 134
DPE +W E+++ R+AM G G + ++ GI LP W++ G
Sbjct: 76 -SDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEIFGKMGIIPPETALP-WFKTGV 133
Query: 135 VE-----FKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGL-EP 188
+ +A + TLF+ + LMGFAE +R D+ +PGS K+ F GLE L G +P
Sbjct: 134 IPPAGTYNYWADSYTLFVFNMALMGFAEHRRLQDWYNPGSMGKQ-YFLGLEKFLAGSGDP 192
Query: 189 GYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
YPGGPL NPLG K + E KLKEIKNG + ++
Sbjct: 193 SYPGGPLFNPLGFGKTEKEMNELKLKEIKNGRLAML 228
>gi|207853200|gb|ACI25385.1| chloroplast chlorophyll a-b binding protein 4 [Altingia obovata]
gi|207853202|gb|ACI25386.1| chloroplast chlorophyll a-b binding protein 4 [Liquidambar
formosana]
gi|207853204|gb|ACI25387.1| chloroplast chlorophyll a-b binding protein 4 [Liquidambar
formosana]
gi|207853218|gb|ACI25394.1| chloroplast chlorophyll a-b binding protein 4 [Altingia obovata]
gi|207853220|gb|ACI25395.1| chloroplast chlorophyll a-b binding protein 4 [Altingia obovata]
gi|207853222|gb|ACI25396.1| chloroplast chlorophyll a-b binding protein 4 [Altingia obovata]
gi|207853224|gb|ACI25397.1| chloroplast chlorophyll a-b binding protein 4 [Altingia obovata]
gi|207853226|gb|ACI25398.1| chloroplast chlorophyll a-b binding protein 4 [Altingia obovata]
gi|207853228|gb|ACI25399.1| chloroplast chlorophyll a-b binding protein 4 [Altingia obovata]
gi|207853230|gb|ACI25400.1| chloroplast chlorophyll a-b binding protein 4 [Altingia obovata]
gi|207853234|gb|ACI25402.1| chloroplast chlorophyll a-b binding protein 4 [Semiliquidambar
cathayensis]
gi|207853238|gb|ACI25404.1| chloroplast chlorophyll a-b binding protein 4 [Semiliquidambar
cathayensis]
gi|207853240|gb|ACI25405.1| chloroplast chlorophyll a-b binding protein 4 [Semiliquidambar
cathayensis]
gi|207853248|gb|ACI25409.1| chloroplast chlorophyll a-b binding protein 4 [Semiliquidambar
cathayensis]
gi|207853252|gb|ACI25411.1| chloroplast chlorophyll a-b binding protein 4 [Semiliquidambar
cathayensis]
gi|207853254|gb|ACI25412.1| chloroplast chlorophyll a-b binding protein 4 [Semiliquidambar
cathayensis]
gi|207853260|gb|ACI25415.1| chloroplast chlorophyll a-b binding protein 4 [Semiliquidambar
cathayensis]
gi|207853264|gb|ACI25417.1| chloroplast chlorophyll a-b binding protein 4 [Semiliquidambar
cathayensis]
gi|207853268|gb|ACI25419.1| chloroplast chlorophyll a-b binding protein 4 [Semiliquidambar
cathayensis]
gi|207853274|gb|ACI25422.1| chloroplast chlorophyll a-b binding protein 4 [Semiliquidambar
cathayensis]
gi|207853276|gb|ACI25423.1| chloroplast chlorophyll a-b binding protein 4 [Semiliquidambar
cathayensis]
gi|207853282|gb|ACI25426.1| chloroplast chlorophyll a-b binding protein 4 [Semiliquidambar
cathayensis]
Length = 138
Score = 126 bits (316), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 69/146 (47%), Positives = 94/146 (64%), Gaps = 8/146 (5%)
Query: 73 LAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEA 132
L GD GFDPLGL EDPE+LRWYVQAELV+ R+AM GV G+L ++L GI +P WY+A
Sbjct: 1 LPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVVGMLLPEVLTSIGIINVPKWYDA 60
Query: 133 GAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPG 192
G E+ FAS+ TLF+++ +L + E +R+ D +PG ++ F + +L E GYPG
Sbjct: 61 GKAEY-FASSSTLFVIEFILFHYVEIRRWQDIKNPGCVNQDPIF--KQYSLAPHECGYPG 117
Query: 193 GPLLNPLGLAKDIRNAREWKLKEIKN 218
G + NPL A + E K KE+ N
Sbjct: 118 G-IFNPLNFAPTL----EAKEKELAN 138
>gi|356524850|ref|XP_003531041.1| PREDICTED: chlorophyll a-b binding protein CP24 10A,
chloroplastic-like isoform 1 [Glycine max]
gi|356524852|ref|XP_003531042.1| PREDICTED: chlorophyll a-b binding protein CP24 10A,
chloroplastic-like isoform 2 [Glycine max]
Length = 258
Score = 125 bits (315), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 87/236 (36%), Positives = 123/236 (52%), Gaps = 41/236 (17%)
Query: 17 SSFICNDVNKSSIGITSAFLPAKSGTT---RRYLATVVRAQQRPTWLPGVD------PPP 67
S F+C K S + +A + K G + +R + V A ++ +W+P V P
Sbjct: 15 SHFLCG--GKRSHALLAASIGGKVGASVSPKRVIVAVAAAPKK-SWIPAVKGGGSFIDPE 71
Query: 68 YLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELP 127
+LDG+L GD+GFDPLGLG+DP L+WY +AEL+H R+AMA V GI +G+
Sbjct: 72 WLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFIGQAW--SGVP--- 126
Query: 128 VWYEAGAVEFKFA--STRTLFIVQLLLMGFAETKRYMDYISPGSQ--------TKEGSFF 177
W+EAGA A S +L QLLLMG+ E+KR++D+ +P SQ +K F
Sbjct: 127 -WFEAGADPNAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPDSQSVEWATPWSKTAENF 185
Query: 178 GLEAALEGLEPGYPGGPLLNPLGLAKDIRNA---------REWKLKEIKNGLICLV 224
G E GYPGG +PLG A I++ KL EIK+ I ++
Sbjct: 186 GNSTG----EQGYPGGKFFDPLGFAGAIKDGVYIPDADKLERLKLAEIKHARIAML 237
>gi|207853250|gb|ACI25410.1| chloroplast chlorophyll a-b binding protein 4 [Semiliquidambar
cathayensis]
Length = 138
Score = 125 bits (315), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 69/146 (47%), Positives = 94/146 (64%), Gaps = 8/146 (5%)
Query: 73 LAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEA 132
L GD GFDPLGL EDPE+LRWYVQAELV+ R+AM GV G+L ++L GI +P WY+A
Sbjct: 1 LPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVVGMLLPEVLTSIGIINVPRWYDA 60
Query: 133 GAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPG 192
G E+ FAS+ TLF+++ +L + E +R+ D +PG ++ F + +L E GYPG
Sbjct: 61 GKAEY-FASSSTLFVIEFILFHYVEIRRWQDIKNPGCVNQDPIF--KQYSLAPHECGYPG 117
Query: 193 GPLLNPLGLAKDIRNAREWKLKEIKN 218
G + NPL A + E K KE+ N
Sbjct: 118 G-IFNPLNFAPTL----EAKEKELAN 138
>gi|75101782|sp|Q36718.1|CB120_HORVU RecName: Full=Chlorophyll a-b binding protein 1B-20, chloroplastic;
AltName: Full=LHCI type I CAB-1B-20; AltName:
Full=Light-harvesting complex I 20 kDa protein; Flags:
Precursor
gi|544702|gb|AAB29486.1| light-harvesting complex I, partial (chloroplast) [Hordeum vulgare]
Length = 231
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 77/188 (40%), Positives = 105/188 (55%), Gaps = 10/188 (5%)
Query: 37 PAKSGTTRRYLATVVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQ 96
PA SG+ R V Q + +WLPG+ P YLDG+L GD GFDPL L EDPE LRW+VQ
Sbjct: 15 PAASGSPRSTRRDVA-VQAKGSWLPGLQSPAYLDGSLEGDNGFDPLALAEDPEDLRWFVQ 73
Query: 97 AELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFA 156
A++V+ R+AM GVAG+L ++L G+ P W E FAS+ T V + +
Sbjct: 74 ADVVNGRWAMLGVAGMLIPEVLTKAGLMNAPEWLRLPGKETYFASSSTALRVHMSST-YV 132
Query: 157 ETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEI 216
E +R+ D +PGS ++ F +L E GYPG + NPL A E K KE+
Sbjct: 133 EIRRWQDIKNPGSVNQDPIFKSY--SLPPHECGYPGR-VFNPLNFA-----PLENKEKEL 184
Query: 217 KNGLICLV 224
NG + ++
Sbjct: 185 ANGRLAML 192
>gi|207853244|gb|ACI25407.1| chloroplast chlorophyll a-b binding protein 4 [Semiliquidambar
cathayensis]
Length = 138
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 69/146 (47%), Positives = 94/146 (64%), Gaps = 8/146 (5%)
Query: 73 LAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEA 132
L GD GFDPLGL EDPE+LRWYVQAELV+ R+AM GV G+L ++L GI +P WY+A
Sbjct: 1 LPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVVGMLLPEVLTSIGIINVPKWYDA 60
Query: 133 GAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPG 192
G E+ FAS+ TLF+++ +L + E +R+ D +PG ++ F + +L E GYPG
Sbjct: 61 GKAEY-FASSSTLFVIEFVLFHYVEIRRWQDIKNPGCVNQDPIF--KQYSLAPHECGYPG 117
Query: 193 GPLLNPLGLAKDIRNAREWKLKEIKN 218
G + NPL A + E K KE+ N
Sbjct: 118 G-IFNPLNFAPTL----EAKEKELAN 138
>gi|270308992|dbj|BAI52949.1| light-harvesting complex II protein [Citrullus lanatus subsp.
vulgaris]
Length = 255
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 83/204 (40%), Positives = 109/204 (53%), Gaps = 33/204 (16%)
Query: 45 RYLATVVRAQQRPTWLPGVD------PPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAE 98
R L V AQ + +W+P V P +LDG+L GD+GFDPLGLG+DP L+WY +AE
Sbjct: 40 RKLVVVAAAQPKKSWIPAVKGGGNLIDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAE 99
Query: 99 LVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGA-----VEFKFASTRTLFIVQLLLM 153
L+H R+AMA V GI +GI W+EAGA F F S L QLLLM
Sbjct: 100 LIHGRWAMAAVVGIFVGQAW--SGIP----WFEAGADPGAIAPFSFGS---LLGTQLLLM 150
Query: 154 GFAETKRYMDYISPGSQTKEGSFFGLEAALEGL----EPGYPGGPLLNPLGLAKDIRNA- 208
G+ E+KR++D+ +P SQ E + L A E GYPGG +PLG A I++
Sbjct: 151 GWVESKRWVDFFNPESQAVEWATPWLRTAENFANTTGEQGYPGGKFFDPLGFAGTIKDGV 210
Query: 209 --------REWKLKEIKNGLICLV 224
KL EIK+ I ++
Sbjct: 211 YIPDTEKLERLKLAEIKHARIAML 234
>gi|384253050|gb|EIE26525.1| light-harvesting chlorophyll-a/b protein of photosystem I
[Coccomyxa subellipsoidea C-169]
Length = 272
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 85/209 (40%), Positives = 117/209 (55%), Gaps = 20/209 (9%)
Query: 21 CNDVNKSSIGITSAFLPAKSGTTRRYLATVVRAQQRPTWLPGVDPPPYLDGTLAGDFGFD 80
CN +++ +G S + R TVVRA+ R WLPG D P +LDG+L GDFGFD
Sbjct: 7 CNGLSRPILG--SPLAARQVSRARPVRQTVVRAE-RALWLPGGDAPAHLDGSLPGDFGFD 63
Query: 81 PLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAG---AVEF 137
PLGLG DPE L W+ ++E VHAR+AM VAGI +++R WYEA + F
Sbjct: 64 PLGLGADPERLAWFAESERVHARWAMLAVAGIAVQEVVRPDVF-----WYEAALKSPMPF 118
Query: 138 KFASTRTLFIV--QLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPL 195
+ L +V +L M F E +R D+ +PGSQ ++ F + L E GYPGG +
Sbjct: 119 GNSPAAILGLVAFELFAMHFVEVRRAYDFKNPGSQDQDPIFSNNK--LPKHEVGYPGG-I 175
Query: 196 LNPLGLAKDIRNAREWKLKEIKNGLICLV 224
P+ + D+ E KLKEIKNG + ++
Sbjct: 176 FAPV-IPGDL---AELKLKEIKNGRLAML 200
>gi|207853272|gb|ACI25421.1| chloroplast chlorophyll a-b binding protein 4 [Semiliquidambar
cathayensis]
Length = 138
Score = 125 bits (314), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 69/146 (47%), Positives = 93/146 (63%), Gaps = 8/146 (5%)
Query: 73 LAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEA 132
L GD GFDPLGL EDPE+LRWYVQAELV+ R+AM GV G L ++L GI +P WY+A
Sbjct: 1 LPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVVGTLLPEVLTSIGIINVPKWYDA 60
Query: 133 GAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPG 192
G E+ FAS+ TLF+++ +L + E +R+ D +PG ++ F + +L E GYPG
Sbjct: 61 GKAEY-FASSSTLFVIEFILFHYVEIRRWQDIKNPGCVNQDPIF--KQYSLAPHECGYPG 117
Query: 193 GPLLNPLGLAKDIRNAREWKLKEIKN 218
G + NPL A + E K KE+ N
Sbjct: 118 G-IFNPLNFAPTL----EAKEKELAN 138
>gi|207853232|gb|ACI25401.1| chloroplast chlorophyll a-b binding protein 4 [Semiliquidambar
cathayensis]
Length = 138
Score = 125 bits (314), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 69/146 (47%), Positives = 93/146 (63%), Gaps = 8/146 (5%)
Query: 73 LAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEA 132
L GD GFDPLGL EDPE+LRWYVQAELV+ R+AM GV G+L ++L GI +P WY+A
Sbjct: 1 LPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVVGMLLPEVLTSIGIINVPKWYDA 60
Query: 133 GAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPG 192
G E FAS+ TLF+++ +L + E +R+ D +PG ++ F + +L E GYPG
Sbjct: 61 GKAE-HFASSSTLFVIEFILFHYVEIRRWQDIKNPGCVNQDPIF--KQYSLAPHECGYPG 117
Query: 193 GPLLNPLGLAKDIRNAREWKLKEIKN 218
G + NPL A + E K KE+ N
Sbjct: 118 G-IFNPLNFAPTL----EAKEKELAN 138
>gi|207853262|gb|ACI25416.1| chloroplast chlorophyll a-b binding protein 4 [Semiliquidambar
cathayensis]
Length = 138
Score = 125 bits (314), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 69/146 (47%), Positives = 94/146 (64%), Gaps = 8/146 (5%)
Query: 73 LAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEA 132
L GD GFDPLGL EDPE+LRWYVQAELV+ R+AM GV G+L ++L GI +P WY+A
Sbjct: 1 LPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVVGMLLPEVLTSIGIINVPKWYDA 60
Query: 133 GAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPG 192
G E+ FAS+ TLF+++ +L + E +R+ D +PG ++ F + +L E GYPG
Sbjct: 61 GKAEY-FASSSTLFVIEFILFHYVEIRRWQDIKNPGCVNQDPIF--KQYSLAPHECGYPG 117
Query: 193 GPLLNPLGLAKDIRNAREWKLKEIKN 218
G + NPL A + E K KE+ N
Sbjct: 118 G-ISNPLNFAPTL----EAKEKELAN 138
>gi|207853242|gb|ACI25406.1| chloroplast chlorophyll a-b binding protein 4 [Semiliquidambar
cathayensis]
Length = 138
Score = 125 bits (314), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 69/146 (47%), Positives = 93/146 (63%), Gaps = 8/146 (5%)
Query: 73 LAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEA 132
L GD GFDPLGL EDPE+LRWYVQAELV+ R+AM GV G+L + L GI +P WY+A
Sbjct: 1 LPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVVGMLLPEALTSIGIINVPKWYDA 60
Query: 133 GAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPG 192
G E+ FAS+ TLF+++ +L + E +R+ D +PG ++ F + +L E GYPG
Sbjct: 61 GKAEY-FASSSTLFVIEFILFHYVEIRRWQDIKNPGCVNQDPIF--KQYSLAPHECGYPG 117
Query: 193 GPLLNPLGLAKDIRNAREWKLKEIKN 218
G + NPL A + E K KE+ N
Sbjct: 118 G-IFNPLNFAPTL----EAKEKELAN 138
>gi|207853266|gb|ACI25418.1| chloroplast chlorophyll a-b binding protein 4 [Semiliquidambar
cathayensis]
Length = 138
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 69/146 (47%), Positives = 93/146 (63%), Gaps = 8/146 (5%)
Query: 73 LAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEA 132
L GD GFDPLGL EDPE+LRWYVQAELV+ R+AM GV G+L ++L GI +P WY+A
Sbjct: 1 LPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVVGMLLPEVLTSIGIINVPKWYDA 60
Query: 133 GAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPG 192
G E+ FAS+ TLF+++ L + E +R+ D +PG ++ F + +L E GYPG
Sbjct: 61 GKAEY-FASSSTLFVIEFTLFHYVEIRRWQDIKNPGCVNQDPIF--KQYSLAPHECGYPG 117
Query: 193 GPLLNPLGLAKDIRNAREWKLKEIKN 218
G + NPL A + E K KE+ N
Sbjct: 118 G-IFNPLNFAPTL----EAKEKELAN 138
>gi|207853278|gb|ACI25424.1| chloroplast chlorophyll a-b binding protein 4 [Semiliquidambar
cathayensis]
Length = 138
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 69/146 (47%), Positives = 94/146 (64%), Gaps = 8/146 (5%)
Query: 73 LAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEA 132
L GD GFDPLGL EDPE+LRWYVQAELV+ R+AM GV G+L ++L GI +P WY+A
Sbjct: 1 LPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVVGMLLPEVLTGIGIINVPKWYDA 60
Query: 133 GAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPG 192
G E+ FAS+ TLF+++ +L + E +R+ D +PG ++ F + +L E GYPG
Sbjct: 61 GKAEY-FASSSTLFVIEFILFHYVEIRRWQDIKNPGCVNQDPIF--KQYSLAPHECGYPG 117
Query: 193 GPLLNPLGLAKDIRNAREWKLKEIKN 218
G + NPL A + E K KE+ N
Sbjct: 118 G-IFNPLNFAPTL----EAKEKELAN 138
>gi|449446427|ref|XP_004140973.1| PREDICTED: chlorophyll a-b binding protein CP24 10A,
chloroplastic-like [Cucumis sativus]
gi|449497079|ref|XP_004160305.1| PREDICTED: chlorophyll a-b binding protein CP24 10A,
chloroplastic-like [Cucumis sativus]
Length = 255
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 83/202 (41%), Positives = 109/202 (53%), Gaps = 33/202 (16%)
Query: 47 LATVVRAQQRPTWLPGVD------PPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELV 100
L V AQ + +WLPGV P +LDG+L GD+GFDPLGLG+DP L+WY +AEL+
Sbjct: 42 LVIVAAAQPKKSWLPGVRGGGNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELI 101
Query: 101 HARFAMAGVAGILFTDLLRVTGIRELPVWYEAGA-----VEFKFASTRTLFIVQLLLMGF 155
H R+AMA V GI +GI W+EAGA F F S L QLLLMG+
Sbjct: 102 HGRWAMAAVVGIFVGQAW--SGIP----WFEAGADPGAIAPFSFGS---LLGTQLLLMGW 152
Query: 156 AETKRYMDYISPGSQTKE----GSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNA--- 208
E+KR++D+ +P SQ+ E S A E GYPGG +PLG A +++
Sbjct: 153 VESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLGFAGTLKDGVYI 212
Query: 209 ------REWKLKEIKNGLICLV 224
KL EIK+ I ++
Sbjct: 213 ADTEKLERLKLAEIKHARIAML 234
>gi|8954298|gb|AAD27882.2|AF139470_1 chlorophyll a/b-binding protein CP24 precursor [Vigna radiata]
Length = 258
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 85/229 (37%), Positives = 118/229 (51%), Gaps = 27/229 (11%)
Query: 17 SSFICNDVNKSSIGITSAFLPAKSGTTRRYLATVVRAQQRPTWLPGVD------PPPYLD 70
SSF+ ++ TS + R L V A + +W+PGV P +LD
Sbjct: 15 SSFLSGGSRSQTLLATSIGGKVGVAVSPRRLIVVAAAAPKKSWIPGVRGGGNLVDPEWLD 74
Query: 71 GTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWY 130
G+L GDFGFDPLGLG+DP L+WY +AEL+H R+AMA V GI +G+ W+
Sbjct: 75 GSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAW--SGVP----WF 128
Query: 131 EAGAVEFKFA--STRTLFIVQLLLMGFAETKRYMDYISPGSQTKE----GSFFGLEAALE 184
EAGA A S +L QL+LMG+ E+KR++D+ +P SQ+ E S A
Sbjct: 129 EAGADPNAIAPFSFGSLLGTQLILMGWVESKRWVDFFNPDSQSVEWATPWSKTAENFANA 188
Query: 185 GLEPGYPGGPLLNPLGLAKDIRNA---------REWKLKEIKNGLICLV 224
E GYPGG +PLG A +++ KL EIK+ I ++
Sbjct: 189 TGEQGYPGGKFFDPLGFAGTLKDGVYIPDTEKLERLKLAEIKHARIAML 237
>gi|207853270|gb|ACI25420.1| chloroplast chlorophyll a-b binding protein 4 [Semiliquidambar
cathayensis]
Length = 138
Score = 124 bits (312), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 68/146 (46%), Positives = 94/146 (64%), Gaps = 8/146 (5%)
Query: 73 LAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEA 132
L GD GFDPLGL EDPE+LRWYVQA+LV+ R+AM GV G+L ++L GI +P WY+A
Sbjct: 1 LPGDNGFDPLGLAEDPENLRWYVQAKLVNGRWAMLGVVGMLLPEVLTSIGIINVPKWYDA 60
Query: 133 GAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPG 192
G E+ FAS+ TLF+++ +L + E +R+ D +PG ++ F + +L E GYPG
Sbjct: 61 GKAEY-FASSSTLFVIEFILFHYVEIRRWQDIKNPGCVNQDPIF--KQYSLAPHECGYPG 117
Query: 193 GPLLNPLGLAKDIRNAREWKLKEIKN 218
G + NPL A + E K KE+ N
Sbjct: 118 G-IFNPLNFAPTL----EAKEKELAN 138
>gi|195617280|gb|ACG30470.1| chlorophyll a-b binding protein CP24 [Zea mays]
gi|195639966|gb|ACG39451.1| chlorophyll a-b binding protein CP24 [Zea mays]
Length = 244
Score = 124 bits (312), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 82/202 (40%), Positives = 108/202 (53%), Gaps = 27/202 (13%)
Query: 44 RRYLATVVRAQQRPTWLPGVDP------PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQA 97
RR L A + +W+P + PP+LDG+L GDFGFDPLGLG+DP L+WY +A
Sbjct: 28 RRALVIAAAAAAKKSWIPAIKSDAEIVNPPWLDGSLPGDFGFDPLGLGKDPAFLKWYREA 87
Query: 98 ELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFA--STRTLFIVQLLLMGF 155
EL+H R+AMA V GI +GI W+EAGA A S +L QLLLMG+
Sbjct: 88 ELIHGRWAMAAVLGIFVGQAW--SGIP----WFEAGADPSAIAPFSFGSLLGTQLLLMGW 141
Query: 156 AETKRYMDYISPGSQTKEGSFFGLEAALEGL----EPGYPGGPLLNPLGLA--------- 202
E+KR++D+ +P SQ E + A E GYPGG +PLGLA
Sbjct: 142 VESKRWVDFFNPDSQAVEWATPWSRTAENFANFTGEQGYPGGKFFDPLGLAGTVKDGVYI 201
Query: 203 KDIRNAREWKLKEIKNGLICLV 224
D+ KL EIK+ I ++
Sbjct: 202 PDVDKLERLKLAEIKHARIAML 223
>gi|207853206|gb|ACI25388.1| chloroplast chlorophyll a-b binding protein 4 [Liquidambar
styraciflua]
gi|207853210|gb|ACI25390.1| chloroplast chlorophyll a-b binding protein 4 [Liquidambar
styraciflua]
gi|207853212|gb|ACI25391.1| chloroplast chlorophyll a-b binding protein 4 [Liquidambar
styraciflua]
gi|207853214|gb|ACI25392.1| chloroplast chlorophyll a-b binding protein 4 [Liquidambar
styraciflua]
gi|207853216|gb|ACI25393.1| chloroplast chlorophyll a-b binding protein 4 [Liquidambar
styraciflua]
Length = 138
Score = 124 bits (312), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 68/146 (46%), Positives = 93/146 (63%), Gaps = 8/146 (5%)
Query: 73 LAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEA 132
L GD GFDPLGL EDPE+LRWYVQAELV+ R+AM GV G+L ++ GI +P WY+A
Sbjct: 1 LPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVVGMLLPEVFTSIGIINVPKWYDA 60
Query: 133 GAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPG 192
G VE+ FAS+ TLF+++ +L + E +R+ D +PG ++ F + +L E GYPG
Sbjct: 61 GKVEY-FASSTTLFVIEFILFHYVEIRRWQDIKNPGCVNQDPIF--KQYSLPPHECGYPG 117
Query: 193 GPLLNPLGLAKDIRNAREWKLKEIKN 218
+ NPL A + E K KE+ N
Sbjct: 118 S-IFNPLNFAPTL----EAKEKELAN 138
>gi|357445799|ref|XP_003593177.1| Chloroplast chlorophyll a/b-binding protein CP24 [Medicago
truncatula]
gi|355482225|gb|AES63428.1| Chloroplast chlorophyll a/b-binding protein CP24 [Medicago
truncatula]
Length = 261
Score = 124 bits (312), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 85/241 (35%), Positives = 122/241 (50%), Gaps = 34/241 (14%)
Query: 5 VGRGFLLQPSSSSSFICNDVNKSSIGITSAFLPAKSGTTRRYLATVVRAQQRPTWLPGVD 64
+G FL S + + + +G+ + G+ +R + + + +W+PGV
Sbjct: 13 LGSSFLSGGKRSQTLLATTAIGAKVGVAA-------GSPKRLIVAAAASAPKKSWIPGVR 65
Query: 65 ------PPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLL 118
P +LDG+L GDFGFDPLGLG+DP L+WY +AEL+H R+AMA V GI
Sbjct: 66 FGGNLVDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAW 125
Query: 119 RVTGIRELPVWYEAGAVEFKFA--STRTLFIVQLLLMGFAETKRYMDYISPGSQTKE--- 173
+G+ W+EAGA A S TL QL+LMG+ E+KR++D+ +P SQ+ E
Sbjct: 126 --SGVP----WFEAGADPNAIAPFSFGTLLGTQLILMGWVESKRWVDFFNPDSQSIEWAT 179
Query: 174 -GSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNA---------REWKLKEIKNGLICL 223
S A E GYPGG +PL LA I N KL EIK+ + +
Sbjct: 180 PWSKTAENFANATGEQGYPGGKFFDPLSLAGTIENGVYIPDTEKLERLKLAEIKHARLAM 239
Query: 224 V 224
+
Sbjct: 240 L 240
>gi|293337343|gb|ADE42967.1| type III chlorophyll a/b binding protein [Gardenia jasminoides]
Length = 274
Score = 124 bits (311), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 77/208 (37%), Positives = 111/208 (53%), Gaps = 28/208 (13%)
Query: 42 TTRRYLATVVRAQQRPT---------WLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESL- 91
++ R ++ VRA+ P W YLDG+L GD+GFDPLGL DPE
Sbjct: 31 SSSRKVSFAVRAEATPPAKQGADRQLWFASKQSLSYLDGSLPGDYGFDPLGL-SDPEGTG 89
Query: 92 -----RWYVQAELVHARFAMAGVAGILFTDLLRVTGI----RELPVWYEAGAVEFK---- 138
W E+++ R+AM G G + ++L G+ LP W++ G +
Sbjct: 90 GFIEPSWLAYGEIINGRYAMLGAVGAIAPEILGKAGLIPPETALP-WFKTGVIPPAGTYD 148
Query: 139 -FASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGL-EPGYPGGPLL 196
+A TLF+ +L LMGFAE +R+ D+ PG +K+ F G E EG P YPGGPL
Sbjct: 149 YWADPYTLFVFELALMGFAEHRRFQDFQKPGCLSKQ-YFLGFEKYFEGSGNPIYPGGPLF 207
Query: 197 NPLGLAKDIRNAREWKLKEIKNGLICLV 224
NPLG KD ++ ++ KLKE+KNG + ++
Sbjct: 208 NPLGFGKDEKSLKDLKLKEVKNGRLAML 235
>gi|159479992|ref|XP_001698070.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
gi|40714517|dbj|BAD06922.1| light-harvesting chlorophyll-a/b protein of photosystem I
[Chlamydomonas reinhardtii]
gi|158273869|gb|EDO99655.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
Length = 257
Score = 124 bits (310), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 76/183 (41%), Positives = 104/183 (56%), Gaps = 14/183 (7%)
Query: 42 TTRRYLATVVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVH 101
+ RR + V +A RP WLPG PP +L G L GDFGFDPLGLG + ESL+W+ ++ELVH
Sbjct: 17 SARR--SVVAKASSRPLWLPGSTPPAHLKGDLPGDFGFDPLGLGANAESLKWFKESELVH 74
Query: 102 ARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRY 161
+R+AMA VAGIL +++R WY AG L V+ LM + E +R+
Sbjct: 75 SRWAMAAVAGILVQEIVRPDVF-----WYNAGKEVESPLGPLGLLAVEFFLMHWVEVRRW 129
Query: 162 MDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLI 221
D PGS ++ F + L E GYPGG + P + D+ E K+KEIKNG +
Sbjct: 130 QDLRKPGSVDQDPIFS--QYKLPPHEVGYPGG-VFAPF-IPGDL---AELKVKEIKNGRL 182
Query: 222 CLV 224
++
Sbjct: 183 AML 185
>gi|207853246|gb|ACI25408.1| chloroplast chlorophyll a-b binding protein 4 [Semiliquidambar
cathayensis]
Length = 138
Score = 124 bits (310), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 68/146 (46%), Positives = 93/146 (63%), Gaps = 8/146 (5%)
Query: 73 LAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEA 132
L GD GFDPLGL EDPE+LRWYVQAELV+ R+AM GV G+L ++L GI +P WY+A
Sbjct: 1 LPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVVGMLLPEVLTSIGIINVPKWYDA 60
Query: 133 GAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPG 192
G E+ AS+ TLF+++ +L + E +R+ D +PG ++ F + +L E GYPG
Sbjct: 61 GKAEYS-ASSSTLFVIEFILFHYVEIRRWQDIKNPGCVNQDPIF--KQYSLAPHECGYPG 117
Query: 193 GPLLNPLGLAKDIRNAREWKLKEIKN 218
G + NPL A + E K KE+ N
Sbjct: 118 G-IFNPLNFAPTL----EAKEKELAN 138
>gi|242070955|ref|XP_002450754.1| hypothetical protein SORBIDRAFT_05g017165 [Sorghum bicolor]
gi|241936597|gb|EES09742.1| hypothetical protein SORBIDRAFT_05g017165 [Sorghum bicolor]
Length = 88
Score = 124 bits (310), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 60/85 (70%), Positives = 67/85 (78%), Gaps = 6/85 (7%)
Query: 38 AKSGTTRRYLATVVR------AQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESL 91
A++ +R YL+ QRPTWLPG+DPPP+LDGTL GDFGFDPLGLGEDP SL
Sbjct: 4 ARNNHSRLYLSRARVVAVRAAGTQRPTWLPGLDPPPHLDGTLPGDFGFDPLGLGEDPASL 63
Query: 92 RWYVQAELVHARFAMAGVAGILFTD 116
+WYVQAELVH RFAMAGVAGILFTD
Sbjct: 64 KWYVQAELVHCRFAMAGVAGILFTD 88
>gi|255629343|gb|ACU15016.1| unknown [Glycine max]
Length = 247
Score = 124 bits (310), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 82/201 (40%), Positives = 109/201 (54%), Gaps = 27/201 (13%)
Query: 45 RYLATVVRAQQRPTWLPGVD------PPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAE 98
R L V A + +WLPGV P +LDG+L GD+GFDPLGLG+DP L+WY +AE
Sbjct: 46 RRLIVVAAAAPKKSWLPGVRGGGNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAE 105
Query: 99 LVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFA--STRTLFIVQLLLMGFA 156
L+H R+AMA V GI +G+ W+EAGA A S TL QL+LMG+
Sbjct: 106 LIHGRWAMAAVLGIFVGQAW--SGVP----WFEAGADPNAIAPFSFGTLLGTQLILMGWV 159
Query: 157 ETKRYMDYISPGSQTKE----GSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNA---- 208
E+KR++D+ +P SQ+ E S A E GYPGG +PL LA I++
Sbjct: 160 ESKRWVDFFNPDSQSVEWATPWSRTSENFANATGEQGYPGGKFFDPLSLAGTIKDGVYIP 219
Query: 209 -----REWKLKEIKNGLICLV 224
KL EIK+ I ++
Sbjct: 220 DTEKLERLKLAEIKHARIAML 240
>gi|356525886|ref|XP_003531552.1| PREDICTED: chlorophyll a-b binding protein CP24 10A, chloroplastic
[Glycine max]
Length = 261
Score = 123 bits (309), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 82/201 (40%), Positives = 109/201 (54%), Gaps = 27/201 (13%)
Query: 45 RYLATVVRAQQRPTWLPGVD------PPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAE 98
R L V A + +WLPGV P +LDG+L GD+GFDPLGLG+DP L+WY +AE
Sbjct: 46 RRLIVVAAAAPKKSWLPGVRGGGNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAE 105
Query: 99 LVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFA--STRTLFIVQLLLMGFA 156
L+H R+AMA V GI +G+ W+EAGA A S TL QL+LMG+
Sbjct: 106 LIHGRWAMAAVLGIFVGQAW--SGVP----WFEAGADPNAIAPFSFGTLLGTQLILMGWV 159
Query: 157 ETKRYMDYISPGSQTKE----GSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNA---- 208
E+KR++D+ +P SQ+ E S A E GYPGG +PL LA I++
Sbjct: 160 ESKRWVDFFNPDSQSVEWATPWSRTSENFANATGEQGYPGGKFFDPLSLAGTIKDGVYIP 219
Query: 209 -----REWKLKEIKNGLICLV 224
KL EIK+ I ++
Sbjct: 220 DTEKLERLKLAEIKHARIAML 240
>gi|116791821|gb|ABK26121.1| unknown [Picea sitchensis]
gi|224284036|gb|ACN39756.1| unknown [Picea sitchensis]
gi|224284482|gb|ACN39975.1| unknown [Picea sitchensis]
gi|224284909|gb|ACN40184.1| unknown [Picea sitchensis]
gi|224285218|gb|ACN40335.1| unknown [Picea sitchensis]
gi|224285824|gb|ACN40626.1| unknown [Picea sitchensis]
Length = 289
Score = 123 bits (309), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 76/190 (40%), Positives = 104/190 (54%), Gaps = 19/190 (10%)
Query: 51 VRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPE------SLRWYVQAELVHARF 104
V+ R W YLDG+L GD+GFDPLGL DPE W E+++ R+
Sbjct: 63 VKQGDRQLWFASKQSLSYLDGSLPGDYGFDPLGL-MDPEGPGGFIEPGWLAYGEIINGRY 121
Query: 105 AMAGVAGILFTDLLRVTGI----RELPVWYEAGAVEFK-----FASTRTLFIVQLLLMGF 155
AM G G + ++L G+ LP W+ G + +A TLF++++ LMGF
Sbjct: 122 AMLGAVGAIAPEILGKLGLIPQETALP-WFRTGVIPPAGTYDYWADPFTLFVLEMALMGF 180
Query: 156 AETKRYMDYISPGSQTKEGSFFGLEAALEGL-EPGYPGGPLLNPLGLAKDIRNAREWKLK 214
AE +R DY PGS +K+ F G E L G P YPGGPL NPLG KD ++ +E KLK
Sbjct: 181 AEHRRLQDYRYPGSMSKQ-YFLGFEKYLGGSGNPSYPGGPLFNPLGFGKDEKSMKELKLK 239
Query: 215 EIKNGLICLV 224
E+KNG + ++
Sbjct: 240 EVKNGRLAML 249
>gi|302837618|ref|XP_002950368.1| light harvesting complex a protein [Volvox carteri f. nagariensis]
gi|5902598|gb|AAD55569.1|AF110787_1 light harvesting complex a protein [Volvox carteri f. nagariensis]
gi|300264373|gb|EFJ48569.1| light harvesting complex a protein [Volvox carteri f. nagariensis]
Length = 214
Score = 123 bits (309), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 73/175 (41%), Positives = 96/175 (54%), Gaps = 29/175 (16%)
Query: 50 VVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGV 109
V A RPTWLPG+ PP +L G+LAGD GFDPLGLG+D L+WY +AE + R+AM V
Sbjct: 22 VCAATARPTWLPGLSPPAHLKGSLAGDSGFDPLGLGQDEGRLKWYAEAEKTNGRWAMMAV 81
Query: 110 AGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGS 169
GIL +LL VT P WYEAGA E+ ST L ++ ++MGF E KRY + + G+
Sbjct: 82 TGILGQELLGVT-----PSWYEAGAKEYDIPST-PLTAIEFIVMGFLEIKRYQGFKTTGT 135
Query: 170 QTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
G +P +P GL N+ KE+KNG + +V
Sbjct: 136 --------------SGFINSFP----FDPAGL-----NSASMATKEVKNGRLAMV 167
>gi|351728089|ref|NP_001236415.1| uncharacterized protein LOC100527463 [Glycine max]
gi|255632410|gb|ACU16555.1| unknown [Glycine max]
Length = 259
Score = 123 bits (309), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 81/201 (40%), Positives = 108/201 (53%), Gaps = 27/201 (13%)
Query: 45 RYLATVVRAQQRPTWLPGVD------PPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAE 98
R L V A + +WLPGV P +LDG+L GD+GFDPLGLG+DP L+WY +AE
Sbjct: 45 RRLIVVAAAAPKKSWLPGVRGGGNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAE 104
Query: 99 LVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFA--STRTLFIVQLLLMGFA 156
L+H R+AMA V GI +G+ W+EAGA A S TL QL+LMG+
Sbjct: 105 LIHGRWAMAAVLGIFVGQAW--SGVP----WFEAGADPNAIAPFSFGTLLGTQLILMGWV 158
Query: 157 ETKRYMDYISPGSQTKE----GSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNA---- 208
E+KR++D+ +P SQ+ E S A E GYPGG +PL A I++
Sbjct: 159 ESKRWVDFFNPDSQSVEWATPWSRTAENFANASGEHGYPGGKFFDPLSFAGTIKDGVYIP 218
Query: 209 -----REWKLKEIKNGLICLV 224
KL EIK+ I ++
Sbjct: 219 DTEKLERLKLAEIKHARIAML 239
>gi|255646598|gb|ACU23773.1| unknown [Glycine max]
Length = 258
Score = 123 bits (308), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 86/236 (36%), Positives = 122/236 (51%), Gaps = 41/236 (17%)
Query: 17 SSFICNDVNKSSIGITSAFLPAKSGTT---RRYLATVVRAQQRPTWLPGVD------PPP 67
S F+C K S + +A + K G + +R + V A ++ +W+P V P
Sbjct: 15 SHFLCG--GKRSHALLAASIGGKVGASVSPKRVIVAVAAAPKK-SWIPAVKGGGSFIDPE 71
Query: 68 YLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELP 127
+LDG+L GD+GFDPLGLG+DP L+WY +AEL+H R+AMA V GI +G+
Sbjct: 72 WLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFIGQAW--SGVP--- 126
Query: 128 VWYEAGAVEFKFA--STRTLFIVQLLLMGFAETKRYMDYISPGS--------QTKEGSFF 177
W+EAGA A S +L QLLLMG+ E+KR++D+ +P S +K F
Sbjct: 127 -WFEAGADPNAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPDSLSVEWATPWSKTAENF 185
Query: 178 GLEAALEGLEPGYPGGPLLNPLGLAKDIRNA---------REWKLKEIKNGLICLV 224
G E GYPGG +PLG A I++ KL EIK+ I ++
Sbjct: 186 GNSTG----EQGYPGGKFFDPLGFAGAIKDGVYIPDADKLERLKLAEIKHARIAML 237
>gi|87313221|gb|ABD37907.1| light-harvesting chlorophyll-a/b binding protein Lhca5
[Chlamydomonas incerta]
Length = 257
Score = 123 bits (308), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 76/183 (41%), Positives = 103/183 (56%), Gaps = 14/183 (7%)
Query: 42 TTRRYLATVVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVH 101
+ RR + V +A RP WLPG PP +L G L GDFGFDPLGLG + ESL+W+ ++ELVH
Sbjct: 17 SARR--SVVSKASSRPLWLPGSTPPAHLKGELPGDFGFDPLGLGANAESLKWFKESELVH 74
Query: 102 ARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRY 161
R+AMA VAGIL +++R WY AG L V+ LM + E +R+
Sbjct: 75 CRWAMAAVAGILVQEIVRPDVF-----WYNAGKEVESPLGPLGLLAVEFFLMHWVELRRW 129
Query: 162 MDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLI 221
D PGS ++ F + L E GYPGG + P + D+ E K+KEIKNG +
Sbjct: 130 QDLRKPGSVDQDPIFS--QYKLPAHEVGYPGG-VFAPF-IPGDL---AELKVKEIKNGRL 182
Query: 222 CLV 224
++
Sbjct: 183 AML 185
>gi|207853280|gb|ACI25425.1| chloroplast chlorophyll a-b binding protein 4 [Semiliquidambar
cathayensis]
Length = 138
Score = 123 bits (308), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 68/146 (46%), Positives = 93/146 (63%), Gaps = 8/146 (5%)
Query: 73 LAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEA 132
L GD GFDPLGL EDP +LRWYVQAELV+ R+AM GV G+L ++L GI +P WY+A
Sbjct: 1 LPGDNGFDPLGLAEDPGNLRWYVQAELVNGRWAMLGVVGMLLPEVLTSIGIINVPKWYDA 60
Query: 133 GAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPG 192
G E+ FAS+ TLF+++ +L + E +R+ D +PG ++ F + +L E GYPG
Sbjct: 61 GKAEY-FASSSTLFVIEFILFHYVEIRRWQDIKNPGCVNQDPIF--KQYSLAPHECGYPG 117
Query: 193 GPLLNPLGLAKDIRNAREWKLKEIKN 218
G + NPL A + E K KE+ N
Sbjct: 118 G-IFNPLNFAPTL----EAKEKELAN 138
>gi|541565|gb|AAA57542.1| PSI type II chlorophyll a/b-binding protein [Arabidopsis thaliana]
Length = 271
Score = 122 bits (307), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 66/158 (41%), Positives = 96/158 (60%), Gaps = 4/158 (2%)
Query: 68 YLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELP 127
+LDG+L GDFGFDP GLG DP++L+W+ QAEL+H+R+AM V GI+ + L G E
Sbjct: 78 WLDGSLPGDFGFDPFGLGSDPDTLKWFAQAELIHSRWAMLAVTGIIIPECLERLGFIENF 137
Query: 128 VWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLE 187
WY+AG+ E+ FA + TLF+ Q++LMG+AE +R+ D I PGS E + +
Sbjct: 138 SWYDAGSREY-FADSTTLFVAQMVLMGWAEGRRWADLIKPGSVDIEPKY--PHKVNPKPD 194
Query: 188 PGYPGGPLLNPLGLAK-DIRNAREWKLKEIKNGLICLV 224
GYPGG + + + + KEIKNG + ++
Sbjct: 195 AGYPGGLWFDFMMWGRGSPEPVMVLRTKEIKNGRLAML 232
>gi|255585659|ref|XP_002533515.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223526625|gb|EEF28871.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 256
Score = 122 bits (307), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 86/245 (35%), Positives = 124/245 (50%), Gaps = 47/245 (19%)
Query: 5 VGRGFLLQPSSSSSFICN-DVNKSSIGITSAFLPAKSGTTRRYLATVVRAQQRPTWLPGV 63
+G FL P S + + N+++ G ++ F+ V+ AQ + +W+P V
Sbjct: 13 LGSSFLRGPKRSHALLSAIGANRTASGASTKFV-------------VMAAQPKKSWIPAV 59
Query: 64 D------PPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDL 117
P +LDG+L GD+GFDPLGLG+DP L+WY +AEL+H R+AMA V GI
Sbjct: 60 KGGGNFIDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVIGIFVGQA 119
Query: 118 LRVTGIRELPVWYEAGA-----VEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTK 172
+GI W+EAGA F F S L QL+LMG+ E+KR++D+ +P SQ+
Sbjct: 120 W--SGIP----WFEAGADPGAIAPFSFGS---LLGTQLILMGWVESKRWVDFFNPDSQSV 170
Query: 173 E----GSFFGLEAALEGLEPGYPGGPLLNPLGLA---------KDIRNAREWKLKEIKNG 219
E S A E GYPGG +PLG A D+ K+ EIK+
Sbjct: 171 EWATPWSRTSENFANATGEQGYPGGKFFDPLGFAGTLKDGVYIPDVEKLERLKVAEIKHA 230
Query: 220 LICLV 224
+ ++
Sbjct: 231 RLAML 235
>gi|49388156|dbj|BAD25284.1| putative chlorophyll a/b-binding protein type III precursor [Oryza
sativa Japonica Group]
gi|49388341|dbj|BAD25451.1| putative chlorophyll a/b-binding protein type III precursor [Oryza
sativa Japonica Group]
gi|125538483|gb|EAY84878.1| hypothetical protein OsI_06243 [Oryza sativa Indica Group]
gi|125581168|gb|EAZ22099.1| hypothetical protein OsJ_05758 [Oryza sativa Japonica Group]
gi|215678980|dbj|BAG96410.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215679371|dbj|BAG96511.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215686386|dbj|BAG87647.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737482|dbj|BAG96612.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737505|dbj|BAG96635.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737512|dbj|BAG96642.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737560|dbj|BAG96690.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737570|dbj|BAG96700.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737580|dbj|BAG96710.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737621|dbj|BAG96751.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737634|dbj|BAG96764.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737653|dbj|BAG96783.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737729|dbj|BAG96859.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737785|dbj|BAG96915.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215765646|dbj|BAG87343.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215767462|dbj|BAG99690.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 269
Score = 122 bits (307), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 84/205 (40%), Positives = 108/205 (52%), Gaps = 32/205 (15%)
Query: 37 PAKSGTTRRYLATVVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESL----- 91
PAK G R+ W YLDGTL GDFGFDPLGL DPE
Sbjct: 41 PAKQGADRQ------------LWFASKQSLSYLDGTLPGDFGFDPLGL-SDPEGTGGFIE 87
Query: 92 -RWYVQAELVHARFAMAGVAGILFTDLLRVTGI----RELPVWYEAGAVE-----FKFAS 141
RW E+ + R AM GV G++ +LL G+ +P W++ G + +A
Sbjct: 88 PRWLAYGEVFNGRTAMMGVVGMVAPELLGKLGLVPAETAIP-WFQTGVIPPAGTYTYWAD 146
Query: 142 TRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGL-EPGYPGGPLLNPLG 200
TLF+ +L L+GFAE +R+ D+ +PGS K+ F GLE L G EP YPGGPL NPLG
Sbjct: 147 PYTLFVFELALVGFAEHRRFQDWYTPGSMGKQ-YFLGLEKYLAGSGEPAYPGGPLFNPLG 205
Query: 201 LA-KDIRNAREWKLKEIKNGLICLV 224
K +E KLKEIKNG + ++
Sbjct: 206 FGTKSEAEMKELKLKEIKNGRLAML 230
>gi|302848571|ref|XP_002955817.1| hypothetical protein VOLCADRAFT_106964 [Volvox carteri f.
nagariensis]
gi|300258785|gb|EFJ43018.1| hypothetical protein VOLCADRAFT_106964 [Volvox carteri f.
nagariensis]
Length = 257
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 74/171 (43%), Positives = 103/171 (60%), Gaps = 15/171 (8%)
Query: 59 WLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLL 118
W PGV P YL G LAGD+G+DPLGLG DP +LRWY Q+ELVHAR+AM GVAG+L ++
Sbjct: 35 WAPGVVAPDYLKGELAGDYGWDPLGLGADPVALRWYRQSELVHARWAMLGVAGVLVQEV- 93
Query: 119 RVTGIRELPVWYEAGAVE-----FKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKE 173
++ +YEAG + F + L + +LM + E +R+ DY + GS ++
Sbjct: 94 ----VKPDVYFYEAGLPQNLPEPFTNVNMGGLLAWEFILMHWVEVRRWQDYKNFGSVNED 149
Query: 174 GSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
F G + E GYPGG + +PLG +K N +E + KEIKNG + +V
Sbjct: 150 PIFKG--NKVPNPEMGYPGG-IFDPLGFSKG--NLKELQTKEIKNGRLAMV 195
>gi|380447755|gb|AFD54060.1| morphogenesis protein [Leymus secalinus]
Length = 268
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 78/190 (41%), Positives = 108/190 (56%), Gaps = 18/190 (9%)
Query: 51 VRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESL------RWYVQAELVHARF 104
+ R W + YLDGTL GDFGFDPLGL DPE RW E+ + R
Sbjct: 42 AKQGDRQLWFAXXZXLTYLDGTLPGDFGFDPLGL-SDPEGTGGFIEPRWLAYGEIFNGRT 100
Query: 105 AMAGVAGILFTDLLRVTGI--RELPV-WYEAGAV----EFKF-ASTRTLFIVQLLLMGFA 156
AM GV G++ + L G+ E + W++AGA+ +++ A TLF+ ++ L+GFA
Sbjct: 101 AMMGVVGMIAPEALGKVGLVPSETAIPWFQAGAIPPAGTYQYWADPYTLFVFEMALIGFA 160
Query: 157 ETKRYMDYISPGSQTKEGSFFGLEAALEGL-EPGYPGGPLLNPLGLA-KDIRNAREWKLK 214
E +R D+ +PGS K+ F GLE L G +P YPGGP+ NPLG K + +E KLK
Sbjct: 161 EHRRLQDWYNPGSMGKQ-YFLGLEKYLGGSGDPAYPGGPIFNPLGFGTKSEKEMKELKLK 219
Query: 215 EIKNGLICLV 224
EIKNG + ++
Sbjct: 220 EIKNGRLAML 229
>gi|326514018|dbj|BAJ92159.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 269
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 78/190 (41%), Positives = 107/190 (56%), Gaps = 20/190 (10%)
Query: 52 RAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESL------RWYVQAELVHARFA 105
+ R W YLDGTL GDFGFDPLGL DPE RW E+ + R A
Sbjct: 44 QNDNRQLWFASKQSLTYLDGTLPGDFGFDPLGL-SDPEGTGGFIEPRWLAYGEIFNGRTA 102
Query: 106 MAGVAGILFTDLLRVTGI----RELPVWYEAGAV----EFKF-ASTRTLFIVQLLLMGFA 156
M GV G++ + L G+ +P W++AGA+ +++ A TLF+ ++ L+GFA
Sbjct: 103 MMGVVGMIAPEALGKVGLVPPETAIP-WFQAGAIPPAGTYQYWADPYTLFVFEMALIGFA 161
Query: 157 ETKRYMDYISPGSQTKEGSFFGLEAALEGL-EPGYPGGPLLNPLGLA-KDIRNAREWKLK 214
E +R D+ +PGS K+ F GLE L G +P YPGGP+ NPLG K + +E KLK
Sbjct: 162 EHRRLQDWYNPGSMGKQ-YFLGLEKYLGGSGDPAYPGGPIFNPLGFGTKSEKEMKELKLK 220
Query: 215 EIKNGLICLV 224
EIKNG + ++
Sbjct: 221 EIKNGRLAML 230
>gi|4741960|gb|AAD28777.1|AF134130_1 Lhcb6 protein [Arabidopsis thaliana]
Length = 258
Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 88/245 (35%), Positives = 123/245 (50%), Gaps = 29/245 (11%)
Query: 1 MAVAVGRGFLLQPSSSSSFICNDVNKSSIGITSAFLPAKSGTTRRYLATVVRAQQRPTWL 60
MA+AV L SSF+ ++ + A+ + + AQ + +W+
Sbjct: 1 MAMAVSGAVL--SGIGSSFLTGGKRGATALASGVGTGAQRVGRKTLIVAAAAAQPKKSWI 58
Query: 61 PGVD------PPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILF 114
P V P +LDG+L GDFGFDPLGLG+DP L+WY +AEL+H R+AMA V GI
Sbjct: 59 PAVKGGGNFLDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFV 118
Query: 115 TDLLRVTGIRELPVWYEAGAVEFKFA--STRTLFIVQLLLMGFAETKRYMDYISPGSQTK 172
+G+ W+EAGA A S +L QLLLMG+ E+KR++D+ +P SQ+
Sbjct: 119 GQAW--SGV----AWFEAGAQPDAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPDSQSV 172
Query: 173 E----GSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNA---------REWKLKEIKNG 219
E S A + GYPGG +PLGLA R+ KL EIK+
Sbjct: 173 EWATPWSKTAENFANYTGDQGYPGGRFFDPLGLAGKNRDGVYEPDFEKLERLKLAEIKHS 232
Query: 220 LICLV 224
+ +V
Sbjct: 233 RLAMV 237
>gi|398313943|emb|CCI55398.1| PSI antenna protein Lhca3 [Marchantia polymorpha]
Length = 279
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 70/174 (40%), Positives = 106/174 (60%), Gaps = 21/174 (12%)
Query: 68 YLDGTLAGDFGFDPLGLGE--------DPESLRWYVQAELVHARFAMAGVAGILFTDLLR 119
YLDG+L GD+GFDPLGL + DP LR+ AE+++ RFAM G AG + ++
Sbjct: 71 YLDGSLPGDYGFDPLGLSDPQGAGGFIDPNWLRY---AEIINGRFAMLGAAGAIAPEIFG 127
Query: 120 VTGI--RELPV-WYEAGAV----EFKF-ASTRTLFIVQLLLMGFAETKRYMDYISPGSQT 171
G+ +E + W++ G + ++ + A TLF++++ LMGFAE +R DY PGS
Sbjct: 128 KIGLIPQETAIPWFQTGVIPPLGQYSYWADPYTLFVLEMALMGFAEHRRAQDYYKPGSMG 187
Query: 172 KEGSFFGLEAALEGL-EPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
K+ F G E L G +P YPGGPL N LG +D ++ ++ K+KE+KNG + ++
Sbjct: 188 KQ-YFLGFEKVLGGSGDPAYPGGPLFNFLGFGRDEKSMKDLKVKEVKNGRLAML 240
>gi|168065932|ref|XP_001784899.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162663529|gb|EDQ50288.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 224
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 73/172 (42%), Positives = 105/172 (61%), Gaps = 17/172 (9%)
Query: 68 YLDGTLAGDFGFDPLGLGEDPESL------RWYVQAELVHARFAMAGVAGILFTDLLRVT 121
YLDGTL GD+GFDPLGL DPE +W AE+++ RFAM G AG + ++L
Sbjct: 16 YLDGTLPGDYGFDPLGL-MDPEGAGGFIDPQWLPYAEIINGRFAMLGAAGAIAPEVLGRI 74
Query: 122 GI--RELPV-WYEAGAV----EFKF-ASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKE 173
G+ +E + W+++G + + + A TLF++++ LMGFAE +R DY PGS K+
Sbjct: 75 GLIPQETAIPWFQSGVIPPVGNYSYWADPYTLFVLEMALMGFAEHRRAQDYYKPGSMGKQ 134
Query: 174 GSFFGLEAALEGL-EPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
F GLE L G P YPGGP+ N LG K+ + +E K+KE+KNG + ++
Sbjct: 135 -YFLGLEKFLGGSGNPAYPGGPIFNFLGFGKNEKELQELKVKEVKNGRLAMM 185
>gi|79320443|ref|NP_001031217.1| light-harvesting complex I chlorophyll a/b binding protein 3
[Arabidopsis thaliana]
gi|332195726|gb|AEE33847.1| light-harvesting complex I chlorophyll a/b binding protein 3
[Arabidopsis thaliana]
Length = 218
Score = 120 bits (302), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 71/169 (42%), Positives = 99/169 (58%), Gaps = 19/169 (11%)
Query: 72 TLAGDFGFDPLGLGEDPESL------RWYVQAELVHARFAMAGVAGILFTDLLRVTGI-- 123
+L GD+GFDPLGL DPE RW E+++ RFAM G AG + ++L G+
Sbjct: 14 SLPGDYGFDPLGL-SDPEGTGGFIEPRWLAYGEIINGRFAMLGAAGAIAPEILGKAGLIP 72
Query: 124 --RELPVWYEAGAVE-----FKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSF 176
LP W++ G + +A TLF++++ LMGFAE +R D+ +PGS K+ F
Sbjct: 73 AETALP-WFQTGVIPPAGTYTYWADNYTLFVLEMALMGFAEHRRLQDWYNPGSMGKQ-YF 130
Query: 177 FGLEAALEGL-EPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
GLE L G P YPGGP NPLG KD ++ +E KLKE+KNG + ++
Sbjct: 131 LGLEKGLAGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAML 179
>gi|15218330|ref|NP_173034.1| light harvesting complex photosystem II subunit 6 [Arabidopsis
thaliana]
gi|8927661|gb|AAF82152.1|AC034256_16 Identical to Lhcb6 protein from Arabidopsis thaliana gb|AF134130
and is a member of the Chlorophyll A-B binding proteins
PF|00504. ESTs gb|AI100562, gb|AI999227, gb|AA067457,
gb|BE037598, gb|BE039058, gb|BE038945, gb|BE038657,
gb|BE038604, gb|H76294, gb|H77256, gb|N65776, gb|N38000,
gb|R90377, gb|R90578, gb|R90082, gb|T44923, gb|T76598,
gb|T04144, gb|T43786, gb|T76834, gb|T04153, gb|T45475,
gb|T76179, gb|T46781, gb|T45938, gb|T45430, gb|W43165,
gb|Z18774 come from this gene [Arabidopsis thaliana]
gi|12083258|gb|AAG48788.1|AF332425_1 putative chlorophyll binding protein [Arabidopsis thaliana]
gi|17473665|gb|AAL38289.1| Lhcb6 protein [Arabidopsis thaliana]
gi|20148631|gb|AAM10206.1| chlorophyll A-B binding protein [Arabidopsis thaliana]
gi|332191248|gb|AEE29369.1| light harvesting complex photosystem II subunit 6 [Arabidopsis
thaliana]
Length = 258
Score = 120 bits (302), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 83/229 (36%), Positives = 117/229 (51%), Gaps = 27/229 (11%)
Query: 17 SSFICNDVNKSSIGITSAFLPAKSGTTRRYLATVVRAQQRPTWLPGVD------PPPYLD 70
SSF+ ++ + A+ + + AQ + +W+P V P +LD
Sbjct: 15 SSFLTGGKRGATALASGVGTGAQRVGRKTLIVAAAAAQPKKSWIPAVKGGGNFLDPEWLD 74
Query: 71 GTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWY 130
G+L GDFGFDPLGLG+DP L+WY +AEL+H R+AMA V GI +G+ W+
Sbjct: 75 GSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAW--SGV----AWF 128
Query: 131 EAGAVEFKFA--STRTLFIVQLLLMGFAETKRYMDYISPGSQTKE----GSFFGLEAALE 184
EAGA A S +L QLLLMG+ E+KR++D+ +P SQ+ E S A
Sbjct: 129 EAGAQPDAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPDSQSVEWATPWSKTAENFANY 188
Query: 185 GLEPGYPGGPLLNPLGLAKDIRNA---------REWKLKEIKNGLICLV 224
+ GYPGG +PLGLA R+ KL EIK+ + +V
Sbjct: 189 TGDQGYPGGRFFDPLGLAGKNRDGVYEPDFEKLERLKLAEIKHSRLAMV 237
>gi|307104824|gb|EFN53076.1| hypothetical protein CHLNCDRAFT_36644 [Chlorella variabilis]
Length = 275
Score = 120 bits (302), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 73/176 (41%), Positives = 96/176 (54%), Gaps = 19/176 (10%)
Query: 68 YLDGTLAGDFGFDPLGLGEDPESL------RWYVQAELVHARFAMAGVAGILFTDLLRVT 121
YLDGTL GDFGFDPLGL DPE W +E++H R+AM G+AG L ++L
Sbjct: 63 YLDGTLPGDFGFDPLGLC-DPEGAGGFITPEWLAYSEVIHCRWAMLGIAGFLAPEVLATI 121
Query: 122 GI----RELPVWYEAGAVE------FKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQT 171
G E VW+ +G + + TLF V+ ++M FAE KR+ DY SPGSQ
Sbjct: 122 GAIPASPEEAVWFRSGVIPPAGQYGAYWTDAYTLFWVEAIMMNFAELKRWQDYQSPGSQG 181
Query: 172 KEGSFFGLEAALEGL-EPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICLVLC 226
K+ F GLEA G P YPGG N L L K ++ + EI+NG + ++ C
Sbjct: 182 KQ-YFLGLEAVFGGSGNPAYPGGQFFNMLNLGKTPEAMKKLQTNEIRNGRLAMIAC 236
>gi|168049224|ref|XP_001777064.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162671629|gb|EDQ58178.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 224
Score = 120 bits (302), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 73/172 (42%), Positives = 105/172 (61%), Gaps = 17/172 (9%)
Query: 68 YLDGTLAGDFGFDPLGLGEDPESL------RWYVQAELVHARFAMAGVAGILFTDLLRVT 121
YLDGTL GD+GFDPLGL DPE +W AE+++ RFAM G AG + ++L
Sbjct: 16 YLDGTLPGDYGFDPLGL-MDPEGAGGFIDPQWLPYAEIINGRFAMLGAAGAIAPEVLGRI 74
Query: 122 GI--RELPV-WYEAGAV----EFKF-ASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKE 173
G+ +E + W+++G + + + A TLF++++ LMGFAE +R DY PGS K+
Sbjct: 75 GLIPQETAIPWFQSGVIPPVGNYSYWADPYTLFVLEMALMGFAEHRRAQDYYKPGSMGKQ 134
Query: 174 GSFFGLEAALEGL-EPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
F GLE L G P YPGGP+ N LG K+ + +E K+KE+KNG + ++
Sbjct: 135 -YFLGLEKFLGGSGNPAYPGGPIFNFLGFGKNEKELQELKVKEVKNGRLAMM 185
>gi|168049170|ref|XP_001777037.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162671602|gb|EDQ58151.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 242
Score = 120 bits (302), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 73/172 (42%), Positives = 105/172 (61%), Gaps = 17/172 (9%)
Query: 68 YLDGTLAGDFGFDPLGLGEDPESL------RWYVQAELVHARFAMAGVAGILFTDLLRVT 121
YLDGTL GD+GFDPLGL DPE +W AE+++ RFAM G AG + ++L
Sbjct: 34 YLDGTLPGDYGFDPLGL-MDPEGAGGFIDPQWLPYAEIINGRFAMLGAAGAIAPEVLGRI 92
Query: 122 GI--RELPV-WYEAGAV----EFKF-ASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKE 173
G+ +E + W+++G + + + A TLF++++ LMGFAE +R DY PGS K+
Sbjct: 93 GLIPQETAIPWFQSGVIPPVGNYSYWADPYTLFVLEMALMGFAEHRRAQDYYKPGSMGKQ 152
Query: 174 GSFFGLEAALEGL-EPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
F GLE L G P YPGGP+ N LG K+ + +E K+KE+KNG + ++
Sbjct: 153 -YFLGLEKFLGGSGNPAYPGGPIFNFLGFGKNEKELQELKVKEVKNGRLAMM 203
>gi|115834|sp|P27525.1|CB4B_SOLLC RecName: Full=Chlorophyll a-b binding protein CP24 10B,
chloroplastic; Short=CAB-10B; Short=LHCP; Flags:
Precursor
gi|170400|gb|AAA34146.1| chlorophyll b-binding protein [Solanum lycopersicum]
Length = 256
Score = 120 bits (302), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 87/237 (36%), Positives = 119/237 (50%), Gaps = 43/237 (18%)
Query: 16 SSSFICNDVNKSSIGITSAFLPAKSGTTRRYLATVVRAQQRPTWLPGVDP------PPYL 69
SSSF+ K + + A + A+ T +R++ + +W+P V P +L
Sbjct: 14 SSSFLTG--GKKTQALLGAHVTARVTTPKRFVVAAAAVAPKKSWIPAVKSGGNLVDPEWL 71
Query: 70 DGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVW 129
DG+L GDFGFDPLGLG+DP L+WY +AEL+H R+AMA V GI +GI W
Sbjct: 72 DGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAW--SGIP----W 125
Query: 130 YEAGA-----VEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQ--------TKEGSF 176
+EAGA F F S L QLLLMG+ E+KR++D+ SQ +K
Sbjct: 126 FEAGADPGAIAPFSFGS---LLGTQLLLMGWVESKRWVDFFDNDSQSIDWATPWSKTAEN 182
Query: 177 FGLEAALEGLEPGYPGGPLLNPLGLAKDIRNA---------REWKLKEIKNGLICLV 224
F A G E GYPGG +PL LA + N KL EIK+ + ++
Sbjct: 183 F---ANFTG-EQGYPGGKFFDPLALAGTLNNGVYVPDTEKLERLKLAEIKHSRLAML 235
>gi|413919930|gb|AFW59862.1| chlorophyll a/b-binding apoprotein CP24 Precursor [Zea mays]
Length = 248
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 78/190 (41%), Positives = 104/190 (54%), Gaps = 27/190 (14%)
Query: 56 RPTWLPGVDP------PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGV 109
+ +W+P + PP+LDG+L GDFGFDPLGLG+DP L+WY +AEL+H R+AMA V
Sbjct: 44 KKSWIPAIKSDAEIVNPPWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAV 103
Query: 110 AGILFTDLLRVTGIRELPVWYEAGAVEFKFA--STRTLFIVQLLLMGFAETKRYMDYISP 167
GI +GI W+EAGA A S +L QLLLMG+ E+KR++D+ +P
Sbjct: 104 LGIFVGQAW--SGIP----WFEAGADPSAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNP 157
Query: 168 GSQTKEGSFFGLEAALEGL----EPGYPGGPLLNPLGLA---------KDIRNAREWKLK 214
SQ E + A E GYPGG +PLGLA D+ KL
Sbjct: 158 DSQAVEWATPWSRTAENFANFTGEQGYPGGKFFDPLGLAGTVKDGVYIPDVDKLERLKLA 217
Query: 215 EIKNGLICLV 224
EIK+ I ++
Sbjct: 218 EIKHARIAML 227
>gi|242074752|ref|XP_002447312.1| hypothetical protein SORBIDRAFT_06g032690 [Sorghum bicolor]
gi|241938495|gb|EES11640.1| hypothetical protein SORBIDRAFT_06g032690 [Sorghum bicolor]
Length = 255
Score = 120 bits (301), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 81/203 (39%), Positives = 107/203 (52%), Gaps = 35/203 (17%)
Query: 47 LATVVRAQQRPTWLPGVDP------PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELV 100
L V + +W+P PP+LDG+L GDFGFDPLGLG+DP L+WY +AEL+
Sbjct: 42 LVVVAAVAPKKSWIPAFKSDAEFINPPWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELI 101
Query: 101 HARFAMAGVAGILFTDLLRVTGIRELPVWYEAGA-----VEFKFASTRTLFIVQLLLMGF 155
H R+AMA V GI +GI W+EAGA F F S L QLLLMG+
Sbjct: 102 HGRWAMAAVLGIFVGQAW--SGIP----WFEAGADPGAIAPFSFGS---LLGTQLLLMGW 152
Query: 156 AETKRYMDYISPGSQTKEGSFFGLEAALEGL-----EPGYPGGPLLNPLGLA-------- 202
E+KR++D+ +P SQ+ E + A E E GYPGG +PLGLA
Sbjct: 153 VESKRWVDFFNPDSQSVEWATPWSRTA-ENFANFTGEQGYPGGKFFDPLGLAGTVKDGVY 211
Query: 203 -KDIRNAREWKLKEIKNGLICLV 224
D+ KL EIK+ + ++
Sbjct: 212 IPDVDKLERLKLAEIKHARLAML 234
>gi|116309995|emb|CAH67022.1| H0523F07.10 [Oryza sativa Indica Group]
Length = 252
Score = 120 bits (300), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 80/199 (40%), Positives = 111/199 (55%), Gaps = 31/199 (15%)
Query: 48 ATVVRAQQRPTWLPGVDP------PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVH 101
A VV A++ +W+P PP+LDG+L GDFGFDPLGLG+DP L+WY +AEL+H
Sbjct: 42 ALVVSAKK--SWIPAFKSDAEFINPPWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIH 99
Query: 102 ARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFA--STRTLFIVQLLLMGFAETK 159
R+AMA V GI +G+ W+EAGA A S+ +L QLLLMG+ E+K
Sbjct: 100 GRWAMAAVLGIFVGQAW--SGVP----WFEAGAQPEAIAPFSSGSLLGTQLLLMGWVESK 153
Query: 160 RYMDYISPGSQTKEGSFFGLEAALEGL-----EPGYPGGPLLNPLGLAKDIRNA------ 208
R++D+ +P SQ+ E + A E E GYPGG +PLGL + R+
Sbjct: 154 RWVDFFNPDSQSVEWATPWSRTA-ENFSNATGEQGYPGGKFFDPLGLGGETRDGVYIPDT 212
Query: 209 ---REWKLKEIKNGLICLV 224
KL EIK+ + ++
Sbjct: 213 DKLDRLKLAEIKHARLAML 231
>gi|312281533|dbj|BAJ33632.1| unnamed protein product [Thellungiella halophila]
Length = 258
Score = 120 bits (300), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 80/205 (39%), Positives = 108/205 (52%), Gaps = 33/205 (16%)
Query: 44 RRYLATVVRAQQRPTWLPGVD------PPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQA 97
+ + AQ + +W+P V P +LDG+L GDFGFDPLGLG+DP L+WY +A
Sbjct: 42 KTLIVAAAAAQPKKSWIPAVKGGGNLLDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREA 101
Query: 98 ELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGA-----VEFKFASTRTLFIVQLLL 152
EL+H R+AMA V GI +G+ W+EAGA F F S L QLLL
Sbjct: 102 ELIHGRWAMAAVLGIFVGQAW--SGV----PWFEAGADPRAIAPFSFGS---LLGTQLLL 152
Query: 153 MGFAETKRYMDYISPGSQTKE----GSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNA 208
MG+ E+KR++D+ +P SQ+ E S A + GYPGG +PLGLA R+
Sbjct: 153 MGWVESKRWVDFFNPDSQSVEWATPWSRTAENFANYTGDQGYPGGRFFDPLGLAGKTRDG 212
Query: 209 ---------REWKLKEIKNGLICLV 224
KL EIK+ + +V
Sbjct: 213 VYEPDREKLERLKLAEIKHSRLAMV 237
>gi|326510901|dbj|BAJ91798.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 269
Score = 120 bits (300), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 77/190 (40%), Positives = 107/190 (56%), Gaps = 20/190 (10%)
Query: 52 RAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESL------RWYVQAELVHARFA 105
+ R W YLDGTL GDFGF+PLGL DPE RW E+ + R A
Sbjct: 44 QNDNRQLWFASKQSLTYLDGTLPGDFGFNPLGL-SDPEGTGGFIEPRWLAYGEIFNGRTA 102
Query: 106 MAGVAGILFTDLLRVTGI----RELPVWYEAGAV----EFKF-ASTRTLFIVQLLLMGFA 156
M GV G++ + L G+ +P W++AGA+ +++ A TLF+ ++ L+GFA
Sbjct: 103 MMGVVGMIAPEALGKVGLVPPETAIP-WFQAGAIPPAGTYQYWADPYTLFVFEMALIGFA 161
Query: 157 ETKRYMDYISPGSQTKEGSFFGLEAALEGL-EPGYPGGPLLNPLGLA-KDIRNAREWKLK 214
E +R D+ +PGS K+ F GLE L G +P YPGGP+ NPLG K + +E KLK
Sbjct: 162 EHRRLQDWYNPGSMGKQ-YFLGLEKYLGGSGDPAYPGGPIFNPLGFGTKSEKEMKELKLK 220
Query: 215 EIKNGLICLV 224
EIKNG + ++
Sbjct: 221 EIKNGRLAML 230
>gi|297850008|ref|XP_002892885.1| Lhcb6 protein [Arabidopsis lyrata subsp. lyrata]
gi|297338727|gb|EFH69144.1| Lhcb6 protein [Arabidopsis lyrata subsp. lyrata]
Length = 256
Score = 120 bits (300), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 85/230 (36%), Positives = 119/230 (51%), Gaps = 29/230 (12%)
Query: 17 SSFICNDVNKSSIGITSAFLPAKSGTTRRYLATVVRAQQ-RPTWLPGVD------PPPYL 69
SSF+ +SS + + R+ L V A Q + +W+P V P +L
Sbjct: 13 SSFLTGG-KRSSTALGNGVGTGAQRVGRKTLIVVAAAAQPKKSWIPAVKGGGNFLDPEWL 71
Query: 70 DGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVW 129
DG+L GD+GFDPLGLG+DP L+WY +AEL+H R+AMA V GI +G+ W
Sbjct: 72 DGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAW--SGVP----W 125
Query: 130 YEAGAVEFKFA--STRTLFIVQLLLMGFAETKRYMDYISPGSQTKE----GSFFGLEAAL 183
+EAGA A S +L QLLLMG+ E+KR++D+ +P SQ+ E S A
Sbjct: 126 FEAGAQPEAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPDSQSVEWATPWSRTAENFAN 185
Query: 184 EGLEPGYPGGPLLNPLGLAK---------DIRNAREWKLKEIKNGLICLV 224
+ GYPGG +PLGLA D+ KL EIK+ + ++
Sbjct: 186 YTGDQGYPGGRFFDPLGLAGKNRDGVYEPDVEKLERLKLAEIKHSRLAML 235
>gi|168009690|ref|XP_001757538.1| predicted protein [Physcomitrella patens subsp. patens]
gi|168009894|ref|XP_001757640.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162691232|gb|EDQ77595.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162691334|gb|EDQ77697.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 219
Score = 119 bits (299), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 77/194 (39%), Positives = 109/194 (56%), Gaps = 29/194 (14%)
Query: 53 AQQRPTWLPGVD------PPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAM 106
A + +W+P V P +LDG+L GD+GFDPLGLG DP +L+WY +AEL+H R+AM
Sbjct: 12 AGGKKSWIPAVKGGGNLTDPEWLDGSLPGDYGFDPLGLGRDPAALKWYREAELIHGRWAM 71
Query: 107 AGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFA--STRTLFIVQLLLMGFAETKRYMDY 164
A V GI G +P W+EAGA A S +L QLLLMG+ ETKR++D+
Sbjct: 72 AAVVGIFVGQ-----GWSGVP-WFEAGADPAALAPFSFGSLLGTQLLLMGWVETKRWIDF 125
Query: 165 ISPGSQTKEGSFFGLEAALE-----GLEPGYPGGPLLNPLGLAKDIRNAR---------E 210
++PG+Q+ E + A GL+ GYPGG +PL LA ++ +
Sbjct: 126 LNPGTQSVEWATPWSRTAENFNNSTGLQ-GYPGGKFFDPLALAGSVQGGQYVPDFSKLER 184
Query: 211 WKLKEIKNGLICLV 224
+L EIK+ + +V
Sbjct: 185 LQLAEIKHARLAMV 198
>gi|115833|sp|P27524.1|CB4A_SOLLC RecName: Full=Chlorophyll a-b binding protein CP24 10A,
chloroplastic; Short=CAB-10A; Short=LHCP; Flags:
Precursor
gi|170394|gb|AAA34143.1| a-binding protein [Solanum lycopersicum]
Length = 256
Score = 119 bits (299), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 85/230 (36%), Positives = 118/230 (51%), Gaps = 28/230 (12%)
Query: 16 SSSFICNDVNKSSIGITSAFLPAKSGTTRRYLATVVRAQQRPTWLPGVD------PPPYL 69
SSSF+ NKS + + G TV+ A + +W+P V P +L
Sbjct: 13 SSSFLTGG-NKSQALLAAPLAARVGGAATPKRFTVLAAAAKKSWIPAVRGGGNLVDPEWL 71
Query: 70 DGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVW 129
DG+L GD+GFDPLGLG+DP L+WY +AEL+H R+AMA V GI +GI W
Sbjct: 72 DGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAW--SGIP----W 125
Query: 130 YEAGAVEFKFA--STRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGL- 186
+EAGA A S TL QL+LMG+ E+KR++D+ P SQ+ E + + A
Sbjct: 126 FEAGADPGAIAPFSFGTLLGTQLILMGWVESKRWVDFFDPDSQSVEWATPWSKTAENFAN 185
Query: 187 ---EPGYPGGPLLNPLGLAKDIRNA---------REWKLKEIKNGLICLV 224
E GYPGG +PL LA + N K+ EIK+ + ++
Sbjct: 186 FTGEQGYPGGKFFDPLALAGTLNNGVYVPDTEKLERLKVAEIKHARLAML 235
>gi|159468772|ref|XP_001692548.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
gi|158278261|gb|EDP04026.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
Length = 213
Score = 119 bits (299), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 70/175 (40%), Positives = 95/175 (54%), Gaps = 29/175 (16%)
Query: 50 VVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGV 109
V A RPTWLPG++PP +L G LAGD GFDPLGLG+D L+WY +AE + R+AM V
Sbjct: 22 VAAASARPTWLPGLNPPAHLKGALAGDNGFDPLGLGQDEGRLKWYAEAEKTNGRWAMMAV 81
Query: 110 AGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGS 169
AGIL +LL VT P W+EAGA E+ + + L ++ ++MGF E KRY + G+
Sbjct: 82 AGILGQELLGVT-----PAWWEAGAKEYDIPA-QALTPIEFIVMGFLEIKRYQGFKQTGT 135
Query: 170 QTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
SF +P G+ N+ KE+KNG + +V
Sbjct: 136 SGFINSF------------------PFDPAGM-----NSPSMATKEVKNGRLAMV 167
>gi|159489490|ref|XP_001702730.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
gi|40714513|dbj|BAD06920.1| light-harvesting chlorophyll-a/b protein of photosystem I
[Chlamydomonas reinhardtii]
gi|158280752|gb|EDP06509.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
Length = 257
Score = 119 bits (298), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 77/193 (39%), Positives = 109/193 (56%), Gaps = 15/193 (7%)
Query: 37 PAKSGTTRRYLATVVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQ 96
PA S + R V A R W PGV P YL G LAGD+G+DPLGLG DP +L+WY Q
Sbjct: 13 PACSTRSSRRAVVVRAAADRKLWAPGVVAPEYLKGDLAGDYGWDPLGLGADPTALKWYRQ 72
Query: 97 AELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVE-----FKFASTRTLFIVQLL 151
+EL HAR+AM GVAG+L ++ ++ +YEAG + F + L + +
Sbjct: 73 SELQHARWAMLGVAGVLVQEI-----VKPDVYFYEAGLPQNLPEPFTNINMGGLLAWEFI 127
Query: 152 LMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREW 211
LM + E +R+ DY + GS ++ F G + E GYPGG + +P G +K N +E
Sbjct: 128 LMHWVEVRRWQDYKNFGSVNEDPIFKG--NKVPNPEMGYPGG-IFDPFGFSKG--NLKEL 182
Query: 212 KLKEIKNGLICLV 224
+ KEIKNG + ++
Sbjct: 183 QTKEIKNGRLAMI 195
>gi|19421770|gb|AAL87738.1|AF244524_1 chlorophyll a/b-binding protein [Chlamydomonas reinhardtii]
Length = 222
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 70/175 (40%), Positives = 95/175 (54%), Gaps = 29/175 (16%)
Query: 50 VVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGV 109
V A RPTWLPG++PP +L G LAGD GFDPLGLG+D L+WY +AE + R+AM V
Sbjct: 22 VAAASARPTWLPGLNPPAHLKGALAGDNGFDPLGLGQDEGRLKWYAEAEKTNGRWAMMAV 81
Query: 110 AGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGS 169
AGIL +LL VT P W+EAGA E+ + + L ++ ++MGF E KRY + G+
Sbjct: 82 AGILGQELLGVT-----PAWWEAGAKEYDIPA-QALTPIEFIVMGFLEIKRYQGFKQTGT 135
Query: 170 QTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
SF +P G+ N+ KE+KNG + +V
Sbjct: 136 SGFINSF------------------PFDPAGM-----NSPSMATKEVKNGRLAMV 167
>gi|162461245|ref|NP_001105375.1| light harvesting chlorophyll a/b binding protein6 precursor [Zea
mays]
gi|733458|gb|AAA64416.1| chlorophyll a/b-binding apoprotein CP24 precursor [Zea mays]
Length = 247
Score = 119 bits (297), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 79/202 (39%), Positives = 108/202 (53%), Gaps = 27/202 (13%)
Query: 44 RRYLATVVRAQQRPTWLPGVDP------PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQA 97
RR L A + +W+P + PP+LDG+L GDFGFDPLGLG+DP L+WY +A
Sbjct: 31 RRALVVAAAAAAKKSWIPAIKSDAEIVNPPWLDGSLPGDFGFDPLGLGKDPAFLKWYREA 90
Query: 98 ELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFA--STRTLFIVQLLLMGF 155
+++H R+AMA V GI +GI W+EAGA + A S +L QLLLMG+
Sbjct: 91 DVIHGRWAMAAVLGIFVGQAW--SGI----PWFEAGADPTRIAPFSFGSLLGTQLLLMGW 144
Query: 156 AETKRYMDYISPGSQTKEGSFFGLEAALEGL----EPGYPGGPLLNPLGLA--------- 202
E+KR++D+ +P SQ E + A E GYPGG +PL LA
Sbjct: 145 VESKRWVDFFNPDSQAVEWATPWSRTAENFANFTGEQGYPGGKFFDPLALAGTSRDGVYI 204
Query: 203 KDIRNAREWKLKEIKNGLICLV 224
D+ KL EIK+ I ++
Sbjct: 205 PDVDKLERLKLAEIKHARIAML 226
>gi|356512075|ref|XP_003524746.1| PREDICTED: LOW QUALITY PROTEIN: chlorophyll a-b binding protein
CP24 10A, chloroplastic-like [Glycine max]
Length = 258
Score = 118 bits (296), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 86/235 (36%), Positives = 118/235 (50%), Gaps = 39/235 (16%)
Query: 17 SSFICNDVNKSSIGITSAFLPAKSGTTRRYLATVVRAQQRP--TWLPGVD------PPPY 68
S F+C K S + +A + K G +V P +W+P V P +
Sbjct: 15 SHFLCG--GKRSHALLAAGIGGKVGAVVSPXRVIVAVAAAPKKSWIPAVKGGGNFIDPEW 72
Query: 69 LDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPV 128
LDG+L GD+GFDPLGLG+DP L+WY +AEL+H R+AMA V GI +G+
Sbjct: 73 LDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFIGQAW--SGVP---- 126
Query: 129 WYEAGAVEFKFA--STRTLFIVQLLLMGFAETKRYMDYISPGSQTKE--------GSFFG 178
W+EAGA A S +L QLLLMG+ E+KR++D+ +P SQ+ E FG
Sbjct: 127 WFEAGADPNAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPDSQSVEWATPWSRTAENFG 186
Query: 179 LEAALEGLEPGYPGGPLLNPLGLAKDIRNA---------REWKLKEIKNGLICLV 224
E GYPGG +PLG A I++ KL EIK+ I ++
Sbjct: 187 NSTG----EQGYPGGKFFDPLGFAGTIKDGVYIPDTDKLERLKLTEIKHARIAML 237
>gi|50313237|gb|AAT74560.1| Lhcb6 protein [Brassica rapa subsp. pekinensis]
Length = 254
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 79/205 (38%), Positives = 108/205 (52%), Gaps = 33/205 (16%)
Query: 44 RRYLATVVRAQQRPTWLPGVD------PPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQA 97
+ + AQ + +W+P V P +LDG+L GDFGFDPLGLG+DP L+WY +A
Sbjct: 38 KTLIVAAAAAQPKKSWIPAVKGGGNFLDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREA 97
Query: 98 ELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGA-----VEFKFASTRTLFIVQLLL 152
EL+H R+AMA V GI +G+ W+EAGA F F S L QLLL
Sbjct: 98 ELIHGRWAMAAVLGIFVGQAW--SGV----PWFEAGADPRAIAPFSFGS---LLGTQLLL 148
Query: 153 MGFAETKRYMDYISPGSQTKE----GSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNA 208
MG+ E+KR++D+ +P SQ+ E S A + GYPGG +PLGLA R+
Sbjct: 149 MGWVESKRWVDFFNPDSQSVEWATPWSRTAENFANYTGDQGYPGGRFFDPLGLAGKTRDG 208
Query: 209 ---------REWKLKEIKNGLICLV 224
KL EIK+ + ++
Sbjct: 209 VYEPDREKLERLKLAEIKHSRLAML 233
>gi|226501904|ref|NP_001141632.1| uncharacterized protein LOC100273752 [Zea mays]
gi|226531392|ref|NP_001148406.1| chlorophyll a-b binding protein CP24 [Zea mays]
gi|194705338|gb|ACF86753.1| unknown [Zea mays]
gi|195619056|gb|ACG31358.1| chlorophyll a-b binding protein CP24 [Zea mays]
gi|414584819|tpg|DAA35390.1| TPA: chlorophyll a-b binding protein CP24 isoform 1 [Zea mays]
gi|414584820|tpg|DAA35391.1| TPA: chlorophyll a-b binding protein CP24 isoform 2 [Zea mays]
Length = 253
Score = 118 bits (295), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 78/193 (40%), Positives = 104/193 (53%), Gaps = 33/193 (17%)
Query: 56 RPTWLPGVDP------PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGV 109
+ +W+P PP+LDG+L GDFGFDPLGLG+DP L+WY +AEL+H R+AMA V
Sbjct: 49 KKSWIPAFKSDAEFINPPWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAV 108
Query: 110 AGILFTDLLRVTGIRELPVWYEAGA-----VEFKFASTRTLFIVQLLLMGFAETKRYMDY 164
GI +GI W+EAGA F F S L QLLLMG+ E+KR++D+
Sbjct: 109 LGIFVGQAW--SGIP----WFEAGADPGAIAPFSFGS---LLGTQLLLMGWVESKRWVDF 159
Query: 165 ISPGSQTKEGSFFGLEAALEGL----EPGYPGGPLLNPLGLA---------KDIRNAREW 211
+P SQ+ E + A + GYPGG +PLGLA D+
Sbjct: 160 FNPDSQSVEWATPWSRTAENFANFTGDQGYPGGKFFDPLGLAGTVKDGVYVPDVEKLERL 219
Query: 212 KLKEIKNGLICLV 224
KL EIK+ I ++
Sbjct: 220 KLAEIKHARIAML 232
>gi|115458738|ref|NP_001052969.1| Os04g0457000 [Oryza sativa Japonica Group]
gi|21740892|emb|CAD40888.1| OSJNBa0036B21.6 [Oryza sativa Japonica Group]
gi|113564540|dbj|BAF14883.1| Os04g0457000 [Oryza sativa Japonica Group]
gi|125548549|gb|EAY94371.1| hypothetical protein OsI_16135 [Oryza sativa Indica Group]
gi|125548552|gb|EAY94374.1| hypothetical protein OsI_16138 [Oryza sativa Indica Group]
gi|215740813|dbj|BAG96969.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 252
Score = 118 bits (295), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 80/199 (40%), Positives = 109/199 (54%), Gaps = 31/199 (15%)
Query: 48 ATVVRAQQRPTWLPGVDP------PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVH 101
A VV A++ +W+P PP+LDG+L GDFGFDPLGLG+DP L+WY +AEL+H
Sbjct: 42 ALVVSAKK--SWIPAFKSDAEFINPPWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIH 99
Query: 102 ARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFA--STRTLFIVQLLLMGFAETK 159
R+AMA V GI +G+ W+EAGA A S +L QLLLMG+ E+K
Sbjct: 100 GRWAMAAVLGIFVGQAW--SGVP----WFEAGAQPEAIAPFSFGSLLGTQLLLMGWVESK 153
Query: 160 RYMDYISPGSQTKEGSFFGLEAALEGL-----EPGYPGGPLLNPLGLAKDIRNA------ 208
R++D+ +P SQ E + A E E GYPGG +PLGL + R+
Sbjct: 154 RWVDFFNPDSQAVEWATPWSRTA-ENFSNATGEQGYPGGKFFDPLGLGGETRDGVYIPDT 212
Query: 209 ---REWKLKEIKNGLICLV 224
KL EIK+ + ++
Sbjct: 213 DKLDRLKLAEIKHARLAML 231
>gi|7271947|gb|AAF44703.1|AF241525_1 chlorophyll a/b-binding protein type III [Alonsoa meridionalis]
Length = 193
Score = 117 bits (294), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 69/166 (41%), Positives = 97/166 (58%), Gaps = 19/166 (11%)
Query: 75 GDFGFDPLGLGEDPESL------RWYVQAELVHARFAMAGVAGILFTDLLRVTGI----R 124
GDFGFDPLGL DPE +W E+++ RFAM G G + ++L G+
Sbjct: 1 GDFGFDPLGL-SDPEGTGGFIEPKWLAYGEIINGRFAMLGAVGAIAPEILGKAGLIPAET 59
Query: 125 ELPVWYEAGAVE-----FKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGL 179
LP W++ G + +A TLF++++ LMGFAE +R+ D+ PGS K+ F GL
Sbjct: 60 ALP-WFQTGVIPPAGTYNYWADGYTLFVLEMALMGFAEHRRFQDWAKPGSMGKQ-YFLGL 117
Query: 180 EAALEGL-EPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
E L G +P YPGGP NPLG KD ++ +E KLKE+KNG + ++
Sbjct: 118 EKGLGGSGDPAYPGGPFFNPLGFGKDEKSMKELKLKEVKNGRLAML 163
>gi|302816085|ref|XP_002989722.1| light-harvesting complex [Selaginella moellendorffii]
gi|300142499|gb|EFJ09199.1| light-harvesting complex [Selaginella moellendorffii]
Length = 281
Score = 117 bits (293), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 73/185 (39%), Positives = 101/185 (54%), Gaps = 18/185 (9%)
Query: 55 QRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPE------SLRWYVQAELVHARFAMAG 108
R W YLDGTL GD+GFDPLGL DP + W AE+++ R+AM G
Sbjct: 58 NRQLWFASSQSLSYLDGTLPGDYGFDPLGL-SDPAGAGNFMTPNWLSYAEIINGRYAMLG 116
Query: 109 VAGILFTDLLRVTGI---RELPVWYEAG----AVEFKF-ASTRTLFIVQLLLMGFAETKR 160
AG + ++ GI + VW++ G A + + A TLF +++ LMGFAE +R
Sbjct: 117 AAGAIAPEIFGKIGIIPQQTAVVWFKTGVFPPAGTYNYWADPYTLFFLEMALMGFAEHRR 176
Query: 161 YMDYISPGSQTKEGSFFGLEAALEGL-EPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNG 219
DY PGS K+ F G E L G +P YPGG + NP G KD ++ R K+KE+KNG
Sbjct: 177 AQDYYKPGSMGKQ-YFLGFEKYLGGSGDPAYPGG-IFNPFGFGKDEKSMRTLKIKEVKNG 234
Query: 220 LICLV 224
+ ++
Sbjct: 235 RLAML 239
>gi|87313167|gb|ABD37880.1| light-harvesting chlorophyll-a/b binding protein Lhca3 [Mesostigma
viride]
Length = 300
Score = 117 bits (293), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 74/194 (38%), Positives = 113/194 (58%), Gaps = 23/194 (11%)
Query: 50 VVRAQQ--RPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESL------RWYVQAELVH 101
VV+A++ R + YLDG+ GDFG+DPLGL PE +W +E++H
Sbjct: 68 VVKAEKSDRQLFFSDKAAQSYLDGSKPGDFGYDPLGL-YKPEGAGGFIDPKWLAYSEVIH 126
Query: 102 ARFAMAGVAGILFTDLLRVTGIRELP-----VWYEAGAVEFK-----FASTRTLFIVQLL 151
R+AM G+AG++ ++L G+ +P VW++ G + + +AS LF ++++
Sbjct: 127 CRYAMLGMAGMVAPEILGKLGL--IPAETGLVWFKTGVIPSEGQYDYWASPLALFWIEVV 184
Query: 152 LMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGL-EPGYPGGPLLNPLGLAKDIRNARE 210
LM FAE +R+ DY PGSQ+K+ F GLE G +P YPGG + N LG KD ++ +
Sbjct: 185 LMQFAELRRWQDYRHPGSQSKQ-YFLGLEQFFGGSGDPSYPGGAIFNFLGYGKDEKSMND 243
Query: 211 WKLKEIKNGLICLV 224
KLKE+KNG + +V
Sbjct: 244 LKLKELKNGRLAMV 257
>gi|192764617|gb|ACF05852.1| chloroplast light-harvesting complex II protein [Populus tremula]
Length = 174
Score = 117 bits (293), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 74/173 (42%), Positives = 97/173 (56%), Gaps = 24/173 (13%)
Query: 45 RYLATVVRAQQRPTWLPGVD------PPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAE 98
R L V AQ + +W+P V P +LDG+L GD+GFDPLGLG+DP L+WY +AE
Sbjct: 8 RKLTIVATAQPKKSWIPAVKGGGSFVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAE 67
Query: 99 LVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGA-----VEFKFASTRTLFIVQLLLM 153
L+H R+AMA V GI +GI W+EAGA F F S L QL+LM
Sbjct: 68 LIHGRWAMAAVVGIFVGQAW--SGIP----WFEAGADPGAIAPFSFGS---LLGTQLILM 118
Query: 154 GFAETKRYMDYISPGSQTKE----GSFFGLEAALEGLEPGYPGGPLLNPLGLA 202
G+ E+KR++D+ +P SQ+ E S A + GYPGG +PLG A
Sbjct: 119 GWVESKRWVDFFNPESQSVEWATPWSKTAENFANATGDQGYPGGKFFDPLGFA 171
>gi|192764599|gb|ACF05843.1| chloroplast light-harvesting complex II protein [Populus tremula]
gi|192764603|gb|ACF05845.1| chloroplast light-harvesting complex II protein [Populus tremula]
Length = 174
Score = 117 bits (293), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 74/173 (42%), Positives = 97/173 (56%), Gaps = 24/173 (13%)
Query: 45 RYLATVVRAQQRPTWLPGVD------PPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAE 98
R L V AQ + +W+P V P +LDG+L GD+GFDPLGLG+DP L+WY +AE
Sbjct: 8 RKLTIVAAAQPKKSWIPAVKGGGSFVDPEWLDGSLPGDYGFDPLGLGKDPTFLKWYREAE 67
Query: 99 LVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGA-----VEFKFASTRTLFIVQLLLM 153
L+H R+AMA V GI +GI W+EAGA F F S L QL+LM
Sbjct: 68 LIHGRWAMAAVVGIFVGQAW--SGIP----WFEAGADPGAIAPFSFGS---LLGTQLILM 118
Query: 154 GFAETKRYMDYISPGSQTKE----GSFFGLEAALEGLEPGYPGGPLLNPLGLA 202
G+ E+KR++D+ +P SQ+ E S A + GYPGG +PLG A
Sbjct: 119 GWVESKRWVDFFNPESQSVEWATPWSKTAENFANATGDQGYPGGKFFDPLGFA 171
>gi|192764579|gb|ACF05833.1| chloroplast light-harvesting complex II protein [Populus tremula]
gi|192764581|gb|ACF05834.1| chloroplast light-harvesting complex II protein [Populus tremula]
gi|192764583|gb|ACF05835.1| chloroplast light-harvesting complex II protein [Populus tremula]
gi|192764585|gb|ACF05836.1| chloroplast light-harvesting complex II protein [Populus tremula]
gi|192764587|gb|ACF05837.1| chloroplast light-harvesting complex II protein [Populus tremula]
gi|192764589|gb|ACF05838.1| chloroplast light-harvesting complex II protein [Populus tremula]
gi|192764601|gb|ACF05844.1| chloroplast light-harvesting complex II protein [Populus tremula]
gi|192764605|gb|ACF05846.1| chloroplast light-harvesting complex II protein [Populus tremula]
gi|192764607|gb|ACF05847.1| chloroplast light-harvesting complex II protein [Populus tremula]
gi|192764609|gb|ACF05848.1| chloroplast light-harvesting complex II protein [Populus tremula]
gi|192764611|gb|ACF05849.1| chloroplast light-harvesting complex II protein [Populus tremula]
gi|192764613|gb|ACF05850.1| chloroplast light-harvesting complex II protein [Populus tremula]
gi|192764615|gb|ACF05851.1| chloroplast light-harvesting complex II protein [Populus tremula]
gi|192764619|gb|ACF05853.1| chloroplast light-harvesting complex II protein [Populus tremula]
gi|192764621|gb|ACF05854.1| chloroplast light-harvesting complex II protein [Populus tremula]
Length = 174
Score = 117 bits (292), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 74/173 (42%), Positives = 97/173 (56%), Gaps = 24/173 (13%)
Query: 45 RYLATVVRAQQRPTWLPGVD------PPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAE 98
R L V AQ + +W+P V P +LDG+L GD+GFDPLGLG+DP L+WY +AE
Sbjct: 8 RKLTIVAAAQPKKSWIPAVKGGGSFVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAE 67
Query: 99 LVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGA-----VEFKFASTRTLFIVQLLLM 153
L+H R+AMA V GI +GI W+EAGA F F S L QL+LM
Sbjct: 68 LIHGRWAMAAVVGIFVGQAW--SGIP----WFEAGADPGAIAPFSFGS---LLGTQLILM 118
Query: 154 GFAETKRYMDYISPGSQTKE----GSFFGLEAALEGLEPGYPGGPLLNPLGLA 202
G+ E+KR++D+ +P SQ+ E S A + GYPGG +PLG A
Sbjct: 119 GWVESKRWVDFFNPESQSVEWATPWSKTAENFANATGDQGYPGGKFFDPLGFA 171
>gi|192764597|gb|ACF05842.1| chloroplast light-harvesting complex II protein [Populus tremula]
Length = 174
Score = 117 bits (292), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 73/170 (42%), Positives = 97/170 (57%), Gaps = 18/170 (10%)
Query: 45 RYLATVVRAQQRPTWLPGVD------PPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAE 98
R L V AQ + +W+P V P +LDG+L GD+GFDPLGLG+DP L+WY +AE
Sbjct: 8 RKLTIVAAAQPKKSWIPAVKGGGSFVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAE 67
Query: 99 LVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFA--STRTLFIVQLLLMGFA 156
L+H R+AMA V GI +GI W+EAGA A S +L QL+LMG+
Sbjct: 68 LIHGRWAMAAVVGIFVGQAW--SGIP----WFEAGADPGAIAPFSFGSLLGTQLILMGWV 121
Query: 157 ETKRYMDYISPGSQTKE----GSFFGLEAALEGLEPGYPGGPLLNPLGLA 202
E+KR++D+ +P SQ+ E S A + GYPGG +PLG A
Sbjct: 122 ESKRWVDFFNPESQSVEWAPPWSKTAENFANATGDQGYPGGKFFDPLGFA 171
>gi|145079550|tpg|DAA05918.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca3 [Mesostigma viride]
Length = 278
Score = 117 bits (292), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 79/214 (36%), Positives = 120/214 (56%), Gaps = 28/214 (13%)
Query: 35 FLPAKSGTTRRYLAT-----VVRAQQ--RPTWLPGVDPPPYLDGTLAGDFGFDPLGLGED 87
FL A+ R A+ VV+A++ R + YLDG+ GDFG+DPLGL
Sbjct: 26 FLGARVAAAARPQASKAAKFVVKAEKSDRQLFFSDKAAQSYLDGSKPGDFGYDPLGL-YK 84
Query: 88 PESL------RWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELP-----VWYEAGAVE 136
PE +W +E++H R+AM G+AG++ ++L G+ +P VW++ G +
Sbjct: 85 PEGAGGFIDPKWLAYSEVIHCRYAMLGMAGMVAPEILGKLGL--IPAETGLVWFKTGVIP 142
Query: 137 FK-----FASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGL-EPGY 190
+ +AS LF ++++LM FAE +R+ DY PGSQ+K+ F GLE G +P Y
Sbjct: 143 SEGQYDYWASPLALFWIEVVLMQFAELRRWQDYRHPGSQSKQ-YFLGLEQFFGGSGDPSY 201
Query: 191 PGGPLLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
PGG + N LG KD ++ + KLKE+KNG + +V
Sbjct: 202 PGGAIFNFLGYGKDEKSMNDLKLKELKNGRLAMV 235
>gi|116785754|gb|ABK23846.1| unknown [Picea sitchensis]
Length = 161
Score = 117 bits (292), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 57/111 (51%), Positives = 69/111 (62%), Gaps = 2/111 (1%)
Query: 29 IGITSAFLPAKSGTTRRYLATVVRAQQ--RPTWLPGVDPPPYLDGTLAGDFGFDPLGLGE 86
+G + +K+ RR V A Q RP W PG PPP+LDG+L DFGFDPLGLG
Sbjct: 44 VGRAVSLRQSKAAMPRRAAVIVSEAVQTERPLWFPGTTPPPWLDGSLPADFGFDPLGLGS 103
Query: 87 DPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEF 137
DPE+L+W VQ+ELVH R+AM G AGI +LL GI P WY AG E+
Sbjct: 104 DPETLKWNVQSELVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGEQEY 154
>gi|110377772|gb|ABG73416.1| chloroplast pigment-binding protein CP24 [Nicotiana tabacum]
Length = 257
Score = 117 bits (292), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 87/236 (36%), Positives = 123/236 (52%), Gaps = 39/236 (16%)
Query: 16 SSSFICNDVNKSSIGITSAFLPAKSG---TTRRYLATVVRAQQRPTWLPGVD------PP 66
SSSF+ K+S + A + A+ G T +R + A ++ +W+P V P
Sbjct: 13 SSSFLTG--GKNSQALLGAPVAARIGGLATPKRCIVAAAAAPKK-SWIPAVKGGGNLLDP 69
Query: 67 PYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIREL 126
+LDG+L GD+GFDPLGLG+DP L+WY +AEL+H R+AMA V GI +GI
Sbjct: 70 EWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAW--SGIP-- 125
Query: 127 PVWYEAGA-----VEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEA 181
W+EAGA F F S L QLLLMG+ E+KR++D+ +P SQ+ E + +
Sbjct: 126 --WFEAGADPGAIAPFSFGS---LLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSKT 180
Query: 182 ALEGL----EPGYPGGPLLNPLGLA---------KDIRNAREWKLKEIKNGLICLV 224
A E GYPGG +PL LA D K+ EIK+ + ++
Sbjct: 181 AENFANFTGEQGYPGGKFFDPLSLAGTLQDGVYIPDTEKLERLKVAEIKHARLAML 236
>gi|87313217|gb|ABD37905.1| light-harvesting chlorophyll-a/b binding protein Lhca3
[Chlamydomonas incerta]
Length = 245
Score = 116 bits (291), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 76/193 (39%), Positives = 109/193 (56%), Gaps = 15/193 (7%)
Query: 37 PAKSGTTRRYLATVVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQ 96
PA S + R V A R W PGV P YL G LAGD+G+DPLGLG DP +L+WY Q
Sbjct: 1 PACSTRSSRRAVVVRAAADRKLWAPGVVAPEYLKGELAGDYGWDPLGLGADPTALKWYRQ 60
Query: 97 AELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVE-----FKFASTRTLFIVQLL 151
+EL HAR+AM GVAG+L ++ ++ +YEAG + F + L + +
Sbjct: 61 SELQHARWAMLGVAGVLVQEI-----VKPDVYFYEAGLPQNLPEPFTNINMGGLLAWEFI 115
Query: 152 LMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREW 211
LM + E +R+ DY + GS ++ F G + E GYPGG + +P G +K + +E
Sbjct: 116 LMHWVEVRRWQDYKNFGSVNEDPIFKG--NKVPNPEMGYPGG-IFDPFGFSKG--DFKEL 170
Query: 212 KLKEIKNGLICLV 224
+ KEIKNG + ++
Sbjct: 171 QTKEIKNGRLAMI 183
>gi|388506818|gb|AFK41475.1| unknown [Lotus japonicus]
Length = 260
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 83/246 (33%), Positives = 128/246 (52%), Gaps = 29/246 (11%)
Query: 1 MAVAVGRGFLLQPSSSSSFICN-DVNKSSIGITSAFLPAKSGTTRRYLATVVRAQQRPTW 59
MA A G +L SSF+C + +++ + + + + +R + A + +W
Sbjct: 1 MAAAATSGAVLN-GLGSSFLCGGNRSQTLLASAAGAKAGAAVSPKRLIVAAAAAAPKKSW 59
Query: 60 LPGVD------PPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGIL 113
+P V P +LDG+L GDFGFDPLGLG+DP L+WY +AEL+H R+AMA V GI
Sbjct: 60 IPAVKGGGNLVDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIF 119
Query: 114 FTDLLRVTGIRELPVWYEAGAVEFKFA--STRTLFIVQLLLMGFAETKRYMDYISPGSQT 171
+G+ W+EAGA A S +L QL+LMG+ E+KR++D+ +P SQ+
Sbjct: 120 VGQAW--SGVP----WFEAGADPNAIAPFSFGSLLGTQLILMGWVESKRWVDFFNPDSQS 173
Query: 172 KEGSFFGLEAALEGL----EPGYPGGPLLNPLGLAKDIRNA---------REWKLKEIKN 218
E + + A + GYPGG +PL LA +++ KL EIK+
Sbjct: 174 VEWATPWSKTAENFANYTGDQGYPGGKFFDPLALAGTLQDGVYIPDKEKLERLKLAEIKH 233
Query: 219 GLICLV 224
+ ++
Sbjct: 234 ARLAML 239
>gi|255070403|ref|XP_002507283.1| chlorophyll a/b-binding protein, chloroplast precursor [Micromonas
sp. RCC299]
gi|226522558|gb|ACO68541.1| chlorophyll a/b-binding protein, chloroplast precursor [Micromonas
sp. RCC299]
Length = 247
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 71/205 (34%), Positives = 105/205 (51%), Gaps = 31/205 (15%)
Query: 20 ICNDVNKSSIGITSAFLPAKSGTTRRYLATVVRAQQRPTWLPGVDPPPYLDGTLAGDFGF 79
+ + S G+ S A RR+ VRA WLPG PPPYLDGT+AGD+GF
Sbjct: 1 MASITQASFFGLNSVRSSATKKIARRHHGFAVRAGTH--WLPGTQPPPYLDGTMAGDYGF 58
Query: 80 DPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKF 139
DPL LG +P++L + +AEL++ R+AM AGILFTD + LP W+EAG
Sbjct: 59 DPLRLGANPDTLPYLQEAELMNGRWAMHATAGILFTDAV------GLPKWWEAGEAALGD 112
Query: 140 ASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPL 199
+ +TL Q+++M F E R +++ G G+F P P G
Sbjct: 113 WNLQTLVAFQVVIMAFLEAARIRGFMTTGQSGVIGNF-----------PFDPTG------ 155
Query: 200 GLAKDIRNAREWKLKEIKNGLICLV 224
+++ E ++KE+KNG + ++
Sbjct: 156 ------QDSPEMRVKEVKNGRLAMM 174
>gi|307110650|gb|EFN58886.1| hypothetical protein CHLNCDRAFT_29899 [Chlorella variabilis]
Length = 266
Score = 115 bits (288), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 74/178 (41%), Positives = 101/178 (56%), Gaps = 15/178 (8%)
Query: 49 TVVRAQQRPTWLPGVDPPPYLDGT-LAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMA 107
VVRA R WLPG D P +L+ + L G+FGFDPLGLG +PE L W+ ++E VH R+AM
Sbjct: 30 VVVRAAARANWLPGNDFPAHLENSPLPGNFGFDPLGLGANPERLAWFAESERVHCRWAML 89
Query: 108 GVAGILFTDLLRVTGIRELPVWYEAGA-VEFKFASTRTLFIVQLLLMGFAETKRYMDYIS 166
GVAGIL +L+R WY + VE F T L +L +M + E++R D +
Sbjct: 90 GVAGILVQELVRPDVF-----WYTSAVDVELPFDIT-GLVAFELFVMHWVESRRGYDIKN 143
Query: 167 PGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
PGS ++ F + L EPGYPGG + P + E K+KEIKNG + ++
Sbjct: 144 PGSMDQDPIFSNFK--LPSHEPGYPGG-IFAPFVPG----SMEELKVKEIKNGRLAML 194
>gi|302851012|ref|XP_002957031.1| light-harvesting chlorophyll-a/b protein of photosystem I [Volvox
carteri f. nagariensis]
gi|300257587|gb|EFJ41833.1| light-harvesting chlorophyll-a/b protein of photosystem I [Volvox
carteri f. nagariensis]
Length = 270
Score = 115 bits (288), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 74/196 (37%), Positives = 106/196 (54%), Gaps = 16/196 (8%)
Query: 44 RRYLATVVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPES-----LRWYVQAE 98
+ +ATV R++ + YLDGTL GDFGFDPLGL + S +W +E
Sbjct: 33 EKSIATVDRSKDQLYVGASQSSLAYLDGTLPGDFGFDPLGLLDPVNSGGFVEPKWLQYSE 92
Query: 99 LVHARFAMAGVAGILFTDLLRVTGI---RELPVWYE------AGAVEFKFASTRTLFIVQ 149
++H R+AM G AG + ++L G+ + VWYE AG+ + +A T+F ++
Sbjct: 93 VIHGRWAMLGAAGCIAPEILGAAGLIPEKTNIVWYESGVIPPAGSYDGYWADPYTIFFIE 152
Query: 150 LLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGL-EPGYPGGPLLNPLGLAKDIRNA 208
++ M FAE +R D+ PGS K+ F GLE G +P YPGGP N L K
Sbjct: 153 IVAMQFAELRRLQDFRYPGSMGKQ-YFLGLEKIFAGSGDPAYPGGPFFNLFNLGKTEAAM 211
Query: 209 REWKLKEIKNGLICLV 224
+E KLKEIKNG + ++
Sbjct: 212 KELKLKEIKNGRLAML 227
>gi|307106621|gb|EFN54866.1| hypothetical protein CHLNCDRAFT_134943 [Chlorella variabilis]
Length = 268
Score = 115 bits (288), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 75/177 (42%), Positives = 94/177 (53%), Gaps = 13/177 (7%)
Query: 59 WLPGVDP--PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTD 116
W PG P YLDG+L GD GFDPLGLG PE L W V AE+ H R AM G AGIL T
Sbjct: 50 WFPGNTAVVPDYLDGSLVGDNGFDPLGLGSSPEQLSWNVHAEVFHGRLAMTGCAGILLTS 109
Query: 117 LLRVTGIRELPVWYEAGAVEFK---FASTRTLFIVQLLLMGFAETKRYMDYISPGSQTK- 172
LL G ++P WYEAG V + S L ++L GFAE KR D +PGSQ
Sbjct: 110 LLHAGGA-DVPEWYEAGKVYMEKNPNVSFGALVYSTIVLSGFAEFKRLNDIRNPGSQGSG 168
Query: 173 --EGSFFGLEAALEGLEPG--YPGGPLLNPLGLAK-DIRNAREWKLKEIKNGLICLV 224
F G+ +G G Y GG +P+GL + ++K EI+NG + ++
Sbjct: 169 ILPEDFKGV-GGPQGRTVGGPYVGGRFFDPMGLCRGSPEQTLKYKWNEIRNGRLAMI 224
>gi|302824061|ref|XP_002993677.1| light harvesting complex [Selaginella moellendorffii]
gi|300138500|gb|EFJ05266.1| light harvesting complex [Selaginella moellendorffii]
Length = 281
Score = 115 bits (288), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 72/185 (38%), Positives = 99/185 (53%), Gaps = 18/185 (9%)
Query: 55 QRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESL------RWYVQAELVHARFAMAG 108
R W YLDGTL GD+GFDPLGL DP W AE+++ R+AM G
Sbjct: 58 NRQLWFASSQSLSYLDGTLPGDYGFDPLGL-SDPAGAGNFMTPNWLSYAEIINGRYAMLG 116
Query: 109 VAGILFTDLLRVTGI---RELPVWYEAG----AVEFKF-ASTRTLFIVQLLLMGFAETKR 160
AG + ++ GI VW++ G A + + A TLF +++ LMGFAE +R
Sbjct: 117 AAGAIAPEIFGKIGIIPQETAVVWFKTGVFPPAGTYNYWADPYTLFFLEMALMGFAEHRR 176
Query: 161 YMDYISPGSQTKEGSFFGLEAALEGL-EPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNG 219
D+ PGS K+ F G E L G +P YPGG + NP G KD ++ R K+KE+KNG
Sbjct: 177 AQDFYKPGSMGKQ-YFLGFEKYLGGSGDPAYPGG-IFNPFGFGKDEKSMRTLKIKEVKNG 234
Query: 220 LICLV 224
+ ++
Sbjct: 235 RLAML 239
>gi|192764591|gb|ACF05839.1| chloroplast light-harvesting complex II protein [Populus tremula]
gi|192764593|gb|ACF05840.1| chloroplast light-harvesting complex II protein [Populus tremula]
Length = 174
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 73/173 (42%), Positives = 96/173 (55%), Gaps = 24/173 (13%)
Query: 45 RYLATVVRAQQRPTWLPGVD------PPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAE 98
R L V AQ + +W+P V P +LDG+L GD+GFDPLGLG+DP L+WY +AE
Sbjct: 8 RKLTIVAAAQPKKSWIPAVKGGGSFVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAE 67
Query: 99 LVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGA-----VEFKFASTRTLFIVQLLLM 153
L+H R+AMA V I +GI W+EAGA F F S L QL+LM
Sbjct: 68 LIHGRWAMAAVVSIFVGQAW--SGIP----WFEAGADPGAIAPFSFGS---LLGTQLILM 118
Query: 154 GFAETKRYMDYISPGSQTKE----GSFFGLEAALEGLEPGYPGGPLLNPLGLA 202
G+ E+KR++D+ +P SQ+ E S A + GYPGG +PLG A
Sbjct: 119 GWVESKRWVDFFNPESQSVEWATPWSKTAENFANATGDQGYPGGKFFDPLGFA 171
>gi|384251522|gb|EIE24999.1| light-harvesting chlorophyll a/b-binding protein Lhca3 [Coccomyxa
subellipsoidea C-169]
Length = 274
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 76/195 (38%), Positives = 109/195 (55%), Gaps = 14/195 (7%)
Query: 38 AKSGTTRR--YLATVVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYV 95
A++G R + + +Q R W PGV+ P YL+G LAGD+G+DPLGLG PE+L+WY
Sbjct: 24 ARAGPAPRSTFQVSAAASQGRRLWAPGVEAPSYLNGELAGDYGWDPLGLGAKPEALKWYR 83
Query: 96 QAELVHARFAMAGVAGILFTDLLR------VTGIRELPVWYEAGAVEFKFASTRTLFIVQ 149
QAELVHAR+AM VAGIL ++++ G+ E G E K + L +
Sbjct: 84 QAELVHARWAMLAVAGILAQEIVKPGVFFYNAGLPENLPGINFGGPEGK-VNLGGLLAWE 142
Query: 150 LLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAR 209
LL + E +R+ D S ++ F G + + E GYPGG + +P G +K N +
Sbjct: 143 FLLFHWVEVRRWQDIKKKDSVNQDPIFKGNK--VPNPELGYPGG-IFDPFGFSKG--NFK 197
Query: 210 EWKLKEIKNGLICLV 224
E + KEIKNG + +V
Sbjct: 198 EVQTKEIKNGRLAMV 212
>gi|303324979|pdb|3LW5|2 Chain 2, Improved Model Of Plant Photosystem I
Length = 176
Score = 114 bits (286), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 63/139 (45%), Positives = 85/139 (61%), Gaps = 4/139 (2%)
Query: 87 DPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLF 146
DPESLRW VQAELVH+R+AM G AGI + L GI P WY AG E+ F T TLF
Sbjct: 2 DPESLRWNVQAELVHSRWAMLGAAGIFIPEFLTKLGILNTPSWYTAGEQEY-FTDTTTLF 60
Query: 147 IVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGL-AKDI 205
IV+L+ +G+AE +R+ D ++PG + F L G + GYPGG +PLG +
Sbjct: 61 IVELVFIGWAEGRRWADILNPGCVNTDPIF--PNNKLTGTDVGYPGGLWFDPLGWGSASP 118
Query: 206 RNAREWKLKEIKNGLICLV 224
+ +E + KEIKNG + ++
Sbjct: 119 QKLKELRTKEIKNGRLAML 137
>gi|192764575|gb|ACF05831.1| chloroplast light-harvesting complex II protein [Populus tremula]
Length = 174
Score = 114 bits (286), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 71/169 (42%), Positives = 95/169 (56%), Gaps = 16/169 (9%)
Query: 45 RYLATVVRAQQRPTWLPGVD------PPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAE 98
R L V AQ + +W+P V P +LDG+L GD+GFDPLGLG+DP L+WY +AE
Sbjct: 8 RKLTIVAAAQPKKSWIPAVKGGGSFVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAE 67
Query: 99 LVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVE-FKFASTRTLFIVQLLLMGFAE 157
L+H R+AMA V GI +GI + GA+ F F S L QL+LMG+ E
Sbjct: 68 LIHGRWAMAAVVGIFVGQAW--SGIPWFEACADPGAIAPFSFGS---LLGTQLILMGWVE 122
Query: 158 TKRYMDYISPGSQTKE----GSFFGLEAALEGLEPGYPGGPLLNPLGLA 202
+KR++D+ +P SQ+ E S A + GYPGG +PLG A
Sbjct: 123 SKRWVDFFNPESQSVEWATPWSKTAENFANATGDQGYPGGKFFDPLGFA 171
>gi|192764577|gb|ACF05832.1| chloroplast light-harvesting complex II protein [Populus tremula]
Length = 174
Score = 114 bits (286), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 71/169 (42%), Positives = 95/169 (56%), Gaps = 16/169 (9%)
Query: 45 RYLATVVRAQQRPTWLPGVD------PPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAE 98
R L V AQ + +W+P V P +LDG+L GD+GFDPLGLG+DP L+WY +AE
Sbjct: 8 RKLTIVAAAQPKKSWIPAVKGGGSFVDPEWLDGSLPGDYGFDPLGLGKDPTFLKWYREAE 67
Query: 99 LVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVE-FKFASTRTLFIVQLLLMGFAE 157
L+H R+AMA V GI +GI + GA+ F F S L QL+LMG+ E
Sbjct: 68 LIHGRWAMAAVVGIFVGQAW--SGIPWFEACADPGAIAPFSFGS---LLGTQLILMGWVE 122
Query: 158 TKRYMDYISPGSQTKE----GSFFGLEAALEGLEPGYPGGPLLNPLGLA 202
+KR++D+ +P SQ+ E S A + GYPGG +PLG A
Sbjct: 123 SKRWVDFFNPESQSVEWATPWSKTAENFANATGDQGYPGGKFFDPLGFA 171
>gi|326487444|dbj|BAJ89706.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326493456|dbj|BAJ85189.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326529461|dbj|BAK04677.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 255
Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 80/217 (36%), Positives = 113/217 (52%), Gaps = 34/217 (15%)
Query: 32 TSAFLPAKSGTTRRYLATVVRAQQRPTWLPGVDP------PPYLDGTLAGDFGFDPLGLG 85
+A L A TRR + A ++ +W+P P +LDG+L GDFGFDPLGLG
Sbjct: 28 NAASLGAAKPVTRRVVVVAAAADKK-SWIPAFKSDAEFINPSWLDGSLPGDFGFDPLGLG 86
Query: 86 EDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGA-----VEFKFA 140
+DP L+WY +AEL+H R+AMA V GI +G+ W+EAGA F F
Sbjct: 87 KDPAFLKWYREAELIHGRWAMAAVLGIFIGQ--AYSGV----PWFEAGAQPGAVAPFSFG 140
Query: 141 STRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGL----EPGYPGGPLL 196
S L QLLLMG+ E+KR++D+ +P SQ+ E + A E GYPGG
Sbjct: 141 S---LLGTQLLLMGWVESKRWVDFFNPDSQSVEWATPWSRTAENFANFTGEQGYPGGKFF 197
Query: 197 NPLGLAKDIRNA---------REWKLKEIKNGLICLV 224
+PLGL + ++ K+ EIK+ + ++
Sbjct: 198 DPLGLGGETKDGIYIPDTEKLERLKVAEIKHSRLAML 234
>gi|357163903|ref|XP_003579885.1| PREDICTED: chlorophyll a-b binding protein CP24 10A,
chloroplastic-like [Brachypodium distachyon]
Length = 256
Score = 114 bits (285), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 79/207 (38%), Positives = 108/207 (52%), Gaps = 34/207 (16%)
Query: 42 TTRRYLATVVRAQQRPTWLPGVDP------PPYLDGTLAGDFGFDPLGLGEDPESLRWYV 95
TRR + A ++ +W+P P +LDG+L GDFGFDPLGLG+DP L+WY
Sbjct: 39 ATRRVVVVAAAAAKK-SWIPAFKSDAEFINPSWLDGSLPGDFGFDPLGLGKDPAFLKWYR 97
Query: 96 QAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGA-----VEFKFASTRTLFIVQL 150
+AEL+H R+AMA V GI +G+ W+EAGA F F S L QL
Sbjct: 98 EAELIHGRWAMAAVLGIFVGQ--AYSGV----PWFEAGAQPGAVAPFSFGS---LLGTQL 148
Query: 151 LLMGFAETKRYMDYISPGSQTKE----GSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIR 206
LLMG+ E+KR++D+ +P SQ E S A + GYPGG +PLGL D +
Sbjct: 149 LLMGWVESKRWVDFFNPDSQAVEWATPWSRTADNFANSTGDQGYPGGKFFDPLGLGGDTK 208
Query: 207 NA---------REWKLKEIKNGLICLV 224
+ KL EIK+ + ++
Sbjct: 209 DGVYIPDTDKLERLKLAEIKHARLAML 235
>gi|307110371|gb|EFN58607.1| hypothetical protein CHLNCDRAFT_50418 [Chlorella variabilis]
Length = 212
Score = 114 bits (285), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 72/163 (44%), Positives = 98/163 (60%), Gaps = 14/163 (8%)
Query: 66 PPYLDGT-LAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI- 123
P +L G LAG+FGFDPL LG+D +L+WY QAEL + R+AM GVAGIL +LL TG+
Sbjct: 6 PAHLKGKDLAGNFGFDPLSLGKDEAALKWYTQAELQNGRWAMLGVAGILVQELLHKTGLG 65
Query: 124 -RELPV-WYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEA 181
+ V W++AG F +A TL + LL +AE R DY PGS + FG
Sbjct: 66 GKAADVYWFDAGNNTF-WAPKETLIAISFLLFAWAECNRAQDYFKPGSNVSDP--FG--N 120
Query: 182 ALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
+++ +E GYPG +PL K+ + WKLKEIKNG + ++
Sbjct: 121 SIKYVELGYPG---FDPLSFTKN--DYAGWKLKEIKNGRLAML 158
>gi|302833175|ref|XP_002948151.1| light-harvesting protein of photosystem I [Volvox carteri f.
nagariensis]
gi|300266371|gb|EFJ50558.1| light-harvesting protein of photosystem I [Volvox carteri f.
nagariensis]
Length = 247
Score = 112 bits (281), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 70/180 (38%), Positives = 97/180 (53%), Gaps = 30/180 (16%)
Query: 45 RYLATVVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARF 104
R A V A RP W PG P +LDGT+ GD+GFDPL LG +PE L+W+ +AEL + R+
Sbjct: 18 RATAVRVSASTRPMWYPGATAPKHLDGTMLGDYGFDPLRLGTNPEQLKWFREAELTNGRW 77
Query: 105 AMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDY 164
AMA VAGILFTDL+ LP ++ AGA ++ T TL ++++ + E KRY Y
Sbjct: 78 AMAAVAGILFTDLV------GLPKFWLAGAEKYAL-DTPTLALIEVAVFAVLEGKRYDIY 130
Query: 165 ISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
G E G+ +PLG+ + E KLKE+KNG + ++
Sbjct: 131 KKTG------------------ETGFLSFAPFDPLGM-----KSEEMKLKELKNGRLAML 167
>gi|192764595|gb|ACF05841.1| chloroplast light-harvesting complex II protein [Populus tremula]
Length = 174
Score = 112 bits (281), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 70/169 (41%), Positives = 94/169 (55%), Gaps = 16/169 (9%)
Query: 45 RYLATVVRAQQRPTWLPGVD------PPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAE 98
R L V AQ + +W+P V P +LDG+L GD+GFDPLGLG+DP L+WY +AE
Sbjct: 8 RKLTIVAAAQPKKSWIPAVKGGGSFVDPEWLDGSLPGDYGFDPLGLGKDPTFLKWYREAE 67
Query: 99 LVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVE-FKFASTRTLFIVQLLLMGFAE 157
L+H R+AMA V I +GI + GA+ F F S L QL+LMG+ E
Sbjct: 68 LIHGRWAMAAVVSIFVGQAW--SGIPWFEACADPGAIAPFSFGS---LLGTQLILMGWVE 122
Query: 158 TKRYMDYISPGSQTKE----GSFFGLEAALEGLEPGYPGGPLLNPLGLA 202
+KR++D+ +P SQ+ E S A + GYPGG +PLG A
Sbjct: 123 SKRWVDFFNPESQSVEWATPWSKTAENFANATGDQGYPGGKFFDPLGFA 171
>gi|303290578|ref|XP_003064576.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas pusilla CCMP1545]
gi|226454174|gb|EEH51481.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas pusilla CCMP1545]
Length = 286
Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 79/198 (39%), Positives = 109/198 (55%), Gaps = 28/198 (14%)
Query: 49 TVVRAQQRPT---WLPGVDPP--PYLDGTLAGDFGFDPLGLGEDPESL------RWYVQA 97
VV+AQ R +L GV YLDGTL GDFGFDPLG+ DPE +W +
Sbjct: 50 AVVKAQPRSKDDLYLMGVSDQNMAYLDGTLPGDFGFDPLGM-SDPEGAGGFVNPQWLAYS 108
Query: 98 ELVHARFAMAGVAGILFTDLLRVTGIRELP-----VWYEAGAVEFK-----FASTRTLFI 147
E++H R+AM GVAGI+ ++L G+ +P VW+ +GA+ + +A+ T+F
Sbjct: 109 EVIHGRWAMLGVAGIVAPEILGQAGL--IPESTGLVWFTSGAIPPQGTFDYWANPMTIFW 166
Query: 148 VQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGL-EPGYPGGPLLNPLGLAKDIR 206
V + +M FAE KR DY PGSQ ++ G E G P YPGG N GL KD
Sbjct: 167 VNMCMMNFAEIKRGQDYWYPGSQAEQ-PLMGWEKGFAGSGNPAYPGGKYFNFAGLGKD-- 223
Query: 207 NAREWKLKEIKNGLICLV 224
+ + + KEIKNG + ++
Sbjct: 224 DMAKMQKKEIKNGRLAMM 241
>gi|145079136|tpg|DAA05900.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca9 [Acetabularia acetabulum]
Length = 192
Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 67/175 (38%), Positives = 93/175 (53%), Gaps = 29/175 (16%)
Query: 50 VVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGV 109
V + R WL G P +LDG+LAGDFGFDPLGLG +P+ L+WYV+AE + R+AM V
Sbjct: 3 VNASSDRQMWLVGAAAPEHLDGSLAGDFGFDPLGLGSEPDRLKWYVEAEKTNGRWAMMAV 62
Query: 110 AGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGS 169
AGIL +LL VT P W+EAGA ++ L ++ +++GF ETKRY + + GS
Sbjct: 63 AGILGQELLGVT-----PKWFEAGAKDYGI-PFFPLLAMEAIILGFLETKRYQGFKTTGS 116
Query: 170 QTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
LN N+ + +LKEIKNG + ++
Sbjct: 117 SG-----------------------FLNSFPFDPANMNSPDMQLKEIKNGRLAMI 148
>gi|413954857|gb|AFW87506.1| chlorophyll a-b binding protein 8 [Zea mays]
Length = 209
Score = 112 bits (279), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 69/168 (41%), Positives = 94/168 (55%), Gaps = 19/168 (11%)
Query: 73 LAGDFGFDPLGLGEDPESL------RWYVQAELVHARFAMAGVAGILFTDLLRVTGI--- 123
L GD+GFDPLGL DPE +W E+++ R+AM G G + ++ GI
Sbjct: 6 LPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEIFGKMGIIPP 64
Query: 124 -RELPVWYEAGAVE-----FKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFF 177
LP W++ G + +A + TLF+ + LMGFAE +R D+ +PGS K+ F
Sbjct: 65 ETALP-WFKTGVIPPAGTYNYWADSYTLFVFNMALMGFAEHRRLQDWYNPGSMGKQ-YFL 122
Query: 178 GLEAALEGL-EPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
GLE L G +P YPGGPL NPLG K + E KLKEIKNG + ++
Sbjct: 123 GLEKFLAGSGDPSYPGGPLFNPLGFGKTEKEMNELKLKEIKNGRLAML 170
>gi|302808848|ref|XP_002986118.1| light-harvesting complex [Selaginella moellendorffii]
gi|302815978|ref|XP_002989669.1| light-harvesting complex [Selaginella moellendorffii]
gi|300142640|gb|EFJ09339.1| light-harvesting complex [Selaginella moellendorffii]
gi|300146266|gb|EFJ12937.1| light-harvesting complex [Selaginella moellendorffii]
Length = 259
Score = 112 bits (279), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 82/224 (36%), Positives = 111/224 (49%), Gaps = 41/224 (18%)
Query: 32 TSAFLPAKSGTTRRYLATVVR------AQQRPTWLPGVD------PPPYLDGTLAGDFGF 79
++A L R +A R A + +WLPGV P +LDG+L GD+GF
Sbjct: 25 SNALLSHCPSNGARVMAMATRKISAKPASGKKSWLPGVRGGGDLVDPEWLDGSLPGDYGF 84
Query: 80 DPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYE-----AGA 134
DPLGLG+DP L+WY +AEL+H R+AMA V GI +GI W+E
Sbjct: 85 DPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAW--SGIP----WFEAGAAPGAV 138
Query: 135 VEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALE-----GLEPG 189
F F S L QLLLMG+ E+KRY+D+ P +Q E + A+ GL+ G
Sbjct: 139 APFSFGS---LLGTQLLLMGWVESKRYVDFFEPNTQAVEWATPWSRTAVNFANSTGLQ-G 194
Query: 190 YPGGPLLNPLGLA---------KDIRNAREWKLKEIKNGLICLV 224
YPGG +PL LA D + +L EIK+ + +V
Sbjct: 195 YPGGKFFDPLRLAGSMKGGDYVPDFDKLQRLQLAEIKHARLAMV 238
>gi|403241542|gb|AFR32945.1| light-harvesting complex photosystem II, partial [Selaginella
martensii]
Length = 226
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 73/197 (37%), Positives = 104/197 (52%), Gaps = 41/197 (20%)
Query: 56 RPTWLPGVDP------PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGV 109
+ +WLPGV P +LDG+L GD+GFDPLGLG+DP L+WY +AE++H R+AMA V
Sbjct: 22 KKSWLPGVRAGGDLVDPSWLDGSLPGDYGFDPLGLGKDPAFLKWYREAEIIHGRWAMAAV 81
Query: 110 AGILFTDLLRVTGIRELPVWYE-----AGAVEFKFASTRTLFIVQLLLMGFAETKRYMDY 164
GI +G+ W+E F F S L QLLLMG+ E+KRY+D+
Sbjct: 82 LGIFVGQAW--SGVP----WFEAGAAPGAVAPFSFGS---LLGTQLLLMGWVESKRYVDF 132
Query: 165 ISPGSQ--------TKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNA-------- 208
PG+Q ++ S FG L+ GYPGG +PL LA +++
Sbjct: 133 FDPGTQALEWATPWSRTASNFGNSTGLQ----GYPGGKFFDPLRLAGEMKGGDYVPDFEK 188
Query: 209 -REWKLKEIKNGLICLV 224
+L EIK+ + ++
Sbjct: 189 LERLQLAEIKHARLAML 205
>gi|428230864|gb|AFY99054.1| chlorophyll binding protein, partial [Cyanea asplenifolia]
Length = 197
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 67/163 (41%), Positives = 93/163 (57%), Gaps = 19/163 (11%)
Query: 78 GFDPLGLGEDPESL------RWYVQAELVHARFAMAGVAGILFTDLLRVTGI----RELP 127
GFDPLGL DPE +W E+++ RFAM G AG + ++ G+ LP
Sbjct: 1 GFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRFAMLGAAGAIAPEIFGKLGLIPAETALP 59
Query: 128 VWYEAGAVE-----FKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAA 182
W++ G + +A TLF+ ++ LMGFAE +R+ D+ +PGS K+ F GLE
Sbjct: 60 -WFQTGVIPPAGSYTYWADPYTLFVFEMALMGFAEHRRFQDWYNPGSMGKQ-YFLGLEKG 117
Query: 183 LEGL-EPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
L G P YPGGP NPLG KD ++ +E KLKEIKNG + ++
Sbjct: 118 LAGSGNPAYPGGPFFNPLGFGKDEKSMKELKLKEIKNGRLAML 160
>gi|87313169|gb|ABD37881.1| light-harvesting chlorophyll-a/b binding protein Lhca4.1
[Mesostigma viride]
gi|145079679|tpg|DAA05923.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca2 [Mesostigma viride]
Length = 264
Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 66/179 (36%), Positives = 98/179 (54%), Gaps = 30/179 (16%)
Query: 47 LATVVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAM 106
++TVVRA W G PP YLDG++ GD+G+DPL +G +PE L+WY Q E+ + R+AM
Sbjct: 37 VSTVVRADLGKKWYTGAKPPAYLDGSMPGDYGYDPLRMGGNPELLKWYQQGEIENGRWAM 96
Query: 107 AGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFA--STRTLFIVQLLLMGFAETKRYMDY 164
GVAG+LFTD L GI +LP WYEAGAV + +TL +++ + E R +
Sbjct: 97 IGVAGMLFTDALTQFGISDLPDWYEAGAVAQASSPFDLQTLIAIEIFVFATVEGFRISTW 156
Query: 165 ISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G +PG+ L+ +G+ ++ + +LKEIKNG + +
Sbjct: 157 KKTG------------------KPGF-----LDIMGM-----DSPDMRLKEIKNGRLAM 187
>gi|303324981|pdb|3LW5|4 Chain 4, Improved Model Of Plant Photosystem I
Length = 166
Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 63/143 (44%), Positives = 88/143 (61%), Gaps = 8/143 (5%)
Query: 84 LGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTR 143
L EDPE+LRW+VQAELV+ R+AM GVAG+L ++ GI +P WY AG E+ FAS+
Sbjct: 1 LAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGIINVPKWYAAGKEEY-FASSS 59
Query: 144 TLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAK 203
TLF+++ +L + E +R+ D +PGS ++ F + +L E GYPGG + NPL A
Sbjct: 60 TLFVIEFILSHYVEIRRWQDIKNPGSVNQDPIF--KQYSLPAGEVGYPGG-IFNPLNFAP 116
Query: 204 DIRNAREWKLKEIKNGLICLVLC 226
+ E K KEI NG + L
Sbjct: 117 TL----EAKEKEIANGRLMLAFL 135
>gi|255074955|ref|XP_002501152.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas sp. RCC299]
gi|226516415|gb|ACO62410.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas sp. RCC299]
Length = 293
Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 71/174 (40%), Positives = 97/174 (55%), Gaps = 23/174 (13%)
Query: 68 YLDGTLAGDFGFDPLGLGEDPESL------RWYVQAELVHARFAMAGVAGILFTDLLRVT 121
YLDGTL GDFGFDPLG+ DPE +W +E++H R+AM GVAGI+ ++L
Sbjct: 81 YLDGTLPGDFGFDPLGM-SDPEGAGGFVNPQWLAYSEVIHGRWAMLGVAGIVAPEILGGM 139
Query: 122 GIRELP-----VWYEAGAVEFK-----FASTRTLFIVQLLLMGFAETKRYMDYISPGSQT 171
G+ +P VW+ +GA+ + +A+ T+F V + +M FAE KR DY PGSQ
Sbjct: 140 GV--IPESTGLVWFTSGAIPPQGTFDYWANPMTIFWVNMCMMNFAEIKRGQDYWFPGSQA 197
Query: 172 KEGSFFGLEAALEGL-EPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
E G E G P YPGG NP L KD + + KE+KNG + ++
Sbjct: 198 -ETPLLGWEKGFGGSGNPTYPGGKWFNPFNLGKD--DMASMQKKEVKNGRLAMM 248
>gi|168046799|ref|XP_001775860.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162672867|gb|EDQ59399.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 227
Score = 110 bits (276), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 76/172 (44%), Positives = 105/172 (61%), Gaps = 17/172 (9%)
Query: 68 YLDGTLAGDFGFDPLGLGEDPESL------RWYVQAELVHARFAMAGVAGILFTDLLRVT 121
YLDGTL GD+GFDPLGL DPE +W AE+++ RFAM G AG + ++L
Sbjct: 19 YLDGTLPGDYGFDPLGL-MDPEGAGGFIDPQWLPYAEIINGRFAMLGAAGAIAPEILGRI 77
Query: 122 GI--RELPV-WYEAGAV----EFKF-ASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKE 173
G+ +E + W+++G + + + A TLF+++L LMGFAE +R DY PGS K+
Sbjct: 78 GLIPQETAIPWFQSGVIPPVGNYSYWADPYTLFVLELALMGFAEHRRAQDYYKPGSMGKQ 137
Query: 174 GSFFGLEAALEGL-EPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
F GLE L G P YPGGP+ N LG K+ + +E KLKEIKNG + ++
Sbjct: 138 -YFLGLEKFLGGSGNPAYPGGPIFNFLGFGKNEKELKELKLKEIKNGRLAMM 188
>gi|87313215|gb|ABD37904.1| light-harvesting chlorophyll-a/b binding protein Lhca2
[Chlamydomonas incerta]
Length = 254
Score = 110 bits (274), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 77/212 (36%), Positives = 112/212 (52%), Gaps = 27/212 (12%)
Query: 37 PAKSGTTR-------RYLATVVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPE 89
PAK+ R + +A V R++ + YLDGTL GDFGFDPLGL +
Sbjct: 5 PAKANRARLVCRAEEKSIAKVDRSKDQLYVGASQSSLAYLDGTLPGDFGFDPLGLLDPVN 64
Query: 90 S-----LRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELP-----VWYE------AG 133
S +W +E++HAR+AM G AG + ++L G+ +P W+E AG
Sbjct: 65 SGGFIEPKWLQYSEVIHARWAMLGAAGCIAPEVLGAAGL--IPDATNIKWFESGVIPPAG 122
Query: 134 AVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGL-EPGYPG 192
+ + +A T+F V+++ M FAE +R D+ PGS ++ F GLEA +G + YPG
Sbjct: 123 SYDGYWADPYTIFFVEIVAMQFAELRRLQDFRYPGSMGQQ-YFLGLEAIFKGSGDAAYPG 181
Query: 193 GPLLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
GP N L K +E KLKEIKNG + ++
Sbjct: 182 GPFFNLFNLGKTEAAMKELKLKEIKNGRLAML 213
>gi|255077157|ref|XP_002502229.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas sp. RCC299]
gi|226517494|gb|ACO63487.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas sp. RCC299]
Length = 233
Score = 109 bits (273), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 71/189 (37%), Positives = 101/189 (53%), Gaps = 31/189 (16%)
Query: 37 PAKSGTTRRYLATVVRAQQRPTWLP-GVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYV 95
PAK+ + R + V+A R WL P +LDGTL GDFGFDPLGLG DPE L++Y
Sbjct: 32 PAKAPVSAR-ASLKVQAANRELWLKDSTVAPAHLDGTLPGDFGFDPLGLGADPERLKYYQ 90
Query: 96 QAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGF 155
+AEL++AR+AM VAGI T++L + G WYEAGA E+ L VQ +MG
Sbjct: 91 EAELMNARWAMMAVAGICTTEILGIGG-----PWYEAGAAEYDL-PINALLAVQFPVMGI 144
Query: 156 AETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKE 215
E +R +++ G G+ +P +P+G+ N + LKE
Sbjct: 145 LELRRIRGWLATGKS--------------GVNETFP----WDPMGM-----NGDQMALKE 181
Query: 216 IKNGLICLV 224
+KNG + ++
Sbjct: 182 VKNGRLAMI 190
>gi|428230866|gb|AFY99055.1| chlorophyll binding protein, partial [Lobelia erinus]
Length = 197
Score = 109 bits (272), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 66/163 (40%), Positives = 92/163 (56%), Gaps = 19/163 (11%)
Query: 78 GFDPLGLGEDPESL------RWYVQAELVHARFAMAGVAGILFTDLLRVTGI----RELP 127
GFDPLGL DPE +W E+++ RFAM G AG + ++ G+ LP
Sbjct: 1 GFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRFAMLGAAGAIAPEIFGKLGLIPAETALP 59
Query: 128 VWYEAGAVE-----FKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAA 182
W++ G + +A TLF+ ++ LMGFAE +R D+ +PGS K+ F GLE
Sbjct: 60 -WFQTGVIPPAGSYTYWADPYTLFVFEMALMGFAEHRRLQDWYNPGSMGKQ-YFLGLEKG 117
Query: 183 LEGL-EPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
G +P YPGGP NPLG KD ++ +E KLKEIKNG + ++
Sbjct: 118 FAGSGDPAYPGGPFFNPLGFGKDEKSMKELKLKEIKNGRLAML 160
>gi|116783276|gb|ABK22868.1| unknown [Picea sitchensis]
Length = 233
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 71/199 (35%), Positives = 91/199 (45%), Gaps = 51/199 (25%)
Query: 29 IGITSAFLPAKSGTTRRYLATVVRAQQ--RPTWLPGVDPPPYLDGTLAGDFGFDPLGLGE 86
+G + +K+ RR V A Q RP W PG PPP+LDG+L DFGFDPLGLG
Sbjct: 44 VGRAVSLRQSKAAMPRRAAVIVSEAVQTERPLWFPGTTPPPWLDGSLPADFGFDPLGLGS 103
Query: 87 DPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLF 146
DPE+L+W VQ+ELVH R+AM G AGI +LL GI
Sbjct: 104 DPETLKWNVQSELVHCRWAMLGAAGIFIPELLTKLGILN--------------------- 142
Query: 147 IVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAK-DI 205
D I P ++ L G + GYPGG +PLG
Sbjct: 143 ---------------TDPIFPNNK------------LTGTDVGYPGGLWFDPLGWGSGSP 175
Query: 206 RNAREWKLKEIKNGLICLV 224
+E + KEIKNG + ++
Sbjct: 176 EKIKELRTKEIKNGRLAML 194
>gi|40714511|dbj|BAD06919.1| light-harvesting chlorophyll-a/b protein of photosystem I (Type
III) [Chlamydomonas reinhardtii]
Length = 267
Score = 108 bits (271), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 76/212 (35%), Positives = 111/212 (52%), Gaps = 27/212 (12%)
Query: 37 PAKSGTTR-------RYLATVVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPE 89
PAK+ R + +A V R++ + YLDG+L GDFGFDPLGL +
Sbjct: 18 PAKANRARLVCRAEEKSIAKVDRSKDQLYVGASQSSLAYLDGSLPGDFGFDPLGLLDPVN 77
Query: 90 S-----LRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELP-----VWYE------AG 133
S +W +E++HAR+AM G AG + ++L G+ +P W+E AG
Sbjct: 78 SGGFIEPKWLQYSEVIHARWAMLGAAGCIAPEVLGAAGL--IPDATNIKWFESGVIPPAG 135
Query: 134 AVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGL-EPGYPG 192
+ +A T+F V+++ M FAE +R D+ PGS ++ F GLEA +G + YPG
Sbjct: 136 SYNGYWADPYTIFFVEIVAMQFAELRRLQDFRYPGSMGQQ-YFLGLEAIFKGSGDAAYPG 194
Query: 193 GPLLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
GP N L K +E KLKEIKNG + ++
Sbjct: 195 GPFFNLFNLGKTEAAMKELKLKEIKNGRLAML 226
>gi|225580693|gb|ACN94454.1| photosystem I light-harvesting cholrophyll-a/b protein 3
[Dunaliella salina]
Length = 286
Score = 108 bits (271), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 70/178 (39%), Positives = 100/178 (56%), Gaps = 23/178 (12%)
Query: 68 YLDGTLAGDFGFDPLGLGEDPE-----------SLRWYVQAELVHARFAMAGVAGILFTD 116
YLDGTL GD+GFDPLGL DP + RW +E++HAR+AM G AG + +
Sbjct: 69 YLDGTLPGDYGFDPLGL-LDPTVSNGQGAGGFVNPRWLQYSEVIHARWAMLGAAGCIAPE 127
Query: 117 LLRVTGI--RELPV-WYEAGAVE----FK--FASTRTLFIVQLLLMGFAETKRYMDYISP 167
+L G+ E V W+ G + +K +A TLF ++++ + FAE KR DY +P
Sbjct: 128 ILGKAGVIPAETAVDWFRTGVIPPAGVYKDFWADPFTLFFIEVVAIQFAELKRLQDYKNP 187
Query: 168 GSQTKEGSFFGLEAALEGLE-PGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
GSQ+++ F GLE +G + P YPGGP N K ++ KL EIKNG + ++
Sbjct: 188 GSQSRQ-YFLGLEGLFKGSDNPAYPGGPFFNFANFGKTEAEMKKLKLNEIKNGRLAML 244
>gi|159486759|ref|XP_001701405.1| light-harvesting chlorophyll-a/b protein of photosystem I, type III
[Chlamydomonas reinhardtii]
gi|158271707|gb|EDO97521.1| light-harvesting chlorophyll-a/b protein of photosystem I, type III
[Chlamydomonas reinhardtii]
Length = 298
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 69/174 (39%), Positives = 98/174 (56%), Gaps = 20/174 (11%)
Query: 68 YLDGTLAGDFGFDPLGLGEDPES-----LRWYVQAELVHARFAMAGVAGILFTDLLRVTG 122
YLDG+L GDFGFDPLGL + S +W +E++HAR+AM G AG + ++L G
Sbjct: 56 YLDGSLPGDFGFDPLGLLDPVNSGGFIEPKWLQYSEVIHARWAMLGAAGCIAPEVLGAAG 115
Query: 123 IRELP-----VWYE------AGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQT 171
+ +P W+E AG+ +A T+F V+++ M FAE +R D+ PGS
Sbjct: 116 L--IPDATNIKWFESGVIPPAGSYNGYWADPYTIFFVEIVAMQFAELRRLQDFRYPGSMG 173
Query: 172 KEGSFFGLEAALEGL-EPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
++ F GLEA +G + YPGGP N L K +E KLKEIKNG + ++
Sbjct: 174 QQ-YFLGLEAIFKGSGDAAYPGGPFFNLFNLGKTEAAMKELKLKEIKNGRLAML 226
>gi|62638125|gb|AAX92668.1| chloroplast chlorophyll a-b binding protein [Dunaliella salina]
Length = 217
Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 53/120 (44%), Positives = 74/120 (61%), Gaps = 7/120 (5%)
Query: 49 TVVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAG 108
+V R W PG PP +LDG++ GD+GFDPL LG +P+ ++W+ +AEL + R+AMA
Sbjct: 35 SVAAQAAREMWYPGATPPAHLDGSMLGDYGFDPLRLGTNPDRMKWFREAELTNGRWAMAA 94
Query: 109 VAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
V GILFTDL+ LP W+EAGA + +TL I+++ + F E KRY Y G
Sbjct: 95 VVGILFTDLV------GLPKWWEAGAQTYPI-DNQTLAIIEIAVFAFLEAKRYEGYKKTG 147
>gi|543939|sp|P36494.1|CB4_SPIOL RecName: Full=Chlorophyll a-b binding protein CP24, chloroplastic;
Flags: Precursor
gi|437991|emb|CAA81105.1| 20 kDa protein of CP24 precursor protein [Spinacia oleracea]
Length = 261
Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 82/206 (39%), Positives = 108/206 (52%), Gaps = 27/206 (13%)
Query: 40 SGTTRRYLATVVRAQQRPTWLPGVD------PPPYLDGTLAGDFGFDPLGLGEDPESLRW 93
S T+R+ + A + +W+P V P +LDG+L GDFGFDPLGLG+DP L+W
Sbjct: 41 STTSRKLVVVAAAAAPKKSWIPAVKGGGNFLDPEWLDGSLPGDFGFDPLGLGKDPAFLKW 100
Query: 94 YVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFA--STRTLFIVQLL 151
Y +AEL+H R+AM V GI TGI W+EAGA A S TL QLL
Sbjct: 101 YREAELIHGRWAMLAVLGIFVGQAW--TGIP----WFEAGADPGAVAPFSFGTLLGTQLL 154
Query: 152 LMGFAETKRYMDYISPGSQTKE----GSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRN 207
LMG+ E+KR++D+ P SQ+ E S + E GYPGG +PL LA I N
Sbjct: 155 LMGWVESKRWVDFFDPDSQSVEWATPWSRTAENFSNSTGEQGYPGGKFFDPLSLAGTISN 214
Query: 208 A---------REWKLKEIKNGLICLV 224
KL EIK+ + ++
Sbjct: 215 GVYNPDTDKLERLKLAEIKHARLAML 240
>gi|145355794|ref|XP_001422134.1| photosystem I light harvesting complex, chlorophyll a/b binding
[Ostreococcus lucimarinus CCE9901]
gi|144582374|gb|ABP00451.1| photosystem I light harvesting complex, chlorophyll a/b binding
[Ostreococcus lucimarinus CCE9901]
Length = 281
Score = 107 bits (267), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 71/176 (40%), Positives = 101/176 (57%), Gaps = 24/176 (13%)
Query: 68 YLDGTLAGDFGFDPLGLGEDPESL------RWYVQAELVHARFAMAGVAGILFTDLLRVT 121
YLDG+L GD+GFDPLGL DPE +W +E++H R+AM GVAG++ ++L
Sbjct: 70 YLDGSLPGDYGFDPLGL-SDPEGAGGFINPQWLAYSEVIHGRWAMLGVAGMVAPEVLGGL 128
Query: 122 GIRELP-----VWYEAGAVEFK-----FASTRTLFIVQLLLMGFAETKRYMDYISPGSQT 171
GI +P VWY+AG + + +A+ T+F + LM FAE +R DY +PGS
Sbjct: 129 GI--IPQETGLVWYKAGMIPAQGTYDYWANPFTIFWINAALMNFAELRRAQDYWNPGSMG 186
Query: 172 KEGSFFGLEAALEGL-EPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICLVLC 226
K+ G E L G EP YPGG N +G K + + ++KEIKNG + ++ C
Sbjct: 187 KQ-ELIGWEKMLGGSGEPAYPGG-FFNIMGQGKS--DMAKMRVKEIKNGRLAMMAC 238
>gi|412988961|emb|CCO15552.1| predicted protein [Bathycoccus prasinos]
Length = 231
Score = 107 bits (266), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 67/165 (40%), Positives = 92/165 (55%), Gaps = 27/165 (16%)
Query: 60 LPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLR 119
LP + P YLDGT+AGD+GFDPLGLG DPE L++Y +AEL++AR+AM VAGI T+ L
Sbjct: 50 LPNIKTPDYLDGTIAGDYGFDPLGLGSDPERLKYYQEAELMNARWAMMAVAGICTTEAL- 108
Query: 120 VTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGL 179
GI+ WY AG ++ F L ++ MGF ETKR +++ G
Sbjct: 109 --GIQS--KWYMAGQEDYGFPINAQLAVL-FPTMGFLETKRITGWLATGKS--------- 154
Query: 180 EAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
G+ +P +PLG+ D + KLKEIKNG ++
Sbjct: 155 -----GINETFP----FDPLGMGAD---SDSMKLKEIKNGRAAMI 187
>gi|87313175|gb|ABD37884.1| light-harvesting chlorophyll-a/b binding protein Lhca5.2
[Mesostigma viride]
gi|145079736|tpg|DAA05927.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca9 [Mesostigma viride]
Length = 225
Score = 107 bits (266), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 70/197 (35%), Positives = 100/197 (50%), Gaps = 30/197 (15%)
Query: 30 GITSA-FLPAKSGTTRRYLA--TVVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGE 86
G+++A L A G + A VRA R WLP PP +L+GTL GD+G+DP+GL
Sbjct: 10 GVSAAPLLKASFGVKKATAARDVTVRAADRTLWLPNTVPPAHLNGTLPGDYGYDPIGLAT 69
Query: 87 DPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLF 146
DP+ L W+V+AE + R+AMAGVAGILFTD L + W+ GA L
Sbjct: 70 DPDRLAWFVEAERTNGRWAMAGVAGILFTDALHIGSAP----WFSIGAELESPIPLWGLA 125
Query: 147 IVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIR 206
++ ++ GF E KR + G GL +P +PLG+
Sbjct: 126 TIEFVIFGFLEMKRLEGWKKTGQN--------------GLLNWFP----FDPLGM----- 162
Query: 207 NAREWKLKEIKNGLICL 223
N++E +KE+KNG + +
Sbjct: 163 NSKEMMVKEVKNGRLAM 179
>gi|145079837|tpg|DAA05940.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca9 [Micromonas sp. CCMP490]
Length = 233
Score = 107 bits (266), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 68/175 (38%), Positives = 93/175 (53%), Gaps = 30/175 (17%)
Query: 51 VRAQQRPTWL-PGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGV 109
V+A R WL PP+LDGTL GDFGFDPLGLG DP L++Y +AEL+++R+AM V
Sbjct: 45 VKAAGRDLWLRDSAVAPPHLDGTLPGDFGFDPLGLGADPARLKYYQEAELMNSRWAMMAV 104
Query: 110 AGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGS 169
AGI TD L + G WYEAGA ++ F L VQ +MG E KR +++ G
Sbjct: 105 AGITTTDALNIGG-----PWYEAGAGDYDF-PIPALLAVQFPVMGILELKRIRGWLATGK 158
Query: 170 QTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
G+ +P +P+G+ D +KEIKNG + ++
Sbjct: 159 --------------SGVNSDFP----WDPMGMNND-----AMAVKEIKNGRLAMI 190
>gi|145079812|tpg|DAA05938.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca3 [Micromonas sp. CCMP490]
Length = 309
Score = 106 bits (265), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 72/174 (41%), Positives = 98/174 (56%), Gaps = 23/174 (13%)
Query: 68 YLDGTLAGDFGFDPLGLGEDPE------SLRWYVQAELVHARFAMAGVAGILFTDLLRVT 121
YLDGTL GDFGFDPLG+ DPE + +W +E++H R+AM GVAG++ ++L
Sbjct: 97 YLDGTLPGDFGFDPLGM-SDPEGQGGFVNPQWLAYSEVIHGRWAMLGVAGVVAPEVLGGM 155
Query: 122 GIRELP-----VWYEAGAV----EFKF-ASTRTLFIVQLLLMGFAETKRYMDYISPGSQT 171
GI +P VW+++GA+ F + A T+F V ++LM FAE KR DY PGSQ
Sbjct: 156 GI--IPADTGLVWFKSGAIPPQGTFDYWADPTTIFWVNMVLMNFAEVKRGQDYWYPGSQ- 212
Query: 172 KEGSFFGLEAALEGL-EPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
E G E G P YPGG N L K + + + KEIKNG + ++
Sbjct: 213 GETPLMGWEKGFAGSGAPAYPGGKYFNFANLGK--TDMAKMQKKEIKNGRLAMM 264
>gi|427338317|gb|AFY52157.1| chlorophyll binding protein, partial [Clermontia kohalae]
gi|427338319|gb|AFY52158.1| chlorophyll binding protein, partial [Clermontia kohalae]
gi|427338321|gb|AFY52159.1| chlorophyll binding protein, partial [Clermontia kohalae]
gi|427338323|gb|AFY52160.1| chlorophyll binding protein, partial [Clermontia kohalae]
gi|427338325|gb|AFY52161.1| chlorophyll binding protein, partial [Clermontia parviflora]
gi|427338327|gb|AFY52162.1| chlorophyll binding protein, partial [Clermontia parviflora]
gi|427338329|gb|AFY52163.1| chlorophyll binding protein, partial [Clermontia parviflora]
gi|427338331|gb|AFY52164.1| chlorophyll binding protein, partial [Clermontia parviflora]
gi|427338333|gb|AFY52165.1| chlorophyll binding protein, partial [Clermontia kakeana]
gi|427338335|gb|AFY52166.1| chlorophyll binding protein, partial [Clermontia kakeana]
gi|427338337|gb|AFY52167.1| chlorophyll binding protein, partial [Clermontia kakeana]
gi|427338339|gb|AFY52168.1| chlorophyll binding protein, partial [Clermontia grandiflora subsp.
grandiflora]
gi|427338341|gb|AFY52169.1| chlorophyll binding protein, partial [Clermontia grandiflora subsp.
grandiflora]
gi|427338343|gb|AFY52170.1| chlorophyll binding protein, partial [Clermontia grandiflora subsp.
grandiflora]
gi|427338345|gb|AFY52171.1| chlorophyll binding protein, partial [Clermontia grandiflora subsp.
grandiflora]
gi|427338347|gb|AFY52172.1| chlorophyll binding protein, partial [Clermontia micrantha]
gi|427338349|gb|AFY52173.1| chlorophyll binding protein, partial [Clermontia micrantha]
gi|427338351|gb|AFY52174.1| chlorophyll binding protein, partial [Clermontia micrantha]
gi|427338353|gb|AFY52175.1| chlorophyll binding protein, partial [Clermontia micrantha]
gi|427338355|gb|AFY52176.1| chlorophyll binding protein, partial [Clermontia arborescens subsp.
waihiae]
gi|427338357|gb|AFY52177.1| chlorophyll binding protein, partial [Clermontia arborescens subsp.
waihiae]
gi|427338359|gb|AFY52178.1| chlorophyll binding protein, partial [Clermontia arborescens subsp.
waihiae]
gi|427338361|gb|AFY52179.1| chlorophyll binding protein, partial [Clermontia tuberculata]
gi|427338363|gb|AFY52180.1| chlorophyll binding protein, partial [Clermontia tuberculata]
gi|427338365|gb|AFY52181.1| chlorophyll binding protein, partial [Clermontia tuberculata]
gi|427338367|gb|AFY52182.1| chlorophyll binding protein, partial [Clermontia tuberculata]
gi|427338369|gb|AFY52183.1| chlorophyll binding protein, partial [Clermontia arborescens subsp.
waihiae]
gi|427338371|gb|AFY52184.1| chlorophyll binding protein, partial [Clermontia arborescens subsp.
waihiae]
gi|427338373|gb|AFY52185.1| chlorophyll binding protein, partial [Clermontia arborescens subsp.
waihiae]
gi|427338375|gb|AFY52186.1| chlorophyll binding protein, partial [Clermontia arborescens subsp.
waihiae]
gi|427338383|gb|AFY52190.1| chlorophyll binding protein, partial [Clermontia waimeae]
gi|427338385|gb|AFY52191.1| chlorophyll binding protein, partial [Clermontia waimeae]
gi|427338387|gb|AFY52192.1| chlorophyll binding protein, partial [Clermontia waimeae]
gi|427338389|gb|AFY52193.1| chlorophyll binding protein, partial [Clermontia waimeae]
gi|427338391|gb|AFY52194.1| chlorophyll binding protein, partial [Clermontia parviflora]
gi|427338393|gb|AFY52195.1| chlorophyll binding protein, partial [Clermontia parviflora]
gi|427338395|gb|AFY52196.1| chlorophyll binding protein, partial [Clermontia parviflora]
gi|427338397|gb|AFY52197.1| chlorophyll binding protein, partial [Clermontia parviflora]
gi|427338399|gb|AFY52198.1| chlorophyll binding protein, partial [Clermontia parviflora]
gi|427338401|gb|AFY52199.1| chlorophyll binding protein, partial [Clermontia parviflora]
gi|427338403|gb|AFY52200.1| chlorophyll binding protein, partial [Clermontia parviflora]
gi|427338405|gb|AFY52201.1| chlorophyll binding protein, partial [Clermontia montis-loa]
gi|427338407|gb|AFY52202.1| chlorophyll binding protein, partial [Clermontia montis-loa]
gi|427338409|gb|AFY52203.1| chlorophyll binding protein, partial [Clermontia montis-loa]
gi|427338411|gb|AFY52204.1| chlorophyll binding protein, partial [Clermontia calophylla]
gi|427338413|gb|AFY52205.1| chlorophyll binding protein, partial [Clermontia clermontioides
subsp. clermontioides]
gi|427338415|gb|AFY52206.1| chlorophyll binding protein, partial [Clermontia clermontioides
subsp. clermontioides]
gi|427338417|gb|AFY52207.1| chlorophyll binding protein, partial [Clermontia clermontioides
subsp. clermontioides]
gi|427338419|gb|AFY52208.1| chlorophyll binding protein, partial [Clermontia montis-loa]
gi|427338421|gb|AFY52209.1| chlorophyll binding protein, partial [Clermontia montis-loa]
gi|427338423|gb|AFY52210.1| chlorophyll binding protein, partial [Clermontia montis-loa]
gi|427338425|gb|AFY52211.1| chlorophyll binding protein, partial [Clermontia montis-loa]
gi|427338427|gb|AFY52212.1| chlorophyll binding protein, partial [Clermontia calophylla]
gi|427338429|gb|AFY52213.1| chlorophyll binding protein, partial [Clermontia calophylla]
gi|427338431|gb|AFY52214.1| chlorophyll binding protein, partial [Clermontia waimeae]
gi|427338433|gb|AFY52215.1| chlorophyll binding protein, partial [Clermontia parviflora]
gi|427338435|gb|AFY52216.1| chlorophyll binding protein, partial [Clermontia parviflora]
gi|427338437|gb|AFY52217.1| chlorophyll binding protein, partial [Clermontia parviflora]
gi|427338439|gb|AFY52218.1| chlorophyll binding protein, partial [Clermontia oblongifolia
subsp. oblongifolia]
gi|427338441|gb|AFY52219.1| chlorophyll binding protein, partial [Clermontia kakeana]
gi|427338443|gb|AFY52220.1| chlorophyll binding protein, partial [Clermontia peleana]
gi|427338445|gb|AFY52221.1| chlorophyll binding protein, partial [Clermontia singuliflora]
gi|427338447|gb|AFY52222.1| chlorophyll binding protein, partial [Clermontia singuliflora]
gi|427338449|gb|AFY52223.1| chlorophyll binding protein, partial [Clermontia singuliflora]
gi|427338451|gb|AFY52224.1| chlorophyll binding protein, partial [Clermontia singuliflora]
gi|427338453|gb|AFY52225.1| chlorophyll binding protein, partial [Clermontia drepanomorpha]
gi|427338455|gb|AFY52226.1| chlorophyll binding protein, partial [Clermontia lindseyana]
gi|428230858|gb|AFY99051.1| chlorophyll binding protein, partial [Clermontia kakeana]
gi|428230860|gb|AFY99052.1| chlorophyll binding protein, partial [Clermontia arborescens subsp.
waihiae]
Length = 197
Score = 106 bits (265), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 65/163 (39%), Positives = 90/163 (55%), Gaps = 19/163 (11%)
Query: 78 GFDPLGLGEDPESL------RWYVQAELVHARFAMAGVAGILFTDLLRVTGI----RELP 127
GFDPLGL DPE +W E+ + RFAM G G + ++ G+ LP
Sbjct: 1 GFDPLGL-SDPEGTGGFIEPKWLAYGEVFNGRFAMLGAVGAIAPEIFGKLGLIPAETALP 59
Query: 128 VWYEAGAVE-----FKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAA 182
W++ G + +A TLF+ ++ LMGFAE +R D+ +PGS K+ F GLE
Sbjct: 60 -WFQTGVIPPAGSYTYWADPYTLFVFEMALMGFAEHRRLQDWYNPGSMGKQ-YFLGLEKG 117
Query: 183 LEGL-EPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
G +P YPGGP NPLG KD ++ +E KLKEIKNG + ++
Sbjct: 118 FAGSGDPAYPGGPFFNPLGFGKDEKSMKELKLKEIKNGRLAML 160
>gi|365268963|gb|AEW70714.1| light harvesting chlorophyll a-b binding protein 6 [Phyllostachys
edulis]
Length = 250
Score = 106 bits (265), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 77/190 (40%), Positives = 103/190 (54%), Gaps = 27/190 (14%)
Query: 56 RPTWLPGVDP------PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGV 109
+ +W+P V PP+LDG+L GD+GFDPLGLG+DP L+WY +AEL+H R+AM+ V
Sbjct: 46 KKSWVPAVKSDAEFINPPWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMSAV 105
Query: 110 AGILFTDLLRVTGIRELPVWYEAGAVEFKFA--STRTLFIVQLLLMGFAETKRYMDYISP 167
GI +G+ W+EAGA A S TL QLLLMG+ E+KR++D+ SP
Sbjct: 106 LGIFVGQAW--SGVP----WFEAGAQPGAVAPFSFGTLLGTQLLLMGWVESKRWVDFFSP 159
Query: 168 GSQTKE----GSFFGLEAALEGLEPGYPGGPLLNPLGLA---------KDIRNAREWKLK 214
SQ+ E S A E GYPGG +PLGL D KL
Sbjct: 160 DSQSVEWATPWSRTADNFANATGEQGYPGGKFFDPLGLGGITQDGVYIPDADKLERLKLA 219
Query: 215 EIKNGLICLV 224
EIK+ + ++
Sbjct: 220 EIKHARVAML 229
>gi|225447745|ref|XP_002263201.1| PREDICTED: chlorophyll a-b binding protein CP24 10A, chloroplastic
[Vitis vinifera]
gi|147804704|emb|CAN71620.1| hypothetical protein VITISV_015544 [Vitis vinifera]
Length = 257
Score = 106 bits (264), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 83/196 (42%), Positives = 107/196 (54%), Gaps = 27/196 (13%)
Query: 50 VVRAQQRPTWLPGVDP------PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHAR 103
VV A + +WLPGV P +LDG+L GD+GFDPLGLG+DP L+WY +AEL+H R
Sbjct: 47 VVAAAPKKSWLPGVKAGGNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGR 106
Query: 104 FAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFA--STRTLFIVQLLLMGFAETKRY 161
+AMA V GI +GI W+EAGA A S TL QLLLMG+ E+KR+
Sbjct: 107 WAMAAVVGIFVGQAW--SGIP----WFEAGAAPGAVAPFSFGTLLGTQLLLMGWVESKRW 160
Query: 162 MDYISPGSQTKE----GSFFGLEAALEGLEPGYPGGPLLNPLGLA---------KDIRNA 208
+D+ +P SQ+ E S A E GYPGG +PL LA D+
Sbjct: 161 VDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLSLAGTIKDGVYIPDVEKL 220
Query: 209 REWKLKEIKNGLICLV 224
KL EIK+ I ++
Sbjct: 221 ERLKLAEIKHARIAML 236
>gi|145346713|ref|XP_001417828.1| chlorophyll a/b binding, possibly photosystem I light harvesting
complex [Ostreococcus lucimarinus CCE9901]
gi|144578056|gb|ABO96121.1| chlorophyll a/b binding, possibly photosystem I light harvesting
complex [Ostreococcus lucimarinus CCE9901]
Length = 185
Score = 106 bits (264), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 68/168 (40%), Positives = 98/168 (58%), Gaps = 30/168 (17%)
Query: 59 WLPG-VDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDL 117
WLP P +LDGT+AGD+GFDPLGLG DP L++Y +AEL++AR+AM VAGI+ T+
Sbjct: 2 WLPAPYKAPAHLDGTVAGDYGFDPLGLGSDPTRLKYYQEAELMNARWAMMAVAGIVGTE- 60
Query: 118 LRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFF 177
+ GI P W+EAG ++ F + L VQL +MG+ E KR +++ GS
Sbjct: 61 --IAGIE--PRWWEAGTEDYGF-PPQALLAVQLPVMGYLENKRIQGWLATGSS------- 108
Query: 178 GLEAALEGLEPGYPGGPLLNPLGL-AKDIRNAREWKLKEIKNGLICLV 224
G+ +P +P+G+ +KD + KLKEIKNG ++
Sbjct: 109 -------GVNETFP----FDPMGMGSKD----EKMKLKEIKNGRAAMI 141
>gi|159465641|ref|XP_001691031.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
gi|158279717|gb|EDP05477.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
Length = 246
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 66/186 (35%), Positives = 100/186 (53%), Gaps = 31/186 (16%)
Query: 40 SGTTRRYLATV-VRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAE 98
+G +R ATV V A RP W PG P +LDG++ GD+GFDPL LG + ++L+W+ +AE
Sbjct: 11 AGVSRPSRATVRVSASTRPMWYPGATAPAHLDGSMLGDYGFDPLRLGVNKDNLKWFREAE 70
Query: 99 LVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAET 158
L + R+AMA V GILFTD + LP ++ AGA ++ +TL ++++ + E
Sbjct: 71 LTNGRWAMAAVVGILFTDAV------GLPKFWTAGAEKYAL-DNQTLALIEVAVFAVLEG 123
Query: 159 KRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKN 218
KRY Y G E G+ +P+G+ + E KLKE+KN
Sbjct: 124 KRYEIYKKTG------------------ETGFLSFAPFDPMGM-----KSEEMKLKELKN 160
Query: 219 GLICLV 224
G + ++
Sbjct: 161 GRLAML 166
>gi|167966192|gb|ACA13177.1| chloroplast a/b binding protein cab-PhE11 [Phyllostachys edulis]
Length = 252
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 77/190 (40%), Positives = 103/190 (54%), Gaps = 27/190 (14%)
Query: 56 RPTWLPGVDP------PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGV 109
+ +W+P V PP+LDG+L GD+GFDPLGLG+DP L+WY +AEL+H R+AM+ V
Sbjct: 48 KKSWVPAVKSDAEFINPPWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMSAV 107
Query: 110 AGILFTDLLRVTGIRELPVWYEAGAVEFKFA--STRTLFIVQLLLMGFAETKRYMDYISP 167
GI +G+ W+EAGA A S TL QLLLMG+ E+KR++D+ SP
Sbjct: 108 LGIFVGRAW--SGVP----WFEAGAQPGAVAPFSFGTLLGTQLLLMGWVESKRWVDFFSP 161
Query: 168 GSQTKE----GSFFGLEAALEGLEPGYPGGPLLNPLGLA---------KDIRNAREWKLK 214
SQ+ E S A E GYPGG +PLGL D KL
Sbjct: 162 DSQSVEWATPWSRTADNFANATGEQGYPGGKFFDPLGLGGITQDGVYIPDADKLERLKLA 221
Query: 215 EIKNGLICLV 224
EIK+ + ++
Sbjct: 222 EIKHARVAML 231
>gi|307106432|gb|EFN54678.1| hypothetical protein CHLNCDRAFT_31627 [Chlorella variabilis]
Length = 246
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 72/179 (40%), Positives = 98/179 (54%), Gaps = 32/179 (17%)
Query: 48 ATVVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLG-EDPESLRWYVQAELVHARFAM 106
++VV A RPTW PG PP +LDG++ GD+GFDPL LG +D + L++Y + EL + R+AM
Sbjct: 24 SSVVVAAARPTWYPGATPPKHLDGSMLGDYGFDPLRLGSKDKDVLKYYREGELTNGRWAM 83
Query: 107 AGVAGILFTDLLRVTGIRELPVWYEAGA-VEFKFASTRTLFIVQLLLMGFAETKRYMDYI 165
A VAGILFTDL+ L W+EAGA VE F +TL IV+++ E R Y
Sbjct: 84 AAVAGILFTDLV------GLGPWWEAGAKVESSF-DLKTLIIVEIVTFAILEGFRAKAYE 136
Query: 166 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
G GL P P +PL + D E +LKE+KNG + ++
Sbjct: 137 KTGET--------------GLGPFAP----FDPLNMRSD-----ETRLKELKNGRLAML 172
>gi|157965841|gb|ABW06957.1| chloroplast light-harvesting complex II protein precursor [Euglena
gracilis]
Length = 562
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 69/201 (34%), Positives = 95/201 (47%), Gaps = 31/201 (15%)
Query: 37 PAKSGTTRRYLATVVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQ 96
PA + ++RPTW PG + P +L G GD GFDPLGL +DPE
Sbjct: 341 PAHNNLLNTVAMFAASGEKRPTWFPGAEAPAWLTGEYPGDRGFDPLGLAKDPEDFAKNRD 400
Query: 97 AELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVE-------------FKFASTR 143
+E+ H R+AM G+ G L ++ GI +LP WYEAGAV ++
Sbjct: 401 SEVYHGRWAMLGLVGCLVPEVFGNLGIAQLPAWYEAGAVANTGSLDYLGNPNLVHASNVP 460
Query: 144 TLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAK 203
+F LLL E R+ I+P +++ E + YPGGP +PL L
Sbjct: 461 LIFFTTLLLFLPIEAWRWNGQIAPEAKSAERT-------------TYPGGP-FDPLKLGA 506
Query: 204 DIRNAREWKLKEIKNGLICLV 224
+ E KLKEIKNG + +V
Sbjct: 507 ----SPELKLKEIKNGRLAMV 523
Score = 97.1 bits (240), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 63/201 (31%), Positives = 93/201 (46%), Gaps = 31/201 (15%)
Query: 37 PAKSGTTRRYLATVVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQ 96
PA + ++RPTW PG + P +L G GD GFDP GL +DP +
Sbjct: 132 PAHNNLLNTVAMFAASGEKRPTWFPGAEAPTWLTGEYPGDRGFDPFGLAKDPADFAKFRD 191
Query: 97 AELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVE-------------FKFASTR 143
+E+ H R+AM G+ G L ++ GI +LP WY+A V ++
Sbjct: 192 SEVFHGRWAMLGLVGCLVPEVFGNLGIAQLPAWYDAATVANTSNLDYLGNPNLVHASNVS 251
Query: 144 TLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAK 203
+ + LLLMG E R+ ++ +++ E + YPGGP +PL L
Sbjct: 252 FIALSTLLLMGPVEAWRWNGALASEAKSAERT-------------TYPGGP-FDPLKLGA 297
Query: 204 DIRNAREWKLKEIKNGLICLV 224
+ E KLKEIKNG + +V
Sbjct: 298 ----SPELKLKEIKNGRLAMV 314
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 53/116 (45%), Gaps = 31/116 (26%)
Query: 122 GIRELPVWYEAGAVE-------------FKFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
GI +LP WYEAGAV ++ +F LLL E R+ I+P
Sbjct: 8 GIAQLPAWYEAGAVANTGSLDYLGNPNLVHASNVPLIFFTTLLLFLPIEAWRWNGQIAPD 67
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
+++KE + YPGGP +PL L + E KLKEIKNG + +V
Sbjct: 68 AKSKEWT-------------TYPGGP-FDPLKLGA----SPELKLKEIKNGRLAMV 105
>gi|427338377|gb|AFY52187.1| chlorophyll binding protein, partial [Clermontia fauriei]
gi|427338379|gb|AFY52188.1| chlorophyll binding protein, partial [Clermontia fauriei]
gi|427338381|gb|AFY52189.1| chlorophyll binding protein, partial [Clermontia fauriei]
gi|428230862|gb|AFY99053.1| chlorophyll binding protein, partial [Clermontia fauriei]
Length = 197
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 65/163 (39%), Positives = 89/163 (54%), Gaps = 19/163 (11%)
Query: 78 GFDPLGLGEDPESL------RWYVQAELVHARFAMAGVAGILFTDLLRVTGI----RELP 127
GFDPLGL DPE +W E+ + RFAM G G + ++ G+ LP
Sbjct: 1 GFDPLGL-SDPEGTGGFIEPKWLAYGEVFNGRFAMLGAVGAIAPEIFGKLGLIPAETALP 59
Query: 128 VWYEAGAVE-----FKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAA 182
W++ G + +A TLF+ ++ LMGFAE +R D+ +PGS K+ F GLE
Sbjct: 60 -WFQTGVIPPAGSYTYWADPYTLFVFEMALMGFAEHRRLQDWYNPGSMGKQ-YFLGLEKG 117
Query: 183 LEGL-EPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
G +P YPGGP NPLG KD + +E KLKEIKNG + ++
Sbjct: 118 FAGSGDPAYPGGPFFNPLGFGKDETSMKELKLKEIKNGRLAML 160
>gi|149242543|pdb|2O01|4 Chain 4, The Structure Of A Plant Photosystem I Supercomplex At 3.4
Angstrom Resolution
Length = 165
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 59/137 (43%), Positives = 86/137 (62%), Gaps = 8/137 (5%)
Query: 88 PESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFI 147
PE+LRW+VQAELV+ R+AM GVAG+L ++ GI +P WY AG E+ FAS+ TLF+
Sbjct: 1 PENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGIINVPKWYAAGKEEY-FASSSTLFV 59
Query: 148 VQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRN 207
++ +L + E +R+ D +PGS ++ F + +L E GYPGG + NPL A +
Sbjct: 60 IEFILSHYVEIRRWQDIKNPGSVNQDPIF--KQYSLPAGEVGYPGG-IFNPLNFAPTL-- 114
Query: 208 AREWKLKEIKNGLICLV 224
E K KEI NG + ++
Sbjct: 115 --EAKEKEIANGRLAML 129
>gi|308813724|ref|XP_003084168.1| PSI-associated light-harvesting chlorophyll a/b binding protein,
(IC) [Ostreococcus tauri]
gi|63029295|gb|AAY27546.1| chloroplast light-harvesting complex I protein precursor Lhca3
[Ostreococcus tauri]
gi|116056051|emb|CAL58584.1| PSI-associated light-harvesting chlorophyll a/b binding protein,
(IC) [Ostreococcus tauri]
Length = 272
Score = 104 bits (260), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 71/176 (40%), Positives = 100/176 (56%), Gaps = 24/176 (13%)
Query: 68 YLDGTLAGDFGFDPLGLGEDPESL------RWYVQAELVHARFAMAGVAGILFTDLLRVT 121
YLDG+L GD+GFDPLGL DPE +W +EL+H R+AM GVAG++ ++L
Sbjct: 61 YLDGSLPGDYGFDPLGL-SDPEGAGGFVNPKWLAYSELIHGRWAMLGVAGMVAPEVLGGM 119
Query: 122 GIRELP-----VWYEAGAVEFK-----FASTRTLFIVQLLLMGFAETKRYMDYISPGSQT 171
GI +P VW++AG + + +AS T+F + LM AE +R DY +PGS
Sbjct: 120 GI--IPQETGLVWFKAGMIPAQGTYDYWASPFTIFWINAFLMNIAELRRAQDYWNPGSMG 177
Query: 172 KEGSFFGLEAALEGL-EPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICLVLC 226
K+ F GLE L G +P YPGG N + + ++ K KEIKNG + ++ C
Sbjct: 178 KQ-DFAGLEKMLGGSGDPAYPGG-FFNFMKQGE--KDMAAMKTKEIKNGRLAMMAC 229
>gi|145079840|tpg|DAA05941.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca2 [Micromonas sp. CCMP490]
Length = 245
Score = 104 bits (259), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 65/175 (37%), Positives = 95/175 (54%), Gaps = 30/175 (17%)
Query: 51 VRAQQRPT-WLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGV 109
V+A P WLPG +PP YLDGT+AGD+GFDPL LG++ E+L + +AEL++ R+AM
Sbjct: 26 VKAAAGPQHWLPGSEPPAYLDGTMAGDYGFDPLRLGQNAETLPYLQEAELMNGRWAMHAT 85
Query: 110 AGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGS 169
AGILFTD + LP ++EAG +TL +Q+++MGF E R + + G
Sbjct: 86 AGILFTDAVG------LPKFWEAGDAALGDWDLKTLVAIQVVVMGFLEAARIRGFYATGE 139
Query: 170 QTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
G+F P P G +++ K+KEIKNG + ++
Sbjct: 140 SGVVGNF-----------PFDPSG------------QDSPAMKVKEIKNGRLAMM 171
>gi|302830496|ref|XP_002946814.1| hypothetical protein VOLCADRAFT_45832 [Volvox carteri f.
nagariensis]
gi|300267858|gb|EFJ52040.1| hypothetical protein VOLCADRAFT_45832 [Volvox carteri f.
nagariensis]
Length = 227
Score = 104 bits (259), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 73/191 (38%), Positives = 99/191 (51%), Gaps = 30/191 (15%)
Query: 60 LPGVDPPPYLDGTLAGDFGFDPLGLGEDPE--------SLRWYVQAELVHARFAMAGVAG 111
+P YLDGTL GDFGFDPLGL DP S RW AEL+HAR+AM G AG
Sbjct: 5 MPTASSLSYLDGTLPGDFGFDPLGL-FDPSSGGSAGFLSQRWLHTAELMHARWAMLGAAG 63
Query: 112 ILFTDLL-------RVTGIRELPVWYEAG-----AVEFKFA-STRTLFIVQLLLMGFAET 158
L + L + TG+ +W++ G + F + LF VQ+++MG AE
Sbjct: 64 CLAPEYLAHEKVIPKATGL----LWFKTGFLPQASAGFDYGLPLGVLFAVQMVMMGVAEG 119
Query: 159 KRYMDYISPGSQTKEGSFFGLEAALEGLEPG---YPGGPLLNPLGLAKDIRNAREWKLKE 215
R +YI+PGS + GLE + G YPGG + NPLGL + RE + E
Sbjct: 120 LRGAEYIAPGS-LRNNKLLGLEKLIATTRAGSAAYPGGLMFNPLGLGEKPAAMREMQQAE 178
Query: 216 IKNGLICLVLC 226
I++G + ++ C
Sbjct: 179 IRHGRLAMLAC 189
Score = 38.5 bits (88), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 22/37 (59%)
Query: 75 GDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAG 111
G F+PLGLGE P ++R QAE+ H R AM G
Sbjct: 155 GGLMFNPLGLGEKPAAMREMQQAEIRHGRLAMLACLG 191
>gi|159475641|ref|XP_001695927.1| minor chlorophyll a-b binding protein of photosystem II
[Chlamydomonas reinhardtii]
gi|12060444|dbj|BAB20613.1| CP26 [Chlamydomonas reinhardtii]
gi|158275487|gb|EDP01264.1| minor chlorophyll a-b binding protein of photosystem II
[Chlamydomonas reinhardtii]
Length = 289
Score = 103 bits (258), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 71/177 (40%), Positives = 94/177 (53%), Gaps = 22/177 (12%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR- 124
P YL+G LAGD+G+DPLGLG+DPE++ Y + EL+HAR+AM AGIL + L+ G
Sbjct: 72 PEYLNGELAGDYGYDPLGLGKDPETVAKYRENELLHARWAMLAAAGILIPEGLQANGANI 131
Query: 125 ELPVWYEAGAVEFKFASTRTLF-----------------IVQLLLMGFAETKRYMDYISP 167
+ W+E GA E T F V++ LMG E R
Sbjct: 132 KGGTWFETGA-EMLNGGTLNYFAVPWGIVSNPLPLFAVIAVEVGLMGAVEFYRRNGTGPA 190
Query: 168 GSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
G G F + +GL+P YPGGP +PLGLA D +E K+KEIKNG + +V
Sbjct: 191 GYSPGIGKFD--SSVFDGLDPLYPGGP-FDPLGLADDPEVLQELKVKEIKNGRLAMV 244
>gi|303280461|ref|XP_003059523.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas pusilla CCMP1545]
gi|226459359|gb|EEH56655.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas pusilla CCMP1545]
Length = 235
Score = 103 bits (258), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 69/196 (35%), Positives = 102/196 (52%), Gaps = 31/196 (15%)
Query: 30 GITSAFLPAKSGTTRRYLATVVRAQQRPTWLP-GVDPPPYLDGTLAGDFGFDPLGLGEDP 88
G +AF+ A + + V+AQ R W+ P +LDGTL GDFGFDPLGLG DP
Sbjct: 24 GSRAAFVAAPAMKVSSRASLTVKAQ-RELWIKDSTVAPAHLDGTLPGDFGFDPLGLGADP 82
Query: 89 ESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIV 148
+ L++Y +AEL++AR+AM VAGI T++L + P WY+ GA +F F L +
Sbjct: 83 QRLKYYQEAELMNARWAMMAVAGITATEVLGIG-----PAWYDVGAADFDFPPL-ALLAI 136
Query: 149 QLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNA 208
Q +MG E KR ++ G G+ +P +P+G+ N+
Sbjct: 137 QFPVMGILELKRIRGWLDTGK--------------SGVVDQFP----WDPMGM-----NS 173
Query: 209 REWKLKEIKNGLICLV 224
+KEIKNG + ++
Sbjct: 174 DGMAVKEIKNGRLAMI 189
>gi|449452104|ref|XP_004143800.1| PREDICTED: chlorophyll a-b binding protein 6A, chloroplastic-like
[Cucumis sativus]
gi|449525097|ref|XP_004169556.1| PREDICTED: chlorophyll a-b binding protein 6A, chloroplastic-like
[Cucumis sativus]
Length = 246
Score = 103 bits (257), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 70/215 (32%), Positives = 105/215 (48%), Gaps = 38/215 (17%)
Query: 28 SIGITSAFLPAKSGTTRRYLAT-------VVRAQQR----PTWLPGVDPPPYLDGTLAGD 76
S GI + P+ +++ A V A R W+PG PPYLDG+ GD
Sbjct: 8 SCGIATTAFPSVLSSSKSKFAVGVPISGVAVNASSRFSMSAEWMPGQPRPPYLDGSAPGD 67
Query: 77 FGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVW--YEAGA 134
FGFDPLGLGE PE+L + ++EL+H R+AM V GIL + L + + W G
Sbjct: 68 FGFDPLGLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEWAAVPGGQ 127
Query: 135 VEF-----KFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPG 189
+ + + T+ +++ L + F E +R M+ + K+
Sbjct: 128 ATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEK---DPEKKK---------------- 168
Query: 190 YPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
YPGG +PLG +KD +E+K+KEIKNG + L+
Sbjct: 169 YPGG-AFDPLGYSKDPEKLKEYKVKEIKNGRLALL 202
>gi|224100797|ref|XP_002312019.1| light-harvesting complex I protein Lhca1 [Populus trichocarpa]
gi|222851839|gb|EEE89386.1| light-harvesting complex I protein Lhca1 [Populus trichocarpa]
Length = 244
Score = 103 bits (257), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 67/196 (34%), Positives = 100/196 (51%), Gaps = 35/196 (17%)
Query: 36 LPAKSGTTRRYLATVVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYV 95
LP+ +GT+R ++ WLPG PPYLDG+ GDFGFDPL LGE PE+L Y
Sbjct: 33 LPSVNGTSRVTMSA--------DWLPGQPRPPYLDGSAPGDFGFDPLRLGEVPENLERYK 84
Query: 96 QAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKF-------ASTRTLFIV 148
++EL+H R+AM V GIL + L + + W A + + + T+ +
Sbjct: 85 ESELIHCRWAMLAVPGILIPEALGLGNWVKAQEWAAAPGGQATYLGQPVPWGTLPTVLAI 144
Query: 149 QLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNA 208
+ + + F E +R M+ + K+ YPGG +PLG +KD +
Sbjct: 145 EFVAIAFVEHQRSMEK---DPEKKK----------------YPGG-AFDPLGFSKDPKKF 184
Query: 209 REWKLKEIKNGLICLV 224
E+K+KEIKNG + L+
Sbjct: 185 EEYKVKEIKNGRLALL 200
>gi|384246844|gb|EIE20333.1| light-harvesting chlorophyll a/b-binding protein Lhca2 [Coccomyxa
subellipsoidea C-169]
Length = 246
Score = 103 bits (257), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 66/175 (37%), Positives = 101/175 (57%), Gaps = 22/175 (12%)
Query: 68 YLDGTLAGDFGFDPLGLGEDPE-------SLRWYVQAELVHARFAMAGVAGILFTDLLRV 120
YL G L D+GFDPLGL DPE S W +E++HAR+AM G AG + ++L
Sbjct: 35 YLTGALPADYGFDPLGL-LDPEGKGAGFVSPAWLQYSEVIHARWAMLGAAGCIAPEILAT 93
Query: 121 TG-IRELP---VWYEAGAV------EFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQ 170
G I + P +W+++G + + + +LF ++++L+ FAE +R+ D+ +PGSQ
Sbjct: 94 AGVIPQTPDEVIWFKSGVIPPAGVYDKYWLDPYSLFFIEVILVQFAELRRWQDFRNPGSQ 153
Query: 171 TKEGSFFGLEAALEGL-EPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
K+ F GLE L+G +P YPGG N L K + +E K KE+KNG + ++
Sbjct: 154 GKQ-YFLGLEEVLKGSGDPSYPGGQFFNLFNLGK--SDLKELKTKELKNGRLAML 205
>gi|87313239|gb|ABD37916.1| light-harvesting chlorophyll-a/b binding protein Lhcb5
[Chlamydomonas incerta]
Length = 259
Score = 103 bits (256), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 71/177 (40%), Positives = 94/177 (53%), Gaps = 22/177 (12%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR- 124
P YL+G LAGD+G+DPLGLG+DPE++ Y + EL+HAR+AM AGIL + L+ G
Sbjct: 42 PDYLNGELAGDYGYDPLGLGKDPETVAKYRENELLHARWAMLAAAGILIPEGLQANGANI 101
Query: 125 ELPVWYEAGAVEFKFASTRTLF-----------------IVQLLLMGFAETKRYMDYISP 167
+ W+E GA E T F V++ LMG E R
Sbjct: 102 KGGTWFETGA-EMLNGGTLNYFAVPWGIVSNPLPLFAVIAVEVGLMGAVEFYRRNGSGPA 160
Query: 168 GSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
G G F + +GL+P YPGGP +PLGLA D +E K+KEIKNG + +V
Sbjct: 161 GYSPGIGKFD--SSVFDGLDPLYPGGP-FDPLGLADDPEVLQELKVKEIKNGRLAMV 214
>gi|303272113|ref|XP_003055418.1| chlorophyll a/b-binding protein, chloroplast precursor [Micromonas
pusilla CCMP1545]
gi|226463392|gb|EEH60670.1| chlorophyll a/b-binding protein, chloroplast precursor [Micromonas
pusilla CCMP1545]
Length = 254
Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 60/166 (36%), Positives = 90/166 (54%), Gaps = 29/166 (17%)
Query: 59 WLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLL 118
WLPG +PP YLDGT+ D+GFDPL LG +PE+L + +AEL++ R+AM AGILFTD +
Sbjct: 44 WLPGTEPPSYLDGTMPADYGFDPLRLGANPETLPYLQEAELMNGRWAMHATAGILFTDAV 103
Query: 119 RVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFG 178
LP ++EAG +TL +Q+++MGF E R +++ G G+F
Sbjct: 104 G------LPKFWEAGEAALGDWDLKTLVAIQVVVMGFLEAARIRGFMATGESGVVGNF-- 155
Query: 179 LEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
P P G +++ K+KE+KNG + ++
Sbjct: 156 ---------PFDPTG------------QDSPAMKVKEVKNGRLAMM 180
>gi|308804351|ref|XP_003079488.1| PSI-associated light-harvesting chlorophyll a/b binding protein
(IC) [Ostreococcus tauri]
gi|63029297|gb|AAY27547.1| chloroplast light-harvesting complex I protein precursor Lhca5
[Ostreococcus tauri]
gi|116057943|emb|CAL54146.1| PSI-associated light-harvesting chlorophyll a/b binding protein
(IC) [Ostreococcus tauri]
Length = 212
Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 61/159 (38%), Positives = 91/159 (57%), Gaps = 27/159 (16%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRE 125
P +LDG++AGD+GFDPLGLG +P+ L++Y +AEL++AR+AM VAGI+ T+ V GI
Sbjct: 37 PAHLDGSIAGDYGFDPLGLGTNPDRLKYYQEAELMNARWAMMAVAGIVGTE---VAGIE- 92
Query: 126 LPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEG 185
P W+EAG ++ F L +Q +MG+ E KR +++ GS G
Sbjct: 93 -PRWWEAGTEDYGFPPA-ALLAIQFPVMGYLENKRIQGWMATGSS--------------G 136
Query: 186 LEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
+ +P +P+G+ N KLKEIKNG ++
Sbjct: 137 VNETFP----FDPMGMGSKDANM---KLKEIKNGRAAMI 168
>gi|424512849|emb|CCO66433.1| predicted protein [Bathycoccus prasinos]
Length = 286
Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 67/170 (39%), Positives = 94/170 (55%), Gaps = 18/170 (10%)
Query: 68 YLDGTLAGDFGFDPLGLGEDPESL------RWYVQAELVHARFAMAGVAGILFTDLLR-V 120
YLDGTL GD+GFDPLGL DPE W AE++H R+AM GVAG + ++
Sbjct: 77 YLDGTLPGDYGFDPLGL-SDPEGAGGFINPGWLAYAEVIHGRWAMLGVAGATAPETMKGF 135
Query: 121 TGIRELPVWYEAGAVEFK-----FASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGS 175
VW++ G + + +A LF V + +M F E R +Y +PG +TK+ S
Sbjct: 136 IPDSTAVVWFKNGIIPAQGSYDFWAPPTALFWVMVCMMNFVEINRLTEYANPGFRTKQ-S 194
Query: 176 FFGLEAALEGL-EPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
GLE + G P YPGG NP+G+ K+ +A K+KEIKNG + ++
Sbjct: 195 LAGLEKGMGGTGNPAYPGGS-FNPMGMGKNDMDAM--KVKEIKNGRLAMM 241
>gi|384253873|gb|EIE27347.1| chlorophyll a/b-binding protein [Coccomyxa subellipsoidea C-169]
Length = 330
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 73/193 (37%), Positives = 99/193 (51%), Gaps = 27/193 (13%)
Query: 55 QRPTWLPG--VDP---PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGV 109
R +LPG +DP P YL+GTLAGD+G+DPLGLG+D ++ Y EL+HAR+AM
Sbjct: 97 SRALFLPGGLLDPSDVPTYLNGTLAGDYGYDPLGLGKDTATVEKYRAYELIHARWAMLAA 156
Query: 110 AGILFTDLLRVTGIR-ELPVWYEAGAVEFKFASTRTLF-----------------IVQLL 151
AGI+ + L+ G + W+E GA E T F ++++
Sbjct: 157 AGIIIPEGLQANGAAIKGGTWFETGA-EMLNGGTLNYFAVPWGIINNPLPLFLVVVIEVA 215
Query: 152 LMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREW 211
L+G E R PG G F + GL+ YPGGP +PLGLA D E
Sbjct: 216 LLGAVERYRQSGEGPPGYSPGVGKFD--SSIFSGLDNLYPGGP-FDPLGLADDPETFAEL 272
Query: 212 KLKEIKNGLICLV 224
K+KEIKNG + L+
Sbjct: 273 KVKEIKNGRLALI 285
>gi|302854202|ref|XP_002958611.1| light-harvesting protein of photosystem I [Volvox carteri f.
nagariensis]
gi|300256072|gb|EFJ40348.1| light-harvesting protein of photosystem I [Volvox carteri f.
nagariensis]
Length = 228
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 73/207 (35%), Positives = 97/207 (46%), Gaps = 34/207 (16%)
Query: 28 SIGITSAFLPAKSGTTRRYLATVVRA----QQRPTWLPGVDPPPYLDGTLAGDFGFDPLG 83
S+ SA A G R +A V + WLPG D P +L L G++GFDPL
Sbjct: 4 SMRTVSAKTAAPRGFAGRRVAAVSNGCRVVMKAGNWLPGSDAPAWLPDDLPGNYGFDPLS 63
Query: 84 LGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAG------AVEF 137
LG+DP SL+ + ++E++H R+AM GVAG L +LL + P+W G +E
Sbjct: 64 LGKDPASLKRFTESEVIHGRWAMLGVAGALAVELLGYGNWYDAPLWAVTGGKATWFGIEV 123
Query: 138 KFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLN 197
F TL + + M AE G + G YPGG +
Sbjct: 124 PF-DLNTLLAFEFVAMAAAE----------GQRNDAGGVI------------YPGGA-FD 159
Query: 198 PLGLAKDIRNAREWKLKEIKNGLICLV 224
PLG AKD A E KLKEIKNG + +V
Sbjct: 160 PLGFAKDSSKAGELKLKEIKNGRLAMV 186
>gi|384247026|gb|EIE20514.1| light harvesting complex protein I-20 [Coccomyxa subellipsoidea
C-169]
Length = 229
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 64/172 (37%), Positives = 91/172 (52%), Gaps = 26/172 (15%)
Query: 58 TWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDL 117
WLPG D P YLDG L G FGFDP GLG P +L+ + +AELVH+R+AMAGVAG L +L
Sbjct: 36 NWLPGSDTPAYLDG-LPGSFGFDPFGLGSTPANLQRFQEAELVHSRWAMAGVAGALGAEL 94
Query: 118 LRVTGIRELPVWYEAGAVEFKFA-----STRTLFIVQLLLMGFAETKRYMDYISPGSQTK 172
L + P+W G + TL ++ + + AE +R + P ++ +
Sbjct: 95 LGQGDWYQAPLWAVNGGAPTYLGIPVPFNLSTLLAIEFVAIAGAEAQRNAE---PDAEKR 151
Query: 173 EGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
+ YPGG +PLG +KD + E KLKE+KNG + ++
Sbjct: 152 K----------------YPGG-AFDPLGFSKDSKVLEENKLKELKNGRLAML 186
>gi|149242542|pdb|2O01|3 Chain 3, The Structure Of A Plant Photosystem I Supercomplex At 3.4
Angstrom Resolution
Length = 165
Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 57/142 (40%), Positives = 83/142 (58%), Gaps = 12/142 (8%)
Query: 93 WYVQAELVHARFAMAGVAGILFTDLLRVTGI----RELPVWYEAGAVE-----FKFASTR 143
W E+++ RFAM G AG + ++L G+ LP W++ G + +A
Sbjct: 1 WLAYGEIINGRFAMLGAAGAIAPEILGKAGLIPAETALP-WFQTGVIPPAGTYTYWADNY 59
Query: 144 TLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGL-EPGYPGGPLLNPLGLA 202
TLF++++ LMGFAE +R D+ +PGS K+ F GLE L G P YPGGP NPLG
Sbjct: 60 TLFVLEMALMGFAEHRRLQDWYNPGSMGKQ-YFLGLEKGLAGSGNPAYPGGPFFNPLGFG 118
Query: 203 KDIRNAREWKLKEIKNGLICLV 224
KD ++ +E KLKE+KNG + ++
Sbjct: 119 KDEKSLKELKLKEVKNGRLAML 140
>gi|303324980|pdb|3LW5|3 Chain 3, Improved Model Of Plant Photosystem I
Length = 172
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 59/154 (38%), Positives = 84/154 (54%), Gaps = 11/154 (7%)
Query: 80 DPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI---RELPVWYEAGAVE 136
DP G G E RW E+++ RFAM G G + + L G+ W++ G +
Sbjct: 2 DPEGTGGFIEP-RWLAYGEVINGRFAMLGAVGAIAPEYLGKVGLIPQETALAWFQTGVIP 60
Query: 137 -----FKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGL-EPGY 190
+A TLF++++ LMGFAE +R+ D+ PGS K+ F GLE G P Y
Sbjct: 61 PAGTYNYWADNYTLFVLEMALMGFAEHRRFQDWAKPGSMGKQ-YFLGLEKGFGGSGNPAY 119
Query: 191 PGGPLLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
PGGP NPLG KD ++ +E KLKE+KNG + ++
Sbjct: 120 PGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAML 153
>gi|62199619|gb|AAX76906.1| chloroplast Tidi [Dunaliella salina]
Length = 350
Score = 100 bits (248), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 68/188 (36%), Positives = 100/188 (53%), Gaps = 34/188 (18%)
Query: 68 YLDGTLAGDFGFDPLGLGEDPE--------SLRWYVQAELVHARFAMAGVAGILFTDLLR 119
YL G+L GDFG+DPL L + + S+ W AE++H R+AM G AG L ++L
Sbjct: 128 YLTGSLPGDFGWDPLHLADTNDQDRLNNAMSMEWLSYAEVIHGRWAMLGAAGALSPEVLG 187
Query: 120 VTGIRELP-----VWYEAGAVE---------------FKFASTR-TLFIVQLLLMGFAET 158
G+ +P W++AG ++ F++ + + TL L+ MGFAET
Sbjct: 188 KAGV--IPKETGLTWFQAGGLDSSSNLIAVPFTGPIPFQYWTDQYTLLFTMLVAMGFAET 245
Query: 159 KRYMDYISPGSQTKEGSFFGLEA-ALEGLEPGYPGGPLLNPLGL-AKDIRNAREWKLKEI 216
+R+ +Y PGS K+ F GLE +P YPGG N GL AKD + E K+KEI
Sbjct: 246 RRWQEYKEPGSVQKQ-FFLGLEKLTPPSQQPAYPGGGFFNFAGLGAKDEKQMFELKVKEI 304
Query: 217 KNGLICLV 224
+NG + ++
Sbjct: 305 RNGRLAML 312
>gi|18254|emb|CAA49209.1| a/b binding protein [Pyrobotrys stellata]
Length = 254
Score = 100 bits (248), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 71/189 (37%), Positives = 97/189 (51%), Gaps = 37/189 (19%)
Query: 55 QRPTWLPGV--DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGI 112
RP +L G+ +PP YL+G GD+G+D GL DPE+ + Y Q EL+HAR+A+ G G
Sbjct: 44 NRPLFLGGLSGEPPAYLNGEFPGDYGWDTAGLSADPETFKRYRQLELIHARWALLGALGC 103
Query: 113 LFTDLLRVTGIRELP---VWYEAGAVEFKFASTRTL--------------FIVQLLLMGF 155
+ +LL G+ +P VW++ GA FK L +VQL+LMG+
Sbjct: 104 VVPELLARNGV-AMPADGVWFKVGAEIFKEGGLNYLGNENLVHAQSIVATLLVQLVLMGW 162
Query: 156 AETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKE 215
AE R G G EGL+P YPGG +PLGLA D E K+KE
Sbjct: 163 AEGYRI-----------NGGPLG-----EGLDPLYPGGA-FDPLGLADDPDTLAELKVKE 205
Query: 216 IKNGLICLV 224
+KNG + +
Sbjct: 206 LKNGRMAMA 214
>gi|224109746|ref|XP_002315298.1| light-harvesting complex I protein Lhca1 [Populus trichocarpa]
gi|118489209|gb|ABK96411.1| unknown [Populus trichocarpa x Populus deltoides]
gi|222864338|gb|EEF01469.1| light-harvesting complex I protein Lhca1 [Populus trichocarpa]
Length = 243
Score = 100 bits (248), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 64/196 (32%), Positives = 99/196 (50%), Gaps = 35/196 (17%)
Query: 36 LPAKSGTTRRYLATVVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYV 95
LP+ +GT+R ++ W+PG PPYLDG+ GDFGFDPL LGE PE+L Y
Sbjct: 32 LPSVNGTSRVTMSA--------NWMPGQPRPPYLDGSAPGDFGFDPLRLGEVPENLERYK 83
Query: 96 QAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKF-------ASTRTLFIV 148
++EL+H R+AM V GIL + L + + W + + + + +
Sbjct: 84 ESELIHCRWAMLAVPGILVPEALGLGNWVKAQEWAATPGGQATYLGQPVPWGTLPIILAI 143
Query: 149 QLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNA 208
+ + + F E +R M+ ++ K+ YPGG +PLG +KD +
Sbjct: 144 EFVAIAFVEHQRSMEK---DTEKKK----------------YPGG-AFDPLGYSKDPQKF 183
Query: 209 REWKLKEIKNGLICLV 224
E+K+KEIKNG + L+
Sbjct: 184 EEYKVKEIKNGRLALL 199
>gi|302835678|ref|XP_002949400.1| hypothetical protein VOLCADRAFT_104309 [Volvox carteri f.
nagariensis]
gi|300265227|gb|EFJ49419.1| hypothetical protein VOLCADRAFT_104309 [Volvox carteri f.
nagariensis]
Length = 286
Score = 99.8 bits (247), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 71/177 (40%), Positives = 93/177 (52%), Gaps = 22/177 (12%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR- 124
P YL+G LAGD+G+DPLGLG+D E++ Y + EL+HAR+AM AGIL + L+ G
Sbjct: 69 PAYLNGELAGDYGYDPLGLGKDTETVAKYREYELLHARWAMLAAAGILIPEGLQANGANI 128
Query: 125 ELPVWYEAGAVEFKFASTRTLFIV-----------------QLLLMGFAETKRYMDYISP 167
+ VW+E GA E T F V ++ LMG E R
Sbjct: 129 KGGVWFETGA-EMLNGGTLNYFAVPWGIVSNPLPLFAVIAIEVGLMGAVEFYRRNGTGPA 187
Query: 168 GSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
G G F + EGL+ YPGGP +PLGLA D +E K+KEIKNG + +V
Sbjct: 188 GYSPGIGKFD--SSVFEGLDSIYPGGP-FDPLGLADDPEVFQELKVKEIKNGRLAMV 241
>gi|356559472|ref|XP_003548023.1| PREDICTED: chlorophyll a-b binding protein 6A, chloroplastic-like
[Glycine max]
Length = 246
Score = 99.8 bits (247), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 63/184 (34%), Positives = 93/184 (50%), Gaps = 27/184 (14%)
Query: 48 ATVVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMA 107
A+ R W+PG PPYLDG+ GDFGFDPL LGE PE+L + ++EL+H R+AM
Sbjct: 39 ASSSRFSMSADWMPGQPRPPYLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAML 98
Query: 108 GVAGILFTDLLRVTGIRELPVW--YEAGAVEF-----KFASTRTLFIVQLLLMGFAETKR 160
V GIL + L + + W G + + + T+ ++ L + F E +R
Sbjct: 99 AVPGILVPEALGLGNWVKAQEWAAVPGGQATYLGNPVPWGTLPTILAIEFLAISFVEHQR 158
Query: 161 YMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGL 220
M+ + K+ YPGG +PLG +KD + E+K+KEIKNG
Sbjct: 159 SMEK---DPEKKK----------------YPGG-AFDPLGYSKDPKTFHEYKVKEIKNGR 198
Query: 221 ICLV 224
+ L+
Sbjct: 199 LALL 202
>gi|255585090|ref|XP_002533251.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223526931|gb|EEF29136.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 244
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 65/196 (33%), Positives = 98/196 (50%), Gaps = 34/196 (17%)
Query: 36 LPAKSGTTRRYLATVVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYV 95
LP +G++ R + W+PG PPYLDG+ GDFGFDPL LGE PE+L +
Sbjct: 32 LPCVNGSSSRITMSA-------DWMPGQPRPPYLDGSAPGDFGFDPLRLGEVPENLERFK 84
Query: 96 QAELVHARFAMAGVAGILFTDLLRVTGIRELPVW--YEAGAVEF-----KFASTRTLFIV 148
++EL+H R+AM V GIL + L + + W G + + + T+ ++
Sbjct: 85 ESELIHCRWAMLAVPGILVPEALGLGNWVKAQEWAAIPGGQATYLGQPVPWGTLPTILVI 144
Query: 149 QLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNA 208
+ L + F E +R M+ + K+ YPGG +PLG +KD
Sbjct: 145 EFLAIAFVEHQRSMEK---DPEKKK----------------YPGG-AFDPLGYSKDPAKF 184
Query: 209 REWKLKEIKNGLICLV 224
E+K+KEIKNG + L+
Sbjct: 185 HEYKVKEIKNGRLALL 200
>gi|308811240|ref|XP_003082928.1| unnamed protein product [Ostreococcus tauri]
gi|63029301|gb|AAY27549.1| chloroplast chlorophyll a/b-binding protein CP26 precursor Lhcb5
[Ostreococcus tauri]
gi|116054806|emb|CAL56883.1| unnamed protein product [Ostreococcus tauri]
Length = 316
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 73/184 (39%), Positives = 103/184 (55%), Gaps = 23/184 (12%)
Query: 55 QRPTWLPG-----VDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGV 109
R +LPG D P YLDGTLAGD+GFDPLGLG D ++ Y AE++HAR+AM V
Sbjct: 97 NRKLYLPGGLLTKADLPSYLDGTLAGDYGFDPLGLGAD-GKVKDYRVAEILHARWAMLAV 155
Query: 110 AGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFI--------VQLLLMGFAETKRY 161
G++ + L + G VW E G V + R + +Q++LMG AE R
Sbjct: 156 PGVVIPEALNIPG----GVWTETGKVFLDGETGRDSILEFWPIYAAIQVVLMGGAEKFR- 210
Query: 162 MDYISP-GSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGL 220
D + P G +G F E+A GL+P PGGP L+ +AK+ ++ + K+KEIKNG
Sbjct: 211 QDGVGPAGFVPFKGKF--EESAFNGLDPVNPGGP-LDFFDVAKNPQDLQILKVKEIKNGR 267
Query: 221 ICLV 224
+ ++
Sbjct: 268 LAMI 271
>gi|384246702|gb|EIE20191.1| light harvesting complex a protein [Coccomyxa subellipsoidea C-169]
Length = 230
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 49/91 (53%), Positives = 62/91 (68%), Gaps = 5/91 (5%)
Query: 49 TVVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAG 108
T+V + R WLP +PP +L G LAGD GFDPLGLG +PE L+WY +AE + R+AMAG
Sbjct: 28 TLVTSAARGLWLPDTEPPAHLKGELAGDRGFDPLGLGSEPERLKWYTEAEKTNGRWAMAG 87
Query: 109 VAGILFTDLLRVTGIRELPVWYEAGAVEFKF 139
VAGIL +LL V P W+EAGA ++ F
Sbjct: 88 VAGILGQELLGVQ-----PKWFEAGAKDYGF 113
>gi|170388|gb|AAA34140.1| chlorophyll a/b-binding protein [Solanum lycopersicum]
gi|225895|prf||1402358A photosystem I protein CAB
Length = 246
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 68/212 (32%), Positives = 101/212 (47%), Gaps = 31/212 (14%)
Query: 20 ICNDVNKSSIGITSAFLPAKSGTTRRYLATVVRAQQRPTWLPGVDPPPYLDGTLAGDFGF 79
+C S+ +A +P G T ++ R W+PG P YLDG+ GDFGF
Sbjct: 14 VCPSFLSSTKSKFAAAMPVSVGATN----SMSRFSMSADWMPGQPRPSYLDGSAPGDFGF 69
Query: 80 DPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVW--YEAGAVEF 137
DPLGLGE P +L Y ++EL+H R+AM V GI+ + L + + W G +
Sbjct: 70 DPLGLGEVPANLERYKESELIHCRWAMLAVPGIIVPEALGLGNWVKAQEWAAIPGGQATY 129
Query: 138 -----KFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPG 192
+ + T+ ++ L + F E +R M+ S+ K+ YPG
Sbjct: 130 LGQPVPWGTLPTILAIEFLAIAFVEHQRSMEK---DSEKKK----------------YPG 170
Query: 193 GPLLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
G +PLG +KD E K+KEIKNG + L+
Sbjct: 171 G-AFDPLGYSKDPAKFEELKVKEIKNGRLALL 201
>gi|87313203|gb|ABD37898.1| light-harvesting chlorophyll-a/b binding protein LhcbM1
[Acutodesmus obliquus]
Length = 223
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 70/181 (38%), Positives = 93/181 (51%), Gaps = 34/181 (18%)
Query: 59 WLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLL 118
WL G + P YL G AGD+G+D GL DPE+ + Y + EL+HAR+AM G G + +LL
Sbjct: 53 WLSG-ETPAYLTGEFAGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCITPELL 111
Query: 119 RVTG--IRELPVWYEAGAVEFKFASTRTL--------------FIVQLLLMGFAETKRYM 162
G I E PVW++AGA F+ L +VQ++LMG E R
Sbjct: 112 ANNGTPIAE-PVWFKAGAQIFQDGGLNYLGNENLVHAQSIIVTLLVQVILMGTVEGYR-- 168
Query: 163 DYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLIC 222
++ G A EGL+ YPGG +PLGLA D E K+KEIKNG +
Sbjct: 169 --VNGGP------------AGEGLDKLYPGGDFFDPLGLADDPDTFAELKVKEIKNGRLA 214
Query: 223 L 223
+
Sbjct: 215 M 215
>gi|388491152|gb|AFK33642.1| unknown [Lotus japonicus]
Length = 241
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 61/173 (35%), Positives = 90/173 (52%), Gaps = 27/173 (15%)
Query: 59 WLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLL 118
W+PG PPYLDG+ GDFGFDPL LGE PE+L + ++EL+H R+AM V GIL + L
Sbjct: 48 WMPGQPRPPYLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEAL 107
Query: 119 RVTGIRELPVW--YEAGAVEF-----KFASTRTLFIVQLLLMGFAETKRYMDYISPGSQT 171
+ + W G + + + T+ ++ L + F E +R M+ +
Sbjct: 108 GLGNWVKAQEWAALPGGQATYLGNPVPWGTLPTVLAIEFLAISFVEHQRSMEK---DPEK 164
Query: 172 KEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
K+ YPGG +PLG +KD + E+K+KEIKNG + L+
Sbjct: 165 KK----------------YPGG-AFDPLGYSKDPKKFHEYKVKEIKNGRLALL 200
>gi|493723|emb|CAA45523.1| photosystem I light-harvesting chlorophyll a/b-binding protein
[Nicotiana tabacum]
Length = 245
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 62/173 (35%), Positives = 89/173 (51%), Gaps = 27/173 (15%)
Query: 59 WLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLL 118
W+PG PPYLDG+ GDFGFDPLGLGE P +L Y ++EL+H R+AM V GIL + L
Sbjct: 49 WMPGQPRPPYLDGSAPGDFGFDPLGLGEVPSNLERYKESELIHCRWAMLAVPGILVPEAL 108
Query: 119 RVTGIRELPVW--YEAGAVEF-----KFASTRTLFIVQLLLMGFAETKRYMDYISPGSQT 171
+ + W G + + + T+ ++ L + F E +R M+ +
Sbjct: 109 GLGNWVKAQEWAAIPGGQATYLGQPVPWGTLPTILAIEFLAIAFVEHQRSMEK---DPEK 165
Query: 172 KEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
K+ YPGG +PLG +KD + E K+KEIKNG + L+
Sbjct: 166 KK----------------YPGG-AFDPLGYSKDPKKFEELKVKEIKNGRLALL 201
>gi|398313939|emb|CCI55396.1| PSI antenna protein Lhca1 [Marchantia polymorpha]
Length = 243
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 60/180 (33%), Positives = 87/180 (48%), Gaps = 27/180 (15%)
Query: 52 RAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAG 111
R W+PG P YLDG+ GDFGFDPLGL E PE+ Y ++EL+H R+AM V G
Sbjct: 41 RVSMSSEWMPGQPRPAYLDGSSPGDFGFDPLGLAEVPENFARYKESELIHCRWAMLAVPG 100
Query: 112 ILFTDLLRVTGIRELPVWYEAGAVEFKF-------ASTRTLFIVQLLLMGFAETKRYMDY 164
+L + L + W + + + + ++ L + F E KR +
Sbjct: 101 VLIPEALGLGNWVSAQQWAATPGGQATYLGNPVPWGTLPIILAIEFLAVAFVEAKRGEE- 159
Query: 165 ISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
P + ++ YPGGP +PLG AKD + E+KLKE+KNG + L+
Sbjct: 160 --PDHEKRK----------------YPGGP-FDPLGFAKDPKKLEEYKLKELKNGRLALL 200
>gi|384253398|gb|EIE26873.1| chlorophyll a/b-binding protein [Coccomyxa subellipsoidea C-169]
Length = 250
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 77/225 (34%), Positives = 105/225 (46%), Gaps = 35/225 (15%)
Query: 16 SSSFICNDVNKSSIGITSAFLPAKSGTTRRYLATV-VRAQQRPTWL-PGVDPPPYLDGTL 73
+S+ +CN +S+ SA A G + A + R T+L P D P YL+G
Sbjct: 2 ASALLCNSFAGASL--RSAVPTAGKGNRQVTRAAIEFYGPDRATFLGPFTDTPSYLNGEF 59
Query: 74 AGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR-ELPVWYEA 132
GD+G+D GL DPE+ Y + E++HAR+AM G G + +LL G+ VW++A
Sbjct: 60 PGDYGWDTAGLSADPETFARYREIEVIHARWAMLGALGCVTPELLAKNGVSFGEAVWFKA 119
Query: 133 GAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFG 178
GA F S Q++LMG AE R G
Sbjct: 120 GAQIFGSDGLNYLGNSSLVHAQSIIATLACQVILMGGAEAYRAA---------------G 164
Query: 179 LEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
LEGL+ YPGGP +PLGLA D E K+KEIKNG + +
Sbjct: 165 EGPGLEGLDSLYPGGP-FDPLGLADDPDTFSELKVKEIKNGRLAM 208
>gi|225449078|ref|XP_002275552.1| PREDICTED: chlorophyll a-b binding protein 6A, chloroplastic
isoform 1 [Vitis vinifera]
gi|147800947|emb|CAN75566.1| hypothetical protein VITISV_032585 [Vitis vinifera]
Length = 244
Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 62/184 (33%), Positives = 92/184 (50%), Gaps = 27/184 (14%)
Query: 48 ATVVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMA 107
A R W+PG PPYLDG+ GDFGFDPL LGE PE+L Y ++EL+H R+AM
Sbjct: 37 AGSARVTMSADWMPGQPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAML 96
Query: 108 GVAGILFTDLLRVTGIRELPVW--YEAGAVEF-----KFASTRTLFIVQLLLMGFAETKR 160
V G+L + L + + W G + + + T+ ++ L + F E +R
Sbjct: 97 AVPGVLVPEALGLGNWVQAQEWAAIPGGQATYLGNPVPWGNLPTILAIEFLAIAFVEHQR 156
Query: 161 YMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGL 220
M+ ++ K+ YPGG +PLG +KD E+K+KEIKNG
Sbjct: 157 SMEK---DTEKKK----------------YPGG-AFDPLGYSKDPVKFEEYKVKEIKNGR 196
Query: 221 ICLV 224
+ ++
Sbjct: 197 LAIL 200
>gi|32307466|gb|AAP79138.1| chlorophyll a/b-binding protein II 2 [Bigelowiella natans]
Length = 346
Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 68/188 (36%), Positives = 89/188 (47%), Gaps = 36/188 (19%)
Query: 56 RPTWLPGV---DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGI 112
RP WLP P YL G GD+G+D LGL DPE+ Y +AEL+HAR+AM G G
Sbjct: 130 RPKWLPDAFLAGVPDYLTGEYPGDYGWDALGLSSDPETFANYREAELLHARWAMLGALGC 189
Query: 113 LFTDLLRVT---GIRELPVWYEAGAVEFKFASTRTL--------------FIVQLLLMGF 155
+F ++L + G+ E PVW++AGA+ S L Q+LLMG
Sbjct: 190 IFPEILAMNYGVGLEE-PVWFKAGALVLNDKSIDYLGSPQLVHASSIIAIAAAQVLLMGG 248
Query: 156 AETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKE 215
AE R G E + +PGG NPL KD + E K+KE
Sbjct: 249 AEAYRASGVAPNG---------------EEFDKMHPGGYYFNPLKFGKDEADLAELKVKE 293
Query: 216 IKNGLICL 223
IKNG + +
Sbjct: 294 IKNGRLAM 301
>gi|388521809|gb|AFK48966.1| unknown [Lotus japonicus]
Length = 241
Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 60/173 (34%), Positives = 89/173 (51%), Gaps = 27/173 (15%)
Query: 59 WLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLL 118
W+PG PPYLDG+ GDFGFDPL LGE PE+L + ++EL+H R+AM V GIL + L
Sbjct: 48 WMPGQPRPPYLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEAL 107
Query: 119 RVTGIRELPVWYEAGAVEFKF-------ASTRTLFIVQLLLMGFAETKRYMDYISPGSQT 171
+ + W + + + T+ ++ L + F E +R M+ +
Sbjct: 108 GLGNWVKAQEWAALPGGQATYLGNPVPRGTLPTVLAIEFLAISFVEHQRSMEK---DPEK 164
Query: 172 KEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
K+ YPGG +PLG +KD + E+K+KEIKNG + L+
Sbjct: 165 KK----------------YPGG-AFDPLGYSKDPKKFHEYKVKEIKNGRLALL 200
>gi|297820242|ref|XP_002878004.1| hypothetical protein ARALYDRAFT_485905 [Arabidopsis lyrata subsp.
lyrata]
gi|297323842|gb|EFH54263.1| hypothetical protein ARALYDRAFT_485905 [Arabidopsis lyrata subsp.
lyrata]
Length = 241
Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 64/183 (34%), Positives = 91/183 (49%), Gaps = 27/183 (14%)
Query: 49 TVVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAG 108
V R + W+PG P YLDG+ GDFGFDPLGLGE PE+L Y ++EL+H R+AM
Sbjct: 38 NVGRIRMAAHWMPGEPRPAYLDGSAPGDFGFDPLGLGEVPENLERYKESELIHCRWAMLA 97
Query: 109 VAGILFTDLLRVTGIRELPVW--YEAGAVEF-----KFASTRTLFIVQLLLMGFAETKRY 161
V GIL + L + W G + + + T+ ++ L + F E +R
Sbjct: 98 VPGILVPEALGYGNWVKAQEWAAVPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRS 157
Query: 162 MDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLI 221
M+ + K+ YPGG +PLG +KD + E K+KEIKNG +
Sbjct: 158 MEK---DPEKKK----------------YPGG-AFDPLGYSKDPKKLEELKVKEIKNGRL 197
Query: 222 CLV 224
L+
Sbjct: 198 ALL 200
>gi|351734432|ref|NP_001235996.1| uncharacterized protein LOC100305992 [Glycine max]
gi|255627211|gb|ACU13950.1| unknown [Glycine max]
Length = 240
Score = 97.4 bits (241), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 70/218 (32%), Positives = 102/218 (46%), Gaps = 41/218 (18%)
Query: 14 SSSSSFICNDVNKSSIGITSAFLPAKSGTTRRYLATVVRAQQRPTWLPGVDPPPYLDGTL 73
SSS S V SS G+T+A + R W+PG PPYLDG+
Sbjct: 13 SSSKSRFATAVPLSSFGVTNA--------------SSSRFSMSADWMPGQPRPPYLDGSA 58
Query: 74 AGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVW--YE 131
GDFGFDPL LGE PE+L + ++EL+H +AM V GIL + L + + W
Sbjct: 59 PGDFGFDPLRLGEVPENLERFKESELIHCGWAMLAVPGILVPEALGLGNWVKAQEWAAVP 118
Query: 132 AGAVEF-----KFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGL 186
G + + + T+ ++ L + F E +R M G ++
Sbjct: 119 GGQATYLGNPVPWGTLPTILAIEFLAISFVEHQRSM-----GKDPEKKK----------- 162
Query: 187 EPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
YPGG +PLG +KD + E+K+KE+KNG + L+
Sbjct: 163 ---YPGG-AFDPLGYSKDPKTFHEYKVKELKNGRLALL 196
>gi|116784661|gb|ABK23427.1| unknown [Picea sitchensis]
gi|116785117|gb|ABK23601.1| unknown [Picea sitchensis]
Length = 247
Score = 97.1 bits (240), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 73/240 (30%), Positives = 109/240 (45%), Gaps = 54/240 (22%)
Query: 1 MAVAVGRGFLLQP-------SSSSSFICNDVNKSSIGITSAFLPAKSGTTRRYLATVVRA 53
MA AVG ++ P SS+ S + N S+G+ + R
Sbjct: 1 MATAVGCSHVVAPVVFAGAFSSAKSRFFSPTNSLSLGVCNG----------------SRV 44
Query: 54 QQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGIL 113
W+PG PP+LDG+ GDFGFDPL LG PE+L Y ++EL+H R+AM V G+L
Sbjct: 45 SMSAEWMPGQPRPPHLDGSAPGDFGFDPLRLGVVPENLERYKESELIHCRWAMLAVPGVL 104
Query: 114 FTDLLRVTGIRELPVW---------YEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDY 164
+ L + E W Y V + + + V+ L + F E++R +
Sbjct: 105 IPEALGLGNWVEAQKWAAIPGNQATYLGAPVPWGYLP--VILAVEFLSIAFVESQRNGE- 161
Query: 165 ISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
P + ++ YPGG +PLG +KD +E+K+KEIKNG + L+
Sbjct: 162 --PDPEKRK----------------YPGG-AFDPLGFSKDPAKFKEYKVKEIKNGRLALL 202
>gi|145345103|ref|XP_001417062.1| chlorophyll a/b binding, maybe photosystem I light harvesting
complex [Ostreococcus lucimarinus CCE9901]
gi|144577288|gb|ABO95355.1| chlorophyll a/b binding, maybe photosystem I light harvesting
complex [Ostreococcus lucimarinus CCE9901]
Length = 252
Score = 97.1 bits (240), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 61/166 (36%), Positives = 89/166 (53%), Gaps = 30/166 (18%)
Query: 59 WLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLL 118
W PG P YLDGT+AGD+GFDPL LG +PE+L + +AEL++ R+AMA AGILFTD +
Sbjct: 43 WYPGAVAPKYLDGTMAGDYGFDPLRLGANPETLPYLQEAELMNGRWAMAATAGILFTDAV 102
Query: 119 RVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFG 178
LP W+EAGAV++ + L Q++ M E R ++ G
Sbjct: 103 G------LPKWWEAGAVDYGM-DFQQLVGFQVVAMSILEAARTRGFMKSGES-------- 147
Query: 179 LEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
G+ +P +P GL +A + ++KE+KN + +V
Sbjct: 148 ------GVLNAFP----FDPAGL-----DAPDKRVKEVKNARLAMV 178
>gi|312282193|dbj|BAJ33962.1| unnamed protein product [Thellungiella halophila]
Length = 241
Score = 97.1 bits (240), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 64/183 (34%), Positives = 91/183 (49%), Gaps = 27/183 (14%)
Query: 49 TVVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAG 108
V R + W+PG P YLDG+ GDFGFDPLGLGE PE+L Y ++EL+H R+AM
Sbjct: 38 NVGRIRMAAHWMPGEPRPAYLDGSAPGDFGFDPLGLGEVPENLERYKESELIHCRWAMLA 97
Query: 109 VAGILFTDLLRVTGIRELPVW--YEAGAVEF-----KFASTRTLFIVQLLLMGFAETKRY 161
V GIL + L + W G + + + T+ ++ L + F E +R
Sbjct: 98 VPGILVPEALGYGNWVKAQEWAALPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRS 157
Query: 162 MDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLI 221
M+ + K+ YPGG +PLG +KD + E K+KEIKNG +
Sbjct: 158 MEK---DPEKKK----------------YPGG-AFDPLGYSKDPKKFEELKVKEIKNGRL 197
Query: 222 CLV 224
L+
Sbjct: 198 ALL 200
>gi|116794024|gb|ABK26977.1| unknown [Picea sitchensis]
Length = 247
Score = 97.1 bits (240), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 73/240 (30%), Positives = 109/240 (45%), Gaps = 54/240 (22%)
Query: 1 MAVAVGRGFLLQP-------SSSSSFICNDVNKSSIGITSAFLPAKSGTTRRYLATVVRA 53
MA AVG ++ P SS+ S + N S+G+ + R
Sbjct: 1 MATAVGCSHVVAPVVFAGAFSSAKSRFFSPTNSLSLGVCNG----------------SRV 44
Query: 54 QQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGIL 113
W+PG PP+LDG+ GDFGFDPL LG PE+L Y ++EL+H R+AM V G+L
Sbjct: 45 SMSDEWMPGQPRPPHLDGSAPGDFGFDPLRLGVVPENLERYKESELIHCRWAMLAVPGVL 104
Query: 114 FTDLLRVTGIRELPVW---------YEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDY 164
+ L + E W Y V + + + V+ L + F E++R +
Sbjct: 105 IPEALGLGNWVEAQKWAAIPGNQATYLGAPVPWGYLP--VILAVEFLSIAFVESQRNGE- 161
Query: 165 ISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
P + ++ YPGG +PLG +KD +E+K+KEIKNG + L+
Sbjct: 162 --PDPEKRK----------------YPGG-AFDPLGFSKDPAKFKEYKVKEIKNGRLALL 202
>gi|87313223|gb|ABD37908.1| light-harvesting chlorophyll-a/b binding protein Lhca6
[Chlamydomonas incerta]
Length = 192
Score = 97.1 bits (240), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 63/172 (36%), Positives = 86/172 (50%), Gaps = 28/172 (16%)
Query: 58 TWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDL 117
WLPG D P +L L G++GFDPL LG+DP SL+ + ++E++H R+AM GVAG L +L
Sbjct: 2 NWLPGSDAPAWLPEDLPGNYGFDPLSLGKDPASLKRFTESEVIHGRWAMLGVAGSLAVEL 61
Query: 118 LRVTGIRELPVWYEAGAVEFKFA-----STRTLFIVQLLLMGFAETKRYMDYISPGSQTK 172
L + P+W G F TL + + M AE +R
Sbjct: 62 LGYGNWYDAPLWAVNGGKATWFGIDVPFDLNTLLAFEFVAMAAAEGQR------------ 109
Query: 173 EGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
G G+ YPGG +PLG AKD + E KLKE+KNG + +V
Sbjct: 110 -GDAGGVV---------YPGG-AFDPLGFAKDASKSGELKLKEVKNGRLAMV 150
>gi|4139222|gb|AAD03734.1| light harvesting complex I protein precursor [Chlamydomonas
reinhardtii]
gi|40714519|dbj|BAD06923.1| light-harvesting chlorophyll-a/b protein of photosystem I
[Chlamydomonas reinhardtii]
Length = 228
Score = 96.7 bits (239), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 71/207 (34%), Positives = 99/207 (47%), Gaps = 34/207 (16%)
Query: 28 SIGITSAFLPAKSGTTRRYLATVVRAQ----QRPTWLPGVDPPPYLDGTLAGDFGFDPLG 83
S+ SA A G + R +A V + WLPG D P +L L G++GFDPL
Sbjct: 4 SMRTLSARTAAPRGFSGRRVAAVSNGSRVTMKAGNWLPGSDAPAWLPDDLPGNYGFDPLS 63
Query: 84 LGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAG------AVEF 137
LG++P SL+ + ++E++H R+AM GVAG L +LL + P+W G +E
Sbjct: 64 LGKEPASLKRFTESEVIHGRWAMLGVAGSLAVELLGYGNWYDAPLWAVNGGKATWFGIEV 123
Query: 138 KFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLN 197
F L + + M AE +R G G+ YPGG +
Sbjct: 124 PF-DLNALLAFEFVAMAAAEGQR-------------GDAGGVV---------YPGG-AFD 159
Query: 198 PLGLAKDIRNAREWKLKEIKNGLICLV 224
PLG AKD + E KLKEIKNG + +V
Sbjct: 160 PLGFAKDSSKSGELKLKEIKNGRLAMV 186
>gi|90191871|gb|ABD91647.1| major light-harvesting chlorophyll a/b protein 2.2 [Dunaliella
salina]
gi|90191875|gb|ABD91649.1| major light-harvesting chlorophyll a/b protein 2.2 [Dunaliella
salina]
Length = 253
Score = 96.7 bits (239), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 67/179 (37%), Positives = 89/179 (49%), Gaps = 31/179 (17%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLL-RVTG 122
D P YL G GD+G+D GL DP++ Y + EL+HAR+A+ G GIL +LL + G
Sbjct: 49 DTPEYLTGEFPGDYGWDTAGLSADPQTFARYREIELIHARWALLGALGILTPELLSQYAG 108
Query: 123 IR-ELPVWYEAGAVEFKFASTRTL--------------FIVQLLLMGFAETKRYMDYISP 167
++ PVW++AGA F L VQ++LMG AE R
Sbjct: 109 VQFGEPVWFKAGAQIFAAGGLNYLGNESLIHAQSIIATLAVQVVLMGLAEAYRANG---- 164
Query: 168 GSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICLVLC 226
G E L+ L+ YPGGP +PLGLA D E K+KEIKNG + + C
Sbjct: 165 ----------GSEGFLDDLDTLYPGGP-FDPLGLADDPDTFAELKVKEIKNGRLAMFSC 212
>gi|20788|emb|CAA41404.1| Type 1 chlorophyll a /b-binding protein [Pinus sylvestris]
Length = 246
Score = 96.7 bits (239), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 65/197 (32%), Positives = 97/197 (49%), Gaps = 30/197 (15%)
Query: 35 FLPAKSGTTRRYLATVVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWY 94
F P S RR+ + V + + W+PG PP+LDG+ GDFGFDPL LG PE+L Y
Sbjct: 28 FSPTSSLVGRRHGSRVSMSAE---WMPGQPRPPHLDGSAPGDFGFDPLRLGVIPENLERY 84
Query: 95 VQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAG-------AVEFKFASTRTLFI 147
++EL+H R+AM V G+L + L + E W V + +
Sbjct: 85 KESELIHCRWAMLAVPGMLIPEALGLGNWVEAQKWAAIPGSQATYFGVPVPWGYLPIVLA 144
Query: 148 VQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRN 207
V+ L + F E++R + P + ++ YPGG +PLG +KD
Sbjct: 145 VEFLAIAFVESQRNGE---PDPEKRK----------------YPGG-AFDPLGFSKDPVK 184
Query: 208 AREWKLKEIKNGLICLV 224
+E+K+KEIKNG + L+
Sbjct: 185 FKEYKVKEIKNGRLALL 201
>gi|159474444|ref|XP_001695335.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
gi|158275818|gb|EDP01593.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
Length = 239
Score = 96.3 bits (238), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 71/207 (34%), Positives = 99/207 (47%), Gaps = 34/207 (16%)
Query: 28 SIGITSAFLPAKSGTTRRYLATVVRAQ----QRPTWLPGVDPPPYLDGTLAGDFGFDPLG 83
S+ SA A G + R +A V + WLPG D P +L L G++GFDPL
Sbjct: 4 SMRTLSARTAAPRGFSGRRVAAVSNGSRVTMKAGNWLPGSDAPAWLPDDLPGNYGFDPLS 63
Query: 84 LGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAG------AVEF 137
LG++P SL+ + ++E++H R+AM GVAG L +LL + P+W G +E
Sbjct: 64 LGKEPASLKRFTESEVIHGRWAMLGVAGSLAVELLGYGNWYDAPLWAVNGGKATWFGIEV 123
Query: 138 KFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLN 197
F L + + M AE +R G G+ YPGG +
Sbjct: 124 PF-DLNALLAFEFVAMAAAEGQR-------------GDAGGVV---------YPGG-AFD 159
Query: 198 PLGLAKDIRNAREWKLKEIKNGLICLV 224
PLG AKD + E KLKEIKNG + +V
Sbjct: 160 PLGFAKDSSKSGELKLKEIKNGRLAMV 186
>gi|296086034|emb|CBI31475.3| unnamed protein product [Vitis vinifera]
Length = 201
Score = 96.3 bits (238), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 60/173 (34%), Positives = 90/173 (52%), Gaps = 27/173 (15%)
Query: 59 WLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLL 118
W+PG PPYLDG+ GDFGFDPL LGE PE+L Y ++EL+H R+AM V G+L + L
Sbjct: 5 WMPGQPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGVLVPEAL 64
Query: 119 RVTGIRELPVW--YEAGAVEF-----KFASTRTLFIVQLLLMGFAETKRYMDYISPGSQT 171
+ + W G + + + T+ ++ L + F E +R M+ ++
Sbjct: 65 GLGNWVQAQEWAAIPGGQATYLGNPVPWGNLPTILAIEFLAIAFVEHQRSMEK---DTEK 121
Query: 172 KEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
K+ YPGG +PLG +KD E+K+KEIKNG + ++
Sbjct: 122 KK----------------YPGG-AFDPLGYSKDPVKFEEYKVKEIKNGRLAIL 157
>gi|302804514|ref|XP_002984009.1| light-harvesting complex [Selaginella moellendorffii]
gi|300148361|gb|EFJ15021.1| light-harvesting complex [Selaginella moellendorffii]
Length = 246
Score = 96.3 bits (238), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 59/180 (32%), Positives = 89/180 (49%), Gaps = 27/180 (15%)
Query: 52 RAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAG 111
R WLPG P YLDG+ GDFGFDPLGLGE P++L + ++EL+H R+AM V G
Sbjct: 44 RVSMSAEWLPGQPRPAYLDGSAPGDFGFDPLGLGEVPDNLERFKESELIHCRWAMLAVPG 103
Query: 112 ILFTDLLRVTGIRELPVWYEAGAVEFKFAST-------RTLFIVQLLLMGFAETKRYMDY 164
L + L + E W + + T + ++ + + F E++R
Sbjct: 104 CLIPEALGLGNWVEAQQWAATPGGQATYLGTPVPWGTLPVIIAIEFVAIAFVESRRIG-- 161
Query: 165 ISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
P ++ ++ YPGG +PLG +KD + E+KLKE+KNG + L+
Sbjct: 162 -VPSAEKRK----------------YPGG-AFDPLGFSKDPKKFEEFKLKEVKNGRLALL 203
>gi|145078806|tpg|DAA05885.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm5 [Euglena gracilis]
Length = 695
Score = 96.3 bits (238), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 67/175 (38%), Positives = 94/175 (53%), Gaps = 33/175 (18%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVT---G 122
PPYL+G L GD+G+D GLG DP +L+ Y +AEL+H R+AM G G++F + L
Sbjct: 243 PPYLNGELPGDYGWDSAGLGADPITLQRYREAELIHGRWAMLGALGVVFPEYLSRNFDIP 302
Query: 123 IRELPVWYEAGAVEF-----------KFASTRTLFIV---QLLLMGFAETKRYMDYISPG 168
I E PVW++AGA F + +++ ++ Q+LLMG AE R +
Sbjct: 303 IAE-PVWFKAGAQIFSEGGLDYLGDARLVHAQSILLILGTQVLLMGAAEAYRTGN----- 356
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
GL + L+ YPGGP +PLGLA D E K+KEIKNG + +
Sbjct: 357 ---------GLGNFGKDLDSLYPGGP-FDPLGLANDPDTLAELKVKEIKNGRLAM 401
Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 67/175 (38%), Positives = 87/175 (49%), Gaps = 30/175 (17%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLL-RVTGIR 124
P YL G L GD+G+D GLG DP +L+ Y +AEL+H R+AM G G + L R G++
Sbjct: 2 PSYLTGELPGDYGWDTAGLGADPFTLQRYREAELIHGRWAMLGAVGCFLPEYLNRFFGVQ 61
Query: 125 -ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPGS 169
P+W++AGA F S + Q+LLMG E R
Sbjct: 62 FGEPIWFKAGAQIFSAEGLNYFGQPALIHAKSLLAILATQVLLMGAVEAYR-------AG 114
Query: 170 QTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
T G F E L+ YPGGP +PLGLA D E K+KEIKNG + +V
Sbjct: 115 NTAPGQFG------EDLDRLYPGGP-FDPLGLADDPDTFAELKVKEIKNGRLAMV 162
Score = 90.9 bits (224), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 66/175 (37%), Positives = 87/175 (49%), Gaps = 30/175 (17%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLL-RVTGIR 124
P YL G L GD+G+D GLG DP +L+ Y +AEL+H R+AM G G + L R G++
Sbjct: 486 PSYLTGELPGDYGWDTAGLGADPFTLQRYREAELIHGRWAMLGAVGCFLPEYLNRFFGVQ 545
Query: 125 -ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPGS 169
P+W++AGA F S + Q+LLMG E R
Sbjct: 546 FGEPIWFKAGAQIFSAEGLNYFGQPALIHAKSLLAILATQVLLMGAVEAYR-------AG 598
Query: 170 QTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
T G F E L+ YPGGP +PLGLA D E K+KEIKNG + ++
Sbjct: 599 NTAPGQFG------EDLDRLYPGGP-FDPLGLADDPDTFAELKVKEIKNGRLAMM 646
>gi|90191869|gb|ABD91646.1| major light-harvesting chlorophyll a/b protein 2.1 [Dunaliella
salina]
gi|90191873|gb|ABD91648.1| major light-harvesting chlorophyll a/b protein 2.1 [Dunaliella
salina]
Length = 253
Score = 96.3 bits (238), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 67/179 (37%), Positives = 90/179 (50%), Gaps = 31/179 (17%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLL-RVTG 122
D P YL G GD+G+D GL DP++ Y + EL+HAR+A+ G GIL +LL + G
Sbjct: 49 DTPEYLTGEFPGDYGWDTAGLSADPQTFARYREIELIHARWALLGALGILTPELLSQYAG 108
Query: 123 IR-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISP 167
++ PVW++AGA F S VQ++LMG AE R
Sbjct: 109 VQFGEPVWFKAGAQIFADGGLNYLGNESLIHAQSIIATLAVQVVLMGLAEAYR------- 161
Query: 168 GSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICLVLC 226
+ G E L+ L+ YPGGP +PLGLA D E K+KEIKNG + + C
Sbjct: 162 -------ANGGSEGFLDDLDTLYPGGP-FDPLGLADDPDTFAELKVKEIKNGRLAMFSC 212
>gi|115829|sp|P27517.1|CB2_DUNTE RecName: Full=Chlorophyll a-b binding protein of LHCII type I,
chloroplastic; Short=CAB; Short=LHCP; Flags: Precursor
gi|167985|gb|AAA62772.1| 28.5 kDa LHCII apoprotein [Dunaliella tertiolecta]
Length = 253
Score = 96.3 bits (238), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 67/179 (37%), Positives = 90/179 (50%), Gaps = 31/179 (17%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLL-RVTG 122
D P YL G GD+G+D GL DP++ Y + EL+HAR+A+ G GIL +LL + G
Sbjct: 49 DTPEYLTGEFPGDYGWDTAGLSADPQTFARYREIELIHARWALLGALGILTPELLSQYAG 108
Query: 123 IR-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISP 167
++ PVW++AGA F S VQ++LMG AE R
Sbjct: 109 VQFGEPVWFKAGAQIFADGGLNYLGNESLIHAQSIIATLAVQVVLMGLAEAYR------- 161
Query: 168 GSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICLVLC 226
+ G E L+ L+ YPGGP +PLGLA D E K+KEIKNG + + C
Sbjct: 162 -------ANGGSEGFLDDLDTLYPGGP-FDPLGLADDPDTFAELKVKEIKNGRLAMFSC 212
>gi|18125|emb|CAA46235.1| light harvesting complex protein I-20 [Chlamydomonas reinhardtii]
Length = 224
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 70/202 (34%), Positives = 97/202 (48%), Gaps = 34/202 (16%)
Query: 33 SAFLPAKSGTTRRYLATVVRAQ----QRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDP 88
SA A G + R +A V + WLPG D P +L L G++GFDPL LG++P
Sbjct: 5 SARTAAPRGFSGRRVAAVSNGSRVTMKAGNWLPGSDAPAWLPDDLPGNYGFDPLSLGKEP 64
Query: 89 ESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAG------AVEFKFAST 142
SL+ + ++E++H R+AM GVAG L +LL + P+W G +E F
Sbjct: 65 ASLKRFTESEVIHGRWAMLGVAGSLAVELLGYGNWYDAPLWAVNGGKATWFGIEVPF-DL 123
Query: 143 RTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLA 202
L + + M AE +R G G+ YPGG +PLG A
Sbjct: 124 NALLAFEFVAMAAAEGQR-------------GDAGGVV---------YPGG-AFDPLGFA 160
Query: 203 KDIRNAREWKLKEIKNGLICLV 224
KD + E KLKEIKNG + +V
Sbjct: 161 KDSSKSGELKLKEIKNGRLAMV 182
>gi|157965839|gb|ABW06956.1| chloroplast light-harvesting complex II protein precursor [Euglena
gracilis]
Length = 468
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 67/175 (38%), Positives = 94/175 (53%), Gaps = 33/175 (18%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVT---G 122
PPYL+G L GD+G+D GLG DP +L+ Y +AEL+H R+AM G G++F + L
Sbjct: 16 PPYLNGELPGDYGWDSAGLGADPITLQRYREAELIHGRWAMLGALGVVFPEYLSRNFDIP 75
Query: 123 IRELPVWYEAGAVEF-----------KFASTRTLFIV---QLLLMGFAETKRYMDYISPG 168
I E PVW++AGA F + +++ ++ Q+LLMG AE R +
Sbjct: 76 IAE-PVWFKAGAQIFSEGGLDYLGDARLVHAQSILLILGTQVLLMGAAEAYRTGN----- 129
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
GL + L+ YPGGP +PLGLA D E K+KEIKNG + +
Sbjct: 130 ---------GLGNFGKDLDSLYPGGP-FDPLGLANDPDTLAELKVKEIKNGRLAM 174
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 67/175 (38%), Positives = 87/175 (49%), Gaps = 30/175 (17%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLL-RVTGIR 124
P YL G L GD+G+D GLG DP +L+ Y +AEL+H R+AM G G + L R G++
Sbjct: 259 PSYLTGELPGDYGWDTAGLGADPFTLQRYREAELIHGRWAMLGAVGCFLPEYLNRFFGVQ 318
Query: 125 -ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPGS 169
P+W++AGA F S + Q+LLMG E R
Sbjct: 319 FGEPIWFKAGAQIFSAEGLNYFGQPALIHAKSLLAILATQVLLMGAVEAYR-------AG 371
Query: 170 QTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
T G F E L+ YPGGP +PLGLA D E K+KEIKNG + +V
Sbjct: 372 NTAPGQFG------EDLDRLYPGGP-FDPLGLADDPDTFAELKVKEIKNGRLAMV 419
>gi|217071344|gb|ACJ84032.1| unknown [Medicago truncatula]
gi|388494662|gb|AFK35397.1| unknown [Medicago truncatula]
Length = 282
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 58/173 (33%), Positives = 89/173 (51%), Gaps = 27/173 (15%)
Query: 59 WLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLL 118
W+PG P YLDG+ GDFGFDPL LGE PE+L + ++EL+H R+AM V GIL + L
Sbjct: 49 WMPGQPRPSYLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEAL 108
Query: 119 RVTGIRELPVW--YEAGAVEF-----KFASTRTLFIVQLLLMGFAETKRYMDYISPGSQT 171
+ + W G + + + T+ +++ L + F E +R M+
Sbjct: 109 GLGNWVKAQEWAALPGGQATYLGNPVPWGTLPTILVIEFLSIAFVEHQRSMEK------- 161
Query: 172 KEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
+ + YPGG +PLG +KD + E+K+KE+KNG + L+
Sbjct: 162 ------------DPEKKKYPGG-AFDPLGYSKDPKKFHEYKIKEVKNGRLALL 201
>gi|359754921|gb|AEV59650.1| chloroplast photosystem II light harvesting complex protein type
III, partial [Oxytropis splendens]
Length = 201
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 71/198 (35%), Positives = 96/198 (48%), Gaps = 32/198 (16%)
Query: 14 SSSSSFICNDVNKSSIGITSAFLPAKSGTTRRYLATVVRAQ-----------QRPTWLPG 62
SSSS + K S G S P S R + +V+A RP W
Sbjct: 5 SSSSLTFSAEAVKQSFGARS---PQSSFAFSRKGSFIVKATSTPPVKQGAGANRPLWFAS 61
Query: 63 VDPPPYLDGTLAGDFGFDPLGLGEDPESL------RWYVQAELVHARFAMAGVAGILFTD 116
YLDG+L GD+GFDPLGL DPE RW E+++ RFAM G AG + +
Sbjct: 62 EQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPRWLAYGEIINGRFAMLGAAGAIAPE 120
Query: 117 LLRVTGI----RELPVWYEAGAVE-----FKFASTRTLFIVQLLLMGFAETKRYMDYISP 167
+L G+ LP W++ G + +A TLF++++ LMGFAE +R D+ +P
Sbjct: 121 ILGKAGLIPEETALP-WFQTGVIPPAGTYTYWADNYTLFVLEMALMGFAEHRRLQDWYNP 179
Query: 168 GSQTKEGSFFGLEAALEG 185
GS K+ F GLE L G
Sbjct: 180 GSMGKQ-YFLGLEKGLGG 196
>gi|13265501|gb|AAG40043.2|AF324692_1 AT3g54890 [Arabidopsis thaliana]
Length = 241
Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 63/183 (34%), Positives = 90/183 (49%), Gaps = 27/183 (14%)
Query: 49 TVVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAG 108
V R + W+PG P YLDG+ GDFGFDPLGLGE P +L Y ++EL+H R+AM
Sbjct: 38 NVGRIKMAAHWMPGEPRPAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLA 97
Query: 109 VAGILFTDLLRVTGIRELPVW--YEAGAVEF-----KFASTRTLFIVQLLLMGFAETKRY 161
V GIL + L + W G + + + T+ ++ L + F E +R
Sbjct: 98 VPGILVPEALGYGNWVKAQEWAALPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRS 157
Query: 162 MDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLI 221
M+ + K+ YPGG +PLG +KD + E K+KEIKNG +
Sbjct: 158 MEK---DPEKKK----------------YPGG-AFDPLGYSKDPKKLEELKVKEIKNGRL 197
Query: 222 CLV 224
L+
Sbjct: 198 ALL 200
>gi|15233115|ref|NP_191049.1| light-harvesting complex I chlorophyll a/b binding protein 1
[Arabidopsis thaliana]
gi|75220543|sp|Q01667.1|CAB6_ARATH RecName: Full=Chlorophyll a-b binding protein 6, chloroplastic;
AltName: Full=LHCI-730; AltName: Full=LHCII type III
CAB-6; AltName: Full=Light-harvesting complex protein
Lhca1; Flags: Precursor
gi|268612158|pdb|2WSC|1 Chain 1, Improved Model Of Plant Photosystem I
gi|268612176|pdb|2WSE|1 Chain 1, Improved Model Of Plant Photosystem I
gi|268612194|pdb|2WSF|1 Chain 1, Improved Model Of Plant Photosystem I
gi|11762180|gb|AAG40368.1|AF325016_1 AT3g54890 [Arabidopsis thaliana]
gi|11908038|gb|AAG41448.1|AF326866_1 putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|12642856|gb|AAK00370.1|AF339688_1 putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|13605732|gb|AAK32859.1|AF361847_1 AT3g54890/F28P10_130 [Arabidopsis thaliana]
gi|16207|emb|CAA39534.1| chlorophyll A/B-binding protein [Arabidopsis thaliana]
gi|166644|gb|AAA32759.1| chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|4678304|emb|CAB41095.1| chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|17979245|gb|AAL49939.1| AT3g54890/F28P10_130 [Arabidopsis thaliana]
gi|20453135|gb|AAM19809.1| AT3g54890/F28P10_130 [Arabidopsis thaliana]
gi|23507771|gb|AAN38689.1| At3g54890/F28P10_130 [Arabidopsis thaliana]
gi|332645785|gb|AEE79306.1| light-harvesting complex I chlorophyll a/b binding protein 1
[Arabidopsis thaliana]
Length = 241
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 63/183 (34%), Positives = 90/183 (49%), Gaps = 27/183 (14%)
Query: 49 TVVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAG 108
V R + W+PG P YLDG+ GDFGFDPLGLGE P +L Y ++EL+H R+AM
Sbjct: 38 NVGRIRMAAHWMPGEPRPAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLA 97
Query: 109 VAGILFTDLLRVTGIRELPVW--YEAGAVEF-----KFASTRTLFIVQLLLMGFAETKRY 161
V GIL + L + W G + + + T+ ++ L + F E +R
Sbjct: 98 VPGILVPEALGYGNWVKAQEWAALPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRS 157
Query: 162 MDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLI 221
M+ + K+ YPGG +PLG +KD + E K+KEIKNG +
Sbjct: 158 MEK---DPEKKK----------------YPGG-AFDPLGYSKDPKKLEELKVKEIKNGRL 197
Query: 222 CLV 224
L+
Sbjct: 198 ALL 200
>gi|145356594|ref|XP_001422513.1| putative CP26, photosystem II light harvesting complex
[Ostreococcus lucimarinus CCE9901]
gi|144582756|gb|ABP00830.1| putative CP26, photosystem II light harvesting complex
[Ostreococcus lucimarinus CCE9901]
Length = 324
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 69/183 (37%), Positives = 98/183 (53%), Gaps = 21/183 (11%)
Query: 55 QRPTWLPG-----VDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGV 109
R +LPG D P YLDGTLAGD+GFDPLGLG D +++ Y AE++HAR+AM +
Sbjct: 106 DRKLYLPGGLLTKADLPSYLDGTLAGDYGFDPLGLGAD-GAIKQYRVAEVIHARWAMLAI 164
Query: 110 AGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFI--------VQLLLMGFAETKRY 161
G++ + L + G VW E G V + R F+ VQ+ LM E R
Sbjct: 165 PGVVIPEALGLPGG----VWTETGKVFLDGETGRPFFLENPIVFAAVQVALMAGVEQFRS 220
Query: 162 MDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLI 221
G +G F E+A +GL+P PGGP L+ +A + ++ K+KEIKNG +
Sbjct: 221 SGEGPAGFVPFKGKF--DESAFKGLDPINPGGP-LDFFNVASNPQDLALLKVKEIKNGRL 277
Query: 222 CLV 224
++
Sbjct: 278 AMI 280
>gi|242060664|ref|XP_002451621.1| hypothetical protein SORBIDRAFT_04g004770 [Sorghum bicolor]
gi|241931452|gb|EES04597.1| hypothetical protein SORBIDRAFT_04g004770 [Sorghum bicolor]
Length = 245
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 64/209 (30%), Positives = 100/209 (47%), Gaps = 31/209 (14%)
Query: 27 SSIGITSAFLPAKSGTTR----RYLATVVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPL 82
S++G+ S P+ ++R T R W+PG P +LDG+ GDFGFDPL
Sbjct: 13 SAVGVPSLLAPSSRWSSRLPFCANATTSGRVTMSAEWMPGQPRPAHLDGSSPGDFGFDPL 72
Query: 83 GLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVW--YEAGAVEF--- 137
GL PE+ + ++E+ H R+AM V GIL + L + + W G +
Sbjct: 73 GLATVPENFERFKESEVYHCRWAMLAVPGILVPEALGLGNWVKAQEWAAVPGGQATYLGN 132
Query: 138 --KFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPL 195
+ S T+ +++ + + FAE +R M+ + K+ YPGG
Sbjct: 133 PVPWGSLPTILVIEFVAIAFAEHQRTMEK---DPEKKK----------------YPGG-A 172
Query: 196 LNPLGLAKDIRNAREWKLKEIKNGLICLV 224
+PLG +KD E+KLKEIKNG + ++
Sbjct: 173 FDPLGFSKDPAKFEEYKLKEIKNGRLAML 201
>gi|553065|gb|AAA65447.1| chlorophyll a/b binding protein, partial [Euglena gracilis]
Length = 334
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 65/167 (38%), Positives = 91/167 (54%), Gaps = 16/167 (9%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI-- 123
P YL G L GD+G+D GLG DP +L Y +AE++HAR+AM G G++ +LL G+
Sbjct: 169 PAYLTGELPGDYGWDTAGLGADPVTLARYREAEVIHARWAMLGALGVVTPELLAGNGVPF 228
Query: 124 RELPVWYEAGAVEF-----KFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFG 178
E VWY+AGA F + +L Q +++ F T M + EG +G
Sbjct: 229 GEGAVWYKAGAQIFSADGLNYLGNPSLIHAQSVVLTFLSTLAIMGAV-------EGYRYG 281
Query: 179 LEAAL-EGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
L + L+ YPGGP +PLGLA D E K+KE+KNG + +V
Sbjct: 282 GGWPLGDDLDRLYPGGP-FDPLGLANDPDAFAELKVKEVKNGRLAMV 327
>gi|307106802|gb|EFN55047.1| hypothetical protein CHLNCDRAFT_35818 [Chlorella variabilis]
Length = 285
Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 66/175 (37%), Positives = 89/175 (50%), Gaps = 20/175 (11%)
Query: 67 PYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR-E 125
P L+GTL GD+G+DPLGL +D E+L Y EL+HAR+AM AG + + L G +
Sbjct: 69 PLLNGTLPGDYGYDPLGLAKDAETLSKYQANELLHARWAMLAAAGAIIPEGLAANGADVK 128
Query: 126 LPVWYEAGAVEF-------------KFASTRTLFIV---QLLLMGFAETKRYMDYISPGS 169
W+E GA ++ LF+V + LMG AE R G
Sbjct: 129 GATWFETGAAMLNGGTLNWFAVPIANISNPLPLFVVVAANVALMGAAENYRRTGEGPAGY 188
Query: 170 QTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
G F E+A + ++ YPGGP +PLGLA D E K+KEIKNG + +V
Sbjct: 189 SPGVGKFD--ESAYDSMDSLYPGGP-FDPLGLADDPEVLAELKVKEIKNGRLAMV 240
>gi|157837283|gb|ABV82714.1| chloroplast chlorophyll a/b binding protein precursor
[Phyllostachys edulis]
Length = 246
Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 66/210 (31%), Positives = 100/210 (47%), Gaps = 32/210 (15%)
Query: 27 SSIGITSAFLPA-KSGTTR----RYLATVVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDP 81
S++G+ S P+ +SG + Y T R W PG P +LDG+ GDFGFDP
Sbjct: 13 SAVGVPSLLAPSSRSGRSGLPFCAYATTSGRVTMSAEWFPGQPRPAHLDGSSPGDFGFDP 72
Query: 82 LGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAG-------A 134
LGLG PE+ + ++E+ H R+AM V G+L + L + + W
Sbjct: 73 LGLGTVPENFERFKESEVYHCRWAMLCVPGVLVPEALGLGNWVKAQEWAAVPGGQATYFG 132
Query: 135 VEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGP 194
V + + T+ ++ L + FAE +R M+ + K+ YPGG
Sbjct: 133 VPVPWGNLPTILAIEFLAIAFAEHQRTMEK---DPEKKK----------------YPGG- 172
Query: 195 LLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
+PLG +KD E+KLKEIKNG + ++
Sbjct: 173 AFDPLGFSKDPVKLEEYKLKEIKNGRLAML 202
>gi|413935742|gb|AFW70293.1| LOW QUALITY PROTEIN: hypothetical protein ZEAMMB73_802965, partial
[Zea mays]
Length = 273
Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 63/209 (30%), Positives = 100/209 (47%), Gaps = 31/209 (14%)
Query: 27 SSIGITSAFLPA-KSGTTRRYLATVV---RAQQRPTWLPGVDPPPYLDGTLAGDFGFDPL 82
S++G+ S P+ +SG + A R W+PG P +LDG+ GDFGFDPL
Sbjct: 13 SAVGVPSLLAPSSRSGRLAPFCANATTSGRVTMSAEWMPGQPRPAHLDGSSPGDFGFDPL 72
Query: 83 GLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKF--- 139
GL PE+ + ++E+ H R+AM V GIL + L + + W + +
Sbjct: 73 GLATVPENFERFKESEVYHCRWAMLAVPGILVPEALGLGNWVKAQEWAAVPGGQATYLGA 132
Query: 140 ----ASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPL 195
+ T+ +++ + + FAE +R M+ + K+ YPGG
Sbjct: 133 PVPWGTLPTILVIEFVAIAFAEHQRTMEK---DPEKKK----------------YPGG-A 172
Query: 196 LNPLGLAKDIRNAREWKLKEIKNGLICLV 224
+PLG +KD E+KLKEIKNG + ++
Sbjct: 173 FDPLGFSKDPAKFEEYKLKEIKNGRLAML 201
>gi|145078761|tpg|DAA05883.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm4 [Euglena gracilis]
Length = 367
Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 64/166 (38%), Positives = 88/166 (53%), Gaps = 13/166 (7%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI-- 123
P YL G L GD+G+D GLG DP +L Y +AE++HAR+AM G G++ +LL G+
Sbjct: 62 PSYLTGELPGDYGWDTAGLGSDPTTLARYREAEVIHARWAMLGALGVVTPELLAGNGVPF 121
Query: 124 RELPVWYEAGAVEF-----KFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFG 178
E VWY+AGA F + +L Q +++ F T M + FG
Sbjct: 122 GEGAVWYKAGAQIFSADGLNYLGNPSLIHAQSVVLTFLSTLAIMGAVEAYRYGGGVGDFG 181
Query: 179 LEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
E L+ YPGGP +PLGLA D E K+KE+KNG + +V
Sbjct: 182 RE-----LDTLYPGGP-FDPLGLANDPDALAELKVKELKNGRLAMV 221
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 35/71 (49%), Positives = 47/71 (66%), Gaps = 2/71 (2%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI-- 123
P YL G L GD+G+D GLG DP +L Y +AE++HAR+AM G G++ +LL G+
Sbjct: 297 PSYLTGELPGDYGWDTAGLGSDPTTLARYREAEVIHARWAMLGALGVVTPELLAGNGVPF 356
Query: 124 RELPVWYEAGA 134
E VWY+AGA
Sbjct: 357 GEGAVWYKAGA 367
>gi|157965835|gb|ABW06954.1| chloroplast light-harvesting complex II protein precursor [Euglena
gracilis]
Length = 545
Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 64/166 (38%), Positives = 88/166 (53%), Gaps = 13/166 (7%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI-- 123
P YL G L GD+G+D GLG DP +L Y +AE++HAR+AM G G++ +LL G+
Sbjct: 114 PSYLTGELPGDYGWDTAGLGSDPTTLARYREAEVIHARWAMLGALGVVTPELLAGNGVPF 173
Query: 124 RELPVWYEAGAVEF-----KFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFG 178
E VWY+AGA F + +L Q +++ F T M + FG
Sbjct: 174 GEGAVWYKAGAQIFSADGLNYLGNPSLIHAQSVVLTFLSTLAIMGAVEAYRYGGGVGDFG 233
Query: 179 LEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
E L+ YPGGP +PLGLA D E K+KE+KNG + +V
Sbjct: 234 RE-----LDTLYPGGP-FDPLGLANDPDALAELKVKELKNGRLAMV 273
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 62/166 (37%), Positives = 86/166 (51%), Gaps = 18/166 (10%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI-- 123
P YL G L GD+G+D GLG DP +L Y +AE++HAR+AM ++ +LL G+
Sbjct: 349 PSYLTGELPGDYGWDTAGLGSDPTTLARYREAEVIHARWAM-----LVTPELLAGNGVPF 403
Query: 124 RELPVWYEAGAVEF-----KFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFG 178
E VWY+AGA F + +L Q +++ F T M + FG
Sbjct: 404 GEGAVWYKAGAQIFSADGLNYLGNPSLIHAQSVVLTFLSTLAIMGAVEAYRYGGGVGDFG 463
Query: 179 LEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
E L+ YPGGP +PLGLA D E K+KE+KNG + +V
Sbjct: 464 RE-----LDTLYPGGP-FDPLGLANDPDALAELKVKELKNGRLAMV 503
Score = 38.5 bits (88), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Query: 190 YPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
YPGGP +PLGLA D E K+KE+KNG + +V
Sbjct: 5 YPGGPF-DPLGLANDPDALAELKVKELKNGRLAMV 38
>gi|145078711|tpg|DAA05881.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm1 [Euglena gracilis]
Length = 642
Score = 94.4 bits (233), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 64/166 (38%), Positives = 88/166 (53%), Gaps = 13/166 (7%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI-- 123
P YL G L GD+G+D GLG DP +L Y +AE++HAR+AM G G++ +LL G+
Sbjct: 408 PSYLTGELPGDYGWDTAGLGSDPTTLARYREAEVIHARWAMLGALGVVTPELLAGNGVPF 467
Query: 124 RELPVWYEAGAVEF-----KFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFG 178
E VWY+AGA F + +L Q +++ F T M + FG
Sbjct: 468 GEGAVWYKAGAQIFSADGLNYLGNPSLIHAQSVVLTFLSTLAIMGAVEAYRYGGGVGDFG 527
Query: 179 LEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
E L+ YPGGP +PLGLA D E K+KE+KNG + +V
Sbjct: 528 RE-----LDTLYPGGP-FDPLGLANDPDALAELKVKELKNGRLAMV 567
Score = 76.3 bits (186), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 75/245 (30%), Positives = 109/245 (44%), Gaps = 37/245 (15%)
Query: 1 MAVAVGRGFLLQPSSSS-------SFICNDVNKSSI-GITSAFLPAKSGTTRRYLATVVR 52
+A+ GF +QP + +F D + ++I TS F + ++ Y
Sbjct: 103 LAMVAMLGFYVQPLVTKAGPVENLTFHLADPSANNIFSFTSGFAMFAATGSKWY------ 156
Query: 53 AQQRPTWL---PGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGV 109
RP WL G P YL G AGD+GFD GL DP+ + Y AEL + R+AM GV
Sbjct: 157 GPNRPKWLGPLSGGAVPEYLKGEYAGDYGFDTAGLAADPKLFQRYRDAELQNGRWAMLGV 216
Query: 110 AGILFTDLL-RVTGI-RELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISP 167
G L ++L V G+ PVW++ GA S L +L+ + +
Sbjct: 217 LGCLAPEVLSNVFGVPYPEPVWFKTGATILNGGSIDYLANPKLI---------HASNLLL 267
Query: 168 GSQTKEGSFFGLEAALEGLE--------PGYPGGPLLNPLGLAKDIRNAREWKLKEIKNG 219
+ FF E E E YPGG + +PLGL+KD E K+KE+KNG
Sbjct: 268 TLVLELVFFFAAETWREAGEGPLGKAQDKSYPGG-VFDPLGLSKDPAAFAEAKVKEVKNG 326
Query: 220 LICLV 224
+ ++
Sbjct: 327 RLAML 331
Score = 44.7 bits (104), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 49/105 (46%), Gaps = 11/105 (10%)
Query: 125 ELPVWYEAGAVEF-----KFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGL 179
E VWY+AGA F + +L Q +++ F T M + FG
Sbjct: 8 EGAVWYKAGAQIFSADGLNYLGNPSLIHAQSVVLTFLSTLAIMGAVEAYRYGGGVGDFGR 67
Query: 180 EAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
E L+ YPGGP +PLGLA D E K+KE+KNG + +V
Sbjct: 68 E-----LDTLYPGGPF-DPLGLANDPDALAELKVKELKNGRLAMV 106
>gi|226503327|ref|NP_001148183.1| chlorophyll a-b binding protein 6A [Zea mays]
gi|195612072|gb|ACG27866.1| chlorophyll a-b binding protein 6A [Zea mays]
gi|195616508|gb|ACG30084.1| chlorophyll a-b binding protein 6A [Zea mays]
gi|223975041|gb|ACN31708.1| unknown [Zea mays]
gi|413935743|gb|AFW70294.1| chlorophyll a-b binding protein 6A [Zea mays]
Length = 245
Score = 94.0 bits (232), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 63/209 (30%), Positives = 100/209 (47%), Gaps = 31/209 (14%)
Query: 27 SSIGITSAFLPA-KSGTTRRYLATVV---RAQQRPTWLPGVDPPPYLDGTLAGDFGFDPL 82
S++G+ S P+ +SG + A R W+PG P +LDG+ GDFGFDPL
Sbjct: 13 SAVGVPSLLAPSSRSGRLAPFCANATTSGRVTMSAEWMPGQPRPAHLDGSSPGDFGFDPL 72
Query: 83 GLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKF--- 139
GL PE+ + ++E+ H R+AM V GIL + L + + W + +
Sbjct: 73 GLATVPENFERFKESEVYHCRWAMLAVPGILVPEALGLGNWVKAQEWAAVPGGQATYLGA 132
Query: 140 ----ASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPL 195
+ T+ +++ + + FAE +R M+ + K+ YPGG
Sbjct: 133 PVPWGTLPTILVIEFVAIAFAEHQRTMEK---DPEKKK----------------YPGG-A 172
Query: 196 LNPLGLAKDIRNAREWKLKEIKNGLICLV 224
+PLG +KD E+KLKEIKNG + ++
Sbjct: 173 FDPLGFSKDPAKFEEYKLKEIKNGRLAML 201
>gi|358248178|ref|NP_001240088.1| uncharacterized protein LOC100786260 [Glycine max]
gi|255636882|gb|ACU18774.1| unknown [Glycine max]
Length = 331
Score = 94.0 bits (232), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 71/222 (31%), Positives = 101/222 (45%), Gaps = 50/222 (22%)
Query: 32 TSAFLPAKSGTTRRYLATVVRAQQRPTWLPGV--DPPPYLDGTLAGDFGFDPLGLGEDPE 89
S+ A +G R+ + + RP WL + + P YL G L GD+GFD GLG+DP
Sbjct: 88 NSSTFKALAGKARK--ESFWYGEDRPRWLGPISYEYPSYLTGELPGDYGFDIAGLGQDPV 145
Query: 90 SLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIREL--PVWYEAGAVEFK--------- 138
+L+ Y E++HAR+AM G L ++L + G PVW+ G + K
Sbjct: 146 ALQKYFNFEILHARWAMLASVGALIPEILDLLGAFHFVEPVWWRVGYSKLKGDTLDYLGI 205
Query: 139 ----FASTRTLFIV---QLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEP--- 188
FA ++ + ++ Q LLM E RY +E LEP
Sbjct: 206 QGLHFAGSQGVVVIAICQALLMVGPEYARY-------------------CGIEALEPLGI 246
Query: 189 ------GYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
YPGG L +PL L+ D E K+KEIKNG + +V
Sbjct: 247 YLPGDINYPGGALFDPLNLSNDPEAFEELKVKEIKNGRLAMV 288
>gi|168041250|ref|XP_001773105.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162675652|gb|EDQ62145.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 241
Score = 94.0 bits (232), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 62/173 (35%), Positives = 87/173 (50%), Gaps = 28/173 (16%)
Query: 59 WLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLL 118
WLPG P YLDG+ GDFGFDPLGLGE PE+L + ++EL+HAR+AM V G+L + L
Sbjct: 47 WLPGNPRPSYLDGSAPGDFGFDPLGLGEVPENLERFKESELIHARWAMLAVPGVLIPEAL 106
Query: 119 RVTGIRELPVWYEAGAVEFKF-------ASTRTLFIVQLLLMGFAETKRYMDYISPGSQT 171
W + + + + ++ L + FAE++R + P +
Sbjct: 107 GYGNWVSAQKWAATPGGQATYLGNPVPWGNLPVILAIEFLAIAFAESQRNGE---PDPEK 163
Query: 172 KEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
++ YPGG +PLG +K N E KLKEIKNG + LV
Sbjct: 164 RK----------------YPGG-AFDPLGFSKGA-NLEELKLKEIKNGRLALV 198
>gi|116784586|gb|ABK23400.1| unknown [Picea sitchensis]
gi|148907739|gb|ABR16996.1| unknown [Picea sitchensis]
gi|224284102|gb|ACN39788.1| unknown [Picea sitchensis]
Length = 247
Score = 94.0 bits (232), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 73/238 (30%), Positives = 106/238 (44%), Gaps = 50/238 (21%)
Query: 1 MAVAVGRGFLLQP-------SSSSSFICNDVNKSSIGITSAFLPAKSGTTRRYLATVVRA 53
MA AVG ++ P SS+ S + N S+G+ + R
Sbjct: 1 MATAVGCLHIVAPVAFAGTFSSAKSRFFSPTNSLSLGVCNG----------------SRV 44
Query: 54 QQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGIL 113
W+PG P +LDG+ GDFGFDPLGLG PE+L Y ++EL+H R+AM V G+L
Sbjct: 45 SMSAEWMPGQPRPAHLDGSAPGDFGFDPLGLGVVPENLERYKESELIHCRWAMLAVPGVL 104
Query: 114 FTDLLRVTGIRELPVWYEAG-------AVEFKFASTRTLFIVQLLLMGFAETKRYMDYIS 166
+ L + E W V + + + L M FAE++R +
Sbjct: 105 IPEALGLGNWVEAQKWAAIPGGQATYLGVPVPWGYFPIILSIFFLKMAFAESQRNGE--- 161
Query: 167 PGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
P + ++ YPGG +PLG +KD E+K+KEIKNG + L+
Sbjct: 162 PDLEKRK----------------YPGG-AFDPLGFSKDPAKFEEYKVKEIKNGRLALL 202
>gi|193875804|gb|ACF24538.1| light harvesting complex protein LHCII-3 [Gymnochlora stellata]
Length = 300
Score = 94.0 bits (232), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 65/186 (34%), Positives = 90/186 (48%), Gaps = 33/186 (17%)
Query: 54 QQRPTWLPGVDP--PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAG 111
+ RP +L P YL G GD+G+D GL DP + + Y + E++HAR+AM G G
Sbjct: 92 ENRPKYLGPFQSYTPAYLTGEFPGDYGWDSAGLSADPLTFKGYRETEVIHARWAMLGALG 151
Query: 112 ILFTDLLRVTGIRELPVWYEAGAVEFKFA-------------STRTLFIVQLLLMGFAET 158
+F +LL G LPVW++AG F+ S + VQ++LMG +E
Sbjct: 152 CIFPELLNSAGFN-LPVWFKAGGTIFENGIDYLGNPNLVHAQSALAVLSVQVVLMGASEA 210
Query: 159 KRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKN 218
R+ G G A + YPGG +PLG AKD A E K+KEIKN
Sbjct: 211 YRF-----------NGGPLGEPADVL-----YPGG-AFDPLGFAKDPSKAAELKVKEIKN 253
Query: 219 GLICLV 224
G + +
Sbjct: 254 GRLAMT 259
>gi|510388|emb|CAA43633.1| light harvesting chlorophyll a /b binding protein of PSII [Euglena
gracilis]
Length = 1055
Score = 94.0 bits (232), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 64/166 (38%), Positives = 88/166 (53%), Gaps = 13/166 (7%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI-- 123
P YL G L GD+G+D GLG DP +L Y +AE++HAR+AM G G++ +LL G+
Sbjct: 151 PSYLTGELPGDYGWDTAGLGSDPTTLARYREAEVIHARWAMLGALGVVTPELLAGNGVPF 210
Query: 124 RELPVWYEAGAVEF-----KFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFG 178
E VWY+AGA F + +L Q +++ F T M + FG
Sbjct: 211 GEGAVWYKAGAQIFSADGLNYLGNPSLIHAQSVVLTFLSTLAIMGAVEAYRYGGGVGDFG 270
Query: 179 LEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
E L+ YPGGP +PLGLA D E K+KE+KNG + +V
Sbjct: 271 RE-----LDTLYPGGP-FDPLGLANDPDALAELKVKELKNGRLAMV 310
Score = 93.2 bits (230), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 66/175 (37%), Positives = 88/175 (50%), Gaps = 31/175 (17%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI-- 123
P YL G L GD+G+D GLG DP +L Y +AE++HAR+AM G G++ +LL G+
Sbjct: 612 PSYLTGELPGDYGWDTAGLGSDPTTLARYREAEVIHARWAMLGALGVVTPELLAGNGVPF 671
Query: 124 RELPVWYEAGAVEFKFASTRTL--------------FIVQLLLMGFAETKRYMDYISPGS 169
E VWY+AGA F L F+ L +MG E RY + G
Sbjct: 672 GEGAVWYKAGAQIFSADGLNYLGNPSLIHAQSVVLTFLSTLAIMGAVEAYRYGGGV--GD 729
Query: 170 QTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
+E L+ YPGGP +PLGLA D E K+KE+KNG + +V
Sbjct: 730 SGRE------------LDTLYPGGP-FDPLGLANDPDALAELKVKELKNGRLAMV 771
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 65/179 (36%), Positives = 87/179 (48%), Gaps = 15/179 (8%)
Query: 55 QRPTWLPGVDP--PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGI 112
R WL G P YL G L GD+G+D GLG DP L Y A+++H R+AM GV G
Sbjct: 841 DRVKWLGGFTGFVPEYLTGELPGDYGWDTAGLGADPAKLARYRVAQVIHGRWAMLGVLGC 900
Query: 113 LFTDLLRVTGIREL--PVWYEAGAVEF-----KFASTRTLFIVQLLLMGFAETKRYMDYI 165
F + + G PVW++AGA F + L Q +++ F T M +
Sbjct: 901 WFPECINRWGGVPFGEPVWFKAGAQIFSEDGLNYLGQPGLIHAQSVVLTFLSTLVLMGAV 960
Query: 166 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
FG + L+P YPGGP +PLGLA D E K+KE+KNG + +V
Sbjct: 961 EAYRSAGSVGDFGAD-----LDPLYPGGP-FDPLGLADDPEAFLELKVKEVKNGRLAMV 1013
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 75/245 (30%), Positives = 109/245 (44%), Gaps = 37/245 (15%)
Query: 1 MAVAVGRGFLLQPSSSS-------SFICNDVNKSSI-GITSAFLPAKSGTTRRYLATVVR 52
+A+ GF +QP + +F D + ++I TS F + ++ Y
Sbjct: 307 LAMVAMLGFYVQPLVTKAGPVENLTFHLADPSANNIFSFTSGFAMFAATGSKWY------ 360
Query: 53 AQQRPTWL---PGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGV 109
RP WL G P YL G AGD+GFD GL DP+ + Y AEL + R+AM GV
Sbjct: 361 GPNRPKWLGPLSGGAVPEYLKGEYAGDYGFDTAGLAADPKLFQRYRDAELQNGRWAMLGV 420
Query: 110 AGILFTDLL-RVTGI-RELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISP 167
G L ++L V G+ PVW++ GA S L +L+ + +
Sbjct: 421 LGCLAPEVLSNVFGVPYPEPVWFKTGATILNGGSIDYLANPKLI---------HASNLLL 471
Query: 168 GSQTKEGSFFGLEAALEGLE--------PGYPGGPLLNPLGLAKDIRNAREWKLKEIKNG 219
+ FF E E E YPGG + +PLGL+KD E K+KE+KNG
Sbjct: 472 TLVLELVFFFAAETWREAGEGPLGKAQDKSYPGG-VFDPLGLSKDPAAFAEAKVKEVKNG 530
Query: 220 LICLV 224
+ ++
Sbjct: 531 RLAML 535
Score = 43.9 bits (102), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 41/79 (51%), Gaps = 15/79 (18%)
Query: 146 FIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDI 205
F+ L+LMG E R S GS G+ L+P YPGGP +PLGLA D
Sbjct: 10 FLSTLVLMGAVEAYR-----SAGSVGDFGA---------DLDPLYPGGPF-DPLGLADDP 54
Query: 206 RNAREWKLKEIKNGLICLV 224
E K+KE+KNG + +V
Sbjct: 55 EAFLELKVKEVKNGRLAMV 73
>gi|407971012|ref|NP_001234032.1| chlorophyll a-b binding protein 6A, chloroplastic [Solanum
lycopersicum]
gi|115764|sp|P12360.1|CB11_SOLLC RecName: Full=Chlorophyll a-b binding protein 6A, chloroplastic;
AltName: Full=LHCI type I CAB-6A; AltName:
Full=Light-harvesting complex I 26 kDa protein; Flags:
Precursor
gi|170494|gb|AAA34186.1| chlorophyll a/b binding protein precursor [Solanum lycopersicum]
Length = 246
Score = 93.6 bits (231), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 67/212 (31%), Positives = 99/212 (46%), Gaps = 31/212 (14%)
Query: 20 ICNDVNKSSIGITSAFLPAKSGTTRRYLATVVRAQQRPTWLPGVDPPPYLDGTLAGDFGF 79
+C S+ +A +P G T + R W+PG P YLDG+ GDFGF
Sbjct: 14 VCPSFLSSTKSKFAAAMPVYVGATN----FMSRFSMSADWMPGQPRPSYLDGSAPGDFGF 69
Query: 80 DPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVW--YEAGAVEF 137
D LGLGE P +L Y ++EL+H R+AM V GI+ + L + + W G +
Sbjct: 70 DSLGLGEVPANLERYKESELIHCRWAMLAVPGIIVPEALGLGNWVKAQEWAAIPGGQATY 129
Query: 138 -----KFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPG 192
+ + T+ ++ L + F E +R M+ S+ K+ YPG
Sbjct: 130 LGQPVPWGTLPTILAIEFLAIAFVEHQRSMEK---DSEKKK----------------YPG 170
Query: 193 GPLLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
G +PLG +KD E K+KEIKNG + L+
Sbjct: 171 G-AFDPLGYSKDPAKFEELKVKEIKNGRLALL 201
>gi|125555124|gb|EAZ00730.1| hypothetical protein OsI_22755 [Oryza sativa Indica Group]
Length = 241
Score = 93.6 bits (231), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 63/208 (30%), Positives = 100/208 (48%), Gaps = 30/208 (14%)
Query: 27 SSIGITSAFLPAKSGT---TRRYLATVVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLG 83
S++G+ S P+ + + Y T R W+PG P +LDG+ GDFGFDPLG
Sbjct: 10 SAVGVPSLLAPSSNRSRLPVCAYATTSGRVTMSAEWMPGQPRPAHLDGSSPGDFGFDPLG 69
Query: 84 LGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVW-YEAGAVE------ 136
L PE+ + ++E+ H R+AM V G+L + L + + W E G
Sbjct: 70 LATVPENFERFKESEVYHCRWAMLAVPGVLVPEALGLGNWVQAQEWAAEPGGQATYLGNP 129
Query: 137 FKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLL 196
+ + T+ +++ + + FAE +R M+ + K+ YPGG
Sbjct: 130 VPWGTLPTILVIEFVAIAFAEHQRTMEK---DPEKKK----------------YPGG-AF 169
Query: 197 NPLGLAKDIRNAREWKLKEIKNGLICLV 224
+PLG +KD E+KLKEIKNG + ++
Sbjct: 170 DPLGFSKDPVKFEEYKLKEIKNGRLAML 197
>gi|384253059|gb|EIE26534.1| chlorophyll a/b-binding protein P25 [Coccomyxa subellipsoidea
C-169]
Length = 234
Score = 93.6 bits (231), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 68/187 (36%), Positives = 88/187 (47%), Gaps = 33/187 (17%)
Query: 54 QQRPTWLP--GVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAG 111
+ RP WL + P YL G GD+G+D GL DPE+ Y + E++HAR+AM G G
Sbjct: 22 EDRPKWLGPFSGNTPSYLSGEYPGDYGWDTAGLSADPETFAKYREIEVIHARWAMLGALG 81
Query: 112 ILFTDLLRVTGIR-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFA 156
L +LL G+ VW++AGA F S + Q+LLMG
Sbjct: 82 CLTPELLAKNGVSFGEAVWWKAGAQIFAPGGLDYLGNPSLVHAQSIIAILASQVLLMGAI 141
Query: 157 ETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEI 216
E R Y PG EGL+ YPGG +PLGLA D E K+KEI
Sbjct: 142 EGYRV--YGGPGG--------------EGLDKVYPGGDYFDPLGLADDPDTFAELKVKEI 185
Query: 217 KNGLICL 223
KNG + +
Sbjct: 186 KNGRLAM 192
>gi|359754917|gb|AEV59648.1| chloroplast photosystem II light harvesting complex protein type
III, partial [Oxytropis arctobia]
Length = 198
Score = 93.2 bits (230), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 70/198 (35%), Positives = 95/198 (47%), Gaps = 32/198 (16%)
Query: 14 SSSSSFICNDVNKSSIGITSAFLPAKSGTTRRYLATVVRAQ-----------QRPTWLPG 62
SSSS + K S G S P S R + +V+A RP W
Sbjct: 5 SSSSLTFSAEAVKQSFGARS---PQSSFAFSRKGSFIVKAASTPPVKQGAGANRPLWFAS 61
Query: 63 VDPPPYLDGTLAGDFGFDPLGLGEDPESL------RWYVQAELVHARFAMAGVAGILFTD 116
YLDG+L GD+GFDPLGL DPE RW E+++ RFAM G AG + +
Sbjct: 62 EQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPRWLAYGEIINGRFAMLGAAGAIAPE 120
Query: 117 LLRVTGI----RELPVWYEAGAVE-----FKFASTRTLFIVQLLLMGFAETKRYMDYISP 167
+L G+ LP W++ G + +A TLF++++ LMGFAE + D+ +P
Sbjct: 121 ILGKAGLIPEETALP-WFQTGVIPPAGTYNYWADNYTLFVLEMALMGFAEHRXLQDWYNP 179
Query: 168 GSQTKEGSFFGLEAALEG 185
GS K+ F GLE L G
Sbjct: 180 GSMGKQ-YFLGLEKGLGG 196
>gi|115467828|ref|NP_001057513.1| Os06g0320500 [Oryza sativa Japonica Group]
gi|3789954|gb|AAC67558.1| chlorophyll a/b-binding protein precursor [Oryza sativa Japonica
Group]
gi|54290899|dbj|BAD61582.1| chlorophyll a/b-binding protein precursor [Oryza sativa Japonica
Group]
gi|113595553|dbj|BAF19427.1| Os06g0320500 [Oryza sativa Japonica Group]
gi|125597037|gb|EAZ36817.1| hypothetical protein OsJ_21156 [Oryza sativa Japonica Group]
gi|215686348|dbj|BAG87609.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215704347|dbj|BAG93781.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 241
Score = 93.2 bits (230), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 63/208 (30%), Positives = 100/208 (48%), Gaps = 30/208 (14%)
Query: 27 SSIGITSAFLPAKSGT---TRRYLATVVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLG 83
S++G+ S P+ + + Y T R W+PG P +LDG+ GDFGFDPLG
Sbjct: 10 SAVGVPSLLAPSSNRSRLPVCAYATTSGRVTMSAEWMPGQPRPAHLDGSSPGDFGFDPLG 69
Query: 84 LGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVW-YEAGAVE------ 136
L PE+ + ++E+ H R+AM V G+L + L + + W E G
Sbjct: 70 LATVPENFERFKESEVYHCRWAMLAVPGVLVPEALGLGNWVQAQEWAAEPGGQATYLGNP 129
Query: 137 FKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLL 196
+ + T+ +++ + + FAE +R M+ + K+ YPGG
Sbjct: 130 VPWGTLPTILVIEFVAIAFAEHQRTMEK---DPEKKK----------------YPGG-AF 169
Query: 197 NPLGLAKDIRNAREWKLKEIKNGLICLV 224
+PLG +KD E+KLKEIKNG + ++
Sbjct: 170 DPLGFSKDPVKFEEYKLKEIKNGRLAML 197
>gi|255070015|ref|XP_002507089.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas sp. RCC299]
gi|226522364|gb|ACO68347.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas sp. RCC299]
Length = 227
Score = 93.2 bits (230), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 60/179 (33%), Positives = 95/179 (53%), Gaps = 32/179 (17%)
Query: 52 RAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAG 111
+ R TW+PG PP YLDG++ D+GFDPLGLG++P++L + +AEL+HAR+AM GV+G
Sbjct: 32 KVSMRATWMPGSAPPSYLDGSMPCDYGFDPLGLGKEPDNLARFQEAELIHARWAMLGVSG 91
Query: 112 ILFTDLLRVTGIR--ELPVW----YEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 165
++ +TGI E PV Y + F + + +++ +M + E+KR
Sbjct: 92 AAGAEI--ITGINWVEAPVQSQQTYLGNTIPFPLPA---IAAIEVFVMAYVESKR----- 141
Query: 166 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
GS+T YPGG +P G +K + + K KE+ NG + ++
Sbjct: 142 --GSETDRSKRM------------YPGG-AFDPAGFSKGA-DFEKLKRKELANGRVAML 184
>gi|149392115|gb|ABR25924.1| chloroplast chlorophyll a-b binding protein 8 [Oryza sativa Indica
Group]
Length = 191
Score = 93.2 bits (230), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 59/144 (40%), Positives = 82/144 (56%), Gaps = 13/144 (9%)
Query: 92 RWYVQAELVHARFAMAGVAGILFTDLLRVTGI----RELPVWYEAGAVE-----FKFAST 142
RW E+ + R AM GV G++ +LL G+ +P W++ G + +A
Sbjct: 11 RWLAYGEVFNGRTAMMGVVGMVAPELLGKLGLVPAETAIP-WFQTGVIPPAGTYTYWADP 69
Query: 143 RTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGL-EPGYPGGPLLNPLGL 201
TLF+ +L L+GFAE +R+ D+ +PGS K+ F GLE L G EP YPGGPL NPLG
Sbjct: 70 YTLFVFELALVGFAEHRRFQDWYTPGSMGKQ-YFLGLEKYLAGSGEPAYPGGPLFNPLGF 128
Query: 202 A-KDIRNAREWKLKEIKNGLICLV 224
K +E KLKEIKNG + ++
Sbjct: 129 GTKSEAEMKELKLKEIKNGRLAML 152
>gi|145332845|ref|NP_001078288.1| light-harvesting complex I chlorophyll a/b binding protein 1
[Arabidopsis thaliana]
gi|332645787|gb|AEE79308.1| light-harvesting complex I chlorophyll a/b binding protein 1
[Arabidopsis thaliana]
Length = 213
Score = 93.2 bits (230), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 62/178 (34%), Positives = 86/178 (48%), Gaps = 27/178 (15%)
Query: 49 TVVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAG 108
V R + W+PG P YLDG+ GDFGFDPLGLGE P +L Y ++EL+H R+AM
Sbjct: 38 NVGRIRMAAHWMPGEPRPAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLA 97
Query: 109 VAGILFTDLLRVTGIRELPVW--YEAGAVEF-----KFASTRTLFIVQLLLMGFAETKRY 161
V GIL + L + W G + + + T+ ++ L + F E +R
Sbjct: 98 VPGILVPEALGYGNWVKAQEWAALPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRS 157
Query: 162 MDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNG 219
M+ P + YPGG +PLG +KD + E K+KEIKNG
Sbjct: 158 MEK-DPEKKK------------------YPGG-AFDPLGYSKDPKKLEELKVKEIKNG 195
>gi|359754927|gb|AEV59653.1| chloroplast photosystem II light harvesting complex protein type
III, partial [Oxytropis campestris subsp. johannensis]
Length = 197
Score = 93.2 bits (230), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 70/198 (35%), Positives = 95/198 (47%), Gaps = 32/198 (16%)
Query: 14 SSSSSFICNDVNKSSIGITSAFLPAKSGTTRRYLATVVRAQ-----------QRPTWLPG 62
SSSS + K S G S P S R + +V+A RP W
Sbjct: 1 SSSSLTFSAEAVKQSFGARS---PQSSFAFSRKGSFIVKAASTPPVKQGAGANRPLWFAS 57
Query: 63 VDPPPYLDGTLAGDFGFDPLGLGEDPESL------RWYVQAELVHARFAMAGVAGILFTD 116
YLDG+L GD+GFDPLGL DPE RW E+++ RFAM G AG + +
Sbjct: 58 EQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPRWLAYGEIINGRFAMLGAAGAIAPE 116
Query: 117 LLRVTGI----RELPVWYEAGAVE-----FKFASTRTLFIVQLLLMGFAETKRYMDYISP 167
+L G+ LP W++ G + +A TLF++++ LMGFAE + D+ +P
Sbjct: 117 ILGKAGLIPEETALP-WFQTGVIPPAGTYNYWADNYTLFVLEMALMGFAEHRXLQDWYNP 175
Query: 168 GSQTKEGSFFGLEAALEG 185
GS K+ F GLE L G
Sbjct: 176 GSMGKQ-YFLGLEKGLGG 192
>gi|20790|emb|CAA41405.1| Type 1 chlorophyll a /b-binding protein [Pinus sylvestris]
Length = 207
Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 60/180 (33%), Positives = 88/180 (48%), Gaps = 27/180 (15%)
Query: 52 RAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAG 111
R W+PG PP+LDG+ GDFGFDPL LG PE+L Y ++EL+H R+AM V G
Sbjct: 3 RVSMSAEWMPGQPRPPHLDGSAPGDFGFDPLRLGVIPENLERYKESELIHCRWAMLAVPG 62
Query: 112 ILFTDLLRVTGIRELPVWYEAG-------AVEFKFASTRTLFIVQLLLMGFAETKRYMDY 164
+L + L + E W V + + V+ L + F E++R +
Sbjct: 63 MLIPEALGLGNWVEAQKWAAIPGSQATYFGVPVPWGYLPIVLAVEFLAIAFVESQRNGE- 121
Query: 165 ISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
P + ++ YPGG +PLG +KD +E+K+KEIKNG + L+
Sbjct: 122 --PDPEKRK----------------YPGG-AFDPLGFSKDPVKFKEYKVKEIKNGRLALL 162
>gi|406362893|gb|AFS34654.1| chloroplast chlorophyll a-b binding protein, partial [Leymus
secalinus]
Length = 189
Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 57/144 (39%), Positives = 85/144 (59%), Gaps = 13/144 (9%)
Query: 92 RWYVQAELVHARFAMAGVAGILFTDLLRVTGI----RELPVWYEAGAV----EFKF-AST 142
RW E+ + R AM GV G++ + L G+ +P W++AGA+ +++ A
Sbjct: 9 RWLAYGEIFNGRTAMMGVVGMIAPEALGKVGLVPPETAIP-WFQAGAIPPAGTYQYWADP 67
Query: 143 RTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGL-EPGYPGGPLLNPLGL 201
TLF+ ++ L+GFAE +R D+ +PGS K+ F GLE L G +P YPGGP+ NPLG
Sbjct: 68 YTLFVFEMALIGFAEHRRLQDWYNPGSMGKQ-YFLGLEKYLGGSGDPAYPGGPIFNPLGF 126
Query: 202 A-KDIRNAREWKLKEIKNGLICLV 224
K + +E KLKEIKNG + ++
Sbjct: 127 GTKSEKEMKELKLKEIKNGRLAML 150
>gi|459020|gb|AAA16605.1| light harvesting chlorophyll a/b binding protein of PSII, partial
[Euglena gracilis]
Length = 322
Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 64/162 (39%), Positives = 88/162 (54%), Gaps = 16/162 (9%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR- 124
P YL G L GD+G+D GLG DP +L Y +AE++HAR+AM G G++ +LL G+
Sbjct: 169 PAYLTGELPGDYGWDTAGLGADPVTLARYREAEVIHARWAMLGALGVVTPELLAGNGVPF 228
Query: 125 -ELPVWYEAGAVEF-----KFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFG 178
E VWY+AGA F + +L Q +++ F T M + EG +G
Sbjct: 229 GEGAVWYKAGAQIFSADGLNYLGNPSLIHAQSVVLTFLSTLAIMGAV-------EGYRYG 281
Query: 179 LEAAL-EGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNG 219
L + L+ YPGGP +PLGLA D E K+KE+KNG
Sbjct: 282 GGWPLGDDLDRLYPGGP-FDPLGLANDPDAFAELKVKEVKNG 322
>gi|19423285|gb|AAL88456.1|AF479777_1 major light-harvesting complex II protein m10 [Chlamydomonas
reinhardtii]
Length = 256
Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 76/228 (33%), Positives = 102/228 (44%), Gaps = 55/228 (24%)
Query: 34 AFLPAKSGTTRRYLATVVRAQQRPTWLPGV-----------------------DPPPYLD 70
AF AKS R LA+ V+ + R T P +PP YL
Sbjct: 2 AFALAKSSLAPRCLASTVKVEARRTVKPASKASTPDSFWYGPERPLFLGAFTGEPPSYLT 61
Query: 71 GTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR-ELPVW 129
G GD+G+D GL DPE+ + Y + EL+HAR+AM G G + +LL +G + VW
Sbjct: 62 GEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCITPELLAKSGTQFGEAVW 121
Query: 130 YEAGAVEFKFASTRTL--------------FIVQLLLMGFAETKRYMDYISPGSQTKEGS 175
++AGA F L VQ++LMG E R ++ G
Sbjct: 122 FKAGAQIFSEGGLDYLGNPSLVHAQNIVATLAVQVILMGLVEGYR----VNGGP------ 171
Query: 176 FFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
A EGL+P YP G +PLGLA D E K+KEIKNG + +
Sbjct: 172 ------AGEGLDPLYP-GESFDPLGLADDPDTFAELKVKEIKNGRLAM 212
>gi|414884910|tpg|DAA60924.1| TPA: hypothetical protein ZEAMMB73_235289 [Zea mays]
Length = 315
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 67/199 (33%), Positives = 92/199 (46%), Gaps = 48/199 (24%)
Query: 55 QRPTWLPGV--DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGI 112
RP WL V D P YL G GD+GFD GLG DP + Y E++H R+AM G+
Sbjct: 99 DRPRWLGPVPYDYPEYLTGEYPGDYGFDIAGLGRDPVAFANYFNFEILHCRWAMLAALGV 158
Query: 113 LFTDLLRVTGIREL--PVWYEAGAVE-------------FKFASTRTLFIV---QLLLMG 154
+ +LL + G+ PVW++ G + F+ A + + ++ Q LLM
Sbjct: 159 VVPELLDLFGLVHFVEPVWWKVGYAKLQGDNLDYLGIPGFRIAGGQGVVVIAICQALLMV 218
Query: 155 FAETKRYMDYISPGSQTKEGSFFGLEAALEGLEP---------GYPGGPLLNPLGLAKDI 205
E RY +E LEP YPGGPL +PLGL+KD
Sbjct: 219 GPEYARY-------------------CGIEALEPLGIYLPGDINYPGGPLFDPLGLSKDP 259
Query: 206 RNAREWKLKEIKNGLICLV 224
+ K+KEIKNG + +V
Sbjct: 260 VAFEDLKVKEIKNGRLAMV 278
>gi|87313211|gb|ABD37902.1| light-harvesting chlorophyll-a/b binding protein LhcbM5
[Acutodesmus obliquus]
Length = 250
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 66/177 (37%), Positives = 89/177 (50%), Gaps = 16/177 (9%)
Query: 55 QRPTWLP--GVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGI 112
+R WL + P YL G AGD+G+D GL DPE+ R Y + EL+HAR+AM G G
Sbjct: 44 ERAKWLGPFSTNTPGYLTGEFAGDYGWDTAGLSADPETFRRYRELELIHARWAMLGALGC 103
Query: 113 LFTDLLRVTGIR-ELPVWYEAGAVEFK-----FASTRTLFIVQLLLMGFAETKRYMDYIS 166
+ +LL G+ VW++AGA F+ + +L Q +L A M +
Sbjct: 104 ITPELLAKNGVPFGEAVWFKAGAQIFQEGGLNYLGNSSLIHAQSILATLACQVILMGLV- 162
Query: 167 PGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
EG A EGL+P YP G +PLGLA D E K+KEIKNG + +
Sbjct: 163 ------EGYRVNGGPAGEGLDPLYP-GEAFDPLGLADDPDTFAELKVKEIKNGRLAM 212
>gi|115826|sp|P22686.1|CB2_CHLMO RecName: Full=Chlorophyll a-b binding protein of LHCII type I,
chloroplastic; Short=CAB; Short=LHCP; Flags: Precursor
gi|18063|emb|CAA38635.1| chlorophyll a/b-binding protein [Chlamydomonas moewusii]
Length = 256
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 73/208 (35%), Positives = 97/208 (46%), Gaps = 41/208 (19%)
Query: 37 PAKSGTTRRYLATVVRAQQRPTWLP--GVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWY 94
PAKS Y R WL + P YL G GD+G+D GL DPE+ + Y
Sbjct: 31 PAKSAGIEWY------GPDRAKWLGPFSTNTPAYLTGEFPGDYGWDTAGLSADPETFKKY 84
Query: 95 VQAELVHARFAMAGVAGILFTDLLRV-TGIR-ELPVWYEAGAVEFKFASTRTL------- 145
+ E++HAR+A+ G GIL +LL G++ PVW++AGA F L
Sbjct: 85 RELEVIHARWALLGALGILTPELLSTYAGVKFGEPVWFKAGAQIFSEGGLDYLGSPALIH 144
Query: 146 -------FIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNP 198
VQ++LMG E R ++ G A EGL+P YP G +P
Sbjct: 145 AQNIVATLAVQVVLMGLIEGYR----VNGGP------------AGEGLDPLYP-GESFDP 187
Query: 199 LGLAKDIRNAREWKLKEIKNGLICLVLC 226
LGLA D E K+KEIKNG + + C
Sbjct: 188 LGLADDPDTFAELKVKEIKNGRLAMFSC 215
>gi|224083380|ref|XP_002307004.1| light-harvesting complex II protein Lhcb7 [Populus trichocarpa]
gi|222856453|gb|EEE94000.1| light-harvesting complex II protein Lhcb7 [Populus trichocarpa]
Length = 338
Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 66/200 (33%), Positives = 93/200 (46%), Gaps = 48/200 (24%)
Query: 54 QQRPTWLPGV--DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAG 111
++RP WL + P YL G L GD+GFD GL EDP + + Y E++HAR+AM G
Sbjct: 119 EERPRWLGPISYQYPTYLSGELPGDYGFDVAGLAEDPVAFQRYFNFEILHARWAMLAALG 178
Query: 112 ILFTDLLRVTGIREL--PVWYEAGAVEFK-------------FASTRTLFIV---QLLLM 153
L ++L ++G PVW+ G + K FA + + ++ Q +LM
Sbjct: 179 ALIPEVLDLSGAFHFIEPVWWRVGYSKLKGDTLDYLGIPGLHFAGGQGVLVIAFCQAILM 238
Query: 154 GFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEP---------GYPGGPLLNPLGLAKD 204
E RY +E LEP YPGG L +PL L+KD
Sbjct: 239 VGPEYARY-------------------CGIEALEPLGIYLPGDINYPGGILFDPLNLSKD 279
Query: 205 IRNAREWKLKEIKNGLICLV 224
+ E K+KEIKNG + +V
Sbjct: 280 PVSFEELKVKEIKNGRLAMV 299
>gi|449525738|ref|XP_004169873.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic-like [Cucumis sativus]
Length = 338
Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 63/184 (34%), Positives = 91/184 (49%), Gaps = 16/184 (8%)
Query: 54 QQRPTWLPGV--DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAG 111
++RP WL + D P YL G L GD+GFD GL EDP + + + E++HAR+AM G
Sbjct: 116 EERPRWLGPLPYDYPKYLTGELPGDYGFDIAGLSEDPVAFQKFFNFEILHARWAMLASLG 175
Query: 112 ILFTDLLRVTGIREL--PVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGS 169
L ++L + G P+W+ G + K + L I L L G ++ + +
Sbjct: 176 ALVPEILDIFGAFHFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAG---SQGVIVIAICQA 232
Query: 170 QTKEGSFFGLEAALEGLEP---------GYPGGPLLNPLGLAKDIRNAREWKLKEIKNGL 220
G + +E LEP YPGG L +PL L+KD E K+KEIKNG
Sbjct: 233 ILMVGPEYARYCGIEALEPLGIYLPGDINYPGGVLFDPLNLSKDAEAFEELKVKEIKNGR 292
Query: 221 ICLV 224
+ +V
Sbjct: 293 LAMV 296
>gi|333691283|gb|AEF79974.1| chloroplast minor chlorophyll a-b binding protein of photosystem II
[Dunaliella salina]
Length = 283
Score = 90.9 bits (224), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 70/197 (35%), Positives = 97/197 (49%), Gaps = 35/197 (17%)
Query: 55 QRPTWLPG-----VDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGV 109
+R +LPG D P YL+G LAGD+G+DPLGLG+D E + Y EL+HAR+AM
Sbjct: 50 ERKLFLPGGLLDRDDVPEYLNGELAGDYGYDPLGLGKDEEQVEKYRANELLHARWAMLAA 109
Query: 110 AGILFTDLLRVTGIR-ELPVWYEAGAVEFKFASTRTLF-----------------IVQLL 151
AGIL + L+ G + W+E GA E T F +++++
Sbjct: 110 AGILIPEGLQANGADIKGGTWFETGA-EMLNGGTLNYFAVPFGVVQNPLPLAAVTLIEIV 168
Query: 152 LMGFAETKRYMDY----ISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRN 207
L+G E R SPG + F +GL+ YPGGP +PL LA D
Sbjct: 169 LLGAVEKFRVDGTGPAGFSPGVGKFDSDIF------DGLDQLYPGGP-FDPLNLADDPEV 221
Query: 208 AREWKLKEIKNGLICLV 224
E ++KE KNG + +V
Sbjct: 222 FAELQVKETKNGRLAMV 238
>gi|11066109|gb|AAG28464.1|AF195794_1 chlorophyll A-B binding protein of LHCI [Chlamydomonas reinhardtii]
Length = 239
Score = 90.9 bits (224), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 68/207 (32%), Positives = 95/207 (45%), Gaps = 34/207 (16%)
Query: 28 SIGITSAFLPAKSGTTRRYLATVVRAQ----QRPTWLPGVDPPPYLDGTLAGDFGFDPLG 83
S+ SA A G + R +A V + WLPG D P +L L G++GFDPL
Sbjct: 4 SMRTLSARTAAPRGFSGRRVAAVSNGSRVTMKAGNWLPGSDAPAWLPDDLPGNYGFDPLS 63
Query: 84 LGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAG------AVEF 137
LG++P SL+ + ++E++H R+AM GVAG L +LL + P+W G +E
Sbjct: 64 LGKEPASLKRFTESEVIHGRWAMLGVAGSLAVELLGYGNWYDAPLWAVNGGKATWFGIEV 123
Query: 138 KFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLN 197
F L + + M AE +R PGG +
Sbjct: 124 PF-DLNALLAFEFVAMAAAEGQRRRCRRR----------------------RLPGG-AFD 159
Query: 198 PLGLAKDIRNAREWKLKEIKNGLICLV 224
PLG AKD + E KLKEIKNG + +V
Sbjct: 160 PLGFAKDSSKSGELKLKEIKNGRLAMV 186
>gi|302854015|ref|XP_002958519.1| hypothetical protein VOLCADRAFT_110088 [Volvox carteri f.
nagariensis]
gi|300256166|gb|EFJ40439.1| hypothetical protein VOLCADRAFT_110088 [Volvox carteri f.
nagariensis]
Length = 270
Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 70/193 (36%), Positives = 96/193 (49%), Gaps = 19/193 (9%)
Query: 40 SGTTRRYLATVVRAQQRPTWLPGVD--PPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQA 97
+GT+ R + +R WL + P YL G GD+G+D GL DPE+ + Y +
Sbjct: 44 NGTSERL--SQFYGPERALWLGPLSGSAPSYLTGEFPGDYGWDSAGLSSDPETFKRYREL 101
Query: 98 ELVHARFAMAGVAGILFTDLLRVTG--IRELPVWYEAGAVEFK-----FASTRTLFIVQL 150
EL+HAR+AM G G + +LL G I E PVW++AGA F+ + L Q
Sbjct: 102 ELIHARWAMLGALGCVTPELLAKNGTPIAE-PVWFKAGAQIFQEGGLDYLGNPGLVHAQS 160
Query: 151 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 210
+L A M I EG A EGL+ +PGGP +PL LA+D E
Sbjct: 161 ILATLACQVILMGAI-------EGFRVNGGPAGEGLDKLHPGGPWFDPLALAEDPDAFAE 213
Query: 211 WKLKEIKNGLICL 223
K+KEIKNG + +
Sbjct: 214 LKVKEIKNGRLAM 226
>gi|168041643|ref|XP_001773300.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162675342|gb|EDQ61838.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 198
Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 62/173 (35%), Positives = 84/173 (48%), Gaps = 28/173 (16%)
Query: 59 WLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLL 118
WLPG P YLDG+ GDFGFDPLGLGE PE+L + ++EL+HAR+AM + G+L + L
Sbjct: 4 WLPGNPRPSYLDGSAPGDFGFDPLGLGEVPENLERFKESELIHARWAMLAIPGVLIPEAL 63
Query: 119 RVTGIRELPVWYEAGAVEFKF-------ASTRTLFIVQLLLMGFAETKRYMDYISPGSQT 171
W + + + + V+ + + F E++R G
Sbjct: 64 GYGNWVSAQKWAATPGGQATYLGNPVPWGNLPIILAVEFIAIAFVESQRN------GESD 117
Query: 172 KEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
E YPGGP +PLG +K N E KLKEIKNG + LV
Sbjct: 118 PEKR-------------KYPGGP-FDPLGFSKGA-NLEELKLKEIKNGRLALV 155
>gi|145079374|tpg|DAA05912.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca2 [Acetabularia acetabulum]
Length = 229
Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 59/166 (35%), Positives = 84/166 (50%), Gaps = 30/166 (18%)
Query: 59 WLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLL 118
W PG PP +LD T+ GD+GFDPL LG + E L WY +AEL + R+AM VAGILFTD
Sbjct: 45 WYPGATPPAHLDSTMPGDYGFDPLRLGTNTELLPWYREAELTNGRWAMMAVAGILFTDAF 104
Query: 119 RVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFG 178
LP ++ AGA ++ L +++ LM E +R+ + +T + F
Sbjct: 105 ------GLPKFWLAGAEKYAIGFA-PLVAIEIALMAVLEYQRFKGW----KETGKSGFLA 153
Query: 179 LEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
+P +PL +A D E KEIKNG + ++
Sbjct: 154 F----------FP----FDPLNMASD-----EMAFKEIKNGRLAMI 180
>gi|449455655|ref|XP_004145567.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic-like [Cucumis sativus]
Length = 338
Score = 90.5 bits (223), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 63/184 (34%), Positives = 91/184 (49%), Gaps = 16/184 (8%)
Query: 54 QQRPTWLPGV--DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAG 111
++RP WL + D P YL G L GD+GFD GL EDP + + + E++HAR+AM G
Sbjct: 116 EERPRWLGPLPYDYPKYLTGELPGDYGFDIAGLSEDPVAFQKFFNFEILHARWAMLASLG 175
Query: 112 ILFTDLLRVTGIREL--PVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGS 169
L ++L + G P+W+ G + K + L I L L G ++ + +
Sbjct: 176 ALVPEILDIFGAFHFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAG---SQGVIVIAICQA 232
Query: 170 QTKEGSFFGLEAALEGLEP---------GYPGGPLLNPLGLAKDIRNAREWKLKEIKNGL 220
G + +E LEP YPGG L +PL L+KD E K+KEIKNG
Sbjct: 233 ILMVGPEYARYCGIEALEPLGIYLPGDINYPGGVLFDPLNLSKDAAAFEELKVKEIKNGR 292
Query: 221 ICLV 224
+ +V
Sbjct: 293 LAMV 296
>gi|326498823|dbj|BAK02397.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326508330|dbj|BAJ99432.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 310
Score = 90.5 bits (223), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 66/198 (33%), Positives = 93/198 (46%), Gaps = 48/198 (24%)
Query: 56 RPTWLPGV--DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGIL 113
RP WL + D P +L G GD+GFD GLG DP + Y E++H R+AM G++
Sbjct: 95 RPRWLGPLRYDYPEHLAGEFPGDYGFDIAGLGRDPVAFANYFNFEILHCRWAMLAALGVV 154
Query: 114 FTDLLRVTGIREL--PVWYEAGAVE-------------FKFASTRTLFIV---QLLLMGF 155
+LL + GI PVW++ G + F+ A + + ++ Q+LLM
Sbjct: 155 VPELLDLFGIVHFVEPVWWKVGYAKLQGDTLDYLGIPGFRIAGGQGIIVIAICQVLLMVG 214
Query: 156 AETKRYMDYISPGSQTKEGSFFGLEAALEGLEP---------GYPGGPLLNPLGLAKDIR 206
E RY +E LEP YPGG L +PLGL+KD
Sbjct: 215 PEYARY-------------------CGIEALEPLGIYLPGDINYPGGALFDPLGLSKDPV 255
Query: 207 NAREWKLKEIKNGLICLV 224
E+K+KEIKNG + +V
Sbjct: 256 AFEEFKVKEIKNGRLAMV 273
>gi|187609488|gb|ACD13267.1| chlorophyll a/b binding protein precursor [Phyllostachys
fimbriligula]
Length = 204
Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 86/186 (46%), Gaps = 27/186 (14%)
Query: 46 YLATVVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFA 105
Y T R W PG P +LDG+ GDFGFDPLGLG PE+ + ++E+ H R+A
Sbjct: 5 YATTSGRVTMSAEWFPGQPRPAHLDGSSPGDFGFDPLGLGTVPENFERFKESEVYHCRWA 64
Query: 106 MAGVAGILFTDLLRVTGIRELPVWYEAG-------AVEFKFASTRTLFIVQLLLMGFAET 158
M V G+L + L + + W V + + T+ ++ + + FAE
Sbjct: 65 MLCVPGVLVPEALGLGNWVKAQEWAAVPGGQATYFGVPVPWGNLPTILAIEFVAIAFAEH 124
Query: 159 KRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKN 218
+R M+ + YPGG +PLG +KD E+KLKEIKN
Sbjct: 125 QRTMEKDPEKKK-------------------YPGG-AFDPLGFSKDPVKFEEYKLKEIKN 164
Query: 219 GLICLV 224
G + ++
Sbjct: 165 GRLAML 170
>gi|225690802|gb|ACO06087.1| chlorophyll a-b binding protein [Triticum aestivum]
Length = 291
Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 69/234 (29%), Positives = 106/234 (45%), Gaps = 37/234 (15%)
Query: 3 VAVGRGFLLQPSSSSSFICNDVNKSSIGITSAFLPA-KSGTTR----RYLATVVRAQQRP 57
++ R + SSS C S++G+ S P+ +SG + Y T R
Sbjct: 17 ASIERATMAMASSSGLRSC-----SAVGVPSLLAPSSRSGRSGLPFCAYATTSGRVTMSA 71
Query: 58 TWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDL 117
W PG P +LDG+ GDFGFDPLGL PE+ + ++E+ H R+AM V G+L +
Sbjct: 72 EWFPGQPRPAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEA 131
Query: 118 LRVTGIRELPVW--YEAGAVEF-----KFASTRTLFIVQLLLMGFAETKRYMDYISPGSQ 170
L + + W G + + + T+ ++ L + FAE +R M+
Sbjct: 132 LGLGNWVKAQEWAALPDGQATYLGNPVPWGNLPTILAIEFLAIAFAEQQRTMEK------ 185
Query: 171 TKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
+ + YPGG +PLG +KD E KLKEIKNG + ++
Sbjct: 186 -------------DPEKKKYPGG-AFDPLGFSKDPAKFEELKLKEIKNGRLAML 225
>gi|123316054|gb|ABM74386.1| major light-harvesting chlorophyll a/b protein 3 [Dunaliella
salina]
gi|123316062|gb|ABM74387.1| major light-harvesting chlorophyll a/b protein 3 [Dunaliella
salina]
Length = 261
Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 60/180 (33%), Positives = 86/180 (47%), Gaps = 33/180 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D G DP + Y E++HAR+A+ G GI+ ++L G+
Sbjct: 57 EPPSYLTGEFPGDYGWDTAGFSADPTTFARYRTIEVIHARWALLGALGIVTPEILAQNGV 116
Query: 124 R---ELPVWYEAGAVEFKFASTRTL--------------FIVQLLLMGFAETKRYMDYIS 166
+ +W++AG+ FK L VQ+++MG AE R
Sbjct: 117 PFSGDAAIWFKAGSEIFKEGGLNYLGNPNLIHAQSILATLAVQVIVMGAAEGFRAN---- 172
Query: 167 PGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICLVLC 226
G +EGL+ YPGGP +PLGLA D E K+KEIKNG + + C
Sbjct: 173 -----------GEAPGVEGLDTLYPGGP-FDPLGLADDPDTFAELKVKEIKNGRLAMFAC 220
>gi|87313189|gb|ABD37891.1| light-harvesting chlorophyll-a/b binding protein Lhcb5 [Mesostigma
viride]
Length = 280
Score = 90.1 bits (222), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 65/189 (34%), Positives = 93/189 (49%), Gaps = 35/189 (18%)
Query: 55 QRPTWLPG-----VDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGV 109
RP +LP D P Y++G LAGD+G+DPLGLG + + Y E++H R+AM GV
Sbjct: 62 DRPKYLPTGLLDPADIPAYMNGELAGDYGYDPLGLG-NKGGVEKYRPYEVLHGRWAMLGV 120
Query: 110 AGILFTDLLRVTGIRELP--VWYEAGAVEFKFASTRTL------------FIVQLLLMGF 155
G+L + L G + VW+++GAV ++T T I ++ +
Sbjct: 121 VGMLVPEGLYANGNTNIKGAVWWDSGAVLLDPSATLTWAGIPNPVPLALAVIFEVAVFFL 180
Query: 156 AETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKE 215
E RY G+ GL+P YPGG +PLGLA D A E K+KE
Sbjct: 181 IENYRYQQDGPWGT---------------GLDPLYPGGKYFDPLGLASDPSKADELKVKE 225
Query: 216 IKNGLICLV 224
IKNG + ++
Sbjct: 226 IKNGRLAMM 234
>gi|303281804|ref|XP_003060194.1| chlorophyll a/b-binding protein [Micromonas pusilla CCMP1545]
gi|226458849|gb|EEH56146.1| chlorophyll a/b-binding protein [Micromonas pusilla CCMP1545]
Length = 391
Score = 90.1 bits (222), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 69/200 (34%), Positives = 99/200 (49%), Gaps = 34/200 (17%)
Query: 48 ATVVRAQQRPTWLPGVD-PPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAM 106
A+ + + RP LPG+ PPP+L GTLAGD GFDPL LG+ PESL V+ EL+HAR+AM
Sbjct: 170 ASPLYGEARP-LLPGISSPPPHLTGTLAGDRGFDPLRLGKTPESLARGVELELLHARWAM 228
Query: 107 AGVAGILFTDLLRVTG------IRELPVWYEAGAVE-------------FKFASTRTLFI 147
V G+ + L + G PVW++ GA + F A + + +
Sbjct: 229 LAVVGVAVPEALSIAGALPEGAALAEPVWWKVGAAKLNGESLNYGGLGGFVIAGKQGVAV 288
Query: 148 V---QLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKD 204
+ Q +LMG E Y Y+ S G + +A YPGG +P GL+ D
Sbjct: 289 IAACQAVLMGGPE---YARYVGIRSLEPVGVYLPGDA-------NYPGGAPFDPFGLSDD 338
Query: 205 IRNAREWKLKEIKNGLICLV 224
K+ EI++G + +V
Sbjct: 339 ADRFARQKVIEIEHGRLAMV 358
>gi|168052965|ref|XP_001778909.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669663|gb|EDQ56245.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 198
Score = 90.1 bits (222), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 62/173 (35%), Positives = 84/173 (48%), Gaps = 28/173 (16%)
Query: 59 WLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLL 118
WLPG P YLDG+ GDFGFDPLGLGE PE+L + ++EL+HAR+AM V G+L + L
Sbjct: 4 WLPGNPRPSYLDGSAPGDFGFDPLGLGEVPENLERFKESELIHARWAMLAVPGVLIPEAL 63
Query: 119 RVTGIRELPVWYEAGAVEFKF-------ASTRTLFIVQLLLMGFAETKRYMDYISPGSQT 171
W + + + + V+ + + FAE++R G
Sbjct: 64 GYGNWVSAQKWAATPGGQATYLGNPVPWGTLPVILAVEFIAIAFAESQRN------GESD 117
Query: 172 KEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
E YPGG +P+G +K N E KLKEIKNG + LV
Sbjct: 118 PEKR-------------KYPGG-AFDPMGFSKGA-NLEELKLKEIKNGRLALV 155
>gi|87313225|gb|ABD37909.1| light-harvesting chlorophyll-a/b binding protein LhcbM1
[Chlamydomonas incerta]
Length = 249
Score = 89.7 bits (221), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 68/186 (36%), Positives = 91/186 (48%), Gaps = 34/186 (18%)
Query: 55 QRPTWLPGV--DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGI 112
+RP +L +PP YL G GD+G+D GL DPE+ + Y + EL+HAR+AM G G
Sbjct: 38 ERPLFLGAFTGEPPSYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGC 97
Query: 113 LFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQLLLMGFAE 157
+F +LL G+ VW++AGA F+ S + Q+LLMG E
Sbjct: 98 IFPELLGSYGVPFGEAVWFKAGAQIFQEGGLDYLGNSNLVHAQSILAILGTQVLLMGAIE 157
Query: 158 TKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIK 217
R G G EGL+ YPGG +PLGLA D E K+KEIK
Sbjct: 158 GYRV-----------NGGPLG-----EGLDKLYPGGS-FDPLGLADDPDTFSELKVKEIK 200
Query: 218 NGLICL 223
NG + +
Sbjct: 201 NGRLAM 206
>gi|87313233|gb|ABD37912.1| light-harvesting chlorophyll-a/b binding protein LhcbM5
[Chlamydomonas incerta]
Length = 232
Score = 89.7 bits (221), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 64/165 (38%), Positives = 85/165 (51%), Gaps = 15/165 (9%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTG--I 123
P YL G GD+G+D GL DPE+ + Y + EL+HAR+AM G G + +LL G I
Sbjct: 63 PAYLTGEFPGDYGWDSAGLSADPETFKRYRELELIHARWAMLGALGCVTPELLAKNGTPI 122
Query: 124 RELPVWYEAGAVEFK-----FASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFG 178
E PVW++AGA F+ + L Q +L A M I EG
Sbjct: 123 AE-PVWFKAGAQIFQEGGLDYLGNAGLIHAQSILATLAVQVILMGAI-------EGYRVN 174
Query: 179 LEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
A EGL+ +PGG +PLGLA+D E K+KEIKNG + +
Sbjct: 175 GGPAGEGLDKLHPGGQFFDPLGLAEDPDAFAELKVKEIKNGRLAM 219
>gi|225580691|gb|ACN94453.1| photosystem I light-harvesting cholrophyll-a/b protein 2
[Dunaliella salina]
Length = 228
Score = 89.7 bits (221), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 65/197 (32%), Positives = 98/197 (49%), Gaps = 30/197 (15%)
Query: 38 AKSGTTRRYLATVVR--AQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYV 95
AK R + +R AQ+ + PG +P YL+ L G+F FDPL LG++ +L+ Y
Sbjct: 14 AKQAVNRSVVRPSIRVQAQRAGNFAPGSEPKEYLN-DLPGNFNFDPLELGKEKGTLQRYR 72
Query: 96 QAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAG------AVEFKFASTRTLFIVQ 149
+AEL+H R+AM G AG L ++L + + P+W G +E F T+ V+
Sbjct: 73 EAELIHCRWAMLGAAGCLAVEVLGLGNWYDAPLWAVTGDKPTWFGIEVPF-DIATILGVE 131
Query: 150 LLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAR 209
++ M AE R +Q E YPGG +PLG +KD ++
Sbjct: 132 VVAMAVAEGLRN------DNQDMEKRL-------------YPGG-AFDPLGFSKDPKSFE 171
Query: 210 EWKLKEIKNGLICLVLC 226
+ KLKE+KNG + +V C
Sbjct: 172 DKKLKELKNGRLAMVAC 188
>gi|20269804|gb|AAM18057.1|AF495473_1 major light-harvesting complex II protein m1 [Chlamydomonas
reinhardtii]
gi|15430558|dbj|BAB64414.1| light-harvesting chlorophyll-a/b binding protein LhcII-4
[Chlamydomonas reinhardtii]
gi|15430566|dbj|BAB64418.1| light-harvesting chlorophyll-a/b binding protein LhcII-4
[Chlamydomonas reinhardtii]
gi|27542565|gb|AAO16493.1| light-harvesting complex II protein [Chlamydomonas reinhardtii]
Length = 256
Score = 89.7 bits (221), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 68/186 (36%), Positives = 91/186 (48%), Gaps = 34/186 (18%)
Query: 55 QRPTWLPGV--DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGI 112
+RP +L +PP YL G GD+G+D GL DPE+ + Y + EL+HAR+AM G G
Sbjct: 45 ERPLFLGAFTGEPPSYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGC 104
Query: 113 LFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQLLLMGFAE 157
+F +LL G+ VW++AGA F+ S + Q+LLMG E
Sbjct: 105 IFPELLGSYGVPFGEAVWFKAGAQIFQEGGLDYLGNPNLVHAQSILAILGTQVLLMGAIE 164
Query: 158 TKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIK 217
R G G EGL+ YPGG +PLGLA D E K+KEIK
Sbjct: 165 GYRV-----------NGGPLG-----EGLDKLYPGGS-FDPLGLADDPDTFAELKVKEIK 207
Query: 218 NGLICL 223
NG + +
Sbjct: 208 NGRLAM 213
>gi|159478875|ref|XP_001697526.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
gi|19749357|gb|AAD03732.2| light harvesting complex II protein precursor [Chlamydomonas
reinhardtii]
gi|158274405|gb|EDP00188.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
Length = 268
Score = 89.7 bits (221), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 63/173 (36%), Positives = 86/173 (49%), Gaps = 31/173 (17%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRE 125
P YL G GD+G+D GL DPE+ + Y + EL+HAR+AM G G + +LL G
Sbjct: 69 PAYLTGEFPGDYGWDSAGLSADPETFKRYRELELIHARWAMLGALGCITPELLAKNGTPI 128
Query: 126 L-PVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPGSQ 170
+ PVW++AGA F S VQ++LMG E R ++ G
Sbjct: 129 VEPVWFKAGAQIFAEGGLDYLGNPGLVHAQSILATLAVQVILMGAIEGYR----VNGGP- 183
Query: 171 TKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
A EGL+ +PGG +PLGLA+D E K+KEIKNG + +
Sbjct: 184 -----------AGEGLDKLHPGGQFFDPLGLAEDPDAFAELKVKEIKNGRLAM 225
>gi|87313209|gb|ABD37901.1| light-harvesting chlorophyll-a/b binding protein LhcbM4
[Acutodesmus obliquus]
Length = 255
Score = 89.7 bits (221), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 66/177 (37%), Positives = 87/177 (49%), Gaps = 16/177 (9%)
Query: 55 QRPTWLP--GVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGI 112
R WL P YL G AGD+G+D GL DPE+ R Y + EL+HAR+AM G G
Sbjct: 43 NRAKWLGPFSTATPGYLTGEFAGDYGWDTAGLSADPETFRRYRELELIHARWAMLGALGC 102
Query: 113 LFTDLLRVTGIR-ELPVWYEAGAVEFK-----FASTRTLFIVQLLLMGFAETKRYMDYIS 166
+ +LL G+ VW++AGA F+ + +L Q +L A M +
Sbjct: 103 ITPELLAKNGVPFGEAVWFKAGAQIFQEGGLNYLGNSSLIHAQSILATLACQVILMGLV- 161
Query: 167 PGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
EG A EGL+P YP G +PLGLA D E K+KEIKNG + +
Sbjct: 162 ------EGYRVNGGPAGEGLDPLYP-GEAFDPLGLADDPDTFAELKVKEIKNGRLAM 211
>gi|357124424|ref|XP_003563900.1| PREDICTED: chlorophyll a-b binding protein 1B-21,
chloroplastic-like [Brachypodium distachyon]
Length = 247
Score = 89.4 bits (220), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 65/210 (30%), Positives = 100/210 (47%), Gaps = 32/210 (15%)
Query: 27 SSIGITSAFLPA-KSGTTR----RYLATVVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDP 81
S++G+ S P+ +SG + + T R W PG P +LDG+ GDFGFDP
Sbjct: 13 SAVGVPSLLAPSSRSGRSGLPFCAFATTSGRVTMSAEWFPGQPRPAHLDGSSPGDFGFDP 72
Query: 82 LGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWY---EAGAVEF- 137
LGL PE+ + ++E+ H R+AM V G+L + L + + W + A F
Sbjct: 73 LGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEALGLGNWVKAQEWAALPDGQATYFG 132
Query: 138 ---KFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGP 194
+ + T+ ++ L + FAE +R M+ + K+ YPGG
Sbjct: 133 VPVPWGNLPTILAIEFLAIAFAEQQRTMEK---DPEKKK----------------YPGG- 172
Query: 195 LLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
+PLG +KD E KLKEIKNG + ++
Sbjct: 173 AFDPLGFSKDPAKFEELKLKEIKNGRLAML 202
>gi|149242540|pdb|2O01|1 Chain 1, The Structure Of A Plant Photosystem I Supercomplex At 3.4
Angstrom Resolution
Length = 187
Score = 89.4 bits (220), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 59/172 (34%), Positives = 84/172 (48%), Gaps = 27/172 (15%)
Query: 60 LPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLR 119
+PG P YLDG+ GDFGFDPLGLGE P +L Y ++EL+H R+AM V GIL + L
Sbjct: 1 MPGEPRPAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALG 60
Query: 120 VTGIRELPVW--YEAGAVEF-----KFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTK 172
+ W G + + + T+ ++ L + F E +R M+ +
Sbjct: 61 YGNWVKAQEWAALPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRSMEKDPEKKK-- 118
Query: 173 EGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
YPGG +PLG +KD + E K+KEIKNG + L+
Sbjct: 119 -----------------YPGG-AFDPLGYSKDPKKLEELKVKEIKNGRLALL 152
>gi|9587203|gb|AAF89205.1|AF279248_1 LHCII type II chlorophyll a/b-binding protein [Vigna radiata]
Length = 265
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 67/209 (32%), Positives = 96/209 (45%), Gaps = 42/209 (20%)
Query: 40 SGTTRRYLATVVRAQQRPTWLPGVDP----------PPYLDGTLAGDFGFDPLGLGEDPE 89
SG R + V++ + W P P YL G GD+G+D GL DPE
Sbjct: 30 SGKGRTNMRRTVKSAPQSIWYGPDRPKYLGPFSDQIPSYLTGEFPGDYGWDTAGLSADPE 89
Query: 90 SLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEF----------- 137
+ + E++H+R+AM G GI+F ++L G++ VW++AGA F
Sbjct: 90 TFARNRELEVIHSRWAMLGALGIVFPEILEKNGVKFGEAVWFKAGAQIFSEGGLDYLGNP 149
Query: 138 ---KFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGP 194
S ++ VQ++LMGF E R G EGL+P YPGG
Sbjct: 150 NLIHAQSILAIWAVQVVLMGFVEGYR----------------VGGGPLGEGLDPIYPGG- 192
Query: 195 LLNPLGLAKDIRNAREWKLKEIKNGLICL 223
+PLGLA D E K+KE+KNG + +
Sbjct: 193 AFDPLGLADDPDAFAELKVKELKNGRLAM 221
>gi|159484394|ref|XP_001700243.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
gi|158272559|gb|EDO98358.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
Length = 266
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 68/186 (36%), Positives = 91/186 (48%), Gaps = 34/186 (18%)
Query: 55 QRPTWLPGV--DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGI 112
+RP +L +PP YL G GD+G+D GL DPE+ + Y + EL+HAR+AM G G
Sbjct: 45 ERPLFLGAFTGEPPSYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGC 104
Query: 113 LFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQLLLMGFAE 157
+F +LL G+ VW++AGA F+ S + Q+LLMG E
Sbjct: 105 IFPELLGSYGVPFGEAVWFKAGAQIFQEGGLDYLGNPNLVHAQSILAILGTQVLLMGAIE 164
Query: 158 TKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIK 217
R G G EGL+ YPGG +PLGLA D E K+KEIK
Sbjct: 165 GYRV-----------NGGPLG-----EGLDKLYPGGS-FDPLGLADDPDTFAELKVKEIK 207
Query: 218 NGLICL 223
NG + +
Sbjct: 208 NGRLAM 213
>gi|75265661|sp|Q9SDM1.1|CB121_HORVU RecName: Full=Chlorophyll a-b binding protein 1B-21, chloroplastic;
AltName: Full=LHCI type I CAB-1B-21; AltName:
Full=LHCI-730 chlorophyll a/b binding protein; AltName:
Full=Light-harvesting complex I 21 kDa protein; Flags:
Precursor
gi|6685157|gb|AAF23819.1|AF218305_2 chlorophyll a/b binding protein precursor [Hordeum vulgare]
Length = 245
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 65/210 (30%), Positives = 99/210 (47%), Gaps = 32/210 (15%)
Query: 27 SSIGITSAFLPA-KSGTTR----RYLATVVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDP 81
S++G+ S P+ +SG + Y T R W PG P +LDG+ GDFGFDP
Sbjct: 11 SAVGVPSLLAPSSRSGRSGLPFCAYATTSGRVTMSAEWFPGQPRPAHLDGSSPGDFGFDP 70
Query: 82 LGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVW--YEAGAVEF-- 137
LGL PE+ + ++E+ H R+AM V G+L + L + + W G +
Sbjct: 71 LGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEALGLGNWVKAQEWAALPDGQATYLG 130
Query: 138 ---KFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGP 194
+ + T+ ++ L + FAE +R M+ + K+ YPGG
Sbjct: 131 NPVPWGNLPTILAIEFLAIAFAEQQRTMEK---DPEKKK----------------YPGG- 170
Query: 195 LLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
+PLG +KD E KLKEIKNG + ++
Sbjct: 171 AFDPLGFSKDPAKFEELKLKEIKNGRLAML 200
>gi|357157898|ref|XP_003577951.1| PREDICTED: chlorophyll a-b binding protein 1B, chloroplastic-like
[Brachypodium distachyon]
Length = 318
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 62/184 (33%), Positives = 90/184 (48%), Gaps = 16/184 (8%)
Query: 54 QQRPTWLPGV--DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAG 111
+ RP WL + D P +L G GD+GFD GLG DP + Y E++H R+AM G
Sbjct: 101 EARPRWLGPIPYDYPEHLAGEFPGDYGFDIAGLGRDPVAFANYFNFEILHCRWAMLAALG 160
Query: 112 ILFTDLLRVTGIREL--PVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGS 169
++ +LL + GI PVW++ G + + + L I L + G + + +
Sbjct: 161 VVIPELLDLFGIVHFVEPVWWKVGYAKLQGDTLDYLGITGLRIAG---GQGVIVIAICQA 217
Query: 170 QTKEGSFFGLEAALEGLEP---------GYPGGPLLNPLGLAKDIRNAREWKLKEIKNGL 220
G + +E LEP YPGG L +PLGL+KD E K+KEIKNG
Sbjct: 218 LLMVGPEYARYCGIEALEPLGIYLPGDINYPGGALFDPLGLSKDPVGFEELKVKEIKNGR 277
Query: 221 ICLV 224
+ +V
Sbjct: 278 LAMV 281
>gi|159480944|ref|XP_001698542.1| regulatory chlorophyll a/b binding protein [Chlamydomonas
reinhardtii]
gi|158282282|gb|EDP08035.1| regulatory chlorophyll a/b binding protein [Chlamydomonas
reinhardtii]
Length = 237
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 72/192 (37%), Positives = 96/192 (50%), Gaps = 30/192 (15%)
Query: 60 LPGVDPPPYLDGTLAGDFGFDPLGLGEDPE-------SLRWYVQAELVHARFAMAGVAGI 112
LP V YLDGTL GD GFDPLGL DP S RW AE+VH R+AM G AG
Sbjct: 12 LPSVSSLSYLDGTLPGDMGFDPLGL-FDPTNGSAGFMSQRWLHTAEVVHGRWAMLGAAGC 70
Query: 113 LFTDLL-------RVTGIRELPVWYEAG-----AVEFKFASTRT-LFIVQLLLMGFAETK 159
L + L + TG+ +W++ G + F + T LF++Q+ LMG E+
Sbjct: 71 LAPEYLAHEKVIPKATGL----LWFKTGFLPPVSAGFDYGLPVTALFLIQMGLMGTVESL 126
Query: 160 RYMDYISPGSQTKEGSFFGLEAALEGLEP----GYPGGPLLNPLGL-AKDIRNAREWKLK 214
R+ + +PGS A L G YPGG + NPLGL A RE++
Sbjct: 127 RWAELSNPGSLASNPLVPQPLARLIGTTRLGGGAYPGGLMFNPLGLGATRPAVMREYQQS 186
Query: 215 EIKNGLICLVLC 226
EI++G + +V C
Sbjct: 187 EIRHGRLAMVAC 198
>gi|159474706|ref|XP_001695466.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
gi|19423287|gb|AAL88457.1|AF479778_1 major light-harvesting complex II protein m9 [Chlamydomonas
reinhardtii]
gi|158275949|gb|EDP01724.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
Length = 254
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 63/173 (36%), Positives = 88/173 (50%), Gaps = 32/173 (18%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR- 124
P YL G GD+G+D GL DPE+ + Y + EL+HAR+AM G GI+ +LL+ G++
Sbjct: 55 PAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGIVTPELLQKNGVQF 114
Query: 125 ELPVWYEAGAVEFKFASTRTL--------------FIVQLLLMGFAETKRYMDYISPGSQ 170
VW++AGA F+ L VQ++L+G E R ++ G
Sbjct: 115 GEAVWFKAGAQIFQEGGLNYLGNPSLIHAQNIVATLAVQVVLLGLVEGYR----VNGGP- 169
Query: 171 TKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
A EGL+P YP G +PLGLA D E K+KEIKNG + +
Sbjct: 170 -----------AGEGLDPLYP-GESFDPLGLADDPDTFAELKVKEIKNGRLAM 210
>gi|87313205|gb|ABD37899.1| light-harvesting chlorophyll-a/b binding protein LhcbM2
[Acutodesmus obliquus]
Length = 249
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 66/175 (37%), Positives = 89/175 (50%), Gaps = 29/175 (16%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
D P YL G AGD+G+D GL DP++ Y + E++HAR+AM G G + +LL G+
Sbjct: 45 DTPAYLTGEFAGDYGWDTAGLSADPQTFAKYREIEVIHARWAMLGALGCITPELLAKNGV 104
Query: 124 R-ELPVWYEAGAVEFKFASTRTL--------------FIVQLLLMGFAETKRYMDYISPG 168
VW++AGA F+ L VQ+LLMG AE+ R + +PG
Sbjct: 105 PFGEAVWFKAGAQIFQDGGLNYLGNENLVHAQSILATLAVQVLLMGAAESYR-ANGGAPG 163
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
FG E L+ YPGG +PLGLA D E K+KEIKNG + +
Sbjct: 164 G-------FG-----EDLDSLYPGGA-FDPLGLADDPDTLAELKVKEIKNGRLAM 205
>gi|225690794|gb|ACO06083.1| chlorophyll a-b binding protein [Triticum aestivum]
Length = 252
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 65/210 (30%), Positives = 98/210 (46%), Gaps = 32/210 (15%)
Query: 27 SSIGITSAFLPAK-SGTTR----RYLATVVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDP 81
S++G+ S P+ SG + Y T R W PG P +LDG+ GDFGFDP
Sbjct: 13 SAVGVPSLLAPSSLSGRSGLPFCAYATTSGRVTMSAEWFPGQPRPAHLDGSSPGDFGFDP 72
Query: 82 LGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVW--YEAGAVEF-- 137
LGL PE+ + ++E+ H R+AM V G+L + L + + W G +
Sbjct: 73 LGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEALGLGNWVKAQEWAALPDGQATYLG 132
Query: 138 ---KFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGP 194
+ + T+ ++ L + FAE +R M+ + K+ YPGG
Sbjct: 133 NPVPWGNLPTILAIEFLAIAFAEQQRTMEK---DPEKKK----------------YPGG- 172
Query: 195 LLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
+PLG +KD E KLKEIKNG + ++
Sbjct: 173 AFDPLGFSKDPAKFEELKLKEIKNGRLAML 202
>gi|148909129|gb|ABR17665.1| unknown [Picea sitchensis]
Length = 266
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 67/190 (35%), Positives = 92/190 (48%), Gaps = 16/190 (8%)
Query: 42 TTRRYLATVVRAQQRPTWLP--GVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAEL 99
T R ++ RP +L P YL G GD+G+D GL DPE+ + E+
Sbjct: 41 TVRSAPESIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEV 100
Query: 100 VHARFAMAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK-----FASTRTLFIVQLLLM 153
+H+R+AM G G +F +LL TG++ VW++AGA F + L Q +L
Sbjct: 101 IHSRWAMLGALGCVFPELLAKTGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILA 160
Query: 154 GFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKL 213
+A M I EG G EGL+P YPGG +PLGLA D E K+
Sbjct: 161 IWASQVGLMGLI-------EGYRVGGGPLGEGLDPLYPGG-AFDPLGLADDPEAFAELKV 212
Query: 214 KEIKNGLICL 223
KEIKNG + +
Sbjct: 213 KEIKNGRLAM 222
>gi|116782415|gb|ABK22497.1| unknown [Picea sitchensis]
gi|116786586|gb|ABK24164.1| unknown [Picea sitchensis]
gi|116791880|gb|ABK26145.1| unknown [Picea sitchensis]
gi|148908679|gb|ABR17447.1| unknown [Picea sitchensis]
gi|148909254|gb|ABR17727.1| unknown [Picea sitchensis]
gi|224284476|gb|ACN39972.1| unknown [Picea sitchensis]
gi|224285327|gb|ACN40388.1| unknown [Picea sitchensis]
Length = 266
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 69/204 (33%), Positives = 99/204 (48%), Gaps = 17/204 (8%)
Query: 28 SIGITSAFLPAKSGTTRRYLATVVRAQQRPTWLP--GVDPPPYLDGTLAGDFGFDPLGLG 85
+G++ A + + T R ++ RP +L P YL G GD+G+D GL
Sbjct: 28 KVGMSQARITMRR-TVRSAPESIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLS 86
Query: 86 EDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK-----F 139
DPE+ + E++H R+AM G G +F +LL TG++ VW++AGA F +
Sbjct: 87 ADPETFAKNRELEVIHCRWAMLGALGCVFPELLAKTGVKFGEAVWFKAGAQIFSEGGLDY 146
Query: 140 ASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPL 199
L Q +L +A M I EG G EGL+P YPGG +PL
Sbjct: 147 LGNPNLIHAQSILAIWASQVVLMGLI-------EGYRVGGGPLGEGLDPLYPGG-AFDPL 198
Query: 200 GLAKDIRNAREWKLKEIKNGLICL 223
GLA D + E K+KEIKNG + +
Sbjct: 199 GLADDPESFAELKVKEIKNGRLAM 222
>gi|116779784|gb|ABK21429.1| unknown [Picea sitchensis]
gi|116782287|gb|ABK22448.1| unknown [Picea sitchensis]
gi|116785934|gb|ABK23914.1| unknown [Picea sitchensis]
gi|116786318|gb|ABK24064.1| unknown [Picea sitchensis]
gi|116791776|gb|ABK26103.1| unknown [Picea sitchensis]
gi|116793629|gb|ABK26818.1| unknown [Picea sitchensis]
gi|148909078|gb|ABR17641.1| unknown [Picea sitchensis]
gi|224284321|gb|ACN39896.1| unknown [Picea sitchensis]
gi|224284480|gb|ACN39974.1| unknown [Picea sitchensis]
gi|224284600|gb|ACN40033.1| unknown [Picea sitchensis]
gi|224285740|gb|ACN40585.1| unknown [Picea sitchensis]
gi|224285871|gb|ACN40649.1| unknown [Picea sitchensis]
Length = 266
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 67/190 (35%), Positives = 92/190 (48%), Gaps = 16/190 (8%)
Query: 42 TTRRYLATVVRAQQRPTWLP--GVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAEL 99
T R ++ RP +L P YL G GD+G+D GL DPE+ + E+
Sbjct: 41 TVRSAPESIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEV 100
Query: 100 VHARFAMAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK-----FASTRTLFIVQLLLM 153
+H+R+AM G G +F +LL TG++ VW++AGA F + L Q +L
Sbjct: 101 IHSRWAMLGALGCVFPELLAKTGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILA 160
Query: 154 GFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKL 213
+A M I EG G EGL+P YPGG +PLGLA D E K+
Sbjct: 161 IWASQVVLMGLI-------EGYRVGGGPLGEGLDPLYPGG-AFDPLGLADDPEAFAELKV 212
Query: 214 KEIKNGLICL 223
KEIKNG + +
Sbjct: 213 KEIKNGRLAM 222
>gi|384249593|gb|EIE23074.1| putative chlorophyll a/b-binding protein, chloroplast precursor
[Coccomyxa subellipsoidea C-169]
Length = 210
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 61/173 (35%), Positives = 82/173 (47%), Gaps = 31/173 (17%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR- 124
P YL+G GD+G+D GL DPE+ Y + E++HAR+AM G G L +LL G
Sbjct: 12 PSYLNGEFPGDYGWDTAGLSADPETFARYREIEVIHARWAMLGALGCLTPELLSQNGFTF 71
Query: 125 ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPGSQ 170
+ PVW++AGA S VQ++LMG AE R
Sbjct: 72 QEPVWWKAGAQILSSEGLDYLGKPNLVHAQSIVATLAVQVILMGSAEAYRAA-------- 123
Query: 171 TKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G ++GL+ YPGGP +PL A D E K+KEIKNG + +
Sbjct: 124 -------GSAPGVDGLDKLYPGGP-FDPLEFASDPDTLAELKVKEIKNGRLAM 168
>gi|424513524|emb|CCO66146.1| light-harvesting protein of photosystem I [Bathycoccus prasinos]
Length = 212
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/166 (35%), Positives = 87/166 (52%), Gaps = 29/166 (17%)
Query: 59 WLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLL 118
W PG P YLDG++AGD+GFDPL LG + ESL + +AEL++ R+AM G+L TD
Sbjct: 2 WYPGATAPDYLDGSMAGDYGFDPLRLGANKESLPYLQEAELMNGRWAMYATIGVLATD-- 59
Query: 119 RVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFG 178
LP ++EAGA ++ +TL + Q+++MG E R ++ G
Sbjct: 60 ---SNPSLPKFWEAGAADYDI-DFKTLVVTQVIVMGILEALRIRGFMKTGES-------- 107
Query: 179 LEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
GL +P +P G+ D AR +KE+KNG + +V
Sbjct: 108 ------GLGANFP----FDPAGM--DSPAAR---VKEVKNGRLAMV 138
>gi|145079746|tpg|DAA05928.1| TPA_inf: chloroplast light-harvesting complex protein CP26
precursor Lhcb5 [Mesostigma viride]
Length = 287
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 66/189 (34%), Positives = 96/189 (50%), Gaps = 35/189 (18%)
Query: 55 QRPTWLPG--VDP---PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGV 109
RP +LP +DP P Y++G LAGD+G+DPLGLG + Y E++H R+AM GV
Sbjct: 69 DRPKYLPTGLLDPADIPAYMNGELAGDYGYDPLGLGNK-GGVEKYRPYEVLHGRWAMLGV 127
Query: 110 AGILFTDLLRVTGIRELP--VWYEAGAVEFKFASTRTL------------FIVQLLLMGF 155
G+L + L G + VW+++GAV ++T T I ++ +
Sbjct: 128 VGMLVPEGLYANGNTNIKGAVWWDSGAVLLDPSATLTWAGIPNPVPLALAVIFEVAVFFL 187
Query: 156 AETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKE 215
E RY ++G + GL+P YPGG +PLGLA D A E K+KE
Sbjct: 188 IENYRYQ---------QDGPWG------TGLDPLYPGGKYFDPLGLASDPSKADELKVKE 232
Query: 216 IKNGLICLV 224
IKNG + ++
Sbjct: 233 IKNGRLAMM 241
>gi|375152222|gb|AFA36569.1| putative chlorophyll a/b-binding protein, partial [Lolium perenne]
Length = 206
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 60/172 (34%), Positives = 86/172 (50%), Gaps = 14/172 (8%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
D P +LDG GD+GFD GLG DP + Y E++H R+AM G G++ +LL + GI
Sbjct: 1 DYPEHLDGEFPGDYGFDIAGLGRDPVAFANYFNFEILHCRWAMLGALGVVVPELLDLFGI 60
Query: 124 REL--PVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEA 181
PVW++ G + + + L I L + G + + + G +
Sbjct: 61 VHFVEPVWWKVGYAKLQGDTLDYLGIPGLRIAG---GQGIIVIAICQALLMVGPEYARYC 117
Query: 182 ALEGLEP---------GYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
+E LEP YPGG L +PLGL+KD E K+KEIKNG + +V
Sbjct: 118 GIEALEPLGIYLPGDLNYPGGALFDPLGLSKDPVAFEELKVKEIKNGRLAMV 169
>gi|384252962|gb|EIE26437.1| chlorophyll a/b-binding protein [Coccomyxa subellipsoidea C-169]
Length = 245
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 64/178 (35%), Positives = 84/178 (47%), Gaps = 31/178 (17%)
Query: 61 PGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRV 120
P + P YL G GD+G+D GL DPE+ Y + E++HAR+AM G G + +LL
Sbjct: 42 PFTESPSYLKGEFPGDYGWDTAGLSADPETFARYREIEVIHARWAMLGALGCVTPELLAK 101
Query: 121 TGIR-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYI 165
G+ VW++AGA F S Q++LMG AE R
Sbjct: 102 NGVSFGEAVWFKAGAQIFGSDGLNYLGNPSLVHAQSIIATLACQVILMGGAEAYR----- 156
Query: 166 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
EG +EGL+ YPGGP +PLGLA D E K KEIKNG + +
Sbjct: 157 ----ANGEGP------GVEGLDSLYPGGP-FDPLGLADDPDTFAELKTKEIKNGRLAM 203
>gi|159471686|ref|XP_001693987.1| light-harvesting protein of photosystem II [Chlamydomonas
reinhardtii]
gi|15430556|dbj|BAB64413.1| light-harvesting chlorophyll-a/b binding protein LhcII-3
[Chlamydomonas reinhardtii]
gi|15430564|dbj|BAB64417.1| light-harvesting chlorophyll-a/b binding protein LhcII-3
[Chlamydomonas reinhardtii]
gi|158277154|gb|EDP02923.1| light-harvesting protein of photosystem II [Chlamydomonas
reinhardtii]
Length = 249
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 64/175 (36%), Positives = 84/175 (48%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
D P YL G GD+G+D GL DPE+ + Y + EL+HAR+AM G G + +LL GI
Sbjct: 48 DTPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCITPELLAKNGI 107
Query: 124 R-ELPVWYEAGAVEFKFASTRTL--------------FIVQLLLMGFAETKRYMDYISPG 168
VW++AGA F L Q+++MG AE R
Sbjct: 108 PFGEAVWFKAGAQIFAEGGLNYLGNENLIHAQSIIATLAFQVVVMGLAEAYR-------- 159
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G EGL+P +PGG +PLGLA D E K+KEIKNG + +
Sbjct: 160 ---ANGGPLG-----EGLDPLHPGG-AFDPLGLADDPDTFAELKVKEIKNGRLAM 205
>gi|116780878|gb|ABK21859.1| unknown [Picea sitchensis]
gi|116780908|gb|ABK21874.1| unknown [Picea sitchensis]
gi|116786305|gb|ABK24058.1| unknown [Picea sitchensis]
gi|116788326|gb|ABK24837.1| unknown [Picea sitchensis]
gi|116791751|gb|ABK26095.1| unknown [Picea sitchensis]
gi|224284118|gb|ACN39796.1| unknown [Picea sitchensis]
gi|224284899|gb|ACN40179.1| unknown [Picea sitchensis]
Length = 266
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 67/190 (35%), Positives = 91/190 (47%), Gaps = 16/190 (8%)
Query: 42 TTRRYLATVVRAQQRPTWLP--GVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAEL 99
T R ++ RP +L P YL G GD+G+D GL DPE+ + E+
Sbjct: 41 TVRSAPESIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEV 100
Query: 100 VHARFAMAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK-----FASTRTLFIVQLLLM 153
+H R+AM G G +F +LL TG++ VW++AGA F + L Q +L
Sbjct: 101 IHCRWAMLGALGCVFPELLAKTGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILA 160
Query: 154 GFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKL 213
+A M I EG G EGL+P YPGG +PLGLA D E K+
Sbjct: 161 IWASQVVLMGLI-------EGYRVGGGPLGEGLDPLYPGG-AFDPLGLADDPEAFAELKV 212
Query: 214 KEIKNGLICL 223
KEIKNG + +
Sbjct: 213 KEIKNGRLAM 222
>gi|302808391|ref|XP_002985890.1| light-harvesting complex [Selaginella moellendorffii]
gi|300146397|gb|EFJ13067.1| light-harvesting complex [Selaginella moellendorffii]
Length = 320
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 64/195 (32%), Positives = 99/195 (50%), Gaps = 26/195 (13%)
Query: 48 ATVVRAQQRPTWLPGV--DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFA 105
A+V Q RP WL + D P +L G+ GD+GFD GLG+DP + E++HAR+A
Sbjct: 96 ASVWFGQDRPKWLGPIPYDYPDHLQGSFPGDYGFDIAGLGKDPAKFDKFFNFEILHARWA 155
Query: 106 MAGVAGILFTDLL-RVTGIR-ELPVWYEAGAVEFKFASTRTLFIVQLLLMG-----FAET 158
M G++ ++L + G++ VW+ G + + + L I L ++G
Sbjct: 156 MLAALGVVIPEVLEKFFGVKFAESVWWRVGYAKLEGDTLDYLGIPGLHIVGAQGILVIAI 215
Query: 159 KRYMDYISPGSQTKEGSFFGLEAALEGLEP---------GYPGGPLLNPLGLAKDIRNAR 209
+++ + P + + G+EA LEP YPGG L +PLGL+KD
Sbjct: 216 CQFLLMVGP----EYARYCGIEA----LEPLGIYLPGDINYPGGVLFDPLGLSKDPATFE 267
Query: 210 EWKLKEIKNGLICLV 224
E K+KEIKNG + +V
Sbjct: 268 ELKVKEIKNGRLAMV 282
>gi|374412428|gb|AEZ49172.1| chlorophyll a/b binding protein of LHCII type I [Wolffia
australiana]
Length = 264
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 61/164 (37%), Positives = 84/164 (51%), Gaps = 14/164 (8%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR- 124
P YL G GD+G+D GL DPE+ + E++HAR+AM G G +F +LL G++
Sbjct: 65 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHARWAMLGALGCIFPELLSKNGVKF 124
Query: 125 ELPVWYEAGAVEFK-----FASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGL 179
VW++AG+ F + L Q +L +A M +I EG G
Sbjct: 125 GEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWATQVVLMGFI-------EGYRVGG 177
Query: 180 EAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
EGL+P YPGG +PLGLA D E K+KEIKNG + +
Sbjct: 178 GPLGEGLDPLYPGG-AFDPLGLADDPEAFAELKVKEIKNGRLAM 220
>gi|115478412|ref|NP_001062801.1| Os09g0296800 [Oryza sativa Japonica Group]
gi|50725078|dbj|BAD33211.1| putative chlorophyll a/b-binding protein [Oryza sativa Japonica
Group]
gi|113631034|dbj|BAF24715.1| Os09g0296800 [Oryza sativa Japonica Group]
Length = 321
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 66/215 (30%), Positives = 97/215 (45%), Gaps = 48/215 (22%)
Query: 39 KSGTTRRYLATVVRAQQRPTWLPGV--DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQ 96
+S + A+ +RP WL V + P +L G GD+GFD GLG DP + Y
Sbjct: 89 RSAARQARTASSWYGDERPRWLGPVPYEYPAHLTGEYPGDYGFDIAGLGRDPVAFANYFN 148
Query: 97 AELVHARFAMAGVAGILFTDLLRVTGIREL--PVWYEAGAVE-------------FKFAS 141
E++H R+AM G++ +LL + G+ PVW++ G + F+ A
Sbjct: 149 FEILHCRWAMLAALGVVVPELLDLFGVVHFVEPVWWKVGYAKLQGDTLDYLGIPGFRIAG 208
Query: 142 TRTLFIV---QLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEP---------G 189
+ + ++ Q LLM E RY +E LEP
Sbjct: 209 GQGVIVIAICQALLMVGPEYARY-------------------CGIEALEPLGLYLPGDIN 249
Query: 190 YPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
YPGG L +PLGL+KD + K+KEIKNG + +V
Sbjct: 250 YPGGALFDPLGLSKDPVAFEDLKVKEIKNGRLAMV 284
>gi|116779526|gb|ABK21323.1| unknown [Picea sitchensis]
Length = 266
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 62/164 (37%), Positives = 84/164 (51%), Gaps = 14/164 (8%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR- 124
P YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL TG++
Sbjct: 67 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLAKTGVKF 126
Query: 125 ELPVWYEAGAVEFK-----FASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGL 179
VW++AGA F + L Q +L +A M I EG G
Sbjct: 127 GEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWASQVVLMGLI-------EGYRVGG 179
Query: 180 EAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
EGL+P YPGG +PLGLA D E K+KEIKNG + +
Sbjct: 180 GPLGEGLDPLYPGG-AFDPLGLADDPEAFAELKVKEIKNGRLAM 222
>gi|168049357|ref|XP_001777130.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162671573|gb|EDQ58123.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 348
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 63/198 (31%), Positives = 92/198 (46%), Gaps = 48/198 (24%)
Query: 56 RPTWLPGV--DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGIL 113
RP WL + D P +L G GD+GFD LGL DP + Y E++HAR+AM G++
Sbjct: 131 RPKWLGPIPYDYPDHLQGEAPGDYGFDILGLSRDPTAFERYFNFEILHARWAMLAALGVV 190
Query: 114 FTDLL-RVTGIR-ELPVWYEAGAVEFK-------------FASTRTLFIV---QLLLMGF 155
+LL R G++ PVW++ G + + A + + ++ Q++LM
Sbjct: 191 IPELLDRFGGVQFSEPVWWKVGYAKLQGDTLDYLGIPGLHIAGAQGILVIAFCQVILMLG 250
Query: 156 AETKRYMDYISPGSQTKEGSFFGLEAALEGLEP---------GYPGGPLLNPLGLAKDIR 206
E RY +E LEP YPGG L +PLGL KD
Sbjct: 251 PEYARY-------------------CGIEALEPLGIFLPGDVNYPGGALFDPLGLTKDAA 291
Query: 207 NAREWKLKEIKNGLICLV 224
+ K+KE+KNG + +V
Sbjct: 292 AFEDLKVKEMKNGRLAMV 309
>gi|302833824|ref|XP_002948475.1| hypothetical protein VOLCADRAFT_73821 [Volvox carteri f.
nagariensis]
gi|300266162|gb|EFJ50350.1| hypothetical protein VOLCADRAFT_73821 [Volvox carteri f.
nagariensis]
Length = 257
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 64/175 (36%), Positives = 86/175 (49%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + Y + EL+HAR+AM G G +F +LL G+
Sbjct: 56 EPPSYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCIFPELLGSYGV 115
Query: 124 R-ELPVWYEAGAVEFK--------------FASTRTLFIVQLLLMGFAETKRYMDYISPG 168
VW++AGA F+ S + Q++LMG E R
Sbjct: 116 PFGESVWFKAGAQIFQEGGLDYLGNPSLVHAQSILAILGTQVILMGAIEGYRV------- 168
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G EGL+ YPGG +PLGLA D E K+KEIKNG + +
Sbjct: 169 ----NGGPLG-----EGLDKLYPGGS-FDPLGLADDPDTFAELKVKEIKNGRLAM 213
>gi|307103588|gb|EFN51847.1| hypothetical protein CHLNCDRAFT_59790 [Chlorella variabilis]
Length = 251
Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 73/208 (35%), Positives = 99/208 (47%), Gaps = 37/208 (17%)
Query: 37 PAKSGTTRRYLATV-VRAQQRPTWL-PGVDP--PPYLDGTLAGDFGFDPLGLGEDPESLR 92
PA G+ + A+V R WL P D P YL G GD+G+D GL DPE+
Sbjct: 16 PAVRGSRQVTRASVEFYGPDRAKWLGPFSDGAVPSYLKGEFPGDYGWDSAGLSADPETFA 75
Query: 93 WYVQAELVHARFAMAGVAGILFTDLLRVTGIR---ELPVWYEAGAVEF------------ 137
Y + E++HAR+AM G G L +LL+ G E VW++AGA F
Sbjct: 76 RYREIEVIHARWAMLGALGCLTPELLQNNGAADFGEAAVWFKAGASIFSDDGLNYLGNPS 135
Query: 138 --KFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPL 195
S + + QL++MG AE RY EG +E + + L YPGG
Sbjct: 136 LIHAQSIVAVLLTQLVIMGAAEAYRY---------AGEGP---VETSGDSL---YPGG-A 179
Query: 196 LNPLGLAKDIRNAREWKLKEIKNGLICL 223
+PLGLA D E K+KE+KNG + +
Sbjct: 180 FDPLGLADDPDTLAELKVKELKNGRLAM 207
>gi|346987813|gb|AEO51757.1| chloroplast chlorophyll A/B binding protein [Dimocarpus longan]
Length = 265
Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 64/190 (33%), Positives = 92/190 (48%), Gaps = 16/190 (8%)
Query: 42 TTRRYLATVVRAQQRPTWLP--GVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAEL 99
T + A++ RP +L P YL G GD+G+D GL DPE+ + E+
Sbjct: 40 TVKSVPASIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEV 99
Query: 100 VHARFAMAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK-----FASTRTLFIVQLLLM 153
+H R+AM G G +F ++L G++ VW++AGA F + L Q +L
Sbjct: 100 IHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILA 159
Query: 154 GFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKL 213
+A M ++ EG G EGL+P YPGG +PLGLA D E K+
Sbjct: 160 IWATQVVLMGFV-------EGYRIGGGPLGEGLDPLYPGG-AFDPLGLADDPDAFAELKV 211
Query: 214 KEIKNGLICL 223
KEIKNG + +
Sbjct: 212 KEIKNGRLAM 221
>gi|297839529|ref|XP_002887646.1| chlorophyll A-B binding family protein [Arabidopsis lyrata subsp.
lyrata]
gi|297333487|gb|EFH63905.1| chlorophyll A-B binding family protein [Arabidopsis lyrata subsp.
lyrata]
Length = 330
Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 64/200 (32%), Positives = 93/200 (46%), Gaps = 48/200 (24%)
Query: 54 QQRPTWLPGV--DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAG 111
++RP W + D PPYL G L GD+GFD GLG+D + Y E++HAR+AM G
Sbjct: 112 KERPRWFGPIPYDYPPYLTGELPGDYGFDIAGLGKDRLTFDKYFNFEILHARWAMLAALG 171
Query: 112 ILFTDLLRVTGIREL--PVWYEAGAVEFK-------------FASTRTLFIV---QLLLM 153
L ++L +TG PVW+ G + + A ++ + ++ Q+LLM
Sbjct: 172 ALIPEVLDLTGAFHFAEPVWWRVGYSKLQGETLDYLGIPGLHVAGSQGVIVIAICQVLLM 231
Query: 154 GFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEP---------GYPGGPLLNPLGLAKD 204
E RY +E LEP YPGG L +PL L++D
Sbjct: 232 VGPEYARY-------------------CGIEALEPLGIYLPGDINYPGGTLFDPLNLSED 272
Query: 205 IRNAREWKLKEIKNGLICLV 224
+ K+KEIKNG + +V
Sbjct: 273 PVAFEDLKVKEIKNGRLAMV 292
>gi|159471942|ref|XP_001694115.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
gi|12658406|gb|AAK01125.1|AF330793_1 light-harvesting complex II protein precursor [Chlamydomonas
reinhardtii]
gi|158277282|gb|EDP03051.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
Length = 249
Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 64/175 (36%), Positives = 84/175 (48%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
D P YL G GD+G+D GL DPE+ + Y + EL+HAR+AM G G + +LL GI
Sbjct: 48 DTPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCITPELLAKNGI 107
Query: 124 R-ELPVWYEAGAVEFKFASTRTL--------------FIVQLLLMGFAETKRYMDYISPG 168
VW++AGA F L Q+++MG AE R
Sbjct: 108 PFGEAVWFKAGAQIFAEGGLNYLGNENLIHAQSIIATLAFQVVVMGLAEAYR-------- 159
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G EGL+P +PGG +PLGLA D E K+KEIKNG + +
Sbjct: 160 ---ANGGPLG-----EGLDPLHPGG-AFDPLGLADDPDTFAELKVKEIKNGRLAM 205
>gi|145079419|tpg|DAA05914.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm2 [Acetabularia acetabulum]
Length = 248
Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 75/220 (34%), Positives = 100/220 (45%), Gaps = 37/220 (16%)
Query: 24 VNKSSIGITS-AFLPAKSGTTRRYLATVVRAQQRPTWL-PGVDP--PPYLDGTLAGDFGF 79
V S +G T+ + LP + A R WL P D P YL G GD+G+
Sbjct: 2 VQTSLVGTTTKSTLPKGNKRVSVQAAVEWYGPDRAKWLGPYSDGAVPSYLTGEFPGDYGW 61
Query: 80 DPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIREL--PVWYEAGAVEF 137
D GL DPE+ + Y + EL+HAR+AM G G + ++L G VW+ AGA F
Sbjct: 62 DTAGLSADPETFKKYRETELIHARWAMLGALGCVTPEILAKYGGTSFGESVWFRAGAQIF 121
Query: 138 K--------------FASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAAL 183
K S + I Q++LMG E R ++ G A
Sbjct: 122 KDGGLDYLGSPALIHAQSIGAIVISQVILMGLIEGYR----VNGGP------------AG 165
Query: 184 EGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
EGL+P YP G +PLGLA D E K+KEIKNG + +
Sbjct: 166 EGLDPLYP-GESFDPLGLADDPDTFAELKIKEIKNGRLAM 204
>gi|302789319|ref|XP_002976428.1| light-harvesting complex [Selaginella moellendorffii]
gi|300156058|gb|EFJ22688.1| light-harvesting complex [Selaginella moellendorffii]
Length = 320
Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 64/195 (32%), Positives = 98/195 (50%), Gaps = 26/195 (13%)
Query: 48 ATVVRAQQRPTWLPGV--DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFA 105
A+V Q RP WL + D P +L G+ GD+GFD GLG+DP + E++HAR+A
Sbjct: 96 ASVWFGQDRPKWLGPIPYDYPDHLQGSFPGDYGFDIAGLGKDPAKFDKFFNFEILHARWA 155
Query: 106 MAGVAGILFTDLL-RVTGIR-ELPVWYEAGAVEFKFASTRTLFIVQLLLMG-----FAET 158
M G++ ++L + G+ VW+ G + + + L I L ++G
Sbjct: 156 MLAALGVVIPEVLEKFFGVNFAESVWWRVGYAKLEGDTLDYLGIPGLHIVGAQGIIVIAI 215
Query: 159 KRYMDYISPGSQTKEGSFFGLEAALEGLEP---------GYPGGPLLNPLGLAKDIRNAR 209
+++ + P + + G+EA LEP YPGG L +PLGL+KD
Sbjct: 216 CQFLLMVGP----EYARYCGIEA----LEPLGIYLPGDINYPGGVLFDPLGLSKDPATFE 267
Query: 210 EWKLKEIKNGLICLV 224
E K+KEIKNG + +V
Sbjct: 268 ELKVKEIKNGRLAMV 282
>gi|15223108|ref|NP_177783.1| putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|12323973|gb|AAG51944.1|AC015450_5 putative chlorophyll A-B binding protein; 65434-67056 [Arabidopsis
thaliana]
gi|332197739|gb|AEE35860.1| putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
Length = 327
Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 64/200 (32%), Positives = 89/200 (44%), Gaps = 48/200 (24%)
Query: 54 QQRPTWLPGV--DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAG 111
++RP W + D PPYL G L GD+GFD GLG+D + Y E++HAR+AM G
Sbjct: 109 KERPRWFGPIPYDYPPYLTGELPGDYGFDIAGLGKDRLTFDKYFNFEILHARWAMLAALG 168
Query: 112 ILFTDLLRVTGIREL--PVWYEAGAVEFKFASTRTL----------------FIVQLLLM 153
L ++ +TG PVW+ G + + + L I Q+LLM
Sbjct: 169 ALIPEVFDLTGTFHFAEPVWWRVGYSKLQGETLEYLGIPGLHVAGSQGVIVIAICQVLLM 228
Query: 154 GFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEP---------GYPGGPLLNPLGLAKD 204
E RY +E LEP YPGG L +PL L++D
Sbjct: 229 VGPEYARY-------------------CGIEALEPLGIYLPGDINYPGGTLFDPLNLSED 269
Query: 205 IRNAREWKLKEIKNGLICLV 224
+ K+KEIKNG + +V
Sbjct: 270 PVAFEDLKVKEIKNGRLAMV 289
>gi|4139216|gb|AAD03731.1| light harvesting complex II protein precursor [Chlamydomonas
reinhardtii]
Length = 254
Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 64/173 (36%), Positives = 85/173 (49%), Gaps = 32/173 (18%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR- 124
P YL G GD+G+D GL DPE+ + Y + EL+HAR+AM G G L +LL +G +
Sbjct: 55 PAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCLTPELLAKSGTKF 114
Query: 125 ELPVWYEAGAVEFKFASTRTL--------------FIVQLLLMGFAETKRYMDYISPGSQ 170
VW++AGA F L VQ++LMG E R ++ G
Sbjct: 115 GEAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATLAVQVILMGLIEGYR----VNGGP- 169
Query: 171 TKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
A EGL+P YP G +PLGLA D E K+KEIKNG + +
Sbjct: 170 -----------AGEGLDPLYP-GESFDPLGLADDPDTFAELKVKEIKNGALAM 210
>gi|226530077|ref|NP_001149586.1| chlorophyll a-b binding protein 6A [Zea mays]
gi|194706946|gb|ACF87557.1| unknown [Zea mays]
gi|195628244|gb|ACG35952.1| chlorophyll a-b binding protein 6A [Zea mays]
gi|413926425|gb|AFW66357.1| chlorophyll a-b binding protein 6A [Zea mays]
Length = 249
Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 57/186 (30%), Positives = 89/186 (47%), Gaps = 27/186 (14%)
Query: 46 YLATVVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFA 105
+ T R W+PG P +LDG+ GDFGFDPLGL PE+ + ++E+ H R+A
Sbjct: 40 HATTSGRVTMSAEWMPGQPRPAHLDGSSPGDFGFDPLGLATVPENFERFKESEVYHCRWA 99
Query: 106 MAGVAGILFTDLLRVTGIRELPVW--YEAGAVEF-----KFASTRTLFIVQLLLMGFAET 158
M V G+L + L + + W G + + + T+ V+ + + FAE
Sbjct: 100 MLAVPGVLVPEALGLGNWVKAQEWAAVPGGQATYLGAPVPWGTLPTILAVEFVAIAFAEH 159
Query: 159 KRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKN 218
+R M+ + K+ YPGG +PLG ++D E+KLKEIKN
Sbjct: 160 QRTMEK---DPEKKK----------------YPGG-AFDPLGFSRDPAKLEEYKLKEIKN 199
Query: 219 GLICLV 224
G + ++
Sbjct: 200 GRLAML 205
>gi|87313227|gb|ABD37910.1| light-harvesting chlorophyll-a/b binding protein LhcbM2a
[Chlamydomonas incerta]
Length = 246
Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 72/214 (33%), Positives = 98/214 (45%), Gaps = 38/214 (17%)
Query: 31 ITSAFLPAKSGTTRRYL---ATVVRAQQRPTWLPGV---DPPPYLDGTLAGDFGFDPLGL 84
+ S+ P SG + R + A RP +L D P YL G GD+G+D GL
Sbjct: 6 VRSSVRPTVSGRSARVVPRAAIEWYGPDRPKFLGPFSEGDTPAYLTGEFPGDYGWDTAGL 65
Query: 85 GEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFKFASTR 143
DPE+ + Y + EL+HAR+AM G G + +LL GI VW++AG+ F
Sbjct: 66 SADPETFKRYRELELIHARWAMLGALGCITPELLAKNGIPFGEAVWFKAGSQIFAEGGLN 125
Query: 144 TL--------------FIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPG 189
L Q+++MG AE R G G EGL+P
Sbjct: 126 YLGNENLVHAQSIIATLAFQVVVMGLAEAYR-----------ANGGPLG-----EGLDPL 169
Query: 190 YPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
+PGG +PLGLA D E K+KEIKNG + +
Sbjct: 170 HPGG-AFDPLGLADDPDTFAELKVKEIKNGRLAM 202
>gi|260914751|gb|ACX54226.1| chlorophyll A/B binding protein [Jatropha curcas]
Length = 261
Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 61/173 (35%), Positives = 84/173 (48%), Gaps = 32/173 (18%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR- 124
P YL G GD+G+D GL DPE+ + E++H R+AM G G +F ++L G++
Sbjct: 66 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEILSKNGVKF 125
Query: 125 ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPGSQ 170
VW++AGA F S ++ VQ++LMGF E R
Sbjct: 126 GEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWAVQVVLMGFVEGYR---------- 175
Query: 171 TKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G EGL+P YPGG +PLGLA D E K+KEIKNG + +
Sbjct: 176 ------VGGGPLGEGLDPIYPGGA-FDPLGLADDPDAFAELKVKEIKNGRLAM 221
>gi|126566046|gb|ABO20852.1| chlorophyll a/b binding protein of LHCII type I [Lilium
longiflorum]
Length = 264
Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 61/173 (35%), Positives = 85/173 (49%), Gaps = 32/173 (18%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR- 124
P YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G++
Sbjct: 65 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSKNGVKF 124
Query: 125 ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPGSQ 170
VW++AGA F S ++ VQ++LMGF E R
Sbjct: 125 GEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFIEGYR---------- 174
Query: 171 TKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G EGL+P YPGG +PLGLA D E K+KE+KNG + +
Sbjct: 175 ------IGGGPLGEGLDPLYPGGA-FDPLGLADDPDAFAELKVKELKNGRLAM 220
>gi|302832904|ref|XP_002948016.1| hypothetical protein VOLCADRAFT_79865 [Volvox carteri f.
nagariensis]
gi|300266818|gb|EFJ51004.1| hypothetical protein VOLCADRAFT_79865 [Volvox carteri f.
nagariensis]
Length = 254
Score = 87.0 bits (214), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 63/173 (36%), Positives = 85/173 (49%), Gaps = 32/173 (18%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR- 124
P YL G GD+G+D GL DPE+ + Y + EL+HAR+AM G G L +LL G++
Sbjct: 55 PAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCLTPELLSKNGVQF 114
Query: 125 ELPVWYEAGAVEFKFASTRTL--------------FIVQLLLMGFAETKRYMDYISPGSQ 170
VW++AGA F+ L Q++LMG E R ++ G
Sbjct: 115 GEAVWFKAGAQIFQEGGLDYLGNPSLVHAQNIVATLACQVILMGLVEGYR----VNGGP- 169
Query: 171 TKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
A EGL+P YP G +PLGLA D E K+KEIKNG + +
Sbjct: 170 -----------AGEGLDPLYP-GESFDPLGLADDPDTFAELKVKEIKNGRLAM 210
>gi|242044232|ref|XP_002459987.1| hypothetical protein SORBIDRAFT_02g020290 [Sorghum bicolor]
gi|241923364|gb|EER96508.1| hypothetical protein SORBIDRAFT_02g020290 [Sorghum bicolor]
Length = 314
Score = 87.0 bits (214), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 65/199 (32%), Positives = 91/199 (45%), Gaps = 48/199 (24%)
Query: 55 QRPTWLPGV--DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGI 112
RP WL V D P +L G GD+GFD GLG DP + Y E++H R+AM G+
Sbjct: 98 DRPRWLGPVPYDYPEHLTGEYPGDYGFDIAGLGRDPIAFANYFNFEILHCRWAMLAALGV 157
Query: 113 LFTDLLRVTGIREL--PVWYEAGAVE-------------FKFASTRTLFIV---QLLLMG 154
+ +LL + G+ PVW++ G + F+ A + + ++ Q LLM
Sbjct: 158 VIPELLDLFGLVHFVEPVWWKVGYAKLQGDTLDYLGIPGFRIAGGQGVIVIAICQALLMV 217
Query: 155 FAETKRYMDYISPGSQTKEGSFFGLEAALEGLEP---------GYPGGPLLNPLGLAKDI 205
E RY +E LEP YPGG L +PLGL+KD
Sbjct: 218 GPEYARY-------------------CGIEALEPLGIYLPGDINYPGGALFDPLGLSKDP 258
Query: 206 RNAREWKLKEIKNGLICLV 224
+ K+KEIKNG + +V
Sbjct: 259 VAFEDLKVKEIKNGRLAMV 277
>gi|302856312|ref|XP_002959561.1| hypothetical protein VOLCADRAFT_78398 [Volvox carteri f.
nagariensis]
gi|302856626|ref|XP_002959664.1| hypothetical protein VOLCADRAFT_108699 [Volvox carteri f.
nagariensis]
gi|300254677|gb|EFJ39271.1| hypothetical protein VOLCADRAFT_108699 [Volvox carteri f.
nagariensis]
gi|300254888|gb|EFJ39374.1| hypothetical protein VOLCADRAFT_78398 [Volvox carteri f.
nagariensis]
Length = 254
Score = 87.0 bits (214), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 63/173 (36%), Positives = 85/173 (49%), Gaps = 32/173 (18%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR- 124
P YL G GD+G+D GL DPE+ + Y + EL+HAR+AM G G L +LL G++
Sbjct: 55 PAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCLTPELLSKNGVQF 114
Query: 125 ELPVWYEAGAVEFKFASTRTL--------------FIVQLLLMGFAETKRYMDYISPGSQ 170
VW++AGA F+ L Q++LMG E R ++ G
Sbjct: 115 GEAVWFKAGAQIFQEGGLDYLGNPSLVHAQNIVATLACQVILMGLVEGYR----VNGGP- 169
Query: 171 TKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
A EGL+P YP G +PLGLA D E K+KEIKNG + +
Sbjct: 170 -----------AGEGLDPLYP-GESFDPLGLADDPDTFAELKVKEIKNGRLAM 210
>gi|302854172|ref|XP_002958596.1| hypothetical protein VOLCADRAFT_84524 [Volvox carteri f.
nagariensis]
gi|300256057|gb|EFJ40333.1| hypothetical protein VOLCADRAFT_84524 [Volvox carteri f.
nagariensis]
Length = 254
Score = 87.0 bits (214), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 63/173 (36%), Positives = 85/173 (49%), Gaps = 32/173 (18%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR- 124
P YL G GD+G+D GL DPE+ + Y + EL+HAR+AM G G L +LL G++
Sbjct: 55 PAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCLTPELLSKNGVQF 114
Query: 125 ELPVWYEAGAVEFKFASTRTL--------------FIVQLLLMGFAETKRYMDYISPGSQ 170
VW++AGA F+ L Q++LMG E R ++ G
Sbjct: 115 GEAVWFKAGAQIFQEGGLDYLGNPSLVHAQNIVATLACQVILMGLVEGYR----VNGGP- 169
Query: 171 TKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
A EGL+P YP G +PLGLA D E K+KEIKNG + +
Sbjct: 170 -----------AGEGLDPLYP-GESFDPLGLADDPDTFAELKVKEIKNGRLAM 210
>gi|159474708|ref|XP_001695467.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
gi|158275950|gb|EDP01725.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
Length = 254
Score = 87.0 bits (214), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 64/173 (36%), Positives = 85/173 (49%), Gaps = 32/173 (18%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR- 124
P YL G GD+G+D GL DPE+ + Y + EL+HAR+AM G G L +LL +G +
Sbjct: 55 PAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCLTPELLAKSGTKF 114
Query: 125 ELPVWYEAGAVEFKFASTRTL--------------FIVQLLLMGFAETKRYMDYISPGSQ 170
VW++AGA F L VQ++LMG E R ++ G
Sbjct: 115 GEAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATLAVQVILMGLIEGYR----VNGGP- 169
Query: 171 TKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
A EGL+P YP G +PLGLA D E K+KEIKNG + +
Sbjct: 170 -----------AGEGLDPLYP-GESFDPLGLADDPDTFAELKVKEIKNGRLAM 210
>gi|116782134|gb|ABK22382.1| unknown [Picea sitchensis]
gi|116783875|gb|ABK23122.1| unknown [Picea sitchensis]
gi|116792700|gb|ABK26462.1| unknown [Picea sitchensis]
gi|148905950|gb|ABR16136.1| unknown [Picea sitchensis]
gi|224285016|gb|ACN40237.1| unknown [Picea sitchensis]
Length = 266
Score = 87.0 bits (214), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 69/205 (33%), Positives = 99/205 (48%), Gaps = 17/205 (8%)
Query: 27 SSIGITSAFLPAKSGTTRRYLATVVRAQQRPTWLP--GVDPPPYLDGTLAGDFGFDPLGL 84
S +G + A + + T R ++ RP +L P YL G GD+G+D GL
Sbjct: 27 SKVGASQARITMRR-TVRSAPESIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGL 85
Query: 85 GEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK----- 138
DPE+ + E++H+R+AM G G +F +LL TG++ VW++AGA F
Sbjct: 86 SADPETFAKNRELEVIHSRWAMLGALGCVFPELLAKTGVKFGEAVWFKAGAQIFSEGGLD 145
Query: 139 FASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNP 198
+ L Q +L +A M I EG G EGL+P YPGG +P
Sbjct: 146 YLGNPNLIHAQSILAIWAFQVVLMGLI-------EGYRVGGGPLGEGLDPLYPGG-AFDP 197
Query: 199 LGLAKDIRNAREWKLKEIKNGLICL 223
LGLA D E K+KE+KNG + +
Sbjct: 198 LGLADDPEAFAELKVKELKNGRLAM 222
>gi|159474480|ref|XP_001695353.1| chloropyll a-b binding protein of LHCII type I, chloroplast
precursor [Chlamydomonas reinhardtii]
gi|158275836|gb|EDP01611.1| chloropyll a-b binding protein of LHCII type I, chloroplast
precursor [Chlamydomonas reinhardtii]
Length = 253
Score = 87.0 bits (214), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 64/173 (36%), Positives = 85/173 (49%), Gaps = 32/173 (18%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR- 124
P YL G GD+G+D GL DPE+ + Y + EL+HAR+AM G G L +LL +G +
Sbjct: 54 PAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCLTPELLAKSGTKF 113
Query: 125 ELPVWYEAGAVEFKFASTRTL--------------FIVQLLLMGFAETKRYMDYISPGSQ 170
VW++AGA F L VQ++LMG E R ++ G
Sbjct: 114 GEAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATLAVQVILMGLIEGYR----VNGGP- 168
Query: 171 TKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
A EGL+P YP G +PLGLA D E K+KEIKNG + +
Sbjct: 169 -----------AGEGLDPLYP-GESFDPLGLADDPDTFAELKVKEIKNGRLAM 209
>gi|308801082|ref|XP_003075322.1| PSI-associated light-harvesting chlorophyll a/b binding protein
(IC) [Ostreococcus tauri]
gi|63029299|gb|AAY27548.1| chloroplast light-harvesting complex I protein precursor Lhca1
[Ostreococcus tauri]
gi|116061876|emb|CAL52594.1| PSI-associated light-harvesting chlorophyll a/b binding protein
(IC) [Ostreococcus tauri]
Length = 225
Score = 86.7 bits (213), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 64/179 (35%), Positives = 91/179 (50%), Gaps = 26/179 (14%)
Query: 50 VVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGV 109
RA RP W PG + P +L G L D+GFDPL LGE P++L Y +AEL+HAR+AM GV
Sbjct: 25 TARASARPMWFPGAEAPAHLRGDLPCDYGFDPLNLGEKPDNLARYREAELMHARWAMMGV 84
Query: 110 AGILFTDLL-RVTGIRELPVWYEAGAVEFKFASTRTLFI---VQLLLMGFAETKRYMDYI 165
AG + ++ + P ++A A + LF V +L+ FAE++R
Sbjct: 85 AGAVGVEIAGQGDWASAQPTTWDATAKYLGNETHAPLFAVIGVNGVLVAFAESQR----- 139
Query: 166 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
Q G EA L YPGG +P GL+K ++ K KE+ NG + ++
Sbjct: 140 ----QAATG-----EARL------YPGGS-FDPAGLSKG-KDFETLKRKELANGRVAMM 181
>gi|3928891|gb|AAC79711.1| chlorophyll a/b binding protein [Acetabularia acetabulum]
Length = 251
Score = 86.7 bits (213), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 63/174 (36%), Positives = 84/174 (48%), Gaps = 33/174 (18%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRE 125
P YL G GD+G+D GL DPE+ + Y + EL+HAR+AM G G + ++L G
Sbjct: 51 PSYLTGEFPGDYGWDTAGLSADPETFKKYRETELIHARWAMLGALGCVTPEILAKYGGTS 110
Query: 126 L--PVWYEAGAVEFK--------------FASTRTLFIVQLLLMGFAETKRYMDYISPGS 169
VW+ AGA FK S + I Q++LMG E R ++ G
Sbjct: 111 FGESVWFRAGAQIFKDGGLDYLGSPALIHAQSIGAIVISQVILMGLIEGYR----VNGGP 166
Query: 170 QTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
A EGL+P YP G +PLGLA D E K+KEIKNG + +
Sbjct: 167 ------------AGEGLDPLYP-GESFDPLGLADDPDTFAELKIKEIKNGRLAM 207
>gi|159483767|ref|XP_001699932.1| chlorophyll a-b binding protein [Chlamydomonas reinhardtii]
gi|158281874|gb|EDP07628.1| chlorophyll a-b binding protein [Chlamydomonas reinhardtii]
Length = 399
Score = 86.7 bits (213), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 74/240 (30%), Positives = 108/240 (45%), Gaps = 57/240 (23%)
Query: 24 VNKSSIGIT-----SAFLPAKSGTTRRYLATVVRAQQRPTW-------LPG-VDPPPYLD 70
++KSS+G A LP + A A+++ W LPG + +L
Sbjct: 137 LSKSSVGKQVQEQLEAKLPELQAEADKTRAAHAEARRQSKWYGPSRPRLPGPLGSAEHLI 196
Query: 71 GTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR-ELPVW 129
G +AGD GFDPLGL ++ S Y +AEL+HAR+AM GV G L +LL + G+ PVW
Sbjct: 197 GAIAGDAGFDPLGLSKEQASFAKYQEAELLHARWAMLGVVGCLVPELLALRGVDLGEPVW 256
Query: 130 YEAGAVE--------------FKFASTRTLFIV---QLLLMGFAETKRYMDYIS------ 166
++ GA + F+ A + + ++ Q +LMG E RY+ S
Sbjct: 257 WKVGASKLNSDLTLNWGGIEGFRIAGKQGIGLIAACQAVLMGGPEYARYVGIRSLEPVGV 316
Query: 167 --PGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
PG Q YPGG +PL A D E +KE+KNG + ++
Sbjct: 317 FLPGDQN------------------YPGGGPFDPLNYAADADGFVEQAVKEVKNGRLAML 358
>gi|159474462|ref|XP_001695344.1| chloropyll a-b binding protein of LHCII [Chlamydomonas reinhardtii]
gi|158275827|gb|EDP01602.1| chloropyll a-b binding protein of LHCII [Chlamydomonas reinhardtii]
Length = 254
Score = 86.7 bits (213), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 64/173 (36%), Positives = 84/173 (48%), Gaps = 32/173 (18%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR- 124
P YL G GD+G+D GL DPE+ + Y + EL+HAR+AM G G L +LL G +
Sbjct: 55 PAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCLTPELLAKNGTKF 114
Query: 125 ELPVWYEAGAVEFKFASTRTL--------------FIVQLLLMGFAETKRYMDYISPGSQ 170
VW++AGA F L VQ++LMG E R ++ G
Sbjct: 115 GEAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATLAVQVILMGLIEGYR----VNGGP- 169
Query: 171 TKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
A EGL+P YP G +PLGLA D E K+KEIKNG + +
Sbjct: 170 -----------AGEGLDPLYP-GESFDPLGLADDPDTFAELKVKEIKNGRLAM 210
>gi|87313229|gb|ABD37911.1| light-harvesting chlorophyll-a/b binding protein LhcbM2b
[Chlamydomonas incerta]
Length = 229
Score = 86.7 bits (213), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 63/175 (36%), Positives = 84/175 (48%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
D P YL G GD+G+D GL DPE+ + Y + EL+HAR+AM G G + +LL GI
Sbjct: 28 DTPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCITPELLAKNGI 87
Query: 124 R-ELPVWYEAGAVEFKFASTRTL--------------FIVQLLLMGFAETKRYMDYISPG 168
VW++AG+ F L Q+++MG AE R
Sbjct: 88 PFGEAVWFKAGSQIFAEGGLNYLGNENLVHAQSIIATLAFQVVVMGLAEAYR-------- 139
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G EGL+P +PGG +PLGLA D E K+KEIKNG + +
Sbjct: 140 ---ANGGPLG-----EGLDPLHPGG-AFDPLGLADDPDTFAELKVKEIKNGRLAM 185
>gi|159491492|ref|XP_001703699.1| light-harvesting complex II chlorophyll a-b binding protein M3
[Chlamydomonas reinhardtii]
gi|15430554|dbj|BAB64412.1| light-harvesting chlorophyll-a/b binding protein LhcII-1.3
[Chlamydomonas reinhardtii]
gi|15430562|dbj|BAB64416.1| light-harvesting chlorophyll-a/b binding protein LhcII-1.3
[Chlamydomonas reinhardtii]
gi|158270548|gb|EDO96390.1| light-harvesting complex II chlorophyll a-b binding protein M3
[Chlamydomonas reinhardtii]
Length = 257
Score = 86.7 bits (213), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 63/173 (36%), Positives = 85/173 (49%), Gaps = 32/173 (18%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR- 124
P YL G GD+G+D GL DPE+ + Y + EL+HAR+AM G G + +LL +G +
Sbjct: 58 PAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCITPELLAKSGTQF 117
Query: 125 ELPVWYEAGAVEFKFASTRTL--------------FIVQLLLMGFAETKRYMDYISPGSQ 170
VW++AGA F L VQ++LMG E R ++ G
Sbjct: 118 GEAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATLAVQVILMGLVEGYR----VNGGP- 172
Query: 171 TKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
A EGL+P YP G +PLGLA D E K+KEIKNG + +
Sbjct: 173 -----------AGEGLDPLYP-GESFDPLGLADDPDTFAELKVKEIKNGRLAM 213
>gi|359754919|gb|AEV59649.1| chloroplast photosystem II light harvesting complex protein type
III, partial [Oxytropis maydelliana]
Length = 186
Score = 86.7 bits (213), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 55/146 (37%), Positives = 75/146 (51%), Gaps = 18/146 (12%)
Query: 55 QRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESL------RWYVQAELVHARFAMAG 108
RP W YLDG+L GD+GFDPLGL DPE RW E+++ RFAM G
Sbjct: 42 NRPLWFASEQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPRWLAYGEIINGRFAMLG 100
Query: 109 VAGILFTDLLRVTGI----RELPVWYEAGAVE-----FKFASTRTLFIVQLLLMGFAETK 159
G + ++L G+ LP W++ G + +A TLF+ ++ LMG AE +
Sbjct: 101 AXGAIAPEILGKAGLIPEETALP-WFQTGVIPPAGTYNYWADNYTLFVXEMALMGXAEHR 159
Query: 160 RYMDYISPGSQTKEGSFFGLEAALEG 185
D+ +PGS K+ F GLE L G
Sbjct: 160 XLQDWXNPGSMGKQ-XFLGLEKGLGG 184
>gi|87313231|gb|ABD37913.1| light-harvesting chlorophyll-a/b binding protein LhcbM8
[Chlamydomonas incerta]
Length = 245
Score = 86.3 bits (212), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 63/173 (36%), Positives = 86/173 (49%), Gaps = 32/173 (18%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR- 124
P YL G GD+G+D GL DPE+ + Y + EL+HAR+AM G GI+ +LL G+
Sbjct: 46 PAYLTGEFPGDYGWDTAGLSADPETFQRYRELELIHARWAMLGALGIVTPELLAKNGVPF 105
Query: 125 ELPVWYEAGAVEFKFASTRTL--------------FIVQLLLMGFAETKRYMDYISPGSQ 170
VW++AGA F+ L VQ++L+G E R ++ G
Sbjct: 106 GEAVWFKAGAQIFQEGGLNYLGNPSLIHAQNIVATLAVQVILLGLVEGYR----VNGGP- 160
Query: 171 TKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
A EGL+P YP G +PLGLA D E K+KEIKNG + +
Sbjct: 161 -----------AGEGLDPLYP-GESFDPLGLADDPDTFAELKVKEIKNGRLAM 201
>gi|56122690|gb|AAV74408.1| chloroplast chlorophyll A/B binding protein [Manihot esculenta]
Length = 243
Score = 86.3 bits (212), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 61/173 (35%), Positives = 84/173 (48%), Gaps = 32/173 (18%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR- 124
P YL G GD+G+D GL DPE+ + E++H R+AM G G +F ++L G++
Sbjct: 44 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEVLSKNGVKF 103
Query: 125 ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPGSQ 170
VW++AGA F S ++ VQ++LMGF E R
Sbjct: 104 GEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWAVQVVLMGFVEGYR---------- 153
Query: 171 TKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G EGL+P YPGG +PLGLA D E K+KEIKNG + +
Sbjct: 154 ------VGGGPLGEGLDPIYPGG-AFDPLGLADDPDAFAELKVKEIKNGRLAM 199
>gi|412985627|emb|CCO19073.1| unknown [Bathycoccus prasinos]
Length = 291
Score = 86.3 bits (212), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 69/185 (37%), Positives = 97/185 (52%), Gaps = 23/185 (12%)
Query: 55 QRPTWLPG-----VDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGV 109
QR +LP D P YLDG LAGD+GFDPLGLG D +++ Y AE++HAR+AM V
Sbjct: 71 QRKLYLPSGLLTTADIPSYLDGKLAGDYGFDPLGLGAD-GAIKQYRVAEVIHARWAMLAV 129
Query: 110 AGILFTDLLRVTGIRELPVWYEAGAVEFKFASTR---------TLFIVQLLLMGFAETKR 160
GI+ + L + G W E G V + ++ R ++LMG AE R
Sbjct: 130 PGIVIPEALNIAGGD----WRETGKVFLEGSTGRFGPAELWLGIAVAPLIVLMGGAEKFR 185
Query: 161 YMDYISP-GSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNG 219
+P G +GSF G + A L+P PGGP L+ +A ++ K+KEIKNG
Sbjct: 186 SDPASAPSGFVPFKGSFTGKDFA--KLDPINPGGP-LDFYNVAATPQDLEILKVKEIKNG 242
Query: 220 LICLV 224
+ ++
Sbjct: 243 RLAMI 247
>gi|359806053|ref|NP_001241179.1| uncharacterized protein LOC100815789 [Glycine max]
gi|255638947|gb|ACU19775.1| unknown [Glycine max]
Length = 265
Score = 86.3 bits (212), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 60/173 (34%), Positives = 84/173 (48%), Gaps = 32/173 (18%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR- 124
P YL G GD+G+D GL DPE+ + E++H+R+AM G G F ++L G++
Sbjct: 66 PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCTFPEILEKNGVKF 125
Query: 125 ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPGSQ 170
VW++AGA F S ++ VQ++LMGF E R
Sbjct: 126 GEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWAVQVVLMGFVEGYR---------- 175
Query: 171 TKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G EGL+P YPGG +PLGLA D E K+KE+KNG + +
Sbjct: 176 ------VGGGPLGEGLDPIYPGG-AFDPLGLADDPDAFAELKVKELKNGRLAM 221
>gi|20939|emb|CAA43907.1| chlorophyll a/b-binding protein [Pinus thunbergii]
Length = 266
Score = 86.3 bits (212), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 67/190 (35%), Positives = 90/190 (47%), Gaps = 16/190 (8%)
Query: 42 TTRRYLATVVRAQQRPTWLPGVDP--PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAEL 99
T R ++ RP +L P YL G GD+G+D GL DPE+ + E+
Sbjct: 41 TVRSAPESIWYGPDRPKYLGPFSEGTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEV 100
Query: 100 VHARFAMAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK-----FASTRTLFIVQLLLM 153
+H R+AM G G LF +LL G++ VW++AGA F + L Q +L
Sbjct: 101 IHCRWAMLGALGCLFPELLAKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILA 160
Query: 154 GFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKL 213
+A M I EG G EGL+P YPGG +PLGLA D E K+
Sbjct: 161 IWACQVVLMGLI-------EGYRVGGGPLGEGLDPLYPGG-AFDPLGLADDPEAFAELKV 212
Query: 214 KEIKNGLICL 223
KEIKNG + +
Sbjct: 213 KEIKNGRLAM 222
>gi|302840684|ref|XP_002951894.1| hypothetical protein VOLCADRAFT_81675 [Volvox carteri f.
nagariensis]
gi|300262795|gb|EFJ46999.1| hypothetical protein VOLCADRAFT_81675 [Volvox carteri f.
nagariensis]
Length = 255
Score = 86.3 bits (212), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 62/173 (35%), Positives = 85/173 (49%), Gaps = 32/173 (18%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR- 124
P YL G GD+G+D GL DPE+ + Y + EL+HAR+AM G G + +LL G++
Sbjct: 56 PAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCVTPELLSKNGVQF 115
Query: 125 ELPVWYEAGAVEFKFASTRTL--------------FIVQLLLMGFAETKRYMDYISPGSQ 170
VW++AGA F+ L Q++LMG E R ++ G
Sbjct: 116 GEAVWFKAGAQIFQEGGLDYLGNPSLVHAQNIVATLACQVILMGLVEGYR----VNGGP- 170
Query: 171 TKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
A EGL+P YP G +PLGLA D E K+KEIKNG + +
Sbjct: 171 -----------AGEGLDPLYP-GESFDPLGLADDPDTFAELKVKEIKNGRLAM 211
>gi|145079288|tpg|DAA05908.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm10 [Acetabularia acetabulum]
Length = 224
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 65/176 (36%), Positives = 86/176 (48%), Gaps = 33/176 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
D P YL G GD+G+D GL DPE+ R Y + EL+HAR+AM G G + ++L G
Sbjct: 52 DCPSYLTGEFPGDYGWDTAGLSADPETFRRYREQELIHARWAMLGALGCVTPEILAKYGG 111
Query: 124 REL--PVWYEAGAVEFKFASTRTL---------FIV-----QLLLMGFAETKRYMDYISP 167
VW++AG+ F+ L +I+ Q+LLMG E R
Sbjct: 112 VSFGESVWFKAGSQIFQEGGLDYLGNSSLVHAQYILAILGCQVLLMGAIEAYRV------ 165
Query: 168 GSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G EGL+P YPGG +PLGLA D E K+KEIKNG + +
Sbjct: 166 -----NGGPLG-----EGLDPLYPGGQ-FDPLGLADDPDTFAELKVKEIKNGRLAM 210
>gi|145079397|tpg|DAA05913.1| TPA_inf: chloroplast light-harvesting complex protein CP26
precursor Lhcb5 [Acetabularia acetabulum]
Length = 245
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 64/171 (37%), Positives = 86/171 (50%), Gaps = 28/171 (16%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
D P YL G LAGD+G+DPLGLG+DPE ++ Y EL+HAR+AM AG++ + L G
Sbjct: 82 DVPAYLTGDLAGDYGYDPLGLGKDPEQVQKYRAFELIHARWAMLAAAGMIIPEGLAANGA 141
Query: 124 R-ELPVWYEAG------------AVEFKFASTR----TLFIVQLLLMGFAETKRYMDY-- 164
+ W+E G AV + S + V++ LMG AE R
Sbjct: 142 DIKGATWFETGAEMLNGGTLNYFAVPWAIVSNPLPLFAIVAVEVGLMGAAENYRRTGTGP 201
Query: 165 --ISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKL 213
SPG E S F +GL+ +PGGP +PLGLA D +E K+
Sbjct: 202 KGYSPGVGNFESSVF------DGLDSLHPGGP-FDPLGLADDPEVFQELKV 245
>gi|226492741|ref|NP_001148271.1| chlorophyll a-b binding protein [Zea mays]
gi|195617084|gb|ACG30372.1| chlorophyll a-b binding protein [Zea mays]
gi|238006080|gb|ACR34075.1| unknown [Zea mays]
gi|414871640|tpg|DAA50197.1| TPA: type II light-harvesting chlorophyll a /b-binding protein
isoform 1 [Zea mays]
gi|414871641|tpg|DAA50198.1| TPA: type II light-harvesting chlorophyll a /b-binding protein
isoform 2 [Zea mays]
gi|414871644|tpg|DAA50201.1| TPA: light harvesting chlorophyll binding protein9 isoform 1 [Zea
mays]
gi|414871645|tpg|DAA50202.1| TPA: light harvesting chlorophyll binding protein9 isoform 2 [Zea
mays]
Length = 260
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 66/227 (29%), Positives = 102/227 (44%), Gaps = 34/227 (14%)
Query: 14 SSSSSFICNDVNKSSIGITSAFLPAKSGTTRRYLATVVRAQQRPTWLP--GVDPPPYLDG 71
++SF+ + + G+ + T + ++ RP +L P YL G
Sbjct: 7 HQTTSFLGQALVSRAAGVDAGGRITMRRTVKSVPQSIWYGPDRPKYLGPFSEQTPSYLTG 66
Query: 72 TLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR-ELPVWY 130
GD+G+D GL DPE+ + E++H+R+AM G G +F ++L G++ VW+
Sbjct: 67 EFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILAKNGVKFGEAVWF 126
Query: 131 EAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSF 176
+AGA F S ++ Q++LMGF E R
Sbjct: 127 KAGAQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMGFVEGYR---------------- 170
Query: 177 FGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G EGL+ YPGG +PLGLA D A E K+KE+KNG + +
Sbjct: 171 VGGGPLGEGLDKVYPGG-AFDPLGLADDPDTAAELKVKELKNGRLAM 216
>gi|3560529|gb|AAC34983.1| light harvesting chlorophyll A/B binding protein [Prunus persica]
Length = 265
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 59/174 (33%), Positives = 85/174 (48%), Gaps = 32/174 (18%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR- 124
P YL G GD+G+D GL DPE+ + E++H+R+AM G G +F ++L G++
Sbjct: 66 PSYLTGEFPGDYGWDTAGLSADPETFAKNGELEVIHSRWAMLGALGCVFPEILSKNGVKF 125
Query: 125 ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPGSQ 170
VW++AG+ F S ++ VQ++LMGF E R
Sbjct: 126 GEAVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYR---------- 175
Query: 171 TKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
G EGL+P YPGG +PLGLA D E K+KE+KNG + +
Sbjct: 176 ------VGGGPLGEGLDPLYPGG-AFDPLGLADDPEAFAELKVKELKNGRLAMT 222
>gi|115770|sp|P12328.1|CB21_LEMGI RecName: Full=Chlorophyll a-b binding protein of LHCII type I,
chloroplastic; Short=CAB; Short=LHCP; Flags: Precursor
gi|168290|gb|AAA33392.1| chlorophyll a/b apoprotein [Lemna gibba]
Length = 264
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 61/164 (37%), Positives = 83/164 (50%), Gaps = 14/164 (8%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR- 124
P YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G++
Sbjct: 65 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCIFPELLSKNGVQF 124
Query: 125 ELPVWYEAGAVEFK-----FASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGL 179
VW++AGA F + L Q +L +A M I EG G
Sbjct: 125 GEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWATQVVLMGLI-------EGYRVGG 177
Query: 180 EAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
EGL+P YPGG +PLGLA D E K+KEIKNG + +
Sbjct: 178 GPLGEGLDPLYPGGA-FDPLGLADDPEAFAELKVKEIKNGRLAM 220
>gi|225690804|gb|ACO06088.1| chlorophyll a-b binding protein [Triticum aestivum]
Length = 263
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 61/173 (35%), Positives = 85/173 (49%), Gaps = 32/173 (18%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR- 124
P YL G GD+G+D GL DPE+ + E++H+R+AM G G +F ++L GI+
Sbjct: 64 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGIKF 123
Query: 125 ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPGSQ 170
VW++AGA F S ++ VQ++LMGF E R
Sbjct: 124 GEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFIEGYR---------- 173
Query: 171 TKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G EGL+ YPGG +PLGLA D A E K+KE+KNG + +
Sbjct: 174 ------VGGGPLDEGLDIIYPGG-AFDPLGLADDPDTAAELKVKELKNGRLAM 219
>gi|255581778|ref|XP_002531690.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223528666|gb|EEF30681.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 265
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 60/173 (34%), Positives = 83/173 (47%), Gaps = 32/173 (18%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR- 124
P YL G GD+G+D GL DPE+ + E++H R+AM G G +F ++L G++
Sbjct: 66 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEILAKNGVKF 125
Query: 125 ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPGSQ 170
VW++AGA F S ++ Q++LMGF E R
Sbjct: 126 GEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYR---------- 175
Query: 171 TKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G EGL+P YPGG +PLGLA D E K+KEIKNG + +
Sbjct: 176 ------VGGGPLGEGLDPIYPGG-AFDPLGLADDPEAFAELKVKEIKNGRLAM 221
>gi|195618248|gb|ACG30954.1| chlorophyll a-b binding protein [Zea mays]
Length = 260
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 66/227 (29%), Positives = 102/227 (44%), Gaps = 34/227 (14%)
Query: 14 SSSSSFICNDVNKSSIGITSAFLPAKSGTTRRYLATVVRAQQRPTWLP--GVDPPPYLDG 71
++SF+ + + G+ + T + ++ RP +L P YL G
Sbjct: 7 HQTTSFLGQALVARAAGVDAGDRITMRRTVKSVPQSIWYGPDRPKYLGPFSEQTPSYLTG 66
Query: 72 TLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR-ELPVWY 130
GD+G+D GL DPE+ + E++H+R+AM G G +F ++L G++ VW+
Sbjct: 67 EFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILAKNGVKFGEAVWF 126
Query: 131 EAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSF 176
+AGA F S ++ Q++LMGF E R
Sbjct: 127 KAGAQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMGFVEGYR---------------- 170
Query: 177 FGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G EGL+ YPGG +PLGLA D A E K+KE+KNG + +
Sbjct: 171 VGGGPLGEGLDKVYPGGA-FDPLGLADDPDTAAELKVKELKNGRLAM 216
>gi|1345698|sp|P27518.2|CB21_GOSHI RecName: Full=Chlorophyll a-b binding protein 151, chloroplastic;
AltName: Full=LHCII type II CAB-151; Short=LHCP; Flags:
Precursor
gi|452314|emb|CAA38025.1| chlorophyll ab binding protein [Gossypium hirsutum]
Length = 265
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 65/199 (32%), Positives = 93/199 (46%), Gaps = 34/199 (17%)
Query: 42 TTRRYLATVVRAQQRPTWL-PGVDP-PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAEL 99
T + ++ RP +L P D P YL G GD+G+D GL DPE+ + E+
Sbjct: 40 TVKSAPTSIWYGPDRPKYLGPFSDQIPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEV 99
Query: 100 VHARFAMAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEF--------------KFASTRT 144
+H R+AM G G +F ++L G++ VW++AG+ F S
Sbjct: 100 IHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILA 159
Query: 145 LFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKD 204
++ Q++LMGF E R G EGL+P YPGG +PLGLA D
Sbjct: 160 IWACQVVLMGFVEGYR----------------VGGGPLGEGLDPIYPGG-AFDPLGLADD 202
Query: 205 IRNAREWKLKEIKNGLICL 223
E K+KEIKNG + +
Sbjct: 203 PDAFAELKVKEIKNGRLAM 221
>gi|149392118|gb|ABR25925.1| chloroplast chlorophyll a-b binding protein [Oryza sativa Indica
Group]
Length = 171
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 56/133 (42%), Positives = 77/133 (57%), Gaps = 13/133 (9%)
Query: 103 RFAMAGVAGILFTDLLRVTGI----RELPVWYEAGAVE-----FKFASTRTLFIVQLLLM 153
R AM GV G++ +LL G+ +P W++ G + +A TLF+ +L L+
Sbjct: 2 RTAMMGVVGMVAPELLGKLGLVPAETAIP-WFQTGVIPPAGTYTYWADPYTLFVFELALV 60
Query: 154 GFAETKRYMDYISPGSQTKEGSFFGLEAALEGL-EPGYPGGPLLNPLGLA-KDIRNAREW 211
GFAE +R+ D+ +PGS K+ F GLE L G EP YPGGPL NPLG K +E
Sbjct: 61 GFAEHRRFQDWYTPGSMGKQ-YFLGLEKYLAGSGEPAYPGGPLFNPLGFGTKSEAEMKEL 119
Query: 212 KLKEIKNGLICLV 224
KLKEIKNG + ++
Sbjct: 120 KLKEIKNGRLAML 132
>gi|302840162|ref|XP_002951637.1| hypothetical protein VOLCADRAFT_109135 [Volvox carteri f.
nagariensis]
gi|300263246|gb|EFJ47448.1| hypothetical protein VOLCADRAFT_109135 [Volvox carteri f.
nagariensis]
Length = 251
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 63/176 (35%), Positives = 85/176 (48%), Gaps = 33/176 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLL-RVTG 122
D P YL G GD+G+D GL DPE+ + Y + EL+HAR+AM G G + +LL + G
Sbjct: 49 DTPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCVTPELLSKYAG 108
Query: 123 IR-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISP 167
+ VW++AGA F S Q+++MG AE R
Sbjct: 109 VSFGEAVWFKAGAQIFAEGGLNYLGNENLVHAQSIIATLAFQVVVMGLAEAYR------- 161
Query: 168 GSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G EGL+P +PGG +PLGLA D E K+KEIKNG + +
Sbjct: 162 ----ANGGPLG-----EGLDPLHPGG-AFDPLGLADDPDTFAELKVKEIKNGRLAM 207
>gi|302842165|ref|XP_002952626.1| hypothetical protein VOLCADRAFT_81918 [Volvox carteri f.
nagariensis]
gi|300261970|gb|EFJ46179.1| hypothetical protein VOLCADRAFT_81918 [Volvox carteri f.
nagariensis]
Length = 251
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 63/176 (35%), Positives = 85/176 (48%), Gaps = 33/176 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLL-RVTG 122
D P YL G GD+G+D GL DPE+ + Y + EL+HAR+AM G G + +LL + G
Sbjct: 49 DTPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCVTPELLSKYAG 108
Query: 123 IR-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISP 167
+ VW++AGA F S Q+++MG AE R
Sbjct: 109 VSFGEAVWFKAGAQIFAEGGLNYLGNENLVHAQSIIATLAFQVVVMGLAEAYR------- 161
Query: 168 GSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G EGL+P +PGG +PLGLA D E K+KEIKNG + +
Sbjct: 162 ----ANGGPLG-----EGLDPLHPGG-AFDPLGLADDPDTFAELKVKEIKNGRLAM 207
>gi|302851938|ref|XP_002957491.1| hypothetical protein VOLCADRAFT_84135 [Volvox carteri f.
nagariensis]
gi|300257133|gb|EFJ41385.1| hypothetical protein VOLCADRAFT_84135 [Volvox carteri f.
nagariensis]
Length = 254
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 62/173 (35%), Positives = 85/173 (49%), Gaps = 32/173 (18%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR- 124
P YL G GD+G+D GL DPE+ + Y + EL+HAR+AM G G + +LL G++
Sbjct: 55 PAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCVTPELLSKNGVQF 114
Query: 125 ELPVWYEAGAVEFKFASTRTL--------------FIVQLLLMGFAETKRYMDYISPGSQ 170
VW++AGA F+ L Q++LMG E R ++ G
Sbjct: 115 GEAVWFKAGAQIFQEGGLDYLGNPSLVHAQNIVATLACQVILMGLVEGYR----VNGGP- 169
Query: 171 TKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
A EGL+P YP G +PLGLA D E K+KEIKNG + +
Sbjct: 170 -----------AGEGLDPLYP-GESFDPLGLADDPDTFAELKVKEIKNGRLAM 210
>gi|302835026|ref|XP_002949075.1| hypothetical protein VOLCADRAFT_80470 [Volvox carteri f.
nagariensis]
gi|300265820|gb|EFJ50010.1| hypothetical protein VOLCADRAFT_80470 [Volvox carteri f.
nagariensis]
Length = 252
Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 63/176 (35%), Positives = 85/176 (48%), Gaps = 33/176 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLL-RVTG 122
D P YL G GD+G+D GL DPE+ + Y + EL+HAR+AM G G + +LL + G
Sbjct: 50 DTPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCVTPELLSKYAG 109
Query: 123 IR-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISP 167
+ VW++AGA F S Q+++MG AE R
Sbjct: 110 VSFGEAVWFKAGAQIFAEGGLNYLGNENLVHAQSIIATLAFQVVVMGLAEAYR------- 162
Query: 168 GSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G EGL+P +PGG +PLGLA D E K+KEIKNG + +
Sbjct: 163 ----ANGGPLG-----EGLDPLHPGG-AFDPLGLADDPDTFAELKVKEIKNGRLAM 208
>gi|302842321|ref|XP_002952704.1| light-harvesting chlorophyll a/b-binding protein [Volvox carteri f.
nagariensis]
gi|300262048|gb|EFJ46257.1| light-harvesting chlorophyll a/b-binding protein [Volvox carteri f.
nagariensis]
Length = 251
Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 63/176 (35%), Positives = 85/176 (48%), Gaps = 33/176 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLL-RVTG 122
D P YL G GD+G+D GL DPE+ + Y + EL+HAR+AM G G + +LL + G
Sbjct: 49 DTPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCVTPELLSKYAG 108
Query: 123 IR-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISP 167
+ VW++AGA F S Q+++MG AE R
Sbjct: 109 VSFGEAVWFKAGAQIFAEGGLNYLGNENLVHAQSIIATLAFQVVVMGLAEAYR------- 161
Query: 168 GSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G EGL+P +PGG +PLGLA D E K+KEIKNG + +
Sbjct: 162 ----ANGGPLG-----EGLDPLHPGG-AFDPLGLADDPDTFAELKVKEIKNGRLAM 207
>gi|87313207|gb|ABD37900.1| light-harvesting chlorophyll-a/b binding protein LhcbM3
[Acutodesmus obliquus]
Length = 248
Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 61/171 (35%), Positives = 85/171 (49%), Gaps = 28/171 (16%)
Query: 68 YLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR-EL 126
YL G GD+G+D GL DP++ Y + E++HAR+AM G G + +LL G+
Sbjct: 47 YLTGEFPGDYGWDTAGLSADPQTFSRYREVEVIHARWAMLGALGCITPELLAKNGVPFGE 106
Query: 127 PVWYEAGAVEFKFASTRTL--------------FIVQLLLMGFAETKRYMDYISPGSQTK 172
VW++AGA F+ L VQ++LMG AE R + +PG
Sbjct: 107 AVWFKAGAQIFQDGGLNYLGNENLVHAQSILATLAVQVILMGAAEAYR-ANGGAPGG--- 162
Query: 173 EGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
FG E L+ YPGG +PLGLA D E K+KE+KNG + +
Sbjct: 163 ----FG-----EDLDSLYPGGKFFDPLGLADDPDTLAELKVKELKNGRLAM 204
>gi|20178|emb|CAA32108.1| chlorophyll a/b-binding preprotein (AA -31 to 235) [Oryza sativa]
Length = 266
Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 61/179 (34%), Positives = 88/179 (49%), Gaps = 32/179 (17%)
Query: 60 LPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLR 119
L G +PP YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL
Sbjct: 61 LSGREPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLA 120
Query: 120 VTGIR-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDY 164
G++ VW++AG+ F S ++ VQ++LMG E R
Sbjct: 121 RNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRI--- 177
Query: 165 ISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E ++P YPGG +PLGLA D E K+K+IKNG + +
Sbjct: 178 --------AGGPLG-----EVVDPLYPGG-AFDPLGLADDPEACAELKVKKIKNGRLAM 222
>gi|1262847|gb|AAB19040.1| type 2 light-harvesting chlorophyll a/b-binding polypeptide,
partial [Pinus palustris]
Length = 246
Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 66/190 (34%), Positives = 91/190 (47%), Gaps = 16/190 (8%)
Query: 42 TTRRYLATVVRAQQRPTWLP--GVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAEL 99
T R ++ RP +L P YL G GD+G+D GL DPE+ + E+
Sbjct: 21 TVRSAPESIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEV 80
Query: 100 VHARFAMAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK-----FASTRTLFIVQLLLM 153
+H+R+AM G G +F +LL G++ VW++AGA F + L Q +L
Sbjct: 81 IHSRWAMLGALGCVFPELLAKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILA 140
Query: 154 GFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKL 213
+A M I EG G EGL+P YPGG +PLGLA D E K+
Sbjct: 141 IWACQVVLMGLI-------EGYRVGGGPLGEGLDPLYPGG-AFDPLGLADDPEAFAELKV 192
Query: 214 KEIKNGLICL 223
KEIKNG + +
Sbjct: 193 KEIKNGRLAM 202
>gi|218174|dbj|BAA00537.1| type II light-harvesting chlorophyll a/b-binding protein [Oryza
sativa Japonica Group]
Length = 263
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 60/173 (34%), Positives = 84/173 (48%), Gaps = 32/173 (18%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR- 124
P YL G GD+G+D GL DPE+ + EL+H+R+AM G G +F ++L G++
Sbjct: 64 PSYLTGEFPGDYGWDTAGLSADPETFARNRELELIHSRWAMLGALGCVFPEILSKNGVKF 123
Query: 125 ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPGSQ 170
VW++AGA F S ++ VQ++LMGF E R
Sbjct: 124 GEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYR---------- 173
Query: 171 TKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G EGL+ YPGG +PLGLA D E K+KE+KNG + +
Sbjct: 174 ------VGGGPLGEGLDKVYPGG-AFDPLGLADDPDTFAELKVKELKNGRLAM 219
>gi|74272671|gb|ABA01131.1| chloroplast light-harvesting chlorophyll-a/b binding protein
[Chlamydomonas incerta]
Length = 257
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 63/173 (36%), Positives = 83/173 (47%), Gaps = 32/173 (18%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR- 124
P YL G GD+G+D GL DPE+ + Y + EL+HAR+AM G G L +LL G +
Sbjct: 58 PAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCLTPELLAKNGTQF 117
Query: 125 ELPVWYEAGAVEFKFASTRTL--------------FIVQLLLMGFAETKRYMDYISPGSQ 170
VW++AGA F L Q++LMG E R ++ G
Sbjct: 118 GEAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATLACQVILMGLVEGYR----VNGGP- 172
Query: 171 TKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
A EGL+P YP G +PLGLA D E K+KEIKNG + +
Sbjct: 173 -----------AGEGLDPLYP-GESFDPLGLADDPDTFAELKVKEIKNGRLAM 213
>gi|224064850|ref|XP_002301582.1| light-harvesting complex II protein Lhcb2 [Populus trichocarpa]
gi|118486872|gb|ABK95270.1| unknown [Populus trichocarpa]
gi|118488008|gb|ABK95825.1| unknown [Populus trichocarpa]
gi|222843308|gb|EEE80855.1| light-harvesting complex II protein Lhcb2 [Populus trichocarpa]
Length = 265
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 58/164 (35%), Positives = 84/164 (51%), Gaps = 14/164 (8%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR- 124
P YL G GD+G+D GL DPE+ + E++H+R+AM G G +F ++L G++
Sbjct: 66 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILAKNGVKF 125
Query: 125 ELPVWYEAGAVEFK-----FASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGL 179
VW++AGA F + L Q +L +A M ++ EG G
Sbjct: 126 GESVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWASQVVLMGFV-------EGYRVGG 178
Query: 180 EAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
EGL+P YPGG +PLGLA D E K+KE+KNG + +
Sbjct: 179 GPLGEGLDPIYPGG-AFDPLGLADDPDAFAELKVKELKNGRLAM 221
>gi|125563122|gb|EAZ08502.1| hypothetical protein OsI_30775 [Oryza sativa Indica Group]
Length = 321
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 65/215 (30%), Positives = 96/215 (44%), Gaps = 48/215 (22%)
Query: 39 KSGTTRRYLATVVRAQQRPTWLPGV--DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQ 96
+S + A+ +RP WL V + P +L G GD+GFD GLG DP + Y
Sbjct: 89 RSAARQARTASSWYGDERPRWLGPVPYEYPAHLTGEYPGDYGFDIAGLGRDPVAFANYFN 148
Query: 97 AELVHARFAMAGVAGILFTDLLRVTGIREL--PVWYEAGAVE-------------FKFAS 141
E++H R+AM G++ +LL + + PVW++ G + F+ A
Sbjct: 149 FEILHCRWAMLAALGVVVPELLDLFEVVHFVEPVWWKVGYAKLQGDTLDYLGIPGFRIAG 208
Query: 142 TRTLFIV---QLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEP---------G 189
+ + ++ Q LLM E RY +E LEP
Sbjct: 209 GQGVIVIAICQALLMVGPEYARY-------------------CGIEALEPLGLYLPGDIN 249
Query: 190 YPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
YPGG L +PLGL+KD + K+KEIKNG + +V
Sbjct: 250 YPGGALFDPLGLSKDPVAFEDLKVKEIKNGRLAMV 284
>gi|361067651|gb|AEW08137.1| Pinus taeda anonymous locus 2_784_02 genomic sequence
gi|383160502|gb|AFG62791.1| Pinus taeda anonymous locus 2_784_02 genomic sequence
gi|383160504|gb|AFG62792.1| Pinus taeda anonymous locus 2_784_02 genomic sequence
gi|383160506|gb|AFG62793.1| Pinus taeda anonymous locus 2_784_02 genomic sequence
gi|383160508|gb|AFG62794.1| Pinus taeda anonymous locus 2_784_02 genomic sequence
Length = 132
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/94 (48%), Positives = 62/94 (65%), Gaps = 3/94 (3%)
Query: 132 AGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGL-EPGY 190
AG + +A TLF++++ LMGFAE +R DY +PGS K+ F GLE L G P Y
Sbjct: 1 AGTYNY-WADPFTLFVLEMALMGFAEHRRLQDYRNPGSMGKQ-YFLGLEKYLGGSGNPAY 58
Query: 191 PGGPLLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
PGGPL NPLG KD ++ +E KLKE+KNG + ++
Sbjct: 59 PGGPLFNPLGFGKDEKSMKELKLKEVKNGRLAML 92
>gi|358248712|ref|NP_001240183.1| uncharacterized protein LOC100793702 [Glycine max]
gi|255635740|gb|ACU18219.1| unknown [Glycine max]
Length = 265
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 59/173 (34%), Positives = 84/173 (48%), Gaps = 32/173 (18%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR- 124
P YL G GD+G+D GL DPE+ + E++H+R+AM G G F ++L G++
Sbjct: 66 PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCTFPEILEKNGVKF 125
Query: 125 ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPGSQ 170
VW++AG+ F S ++ VQ++LMGF E R
Sbjct: 126 GEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAVQVVLMGFVEGYR---------- 175
Query: 171 TKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G EGL+P YPGG +PLGLA D E K+KE+KNG + +
Sbjct: 176 ------VGGGPLGEGLDPIYPGG-AFDPLGLADDPDAFAELKVKELKNGRLAM 221
>gi|302849646|ref|XP_002956352.1| hypothetical protein VOLCADRAFT_77072 [Volvox carteri f.
nagariensis]
gi|300258258|gb|EFJ42496.1| hypothetical protein VOLCADRAFT_77072 [Volvox carteri f.
nagariensis]
Length = 250
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 63/176 (35%), Positives = 85/176 (48%), Gaps = 33/176 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLL-RVTG 122
D P YL G GD+G+D GL DPE+ + Y + EL+HAR+AM G G + +LL + G
Sbjct: 48 DVPSYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCVTPELLSKYAG 107
Query: 123 IR-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISP 167
+ VW++AGA F S Q+++MG AE R
Sbjct: 108 VSFGEAVWFKAGAQIFAEGGLNYLGNENLVHAQSIIATLAFQVVVMGLAEAYR------- 160
Query: 168 GSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G EGL+P +PGG +PLGLA D E K+KEIKNG + +
Sbjct: 161 ----ANGGPLG-----EGLDPLHPGG-AFDPLGLADDPDTFAELKVKEIKNGRLAM 206
>gi|145079211|tpg|DAA05904.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca3 [Acetabularia acetabulum]
Length = 202
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/142 (38%), Positives = 77/142 (54%), Gaps = 17/142 (11%)
Query: 59 WLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESL------RWYVQAELVHARFAMAGVAGI 112
W YLDG+LAGDFGFDPLGL DPE W AE+++ R+AM G AG
Sbjct: 59 WFASEQSLSYLDGSLAGDFGFDPLGL-LDPEGAGGLVTPEWLKYAEIMNGRWAMLGAAGC 117
Query: 113 LFTDLL-RVTGIRELP--VWYEAGAV------EFKFASTRTLFIVQLLLMGFAETKRYMD 163
+ + L ++ I E +W+++G + + + S+ T+F V LM FAE +R D
Sbjct: 118 IAPEFLGKLGAIPESTALIWWKSGVIPPAGDTDIYWGSSWTVFWVNACLMNFAELRRLQD 177
Query: 164 YISPGSQTKEGSFFGLEAALEG 185
Y +PGS K+G G+E + G
Sbjct: 178 YKNPGSMNKQG-LLGIEKLMAG 198
>gi|16805332|gb|AAL29886.1|M97171_1 chlorophyll a/b binding protein type II [Glycine max]
Length = 265
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 59/173 (34%), Positives = 84/173 (48%), Gaps = 32/173 (18%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR- 124
P YL G GD+G+D GL DPE+ + E++H+R+AM G G F ++L G++
Sbjct: 66 PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCTFPEILEKNGVKF 125
Query: 125 ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPGSQ 170
VW++AG+ F S ++ VQ++LMGF E R
Sbjct: 126 GEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAVQVVLMGFVEGYR---------- 175
Query: 171 TKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G EGL+P YPGG +PLGLA D E K+KE+KNG + +
Sbjct: 176 ------VGGGPLGEGLDPIYPGG-AFDPLGLADDPDAFAELKVKELKNGRLAM 221
>gi|227612|prf||1707316B chlorophyll a/b binding protein 2
Length = 263
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 60/173 (34%), Positives = 84/173 (48%), Gaps = 32/173 (18%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR- 124
P YL G GD+G+D GL DPE+ + EL+H+R+AM G G +F ++L G++
Sbjct: 64 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELELIHSRWAMLGALGCVFPEILSKNGVKF 123
Query: 125 ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPGSQ 170
VW++AGA F S ++ VQ++LMGF E R
Sbjct: 124 GEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYR---------- 173
Query: 171 TKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G EGL+ YPGG +PLGLA D E K+KE+KNG + +
Sbjct: 174 ------VGGGPLGEGLDKVYPGG-AFDPLGLADDPDTFAELKVKELKNGRLAM 219
>gi|145079190|tpg|DAA05903.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm11 [Acetabularia acetabulum]
Length = 224
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 63/176 (35%), Positives = 83/176 (47%), Gaps = 33/176 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
D P YL G GD+G+D GL DPE+ R Y + EL+HAR+AM G G + ++L G
Sbjct: 52 DCPSYLTGEFPGDYGWDTAGLSADPETFRRYREQELIHARWAMLGALGCVTPEILSKYGG 111
Query: 124 REL--PVWYEAGAVEFK--------------FASTRTLFIVQLLLMGFAETKRYMDYISP 167
VW++AG+ F+ S + Q+LLMG E R
Sbjct: 112 VSFGESVWFKAGSQIFQEGGLDYLGNSNLVHAQSILAILGCQVLLMGAIEAYRV------ 165
Query: 168 GSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G EGL+P YPG +PLGLA D E K+KEIKNG + +
Sbjct: 166 -----NGGPLG-----EGLDPLYPGDK-FDPLGLADDPDTFAELKIKEIKNGRLAM 210
>gi|302842163|ref|XP_002952625.1| hypothetical protein VOLCADRAFT_102070 [Volvox carteri f.
nagariensis]
gi|300261969|gb|EFJ46178.1| hypothetical protein VOLCADRAFT_102070 [Volvox carteri f.
nagariensis]
Length = 270
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 63/176 (35%), Positives = 85/176 (48%), Gaps = 33/176 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLL-RVTG 122
D P YL G GD+G+D GL DPE+ + Y + EL+HAR+AM G G + +LL + G
Sbjct: 68 DTPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCVTPELLSKYAG 127
Query: 123 IR-ELPVWYEAGAVEFKFASTRTL--------------FIVQLLLMGFAETKRYMDYISP 167
+ VW++AGA F L Q+++MG AE R
Sbjct: 128 VSFGEAVWFKAGAQIFAEGGLNYLGNENLVHAQSIIATLAFQVVVMGLAEAYR------- 180
Query: 168 GSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G EGL+P +PGG +PLGLA D E K+KEIKNG + +
Sbjct: 181 ----ANGGPLG-----EGLDPLHPGG-AFDPLGLADDPDTFAELKVKEIKNGRLAM 226
>gi|145079310|tpg|DAA05909.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm3 [Acetabularia acetabulum]
Length = 208
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 68/188 (36%), Positives = 88/188 (46%), Gaps = 36/188 (19%)
Query: 55 QRPTWL-PGVDP--PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAG 111
R WL P D P YL G GD+G+D GL DPE+ + Y + EL+HARFAM G G
Sbjct: 35 NRAKWLGPYSDGAVPSYLTGEFPGDYGWDTAGLSADPETFKKYRETELIHARFAMLGALG 94
Query: 112 ILFTDLLRVTGIREL--PVWYEAGAVEFK--------------FASTRTLFIVQLLLMGF 155
+ +LL G VW+ AGA F+ S + I Q++LMG
Sbjct: 95 CVTPELLAKYGGVSFGESVWFRAGAQIFQEGGLDYLGSPALIHAQSIGAIVISQVVLMGL 154
Query: 156 AETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKE 215
E R ++ G A EGL+ YP G +PLGLA D E K+KE
Sbjct: 155 VEGYR----VNGGP------------AGEGLDSLYP-GESFDPLGLADDPDTFAELKIKE 197
Query: 216 IKNGLICL 223
IKNG + +
Sbjct: 198 IKNGRLAM 205
>gi|15231990|ref|NP_187506.1| chlorophyll a-b binding protein CP29.2 [Arabidopsis thaliana]
gi|38503262|sp|Q9XF88.1|CB4B_ARATH RecName: Full=Chlorophyll a-b binding protein CP29.2,
chloroplastic; AltName: Full=LHCB4.2; AltName:
Full=LHCII protein 4.2; Flags: Precursor
gi|4741954|gb|AAD28774.1|AF134127_1 Lhcb4.2 protein [Arabidopsis thaliana]
gi|6403491|gb|AAF07831.1|AC010871_7 putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|17473745|gb|AAL38316.1| putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|20148559|gb|AAM10170.1| putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|332641177|gb|AEE74698.1| chlorophyll a-b binding protein CP29.2 [Arabidopsis thaliana]
Length = 287
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 69/258 (26%), Positives = 107/258 (41%), Gaps = 80/258 (31%)
Query: 20 ICNDVNKSSIGITSAFLPAKSGTTRRYLATVVRAQQRPTWLPGVDPPPYLDGTLAGDFGF 79
+ +D++ +S T+ F + + TV+ RP W PG P YLDG+L GD+GF
Sbjct: 18 VVSDISSNSSRFTARFGFGTKKASPKKAKTVI--SDRPLWFPGAKSPEYLDGSLVGDYGF 75
Query: 80 DPLGLGE--------------------------------DPES-----------LRWYVQ 96
DP GLG+ DP+S L+ + +
Sbjct: 76 DPFGLGKPAEYLQFDLDSLDQNLAKNLYGEVIGTRTEAVDPKSTPFQPYSEVFGLQRFRE 135
Query: 97 AELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFAST----------RTLF 146
EL+H R+AM G + + L TG+ W +AG VE S+ TL
Sbjct: 136 CELIHGRWAMLATLGAITVEWL--TGV----TWQDAGKVELVDGSSYLGQPLPFSISTLI 189
Query: 147 IVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIR 206
+++L++G+ E +R A L+ + YPGG +PLGLA D
Sbjct: 190 WIEVLVIGYIEFQR-------------------NAELDSEKRLYPGGKFFDPLGLASDPV 230
Query: 207 NAREWKLKEIKNGLICLV 224
+ +L EIK+ + +V
Sbjct: 231 KKAQLQLAEIKHARLAMV 248
>gi|242038937|ref|XP_002466863.1| hypothetical protein SORBIDRAFT_01g015400 [Sorghum bicolor]
gi|241920717|gb|EER93861.1| hypothetical protein SORBIDRAFT_01g015400 [Sorghum bicolor]
Length = 262
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 59/173 (34%), Positives = 84/173 (48%), Gaps = 32/173 (18%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR- 124
P YL G GD+G+D GL DPE+ + E++H+R+AM G G +F ++L G++
Sbjct: 63 PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILAKNGVKF 122
Query: 125 ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPGSQ 170
VW++AGA F S ++ Q++LMGF E R
Sbjct: 123 GEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMGFVEGYR---------- 172
Query: 171 TKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G EGL+ YPGG +PLGLA D A E K+KE+KNG + +
Sbjct: 173 ------VGGGPLGEGLDKVYPGG-AFDPLGLADDPDTAAELKVKELKNGRLAM 218
>gi|168025870|ref|XP_001765456.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162683306|gb|EDQ69717.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 266
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 64/186 (34%), Positives = 89/186 (47%), Gaps = 34/186 (18%)
Query: 55 QRPTWLP--GVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGI 112
RP WL + P YL+G AGD+G+D GL DPE+ + E++HAR+AM G G
Sbjct: 54 DRPKWLGPFSGETPSYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGC 113
Query: 113 LFTDLLRVTGIR-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAE 157
L +LL +G++ VW++AGA F S ++ Q++LMG E
Sbjct: 114 LTPELLAKSGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWASQVILMGAVE 173
Query: 158 TKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIK 217
R G G + +P YPGG +PLGLA D E K+KEIK
Sbjct: 174 GYRVA-----------GGPLG-----DVTDPIYPGGS-FDPLGLADDPDTFAELKVKEIK 216
Query: 218 NGLICL 223
NG + +
Sbjct: 217 NGRLAM 222
>gi|115797|sp|P27520.1|CB215_PEA RecName: Full=Chlorophyll a-b binding protein 215, chloroplastic;
AltName: Full=LHCII type II CAB-215; Short=LHCP; Flags:
Precursor
gi|20658|emb|CAA40365.1| chlorophyll a/b-binding protein [Pisum sativum]
Length = 265
Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 58/164 (35%), Positives = 84/164 (51%), Gaps = 14/164 (8%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR- 124
P YL G GD+G+D GL DPE+ + E++H+R+AM G G F +LL G++
Sbjct: 66 PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCTFPELLEKNGVKF 125
Query: 125 ELPVWYEAGAVEF-----KFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGL 179
VW++AG+ F + L Q +L +A M ++ EG G
Sbjct: 126 GEAVWFKAGSQIFAEGGLDYLGNPNLIHAQSILAIWATQVVLMGFV-------EGYRVGG 178
Query: 180 EAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
EGL+P YPGG +PLGLA D + E K+KE+KNG + +
Sbjct: 179 GPLGEGLDPLYPGG-AFDPLGLADDPDSFAELKVKELKNGRLAM 221
>gi|302849997|ref|XP_002956527.1| hypothetical protein VOLCADRAFT_107271 [Volvox carteri f.
nagariensis]
gi|300258225|gb|EFJ42464.1| hypothetical protein VOLCADRAFT_107271 [Volvox carteri f.
nagariensis]
Length = 238
Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/173 (35%), Positives = 84/173 (48%), Gaps = 32/173 (18%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR- 124
P YL G GD+G+D GL DPE+ + Y + EL+HAR+AM G G + LL G++
Sbjct: 55 PAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCVTPKLLSKNGVQF 114
Query: 125 ELPVWYEAGAVEFKFASTRTL--------------FIVQLLLMGFAETKRYMDYISPGSQ 170
+W++AGA F+ L Q++LMG E R ++ G
Sbjct: 115 SEALWFKAGAQIFQEGGLDYLGNLSLVHAQNIVATLACQVILMGLVEGYR----VNGGP- 169
Query: 171 TKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
A EGL+P YPG +PLGLA D E K+KEIKNG + +
Sbjct: 170 -----------AGEGLDPLYPGKS-FDPLGLADDPDTFAELKVKEIKNGRLAM 210
>gi|56809381|gb|AAW31512.1| light-harvesting chlorophyll-a/b binding protein Lhcb2 [Pisum
sativum]
Length = 265
Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 58/164 (35%), Positives = 84/164 (51%), Gaps = 14/164 (8%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR- 124
P YL G GD+G+D GL DPE+ + E++H+R+AM G G F +LL G++
Sbjct: 66 PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCTFPELLEKNGVKF 125
Query: 125 ELPVWYEAGAVEF-----KFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGL 179
VW++AG+ F + L Q +L +A M ++ EG G
Sbjct: 126 GEAVWFKAGSQIFAEGGLDYLGNPNLIHAQSILAIWATQVVLMGFV-------EGYRVGG 178
Query: 180 EAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
EGL+P YPGG +PLGLA D + E K+KE+KNG + +
Sbjct: 179 GPLGEGLDPLYPGG-AFDPLGLADDPDSFAELKVKELKNGRLAM 221
>gi|146150144|gb|ABQ02463.1| chloroplast chlorophyll a/b binding protein [Phyllostachys edulis]
Length = 263
Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 58/164 (35%), Positives = 84/164 (51%), Gaps = 14/164 (8%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR- 124
P YL G AGD+G+D GL DPE+ + E++H+R+AM G G +F ++L G++
Sbjct: 64 PSYLTGEFAGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNGVKF 123
Query: 125 ELPVWYEAGAVEFK-----FASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGL 179
VW++AGA F + L Q +L +A M ++ EG G
Sbjct: 124 GEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWASQVVLMGFV-------EGYRVGG 176
Query: 180 EAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
EGL+ YPGG +PLGLA D E K+KE+KNG + +
Sbjct: 177 GPLGEGLDKVYPGG-AFDPLGLADDPDTFAELKVKELKNGSLAM 219
>gi|365268967|gb|AEW70716.1| light harvesting chlorophyll a-b binding protein 2-1 [Phyllostachys
edulis]
Length = 263
Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 58/164 (35%), Positives = 84/164 (51%), Gaps = 14/164 (8%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR- 124
P YL G AGD+G+D GL DPE+ + E++H+R+AM G G +F ++L G++
Sbjct: 64 PSYLTGEFAGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNGVKF 123
Query: 125 ELPVWYEAGAVEFK-----FASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGL 179
VW++AGA F + L Q +L +A M ++ EG G
Sbjct: 124 GEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWASQVVLMGFV-------EGYRVGG 176
Query: 180 EAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
EGL+ YPGG +PLGLA D E K+KE+KNG + +
Sbjct: 177 GPLGEGLDKVYPGGA-FDPLGLADDPDTFAELKVKELKNGRLAM 219
>gi|37780998|gb|AAP35043.1| chlorophyll a/b binding protein, partial [Vitis vinifera]
Length = 166
Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/98 (45%), Positives = 65/98 (66%), Gaps = 3/98 (3%)
Query: 128 VWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGL- 186
V+ AG + +A TLF+ ++ LMGFAE +R+ D+ +PGS K+ F GLE L G
Sbjct: 31 VFPPAGTYNY-WADPYTLFVFEMALMGFAEHRRFQDWANPGSMGKQ-YFLGLEKYLGGSG 88
Query: 187 EPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
+P YPGGPL NPLG KD ++ ++ KLKE+KNG + ++
Sbjct: 89 DPAYPGGPLFNPLGFGKDEKSLKDLKLKEVKNGRLAML 126
>gi|157965837|gb|ABW06955.1| chloroplast light-harvesting complex II protein precursor [Euglena
gracilis]
Length = 613
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 61/173 (35%), Positives = 82/173 (47%), Gaps = 32/173 (18%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI-R 124
P YL G GD+G+D GL DP + Y +AEL+HAR+AM G G++F + L G+
Sbjct: 157 PSYLTGEFPGDYGWDTAGLAADPITFAKYREAELIHARWAMLGALGVVFPEALAKAGVPL 216
Query: 125 ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPGSQ 170
PVW++AGA F S + Q++LMG AE R
Sbjct: 217 AEPVWFKAGAQIFSEGGLDYLGNSNLVHAQSILAILAFQVVLMGLAEAYRV--------- 267
Query: 171 TKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E + YPGG +PLGLA D E K+KE+KNG + +
Sbjct: 268 --NGGPLG-----EDSDALYPGG-AFDPLGLADDPETFAELKVKELKNGRLAM 312
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 61/173 (35%), Positives = 82/173 (47%), Gaps = 32/173 (18%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI-R 124
P YL G GD+G+D GL DP + Y +AEL+HAR+AM G G++F + L G+
Sbjct: 397 PSYLTGEFPGDYGWDTAGLAADPITFAKYREAELIHARWAMLGALGVVFPEALAKAGVPL 456
Query: 125 ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPGSQ 170
PVW++AGA F S + Q++LMG AE R
Sbjct: 457 AEPVWFKAGAQIFSEGGLDYLGNSNLVHAQSILAILAFQVVLMGLAEAYRV--------- 507
Query: 171 TKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E + YPGG +PLGLA D E K+KE+KNG + +
Sbjct: 508 --NGGPLG-----EDSDALYPGG-AFDPLGLADDPETFAELKVKELKNGRLAM 552
>gi|224131818|ref|XP_002321186.1| light-harvesting complex II protein Lhcb2 [Populus trichocarpa]
gi|222861959|gb|EEE99501.1| light-harvesting complex II protein Lhcb2 [Populus trichocarpa]
Length = 265
Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 57/164 (34%), Positives = 84/164 (51%), Gaps = 14/164 (8%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR- 124
P YL G GD+G+D GL DPE+ + E++H+R+AM G G +F ++L G++
Sbjct: 66 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILAKNGVKF 125
Query: 125 ELPVWYEAGAVEFK-----FASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGL 179
VW++AG+ F + L Q +L +A M ++ EG G
Sbjct: 126 GESVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWASQVVLMGFV-------EGYRVGG 178
Query: 180 EAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
EGL+P YPGG +PLGLA D E K+KE+KNG + +
Sbjct: 179 GPLGEGLDPIYPGG-AFDPLGLADDPDAFAELKVKELKNGRLAM 221
>gi|223973225|gb|ACN30800.1| unknown [Zea mays]
Length = 196
Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 55/172 (31%), Positives = 86/172 (50%), Gaps = 27/172 (15%)
Query: 60 LPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLR 119
+PG P +LDG+ GDFGFDPLGL PE+ + ++E+ H R+AM V GIL + L
Sbjct: 1 MPGQPRPAHLDGSSPGDFGFDPLGLATVPENFERFKESEVYHCRWAMLAVPGILVPEALG 60
Query: 120 VTGIRELPVW--YEAGAVEF-----KFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTK 172
+ + W G + + + T+ +++ + + FAE +R M+ + K
Sbjct: 61 LGNWVKAQEWAAVPGGQATYLGAPVPWGTLPTILVIEFVAIAFAEHQRTMEK---DPEKK 117
Query: 173 EGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
+ YPGG +PLG +KD E+KLKEIKNG + ++
Sbjct: 118 K----------------YPGG-AFDPLGFSKDPAKFEEYKLKEIKNGRLAML 152
>gi|118489455|gb|ABK96530.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 265
Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 58/163 (35%), Positives = 83/163 (50%), Gaps = 14/163 (8%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR- 124
P YL G GD+G+D GL DPE+ + E++H+R+AM G G +F ++L G++
Sbjct: 66 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILAKNGVKF 125
Query: 125 ELPVWYEAGAVEFK-----FASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGL 179
VW++AGA F + L Q +L +A M ++ EG G
Sbjct: 126 GESVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWASQVVLMGFV-------EGYRVGG 178
Query: 180 EAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLIC 222
EGL+P YPGG +PLGLA D E K+KE+KNG +
Sbjct: 179 GPLGEGLDPIYPGG-AFDPLGLADDPDAFAELKVKELKNGRLA 220
>gi|357495319|ref|XP_003617948.1| Chlorophyll a/b binding protein [Medicago truncatula]
gi|355519283|gb|AET00907.1| Chlorophyll a/b binding protein [Medicago truncatula]
Length = 265
Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 59/173 (34%), Positives = 83/173 (47%), Gaps = 32/173 (18%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR- 124
P YL G GD+G+D GL DPE+ + E++H+R+AM G G F ++L G++
Sbjct: 66 PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCTFPEILEKNGVKF 125
Query: 125 ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPGSQ 170
VW++AGA F S ++ Q++LMGF E R
Sbjct: 126 GEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWATQVVLMGFVEGYR---------- 175
Query: 171 TKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G EGL+P YPGG +PLGLA D E K+KE+KNG + +
Sbjct: 176 ------VGGGPLGEGLDPLYPGG-AFDPLGLADDPDAFAELKVKELKNGRLAM 221
>gi|388514477|gb|AFK45300.1| unknown [Medicago truncatula]
Length = 265
Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 59/173 (34%), Positives = 83/173 (47%), Gaps = 32/173 (18%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR- 124
P YL G GD+G+D GL DPE+ + E++H+R+AM G G F ++L G++
Sbjct: 66 PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCTFPEILEKNGVKF 125
Query: 125 ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPGSQ 170
VW++AGA F S ++ Q++LMGF E R
Sbjct: 126 GEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWATQVVLMGFVEGYR---------- 175
Query: 171 TKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G EGL+P YPGG +PLGLA D E K+KE+KNG + +
Sbjct: 176 ------VGGGPLGEGLDPLYPGG-AFDPLGLADDPDAFAELKVKELKNGRLAM 221
>gi|187609486|gb|ACD13266.1| chlorophyll a/b binding protein precursor [Phyllostachys
iridescens]
Length = 205
Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 82/173 (47%), Gaps = 27/173 (15%)
Query: 59 WLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLL 118
W PG P +LDG+ GDFGFDPLGL PE+ + ++E+ H R+AM V G+L + L
Sbjct: 19 WFPGQPRPVHLDGSSPGDFGFDPLGLATVPENSERFKESEVYHCRWAMLCVPGVLVPEAL 78
Query: 119 RVTGIRELPVWYEAG-------AVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQT 171
+ + W V + + T+ ++ L + FAE +R M+ +
Sbjct: 79 GLGNWVKAQEWAAVPGGQATYFGVPVPWGNLPTILAIEFLAIAFAEHQRTMEKDPEKKK- 137
Query: 172 KEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
YPGG +PLG +KD E+KLKEI+NG + ++
Sbjct: 138 ------------------YPGG-AFDPLGFSKDPVKLEEYKLKEIRNGRLAML 171
>gi|449453598|ref|XP_004144543.1| PREDICTED: chlorophyll a-b binding protein 151, chloroplastic-like
[Cucumis sativus]
gi|449511798|ref|XP_004164056.1| PREDICTED: chlorophyll a-b binding protein 151, chloroplastic-like
[Cucumis sativus]
Length = 265
Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 59/173 (34%), Positives = 84/173 (48%), Gaps = 32/173 (18%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR- 124
P YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G++
Sbjct: 66 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLAKNGVKF 125
Query: 125 ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPGSQ 170
VW++AG+ F S ++ Q++LMGF E R
Sbjct: 126 GESVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYR---------- 175
Query: 171 TKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G EGL+P YPGG +PLGLA D E K+KE+KNG + +
Sbjct: 176 ------VGGGPLGEGLDPIYPGG-AFDPLGLADDPDAFAELKVKELKNGRLAM 221
>gi|20182|emb|CAA32109.1| chlorophyll a/b-binding preprotein (AA -28 to 235) [Oryza sativa]
Length = 263
Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 62/179 (34%), Positives = 88/179 (49%), Gaps = 32/179 (17%)
Query: 60 LPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLR 119
L G +PP YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL
Sbjct: 58 LSGREPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGGLGCVFPELLA 117
Query: 120 VTGIR-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDY 164
G++ VW++AG+ F S ++ VQ++LMG E R
Sbjct: 118 RNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIA-- 175
Query: 165 ISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E ++P YPGG +PLGLA D E K+KEIKNG + +
Sbjct: 176 ---------GGPLG-----EVVDPLYPGG-AFDPLGLADDPEAFAELKVKEIKNGRLAM 219
>gi|115453971|ref|NP_001050586.1| Os03g0592500 [Oryza sativa Japonica Group]
gi|122246902|sp|Q10HD0.1|CB23_ORYSJ RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCII type I CAB; Short=LHCP; Flags:
Precursor
gi|152013384|sp|A2XJ35.1|CB23_ORYSI RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCII type I CAB; Short=LHCP; Flags:
Precursor
gi|50839002|gb|AAT81763.1| chlorophyll a/b binding protein [Oryza sativa Japonica Group]
gi|108709618|gb|ABF97413.1| Chlorophyll a-b binding protein, chloroplast precursor, putative,
expressed [Oryza sativa Japonica Group]
gi|113549057|dbj|BAF12500.1| Os03g0592500 [Oryza sativa Japonica Group]
gi|125544706|gb|EAY90845.1| hypothetical protein OsI_12453 [Oryza sativa Indica Group]
gi|125586998|gb|EAZ27662.1| hypothetical protein OsJ_11611 [Oryza sativa Japonica Group]
gi|385718838|gb|AFI71846.1| chlorophyll a/b binbing protein [Oryza sativa]
Length = 263
Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 59/173 (34%), Positives = 84/173 (48%), Gaps = 32/173 (18%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR- 124
P YL G GD+G+D GL DPE+ + E++H+R+AM G G +F ++L G++
Sbjct: 64 PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNGVKF 123
Query: 125 ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPGSQ 170
VW++AGA F S ++ VQ++LMGF E R
Sbjct: 124 GEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYR---------- 173
Query: 171 TKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G EGL+ YPGG +PLGLA D E K+KE+KNG + +
Sbjct: 174 ------VGGGPLGEGLDKVYPGG-AFDPLGLADDPDTFAELKVKELKNGRLAM 219
>gi|307106008|gb|EFN54255.1| hypothetical protein CHLNCDRAFT_56227 [Chlorella variabilis]
Length = 248
Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 61/175 (34%), Positives = 85/175 (48%), Gaps = 33/175 (18%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRE 125
P YL G GD+G+D GL DPE+ Y + E++HAR+AM G G + +LL+ G+
Sbjct: 46 PSYLKGEYPGDYGWDTAGLSADPETFARYRELEVIHARWAMLGALGCVTPELLQNNGVAS 105
Query: 126 L--PVWYEAGAVEFK--------------FASTRTLFIVQLLLMGFAETKRYMDYISPGS 169
VW++AGA F+ S + + QL LMG E R ++ G
Sbjct: 106 FGEAVWFKAGAQIFQEGGLDYLGNPSLIHAQSIVAVLLTQLTLMGLIEGYR----VNGGP 161
Query: 170 QTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
A EGL+ YP G +PLGLA D E K+KE+KNG + +V
Sbjct: 162 ------------AGEGLDALYP-GEAFDPLGLADDPDTFSELKVKELKNGRLAMV 203
>gi|145078830|tpg|DAA05886.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm6 [Euglena gracilis]
Length = 825
Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 61/173 (35%), Positives = 82/173 (47%), Gaps = 32/173 (18%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR- 124
P YL G GD+G+D GL DP + Y +AEL+HAR+AM G G++F + L G+
Sbjct: 140 PSYLTGEFPGDYGWDTAGLAADPITFAKYREAELIHARWAMLGALGVVFPEALAKAGVPL 199
Query: 125 ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPGSQ 170
PVW++AGA F S + Q++LMG AE R
Sbjct: 200 AEPVWFKAGAQIFSEGGLDYLGNSNLVHAQSILAILAFQVVLMGLAEAYRV--------- 250
Query: 171 TKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E + YPGG +PLGLA D E K+KE+KNG + +
Sbjct: 251 --NGGPLG-----EDSDALYPGG-AFDPLGLADDPETFAELKVKELKNGRLAM 295
Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 61/173 (35%), Positives = 82/173 (47%), Gaps = 32/173 (18%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR- 124
P YL G GD+G+D GL DP + Y +AEL+HAR+AM G G++F + L G+
Sbjct: 380 PSYLTGEFPGDYGWDTAGLAADPITFAKYREAELIHARWAMLGALGVVFPEALAKAGVPL 439
Query: 125 ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPGSQ 170
PVW++AGA F S + Q++LMG AE R
Sbjct: 440 AEPVWFKAGAQIFSEGGLDYLGNSNLVHAQSILAILAFQVVLMGLAEAYRV--------- 490
Query: 171 TKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E + YPGG +PLGLA D E K+KE+KNG + +
Sbjct: 491 --NGGPLG-----EDSDALYPGG-AFDPLGLADDPETFAELKVKELKNGRLAM 535
Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 61/173 (35%), Positives = 82/173 (47%), Gaps = 32/173 (18%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR- 124
P YL G GD+G+D GL DP + Y +AEL+HAR+AM G G++F + L G+
Sbjct: 620 PSYLTGEFPGDYGWDTAGLAADPITFAKYREAELIHARWAMLGALGVVFPEALAKAGVPL 679
Query: 125 ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPGSQ 170
PVW++AGA F S + Q++LMG AE R
Sbjct: 680 AEPVWFKAGAQIFSEGGLDYLGNSNLVHAQSILAILAFQVVLMGLAEAYRV--------- 730
Query: 171 TKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E + YPGG +PLGLA D E K+KE+KNG + +
Sbjct: 731 --NGGPLG-----EDSDALYPGG-AFDPLGLADDPETFAELKVKELKNGRLAM 775
>gi|145079054|tpg|DAA05896.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm13 [Acetabularia acetabulum]
Length = 255
Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 73/227 (32%), Positives = 102/227 (44%), Gaps = 39/227 (17%)
Query: 15 SSSSFICNDVNKSSIGITSAFLPAKSGTTRRYLATVVRAQQRPTWLP--GVDPPPYLDGT 72
S+ +F+ V + +TS K G+ +V RP +L D P YL G
Sbjct: 5 SAKTFVGTQVASKKM-VTSMRRTQKKGSAPD---SVWYGPDRPQFLGPFSGDTPSYLTGE 60
Query: 73 LAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIREL--PVWY 130
GD+G+D GL DPE+ R Y + EL+HAR+AM G G + ++L G VW+
Sbjct: 61 FPGDYGWDTAGLSADPETFRRYRELELIHARWAMLGALGCVTPEILSKYGGVSFGESVWF 120
Query: 131 EAGAVEFK--------------FASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSF 176
+AG+ F+ S + Q++LMG E R G
Sbjct: 121 KAGSQIFQEGGLDYLGNANLVHAQSILAILGCQVVLMGAIEAYRV-----------NGGP 169
Query: 177 FGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G EGL+P YPG +PLGLA D E K+KEIKNG + +
Sbjct: 170 LG-----EGLDPLYPGDK-FDPLGLADDPDTFAELKIKEIKNGRLAM 210
>gi|225463428|ref|XP_002274942.1| PREDICTED: chlorophyll a-b binding protein 40, chloroplastic
isoform 1 [Vitis vinifera]
gi|359483839|ref|XP_003633024.1| PREDICTED: chlorophyll a-b binding protein 40, chloroplastic
isoform 2 [Vitis vinifera]
gi|147776663|emb|CAN67709.1| hypothetical protein VITISV_003096 [Vitis vinifera]
Length = 264
Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 61/175 (34%), Positives = 83/175 (47%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
DPP YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 63 DPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLSRNGV 122
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AGA F S ++ Q++LMG E R
Sbjct: 123 KFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVILMGAVEGYRI------- 175
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E +P YPGG +PLGLA D E K+KEIKNG + +
Sbjct: 176 ----AGGPLG-----EVTDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAM 220
>gi|87313235|gb|ABD37914.1| light-harvesting chlorophyll-a/b binding protein LhcbM9
[Chlamydomonas incerta]
Length = 254
Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 61/164 (37%), Positives = 82/164 (50%), Gaps = 14/164 (8%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR- 124
P YL G GD+G+D GL DPE+ + Y + EL+HAR+AM G G L +LL G +
Sbjct: 55 PAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCLTPELLAKNGTKF 114
Query: 125 ELPVWYEAGAVEFK-----FASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGL 179
VW++AGA F + +L Q ++ A M I EG
Sbjct: 115 GEAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATLACQVILMGLI-------EGYRVNG 167
Query: 180 EAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
A EGL+P YP G +PLGLA D E K+KE+KNG + +
Sbjct: 168 GPAGEGLDPLYP-GESFDPLGLADDPDTFAELKVKELKNGRLAM 210
>gi|115478691|ref|NP_001062939.1| Os09g0346500 [Oryza sativa Japonica Group]
gi|82654917|sp|P12330.2|CB21_ORYSJ RecName: Full=Chlorophyll a-b binding protein 1, chloroplastic;
AltName: Full=LHCII type I CAB-1; Short=LHCP; Flags:
Precursor
gi|50252362|dbj|BAD28469.1| putative chlorophyll a-b binding protein, chloroplast precursor
(LHCII type I CAB) (LHCP) [Oryza sativa Japonica Group]
gi|50252884|dbj|BAD29115.1| putative chlorophyll a-b binding protein, chloroplast precursor
(LHCII type I CAB) (LHCP) [Oryza sativa Japonica Group]
gi|113631172|dbj|BAF24853.1| Os09g0346500 [Oryza sativa Japonica Group]
gi|215737437|dbj|BAG96567.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737443|dbj|BAG96573.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737483|dbj|BAG96613.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215765877|dbj|BAG87574.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218201978|gb|EEC84405.1| hypothetical protein OsI_30987 [Oryza sativa Indica Group]
Length = 265
Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 60/175 (34%), Positives = 86/175 (49%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G+
Sbjct: 64 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGV 123
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ VQ++LMG E R
Sbjct: 124 KFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRI------- 176
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E ++P YPGG +PLGLA D E K+KEIKNG + +
Sbjct: 177 ----AGGPLG-----EVVDPLYPGG-AFDPLGLADDPEAFAELKVKEIKNGRLAM 221
>gi|1006704|emb|CAA89823.1| light-harvesting chlorophyll a/b binding protein of photosystem II
[Pseudotsuga menziesii]
Length = 234
Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 65/190 (34%), Positives = 91/190 (47%), Gaps = 16/190 (8%)
Query: 42 TTRRYLATVVRAQQRPTWLP--GVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAEL 99
T R ++ RP +L P YL G GD+G+D GL DPE+ + E+
Sbjct: 9 TVRSAPESIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEV 68
Query: 100 VHARFAMAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK-----FASTRTLFIVQLLLM 153
+H+R+AM G G +F +LL G++ VW++AGA F + L Q +L
Sbjct: 69 IHSRWAMLGALGCVFPELLAKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILA 128
Query: 154 GFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKL 213
+A M I EG G EGL+P YPGG +PLGLA D E K+
Sbjct: 129 IWAFQVVLMGLI-------EGYRVGGGPLGEGLDPLYPGG-AFDPLGLADDPEAFAELKV 180
Query: 214 KEIKNGLICL 223
KE+KNG + +
Sbjct: 181 KELKNGRLAM 190
>gi|297835814|ref|XP_002885789.1| Lhcb2 protein [Arabidopsis lyrata subsp. lyrata]
gi|297331629|gb|EFH62048.1| Lhcb2 protein [Arabidopsis lyrata subsp. lyrata]
Length = 265
Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 62/199 (31%), Positives = 93/199 (46%), Gaps = 34/199 (17%)
Query: 42 TTRRYLATVVRAQQRPTWLP--GVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAEL 99
T + ++ RP +L + P YL G GD+G+D GL DPE+ + E+
Sbjct: 40 TVKSTPQSIWYGPDRPKYLGPFSENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEV 99
Query: 100 VHARFAMAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEF--------------KFASTRT 144
+H+R+AM G G F ++L G++ VW++AG+ F S
Sbjct: 100 IHSRWAMLGALGCTFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILA 159
Query: 145 LFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKD 204
++ VQ++LMGF E R G EGL+P YPGG +PL LA+D
Sbjct: 160 IWAVQVVLMGFIEGYR----------------IGGGPLGEGLDPLYPGG-AFDPLNLAED 202
Query: 205 IRNAREWKLKEIKNGLICL 223
E K+KE+KNG + +
Sbjct: 203 PEAFSELKVKELKNGRLAM 221
>gi|217072028|gb|ACJ84374.1| unknown [Medicago truncatula]
Length = 265
Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 58/164 (35%), Positives = 83/164 (50%), Gaps = 14/164 (8%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR- 124
P YL G GD+G+D GL DPE+ + E++H+R+AM G G F ++L G++
Sbjct: 66 PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCTFPEILEKNGVKF 125
Query: 125 ELPVWYEAGAVEFK-----FASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGL 179
VW++AGA F + L Q +L +A M ++ EG G
Sbjct: 126 GEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWATRVVLMGFV-------EGYRVGG 178
Query: 180 EAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
EGL+P YPGG +PLGLA D E K+KE+KNG + +
Sbjct: 179 GPLGEGLDPLYPGG-AFDPLGLADDPDAFAELKVKELKNGRLAM 221
>gi|225461832|ref|XP_002285646.1| PREDICTED: chlorophyll a-b binding protein 40, chloroplastic [Vitis
vinifera]
gi|147833686|emb|CAN73057.1| hypothetical protein VITISV_007597 [Vitis vinifera]
Length = 267
Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 59/166 (35%), Positives = 83/166 (50%), Gaps = 14/166 (8%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 66 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 125
Query: 124 R-ELPVWYEAGAVEFK-----FASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFF 177
+ VW++AGA F + L Q +L +A M + EG
Sbjct: 126 KFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWASQVILMGAV-------EGYRI 178
Query: 178 GLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G E ++P YPGG +PLGLA D E K+KEIKNG + +
Sbjct: 179 GGGPLGEVVDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAM 223
>gi|4741944|gb|AAD28769.1|AF134122_1 Lhcb2 protein [Arabidopsis thaliana]
Length = 265
Score = 84.0 bits (206), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 62/199 (31%), Positives = 93/199 (46%), Gaps = 34/199 (17%)
Query: 42 TTRRYLATVVRAQQRPTWLP--GVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAEL 99
T + ++ RP +L + P YL G GD+G+D GL DPE+ + E+
Sbjct: 40 TVKSTPQSIWYGPDRPKYLGPFSENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEV 99
Query: 100 VHARFAMAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEF--------------KFASTRT 144
+H+R+AM G G F ++L G++ VW++AG+ F S
Sbjct: 100 IHSRWAMLGALGCTFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILA 159
Query: 145 LFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKD 204
++ VQ++LMGF E R G EGL+P YPGG +PL LA+D
Sbjct: 160 IWAVQVVLMGFIEGYR----------------IGGGPLGEGLDPLYPGG-AFDPLNLAED 202
Query: 205 IRNAREWKLKEIKNGLICL 223
E K+KE+KNG + +
Sbjct: 203 PEAFSELKVKELKNGRLAM 221
>gi|15224471|ref|NP_178585.1| photosystem II light harvesting complex protein 2.1 [Arabidopsis
thaliana]
gi|4874296|gb|AAD31358.1| putative chlorophyll a/b binding protein [Arabidopsis thaliana]
gi|15450349|gb|AAK96468.1| At2g05100/F15L11.2 [Arabidopsis thaliana]
gi|15450494|gb|AAK96540.1| At2g05100/F15L11.2 [Arabidopsis thaliana]
gi|25054901|gb|AAN71932.1| putative chlorophyll a/b binding protein [Arabidopsis thaliana]
gi|330250800|gb|AEC05894.1| photosystem II light harvesting complex protein 2.1 [Arabidopsis
thaliana]
Length = 265
Score = 84.0 bits (206), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 62/199 (31%), Positives = 93/199 (46%), Gaps = 34/199 (17%)
Query: 42 TTRRYLATVVRAQQRPTWLP--GVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAEL 99
T + ++ RP +L + P YL G GD+G+D GL DPE+ + E+
Sbjct: 40 TVKSTPQSIWYGPDRPKYLGPFSENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEV 99
Query: 100 VHARFAMAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEF--------------KFASTRT 144
+H+R+AM G G F ++L G++ VW++AG+ F S
Sbjct: 100 IHSRWAMLGALGCTFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILA 159
Query: 145 LFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKD 204
++ VQ++LMGF E R G EGL+P YPGG +PL LA+D
Sbjct: 160 IWAVQVVLMGFIEGYR----------------IGGGPLGEGLDPLYPGG-AFDPLNLAED 202
Query: 205 IRNAREWKLKEIKNGLICL 223
E K+KE+KNG + +
Sbjct: 203 PEAFSELKVKELKNGRLAM 221
>gi|255539358|ref|XP_002510744.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223551445|gb|EEF52931.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 329
Score = 84.0 bits (206), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 67/212 (31%), Positives = 97/212 (45%), Gaps = 48/212 (22%)
Query: 42 TTRRYLATVVRAQQRPTWLPGV--DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAEL 99
T + ++ ++RP WL + D P YL G L GD+GFD GL +D + + Y E+
Sbjct: 98 TAKARKESLWYGEERPRWLGPIPYDYPAYLTGELPGDYGFDVAGLSKDSVAFQRYFNFEI 157
Query: 100 VHARFAMAGVAGILFTDLLRVTGIREL--PVWYEAGAVEFK-------------FASTRT 144
+HAR+AM G L ++L ++G PVW+ G + K FA ++
Sbjct: 158 LHARWAMLAALGALAPEVLDLSGAFHFIEPVWWRVGYSKLKGDTLDYLGIPGLHFAGSQG 217
Query: 145 LFIV---QLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEP---------GYPG 192
+ ++ Q LLM E RY +E LEP YPG
Sbjct: 218 VLVIAICQALLMVGPEYARY-------------------CGIEALEPLGIYLPGDINYPG 258
Query: 193 GPLLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
GPL +PL L+ D E K+KEIKNG + +V
Sbjct: 259 GPLFDPLNLSSDAVALEELKVKEIKNGRLAMV 290
>gi|116779839|gb|ABK21446.1| unknown [Picea sitchensis]
Length = 266
Score = 84.0 bits (206), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 68/205 (33%), Positives = 98/205 (47%), Gaps = 17/205 (8%)
Query: 27 SSIGITSAFLPAKSGTTRRYLATVVRAQQRPTWLP--GVDPPPYLDGTLAGDFGFDPLGL 84
S +G + A + + T R ++ RP +L P YL G GD+ +D GL
Sbjct: 27 SKVGASQARITMRR-TVRSAPESIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYRWDTAGL 85
Query: 85 GEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK----- 138
DPE+ + E++H+R+AM G G +F +LL TG++ VW++AGA F
Sbjct: 86 SADPETFAKNRELEVIHSRWAMLGALGCVFPELLAKTGVKFGEAVWFKAGAQIFSEGGLD 145
Query: 139 FASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNP 198
+ L Q +L +A M I EG G EGL+P YPGG +P
Sbjct: 146 YLGNPNLIHAQSILAIWAFQVVLMGLI-------EGYRVGGGPLGEGLDPLYPGG-AFDP 197
Query: 199 LGLAKDIRNAREWKLKEIKNGLICL 223
LGLA D E K+KE+KNG + +
Sbjct: 198 LGLADDPEAFAELKVKELKNGRLAM 222
>gi|4741948|gb|AAD28771.1|AF134124_1 Lhcb2 protein [Arabidopsis thaliana]
Length = 265
Score = 84.0 bits (206), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 62/199 (31%), Positives = 93/199 (46%), Gaps = 34/199 (17%)
Query: 42 TTRRYLATVVRAQQRPTWLP--GVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAEL 99
T + ++ RP +L + P YL G GD+G+D GL DPE+ + E+
Sbjct: 40 TVKSTPQSIWYGPDRPKYLGPFSENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEV 99
Query: 100 VHARFAMAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEF--------------KFASTRT 144
+H+R+AM G G F ++L G++ VW++AG+ F S
Sbjct: 100 IHSRWAMLGALGCTFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILA 159
Query: 145 LFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKD 204
++ VQ++LMGF E R G EGL+P YPGG +PL LA+D
Sbjct: 160 IWAVQVVLMGFIEGYR----------------IGGGPLGEGLDPLYPGG-AFDPLNLAED 202
Query: 205 IRNAREWKLKEIKNGLICL 223
E K+KE+KNG + +
Sbjct: 203 PEAFSELKVKELKNGRLAM 221
>gi|15224465|ref|NP_178582.1| photosystem II light harvesting complex protein 2.2 [Arabidopsis
thaliana]
gi|4741946|gb|AAD28770.1|AF134123_1 Lhcb2 protein [Arabidopsis thaliana]
gi|4585935|gb|AAD25595.1| putative chlorophyll a/b binding protein [Arabidopsis thaliana]
gi|15809901|gb|AAL06878.1| At2g05070/F1O13.20 [Arabidopsis thaliana]
gi|17064974|gb|AAL32641.1| putative chlorophyll a/b binding protein [Arabidopsis thaliana]
gi|17978863|gb|AAL47403.1| At2g05070/F1O13.20 [Arabidopsis thaliana]
gi|20260048|gb|AAM13371.1| putative chlorophyll a/b binding protein [Arabidopsis thaliana]
gi|330250799|gb|AEC05893.1| photosystem II light harvesting complex protein 2.2 [Arabidopsis
thaliana]
Length = 265
Score = 84.0 bits (206), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 62/199 (31%), Positives = 93/199 (46%), Gaps = 34/199 (17%)
Query: 42 TTRRYLATVVRAQQRPTWLP--GVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAEL 99
T + ++ RP +L + P YL G GD+G+D GL DPE+ + E+
Sbjct: 40 TVKSTPQSIWYGPDRPKYLGPFSENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEV 99
Query: 100 VHARFAMAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEF--------------KFASTRT 144
+H+R+AM G G F ++L G++ VW++AG+ F S
Sbjct: 100 IHSRWAMLGALGCTFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILA 159
Query: 145 LFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKD 204
++ VQ++LMGF E R G EGL+P YPGG +PL LA+D
Sbjct: 160 IWAVQVVLMGFIEGYR----------------IGGGPLGEGLDPLYPGG-AFDPLNLAED 202
Query: 205 IRNAREWKLKEIKNGLICL 223
E K+KE+KNG + +
Sbjct: 203 PEAFSELKVKELKNGRLAM 221
>gi|225463432|ref|XP_002275075.1| PREDICTED: chlorophyll a-b binding protein 40, chloroplastic [Vitis
vinifera]
Length = 264
Score = 84.0 bits (206), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 61/175 (34%), Positives = 83/175 (47%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
DPP YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 63 DPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLSRNGV 122
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AGA F S ++ Q++LMG E R
Sbjct: 123 KFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVILMGAVEGYRI------- 175
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E +P YPGG +PLGLA D E K+KEIKNG + +
Sbjct: 176 ----AGGPLG-----EVTDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAM 220
>gi|145079233|tpg|DAA05905.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm12 [Acetabularia acetabulum]
Length = 255
Score = 84.0 bits (206), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 62/176 (35%), Positives = 83/176 (47%), Gaps = 33/176 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
D P YL G GD+G+D GL DPE+ R Y + EL+HAR+AM G G + ++L G
Sbjct: 52 DCPSYLTGEFPGDYGWDTAGLSADPETFRRYREQELIHARWAMLGALGCVTPEILSKYGG 111
Query: 124 REL--PVWYEAGAVEFK--------------FASTRTLFIVQLLLMGFAETKRYMDYISP 167
VW++AG+ F+ S + Q++LMG E R
Sbjct: 112 VSFGESVWFKAGSQIFQEGGLDYLGNANLVHAQSILAILGCQVVLMGAIEAYRV------ 165
Query: 168 GSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G EGL+P YPG +PLGLA D E K+KEIKNG + +
Sbjct: 166 -----NGGPLG-----EGLDPLYPGDK-FDPLGLADDPDTFAELKIKEIKNGRLAM 210
>gi|87621681|gb|ABD38707.1| chloroplast chlorophyll a/b binding protein [Pachysandra
terminalis]
Length = 267
Score = 84.0 bits (206), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 61/175 (34%), Positives = 84/175 (48%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 66 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 125
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AGA F S ++ Q+LLMG E R
Sbjct: 126 KFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWATQVLLMGAVEGYRIA------ 179
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E ++P YPGG +PLGLA D E K+KEIKNG + +
Sbjct: 180 -----GGPLG-----EVIDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAM 223
>gi|307103850|gb|EFN52107.1| hypothetical protein CHLNCDRAFT_32733 [Chlorella variabilis]
Length = 255
Score = 83.6 bits (205), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 61/175 (34%), Positives = 88/175 (50%), Gaps = 30/175 (17%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLL-RVTGIR 124
P YL G GD+G+D GL DPE+ + + E++HAR+AM G G +F ++L + +G+
Sbjct: 54 PAYLTGEFPGDYGWDTSGLSADPETFKRFRTVEVIHARWAMLGALGCIFPEVLEKYSGVE 113
Query: 125 -ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPGS 169
VW++AGA F S +VQ+LLMG E R +
Sbjct: 114 FGEAVWFKAGAQIFADGGLNYLGNPGLVHAQSIVATLVVQVLLMGAVEIYR--------A 165
Query: 170 QTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
+ S FG EG + YPGG +PLGLA D E K+KE+KNG + ++
Sbjct: 166 NGEGPSGFG-----EGQDNLYPGGA-FDPLGLADDPDTLAELKVKELKNGRLAMM 214
>gi|326510279|dbj|BAJ87356.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 219
Score = 83.6 bits (205), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 60/164 (36%), Positives = 84/164 (51%), Gaps = 14/164 (8%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR- 124
P YL G GD+G+D GL DPE+ + E++H+R+AM G G +F ++L GI+
Sbjct: 20 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGIKF 79
Query: 125 ELPVWYEAGAVEFK-----FASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGL 179
VW++AGA F + L Q +L +A M +I EG G
Sbjct: 80 GEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMGFI-------EGYRVGG 132
Query: 180 EAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
EGL+ YPGG +PLGLA D A E K+KE+KNG + +
Sbjct: 133 GPLGEGLDIIYPGG-AFDPLGLADDPDTAAELKVKELKNGRLAM 175
>gi|511153|emb|CAA84525.1| chlorophyll a,b binding protein type I [Solanum tuberosum]
Length = 265
Score = 83.6 bits (205), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 61/190 (32%), Positives = 91/190 (47%), Gaps = 16/190 (8%)
Query: 42 TTRRYLATVVRAQQRPTWLP--GVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAEL 99
T + ++ + RP +L P YL G GD+G+D GL DPE+ ++ E+
Sbjct: 40 TVKSAPQSIWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNLELEV 99
Query: 100 VHARFAMAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK-----FASTRTLFIVQLLLM 153
+H R+AM G G +F ++L G+ VW++AG+ F + L Q +L
Sbjct: 100 IHCRWAMLGALGCVFPEILSKNGVTFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILA 159
Query: 154 GFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKL 213
+A M ++ EG G EGL+ YPGG +PLGLA D E K+
Sbjct: 160 IWASQVVLMGFV-------EGYRVGGGPLGEGLDKIYPGGA-FDPLGLADDPEAFAELKV 211
Query: 214 KEIKNGLICL 223
KEIKNG + +
Sbjct: 212 KEIKNGRLAM 221
>gi|145351847|ref|XP_001420273.1| chlorophyll a/b binding, possibly photosystem II light harvesting
complex [Ostreococcus lucimarinus CCE9901]
gi|144580507|gb|ABO98566.1| chlorophyll a/b binding, possibly photosystem II light harvesting
complex [Ostreococcus lucimarinus CCE9901]
Length = 365
Score = 83.6 bits (205), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 59/180 (32%), Positives = 89/180 (49%), Gaps = 35/180 (19%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRE 125
P +LDG+L GD GFDPLGLG+D L + EL+HAR+AM G+ G+ +LL G+ +
Sbjct: 174 PAHLDGSLCGDAGFDPLGLGKD--DLPRMRELELLHARWAMLGIVGVAVPELLERYGVAD 231
Query: 126 L--PVWYEAGAVE--------------FKFASTRTLFIV---QLLLMGFAETKRY--MDY 164
L PVW++ GA + F A + I+ Q++LMG E RY +D
Sbjct: 232 LGEPVWWKVGAAKMNSDVSLDYFGLQGFHIAGGSGIAIIAACQVVLMGGPEYARYVGIDS 291
Query: 165 ISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
+ P G + YPGG +P ++ D + K+ EIK+G + ++
Sbjct: 292 LEPVGVYLPG------------DKDYPGGAPFDPFKISDDADEFEKQKVMEIKHGRLAMI 339
>gi|297306780|dbj|BAJ08392.1| light harvesting chlorophyll a/b-binding protein Lhcb1 [Hordeum
vulgare subsp. vulgare]
Length = 266
Score = 83.6 bits (205), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 60/175 (34%), Positives = 84/175 (48%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
DPP YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 65 DPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 124
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 125 KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRV------- 177
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E ++P YPGG +PLGLA D E K+KEIKNG + +
Sbjct: 178 ----AGGPLG-----EIVDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAM 222
>gi|326520097|dbj|BAK03973.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 83.6 bits (205), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 60/175 (34%), Positives = 85/175 (48%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
DPP YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 65 DPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 124
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 125 KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRV------- 177
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E ++P YPGG +PLGLA+D E K+KEIKNG + +
Sbjct: 178 ----AGGPLG-----EIVDPLYPGGS-FDPLGLAEDPEAFAELKVKEIKNGRLAM 222
>gi|357121229|ref|XP_003562323.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
[Brachypodium distachyon]
Length = 263
Score = 83.6 bits (205), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 58/164 (35%), Positives = 84/164 (51%), Gaps = 14/164 (8%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR- 124
P YL G GD+G+D GL DPE+ + E++H+R+AM G G +F ++L G++
Sbjct: 64 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKF 123
Query: 125 ELPVWYEAGAVEFK-----FASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGL 179
VW++AG+ F + L Q +L +A M +I EG G
Sbjct: 124 GEAVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMGFI-------EGYRVGG 176
Query: 180 EAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
EGL+ YPGG +PLGLA D A E K+KE+KNG + +
Sbjct: 177 GPLGEGLDKIYPGG-AFDPLGLADDPDTAAELKVKELKNGRLAM 219
>gi|147857734|emb|CAN78667.1| hypothetical protein VITISV_031287 [Vitis vinifera]
Length = 264
Score = 83.6 bits (205), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 61/175 (34%), Positives = 83/175 (47%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
DPP YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 63 DPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLSRNGV 122
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AGA F S ++ Q++LMG E R
Sbjct: 123 KFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVILMGAVEGYRI------- 175
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E +P YPGG +PLGLA D E K+KEIKNG + +
Sbjct: 176 ----AGGPLG-----EVTDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAM 220
>gi|163914163|dbj|BAF95850.1| putative chloroplast chlorophyll a/b binding protein [Vitis hybrid
cultivar]
Length = 234
Score = 83.6 bits (205), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 59/166 (35%), Positives = 83/166 (50%), Gaps = 14/166 (8%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 64 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 123
Query: 124 R-ELPVWYEAGAVEFK-----FASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFF 177
+ VW++AGA F + L Q +L +A M + EG
Sbjct: 124 KFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWASQVILMGAV-------EGYRI 176
Query: 178 GLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G E ++P YPGG +PLGLA D E K+KEIKNG + +
Sbjct: 177 GGGPLGEVVDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAM 221
>gi|357148841|ref|XP_003574911.1| PREDICTED: uncharacterized protein LOC100846020 [Brachypodium
distachyon]
Length = 560
Score = 83.6 bits (205), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 60/175 (34%), Positives = 85/175 (48%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
DPP YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 59 DPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 118
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 119 KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVA------ 172
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E ++P YPGG +PLGLA+D E K+KEIKNG + +
Sbjct: 173 -----GGPLG-----EIVDPLYPGGS-FDPLGLAEDPEAFAELKVKEIKNGRLAM 216
>gi|108709619|gb|ABF97414.1| Chlorophyll a-b binding protein, chloroplast precursor, putative,
expressed [Oryza sativa Japonica Group]
Length = 219
Score = 83.6 bits (205), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 59/173 (34%), Positives = 84/173 (48%), Gaps = 32/173 (18%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR- 124
P YL G GD+G+D GL DPE+ + E++H+R+AM G G +F ++L G++
Sbjct: 20 PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNGVKF 79
Query: 125 ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPGSQ 170
VW++AGA F S ++ VQ++LMGF E R
Sbjct: 80 GEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYR---------- 129
Query: 171 TKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G EGL+ YPGG +PLGLA D E K+KE+KNG + +
Sbjct: 130 ------VGGGPLGEGLDKVYPGG-AFDPLGLADDPDTFAELKVKELKNGRLAM 175
>gi|31753114|gb|AAH53854.1| Unknown (protein for IMAGE:5194336), partial [Homo sapiens]
gi|111494016|gb|AAI11385.1| Unknown (protein for IMAGE:5198300), partial [Homo sapiens]
Length = 287
Score = 83.6 bits (205), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 60/175 (34%), Positives = 84/175 (48%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
DPP YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 86 DPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 145
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 146 KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVA------ 199
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E ++P YPGG +PLGLA D E K+KEIKNG + +
Sbjct: 200 -----GGPLG-----EIVDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAM 243
>gi|115438250|ref|NP_001043493.1| Os01g0600900 [Oryza sativa Japonica Group]
gi|82654918|sp|P12331.2|CB22_ORYSJ RecName: Full=Chlorophyll a-b binding protein 2, chloroplastic;
AltName: Full=LHCII type I CAB-2; Short=LHCP; Flags:
Precursor
gi|53793541|dbj|BAD52990.1| putative a/b-binding protein precursor [Oryza sativa Japonica
Group]
gi|113533024|dbj|BAF05407.1| Os01g0600900 [Oryza sativa Japonica Group]
gi|125526713|gb|EAY74827.1| hypothetical protein OsI_02717 [Oryza sativa Indica Group]
gi|125605334|gb|EAZ44370.1| hypothetical protein OsJ_28992 [Oryza sativa Japonica Group]
gi|215767332|dbj|BAG99560.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215768322|dbj|BAH00551.1| unnamed protein product [Oryza sativa Japonica Group]
gi|385718790|gb|AFI71822.1| chlorophyll a/b-binding protein [Oryza sativa]
Length = 261
Score = 83.6 bits (205), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 60/175 (34%), Positives = 86/175 (49%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G+
Sbjct: 60 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGV 119
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ VQ++LMG E R
Sbjct: 120 KFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIA------ 173
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E ++P YPGG +PLGLA D E K+KEIKNG + +
Sbjct: 174 -----GGPLG-----EVVDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAM 217
>gi|302566696|gb|ADL41158.1| chloroplast light-harvesting chlorophyll a/b binding protein
[Triticum aestivum]
Length = 266
Score = 83.6 bits (205), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 60/175 (34%), Positives = 84/175 (48%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
DPP YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 65 DPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 124
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 125 KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVA------ 178
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E ++P YPGG +PLGLA D E K+KEIKNG + +
Sbjct: 179 -----GGPLG-----EIVDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAM 222
>gi|297829418|ref|XP_002882591.1| LHCB4.2 [Arabidopsis lyrata subsp. lyrata]
gi|297328431|gb|EFH58850.1| LHCB4.2 [Arabidopsis lyrata subsp. lyrata]
Length = 287
Score = 83.6 bits (205), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 69/258 (26%), Positives = 105/258 (40%), Gaps = 80/258 (31%)
Query: 20 ICNDVNKSSIGITSAFLPAKSGTTRRYLATVVRAQQRPTWLPGVDPPPYLDGTLAGDFGF 79
+ +D++ S T+ F + TV+ RP W PG P YLDG+L GD+GF
Sbjct: 18 VVSDISSGSTRFTAWFGFGTKKAAPKKAKTVI--SDRPLWFPGAKSPEYLDGSLVGDYGF 75
Query: 80 DPLGLGE--------------------------------DPES-----------LRWYVQ 96
DP GLG+ DP+S L+ + +
Sbjct: 76 DPFGLGKPAEYLQFDLDSLDQNLAKNLAGDVIGTRTEAVDPKSTPFQPYSEVFGLQRFRE 135
Query: 97 AELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFAST----------RTLF 146
EL+H R+AM G + + L TG+ W +AG VE S+ TL
Sbjct: 136 CELIHGRWAMLATLGAITVEWL--TGV----TWQDAGKVELVDGSSYLGQPLPFSISTLI 189
Query: 147 IVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIR 206
+++L++G+ E +R A L+ + YPGG +PLGLA D
Sbjct: 190 WIEVLVVGYIEFQR-------------------NAELDSEKRLYPGGKFFDPLGLASDPE 230
Query: 207 NAREWKLKEIKNGLICLV 224
+ +L EIK+ + +V
Sbjct: 231 KKAQLQLAEIKHARLAMV 248
Score = 37.0 bits (84), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 19/34 (55%)
Query: 79 FDPLGLGEDPESLRWYVQAELVHARFAMAGVAGI 112
FDPLGL DPE AE+ HAR AM G G
Sbjct: 220 FDPLGLASDPEKKAQLQLAEIKHARLAMVGFLGF 253
>gi|407970998|ref|NP_001234739.1| chlorophyll a-b binding protein 4, chloroplastic [Solanum
lycopersicum]
gi|115803|sp|P14278.1|CB24_SOLLC RecName: Full=Chlorophyll a-b binding protein 4, chloroplastic;
AltName: Full=LHCII type I CAB-4; Short=LHCP; Flags:
Precursor
gi|170390|gb|AAA34141.1| chlorophyll a/b-binding protein precursor [Solanum lycopersicum]
Length = 265
Score = 83.2 bits (204), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 62/199 (31%), Positives = 91/199 (45%), Gaps = 34/199 (17%)
Query: 42 TTRRYLATVVRAQQRPTWLP--GVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAEL 99
T + ++ + RP +L P YL G GD+G+D GL DPE+ + E+
Sbjct: 40 TVKSAPQSIWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEV 99
Query: 100 VHARFAMAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEF--------------KFASTRT 144
+H R+AM G G +F ++L G++ VW++AG+ F S
Sbjct: 100 IHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLVHAQSILA 159
Query: 145 LFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKD 204
++ Q++LMGF E R G EGL+ YPGG +PLGLA D
Sbjct: 160 IWACQVVLMGFVEGYR----------------VGGGPLGEGLDKIYPGGA-FDPLGLADD 202
Query: 205 IRNAREWKLKEIKNGLICL 223
E K+KEIKNG + +
Sbjct: 203 PEAFAELKVKEIKNGRLAM 221
>gi|303288722|ref|XP_003063649.1| chlorophyll a/b-binding protein CP26, chloroplast precursor
[Micromonas pusilla CCMP1545]
gi|226454717|gb|EEH52022.1| chlorophyll a/b-binding protein CP26, chloroplast precursor
[Micromonas pusilla CCMP1545]
Length = 306
Score = 83.2 bits (204), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 63/173 (36%), Positives = 87/173 (50%), Gaps = 17/173 (9%)
Query: 61 PGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRV 120
P D P Y+DGTLAGD+GFDPL LG D + Y AE++HAR+AM + GI+ + L +
Sbjct: 98 PATDVPSYMDGTLAGDYGFDPLKLGAD-GKINDYRAAEVIHARWAMLAIPGIVIPEALGI 156
Query: 121 TGIRELPVWYEAGAVEFKFASTRTLFI--------VQLLLMGFAETKRYMDYISP-GSQT 171
G VW E G V + R + +Q+ L E R P G
Sbjct: 157 PG----GVWTETGKVFLDGEAGRPEILQNPIIFAGIQIALFAAVEGYRSGKVAPPEGFVP 212
Query: 172 KEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
+G F G + A GL+P PGGP L+ +A + K+KEIKNG + ++
Sbjct: 213 GKGKFSGSDFA--GLDPINPGGP-LDFFNVASTPEDLAILKVKEIKNGRLAMI 262
>gi|379069812|gb|AFC91647.1| chloroplast chlorophyll A/B binding protein [Hevea brasiliensis]
Length = 265
Score = 83.2 bits (204), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 61/175 (34%), Positives = 84/175 (48%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 64 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 123
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AGA F S ++ VQ++LMG E R
Sbjct: 124 KFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRI------- 176
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E +P YPGG +PLGLA D E K+KEIKNG + +
Sbjct: 177 ----AGGPLG-----EVTDPIYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAM 221
>gi|125605083|gb|EAZ44119.1| hypothetical protein OsJ_28744 [Oryza sativa Japonica Group]
Length = 245
Score = 83.2 bits (204), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 59/186 (31%), Positives = 85/186 (45%), Gaps = 46/186 (24%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRE 125
P +L G GD+GFD GLG DP + Y E++H R+AM G++ +LL + G+
Sbjct: 42 PAHLTGEYPGDYGFDIAGLGRDPVAFANYFNFEILHCRWAMLAALGVVVPELLDLFGVVH 101
Query: 126 L--PVWYEAGAVE-------------FKFASTRTLFIV---QLLLMGFAETKRYMDYISP 167
PVW++ G + F+ A + + ++ Q LLM E RY
Sbjct: 102 FVEPVWWKVGYAKLQGDTLDYLGIPGFRIAGGQGVIVIAICQALLMVGPEYARY------ 155
Query: 168 GSQTKEGSFFGLEAALEGLEP---------GYPGGPLLNPLGLAKDIRNAREWKLKEIKN 218
+E LEP YPGG L +PLGL+KD + K+KEIKN
Sbjct: 156 -------------CGIEALEPLGLYLPGDINYPGGALFDPLGLSKDPVAFEDLKVKEIKN 202
Query: 219 GLICLV 224
G + +V
Sbjct: 203 GRLAMV 208
>gi|168018669|ref|XP_001761868.1| predicted protein [Physcomitrella patens subsp. patens]
gi|168018837|ref|XP_001761952.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162686923|gb|EDQ73309.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162687007|gb|EDQ73393.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 267
Score = 83.2 bits (204), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 61/175 (34%), Positives = 85/175 (48%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+ P YL+G AGD+G+D GL DPE+ + E++HAR+AM G G L +LL +G+
Sbjct: 66 ETPSYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCLTPELLAKSGV 125
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AGA F S ++ Q++LMG E R
Sbjct: 126 KFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVA------ 179
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E +P YPGG +PLGLA D E K+KEIKNG + +
Sbjct: 180 -----GGPLG-----EVTDPIYPGGS-FDPLGLADDPDTFAELKVKEIKNGRLAM 223
>gi|359754899|gb|AEV59639.1| chloroplast photosystem II light harvesting complex protein type I,
partial [Oxytropis arctobia]
Length = 239
Score = 83.2 bits (204), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 60/175 (34%), Positives = 86/175 (49%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G+
Sbjct: 38 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGV 97
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AGA F S ++ VQ++LMG E R
Sbjct: 98 KFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWAVQVILMGAVEGYRIA------ 151
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E ++P YPGG +PLGLA D E K+KE+KNG + +
Sbjct: 152 -----GGPLG-----EVVDPLYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAM 195
>gi|21593520|gb|AAM65487.1| chlorophyll a/b-binding protein-like [Arabidopsis thaliana]
Length = 280
Score = 83.2 bits (204), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 56/161 (34%), Positives = 85/161 (52%), Gaps = 12/161 (7%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRE 125
P YL+G +AGD+G+DP GLG+ PE+ Y EL+HAR+AM G AG + + L G
Sbjct: 82 PEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHARWAMLGAAGFIIPEALNKYGANC 141
Query: 126 LP--VWYEAGAVEFKFASTRTL-FIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAA 182
P VW++ GA+ TL + + + + + GS+ ++ +
Sbjct: 142 GPEAVWFKTGAL---LLDGNTLNYFGKNIPINLVLAVVAEVVLLGGSE-----YYRITNG 193
Query: 183 LEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
L+ + +PGGP +PLGLAKD K+KEIKNG + +
Sbjct: 194 LDFEDKLHPGGP-FDPLGLAKDPEQGALLKVKEIKNGRLAM 233
>gi|384250359|gb|EIE23838.1| hypothetical protein COCSUDRAFT_28488 [Coccomyxa subellipsoidea
C-169]
Length = 275
Score = 83.2 bits (204), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 64/184 (34%), Positives = 88/184 (47%), Gaps = 35/184 (19%)
Query: 55 QRPTWLPG-VDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGIL 113
RP +L P YL+G GD+G+D GL DPE+ Y + E++HAR+AM G GI+
Sbjct: 70 DRPGYLGAFTRSPSYLNGEFPGDYGWDTAGLSADPETFSRYREIEVIHARWAMLGALGIV 129
Query: 114 FTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFI--------------VQLLLMGFAETK 159
+LL T W++AGA F + L + VQ++LMG E
Sbjct: 130 VPELLDQT---NHVAWFDAGATIFGPKGIQYLGVPGLINAKNIIATVAVQVILMGAIEGY 186
Query: 160 RYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNG 219
R ++ G A EGL+ YP G +PLGLA D E K+KEIKNG
Sbjct: 187 R----VNGGP------------AGEGLDKVYP-GESFDPLGLADDPDTFAELKVKEIKNG 229
Query: 220 LICL 223
+ +
Sbjct: 230 RLAM 233
>gi|115827|sp|P14273.1|CB2_CHLRE RecName: Full=Chlorophyll a-b binding protein of LHCII type I,
chloroplastic; Short=CAB; Short=LHCP; Flags: Precursor
gi|20269802|gb|AAM18056.1|AF495472_1 major light-harvesting complex II protein m6 [Chlamydomonas
reinhardtii]
gi|167409|gb|AAA33082.1| chlorophyll a/b-binding protein [Chlamydomonas reinhardtii]
Length = 253
Score = 83.2 bits (204), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 63/172 (36%), Positives = 83/172 (48%), Gaps = 32/172 (18%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR- 124
P YL G GD+G+D GL DPE+ + Y + EL+HAR+AM G G +LL +G +
Sbjct: 54 PAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCQTPELLAKSGTKF 113
Query: 125 ELPVWYEAGAVEFKFASTRTL--------------FIVQLLLMGFAETKRYMDYISPGSQ 170
VW++AGA F L VQ++LMG E R ++ G
Sbjct: 114 GEAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATSAVQVILMGLIEGYR----VNGGP- 168
Query: 171 TKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLIC 222
A EGL+P YP G +PLGLA D E K+KEIKNG +
Sbjct: 169 -----------AGEGLDPLYP-GESFDPLGLADDPDTFAELKVKEIKNGRLA 208
>gi|115832|sp|P20866.1|CB2_PHYPA RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCII type I CAB; Short=LHCP; Flags:
Precursor
gi|169020|gb|AAA33636.1| major chlorophyll binding protein [Physcomitrella patens]
Length = 269
Score = 83.2 bits (204), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 68/221 (30%), Positives = 104/221 (47%), Gaps = 35/221 (15%)
Query: 21 CNDVNKSSIGITSAFLPAKSGTTRRYLA-TVVRAQQRPTWLP--GVDPPPYLDGTLAGDF 77
N++++ +G A + + ++ + T+ RP +L + P YL+G AGD+
Sbjct: 21 VNELSRKVLGNVEARVTMRRTVSKSAGSDTIWYGADRPKFLGPFSGETPSYLNGEFAGDY 80
Query: 78 GFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR-ELPVWYEAGAVE 136
G+D GL DPE+ + E++HAR+AM G G L +LL +G++ VW++AGA
Sbjct: 81 GWDTAGLSSDPETFARNRELEVIHARWAMLGALGCLTPELLAKSGVKFGEAVWFKAGAQI 140
Query: 137 F--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAA 182
F S ++ Q++LMG E R G G
Sbjct: 141 FSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVA-----------GGPLG---- 185
Query: 183 LEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
E +P YPGG +PLGLA D E K+KEIKNG + +
Sbjct: 186 -EVTDPIYPGGS-FDPLGLADDPDTFAELKVKEIKNGRLAM 224
>gi|359754911|gb|AEV59645.1| chloroplast photosystem II light harvesting complex protein type I,
partial [Oxytropis lambertii]
Length = 237
Score = 83.2 bits (204), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 60/175 (34%), Positives = 86/175 (49%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G+
Sbjct: 36 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGV 95
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AGA F S ++ VQ++LMG E R
Sbjct: 96 KFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWAVQVILMGAVEGYRIA------ 149
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E ++P YPGG +PLGLA D E K+KE+KNG + +
Sbjct: 150 -----GGPLG-----EVVDPLYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAM 193
>gi|359754901|gb|AEV59640.1| chloroplast photosystem II light harvesting complex protein type I,
partial [Oxytropis campestris subsp. johannensis]
gi|359754909|gb|AEV59644.1| chloroplast photosystem II light harvesting complex protein type I,
partial [Oxytropis splendens]
Length = 239
Score = 83.2 bits (204), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 60/175 (34%), Positives = 86/175 (49%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G+
Sbjct: 38 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGV 97
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AGA F S ++ VQ++LMG E R
Sbjct: 98 KFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWAVQVILMGAVEGYRIA------ 151
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E ++P YPGG +PLGLA D E K+KE+KNG + +
Sbjct: 152 -----GGPLG-----EVVDPLYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAM 195
>gi|359754905|gb|AEV59642.1| chloroplast photosystem II light harvesting complex protein type I,
partial [Oxytropis maydelliana]
Length = 238
Score = 83.2 bits (204), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 60/175 (34%), Positives = 86/175 (49%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G+
Sbjct: 38 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGV 97
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AGA F S ++ VQ++LMG E R
Sbjct: 98 KFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWAVQVILMGAVEGYRIA------ 151
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E ++P YPGG +PLGLA D E K+KE+KNG + +
Sbjct: 152 -----GGPLG-----EVVDPLYPGGS-FDPLGLADDPEAFAEXKVKELKNGRLAM 195
>gi|359754903|gb|AEV59641.1| chloroplast photosystem II light harvesting complex protein type I,
partial [Oxytropis maydelliana]
Length = 235
Score = 83.2 bits (204), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 60/175 (34%), Positives = 86/175 (49%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G+
Sbjct: 38 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGV 97
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AGA F S ++ VQ++LMG E R
Sbjct: 98 KFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWAVQVILMGAVEGYRIA------ 151
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E ++P YPGG +PLGLA D E K+KE+KNG + +
Sbjct: 152 -----GGPLG-----EVVDPLYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAM 195
>gi|167997305|ref|XP_001751359.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162697340|gb|EDQ83676.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 267
Score = 83.2 bits (204), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 61/175 (34%), Positives = 85/175 (48%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+ P YL+G AGD+G+D GL DPE+ + E++HAR+AM G G L +LL +G+
Sbjct: 66 ETPSYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCLTPELLAKSGV 125
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AGA F S ++ Q++LMG E R
Sbjct: 126 KFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVA------ 179
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E +P YPGG +PLGLA D E K+KEIKNG + +
Sbjct: 180 -----GGPLG-----EVTDPIYPGGS-FDPLGLADDPDTFAELKVKEIKNGRLAM 223
>gi|297815030|ref|XP_002875398.1| LHCB2:4 [Arabidopsis lyrata subsp. lyrata]
gi|297321236|gb|EFH51657.1| LHCB2:4 [Arabidopsis lyrata subsp. lyrata]
Length = 266
Score = 83.2 bits (204), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 61/190 (32%), Positives = 93/190 (48%), Gaps = 16/190 (8%)
Query: 42 TTRRYLATVVRAQQRPTWLP--GVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAEL 99
T + ++ RP +L + P YL G GD+G+D GL DPE+ + E+
Sbjct: 41 TVKSTPQSIWYGPDRPKYLGPFSENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEV 100
Query: 100 VHARFAMAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK-----FASTRTLFIVQLLLM 153
+H+R+AM G G F ++L G++ VW++AG+ F + + L Q +L
Sbjct: 101 IHSRWAMLGALGCTFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGSPNLIHAQSILA 160
Query: 154 GFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKL 213
+A M +I EG G EGL+P YPGG +PL LA+D E K+
Sbjct: 161 IWACQVVLMGFI-------EGYRIGGGPLGEGLDPLYPGG-AFDPLNLAEDPEAFSELKV 212
Query: 214 KEIKNGLICL 223
KE+KNG + +
Sbjct: 213 KELKNGRLAM 222
>gi|90288037|gb|ABD92879.1| chloroplast chlorophyll a/b binding protein [Pachysandra
terminalis]
Length = 264
Score = 83.2 bits (204), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 59/164 (35%), Positives = 82/164 (50%), Gaps = 14/164 (8%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR- 124
P YL G GD+G+D GL DPE+ + E++H R+AM G G +F ++L G++
Sbjct: 65 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEILSKNGVKF 124
Query: 125 ELPVWYEAGAVEFK-----FASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGL 179
VW++AGA F + L Q +L +A M +I EG G
Sbjct: 125 GEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFI-------EGYRVGG 177
Query: 180 EAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
EGL+ YPGG +PLGLA D E K+KEIKNG + +
Sbjct: 178 GPLGEGLDSIYPGGA-FDPLGLADDPEAFAELKVKEIKNGRLAM 220
>gi|359754907|gb|AEV59643.1| chloroplast photosystem II light harvesting complex protein type I,
partial [Oxytropis splendens]
Length = 236
Score = 83.2 bits (204), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 60/175 (34%), Positives = 86/175 (49%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G+
Sbjct: 36 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGV 95
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AGA F S ++ VQ++LMG E R
Sbjct: 96 KFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWAVQVILMGAVEGYRIA------ 149
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E ++P YPGG +PLGLA D E K+KE+KNG + +
Sbjct: 150 -----GGPLG-----EVVDPLYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAM 193
>gi|1661160|gb|AAB18404.1| chlorophyll a/b binding protein [Oryza sativa Indica Group]
Length = 265
Score = 83.2 bits (204), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 57/167 (34%), Positives = 87/167 (52%), Gaps = 14/167 (8%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G +GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 64 EPPSYLTGEFSGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 123
Query: 124 R-ELPVWYEAGAVEFK-----FASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFF 177
+ VW++AG+ F + +L Q +L + +M + G + G
Sbjct: 124 KFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWGCQVVFMGAVE-GYRVAGGPLG 182
Query: 178 GLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
E ++P YPGG L+PLGLA D E K+KEIKNG + ++
Sbjct: 183 ------EVVDPLYPGGS-LDPLGLADDPEAFAELKVKEIKNGRLAML 222
>gi|388515841|gb|AFK45982.1| unknown [Lotus japonicus]
Length = 265
Score = 82.8 bits (203), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 59/164 (35%), Positives = 82/164 (50%), Gaps = 14/164 (8%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR- 124
P YL G GD+G+D GL DPE+ + E++H+R+AM G G F ++L G++
Sbjct: 66 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCTFPEILERNGVKF 125
Query: 125 ELPVWYEAGAVEFK-----FASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGL 179
VW++AGA F + L Q +L +A M I EG G
Sbjct: 126 GEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWATQVVLMGLI-------EGYRVGG 178
Query: 180 EAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
EGL+P YPGG +PLGLA D E K+KE+KNG + +
Sbjct: 179 GPLGEGLDPLYPGG-AFDPLGLADDPDAFAELKVKELKNGRLAM 221
>gi|359754897|gb|AEV59638.1| chloroplast photosystem II light harvesting complex protein type I,
partial [Oxytropis arctobia]
Length = 212
Score = 82.8 bits (203), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 60/175 (34%), Positives = 86/175 (49%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G+
Sbjct: 38 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGV 97
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AGA F S ++ VQ++LMG E R
Sbjct: 98 KFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWAVQVILMGAVEGYRIA------ 151
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E ++P YPGG +PLGLA D E K+KE+KNG + +
Sbjct: 152 -----GGPLG-----EVVDPLYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAM 195
>gi|116789194|gb|ABK25154.1| unknown [Picea sitchensis]
Length = 240
Score = 82.8 bits (203), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 63/185 (34%), Positives = 88/185 (47%), Gaps = 32/185 (17%)
Query: 42 TTRRYLATVVRAQQRPTWLP--GVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAEL 99
T R ++ RP +L P YL G GD+G+D GL DPE+ + E+
Sbjct: 41 TVRSAPESIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEV 100
Query: 100 VHARFAMAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAET 158
+H R+AM G G +F +LL TG++ VW++A ++ Q++LMG E
Sbjct: 101 IHCRWAMLGALGCVFPELLAKTGVKFGEAVWFKA------------IWASQVVLMGLIEG 148
Query: 159 KRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKN 218
R G G EGL+P YPGG +PLGLA D E K+KEIKN
Sbjct: 149 YRV-----------GGGPLG-----EGLDPLYPGG-AFDPLGLADDPEAFAELKVKEIKN 191
Query: 219 GLICL 223
G + +
Sbjct: 192 GRLAM 196
>gi|115802|sp|P27494.1|CB23_TOBAC RecName: Full=Chlorophyll a-b binding protein 36, chloroplastic;
AltName: Full=LHCII type I CAB-36; Short=LHCP; Flags:
Precursor
gi|19827|emb|CAA41188.1| chlorophyll a/b binding protein [Nicotiana tabacum]
Length = 265
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 62/190 (32%), Positives = 90/190 (47%), Gaps = 16/190 (8%)
Query: 42 TTRRYLATVVRAQQRPTWLP--GVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAEL 99
T + ++ + RP +L P YL G GD+G+D GL DPE+ + E+
Sbjct: 40 TVKSAPQSIWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEV 99
Query: 100 VHARFAMAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK-----FASTRTLFIVQLLLM 153
+H R+AM G G +F ++L G++ VW++AG+ F + L Q +L
Sbjct: 100 IHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILA 159
Query: 154 GFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKL 213
+A M I EG G EGL+ YPGG +PLGLA D E K+
Sbjct: 160 VWASQVVLMGLI-------EGYRVGGGPLGEGLDKIYPGGA-FDPLGLADDPEAFAELKV 211
Query: 214 KEIKNGLICL 223
KEIKNG + +
Sbjct: 212 KEIKNGRLAM 221
>gi|115820|sp|P15194.1|CB2B_PINSY RecName: Full=Chlorophyll a-b binding protein type 2 member 1B,
chloroplastic; AltName: Full=Chlorophyll a-b binding
protein type II 1B; Short=CAB; AltName: Full=LHCP;
Flags: Precursor
gi|20665|emb|CAA32658.1| unnamed protein product [Pinus sylvestris]
Length = 274
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 60/175 (34%), Positives = 84/175 (48%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 73 EPPSYLTGEFPGDYGWDTAGLSADPENFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 132
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AGA F S ++ Q++LMG E R
Sbjct: 133 KFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIA------ 186
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E +P YPGG +PLGLA+D E K+KEIKNG + +
Sbjct: 187 -----GGPLG-----EVTDPIYPGGS-FDPLGLAEDPEAFAELKVKEIKNGRLAM 230
>gi|225446831|ref|XP_002283566.1| PREDICTED: chlorophyll a-b binding protein 40, chloroplastic [Vitis
vinifera]
gi|147799091|emb|CAN74831.1| hypothetical protein VITISV_023674 [Vitis vinifera]
Length = 270
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 60/175 (34%), Positives = 83/175 (47%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 69 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLSRNGV 128
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AGA F S ++ Q++LMG E R
Sbjct: 129 KFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWATQVILMGAVEGYRIA------ 182
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E +P YPGG +PLGLA D E K+KEIKNG + +
Sbjct: 183 -----GGPLG-----EVTDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAM 226
>gi|116779436|gb|ABK21281.1| unknown [Picea sitchensis]
gi|116780920|gb|ABK21880.1| unknown [Picea sitchensis]
gi|116785937|gb|ABK23915.1| unknown [Picea sitchensis]
gi|116792210|gb|ABK26276.1| unknown [Picea sitchensis]
gi|224284045|gb|ACN39760.1| unknown [Picea sitchensis]
gi|224285097|gb|ACN40276.1| unknown [Picea sitchensis]
Length = 288
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 67/221 (30%), Positives = 95/221 (42%), Gaps = 77/221 (34%)
Query: 56 RPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYV-------------------- 95
RP WLPG P +LDG+L GD+GFDPLGLG+ E L++ V
Sbjct: 66 RPLWLPGAKAPEWLDGSLVGDYGFDPLGLGKPSEYLQYDVDSLDQNLDLNLPGDLLGDFV 125
Query: 96 ----------------------QAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAG 133
+ EL+H R+AM GV G L + TGI W +AG
Sbjct: 126 GDPDIKPSIQPYSEVFGLQRFRECELIHGRWAMLGVLGALAVE--GFTGI----YWQDAG 179
Query: 134 AVE-------FKFA---STRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAAL 183
VE F F+ + TL ++++LL+G+ E +R + + P ++
Sbjct: 180 KVELVEGSSYFGFSLPFNMSTLILIEVLLLGYIEFQRNAE-VDPETRL------------ 226
Query: 184 EGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
YPGG +P GLA D KL EIK+ + +V
Sbjct: 227 ------YPGGKYFDPFGLAVDEIKKDRLKLAEIKHARLAMV 261
>gi|1657859|gb|AAB18209.1| chlorophyll a/b-binding protein WCAB precursor [Triticum aestivum]
Length = 266
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 85/175 (48%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 65 EPPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHCRWAMLGALGCVFPELLARNGV 124
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 125 KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVA------ 178
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E ++P YPGG +PLGLA+D E K+KEIKNG + +
Sbjct: 179 -----GGPLG-----EIVDPLYPGGS-FDPLGLAEDPEAFAELKVKEIKNGRLAM 222
>gi|302796621|ref|XP_002980072.1| light-harvesting complex [Selaginella moellendorffii]
gi|302811558|ref|XP_002987468.1| light-harvesting complex [Selaginella moellendorffii]
gi|300144874|gb|EFJ11555.1| light-harvesting complex [Selaginella moellendorffii]
gi|300152299|gb|EFJ18942.1| light-harvesting complex [Selaginella moellendorffii]
Length = 271
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 63/188 (33%), Positives = 93/188 (49%), Gaps = 38/188 (20%)
Query: 54 QQRPTWLP-GV----DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAG 108
+ R +LP G+ D P YL G + GD+GFDP GL + P Y EL+HAR+AM G
Sbjct: 61 ESRRIYLPEGILDRSDVPEYLTGEVPGDYGFDPFGLSKKPADFDKYQAYELIHARWAMLG 120
Query: 109 VAGILFTDLLRVTGIRELP--VWYEAGAVEFK------FASTRTLFIV-----QLLLMGF 155
AG + + G + P VW++ GA+ F + + +V +++L+G
Sbjct: 121 AAGFVIPEAFNKFGAQCGPEAVWFKTGALLLDGGTLNYFGANIPINLVLAVLAEVILVGG 180
Query: 156 AETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKE 215
AE R ++ + GL+ +PGGP +PLGLAKD N K+KE
Sbjct: 181 AEYYRSINNL-------------------GLDRLHPGGP-FDPLGLAKDPDNFALLKVKE 220
Query: 216 IKNGLICL 223
IKNG + +
Sbjct: 221 IKNGRLAM 228
>gi|218172|dbj|BAA00536.1| type I light-harvesting chlorophyll a/b-binding protein [Oryza
sativa Japonica Group]
gi|227611|prf||1707316A chlorophyll a/b binding protein 1
Length = 265
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 60/175 (34%), Positives = 85/175 (48%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + EL+H+R+AM G G +F +LL G+
Sbjct: 64 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELELIHSRWAMLGALGCVFPELLARNGV 123
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ VQ++LMG E R
Sbjct: 124 KFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRI------- 176
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E ++P YPGG +PLGLA D E K+KEIK G + +
Sbjct: 177 ----AGGPLG-----EVVDPLYPGG-AFDPLGLADDPEAFAELKVKEIKKGRLAM 221
>gi|29123378|gb|AAO62942.1| chlorophyll a/b binding protein [Nicotiana tabacum]
Length = 265
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 71/223 (31%), Positives = 102/223 (45%), Gaps = 22/223 (9%)
Query: 15 SSSSFICNDVNKSSIGITSAFLPAKSG--TTRRYLATVVRA----QQRPTWLP--GVDPP 66
S+F+ V KS + G T RR + + ++ + RP +L P
Sbjct: 7 QQSAFVGQTVAKSQNELVRKIGSFGGGRATMRRTVKSAPQSIWYGEDRPKYLGPFSEQTP 66
Query: 67 PYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR-E 125
YL G GD+G+D GL DPE+ + E++H R+AM G G +F ++L G++
Sbjct: 67 SYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVKFG 126
Query: 126 LPVWYEAGAVEFK-----FASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLE 180
VW++AGA F + L Q +L +A M I EG G
Sbjct: 127 EAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMGLI-------EGYRVGGG 179
Query: 181 AALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
EGL+ YPGG +PLGLA D E K+KEIKNG + +
Sbjct: 180 PLGEGLDKIYPGGA-FDPLGLADDPEAFAELKVKEIKNGRLAM 221
>gi|297815028|ref|XP_002875397.1| LHCB2:4 [Arabidopsis lyrata subsp. lyrata]
gi|297321235|gb|EFH51656.1| LHCB2:4 [Arabidopsis lyrata subsp. lyrata]
Length = 266
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 61/190 (32%), Positives = 92/190 (48%), Gaps = 16/190 (8%)
Query: 42 TTRRYLATVVRAQQRPTWLP--GVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAEL 99
T + ++ RP +L + P YL G GD+G+D GL DPE+ + E+
Sbjct: 41 TVKSTPQSIWYGPDRPKYLGPFSENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEV 100
Query: 100 VHARFAMAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK-----FASTRTLFIVQLLLM 153
+H+R+AM G G F ++L G++ VW++AG+ F + L Q +L
Sbjct: 101 IHSRWAMLGALGCTFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILA 160
Query: 154 GFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKL 213
+A M +I EG G EGL+P YPGG +PL LA+D E K+
Sbjct: 161 IWACQVVLMGFI-------EGYRIGGGPLGEGLDPLYPGG-AFDPLNLAEDPEAFSELKV 212
Query: 214 KEIKNGLICL 223
KE+KNG + +
Sbjct: 213 KELKNGRLAM 222
>gi|168053612|ref|XP_001779229.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669328|gb|EDQ55917.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 266
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 64/178 (35%), Positives = 85/178 (47%), Gaps = 36/178 (20%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLL----R 119
+ P YL G GD+G+D GL DPES EL+H R+AM G G + +LL R
Sbjct: 63 NTPSYLKGEFPGDYGWDTAGLSADPESFARNRALELIHGRWAMLGALGCITPELLQKYSR 122
Query: 120 VTGIRELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYI 165
VT ++E PVW++AGA F S ++ VQ++LMG E R
Sbjct: 123 VT-LKE-PVWFKAGAQIFSDGGLDYLGNPNLIHAQSILAVWAVQVVLMGAVEAYRTN--- 177
Query: 166 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
GL EG + YPGG +PLGLA D E K+KE+KNG + +
Sbjct: 178 ------------GLPGVGEGGDL-YPGGKYFDPLGLADDPETLAELKVKELKNGRLAM 222
>gi|225447576|ref|XP_002271687.1| PREDICTED: chlorophyll a-b binding protein 151, chloroplastic
[Vitis vinifera]
gi|147794485|emb|CAN71610.1| hypothetical protein VITISV_000630 [Vitis vinifera]
Length = 265
Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 59/173 (34%), Positives = 82/173 (47%), Gaps = 32/173 (18%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR- 124
P YL G GD+G+D GL DPE+ + E++H R+AM G G +F ++L G++
Sbjct: 66 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEILSKNGVKF 125
Query: 125 ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPGSQ 170
VW++AGA F S ++ Q++LMGF E R
Sbjct: 126 GEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMGFVEGYR---------- 175
Query: 171 TKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G EGL+ YPGG +PLGLA D E K+KEIKNG + +
Sbjct: 176 ------VGGGPLGEGLDAIYPGG-AFDPLGLADDPDAFAELKVKEIKNGRLAM 221
>gi|168045248|ref|XP_001775090.1| predicted protein [Physcomitrella patens subsp. patens]
gi|168045296|ref|XP_001775114.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162673541|gb|EDQ60062.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162673565|gb|EDQ60086.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 263
Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 61/175 (34%), Positives = 85/175 (48%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+ P YL+G AGD+G+D GL DPE+ + E++HAR+AM G G L +LL +G+
Sbjct: 62 ETPSYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCLTPELLAKSGV 121
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AGA F S ++ Q++LMG E R
Sbjct: 122 KFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVA------ 175
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E +P YPGG +PLGLA D E K+KEIKNG + +
Sbjct: 176 -----GGPLG-----EVTDPIYPGGS-FDPLGLADDPDTFAELKVKEIKNGRLAM 219
>gi|145079253|tpg|DAA05906.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm8 [Acetabularia acetabulum]
Length = 220
Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 69/219 (31%), Positives = 100/219 (45%), Gaps = 39/219 (17%)
Query: 26 KSSIGITSAFLPAKSGTTRRYLATVVR--AQQRPTWLPGV---DPPPYLDGTLAGDFGFD 80
++++ + SA L A++ + R V R WL D P YL G GD+G+D
Sbjct: 2 QTAVVVNSAVL-AQTKSIRNVSRNAVEWYGPDRAKWLGPFSEGDVPSYLTGEFPGDYGWD 60
Query: 81 PLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIREL--PVWYEAGAVEFK 138
GL DPE+ + Y + EL+HAR+AM G G + ++L G VW++AG+ F+
Sbjct: 61 TAGLSADPETFKAYREQELIHARWAMLGALGCVTPEILSKYGGVSFGESVWFKAGSQIFQ 120
Query: 139 --------------FASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALE 184
S + Q++LMG E R G G E
Sbjct: 121 EGGLDYLGNSNLIHAQSILAILGCQVVLMGLIEAYRV-----------NGGPLG-----E 164
Query: 185 GLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
GL+P +PG +PLGLA D E K+KEIKNG + +
Sbjct: 165 GLDPLHPGDK-FDPLGLADDPDTFAELKVKEIKNGRLAM 202
>gi|15232249|ref|NP_189406.1| photosystem II light harvesting complex protein 2.3 [Arabidopsis
thaliana]
gi|4741950|gb|AAD28772.1|AF134125_1 Lhcb2 protein [Arabidopsis thaliana]
gi|13899125|gb|AAK48984.1|AF370557_1 light harvesting chlorophyll a/b-binding protein [Arabidopsis
thaliana]
gi|9294474|dbj|BAB02693.1| light harvesting chlorophyll a/b-binding protein [Arabidopsis
thaliana]
gi|30023746|gb|AAP13406.1| At3g27700 [Arabidopsis thaliana]
gi|332643831|gb|AEE77352.1| photosystem II light harvesting complex protein 2.3 [Arabidopsis
thaliana]
Length = 266
Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 61/190 (32%), Positives = 92/190 (48%), Gaps = 16/190 (8%)
Query: 42 TTRRYLATVVRAQQRPTWLP--GVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAEL 99
T + ++ RP +L + P YL G GD+G+D GL DPE+ + E+
Sbjct: 41 TVKSTPQSIWYGPDRPKYLGPFSENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEV 100
Query: 100 VHARFAMAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK-----FASTRTLFIVQLLLM 153
+H+R+AM G G F ++L G++ VW++AG+ F + L Q +L
Sbjct: 101 IHSRWAMLGALGCTFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILA 160
Query: 154 GFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKL 213
+A M +I EG G EGL+P YPGG +PL LA+D E K+
Sbjct: 161 IWACQVVLMGFI-------EGYRIGGGPLGEGLDPLYPGG-AFDPLNLAEDPEAFSELKV 212
Query: 214 KEIKNGLICL 223
KE+KNG + +
Sbjct: 213 KELKNGRLAM 222
>gi|77157635|dbj|BAE46383.1| chlorophyll a/b binding protein [Panax ginseng]
Length = 265
Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 62/190 (32%), Positives = 91/190 (47%), Gaps = 16/190 (8%)
Query: 42 TTRRYLATVVRAQQRPTWLP--GVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAEL 99
T R ++ RP +L P YL G GD+G+D GL DPE+ + E+
Sbjct: 40 TVRSAPESIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEV 99
Query: 100 VHARFAMAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK-----FASTRTLFIVQLLLM 153
+H+R+AM G G +F ++L G++ VW++AGA F + L Q +L
Sbjct: 100 IHSRWAMLGALGCVFPEILARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILA 159
Query: 154 GFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKL 213
+A M ++ EG G EGL+ YPGG +PLGLA D E K+
Sbjct: 160 IWASQVVLMGFV-------EGYRVGGGPLGEGLDKIYPGGS-FDPLGLADDPEAFAELKV 211
Query: 214 KEIKNGLICL 223
KE+KNG + +
Sbjct: 212 KELKNGRLAM 221
>gi|209868191|gb|ACI90635.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus yunnanensis]
Length = 254
Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 60/175 (34%), Positives = 84/175 (48%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G+
Sbjct: 75 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGV 134
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AGA F S ++ Q++LMG E R
Sbjct: 135 KFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIA------ 188
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E +P YPGG +PLGLA D E K+KEIKNG + +
Sbjct: 189 -----GGPLG-----EVTDPIYPGGS-FDPLGLADDPDAFAELKVKEIKNGRLAM 232
>gi|359480215|ref|XP_002273106.2| PREDICTED: chlorophyll a-b binding protein 1B, chloroplastic-like
[Vitis vinifera]
Length = 263
Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 83/175 (47%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 62 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLSRNGV 121
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AGA F S ++ Q++LMG E R
Sbjct: 122 KFGEAVWFKAGAQIFSEGGLDYLGNPGLVHAQSILAIWACQVILMGAVEGYR-------- 173
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G E ++P YPGG +PLGLA D E K+KEIKNG + +
Sbjct: 174 --------IGGGPLGEVIDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAM 219
>gi|312281813|dbj|BAJ33772.1| unnamed protein product [Thellungiella halophila]
Length = 266
Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 61/190 (32%), Positives = 91/190 (47%), Gaps = 16/190 (8%)
Query: 42 TTRRYLATVVRAQQRPTWLP--GVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAEL 99
T + ++ RP +L + P YL G GD+G+D GL DPE+ + E+
Sbjct: 41 TVKSTPQSIWYGPDRPKYLGPFSENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEV 100
Query: 100 VHARFAMAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK-----FASTRTLFIVQLLLM 153
+H+R+AM G G F ++L G++ VW++AG+ F + L Q +L
Sbjct: 101 IHSRWAMLGALGCTFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILA 160
Query: 154 GFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKL 213
+A M I EG G EGL+P YPGG +PL LA+D E K+
Sbjct: 161 IWASQVVLMGLI-------EGYRIGGGPLGEGLDPLYPGG-AFDPLNLAEDPEAFSELKV 212
Query: 214 KEIKNGLICL 223
KE+KNG + +
Sbjct: 213 KELKNGRLAM 222
>gi|122831060|gb|ABM66819.1| chloroplast light-harvesting chlorophyll a/b binding protein
[Bambusa oldhamii]
Length = 265
Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 86/175 (49%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G AGD+G+D GL DPE+ + E++H+R+AM G G +F +LL G+
Sbjct: 64 EPPSYLTGEFAGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGV 123
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 124 KFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRI------- 176
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E ++P YPGG +PLGLA D E K+KE+KNG + +
Sbjct: 177 ----AGGPLG-----EVVDPLYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAM 221
>gi|225457685|ref|XP_002276647.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic [Vitis vinifera]
gi|297745621|emb|CBI40786.3| unnamed protein product [Vitis vinifera]
Length = 331
Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 69/200 (34%), Positives = 94/200 (47%), Gaps = 48/200 (24%)
Query: 54 QQRPTWLPGV--DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAG 111
++RP WL + D P YL G L GD+GFD GLG+DP + + Y E++HAR+AM G
Sbjct: 112 EERPRWLGPIPYDYPAYLTGELPGDYGFDIAGLGKDPVAFQKYFNFEILHARWAMLAALG 171
Query: 112 ILFTDLLRVTGIREL--PVWYEAGAVE-------------FKFASTRTLFIV---QLLLM 153
L +LL + G PVW+ G + F FA ++ + ++ Q LLM
Sbjct: 172 ALLPELLDLLGAFHFVEPVWWRVGYSKLKGDTLDYLGIPGFHFAGSQGVIVIAICQALLM 231
Query: 154 GFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEP---------GYPGGPLLNPLGLAKD 204
E RY +E LEP YPGG L +PL L+KD
Sbjct: 232 VGPEYARY-------------------CGIEALEPLGIYLPGDINYPGGALFDPLNLSKD 272
Query: 205 IRNAREWKLKEIKNGLICLV 224
E K+KEIKNG + +V
Sbjct: 273 PVAFEELKVKEIKNGRLAMV 292
>gi|14041685|emb|CAC38830.1| chlorophyll a/b binding protein [Pinus contorta]
Length = 274
Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 60/175 (34%), Positives = 84/175 (48%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G+
Sbjct: 73 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGV 132
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AGA F S ++ Q++LMG E R
Sbjct: 133 KFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIA------ 186
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E +P YPGG +PLGLA D E K+KEIKNG + +
Sbjct: 187 -----GGPLG-----EVTDPIYPGGS-FDPLGLADDPDAFAELKVKEIKNGRLAM 230
>gi|162461210|ref|NP_001105698.1| light harvesting chlorophyll a/b binding protein5 precursor [Zea
mays]
gi|733454|gb|AAA64414.1| chlorophyll a/b-binding apoprotein CP26 precursor [Zea mays]
gi|414591311|tpg|DAA41882.1| TPA: chlorophyll a/b-binding apoprotein CP26 Precursor [Zea mays]
Length = 283
Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 60/172 (34%), Positives = 85/172 (49%), Gaps = 34/172 (19%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRE 125
P YL G + GD+G+DP GLG+ PE Y EL+HAR+AM G AG + + G
Sbjct: 85 PEYLTGEVPGDYGYDPFGLGKKPEDFAKYQAYELIHARWAMLGAAGAVIPEACNKFGANC 144
Query: 126 LP--VWYEAGAVEFKFASTRTLF------------IVQLLLMGFAETKRYMDYISPGSQT 171
P VW++ GA+ +T + F I +++L+G AE R ++ +
Sbjct: 145 GPEAVWFKTGALLLD-GNTLSYFGNSIPINLVVAVIAEVVLVGGAEYYRIINGLD----- 198
Query: 172 KEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
LE L +PGGP +PLGLA D A K+KEIKNG + +
Sbjct: 199 -------LEDKL------HPGGP-FDPLGLASDPDQAAILKVKEIKNGRLAM 236
>gi|297809249|ref|XP_002872508.1| hypothetical protein ARALYDRAFT_489877 [Arabidopsis lyrata subsp.
lyrata]
gi|297318345|gb|EFH48767.1| hypothetical protein ARALYDRAFT_489877 [Arabidopsis lyrata subsp.
lyrata]
Length = 280
Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 54/160 (33%), Positives = 83/160 (51%), Gaps = 10/160 (6%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRE 125
P YL+G +AGD+G+DP GLG+ PE+ Y EL+HAR+AM G AG + + L G
Sbjct: 82 PEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHARWAMLGAAGFIIPEALNKYGANC 141
Query: 126 LP--VWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAAL 183
P VW++ GA+ +T F + + + ++ ++ + L
Sbjct: 142 GPEAVWFKTGALLLD-GNTLNYFGKNIPI------NLVLAVVAEVVLLGGAEYYRITNGL 194
Query: 184 EGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
+ + +PGGP +PLGLAKD K+KEIKNG + +
Sbjct: 195 DFEDKLHPGGP-FDPLGLAKDPEQGALLKVKEIKNGRLAM 233
>gi|1644289|emb|CAA65042.1| chlorophyll a/b-binding protein CP26 in PS II [Brassica juncea]
Length = 283
Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 58/172 (33%), Positives = 86/172 (50%), Gaps = 34/172 (19%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRE 125
P YL+G +AGD+G+DP GLG+ PE+ Y EL+HAR+AM G AG + + L G
Sbjct: 85 PEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHARWAMLGAAGCIIPEALNKYGANC 144
Query: 126 LP--VWYEAGAVEFKFASTRTLF------------IVQLLLMGFAETKRYMDYISPGSQT 171
P VW++ GA+ +T + F + +++L+G AE R +
Sbjct: 145 GPEAVWFKTGALLLD-GNTLSYFGKNIPINLVLAVVGEVVLLGGAEYYRITN-------- 195
Query: 172 KEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
L+ + +PGGP +PL LAKD K+KEIKNG + +
Sbjct: 196 ----------GLDFEDKLHPGGP-FDPLDLAKDPEQGALLKVKEIKNGRLAM 236
>gi|326511319|dbj|BAJ87673.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 70/216 (32%), Positives = 98/216 (45%), Gaps = 46/216 (21%)
Query: 37 PAKSGTTRRYL-ATVVRAQQRPTWLP--GVD-----------PPPYLDGTLAGDFGFDPL 82
PA G R + T V+A+Q + P G D PP YL G GD+G+D
Sbjct: 24 PAHIGEARVTMRKTAVKAKQVSSGSPWYGSDRVLYLGPLSGEPPSYLTGEFPGDYGWDTA 83
Query: 83 GLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEF---- 137
GL DPE+ + E++H R+AM G G +F +LL G++ VW++AG+ F
Sbjct: 84 GLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGG 143
Query: 138 ----------KFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLE 187
S ++ Q++LMG E R G G E ++
Sbjct: 144 LDYLGNPNLVHAQSILAIWACQVVLMGAVEGYRIA-----------GGPLG-----EIVD 187
Query: 188 PGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
P YPGG +PLGLA D E K+KEIKNG + +
Sbjct: 188 PLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAM 222
>gi|296081542|emb|CBI20065.3| unnamed protein product [Vitis vinifera]
Length = 198
Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/70 (55%), Positives = 49/70 (70%), Gaps = 6/70 (8%)
Query: 50 VVRAQQRPTWLPGVDP------PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHAR 103
VV A + +WLPGV P +LDG+L GD+GFDPLGLG+DP L+WY +AEL+H R
Sbjct: 47 VVAAAPKKSWLPGVKAGGNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGR 106
Query: 104 FAMAGVAGIL 113
+AMA V GI
Sbjct: 107 WAMAAVVGIF 116
>gi|73665920|gb|AAZ79657.1| putative chlorophyll a/b-binding protein [Fagus sylvatica]
Length = 260
Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 60/175 (34%), Positives = 84/175 (48%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G+
Sbjct: 60 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGV 119
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AGA F S ++ Q+LLMG E R
Sbjct: 120 KFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWATQVLLMGAVEGYRIA------ 173
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E +P YPGG +PLGLA D E K+KE+KNG + +
Sbjct: 174 -----GGPLG-----EVTDPLYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAM 217
>gi|467794|emb|CAA47950.1| chlorophyll a/b binding protein [Pinus contorta]
Length = 274
Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 60/175 (34%), Positives = 84/175 (48%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G+
Sbjct: 73 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGV 132
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AGA F S ++ Q++LMG E R
Sbjct: 133 KFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIA------ 186
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E +P YPGG +PLGLA D E K+KEIKNG + +
Sbjct: 187 -----GGPLG-----EVTDPIYPGGS-FDPLGLADDPDAFAELKVKEIKNGRLAM 230
>gi|339716054|gb|AEJ88274.1| putative chlorophyll a/b binding protein [Wolffia australiana]
Length = 279
Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 60/172 (34%), Positives = 84/172 (48%), Gaps = 34/172 (19%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRE 125
P YL+G + GD+G+DP GLG+ PE Y EL+HAR+AM G AG + + G
Sbjct: 81 PAYLNGEVPGDYGYDPFGLGKKPEDFAKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 140
Query: 126 LP--VWYEAGAVEFKFASTRTLF------------IVQLLLMGFAETKRYMDYISPGSQT 171
P VW++ GA+ +T F I +++L+G AE R ++ +
Sbjct: 141 GPEAVWFKTGALLLD-GNTLNYFGKNIPINLVVAVIAEVVLLGGAEYYRIINGLD----- 194
Query: 172 KEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
LE L +PGGP +PLGLA D A K KEIKNG + +
Sbjct: 195 -------LEDKL------HPGGP-FDPLGLASDPDQAAILKAKEIKNGRLAM 232
>gi|224068679|ref|XP_002302798.1| predicted protein [Populus trichocarpa]
gi|222844524|gb|EEE82071.1| predicted protein [Populus trichocarpa]
Length = 266
Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 60/175 (34%), Positives = 84/175 (48%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G+
Sbjct: 65 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGV 124
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AGA F S ++ Q++LMG E R
Sbjct: 125 KFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWATQVVLMGAVEGYRIA------ 178
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E +P YPGG +PLGLA D E K+KEIKNG + +
Sbjct: 179 -----GGPLG-----EVTDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAM 222
>gi|307106007|gb|EFN54254.1| hypothetical protein CHLNCDRAFT_59709 [Chlorella variabilis]
Length = 243
Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 60/175 (34%), Positives = 84/175 (48%), Gaps = 33/175 (18%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRE 125
P YL G GD+G+D GL DPE+ Y + E++HAR+AM G G + +LL+ G
Sbjct: 45 PSYLKGEYPGDYGWDTAGLSADPETFSRYRELEVIHARWAMLGALGCVTPELLQKNGAAN 104
Query: 126 L--PVWYEAGAVEFK--------------FASTRTLFIVQLLLMGFAETKRYMDYISPGS 169
VW++AGA F+ S + + Q++LMG E R ++ G
Sbjct: 105 FGEAVWFKAGAQIFQDGGLDYLGNANLVHAQSIVAVLLTQIVLMGLIEGYR----VNGGP 160
Query: 170 QTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
A E +P YP G +PLGLA D E K+KEIKNG + +V
Sbjct: 161 ------------AGEITDPIYP-GEAFDPLGLADDPDTLAELKVKEIKNGRLAMV 202
>gi|242045502|ref|XP_002460622.1| hypothetical protein SORBIDRAFT_02g032040 [Sorghum bicolor]
gi|241923999|gb|EER97143.1| hypothetical protein SORBIDRAFT_02g032040 [Sorghum bicolor]
Length = 262
Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 86/175 (49%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G+
Sbjct: 61 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGV 120
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ VQ++LMG E R
Sbjct: 121 KFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRI------- 173
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E ++P YPGG +PLGLA D E K+KE+KNG + +
Sbjct: 174 ----AGGPLG-----EVVDPLYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAM 218
>gi|157965829|gb|ABW06951.1| chloroplast light-harvesting complex I protein precursor [Euglena
gracilis]
Length = 556
Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 72/215 (33%), Positives = 100/215 (46%), Gaps = 43/215 (20%)
Query: 18 SFICNDVNKSSIGITSAFLPAKSGTTRRYLATVVRAQQRPTWLPGVDPPPYLDGTLAGDF 77
+FI + N IT+A R A + +R W+PGV P +L+ TL GD
Sbjct: 141 AFINDGAN-----ITTAMFATAGKKVRPTPAPAAASTERLLWIPGVKAPEHLNNTLVGDR 195
Query: 78 GFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEF 137
GFDPL LG+DP +L + +E+ H R AM AG L +LLR G+ WY+ AV+
Sbjct: 196 GFDPLNLGKDPNALERFRVSEVFHGRLAMLAFAGALVPELLR--GV----AWYD--AVKT 247
Query: 138 KFASTRTLFIVQL-LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEP-------G 189
T T F++ L + G E RY +G F E EG EP
Sbjct: 248 PDPITLTTFLLALAVATGPIELWRY-----------DGRFPAWE---EGEEPEPKVADIA 293
Query: 190 YPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
YPG +P + + E KLKE+KNG + ++
Sbjct: 294 YPGA---DPFEWSSE-----EAKLKELKNGRLAMI 320
Score = 80.5 bits (197), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 71/215 (33%), Positives = 100/215 (46%), Gaps = 43/215 (20%)
Query: 18 SFICNDVNKSSIGITSAFLPAKSGTTRRYLATVVRAQQRPTWLPGVDPPPYLDGTLAGDF 77
+FI + N IT+A R A + +R W+PGV P +L+ TL GD
Sbjct: 342 AFINDGAN-----ITTAMFATAGKKVRPTPAPAAASTERLLWIPGVKAPEHLNNTLVGDR 396
Query: 78 GFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEF 137
GFDPL LG++P +L + +E+ H R AM AG L +LLR G+ WY+ AV+
Sbjct: 397 GFDPLNLGKNPNALERFRVSEVFHGRLAMLAFAGALVPELLR--GV----AWYD--AVKT 448
Query: 138 KFASTRTLFIVQL-LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEP-------G 189
T T F++ L + G E RY +G F E EG EP
Sbjct: 449 PDPITLTTFLLALAVATGPIELWRY-----------DGRFPAWE---EGEEPEPKVANIA 494
Query: 190 YPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
YPG +P + + E KLKE+KNG + ++
Sbjct: 495 YPGA---DPFEWSSE-----EAKLKELKNGRLAMI 521
Score = 42.0 bits (97), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 48/149 (32%), Positives = 66/149 (44%), Gaps = 38/149 (25%)
Query: 84 LGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTR 143
LG+DP +L + +E+ H R AM AG L +LLR G+ WY+ AV T
Sbjct: 1 LGKDPNALERFRVSEVFHGRLAMLAFAGALVPELLR--GV----AWYD--AVHTPDPITL 52
Query: 144 TLFIVQLL-LMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEP-------GYPGGPL 195
T F++ L G E RY +G F E EG EP YPG
Sbjct: 53 TTFLLVLAGATGPIELWRY-----------DGRFPAWE---EGEEPEPKVADIAYPGA-- 96
Query: 196 LNPLGLAKDIRNAREWKLKEIKNGLICLV 224
+P + + E KLKE+KNG + ++
Sbjct: 97 -DPFEWSSE-----EAKLKELKNGRLAMI 119
>gi|168043963|ref|XP_001774452.1| predicted protein [Physcomitrella patens subsp. patens]
gi|4757371|dbj|BAA77273.1| chlorophyll a/b-binding protein precursor [Physcomitrella patens]
gi|162674164|gb|EDQ60676.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 268
Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 60/175 (34%), Positives = 85/175 (48%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+ P YL+G AGD+G+D GL DPE+ + E++HAR+AM G G L +LL +G+
Sbjct: 67 ETPSYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCLTPELLAKSGV 126
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AGA F S ++ Q++LMG E R
Sbjct: 127 KFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVA------ 180
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G + +P YPGG +PLGLA D E K+KEIKNG + +
Sbjct: 181 -----GGPLG-----DVTDPIYPGGS-FDPLGLADDPDTFAELKVKEIKNGRLAM 224
>gi|307106821|gb|EFN55066.1| hypothetical protein CHLNCDRAFT_35848 [Chlorella variabilis]
Length = 219
Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 64/205 (31%), Positives = 98/205 (47%), Gaps = 32/205 (15%)
Query: 27 SSIGITSAFLPAKSGTTRRYLATVVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGE 86
++I SA + A R TV++A WLPG D P YL+ L +GFDPLGL +
Sbjct: 2 AAIVAPSATVRATFNVQRPRARTVMKAGN---WLPGSDTPAYLE-NLPASYGFDPLGLAK 57
Query: 87 DPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFAST---- 142
+ SL+ + ++E++H R+AM G AG+L ++L + P+ G F ++
Sbjct: 58 EAPSLQRFKESEVIHGRWAMLGAAGVLGVEVLGYGNWYDAPLPLVQGGSATYFGASIPFD 117
Query: 143 -RTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGL 201
TL ++ M AE+ R A E + YPGGP +P G+
Sbjct: 118 LGTLAAIEFAAMAGAESFR--------------------GAAEPEKRVYPGGP-FDPAGM 156
Query: 202 AKDIRNAREWKLKEIKNGLICLVLC 226
+K N E + KEIKNG + ++ C
Sbjct: 157 SKG--NQDELRTKEIKNGRLAMIAC 179
>gi|53627204|gb|AAU89253.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus contorta]
Length = 256
Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 85/175 (48%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G+
Sbjct: 70 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGV 129
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AGA F S ++ Q++LMG E R G
Sbjct: 130 KFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIA-----G 184
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
+E + +P YPGG +PLGLA D E K+KEIKNG + +
Sbjct: 185 GPLREVT-----------DPIYPGGS-FDPLGLADDPDAFAELKVKEIKNGRLAM 227
>gi|102139977|gb|ABF70112.1| chlorophyll A-B binding protein (CAB), putative [Musa balbisiana]
Length = 267
Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 60/175 (34%), Positives = 83/175 (47%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 66 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 125
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AGA F S ++ Q++LMG E R
Sbjct: 126 KFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVILMGAVEGYRIA------ 179
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E +P YPGG +PLGLA D E K+KEIKNG + +
Sbjct: 180 -----GGPLG-----EVTDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAM 223
>gi|115775|sp|P10049.1|CB21_PINTH RecName: Full=Chlorophyll a-b binding protein type I,
chloroplastic; Short=CAB; Short=LHCP; Flags: Precursor
gi|20935|emb|CAA31773.1| chlorophylla/b-binding preprotein (AA -37 to 229) [Pinus
thunbergii]
Length = 266
Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 64/190 (33%), Positives = 89/190 (46%), Gaps = 16/190 (8%)
Query: 42 TTRRYLATVVRAQQRPTWLPGVDP--PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAEL 99
T R ++ RP +L P YL G GD+G+D + DPE+ + E+
Sbjct: 41 TVRSAPESIWYGPDRPKYLGPFSEGTPSYLTGEFPGDYGWDTAAVSADPETFAKNRELEV 100
Query: 100 VHARFAMAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK-----FASTRTLFIVQLLLM 153
+H R+AM G G +F +LL G++ VW++AGA F +A L Q +L
Sbjct: 101 IHCRWAMLGALGCVFPELLAKNGLKFGEAVWFKAGAQIFSEGGLDYAGNPNLIHAQSILA 160
Query: 154 GFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKL 213
+A M I EG G EGL+P PGG +PLGLA D E K+
Sbjct: 161 IWACQVVLMGLI-------EGYRVGGGTLGEGLDPLLPGG-AFDPLGLADDPEACAELKV 212
Query: 214 KEIKNGLICL 223
KEIKNG + +
Sbjct: 213 KEIKNGRLAM 222
>gi|226496924|ref|NP_001148598.1| chlorophyll a-b binding protein 8 [Zea mays]
gi|195620680|gb|ACG32170.1| chlorophyll a-b binding protein 8 [Zea mays]
Length = 151
Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 45/102 (44%), Positives = 61/102 (59%), Gaps = 7/102 (6%)
Query: 129 WYEAGAVE-----FKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAAL 183
W++ G + +A + TLF+ + LMGFAE +R D+ +PGS K+ F GLE L
Sbjct: 12 WFKTGVIPPAGTYNYWADSYTLFVFNMALMGFAEHRRLQDWYNPGSMGKQ-YFLGLEKFL 70
Query: 184 EGL-EPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
G +P YPGGPL NPLG K + E KLKEIKNG + ++
Sbjct: 71 AGSGDPSYPGGPLFNPLGFGKTEKEMNELKLKEIKNGRLAML 112
>gi|326488085|dbj|BAJ89881.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 84/175 (48%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 65 EPPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHCRWAMLGALGCVFPELLARNGV 124
Query: 124 R-ELPVWYEAGAVEFK--------------FASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 125 KFGEAVWFKAGSQIFNEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVA------ 178
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E ++P YPGG +PLGLA D E K+KEIKNG + +
Sbjct: 179 -----GGPLG-----EIVDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAM 222
>gi|209868185|gb|ACI90632.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus tabuliformis var. henryi]
gi|209868187|gb|ACI90633.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus hwangshanensis]
gi|209868189|gb|ACI90634.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus tabuliformis]
Length = 254
Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 60/175 (34%), Positives = 83/175 (47%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 75 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 134
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AGA F S ++ Q++LMG E R
Sbjct: 135 KFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIA------ 188
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E +P YPGG +PLGLA D E K+KEIKNG + +
Sbjct: 189 -----GGPLG-----EVTDPIYPGGS-FDPLGLADDPDAFAELKVKEIKNGRLAM 232
>gi|148514657|gb|ABQ81856.1| chloroplast chlorophyll a/b binding protein [Phyllostachys edulis]
Length = 265
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 86/175 (49%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G AGD+G+D GL DPE+ + E++H+R+AM G G +F +LL G+
Sbjct: 64 EPPSYLTGEFAGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGV 123
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 124 QFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRI------- 176
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E ++P YPGG +PLGLA D E K+KE+KNG + +
Sbjct: 177 ----AGGPLG-----EVVDPLYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAM 221
>gi|326497177|dbj|BAK02173.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 84/175 (48%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 65 EPPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHCRWAMLGALGCVFPELLARNGV 124
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 125 KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRV------- 177
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E ++P YPGG +PLGLA D E K+KEIKNG + +
Sbjct: 178 ----AGGPLG-----EIVDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAM 222
>gi|255548299|ref|XP_002515206.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223545686|gb|EEF47190.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 267
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 60/175 (34%), Positives = 83/175 (47%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 66 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 125
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AGA F S ++ Q++LMG E R
Sbjct: 126 KFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWATQVVLMGAVEGYRIA------ 179
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E +P YPGG +PLGLA D E K+KEIKNG + +
Sbjct: 180 -----GGPLG-----EVTDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAM 223
>gi|326509659|dbj|BAJ87045.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 86/175 (49%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 65 EPPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHCRWAMLGALGCVFPELLARNGV 124
Query: 124 R-ELPVWYEAGAVEF-----------KFASTRTLFIV---QLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F F +++ + Q++LMG E R
Sbjct: 125 KFGEAVWFKAGSQIFSEGGLDYLGNPSFVHAQSILAIWACQVVLMGAVEGYRVA------ 178
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E ++P YPGG +PLGLA D E K+KE+KNG + +
Sbjct: 179 -----GGPLG-----EIVDPLYPGGS-FDPLGLADDPEAFAELKVKEVKNGRLAM 222
>gi|261351266|gb|ACX71300.1| chloroplast pigment-binding protein CP26 [Capsicum annuum]
Length = 287
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 60/174 (34%), Positives = 85/174 (48%), Gaps = 38/174 (21%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRE 125
P YL+G + GD+G+DP GL + PE Y EL+HAR+AM G AG + + G
Sbjct: 89 PEYLNGEVPGDYGYDPFGLSKKPEDFAKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 148
Query: 126 LP--VWYEAGAVEFKFASTRTLF--------------IVQLLLMGFAETKRYMDYISPGS 169
P VW++ GA+ TL+ I +++L+G AE R ++ +
Sbjct: 149 GPEAVWFKTGAL---LLDGNTLYYFGKNIPINLVLAVIAEVVLVGGAEYYRIINGLD--- 202
Query: 170 QTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
LE L +PGGP +PLGLAKD A K+KEIKNG + +
Sbjct: 203 ---------LEDKL------HPGGP-FDPLGLAKDPDQAAILKVKEIKNGRLAM 240
>gi|145079118|tpg|DAA05899.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm9 [Acetabularia acetabulum]
Length = 229
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 64/188 (34%), Positives = 89/188 (47%), Gaps = 36/188 (19%)
Query: 55 QRPTWLPGV---DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAG 111
RP WL D P YL G GD+G+D GL DPE+ + Y + EL+HAR+AM G G
Sbjct: 16 DRPKWLGPFSEGDVPSYLTGEFPGDYGWDTAGLSADPETFKAYREQELIHARWAMLGALG 75
Query: 112 ILFTDLL-RVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQLLLMGF 155
+ ++L + G+ VW++AG+ F+ S + Q++LMG
Sbjct: 76 CVTPEILAKYAGVSCGESVWFKAGSQIFQEGGLDYLGNPSLVHAQSILAILGCQVVLMGL 135
Query: 156 AETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKE 215
E R G G EGL+P +PG +PLGLA D E K+KE
Sbjct: 136 IEAYRV-----------NGGPLG-----EGLDPLHPGDK-FDPLGLADDPDTFAELKVKE 178
Query: 216 IKNGLICL 223
IKNG + +
Sbjct: 179 IKNGRLAM 186
>gi|168296|gb|AAA33396.1| light-harvesting chlorophyll a/b protein precursor [Lemna gibba]
Length = 266
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 60/175 (34%), Positives = 85/175 (48%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+ P YL G AGD+G+D GL DPE+ + E++HAR+AM G G +F +LL G+
Sbjct: 65 EAPSYLTGEFAGDYGWDTAGLSADPETFAKNRELEVIHARWAMLGALGCVFPELLARNGV 124
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 125 KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVVLMGAVEGYRVA------ 178
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E ++P YPGG +PLGLA D E K+KEIKNG + +
Sbjct: 179 -----GGPLG-----EVVDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAM 222
>gi|194689644|gb|ACF78906.1| unknown [Zea mays]
Length = 156
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/120 (39%), Positives = 66/120 (55%), Gaps = 4/120 (3%)
Query: 106 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 165
M G AGI + L G+ P WY AG ++ F T TLFI++L+L+G+AE +R+ D I
Sbjct: 1 MLGAAGIFIPEFLTKIGVLNTPFWYTAGEQQY-FTDTTTLFIIELILIGWAEGRRWADII 59
Query: 166 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAK-DIRNAREWKLKEIKNGLICLV 224
PGS + F L G + GYPGG +PLG +E + KEIKNG + ++
Sbjct: 60 KPGSVNTDPIF--PSNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAML 117
>gi|102140026|gb|ABF70157.1| chlorophyll A-B binding protein (CAB), putative [Musa acuminata]
Length = 264
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 59/173 (34%), Positives = 82/173 (47%), Gaps = 32/173 (18%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR- 124
P YL G GD+G+D GL DPE+ + E++H R+AM G G +F ++L G++
Sbjct: 65 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHGRWAMLGALGCVFPEILAKNGVKF 124
Query: 125 ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPGSQ 170
VW++AGA F S ++ Q++LMGF E R
Sbjct: 125 GEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYR---------- 174
Query: 171 TKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G EGL+ YPGG +PLGLA D E K+KEIKNG + +
Sbjct: 175 ------VGGGPLGEGLDAIYPGGA-FDPLGLADDPDAFAELKVKEIKNGRLAM 220
>gi|115806|sp|P14279.1|CB25_SOLLC RecName: Full=Chlorophyll a-b binding protein 5, chloroplastic;
AltName: Full=LHCII type I CAB-5; Short=LHCP; Flags:
Precursor
gi|170392|gb|AAA34142.1| chlorophyll a/b-binding protein precursor, partial [Solanum
lycopersicum]
Length = 237
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 61/190 (32%), Positives = 90/190 (47%), Gaps = 16/190 (8%)
Query: 42 TTRRYLATVVRAQQRPTWLP--GVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAEL 99
T + ++ + RP +L P YL G GD+G+D GL DPE+ + E+
Sbjct: 12 TVKSAPQSIWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEV 71
Query: 100 VHARFAMAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK-----FASTRTLFIVQLLLM 153
+H R+AM G G +F ++L G+ VW++AG+ F + L Q +L
Sbjct: 72 IHCRWAMLGALGCVFPEILSKNGVTFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILA 131
Query: 154 GFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKL 213
+A M ++ EG G EGL+ YPGG +PLGLA D E K+
Sbjct: 132 IWASQVVLMGFV-------EGYRVGGGPLGEGLDKIYPGG-AFDPLGLADDPEAFAELKV 183
Query: 214 KEIKNGLICL 223
KEIKNG + +
Sbjct: 184 KEIKNGRLAM 193
>gi|310696692|gb|ADP06401.1| putative chlorophyll A/B binding protein [Hevea brasiliensis]
Length = 175
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 61/175 (34%), Positives = 85/175 (48%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 8 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 67
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AGA F S ++ VQ++LMG E R I+ G
Sbjct: 68 KFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYR----IAGG 123
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
E +P YPGG +PLGLA D E K+KEIKNG + +
Sbjct: 124 PLG------------EVTDPIYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAM 165
>gi|688315|gb|AAC78690.1| chlorophyll a/b-binding protein [Pinus thunbergii]
Length = 274
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 60/175 (34%), Positives = 83/175 (47%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 73 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 132
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AGA F S ++ Q++LMG E R
Sbjct: 133 KFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIA------ 186
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E +P YPGG +PLGLA D E K+KEIKNG + +
Sbjct: 187 -----GGPLG-----EVTDPIYPGGS-FDPLGLADDPDAFAELKVKEIKNGRLAM 230
>gi|188572008|gb|ACD64978.1| chloroplast chlorophyll a/b-binding protein [Ophiopogon japonicus]
Length = 264
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/166 (34%), Positives = 82/166 (49%), Gaps = 14/166 (8%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 63 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 122
Query: 124 R-ELPVWYEAGAVEFK-----FASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFF 177
+ VW++AGA F + +L Q +L +A M + EG
Sbjct: 123 KFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWASQVVLMGAV-------EGYRI 175
Query: 178 GLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
E +P YPGG +PLGLA D E K+KEIKNG + +
Sbjct: 176 AGGPLGEVTDPLYPGGS-FDPLGLADDPEAFSELKVKEIKNGRLAM 220
>gi|168044688|ref|XP_001774812.1| predicted protein [Physcomitrella patens subsp. patens]
gi|41529316|dbj|BAD08519.1| light-harvesting chlorophyll a/b-binding protein 2 [Physcomitrella
patens subsp. patens]
gi|162673836|gb|EDQ60353.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 267
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 60/175 (34%), Positives = 85/175 (48%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+ P YL+G AGD+G+D GL DPE+ + E++HAR+AM G G + +LL +G+
Sbjct: 66 ETPSYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCVTPELLAKSGV 125
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AGA F S ++ Q++LMG E R
Sbjct: 126 KFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVA------ 179
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E +P YPGG +PLGLA D E K+KEIKNG + +
Sbjct: 180 -----GGPLG-----EVTDPIYPGGS-FDPLGLADDPDTFAELKVKEIKNGRLAM 223
>gi|340002459|gb|AEK26372.1| chloroplast photosystem II chlorophyll a/b binding protein [Sedum
alfredii]
Length = 265
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/164 (35%), Positives = 82/164 (50%), Gaps = 14/164 (8%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR- 124
P YL G GD+G+D GL DPE+ + E++H+R+AM G G +F ++L G++
Sbjct: 66 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKF 125
Query: 125 ELPVWYEAGAVEFK-----FASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGL 179
VW++AGA F + L Q +L +A M I EG G
Sbjct: 126 GEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWASQVVLMGLI-------EGYRVGG 178
Query: 180 EAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
EGL+ YPGG +PLGLA D E K+KE+KNG + +
Sbjct: 179 GPLGEGLDKIYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAM 221
>gi|357118764|ref|XP_003561119.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 1 [Brachypodium distachyon]
gi|357118766|ref|XP_003561120.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 2 [Brachypodium distachyon]
gi|357118768|ref|XP_003561121.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 3 [Brachypodium distachyon]
Length = 266
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 85/175 (48%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + EL+H+R+AM G G +F +LL G+
Sbjct: 65 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELELIHSRWAMLGALGCVFPELLARNGV 124
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 125 KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVA------ 178
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E ++P YPGG +PLGLA D E K+KE+KNG + +
Sbjct: 179 -----GGPLG-----EIVDPLYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAM 222
>gi|168053792|ref|XP_001779318.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669234|gb|EDQ55825.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 263
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 60/175 (34%), Positives = 84/175 (48%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+ P YL+G AGD+G+D GL DPE+ + E++HAR+AM G G + +LL G+
Sbjct: 62 ETPSYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCVTPELLAKNGV 121
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AGA F S ++ Q++LMG E R
Sbjct: 122 KFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVA------ 175
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E +P YPGG +PLGLA D E K+KEIKNG + +
Sbjct: 176 -----GGPLG-----EVTDPIYPGGS-FDPLGLADDPDTFAELKVKEIKNGRLAM 219
>gi|102139745|gb|ABF69952.1| chlorophyll A-B binding protein (CAB), putative [Musa acuminata]
Length = 265
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 60/175 (34%), Positives = 83/175 (47%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 64 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 123
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AGA F S ++ Q++LMG E R
Sbjct: 124 KFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVILMGAVEGYRIA------ 177
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E +P YPGG +PLGLA D E K+KEIKNG + +
Sbjct: 178 -----GGPLG-----EVTDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAM 221
>gi|115811|sp|P12062.1|CB26_PETSP RecName: Full=Chlorophyll a-b binding protein 37, chloroplastic;
AltName: Full=LHCII type I CAB-37; Short=LHCP; Flags:
Precursor
gi|20512|emb|CAA28639.1| chlorophyll a/b binding protein [Petunia x hybrida]
Length = 265
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 61/190 (32%), Positives = 90/190 (47%), Gaps = 16/190 (8%)
Query: 42 TTRRYLATVVRAQQRPTWLP--GVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAEL 99
T + ++ + RP +L P YL G GD+G+D GL DPE+ + E+
Sbjct: 40 TVKSAPQSIWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEV 99
Query: 100 VHARFAMAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK-----FASTRTLFIVQLLLM 153
+H R+AM G G +F ++L G+ VW++AG+ F + L Q +L
Sbjct: 100 IHCRWAMLGALGCVFPEILSKNGVTFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILA 159
Query: 154 GFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKL 213
+A M ++ EG G EGL+ YPGG +PLGLA D E K+
Sbjct: 160 IWAAQVVLMGFV-------EGYRVGGGPLGEGLDKIYPGGA-FDPLGLADDPEAFAELKV 211
Query: 214 KEIKNGLICL 223
KEIKNG + +
Sbjct: 212 KEIKNGRLAM 221
>gi|374095596|gb|AEY85026.1| light-harvesting complex II protein [Cajanus cajan]
Length = 262
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 85/175 (48%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G+
Sbjct: 61 EPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGV 120
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG++ F S ++ Q++LMG E R
Sbjct: 121 KFGEAVWFKAGSLIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIA------ 174
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E +P YPGG +PLGLA D E K+KE+KNG + +
Sbjct: 175 -----GGPLG-----EVTDPIYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAM 218
>gi|3126854|gb|AAC15992.1| chlorophyll a/b binding protein [Oryza sativa Japonica Group]
Length = 263
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/173 (33%), Positives = 83/173 (47%), Gaps = 32/173 (18%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR- 124
P YL G GD+G+D GL DPE+ + E++H+R+AM G G +F ++L G++
Sbjct: 64 PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNGVKF 123
Query: 125 ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPGSQ 170
VW++AGA F S ++ VQ++LMGF E R
Sbjct: 124 GEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYR---------- 173
Query: 171 TKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G EGL+ YP G +PLGLA D E K+KE+KNG + +
Sbjct: 174 ------VGGGPLGEGLDKVYPSG-AFDPLGLADDPDTFAELKVKELKNGRLAM 219
>gi|15235029|ref|NP_192772.1| chlorophyll a-b binding protein CP26 [Arabidopsis thaliana]
gi|28558077|sp|Q9XF89.1|CB5_ARATH RecName: Full=Chlorophyll a-b binding protein CP26, chloroplastic;
AltName: Full=LHCB5; AltName: Full=LHCIIc; AltName:
Full=Light-harvesting complex II protein 5; Flags:
Precursor
gi|4741958|gb|AAD28776.1|AF134129_1 Lhcb5 protein [Arabidopsis thaliana]
gi|11908106|gb|AAG41482.1|AF326900_1 putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|12642916|gb|AAK00400.1|AF339718_1 putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|14190463|gb|AAK55712.1|AF380631_1 AT4g10340/F24G24_140 [Arabidopsis thaliana]
gi|15983446|gb|AAL11591.1|AF424597_1 AT4g10340/F24G24_140 [Arabidopsis thaliana]
gi|4538963|emb|CAB39787.1| chlorophyll a/b-binding protein-like [Arabidopsis thaliana]
gi|7267731|emb|CAB78157.1| chlorophyll a/b-binding protein-like [Arabidopsis thaliana]
gi|15809718|gb|AAL06787.1| AT4g10340/F24G24_140 [Arabidopsis thaliana]
gi|332657469|gb|AEE82869.1| chlorophyll a-b binding protein CP26 [Arabidopsis thaliana]
Length = 280
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/160 (33%), Positives = 83/160 (51%), Gaps = 10/160 (6%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRE 125
P YL+G +AGD+G+DP GLG+ PE+ Y EL+HAR+AM G AG + + L G
Sbjct: 82 PEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHARWAMLGAAGFIIPEALNKYGANC 141
Query: 126 LP--VWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAAL 183
P VW++ GA+ +T F + + + ++ ++ + L
Sbjct: 142 GPEAVWFKTGALLLD-GNTLNYFGKNIPI------NLVLAVVAEVVLLGGAEYYRITNGL 194
Query: 184 EGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
+ + +PGGP +PLGLAKD K+KEIKNG + +
Sbjct: 195 DFEDKLHPGGP-FDPLGLAKDPEQGALLKVKEIKNGRLAM 233
>gi|285804077|gb|ADC35579.1| chloroplast chlorophyll a/b binding protein [Lycoris radiata]
Length = 265
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/166 (34%), Positives = 82/166 (49%), Gaps = 14/166 (8%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 64 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 123
Query: 124 R-ELPVWYEAGAVEFK-----FASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFF 177
+ VW++AGA F + +L Q +L +A M + EG
Sbjct: 124 KFGEAVWFKAGAQIFSDGGLDYLGNSSLVHAQSILAIWATQVVLMGAV-------EGYRI 176
Query: 178 GLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
E +P YPGG +PLGLA D E K+KEIKNG + +
Sbjct: 177 AGGPLGEVTDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAM 221
>gi|28630973|gb|AAO45885.1| chlorophyll a/b-binding protein precursor [Citrus limon]
Length = 216
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 60/171 (35%), Positives = 82/171 (47%), Gaps = 32/171 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 63 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 122
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AGA F S ++ Q++LMG E R
Sbjct: 123 KFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIA------ 176
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNG 219
G G E +P YPGG +PLGLA D + E K+KEIKNG
Sbjct: 177 -----GGPLG-----EVTDPLYPGGS-FDPLGLADDPKAFAELKVKEIKNG 216
>gi|167997439|ref|XP_001751426.1| predicted protein [Physcomitrella patens subsp. patens]
gi|168066892|ref|XP_001785364.1| predicted protein [Physcomitrella patens subsp. patens]
gi|168066898|ref|XP_001785367.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162663036|gb|EDQ49825.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162663039|gb|EDQ49828.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162697407|gb|EDQ83743.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 267
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 61/175 (34%), Positives = 84/175 (48%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+ P YL G AGD+G+D GL DPE+ + E++HAR+AM G G L +LL +G+
Sbjct: 66 ETPSYLTGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCLTPELLAKSGV 125
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AGA F S ++ Q++LMG E R
Sbjct: 126 KFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVA------ 179
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E +P YPGG +PLGLA D E K+KEIKNG + +
Sbjct: 180 -----GGPLG-----EVTDPIYPGGS-FDPLGLADDPDTFAELKVKEIKNGRLAM 223
>gi|53627206|gb|AAU89254.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus merkusii]
Length = 256
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 60/175 (34%), Positives = 83/175 (47%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 70 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 129
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AGA F S ++ Q++LMG E R
Sbjct: 130 KFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIA------ 183
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E +P YPGG +PLGLA D E K+KEIKNG + +
Sbjct: 184 -----GGPLG-----EVTDPIYPGGS-FDPLGLADDPDAFAELKVKEIKNGRLAM 227
>gi|53627226|gb|AAU89264.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus nelsonii]
Length = 256
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 60/175 (34%), Positives = 83/175 (47%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 70 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 129
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AGA F S ++ Q++LMG E R
Sbjct: 130 KFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVILMGAVEGYRIA------ 183
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E +P YPGG +PLGLA D E K+KEIKNG + +
Sbjct: 184 -----GGPLG-----EVTDPIYPGGS-FDPLGLADDPDAFAELKVKEIKNGRLAM 227
>gi|53627222|gb|AAU89262.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus remota]
Length = 256
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 60/175 (34%), Positives = 83/175 (47%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 70 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 129
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AGA F S ++ Q++LMG E R
Sbjct: 130 KFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVILMGAVEGYRIA------ 183
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E +P YPGG +PLGLA D E K+KEIKNG + +
Sbjct: 184 -----GGPLG-----EVTDPIYPGGS-FDPLGLADDPDAFAELKVKEIKNGRLAM 227
>gi|413968458|gb|AFW90566.1| chlorophyll a/b-binding protein [Solanum tuberosum]
Length = 271
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 69/235 (29%), Positives = 100/235 (42%), Gaps = 46/235 (19%)
Query: 15 SSSSFICNDVNKSSIGITSAFLPAKSGTTRRYLATVVRAQQRPTWLPGVDPPPYL----- 69
S+F+ V KS G +R + V++ + W G D P YL
Sbjct: 7 QQSAFVGQAVGKSQNEFVRKV--GSCGESRITMRRTVKSAPQSIWY-GEDRPKYLGPFSE 63
Query: 70 ------DGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
G GD+G+D GL DPE+ + E++H R+AM G G +F ++L G+
Sbjct: 64 QTPSYSTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGV 123
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMGF E R
Sbjct: 124 KFGEAVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMGFVEGYR-------- 175
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G EGL+ YPGG +PLGLA D E K+KEIKNG + +
Sbjct: 176 --------VGGGPLGEGLDKIYPGGA-FDPLGLADDPEAFAELKVKEIKNGRLAM 221
>gi|237651899|gb|ACR08639.1| chloroplast chlorophyll A/B binding protein [Mangifera indica]
Length = 264
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 60/175 (34%), Positives = 83/175 (47%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 63 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 122
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AGA F S ++ Q++LMG E R
Sbjct: 123 KFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVILMGAVEGYRVA------ 176
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E +P YPGG +PLGLA D E K+KEIKNG + +
Sbjct: 177 -----GGPLG-----EVTDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAM 220
>gi|115817|sp|P15193.1|CB2A_PINSY RecName: Full=Chlorophyll a-b binding protein type 2 member 1A,
chloroplastic; AltName: Full=Chlorophyll a-b binding
protein type II 1A; Short=CAB; AltName: Full=LHCP;
Flags: Precursor
gi|20661|emb|CAA32657.1| unnamed protein product [Pinus sylvestris]
Length = 278
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 60/175 (34%), Positives = 84/175 (48%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G+
Sbjct: 77 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGV 136
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AGA F S ++ Q++LMG E R
Sbjct: 137 KFGEAVWFKAGAQIFSEGGLDYLGSPQLIHAQSILAIWACQVILMGAIEGYRVA------ 190
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E +P YPGG +PLGLA D E K+KEIKNG + +
Sbjct: 191 -----GGPLG-----EVTDPIYPGGN-FDPLGLADDPDAFAELKVKEIKNGRLAM 234
>gi|209868183|gb|ACI90631.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus bungeana]
Length = 254
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 60/175 (34%), Positives = 83/175 (47%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 75 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 134
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AGA F S ++ Q++LMG E R
Sbjct: 135 KFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVILMGAVEGYRIA------ 188
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E +P YPGG +PLGLA D E K+KEIKNG + +
Sbjct: 189 -----GGPLG-----EVTDPIYPGGS-FDPLGLADDPDAFAELKVKEIKNGRLAM 232
>gi|53627202|gb|AAU89252.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus radiata]
Length = 256
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 60/175 (34%), Positives = 83/175 (47%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 70 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 129
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AGA F S ++ Q++LMG E R
Sbjct: 130 KFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIA------ 183
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E +P YPGG +PLGLA D E K+KEIKNG + +
Sbjct: 184 -----GGPLG-----EVTDPIYPGGS-FDPLGLADDPDAFAELKVKEIKNGRLAM 227
>gi|2804572|dbj|BAA24493.1| chlorophyll a/b-binding protein [Fagus crenata]
Length = 264
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 84/175 (48%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G+
Sbjct: 63 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGV 122
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AGA F S ++ Q++LMG E R
Sbjct: 123 KFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIA------ 176
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E +P YPGG +PLGLA D E K+KE+KNG + +
Sbjct: 177 -----GGPLG-----EVTDPLYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAM 220
>gi|242070573|ref|XP_002450563.1| hypothetical protein SORBIDRAFT_05g007070 [Sorghum bicolor]
gi|241936406|gb|EES09551.1| hypothetical protein SORBIDRAFT_05g007070 [Sorghum bicolor]
Length = 282
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 60/172 (34%), Positives = 84/172 (48%), Gaps = 34/172 (19%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRE 125
P YL G + GD+G+DP GLG+ PE Y EL+HAR+AM G AG + + G
Sbjct: 84 PEYLTGEVPGDYGYDPFGLGKKPEDFAKYQAYELIHARWAMLGAAGAVIPEACNKFGANC 143
Query: 126 LP--VWYEAGAVEFKFASTRTLF------------IVQLLLMGFAETKRYMDYISPGSQT 171
P VW++ GA+ +T F I +++L+G AE R ++ +
Sbjct: 144 GPEAVWFKTGALLLD-GNTLNYFGNSIPINLVVAVIAEVVLVGGAEYYRIINGLD----- 197
Query: 172 KEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
LE L +PGGP +PLGLA D A K+KEIKNG + +
Sbjct: 198 -------LEDKL------HPGGP-FDPLGLASDPDQAAILKVKEIKNGRLAM 235
>gi|326499874|dbj|BAJ90772.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 84/175 (48%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 65 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 124
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 125 KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIA------ 178
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E ++P YPGG +PLGLA D E K+KEIKNG + +
Sbjct: 179 -----GGPLG-----EIVDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAM 222
>gi|3293555|gb|AAC25775.1| chlorophyll a/b binding protein [Medicago sativa]
Length = 266
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 85/175 (48%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G+
Sbjct: 65 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGV 124
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 125 KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIA------ 178
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E ++P YPGG +PLGLA D E K+KE+KNG + +
Sbjct: 179 -----GGPLG-----EVVDPLYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAM 222
>gi|326493298|dbj|BAJ85110.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326493328|dbj|BAJ85125.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 84/175 (48%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 65 EPPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHCRWAMLGALGCVFPELLARNGV 124
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 125 KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVA------ 178
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E ++P YPGG +PLGLA D E K+KE+KNG + +
Sbjct: 179 -----GGPLG-----EIVDPLYPGGS-FDPLGLADDPEAFAELKVKEVKNGRLAM 222
>gi|63003222|dbj|BAD97888.1| CAB homologue1 [Lemna paucicostata]
Length = 231
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 60/175 (34%), Positives = 85/175 (48%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+ P YL G AGD+G+D GL DPE+ + E++HAR+AM G G +F +LL G+
Sbjct: 34 EAPSYLTGEFAGDYGWDTAGLSADPETFAKNRELEVIHARWAMLGALGCVFPELLARNGV 93
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 94 KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVA------ 147
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E ++P YPGG +PLGLA D E K+KEIKNG + +
Sbjct: 148 -----GGPLG-----EVVDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAM 191
>gi|262410738|gb|ACY66805.1| chlorophyll a/b-binding protein [Pinus massoniana]
Length = 274
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 60/175 (34%), Positives = 83/175 (47%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 73 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 132
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AGA F S ++ Q++LMG E R
Sbjct: 133 KFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIA------ 186
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E +P YPGG +PLGLA D E K+KEIKNG + +
Sbjct: 187 -----GGPLG-----EVTDPIYPGGS-FDPLGLADDPDAFAELKVKEIKNGRLTM 230
>gi|53627198|gb|AAU89250.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus echinata]
Length = 253
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 60/175 (34%), Positives = 83/175 (47%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 70 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 129
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AGA F S ++ Q++LMG E R
Sbjct: 130 KFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIA------ 183
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E +P YPGG +PLGLA D E K+KEIKNG + +
Sbjct: 184 -----GGPLG-----EVTDPIYPGGS-FDPLGLADDPDAFAELKVKEIKNGRLAM 227
>gi|168003066|ref|XP_001754234.1| predicted protein [Physcomitrella patens subsp. patens]
gi|41529314|dbj|BAD08518.1| light-harvesting chlorophyll a/b-binding protein 1 [Physcomitrella
patens subsp. patens]
gi|162694788|gb|EDQ81135.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 267
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 72/231 (31%), Positives = 106/231 (45%), Gaps = 41/231 (17%)
Query: 10 LLQPSSSSSFICNDVNKSSIGITSAFLPAKSGTTRRYLATVVRAQQRPTWLP--GVDPPP 67
LLQP++ + V S +T +KS + ++ RP +L + P
Sbjct: 17 LLQPANE---LVRKVGTSQARVTMRKTVSKSSGSD----SIWYGADRPKFLGPFSGETPS 69
Query: 68 YLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR-EL 126
YL+G AGD+G+D GL DPE+ + E++HAR+AM G G L +LL +G++
Sbjct: 70 YLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCLTPELLAKSGVKFGE 129
Query: 127 PVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTK 172
VW++AGA F S ++ Q++LMG E R
Sbjct: 130 AVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVA---------- 179
Query: 173 EGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G + +P YPGG +PLGLA D E K+KEIKNG + +
Sbjct: 180 -GGPLG-----DVTDPIYPGGS-FDPLGLADDPDTFAELKVKEIKNGRLAM 223
>gi|307110008|gb|EFN58245.1| hypothetical protein CHLNCDRAFT_34387 [Chlorella variabilis]
Length = 336
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 82/182 (45%), Gaps = 15/182 (8%)
Query: 56 RPTWLP--GVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGIL 113
RP WL PP +L G L GD+G+DP GLG DP L YV+ EL+HAR+AM G G +
Sbjct: 128 RPLWLGPLSTQPPQHLSGELPGDYGWDPAGLGRDPAKLDRYVELELLHARWAMLGALGAV 187
Query: 114 FTDLLRVTGIREL--PVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQT 171
+LL++ G W+ G + V L + + + +
Sbjct: 188 VPELLQLAGSATFLEDRWWNVGYAKLTTGEELAYLGVPGLRVAGGQGVAIIAFCQ--VLL 245
Query: 172 KEGSFFGLEAALEGLEP---------GYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLIC 222
G + + LEP YPGG L +PL L+ D +++EIKNG +
Sbjct: 246 MFGPEYARACGISALEPLGVFLPGDKNYPGGWLFDPLQLSGDAERYEAMRVREIKNGRLA 305
Query: 223 LV 224
+V
Sbjct: 306 MV 307
>gi|388503990|gb|AFK40061.1| unknown [Medicago truncatula]
Length = 266
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 85/175 (48%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G+
Sbjct: 65 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGV 124
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 125 KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIA------ 178
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E ++P YPGG +PLGLA D E K+KE+KNG + +
Sbjct: 179 -----GGPLG-----EVVDPLYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAM 222
>gi|94404555|gb|ABF17940.1| putative chloroplast chlorophyll a/b-binding protein [Carya
cathayensis]
Length = 267
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 84/175 (48%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G+
Sbjct: 66 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGV 125
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AGA F S ++ Q++LMG E R
Sbjct: 126 KFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIA------ 179
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E +P YPGG +PLGLA D E K+KE+KNG + +
Sbjct: 180 -----GGPLG-----EVTDPIYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAM 223
>gi|53627220|gb|AAU89261.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus monophylla]
Length = 256
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 60/175 (34%), Positives = 83/175 (47%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 70 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 129
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AGA F S ++ Q++LMG E R
Sbjct: 130 KFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVILMGAVEGYRIA------ 183
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E +P YPGG +PLGLA D E K+KEIKNG + +
Sbjct: 184 -----GGPLG-----EVTDPIYPGGS-FDPLGLADDPDAFAELKVKEIKNGRLAM 227
>gi|326523787|dbj|BAJ93064.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 84/175 (48%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 65 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 124
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 125 KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIA------ 178
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E ++P YPGG +PLGLA D E K+KEIKNG + +
Sbjct: 179 -----GGPLG-----EIVDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAM 222
>gi|353167261|gb|AEQ67395.1| chloroplast chlorophyll A/B binding protein [Canarium album]
Length = 264
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 60/175 (34%), Positives = 83/175 (47%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 63 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 122
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AGA F S ++ Q++LMG E R
Sbjct: 123 KFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVILMGAVEGYRIA------ 176
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E +P YPGG +PLGLA D E K+KEIKNG + +
Sbjct: 177 -----GGPLG-----EVTDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAM 220
>gi|224085884|ref|XP_002307725.1| light-harvesting complex II protein Lhcb1 [Populus trichocarpa]
gi|118485884|gb|ABK94788.1| unknown [Populus trichocarpa]
gi|222857174|gb|EEE94721.1| light-harvesting complex II protein Lhcb1 [Populus trichocarpa]
Length = 264
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 84/175 (48%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G+
Sbjct: 63 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGV 122
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AGA F S ++ Q++LMG E R
Sbjct: 123 KFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWATQVVLMGAVEGYRIA------ 176
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E +P YPGG +PLGLA D E K+KE+KNG + +
Sbjct: 177 -----GGPLG-----EVTDPIYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAM 220
>gi|255557841|ref|XP_002519950.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223540996|gb|EEF42554.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 292
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/171 (33%), Positives = 82/171 (47%), Gaps = 32/171 (18%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRE 125
P YL G + GD+G+DP GL + PE Y EL+HAR+AM G AG + + G
Sbjct: 94 PEYLTGEVPGDYGYDPFGLSKKPEDFAKYQAYELIHARWAMLGAAGFIVPEAFNKFGANC 153
Query: 126 LP--VWYEAGAVEFKFASTRTL-----------FIVQLLLMGFAETKRYMDYISPGSQTK 172
P VW++ GA+ + I +++L+G AE R ++ +
Sbjct: 154 GPEAVWFKTGALLLDGGTLNYFGNSIPINLVVAVIAEVVLLGGAEYYRIINGLD------ 207
Query: 173 EGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
LE L +PGGP +PLGLAKD A K+KEIKNG + +
Sbjct: 208 ------LEDKL------HPGGP-FDPLGLAKDPDQAAILKVKEIKNGRLAM 245
>gi|307105157|gb|EFN53408.1| hypothetical protein CHLNCDRAFT_137219 [Chlorella variabilis]
Length = 258
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 61/176 (34%), Positives = 85/176 (48%), Gaps = 33/176 (18%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTG--- 122
P YL G GD+G+D GL DPE+ Y + EL+H+R+A+ G GIL + L+ +G
Sbjct: 54 PSYLKGEFPGDYGWDTAGLSADPETFARYREIELIHSRWALLGALGILTPEYLQRSGAVD 113
Query: 123 IRELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
E VW++AGA F S + Q++L+G AE RY
Sbjct: 114 FGEAAVWFKAGASIFGDDGLNYLGNPQLIHAQSIVATLLAQIVLVGTAEAYRY------- 166
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
EG ++ + + L YPGG +PLGL D E K+KEIKNG + V
Sbjct: 167 --AGEGP---VDTSGDKL---YPGG-FFDPLGLGDDPEALAELKVKEIKNGRLAQV 213
>gi|38096045|gb|AAR10886.1| chlorophyll a/b binding protein [Trifolium pratense]
Length = 266
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 85/175 (48%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G+
Sbjct: 65 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGV 124
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 125 KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIA------ 178
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E ++P YPGG +PLGLA D E K+KE+KNG + +
Sbjct: 179 -----GGPLG-----EVVDPLYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAM 222
>gi|224083006|ref|XP_002306927.1| light-harvesting complex II protein Lhcb1 [Populus trichocarpa]
gi|118487931|gb|ABK95787.1| unknown [Populus trichocarpa]
gi|118489514|gb|ABK96559.1| unknown [Populus trichocarpa x Populus deltoides]
gi|118489848|gb|ABK96723.1| unknown [Populus trichocarpa x Populus deltoides]
gi|118489863|gb|ABK96730.1| unknown [Populus trichocarpa x Populus deltoides]
gi|222856376|gb|EEE93923.1| light-harvesting complex II protein Lhcb1 [Populus trichocarpa]
Length = 264
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 84/175 (48%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G+
Sbjct: 63 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGV 122
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AGA F S ++ Q++LMG E R
Sbjct: 123 KFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWATQVVLMGAVEGYRIA------ 176
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E +P YPGG +PLGLA D E K+KE+KNG + +
Sbjct: 177 -----GGPLG-----EVTDPIYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAM 220
>gi|209868193|gb|ACI90636.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus massoniana]
Length = 233
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 60/175 (34%), Positives = 83/175 (47%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 54 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 113
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AGA F S ++ Q++LMG E R
Sbjct: 114 KFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIA------ 167
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E +P YPGG +PLGLA D E K+KEIKNG + +
Sbjct: 168 -----GGPLG-----EVTDPIYPGGS-FDPLGLADDPDAFAELKVKEIKNGRLAM 211
>gi|158523323|gb|ABW70800.1| chloroplast light harvesting chlorophyll a/b binding protein
[Populus euphratica]
Length = 263
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 84/175 (48%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G+
Sbjct: 62 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGV 121
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AGA F S ++ Q++LMG E R
Sbjct: 122 KFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWATQVVLMGAVEGYRI------- 174
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E +P YPGG +PLGLA D E K+KE+KNG + +
Sbjct: 175 ----AGGPLG-----EVTDPIYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAM 219
>gi|6716783|gb|AAF26741.1|AF220527_1 chlorophyll a/b binding protein precursor [Euphorbia esula]
Length = 268
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 72/238 (30%), Positives = 104/238 (43%), Gaps = 47/238 (19%)
Query: 5 VGRGFLLQPSSSSSFICNDVNKSSIGITSAFLPAKS---GTTR-RYLATVVRAQQRPTWL 60
G+ L PSS+S + N T P+ S G R +YL
Sbjct: 15 AGQAVKLSPSSASELMGNGRVSMRKAATKKVAPSGSPWYGPDRVKYLGPFSG-------- 66
Query: 61 PGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRV 120
+PP YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL
Sbjct: 67 ---EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLAR 123
Query: 121 TGIR-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYI 165
G++ VW++AG+ F S ++ Q++LMG E R
Sbjct: 124 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIA--- 180
Query: 166 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E ++P YPGG +PLGLA D E K+KE+KNG + +
Sbjct: 181 --------GGPLG-----EVVDPIYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAM 224
>gi|194697528|gb|ACF82848.1| unknown [Zea mays]
Length = 283
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 60/172 (34%), Positives = 83/172 (48%), Gaps = 34/172 (19%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRE 125
P YL G + GD+G+DP GLG+ PE Y EL+HAR+AM G AG + + G
Sbjct: 85 PEYLTGEVPGDYGYDPFGLGKKPEDFAKYQAYELIHARWAMLGAAGAVIPEACNKFGANC 144
Query: 126 LP--VWYEAGAVEFKFASTRTLF------------IVQLLLMGFAETKRYMDYISPGSQT 171
P VW++ GA+ +T F I +++L+G AE R + +
Sbjct: 145 GPEAVWFKTGALLLD-GNTLNYFGNSIPINLVVAVIAEVILVGGAEYYRITNGLD----- 198
Query: 172 KEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
LE L +PGGP +PLGLA D A K+KEIKNG + +
Sbjct: 199 -------LEDKL------HPGGP-FDPLGLASDPDQAAILKVKEIKNGRLAM 236
>gi|53627224|gb|AAU89263.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus longaeva]
Length = 253
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 60/175 (34%), Positives = 83/175 (47%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 67 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 126
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AGA F S ++ Q++LMG E R
Sbjct: 127 KFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVILMGAVEGYRIA------ 180
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E +P YPGG +PLGLA D E K+KEIKNG + +
Sbjct: 181 -----GGPLG-----EVTDPIYPGGS-FDPLGLADDPDAFAELKVKEIKNGRLAM 224
>gi|67772801|gb|AAY81729.1| chloroplast putative light harvesting chlorophyll a/b binding
protein, partial [Pinus gerardiana]
Length = 253
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 60/175 (34%), Positives = 83/175 (47%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 70 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 129
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AGA F S ++ Q++LMG E R
Sbjct: 130 KFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVILMGAVEGYRIA------ 183
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E +P YPGG +PLGLA D E K+KEIKNG + +
Sbjct: 184 -----GGPLG-----EVTDPIYPGGS-FDPLGLADDPDAFAELKVKEIKNGRLAM 227
>gi|357159913|ref|XP_003578597.1| PREDICTED: chlorophyll a-b binding protein 2, chloroplastic-like
isoform 6 [Brachypodium distachyon]
Length = 264
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 84/175 (48%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 63 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 122
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 123 KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRV------- 175
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E ++P YPGG +PLGLA D E K+KEIKNG + +
Sbjct: 176 ----AGGPLG-----EIVDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAM 220
>gi|386784577|gb|AFJ25031.1| chlorophyll a/b binding protein [Lonicera japonica]
Length = 265
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 62/199 (31%), Positives = 93/199 (46%), Gaps = 24/199 (12%)
Query: 41 GTTRRYLATVVRAQQRPTWLPGVDP----------PPYLDGTLAGDFGFDPLGLGEDPES 90
G++R + V++ + W P P YL G GD+G+D GL DPE+
Sbjct: 31 GSSRTTMRRTVKSTPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPET 90
Query: 91 LRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK-----FASTRT 144
+ E++H+R+AM G G +F ++L G++ VW++AG+ F +
Sbjct: 91 FAKNRELEVIHSRWAMLGALGCVFPEILAKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPN 150
Query: 145 LFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKD 204
L Q +L +A M I EG G EGL+ YPGG +PLGLA D
Sbjct: 151 LVHAQSILAIWASQVVLMGLI-------EGYRIGGGPLGEGLDSLYPGGA-FDPLGLADD 202
Query: 205 IRNAREWKLKEIKNGLICL 223
E K+KE+KNG + +
Sbjct: 203 PEAFAELKVKELKNGRLAM 221
>gi|357159898|ref|XP_003578592.1| PREDICTED: chlorophyll a-b binding protein 2, chloroplastic-like
isoform 1 [Brachypodium distachyon]
gi|357159901|ref|XP_003578593.1| PREDICTED: chlorophyll a-b binding protein 2, chloroplastic-like
isoform 2 [Brachypodium distachyon]
gi|357159904|ref|XP_003578594.1| PREDICTED: chlorophyll a-b binding protein 2, chloroplastic-like
isoform 3 [Brachypodium distachyon]
gi|357159907|ref|XP_003578595.1| PREDICTED: chlorophyll a-b binding protein 2, chloroplastic-like
isoform 4 [Brachypodium distachyon]
gi|357159910|ref|XP_003578596.1| PREDICTED: chlorophyll a-b binding protein 2, chloroplastic-like
isoform 5 [Brachypodium distachyon]
Length = 265
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 84/175 (48%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 64 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 123
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 124 KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRV------- 176
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E ++P YPGG +PLGLA D E K+KEIKNG + +
Sbjct: 177 ----AGGPLG-----EIVDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAM 221
>gi|357132518|ref|XP_003567877.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 1 [Brachypodium distachyon]
gi|357132520|ref|XP_003567878.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 2 [Brachypodium distachyon]
gi|357132522|ref|XP_003567879.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 3 [Brachypodium distachyon]
gi|357132524|ref|XP_003567880.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 4 [Brachypodium distachyon]
gi|357132526|ref|XP_003567881.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 5 [Brachypodium distachyon]
Length = 263
Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 84/175 (48%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 62 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 121
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 122 KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRV------- 174
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E ++P YPGG +PLGLA D E K+KEIKNG + +
Sbjct: 175 ----AGGPLG-----EIVDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAM 219
>gi|2765356|emb|CAA74179.1| chlorophyll a/b-binding protein [Beta vulgaris subsp. vulgaris]
Length = 264
Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 57/164 (34%), Positives = 83/164 (50%), Gaps = 14/164 (8%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR- 124
P YL G GD+G+D GL DPE+ + E++H+R+AM G G +F ++L G++
Sbjct: 65 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKF 124
Query: 125 ELPVWYEAGAVEFK-----FASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGL 179
VW++AG+ F+ + L Q +L +A M I EG G
Sbjct: 125 GEAVWFKAGSQIFQEGGLDYLGNPNLIHAQSILAIWASQVVLMGLI-------EGYRVGG 177
Query: 180 EAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
EGL+ YPGG +PLGLA D E K+KE+KNG + +
Sbjct: 178 GPLGEGLDKLYPGG-AFDPLGLADDPEAFAELKVKELKNGRLAM 220
>gi|326496044|dbj|BAJ90643.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326503592|dbj|BAJ86302.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 265
Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 84/175 (48%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 64 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 123
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 124 KFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRI------- 176
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E ++P YPGG +PLGLA D E K+KE+KNG + +
Sbjct: 177 ----AGGPLG-----EVVDPLYPGGS-FDPLGLADDPEAFAELKVKEVKNGRLAM 221
>gi|145079882|tpg|DAA05946.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca1 [Micromonas sp. CCMP490]
Length = 223
Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 57/183 (31%), Positives = 90/183 (49%), Gaps = 34/183 (18%)
Query: 49 TVVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAG 108
TV + R W+PG PP +L GTL D+GFDPLGLG++P +L + +AE++H+R+AM G
Sbjct: 30 TVGKVSARAVWMPGSTPPAHLTGTLPCDYGFDPLGLGKEPANLARFQEAEIIHSRWAMLG 89
Query: 109 VAGILFTDLLRVTGIRELPVWYEAGAVEFK-FASTRTLF------IVQLLLMGFAETKRY 161
VAG + +TG+ W EA + + + + F +++ +M F E +R
Sbjct: 90 VAGAAGQEA--ITGV----TWIEAPVQDSQTYLGAESPFPLPVVVAIEVFVMAFVEQQRS 143
Query: 162 MDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLI 221
+ P + YPGG +P G +K + K KEI NG +
Sbjct: 144 NEK-DPAKRL------------------YPGG-AFDPAGFSKGA-DFETLKKKEIANGRV 182
Query: 222 CLV 224
++
Sbjct: 183 AML 185
>gi|168009155|ref|XP_001757271.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162691394|gb|EDQ77756.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 265
Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 61/175 (34%), Positives = 84/175 (48%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+ P YL G AGD+G+D GL DPE+ + E++HAR+AM G G L +LL +G+
Sbjct: 64 ETPSYLTGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCLTPELLAKSGV 123
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AGA F S ++ Q++LMG E R
Sbjct: 124 KFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWASQVVLMGAVEGYRVA------ 177
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E +P YPGG +PLGLA D E K+KEIKNG + +
Sbjct: 178 -----GGPLG-----EITDPIYPGGS-FDPLGLADDPDTFAELKVKEIKNGRLAM 221
>gi|315140122|gb|ADT81035.1| LHC I type IV chlorophyll binding protein [Juniperus przewalskii]
gi|315140124|gb|ADT81036.1| LHC I type IV chlorophyll binding protein [Juniperus przewalskii]
gi|315140126|gb|ADT81037.1| LHC I type IV chlorophyll binding protein [Juniperus przewalskii]
gi|315140128|gb|ADT81038.1| LHC I type IV chlorophyll binding protein [Juniperus przewalskii]
gi|315140130|gb|ADT81039.1| LHC I type IV chlorophyll binding protein [Juniperus przewalskii]
gi|315140132|gb|ADT81040.1| LHC I type IV chlorophyll binding protein [Juniperus przewalskii]
gi|315140134|gb|ADT81041.1| LHC I type IV chlorophyll binding protein [Juniperus przewalskii]
gi|315140136|gb|ADT81042.1| LHC I type IV chlorophyll binding protein [Juniperus przewalskii]
Length = 128
Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 48/126 (38%), Positives = 74/126 (58%), Gaps = 8/126 (6%)
Query: 99 LVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAET 158
LV+ R M GVAG+L ++L GI +P WY+AG VE+ FAS+ TLF+++ +L + E
Sbjct: 1 LVNGRVGMLGVAGMLIPEVLTSIGILNVPKWYDAGKVEY-FASSSTLFVIEFILFHYVEL 59
Query: 159 KRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKN 218
+R+ D PGS ++ F +L + GYPGG + NPL + + E K KE+ N
Sbjct: 60 RRWQDIKYPGSVNQDPIF--KSYSLPPNDVGYPGG-IFNPLNFSPSL----EAKEKELAN 112
Query: 219 GLICLV 224
G + ++
Sbjct: 113 GRLAML 118
>gi|358248490|ref|NP_001240146.1| chlorophyll a-b binding protein 21, chloroplastic-like [Glycine
max]
gi|506629|gb|AAA50172.1| photosystem II type I chlorophyll a/b-binding protein [Glycine max]
gi|255636158|gb|ACU18421.1| unknown [Glycine max]
Length = 264
Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 84/175 (48%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G+
Sbjct: 63 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGV 122
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 123 KFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIA------ 176
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E +P YPGG +PLGLA D E K+KE+KNG + +
Sbjct: 177 -----GGPLG-----EVTDPIYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAM 220
>gi|242053513|ref|XP_002455902.1| hypothetical protein SORBIDRAFT_03g027040 [Sorghum bicolor]
gi|241927877|gb|EES01022.1| hypothetical protein SORBIDRAFT_03g027040 [Sorghum bicolor]
Length = 265
Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 84/175 (48%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 64 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 123
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 124 KFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRVA------ 177
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E ++P YPGG +PLGLA D E K+KEIKNG + +
Sbjct: 178 -----GGPLG-----EVVDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAM 221
>gi|224114357|ref|XP_002316737.1| light-harvesting complex II protein Lhcb1 [Populus trichocarpa]
gi|222859802|gb|EEE97349.1| light-harvesting complex II protein Lhcb1 [Populus trichocarpa]
Length = 264
Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 84/175 (48%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G+
Sbjct: 63 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGV 122
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AGA F S ++ Q++LMG E R
Sbjct: 123 KFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWATQVVLMGAVEGYRIA------ 176
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E +P YPGG +PLGLA D E K+KE+KNG + +
Sbjct: 177 -----GGPLG-----EITDPIYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAM 220
>gi|14423661|sp|P92919.1|CB23_APIGR RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Allergen=Api g 3; Flags: Precursor
gi|1769849|emb|CAA99993.1| chlorophyll a/b binding protein [Apium graveolens]
Length = 264
Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 57/175 (32%), Positives = 87/175 (49%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+ P YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G+
Sbjct: 63 EAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGV 122
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S +++ Q++LMG E R
Sbjct: 123 KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILSIWATQVILMGAVEGYRVA------ 176
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E ++P YPGG +PLGLA+D + E K+KE+KNG + +
Sbjct: 177 -----GGPLG-----EIVDPLYPGGS-FDPLGLAEDPERSAELKVKELKNGRLAM 220
>gi|357122389|ref|XP_003562898.1| PREDICTED: chlorophyll a-b binding protein of LHCII type III,
chloroplastic-like [Brachypodium distachyon]
Length = 267
Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 60/174 (34%), Positives = 84/174 (48%), Gaps = 32/174 (18%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLL-RVTGIR 124
P YL G GD+G+D GL DPE+ E++H R+AM G G +F ++L + G+
Sbjct: 66 PSYLSGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCVFPEVLQKWVGVE 125
Query: 125 -ELPVWYEAGAVEF-----------KFASTRTLFIV---QLLLMGFAETKRYMDYISPGS 169
+ PVW++AGA F +++ V Q+LLMG E R
Sbjct: 126 FKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGSQVLLMGLVEGFRIN------- 178
Query: 170 QTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
GL+ EG + YPGG +PLGLA D E K+KEIKNG + +
Sbjct: 179 --------GLDGVGEGNDL-YPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAM 223
>gi|356559635|ref|XP_003548104.1| PREDICTED: chlorophyll a-b binding protein 21, chloroplastic-like
[Glycine max]
Length = 264
Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 84/175 (48%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G+
Sbjct: 63 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGV 122
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 123 KFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIA------ 176
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E +P YPGG +PLGLA D E K+KE+KNG + +
Sbjct: 177 -----GGPLG-----EVTDPIYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAM 220
>gi|162461137|ref|NP_001105374.1| chlorophyll a/b-binding apoprotein CP26 precursor [Zea mays]
gi|733456|gb|AAA64415.1| chlorophyll a/b-binding apoprotein CP26 precursor [Zea mays]
Length = 283
Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 60/172 (34%), Positives = 83/172 (48%), Gaps = 34/172 (19%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRE 125
P YL G + GD+G+DP GLG+ PE Y EL+HAR+AM G AG + + G
Sbjct: 85 PEYLTGEVPGDYGYDPFGLGKKPEDFAKYQAYELIHARWAMLGAAGAVIPEACNKFGANC 144
Query: 126 LP--VWYEAGAVEFKFASTRTLF------------IVQLLLMGFAETKRYMDYISPGSQT 171
P VW++ GA+ +T F I +++L+G AE R + +
Sbjct: 145 GPEAVWFKTGALLLD-GNTLNYFGNSIPINLVVAVIAEVVLVGGAEYYRITNGLD----- 198
Query: 172 KEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
LE L +PGGP +PLGLA D A K+KEIKNG + +
Sbjct: 199 -------LEDKL------HPGGP-FDPLGLASDPDQAAILKVKEIKNGRLAM 236
>gi|346987809|gb|AEO51755.1| chloroplast chlorophyll A/B binding protein [Dimocarpus longan]
Length = 263
Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 60/171 (35%), Positives = 82/171 (47%), Gaps = 32/171 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 62 EPPSYLTGEFPGDYGWDAAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 121
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AGA F S ++ Q++LMG E R I+ G
Sbjct: 122 KFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYR----IAGG 177
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNG 219
K +P YPGG +PLGLA D E K+KEIKNG
Sbjct: 178 PLGKV------------TDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNG 215
>gi|116778744|gb|ABK20976.1| unknown [Picea sitchensis]
gi|116779697|gb|ABK21395.1| unknown [Picea sitchensis]
gi|116790882|gb|ABK25775.1| unknown [Picea sitchensis]
gi|148908056|gb|ABR17147.1| unknown [Picea sitchensis]
gi|148908517|gb|ABR17370.1| unknown [Picea sitchensis]
gi|224284311|gb|ACN39891.1| unknown [Picea sitchensis]
gi|224284945|gb|ACN40202.1| unknown [Picea sitchensis]
gi|224285575|gb|ACN40506.1| unknown [Picea sitchensis]
gi|224285579|gb|ACN40508.1| unknown [Picea sitchensis]
Length = 274
Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 84/175 (48%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G+
Sbjct: 73 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGV 132
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AGA F S ++ Q++LMG E R
Sbjct: 133 KFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIA------ 186
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E +P YPGG +PLGLA D E K+KE+KNG + +
Sbjct: 187 -----GGPLG-----EITDPIYPGGS-FDPLGLADDPDAFAELKVKELKNGRLAM 230
>gi|115793|sp|P27523.1|CB23_HORVU RecName: Full=Chlorophyll a-b binding protein of LHCII type III,
chloroplastic; Short=CAB; Flags: Precursor
gi|19023|emb|CAA44881.1| type III LHCII CAB precursor protein [Hordeum vulgare]
Length = 268
Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 59/174 (33%), Positives = 85/174 (48%), Gaps = 32/174 (18%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLL-RVTGIR 124
P YL+G GD+G+D GL DPE+ E++H R+AM G G +F ++L + G+
Sbjct: 67 PSYLNGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCVFPEVLQKWVGVE 126
Query: 125 -ELPVWYEAGAVEF-----------KFASTRTLFIV---QLLLMGFAETKRYMDYISPGS 169
+ PVW++AG+ F +++ V Q+LLMG E R
Sbjct: 127 FKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFRIN------- 179
Query: 170 QTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
GL+ EG + YPGG +PLGLA D E K+KEIKNG + +
Sbjct: 180 --------GLDGVGEGNDL-YPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAM 224
>gi|227138|prf||1615137A chlorophyll a/b binding protein P25
Length = 226
Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 64/190 (33%), Positives = 89/190 (46%), Gaps = 16/190 (8%)
Query: 42 TTRRYLATVVRAQQRPTWLPGVDP--PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAEL 99
T R ++ RP +L P YL G GD+G+D + DPE+ + E+
Sbjct: 1 TVRSAPESIWYGPDRPKYLGPFSEGTPSYLTGEFPGDYGWDTAAVSADPETFAKNRELEV 60
Query: 100 VHARFAMAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK-----FASTRTLFIVQLLLM 153
+H R+AM G G +F +LL G++ VW++AGA F + L Q +L
Sbjct: 61 IHCRWAMLGALGCVFPELLVKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILA 120
Query: 154 GFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKL 213
+A M I EG G EGL+P YPGG +PLGLA D E K+
Sbjct: 121 IWACQVVLMGLI-------EGYRVGGGPLGEGLDPLYPGG-AFDPLGLADDPEAFAELKV 172
Query: 214 KEIKNGLICL 223
KEIKNG + +
Sbjct: 173 KEIKNGRLAM 182
>gi|356576567|ref|XP_003556402.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic-like
[Glycine max]
Length = 288
Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 57/171 (33%), Positives = 82/171 (47%), Gaps = 32/171 (18%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRE 125
P YL G + GD+G+DP GL + PE Y EL+HAR+AM G AG + + G
Sbjct: 90 PEYLTGEVPGDYGYDPFGLSKKPEDFAKYQAFELIHARWAMLGAAGFIIPEAFNKYGANC 149
Query: 126 LP--VWYEAGAVEFKFASTRTL-----------FIVQLLLMGFAETKRYMDYISPGSQTK 172
P VW++ GA+ + + +++L+G AE R ++ +
Sbjct: 150 GPEAVWFKTGALLLDGGTLNYFGKPIPINLIVAVVAEIVLVGGAEYYRIINGLD------ 203
Query: 173 EGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
LE L +PGGP +PLGLAKD A K+KEIKNG + +
Sbjct: 204 ------LEDKL------HPGGP-FDPLGLAKDPDQAALLKVKEIKNGRLAM 241
>gi|53627212|gb|AAU89257.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus flexilis]
gi|53627214|gb|AAU89258.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus lambertiana]
gi|53627216|gb|AAU89259.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus monticola]
gi|53627218|gb|AAU89260.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus strobus]
Length = 256
Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 84/175 (48%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G+
Sbjct: 70 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLAKNGV 129
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AGA F S ++ Q++LMG E R
Sbjct: 130 KFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVILMGAVEGYRIA------ 183
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E +P YPGG +PLGLA D E K+KE+KNG + +
Sbjct: 184 -----GGPLG-----EVTDPIYPGGS-FDPLGLADDPDAFAELKVKELKNGRLAM 227
>gi|449461699|ref|XP_004148579.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
[Cucumis sativus]
gi|449518125|ref|XP_004166094.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
[Cucumis sativus]
Length = 265
Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 56/166 (33%), Positives = 83/166 (50%), Gaps = 14/166 (8%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G+
Sbjct: 64 EPPSYLKGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGV 123
Query: 124 R-ELPVWYEAGAVEFK-----FASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFF 177
+ VW++AG+ F + +L Q +L +A M + EG
Sbjct: 124 KFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWASQVVLMGAV-------EGYRI 176
Query: 178 GLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
E +P YPGG +PLGLA D E K+KE+KNG + +
Sbjct: 177 AGGPLGEITDPIYPGGS-FDPLGLADDPEAFSELKVKELKNGRLAM 221
>gi|242053511|ref|XP_002455901.1| hypothetical protein SORBIDRAFT_03g027030 [Sorghum bicolor]
gi|241927876|gb|EES01021.1| hypothetical protein SORBIDRAFT_03g027030 [Sorghum bicolor]
Length = 266
Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 84/175 (48%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 65 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 124
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 125 KFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRVA------ 178
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E ++P YPGG +PLGLA D E K+KEIKNG + +
Sbjct: 179 -----GGPLG-----EVVDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAM 222
>gi|255557387|ref|XP_002519724.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223541141|gb|EEF42697.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 265
Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 83/175 (47%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 64 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 123
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 124 KFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRVA------ 177
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E +P YPGG +PLGLA D E K+KEIKNG + +
Sbjct: 178 -----GGPLG-----EVTDPIYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAM 221
>gi|116792229|gb|ABK26282.1| unknown [Picea sitchensis]
Length = 288
Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 66/221 (29%), Positives = 95/221 (42%), Gaps = 77/221 (34%)
Query: 56 RPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYV-------------------- 95
RP WLPG P +LDG+L GD+GFDPLGLG+ E L++ V
Sbjct: 66 RPLWLPGAKAPEWLDGSLVGDYGFDPLGLGKPSEYLQYDVDSLDQNLDLNLPGDLLGDFV 125
Query: 96 ----------------------QAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAG 133
+ EL+H R+AM GV G L + TGI W +AG
Sbjct: 126 GDPDIKPSIQPYSEVFGLQRFRECELIHGRWAMLGVLGALAVE--GFTGI----YWQDAG 179
Query: 134 AVE-------FKFA---STRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAAL 183
VE F F+ + TL ++++LL+G+ E +R + + P ++
Sbjct: 180 KVELVEGSSYFGFSLPFNMSTLILIEVLLLGYIEFQRNAE-VDPETRL------------ 226
Query: 184 EGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
YPGG +P GLA + KL EIK+ + +V
Sbjct: 227 ------YPGGKYFDPFGLAVEEIKKDRLKLAEIKHARLAMV 261
>gi|356559639|ref|XP_003548106.1| PREDICTED: chlorophyll a-b binding protein 21, chloroplastic
isoform 1 [Glycine max]
gi|356559641|ref|XP_003548107.1| PREDICTED: chlorophyll a-b binding protein 21, chloroplastic
isoform 2 [Glycine max]
gi|356559643|ref|XP_003548108.1| PREDICTED: chlorophyll a-b binding protein 21, chloroplastic
isoform 3 [Glycine max]
Length = 264
Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 84/175 (48%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G+
Sbjct: 63 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGV 122
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 123 KFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIA------ 176
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E +P YPGG +PLGLA D E K+KE+KNG + +
Sbjct: 177 -----GGPLG-----EVTDPIYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAM 220
>gi|145079101|tpg|DAA05898.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm1 [Acetabularia acetabulum]
Length = 198
Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 61/171 (35%), Positives = 82/171 (47%), Gaps = 33/171 (19%)
Query: 69 LDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIREL-- 126
L G GD+G+D GL DPE+ + Y + EL+HAR+AM G G + ++L G
Sbjct: 1 LTGEFPGDYGWDTAGLSADPETFKKYRETELIHARWAMLGALGCVTPEILARYGGTSFGE 60
Query: 127 PVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPGSQTK 172
VW+ AGA FK S + I Q++LMG E R ++ G
Sbjct: 61 SVWFRAGAQIFKDGGLDYLGSPALIHAQSIGAIVISQVILMGLIEGYR----VNGGP--- 113
Query: 173 EGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
A EGL+P YP G +PLGLA D E K+KEIKNG + +
Sbjct: 114 ---------AGEGLDPLYP-GESFDPLGLADDPDTFAELKIKEIKNGRLAM 154
>gi|357118770|ref|XP_003561122.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 4 [Brachypodium distachyon]
Length = 233
Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 85/175 (48%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + EL+H+R+AM G G +F +LL G+
Sbjct: 32 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELELIHSRWAMLGALGCVFPELLARNGV 91
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 92 KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVA------ 145
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E ++P YPGG +PLGLA D E K+KE+KNG + +
Sbjct: 146 -----GGPLG-----EIVDPLYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAM 189
>gi|255638437|gb|ACU19528.1| unknown [Glycine max]
Length = 287
Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 57/171 (33%), Positives = 82/171 (47%), Gaps = 32/171 (18%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRE 125
P YL G + GD+G+DP GL + PE Y EL+HAR+AM G AG + + G
Sbjct: 89 PEYLTGEVPGDYGYDPFGLSKKPEDFAKYQAFELIHARWAMLGAAGFIIPEAFNKYGANC 148
Query: 126 LP--VWYEAGAVEFKFASTRTL-----------FIVQLLLMGFAETKRYMDYISPGSQTK 172
P VW++ GA+ + + +++L+G AE R ++ +
Sbjct: 149 GPEAVWFKTGALLLDGGTLNYFGKPIPINFILAVVAEIVLVGGAEYYRIINGLD------ 202
Query: 173 EGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
LE L +PGGP +PLGLAKD A K+KEIKNG + +
Sbjct: 203 ------LEDKL------HPGGP-FDPLGLAKDPDQAALLKVKEIKNGRLAM 240
>gi|53627210|gb|AAU89256.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus chiapensis]
Length = 256
Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 84/175 (48%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G+
Sbjct: 70 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLAKNGV 129
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AGA F S ++ Q++LMG E R
Sbjct: 130 KFGEAVWFKAGAQIFSEGGLDHLGNPSLIHAQSILAIWACQVILMGAVEGYRIA------ 183
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E +P YPGG +PLGLA D E K+KE+KNG + +
Sbjct: 184 -----GGPLG-----EVTDPIYPGGS-FDPLGLADDPDAFAELKVKELKNGRLAM 227
>gi|193875800|gb|ACF24536.1| light harvesting complex protein LHCII-1 [Gymnochlora stellata]
Length = 335
Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 70/217 (32%), Positives = 98/217 (45%), Gaps = 49/217 (22%)
Query: 39 KSGTTRRYLATVVRAQQ-------------RPTWLPGVDP---PPYLDGTLAGDFGFDPL 82
KSG + +AT V Q+ R WL P YL G GD+G+D
Sbjct: 87 KSGLSMNQIATAVTCQKIGGAACQEWYGPDRALWLGPFSEGAVPSYLTGEFPGDYGWDTQ 146
Query: 83 GLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLL-RVTGIR-ELPVWYEAGAVEF--- 137
GL DP + Y + E++HAR+AM G G + +LL + +G+ PVW++AG+ F
Sbjct: 147 GLSADPTTFAAYRETEVIHARWAMLGALGCVTPELLSKYSGVPIAEPVWFKAGSQIFAEG 206
Query: 138 -----------KFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGL 186
S + Q++LMG AE R ++ G A EGL
Sbjct: 207 GLDYLGNPSLIHAQSILAILACQVVLMGGAEAYR----VNGGP------------AGEGL 250
Query: 187 EPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
+ PGG +PLGLA D E K+KEIKNG + +
Sbjct: 251 DAINPGGA-FDPLGLADDPDTFAELKVKEIKNGRLAM 286
>gi|607150|emb|CAA57408.1| light harvesting chlorophyll a /b-binding protein Lhcb1*2-1 [Picea
abies]
Length = 274
Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 84/175 (48%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G+
Sbjct: 73 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGV 132
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AGA F S ++ Q++LMG E R
Sbjct: 133 KFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVILMGAVEGYRIA------ 186
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E +P YPGG +PLGLA D E K+KE+KNG + +
Sbjct: 187 -----GGPLG-----EITDPIYPGGS-FDPLGLADDPDAFAELKVKELKNGRLAM 230
>gi|116790890|gb|ABK25779.1| unknown [Picea sitchensis]
Length = 288
Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 66/221 (29%), Positives = 94/221 (42%), Gaps = 77/221 (34%)
Query: 56 RPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYV-------------------- 95
RP WLPG P +LDG+L GD+GFDPLGLG+ E L++ V
Sbjct: 66 RPLWLPGAKAPEWLDGSLVGDYGFDPLGLGKPSEYLQYDVDSLDQNLDLNLPGDLLGDFV 125
Query: 96 ----------------------QAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAG 133
+ EL+H R+AM GV G L + TGI W +AG
Sbjct: 126 GDPDIKPSIQPYSEVFGLQRFRECELIHGRWAMLGVLGALAVE--GFTGI----YWQDAG 179
Query: 134 AVE-------FKFA---STRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAAL 183
VE F F+ + TL ++++LL+G+ E +R + + P ++
Sbjct: 180 KVELVEGSSYFGFSLPFNMSTLILIEVLLLGYIEFQRNAE-VDPETRL------------ 226
Query: 184 EGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
YPGG +P GLA D L EIK+ + +V
Sbjct: 227 ------YPGGKYFDPFGLAVDEIKKDRLNLAEIKHARLAMV 261
>gi|607152|emb|CAA57409.1| light harvesting chlorophyll a /b-binding protein Lhcb1*2-2 [Picea
abies]
Length = 275
Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 84/175 (48%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G+
Sbjct: 74 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGV 133
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AGA F S ++ Q++LMG E R
Sbjct: 134 KFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVILMGAVEGYRIA------ 187
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E +P YPGG +PLGLA D E K+KE+KNG + +
Sbjct: 188 -----GGPLG-----EITDPIYPGGS-FDPLGLADDPDAFAELKVKELKNGRLAM 231
>gi|115771|sp|P12329.1|CB21_MAIZE RecName: Full=Chlorophyll a-b binding protein 1, chloroplastic;
AltName: Full=LHCII type I CAB-1; Short=LHCP; Flags:
Precursor
gi|22224|emb|CAA32900.1| unnamed protein product [Zea mays]
gi|194699340|gb|ACF83754.1| unknown [Zea mays]
gi|195607416|gb|ACG25538.1| chlorophyll a-b binding protein 2 [Zea mays]
gi|195613460|gb|ACG28560.1| chlorophyll a-b binding protein 2 [Zea mays]
gi|414886622|tpg|DAA62636.1| TPA: light harvesting chlorophyll a/b binding protein2 [Zea mays]
Length = 262
Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 85/175 (48%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G+
Sbjct: 61 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGV 120
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 121 KFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRI------- 173
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E ++P YPGG +PLGLA D E K+KE+KNG + +
Sbjct: 174 ----AGGPLG-----EVVDPLYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAM 218
>gi|3928140|emb|CAA10284.1| chlorophyll a/b binding protein [Cicer arietinum]
Length = 266
Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 84/175 (48%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G+
Sbjct: 65 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGV 124
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 125 KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVVLMGAVEGYRIA------ 178
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E +P YPGG +PLGLA D E K+KE+KNG + +
Sbjct: 179 -----GGPLG-----EVTDPLYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAM 222
>gi|326510047|dbj|BAJ87240.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 84/175 (48%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 65 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGSIFPELLARNGV 124
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 125 KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIA------ 178
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E ++P YPGG +PLGLA D E K+KEIKNG + +
Sbjct: 179 -----GGPLG-----EIVDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAM 222
>gi|449459364|ref|XP_004147416.1| PREDICTED: chlorophyll a-b binding protein 40, chloroplastic-like
[Cucumis sativus]
Length = 265
Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 56/166 (33%), Positives = 83/166 (50%), Gaps = 14/166 (8%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G+
Sbjct: 64 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGV 123
Query: 124 R-ELPVWYEAGAVEFK-----FASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFF 177
+ VW++AG+ F + +L Q +L +A M + EG
Sbjct: 124 KFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWASQVVLMGAV-------EGYRI 176
Query: 178 GLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
E +P YPGG +PLGLA D E K+KE+KNG + +
Sbjct: 177 AGGPLGEVTDPIYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAM 221
>gi|307106431|gb|EFN54677.1| hypothetical protein CHLNCDRAFT_24450 [Chlorella variabilis]
Length = 189
Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 51/145 (35%), Positives = 74/145 (51%), Gaps = 30/145 (20%)
Query: 80 DPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKF 139
DPLGLG D + L+WY +AE + R+AMA VAGILFTD+L P W+EAGA E+ +
Sbjct: 28 DPLGLGVDSDRLKWYTEAEKTNGRWAMAAVAGILFTDVLGK------PKWFEAGAQEY-W 80
Query: 140 ASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPL 199
L ++ L++GF E KR+ + G+ G +P +P
Sbjct: 81 MDNNALLAIEFLVLGFLELKRFQGWKETGTS--------------GFLNAFP----FDPA 122
Query: 200 GLAKDIRNAREWKLKEIKNGLICLV 224
G+ N+ KE+KNG + +V
Sbjct: 123 GM-----NSPSMATKEVKNGRLAMV 142
>gi|356535308|ref|XP_003536189.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic-like
[Glycine max]
Length = 287
Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 57/171 (33%), Positives = 82/171 (47%), Gaps = 32/171 (18%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRE 125
P YL G + GD+G+DP GL + PE Y EL+HAR+AM G AG + + G
Sbjct: 89 PEYLTGEVPGDYGYDPFGLSKKPEDFAKYQAFELIHARWAMLGAAGFIIPEAFNKYGANC 148
Query: 126 LP--VWYEAGAVEFKFASTRTL-----------FIVQLLLMGFAETKRYMDYISPGSQTK 172
P VW++ GA+ + + +++L+G AE R ++ +
Sbjct: 149 GPEAVWFKTGALLLDGGTLNYFGKPIPINLILAVVAEIVLVGGAEYYRIINGLD------ 202
Query: 173 EGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
LE L +PGGP +PLGLAKD A K+KEIKNG + +
Sbjct: 203 ------LEDKL------HPGGP-FDPLGLAKDPDQAALLKVKEIKNGRLAM 240
>gi|255567270|ref|XP_002524616.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223536169|gb|EEF37824.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 265
Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 57/166 (34%), Positives = 82/166 (49%), Gaps = 14/166 (8%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 64 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 123
Query: 124 R-ELPVWYEAGAVEFK-----FASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFF 177
+ VW++AG+ F + +L Q +L +A M + EG
Sbjct: 124 KFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWASQVVLMGAV-------EGYRV 176
Query: 178 GLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
E +P YPGG +PLGLA D E K+KEIKNG + +
Sbjct: 177 AGGPLGEVTDPIYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAM 221
>gi|226510115|ref|NP_001148439.1| chlorophyll a-b binding protein 2 [Zea mays]
gi|195619284|gb|ACG31472.1| chlorophyll a-b binding protein 2 [Zea mays]
gi|414881723|tpg|DAA58854.1| TPA: chlorophyll a-b binding protein 2 [Zea mays]
Length = 264
Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 59/174 (33%), Positives = 83/174 (47%), Gaps = 32/174 (18%)
Query: 65 PPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR 124
PP YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G++
Sbjct: 64 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVK 123
Query: 125 -ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPGS 169
VW++AG+ F S ++ Q++LMG E R
Sbjct: 124 FGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVA------- 176
Query: 170 QTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E ++P YPGG +PLGLA D E K+KEIKNG + +
Sbjct: 177 ----GGPLG-----EVVDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAM 220
>gi|449527933|ref|XP_004170962.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic-like [Cucumis sativus]
Length = 265
Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 84/175 (48%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G+
Sbjct: 64 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGV 123
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 124 KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIA------ 177
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E +P YPGG +PLGLA D E K+KE+KNG + +
Sbjct: 178 -----GGPLG-----EVTDPIYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAM 221
>gi|307110329|gb|EFN58565.1| hypothetical protein CHLNCDRAFT_59584 [Chlorella variabilis]
Length = 249
Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 59/173 (34%), Positives = 81/173 (46%), Gaps = 34/173 (19%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRE 125
P YL G GD+G+D GL DP++ Y + E++HAR+AM G G + +LL T
Sbjct: 56 PSYLTGEFPGDYGWDTAGLSADPQTFARYREIEVIHARWAMLGALGCVVPELLDGT---N 112
Query: 126 LPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPGSQT 171
W+ AGA F S IVQ++LM + E R ++ G
Sbjct: 113 HIAWFNAGATIFSDDGLQYLGIPGLINAKSIVATLIVQVILMSYVEGYR----VNGGP-- 166
Query: 172 KEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
A GL+ YPGG +PLGLA D E K+KEIKNG + ++
Sbjct: 167 ----------AGTGLDAVYPGGS-FDPLGLADDPDTFSELKVKEIKNGRLAML 208
>gi|149392272|gb|ABR25974.1| chloroplast chlorophyll a-b binding protein precursor [Oryza sativa
Indica Group]
Length = 253
Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 58/173 (33%), Positives = 83/173 (47%), Gaps = 32/173 (18%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR- 124
P YL G GD+ +D GL DPE+ + E++H+R+AM G G +F ++L G++
Sbjct: 54 PSYLTGEFPGDYRWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNGVKF 113
Query: 125 ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPGSQ 170
VW++AGA F S ++ VQ++LMGF E R
Sbjct: 114 GEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYR---------- 163
Query: 171 TKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G EGL+ YPGG +PLGLA D E K+KE+KNG + +
Sbjct: 164 ------VGGGPLGEGLDKVYPGG-AFDPLGLADDPDTFAELKVKELKNGRLAM 209
>gi|414881719|tpg|DAA58850.1| TPA: chlorophyll a-b binding protein 48, Precursor [Zea mays]
Length = 264
Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 59/174 (33%), Positives = 83/174 (47%), Gaps = 32/174 (18%)
Query: 65 PPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR 124
PP YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G++
Sbjct: 64 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVK 123
Query: 125 -ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPGS 169
VW++AG+ F S ++ Q++LMG E R
Sbjct: 124 FGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVA------- 176
Query: 170 QTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E ++P YPGG +PLGLA D E K+KEIKNG + +
Sbjct: 177 ----GGPLG-----EVVDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAM 220
>gi|226358409|gb|ACO51067.1| chloroplast chlorophyll A-B binding protein [Gossypium hirsutum]
Length = 264
Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 83/175 (47%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 63 EPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPELLARNGV 122
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 123 KFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVILMGAVEGYRIA------ 176
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E +P YPGG +PLGLA D E K+KEIKNG + +
Sbjct: 177 -----GGPLG-----EVTDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAM 220
>gi|146150146|gb|ABQ02464.1| chloroplast chlorophyll a/b binding protein [Phyllostachys edulis]
Length = 263
Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 56/164 (34%), Positives = 82/164 (50%), Gaps = 14/164 (8%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR- 124
P YL G GD+G+D GL DPE+ + E++H+R+AM G G +F ++L G++
Sbjct: 64 PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNGVKF 123
Query: 125 ELPVWYEAGAVEFK-----FASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGL 179
VW++AGA F + L Q +L +A M ++ EG G
Sbjct: 124 GEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWASQVVLMGFV-------EGYRVGG 176
Query: 180 EAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
EGL+ YPGG +PLGLA D E K+KE+KN + +
Sbjct: 177 GPLGEGLDKVYPGG-AFDPLGLADDPDTFAELKVKELKNSRLAM 219
>gi|53627228|gb|AAU89265.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Picea sitchensis]
Length = 253
Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 84/175 (48%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G+
Sbjct: 70 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGV 129
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AGA F S ++ Q++LMG E R
Sbjct: 130 KFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIA------ 183
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E +P YPGG +PLGLA D E K+KE+KNG + +
Sbjct: 184 -----GGPLG-----EITDPIYPGGS-FDPLGLADDPDAFAELKVKELKNGRLAM 227
>gi|8954293|gb|AAD27879.2|AF139467_1 LHCII type I chlorophyll a/b binding protein [Vigna radiata]
Length = 263
Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 84/175 (48%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H+R+AM G GI+F + L G+
Sbjct: 62 EPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGIVFPEPLSRNGV 121
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 122 KFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIA------ 175
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E +P YPGG +PLGLA D E K+KE+KNG + +
Sbjct: 176 -----GGPLG-----EVTDPTYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAM 219
>gi|326506218|dbj|BAJ86427.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 83/175 (47%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 65 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 124
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q +LMG E R
Sbjct: 125 KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQAVLMGAVEGYRIA------ 178
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E ++P YPGG +PLGLA D E K+KEIKNG + +
Sbjct: 179 -----GGPLG-----EIVDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAM 222
>gi|449433636|ref|XP_004134603.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic-like isoform 1 [Cucumis sativus]
gi|449433638|ref|XP_004134604.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic-like isoform 2 [Cucumis sativus]
gi|449433640|ref|XP_004134605.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic-like isoform 3 [Cucumis sativus]
Length = 265
Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 84/175 (48%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G+
Sbjct: 64 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGV 123
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 124 KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIA------ 177
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E +P YPGG +PLGLA D E K+KE+KNG + +
Sbjct: 178 -----GGPLG-----EVTDPIYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAM 221
>gi|62176932|emb|CAG25596.1| putative chlorophyll a/b binding protein [Triticum durum]
Length = 250
Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 83/175 (47%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 60 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 119
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW+ AG+ F S ++ Q++LMG E R
Sbjct: 120 KFGEAVWFMAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIA------ 173
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E ++P YPGG +PLGLA D E K+KEIKNG + +
Sbjct: 174 -----GGPLG-----EIVDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAM 217
>gi|449433646|ref|XP_004134608.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic-like [Cucumis sativus]
Length = 265
Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 84/175 (48%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G+
Sbjct: 64 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGV 123
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 124 KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIA------ 177
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E +P YPGG +PLGLA D E K+KE+KNG + +
Sbjct: 178 -----GGPLG-----EVTDPIYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAM 221
>gi|67772803|gb|AAY81730.1| chloroplast putative light harvesting chlorophyll a/b binding
protein, partial [Pinus krempfii]
Length = 250
Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 67/207 (32%), Positives = 96/207 (46%), Gaps = 25/207 (12%)
Query: 34 AFLPAKSGTTRRYLATVVRAQQRPTWLPGVD-----------PPPYLDGTLAGDFGFDPL 82
A + +S T R AT A + P+ G D PP YL G GD+G+D
Sbjct: 28 AGVHGESRVTMRKSATKKFASESPSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTA 87
Query: 83 GLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--- 138
GL DPE+ + E++H+R+AM G G +F +LL G++ VW++AGA F
Sbjct: 88 GLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGG 147
Query: 139 --FASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLL 196
+ +L Q +L +A M + EG E +P YPGG
Sbjct: 148 LDYLGNPSLIHAQSILAIWASQVILMGAV-------EGYRIAGGPLGEVTDPIYPGGS-F 199
Query: 197 NPLGLAKDIRNAREWKLKEIKNGLICL 223
+PLGLA D E K+KE+KNG + +
Sbjct: 200 DPLGLADDPDAFAELKVKELKNGRLAM 226
>gi|227139|prf||1615137B chlorophyll a/b binding protein P27
Length = 233
Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 60/175 (34%), Positives = 84/175 (48%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G+
Sbjct: 32 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGV 91
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AGA F S ++ Q++LMG E R
Sbjct: 92 KFGEAVWFKAGAQIFSEGGLDYLGSPQLIHAQSILAIWACQVILMGAIEGYRVA------ 145
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E +P YPGG +PLGLA D E K+KEIKNG + +
Sbjct: 146 -----GGPLG-----EVTDPIYPGGN-FDPLGLADDPDAFAELKVKEIKNGRLAM 189
>gi|194700378|gb|ACF84273.1| unknown [Zea mays]
gi|195619060|gb|ACG31360.1| chlorophyll a-b binding protein 2 [Zea mays]
Length = 266
Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 85/175 (48%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G+
Sbjct: 65 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGV 124
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 125 KFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIA------ 178
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E ++P YPGG +PLGLA D E K+KE+KNG + +
Sbjct: 179 -----GGPLG-----EVVDPLYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAM 222
>gi|115807|sp|P12470.1|CB25_NICPL RecName: Full=Chlorophyll a-b binding protein E, chloroplastic;
AltName: Full=LHCII type I CAB-E; Short=LHCP; Flags:
Precursor
gi|170212|gb|AAA34056.1| chlorophyll a/b-binding protein-E [Nicotiana plumbaginifolia]
Length = 266
Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 57/166 (34%), Positives = 84/166 (50%), Gaps = 14/166 (8%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+ P YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 65 ESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 124
Query: 124 R-ELPVWYEAGAVEFK-----FASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFF 177
+ VW++AG+ F + +L Q +L +A M + EG
Sbjct: 125 KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAV-------EGYRV 177
Query: 178 GLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
E E ++P YPGG +PLGLA+D E K+KEIKNG + +
Sbjct: 178 AGEPLGEVVDPLYPGGS-FDPLGLAEDPEAFAELKVKEIKNGRLAM 222
>gi|373882292|gb|AEY78525.1| chlorophyll a/b-binding protein [Tagetes erecta]
Length = 265
Score = 80.5 bits (197), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 57/164 (34%), Positives = 82/164 (50%), Gaps = 14/164 (8%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR- 124
P YL G GD+G+D GL DPE+ + E++H+R+AM G G +F ++L G++
Sbjct: 66 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEVLSKNGVKF 125
Query: 125 ELPVWYEAGAVEFK-----FASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGL 179
VW++AG+ F + L Q +L +A M I EG G
Sbjct: 126 GEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWASQVVLMGLI-------EGYRVGG 178
Query: 180 EAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
EGL+ YPGG +PLGLA D E K+KE+KNG + +
Sbjct: 179 GPLGEGLDKIYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAM 221
>gi|255638199|gb|ACU19413.1| unknown [Glycine max]
Length = 156
Score = 80.5 bits (197), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 46/120 (38%), Positives = 65/120 (54%), Gaps = 4/120 (3%)
Query: 106 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 165
M G AGI + L G+ P WY AG +E+ F T TLFIV+L +G+AE +R+ D I
Sbjct: 1 MLGAAGIFIPEFLTKIGVLNTPSWYSAGELEY-FTDTTTLFIVELFFIGWAEGRRWADII 59
Query: 166 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAK-DIRNAREWKLKEIKNGLICLV 224
PG + F L G + GYPGG +PLG + ++ + KEIKNG + ++
Sbjct: 60 KPGCVNTDPIF--PNNKLTGTDVGYPGGLWFDPLGWGTGSPQKIKDLRTKEIKNGRLAML 117
>gi|226502967|ref|NP_001142284.1| uncharacterized protein LOC100274453 [Zea mays]
gi|194708004|gb|ACF88086.1| unknown [Zea mays]
gi|195613594|gb|ACG28627.1| chlorophyll a-b binding protein 2 [Zea mays]
gi|413950532|gb|AFW83181.1| light harvesting chlorophyll a/b binding protein1 isoform 1 [Zea
mays]
gi|413950533|gb|AFW83182.1| light harvesting chlorophyll a/b binding protein1 isoform 2 [Zea
mays]
Length = 264
Score = 80.5 bits (197), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 59/174 (33%), Positives = 83/174 (47%), Gaps = 32/174 (18%)
Query: 65 PPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR 124
PP YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G++
Sbjct: 64 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVK 123
Query: 125 -ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPGS 169
VW++AG+ F S ++ Q++LMG E R
Sbjct: 124 FGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRI-------- 175
Query: 170 QTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E ++P YPGG +PLGLA D E K+KEIKNG + +
Sbjct: 176 ---AGGPLG-----EVVDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAM 220
>gi|414881722|tpg|DAA58853.1| TPA: hypothetical protein ZEAMMB73_924562 [Zea mays]
Length = 259
Score = 80.5 bits (197), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 59/174 (33%), Positives = 83/174 (47%), Gaps = 32/174 (18%)
Query: 65 PPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR 124
PP YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G++
Sbjct: 59 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVK 118
Query: 125 -ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPGS 169
VW++AG+ F S ++ Q++LMG E R
Sbjct: 119 FGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVA------- 171
Query: 170 QTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E ++P YPGG +PLGLA D E K+KEIKNG + +
Sbjct: 172 ----GGPLG-----EVVDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAM 215
>gi|242088861|ref|XP_002440263.1| hypothetical protein SORBIDRAFT_09g028720 [Sorghum bicolor]
gi|241945548|gb|EES18693.1| hypothetical protein SORBIDRAFT_09g028720 [Sorghum bicolor]
Length = 265
Score = 80.5 bits (197), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 85/175 (48%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G+
Sbjct: 64 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGV 123
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 124 KFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRI------- 176
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E ++P YPGG +PLGLA D E K+KE+KNG + +
Sbjct: 177 ----AGGPLG-----EVVDPLYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAM 221
>gi|357152998|ref|XP_003576305.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
isoform 1 [Brachypodium distachyon]
gi|357153000|ref|XP_003576306.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
isoform 2 [Brachypodium distachyon]
gi|357153003|ref|XP_003576307.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
isoform 3 [Brachypodium distachyon]
Length = 266
Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 83/175 (47%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
PP YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 65 QPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 124
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 125 KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRI------- 177
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E ++P YPGG +PLGLA D E K+KE+KNG + +
Sbjct: 178 ----AGGPLG-----EVVDPLYPGGS-FDPLGLADDPEAFAELKVKEVKNGRLAM 222
>gi|296090224|emb|CBI40043.3| unnamed protein product [Vitis vinifera]
Length = 209
Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 62/192 (32%), Positives = 83/192 (43%), Gaps = 63/192 (32%)
Query: 43 TRRYLATVVRAQQRPTWLPGVDPP---------PYLDGTLAGDFGFDPLGLGEDPESLRW 93
+R+ + VVRA P G D P YLDG+L GD+GFDPLGL DPE
Sbjct: 31 SRKSSSFVVRAASTPPVKQGADRPLWFASKQSLTYLDGSLPGDYGFDPLGL-SDPEGTGG 89
Query: 94 YVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLM 153
+++ P W G V
Sbjct: 90 FIE------------------------------PRWLAYGEVI----------------- 102
Query: 154 GFAETKRYMDYISPGSQTKEGSFFGLEAALEGL-EPGYPGGPLLNPLGLAKDIRNAREWK 212
R+ D+ +PGS K+ F GLE L G +P YPGGPL NPLG KD ++ ++ K
Sbjct: 103 ----NGRFQDWANPGSMGKQ-YFLGLEKYLGGSGDPAYPGGPLFNPLGFGKDEKSLKDLK 157
Query: 213 LKEIKNGLICLV 224
LKE+KNG + ++
Sbjct: 158 LKEVKNGRLAML 169
>gi|115828|sp|P20865.1|CB2_DUNSA RecName: Full=Chlorophyll a-b binding protein of LHCII type I,
chloroplastic; Short=CAB; Short=LHCP; Flags: Precursor
gi|167987|gb|AAA33278.1| major chlorophyll binding protein [Dunaliella salina]
Length = 273
Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 59/173 (34%), Positives = 84/173 (48%), Gaps = 34/173 (19%)
Query: 71 GTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLL-RVTGIR--ELP 127
G GD+G+D GL DPE+ + Y + EL+HAR + G G++ +LL GI+ +
Sbjct: 78 GEFPGDYGWDTAGLSADPETFKRYRELELIHARCGLLGALGMVTPELLADEDGIKFGDAA 137
Query: 128 VWYEAGAVEFKFASTRTL--------------FIVQLLLMGFAETKRYMDYISPGSQTKE 173
+W++AGA F+ L VQ++LMG E R ++ G
Sbjct: 138 IWFKAGAAIFQDGGLNYLGNPSLIHAQNIVATLAVQVVLMGLVEGYR----VNGGP---- 189
Query: 174 GSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICLVLC 226
A EGL+P YP G +PLGLA D E K+KEIKNG + + C
Sbjct: 190 --------AGEGLDPLYP-GEAFDPLGLADDPDTFAELKVKEIKNGRLAMFAC 233
>gi|385298939|gb|AFI60242.1| light harvesting chlorophyll a/b binding protein, partial [Panicum
virgatum]
Length = 260
Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 85/175 (48%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G+
Sbjct: 59 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGV 118
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 119 KFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIA------ 172
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E ++P YPGG +PLGLA D E K+KE+KNG + +
Sbjct: 173 -----GGPLG-----EVVDPLYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAM 216
>gi|168006129|ref|XP_001755762.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162693081|gb|EDQ79435.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 265
Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 63/199 (31%), Positives = 92/199 (46%), Gaps = 34/199 (17%)
Query: 42 TTRRYLATVVRAQQRPTWLP--GVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAEL 99
T + ++ RP +L + P YL+G AGD+G+D GL DPE+ + E+
Sbjct: 40 TASKSSDSIWYGADRPKYLGPFSGETPSYLNGEFAGDYGWDTAGLSSDPETFARNRELEV 99
Query: 100 VHARFAMAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEF--------------KFASTRT 144
+HAR+AM G G + +LL G++ VW++AGA F S
Sbjct: 100 IHARWAMLGALGCVTPELLAKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILA 159
Query: 145 LFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKD 204
++ Q++LMG E R G G + +P YPGG +PLGLA D
Sbjct: 160 IWASQVILMGAVEGYRVA-----------GGPLG-----DVTDPIYPGGS-FDPLGLADD 202
Query: 205 IRNAREWKLKEIKNGLICL 223
E K+KEIKNG + +
Sbjct: 203 PDTFAELKVKEIKNGRLAM 221
>gi|2196774|gb|AAB61238.1| chlorophyll a/b-binding protein [Mesembryanthemum crystallinum]
Length = 267
Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 84/175 (48%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+ P YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 66 EAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 125
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AGA F S ++ Q++LMG E R
Sbjct: 126 KFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAIEGYRVA------ 179
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E ++P YPGG +PLGLA+D E K+KEIKNG + +
Sbjct: 180 -----GGPLG-----EVIDPLYPGGS-FDPLGLAEDPEAFAELKVKEIKNGRLAM 223
>gi|8925556|gb|AAF81519.1|AF268321_1 light-harvesting complex protein LHCG12 [Bigelowiella natans]
gi|145079012|tpg|DAA05893.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm7 [Bigelowiella natans]
Length = 346
Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 60/174 (34%), Positives = 85/174 (48%), Gaps = 33/174 (18%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLL-RVTGIR 124
P YL G GD+G+D GL DP + Y + E++HAR+AM G G + +LL + +G+
Sbjct: 146 PSYLTGEFPGDYGWDTQGLSADPNTFAAYRETEVIHARWAMLGALGCVTPELLAKYSGVP 205
Query: 125 -ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPGS 169
PVW++AG+ F S + Q++LMG AE R ++ G
Sbjct: 206 IAEPVWFKAGSQIFAEGGLDYLGNPSLVHAQSILAILACQVILMGGAEAYR----VNGGP 261
Query: 170 QTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
A EGL+ PGG +PLGLA D E K+KEIKNG + +
Sbjct: 262 ------------AGEGLDAINPGG-AFDPLGLADDPDTFAELKVKEIKNGRLAM 302
>gi|383867507|gb|AFH54999.1| LHC I type IV chlorophyll binding protein, partial [Juniperus
tibetica]
Length = 138
Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 48/121 (39%), Positives = 71/121 (58%), Gaps = 8/121 (6%)
Query: 99 LVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAET 158
LV+ R M GVAG+L ++L GI +P WY+AG VE+ FAS+ TLF+++ +L + E
Sbjct: 1 LVNGRVGMLGVAGMLIPEVLTSIGILNVPKWYDAGKVEY-FASSSTLFVIEFILFHYVEL 59
Query: 159 KRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKN 218
+R+ D PGS ++ F +L + GYPGG + NPL + + E K KE+ N
Sbjct: 60 RRWQDIKYPGSVNQDPIF--KSYSLPPNDVGYPGG-IFNPLNFSPSL----EAKEKELAN 112
Query: 219 G 219
G
Sbjct: 113 G 113
>gi|237510764|gb|ACQ99368.1| chloroplast light-harvesting chlorophyll-a/b binding protein
[Ankistrodesmus convolutus]
Length = 248
Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 62/177 (35%), Positives = 85/177 (48%), Gaps = 32/177 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
D P YL G GD+G+D GL DP + Y + EL+HAR+AM G G + +LL G
Sbjct: 44 DTPEYLTGEFPGDYGWDTAGLSADPATFARYREIELIHARWAMLGALGCVVPELLAKNGT 103
Query: 124 RELP---VWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYIS 166
LP VW++AGA F S Q+++MG AE+ R+
Sbjct: 104 -PLPDGGVWFKAGAAIFADDGLNYLGNPNLIHAQSILATLAFQVVVMGAAESFRF----- 157
Query: 167 PGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
+ G F LEG + YPG +P+GLA+D E K+KEIKNG + +
Sbjct: 158 --NGGAPGGF------LEGNDRLYPGD-QFDPMGLAEDPDTFAELKVKEIKNGRLAM 205
>gi|53627200|gb|AAU89251.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus ponderosa]
Length = 256
Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 82/175 (46%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 70 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 129
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AGA F S ++ Q++LMG E R
Sbjct: 130 KFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIA------ 183
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G +P YPGG +PLGLA D E K+KEIKNG + +
Sbjct: 184 -----GGPLGXVT-----DPIYPGGS-FDPLGLADDPDAFAELKVKEIKNGRLAM 227
>gi|351724927|ref|NP_001235283.1| chlorophyll a/b-binding protein [Glycine max]
gi|1053216|gb|AAA80688.1| chlorophyll a/b-binding protein [Glycine max]
Length = 263
Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 84/175 (48%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G+
Sbjct: 62 EPPSYLTGEFPGDYGWDTAGLSADPETFARNPELEVIHSRWAMLGALGCVFPELLSRNGV 121
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 122 KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIA------ 175
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E +P YPGG +PLGLA D E K+KE+KNG + +
Sbjct: 176 -----GGPLG-----EVTDPIYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAM 219
>gi|359806638|ref|NP_001241277.1| uncharacterized protein LOC100805310 [Glycine max]
gi|255647962|gb|ACU24438.1| unknown [Glycine max]
Length = 263
Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 84/175 (48%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G+
Sbjct: 62 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGV 121
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 122 KFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIA------ 175
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E +P YPGG +PLGLA D E K+KE+KNG + +
Sbjct: 176 -----GGPLG-----EVTDPIYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAM 219
>gi|115800|sp|P09756.1|CB23_SOYBN RecName: Full=Chlorophyll a-b binding protein 3, chloroplastic;
AltName: Full=LHCII type I CAB-3; Short=LHCP; Flags:
Precursor
gi|18552|emb|CAA31419.1| chlorophyll a/b binding preprotein (AA - 32 to 231) [Glycine max]
Length = 263
Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 84/175 (48%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G+
Sbjct: 62 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGV 121
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 122 KFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIA------ 175
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E +P YPGG +PLGLA D E K+KE+KNG + +
Sbjct: 176 -----GGPLG-----EVTDPIYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAM 219
>gi|255646685|gb|ACU23816.1| unknown [Glycine max]
Length = 263
Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 84/175 (48%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G+
Sbjct: 62 EPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLSRNGV 121
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 122 KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIA------ 175
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E +P YPGG +PLGLA D E K+KE+KNG + +
Sbjct: 176 -----GGPLG-----EVTDPIYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAM 219
>gi|159147191|gb|ABW90990.1| LHCB4 [Bambusa oldhamii]
Length = 287
Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 63/223 (28%), Positives = 91/223 (40%), Gaps = 78/223 (34%)
Query: 55 QRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRW--------------------- 93
RP W PG P YLDG+L GD+GFDP+GLG+ E L++
Sbjct: 50 DRPLWFPGAVAPEYLDGSLVGDYGFDPIGLGKPAEYLQYDLDSLDQNLAKNVAGDIIGTR 109
Query: 94 ----------------------YVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYE 131
+ + EL+H R+AM G L + L TG+ W +
Sbjct: 110 FEPGEVKSTPFQPYTEVFGLQRFRECELIHGRWAMLATLGALSVEWL--TGV----TWQD 163
Query: 132 AGAVEFKFAST----------RTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEA 181
AG VE + S+ TL +++LL+G+ E +R A
Sbjct: 164 AGKVELENGSSYLGQPLPFSMTTLIWIEVLLIGYIEFQR-------------------NA 204
Query: 182 ALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
L+ + YPGG +PLGLA D +L EIK+ + +V
Sbjct: 205 ELDPEKRLYPGGSYFDPLGLASDPEKKERLQLAEIKHARLAMV 247
Score = 37.4 bits (85), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 19/34 (55%)
Query: 79 FDPLGLGEDPESLRWYVQAELVHARFAMAGVAGI 112
FDPLGL DPE AE+ HAR AM G G
Sbjct: 219 FDPLGLASDPEKKERLQLAEIKHARLAMVGFLGF 252
>gi|115818|sp|P24006.1|CB2A_PYRPY RecName: Full=Chlorophyll a-b binding protein 1A, chloroplastic;
AltName: Full=LHCII type II CAB-1A; Short=LHCP; Flags:
Precursor
gi|218019|dbj|BAA00449.1| light harvesting a/b binding protein [Pyrus pyrifolia var. culta]
Length = 278
Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 84/175 (48%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G+
Sbjct: 77 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGV 136
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AGA F S ++ Q++LMG E R
Sbjct: 137 KFGEAVWFKAGAQIFSEGGLDYLGSPQLIHAQSILAIWACQVILMGAIEGYRV------- 189
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E +P YPGG +PLGLA D + K+KEIKNG + +
Sbjct: 190 ----AGGPLG-----EVTDPIYPGGN-FDPLGLADDPDAFADVKVKEIKNGRLAM 234
>gi|383867527|gb|AFH55009.1| LHC I type IV chlorophyll binding protein, partial [Juniperus
przewalskii]
gi|383867531|gb|AFH55011.1| LHC I type IV chlorophyll binding protein, partial [Juniperus
przewalskii]
Length = 138
Score = 80.1 bits (196), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 48/121 (39%), Positives = 71/121 (58%), Gaps = 8/121 (6%)
Query: 99 LVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAET 158
LV+ R M GVAG+L ++L GI +P WY+AG VE+ FAS+ TLF+++ +L + E
Sbjct: 1 LVNGRVGMLGVAGMLIPEVLTSIGILNVPKWYDAGKVEY-FASSSTLFVIEFILFHYVEL 59
Query: 159 KRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKN 218
+R+ D PGS ++ F +L + GYPGG + NPL + + E K KE+ N
Sbjct: 60 RRWQDIKYPGSVNQDPIF--KSYSLPPNDVGYPGG-IFNPLNFSPSL----EAKEKELAN 112
Query: 219 G 219
G
Sbjct: 113 G 113
>gi|32307464|gb|AAP79137.1| chlorophyll a/b-binding protein II 1 [Bigelowiella natans]
Length = 346
Score = 80.1 bits (196), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 60/174 (34%), Positives = 85/174 (48%), Gaps = 33/174 (18%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLL-RVTGIR 124
P YL G GD+G+D GL DP + Y + E++HAR+AM G G + +LL + +G+
Sbjct: 146 PSYLTGEFPGDYGWDTQGLSADPTTFAAYRETEVIHARWAMLGTLGCVTPELLAKYSGVP 205
Query: 125 -ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPGS 169
PVW++AG+ F S + Q++LMG AE R ++ G
Sbjct: 206 IAEPVWFKAGSQIFAEGGLDYLGNPSLVHAQSILAILACQVILMGGAEAYR----VNGGP 261
Query: 170 QTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
A EGL+ PGG +PLGLA D E K+KEIKNG + +
Sbjct: 262 ------------AGEGLDAINPGG-AFDPLGLADDPDTFAELKVKEIKNGRLAM 302
>gi|168003213|ref|XP_001754307.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162694409|gb|EDQ80757.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 267
Score = 80.1 bits (196), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 85/175 (48%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+ P YL+G AGD+G+D GL DPE+ + E++HAR+AM G G + +LL +G+
Sbjct: 66 ETPSYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCVTPELLAKSGV 125
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AGA F S ++ Q++LMG E R
Sbjct: 126 KFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWASQVILMGAVEGYRVA------ 179
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G + +P YPGG +PLGLA D E K+KEIKNG + +
Sbjct: 180 -----GGPLG-----DVTDPIYPGGS-FDPLGLADDPDTFAELKVKEIKNGRLAM 223
>gi|224284623|gb|ACN40044.1| unknown [Picea sitchensis]
Length = 278
Score = 80.1 bits (196), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 84/175 (48%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G+
Sbjct: 77 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGV 136
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AGA F S ++ Q++LMG E R
Sbjct: 137 KFGEAVWFKAGAQIFSEGWLDYLGSPNLVHAQSILAIWACQVILMGAIEGYRVA------ 190
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E +P YPGG +PLGLA D E K+KE+KNG + +
Sbjct: 191 -----GGPLG-----EVTDPIYPGGN-FDPLGLADDPDAFAELKVKELKNGRLAM 234
>gi|116782449|gb|ABK22510.1| unknown [Picea sitchensis]
gi|116782855|gb|ABK22691.1| unknown [Picea sitchensis]
gi|116791804|gb|ABK26115.1| unknown [Picea sitchensis]
gi|148908337|gb|ABR17282.1| unknown [Picea sitchensis]
Length = 278
Score = 80.1 bits (196), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 84/175 (48%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G+
Sbjct: 77 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGV 136
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AGA F S ++ Q++LMG E R
Sbjct: 137 KFGEAVWFKAGAQIFSEGGLDYLGSPNLVHAQSILAIWACQVILMGAIEGYRVA------ 190
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E +P YPGG +PLGLA D E K+KE+KNG + +
Sbjct: 191 -----GGPLG-----EVTDPIYPGGN-FDPLGLADDPDAFAELKVKELKNGRLAM 234
>gi|8925552|gb|AAF81517.1|AF268319_1 light-harvesting complex protein LHCG4 [Bigelowiella natans]
gi|145078979|tpg|DAA05891.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm2 [Bigelowiella natans]
Length = 345
Score = 80.1 bits (196), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 60/174 (34%), Positives = 85/174 (48%), Gaps = 33/174 (18%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLL-RVTGIR 124
P YL G GD+G+D GL DP + Y + E++HAR+AM G G + +LL + +G+
Sbjct: 145 PSYLTGEFPGDYGWDTQGLSADPTTFAAYRETEVIHARWAMLGTLGCVTPELLAKYSGVP 204
Query: 125 -ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPGS 169
PVW++AG+ F S + Q++LMG AE R ++ G
Sbjct: 205 IAEPVWFKAGSQIFAEGGLDYLGNPSLVHAQSILAILACQVILMGGAEAYR----VNGGP 260
Query: 170 QTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
A EGL+ PGG +PLGLA D E K+KEIKNG + +
Sbjct: 261 ------------AGEGLDAINPGG-AFDPLGLADDPDTFAELKVKEIKNGRLAM 301
>gi|115768|sp|P08221.1|CB21_CUCSA RecName: Full=Chlorophyll a-b binding protein of LHCII type I,
chloroplastic; Short=CAB; Short=LHCP; Flags: Precursor
gi|167523|gb|AAA33124.1| chlorophyll a/b-binding protein, partial [Cucumis sativus]
Length = 255
Score = 80.1 bits (196), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 84/175 (48%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G+
Sbjct: 54 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGV 113
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 114 KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIA------ 167
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E +P YPGG +PLGLA D E K+KE+KNG + +
Sbjct: 168 -----GGPLG-----EVTDPIYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAM 211
>gi|126362926|gb|ABO10493.1| light-harvesting chlorophyll a/b binding protein [Bambusa oldhamii]
Length = 263
Score = 80.1 bits (196), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 56/164 (34%), Positives = 82/164 (50%), Gaps = 14/164 (8%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR- 124
P YL G GD+G+D GL DPE+ + ++H+R+AM G G +F ++L G++
Sbjct: 64 PSYLTGEFPGDYGWDTAGLSADPETFARNRELGVIHSRWAMLGALGCVFPEILSKNGVKF 123
Query: 125 ELPVWYEAGAVEFK-----FASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGL 179
VW++AGA F + L Q +L +A M ++ EG G
Sbjct: 124 GEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWASQVVLMGFV-------EGYRIGG 176
Query: 180 EAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
EGL+ YPGG +PLGLA D E K+KE+KNG + +
Sbjct: 177 GPLGEGLDKVYPGG-AFDPLGLADDPDTFAELKVKELKNGRLAM 219
>gi|383867495|gb|AFH54993.1| LHC I type IV chlorophyll binding protein, partial [Juniperus
tibetica]
gi|383867497|gb|AFH54994.1| LHC I type IV chlorophyll binding protein, partial [Juniperus
tibetica]
gi|383867499|gb|AFH54995.1| LHC I type IV chlorophyll binding protein, partial [Juniperus
tibetica]
gi|383867501|gb|AFH54996.1| LHC I type IV chlorophyll binding protein, partial [Juniperus
tibetica]
gi|383867503|gb|AFH54997.1| LHC I type IV chlorophyll binding protein, partial [Juniperus
tibetica]
gi|383867505|gb|AFH54998.1| LHC I type IV chlorophyll binding protein, partial [Juniperus
tibetica]
gi|383867509|gb|AFH55000.1| LHC I type IV chlorophyll binding protein, partial [Juniperus
tibetica]
gi|383867511|gb|AFH55001.1| LHC I type IV chlorophyll binding protein, partial [Juniperus
tibetica]
gi|383867513|gb|AFH55002.1| LHC I type IV chlorophyll binding protein, partial [Juniperus
tibetica]
gi|383867515|gb|AFH55003.1| LHC I type IV chlorophyll binding protein, partial [Juniperus
tibetica]
gi|383867517|gb|AFH55004.1| LHC I type IV chlorophyll binding protein, partial [Juniperus
tibetica]
gi|383867519|gb|AFH55005.1| LHC I type IV chlorophyll binding protein, partial [Juniperus
convallium]
gi|383867521|gb|AFH55006.1| LHC I type IV chlorophyll binding protein, partial [Juniperus
convallium]
gi|383867525|gb|AFH55008.1| LHC I type IV chlorophyll binding protein, partial [Juniperus
przewalskii]
gi|383867529|gb|AFH55010.1| LHC I type IV chlorophyll binding protein, partial [Juniperus
przewalskii]
Length = 138
Score = 80.1 bits (196), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 48/121 (39%), Positives = 71/121 (58%), Gaps = 8/121 (6%)
Query: 99 LVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAET 158
LV+ R M GVAG+L ++L GI +P WY+AG VE+ FAS+ TLF+++ +L + E
Sbjct: 1 LVNGRVGMLGVAGMLIPEVLTSIGILNVPKWYDAGKVEY-FASSSTLFVIEFILFHYVEL 59
Query: 159 KRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKN 218
+R+ D PGS ++ F +L + GYPGG + NPL + + E K KE+ N
Sbjct: 60 RRWQDIKYPGSVNQDPIF--KSYSLPPNDVGYPGG-IFNPLNFSPSL----EAKEKELAN 112
Query: 219 G 219
G
Sbjct: 113 G 113
>gi|357496387|ref|XP_003618482.1| Chlorophyll a/b-binding protein [Medicago truncatula]
gi|355493497|gb|AES74700.1| Chlorophyll a/b-binding protein [Medicago truncatula]
Length = 265
Score = 80.1 bits (196), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 86/175 (49%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+ P YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G+
Sbjct: 64 EAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGV 123
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ VQ++LMG E R
Sbjct: 124 KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWAVQVILMGAVEGYRI------- 176
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E ++P YPGG +PLGLA+D E K+KE+KNG + +
Sbjct: 177 ----AGGPLG-----EVVDPLYPGGS-FDPLGLAEDPEAFAELKVKELKNGRLAM 221
>gi|449455992|ref|XP_004145734.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
[Cucumis sativus]
gi|449525484|ref|XP_004169747.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
[Cucumis sativus]
Length = 267
Score = 80.1 bits (196), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 84/175 (48%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G+
Sbjct: 66 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGV 125
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 126 KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIA------ 179
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E +P YPGG +PLGLA D E K+KE+KNG + +
Sbjct: 180 -----GGPLG-----EITDPIYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAM 223
>gi|388503040|gb|AFK39586.1| unknown [Medicago truncatula]
Length = 265
Score = 80.1 bits (196), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 86/175 (49%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+ P YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G+
Sbjct: 64 EAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGV 123
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ VQ++LMG E R PG
Sbjct: 124 KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWAVQVILMGAVEGYRIAGG-PPG 182
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
E ++P YPGG +PLGLA+D E K+KE+KNG + +
Sbjct: 183 ---------------EVVDPLYPGGS-FDPLGLAEDPEAFAELKVKELKNGRLAM 221
>gi|223974123|gb|ACN31249.1| unknown [Zea mays]
Length = 233
Score = 80.1 bits (196), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 85/175 (48%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G+
Sbjct: 32 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGV 91
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 92 KFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIA------ 145
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E ++P YPGG +PLGLA D E K+KE+KNG + +
Sbjct: 146 -----GGPLG-----EVVDPLYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAM 189
>gi|148514659|gb|ABQ81857.1| chloroplast chlorophyll a/b binding protein [Phyllostachys edulis]
Length = 265
Score = 80.1 bits (196), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 85/175 (48%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G+
Sbjct: 64 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGV 123
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 124 QFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIA------ 177
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E ++P YPGG +PLGLA D E K+KE+KNG + +
Sbjct: 178 -----GGPLG-----EVVDPLYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAM 221
>gi|110224742|emb|CAL07971.1| chlorophyll a/b-binding protein, photosystem II [Platanus x
acerifolia]
Length = 235
Score = 80.1 bits (196), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 83/175 (47%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 37 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLSRNGV 96
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AGA F S ++ Q++LMG E R ++ G
Sbjct: 97 KFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYR----VAGG 152
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
K P YPGG +PLGLA D E K+KEIKNG + +
Sbjct: 153 PLGKVTG------------PLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAM 194
>gi|115439621|ref|NP_001044090.1| Os01g0720500 [Oryza sativa Japonica Group]
gi|18461220|dbj|BAB84417.1| putative chlorophyll a/b-binding protein 3C precursor [Oryza sativa
Japonica Group]
gi|113533621|dbj|BAF06004.1| Os01g0720500 [Oryza sativa Japonica Group]
gi|125527527|gb|EAY75641.1| hypothetical protein OsI_03546 [Oryza sativa Indica Group]
gi|125571846|gb|EAZ13361.1| hypothetical protein OsJ_03282 [Oryza sativa Japonica Group]
gi|215678907|dbj|BAG96337.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215679047|dbj|BAG96477.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215764952|dbj|BAG86649.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 265
Score = 80.1 bits (196), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 84/175 (48%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 64 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 123
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 124 KFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWGCQVVLMGAVEGYRVA------ 177
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E ++P YPGG +PLGLA D E K+KEIKNG + +
Sbjct: 178 -----GGPLG-----EVVDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAM 221
>gi|3036955|dbj|BAA25396.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 267
Score = 80.1 bits (196), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 72/235 (30%), Positives = 105/235 (44%), Gaps = 46/235 (19%)
Query: 15 SSSSFICNDVNKSSIGITSAFLPAKSGTTRRYLATVVR--AQQRPTWLP---------GV 63
SSSSF+ V S +S+ + T R AT + + P + P
Sbjct: 9 SSSSFVGKAVKLSP---SSSEITGNGKVTMRKTATKAKPVSSGSPWYGPDRVKYLGPFSG 65
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+ P YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 66 ESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 125
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 126 KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVA------ 179
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E ++P YPGG +PLGLA+D E K+KEIKNG + +
Sbjct: 180 -----GGPLG-----EVVDPLYPGGS-FDPLGLAEDPEAFAELKVKEIKNGRLAM 223
>gi|7271945|gb|AAF44702.1|AF241524_1 chlorophyll a/b-binding protein type I [Asarina barclaiana]
Length = 169
Score = 80.1 bits (196), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 54/157 (34%), Positives = 78/157 (49%), Gaps = 27/157 (17%)
Query: 75 GDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVW--YEA 132
GDFGFDPLGLGE PE+L Y ++EL+H R+AM V GIL + L + W
Sbjct: 1 GDFGFDPLGLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGFGNWVKAQEWAAVPG 60
Query: 133 GAVEF-----KFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLE 187
G + + + T+ +++ L + F E +R M+ P +
Sbjct: 61 GQATYLGNPVPWGTLPTILVIEFLAIAFVEHQRSMEK-DPEKRK---------------- 103
Query: 188 PGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
YPGG +PLG +KD + E K+KEIKNG + L+
Sbjct: 104 --YPGG-AFDPLGYSKDPKKFEELKVKEIKNGRLALL 137
>gi|383867523|gb|AFH55007.1| LHC I type IV chlorophyll binding protein, partial [Juniperus
saltuaria]
Length = 138
Score = 80.1 bits (196), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 48/121 (39%), Positives = 71/121 (58%), Gaps = 8/121 (6%)
Query: 99 LVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAET 158
LV+ R M GVAG+L ++L GI +P WY+AG VE+ FAS+ TLF+++ +L + E
Sbjct: 1 LVNGRVGMLGVAGMLIPEVLTSIGILNVPKWYDAGKVEY-FASSSTLFVIEFILFHYVEL 59
Query: 159 KRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKN 218
+R+ D PGS ++ F +L + GYPGG + NPL + + E K KE+ N
Sbjct: 60 RRWQDIKYPGSVNQDPIF--KSYSLPPNDVGYPGG-IFNPLNFSPSL----EAKEKELAN 112
Query: 219 G 219
G
Sbjct: 113 G 113
>gi|167997791|ref|XP_001751602.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162697583|gb|EDQ83919.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 267
Score = 80.1 bits (196), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 67/205 (32%), Positives = 95/205 (46%), Gaps = 40/205 (19%)
Query: 42 TTRRYLATVVRAQ------QRPTWLP--GVDPPPYLDGTLAGDFGFDPLGLGEDPESLRW 93
T RR ++ R+ RP +L + P YL+G AGD+G+D GL D E+
Sbjct: 36 TMRRTVSKSARSDSIWYGADRPKFLGPFSGETPSYLNGEFAGDYGWDTAGLSSDLETFAR 95
Query: 94 YVQAELVHARFAMAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEF--------------K 138
+ E++HAR+AM G G L +LL +G++ VW++AGA F
Sbjct: 96 NRELEVIHARWAMLGALGCLTPELLAKSGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVH 155
Query: 139 FASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNP 198
S ++ Q++LMG E R G G E +P YPGG +P
Sbjct: 156 AQSILAIWACQVVLMGAVEGYRVA-----------GGPLG-----EVTDPIYPGGS-FDP 198
Query: 199 LGLAKDIRNAREWKLKEIKNGLICL 223
LGLA D E K+KEIKNG + +
Sbjct: 199 LGLADDPDTFAELKVKEIKNGRLAM 223
>gi|87313163|gb|ABD37878.1| light-harvesting chlorophyll-a/b binding protein Lhca1 [Mesostigma
viride]
gi|145079752|tpg|DAA05929.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca1 [Mesostigma viride]
Length = 225
Score = 80.1 bits (196), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 62/190 (32%), Positives = 93/190 (48%), Gaps = 36/190 (18%)
Query: 44 RRYLATVVRAQQRPTWLPG-VDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHA 102
++ + V +R W PG V P +LDG+L GDFG+DPLGL +DP SL Y +AE+++
Sbjct: 26 KKTDSRVTCMAERKLWAPGLVKAPAHLDGSLPGDFGYDPLGLAKDPVSLARYREAEVMNG 85
Query: 103 RFAMAGVAGILFTDLLRVTGIRELPVW--------YEAGAVEFKFASTRTLFIVQLLLMG 154
R+AM GVAG+L +L+ W Y + + F T+ V+ +
Sbjct: 86 RWAMLGVAGMLAPELVGQGTWLSAQDWAVTGGKPTYLGNELPYGFG---TVLAVEFFCLS 142
Query: 155 FAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLK 214
+ E R GLE + ++ YPGG +PLG KD N K+K
Sbjct: 143 WVEISR-----------------GLEK--DPMKRIYPGGA-FDPLGFGKDEVN----KVK 178
Query: 215 EIKNGLICLV 224
E++NG + +V
Sbjct: 179 ELRNGRLAMV 188
>gi|115778|sp|P13851.1|CB21_SINAL RecName: Full=Chlorophyll a-b binding protein 1, chloroplastic;
AltName: Full=LHCII type I CAB-1; Short=LHCP; Flags:
Precursor
gi|21138|emb|CAA34459.1| unnamed protein product [Sinapis alba]
gi|21140|emb|CAA33903.1| chlorophyll a/b-binding polypeptide [Sinapis alba]
Length = 266
Score = 80.1 bits (196), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 57/166 (34%), Positives = 81/166 (48%), Gaps = 13/166 (7%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 64 EPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPELLARNGV 123
Query: 124 R-ELPVWYEAGAVEFK-----FASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFF 177
+ VW++AG+ F + +L Q +L +A M + EG
Sbjct: 124 KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGEGPLG 183
Query: 178 GLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
E L YPGG +PLGLA D E K+KEIKNG + +
Sbjct: 184 EAEDLL------YPGGS-FDPLGLATDPEAFAELKVKEIKNGRLAM 222
>gi|357122377|ref|XP_003562892.1| PREDICTED: chlorophyll a-b binding protein CP29.2,
chloroplastic-like [Brachypodium distachyon]
Length = 288
Score = 80.1 bits (196), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 65/223 (29%), Positives = 91/223 (40%), Gaps = 78/223 (34%)
Query: 55 QRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGE-------DPES----------------- 90
RP W PG P YLDGTL GD+GFDP GLG+ DP+S
Sbjct: 53 DRPLWFPGAQAPEYLDGTLVGDYGFDPFGLGKPAEYLQYDPDSLDQNLAQNLAGEVIGTR 112
Query: 91 -------------------LRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYE 131
L+ + + EL+H R+AM G L + L TG+ W +
Sbjct: 113 FEDADIKSTPLQPYAEVFGLQRFRECELIHGRWAMLATLGALTVEWL--TGV----TWQD 166
Query: 132 AGAVEFKFAST----------RTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEA 181
AG VE S+ TL +++L++G+ E +R A
Sbjct: 167 AGKVELVDGSSYLGQPLPFTITTLIWIEVLVIGYIEFQR-------------------NA 207
Query: 182 ALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
L+ + YPGG +PLGLA D +L EIK+ + +V
Sbjct: 208 ELDPEKRLYPGGSYFDPLGLAADPEKKERLQLAEIKHARLAMV 250
Score = 37.0 bits (84), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 19/34 (55%)
Query: 79 FDPLGLGEDPESLRWYVQAELVHARFAMAGVAGI 112
FDPLGL DPE AE+ HAR AM G G
Sbjct: 222 FDPLGLAADPEKKERLQLAEIKHARLAMVGFLGF 255
>gi|449447521|ref|XP_004141516.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic-like
[Cucumis sativus]
gi|449510691|ref|XP_004163735.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic-like
[Cucumis sativus]
Length = 288
Score = 80.1 bits (196), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 58/172 (33%), Positives = 84/172 (48%), Gaps = 34/172 (19%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRE 125
P YL+G + GD+G+DP GL + PE Y EL+HAR+AM G AG + + G
Sbjct: 90 PEYLNGEVPGDYGYDPFGLSKKPEDFTKYQAFELIHARWAMLGAAGFIIPEAFNKFGANC 149
Query: 126 LP--VWYEAGAVEFKFASTRTLF------------IVQLLLMGFAETKRYMDYISPGSQT 171
P VW++ GA+ +T F I +++L+G AE R ++ ++
Sbjct: 150 GPEAVWFKTGALLLD-GNTLNYFGNNIPINLIVAVIAEVVLVGGAEYYRIINGLN----- 203
Query: 172 KEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
E L +PGGP +PLGLA D A K+KEIKNG + +
Sbjct: 204 -------FEDKL------HPGGP-FDPLGLADDPDQAAILKVKEIKNGRLAM 241
>gi|8925554|gb|AAF81518.1|AF268320_1 light-harvesting complex protein LHCG11 [Bigelowiella natans]
gi|145078995|tpg|DAA05892.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm3 [Bigelowiella natans]
Length = 333
Score = 80.1 bits (196), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 60/174 (34%), Positives = 85/174 (48%), Gaps = 33/174 (18%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLL-RVTGIR 124
P YL G GD+G+D GL DP + Y + E++HAR+AM G G + +LL + +G+
Sbjct: 133 PSYLTGEFPGDYGWDTQGLSADPNTFAAYRETEVIHARWAMLGALGCVTPELLAKYSGVP 192
Query: 125 -ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPGS 169
PVW++AG+ F S + Q++LMG AE R ++ G
Sbjct: 193 IAEPVWFKAGSQIFAEGGLDYLGNPSLVHAQSILAILACQVILMGGAEAYR----VNGGP 248
Query: 170 QTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
A EGL+ PGG +PLGLA D E K+KEIKNG + +
Sbjct: 249 ------------AGEGLDAINPGGA-FDPLGLADDPDTFAELKVKEIKNGRLAM 289
>gi|168019112|ref|XP_001762089.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162686806|gb|EDQ73193.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 263
Score = 80.1 bits (196), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 62/186 (33%), Positives = 88/186 (47%), Gaps = 34/186 (18%)
Query: 55 QRPTWLPGV--DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGI 112
RP +L + + P YL G AGD+G+D GL DPE+ + E++HAR+AM G G
Sbjct: 51 DRPKYLGPLSGETPSYLTGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGC 110
Query: 113 LFTDLLRVTGIR-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAE 157
+ +LL G++ VW++AG+ F S ++ Q++LMG E
Sbjct: 111 VTPELLAKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWASQVILMGAVE 170
Query: 158 TKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIK 217
R G G E +P YPGG +PLGLA D E K+KEIK
Sbjct: 171 GYRVA-----------GGPLG-----EVTDPIYPGGS-FDPLGLADDPDTFAELKVKEIK 213
Query: 218 NGLICL 223
NG + +
Sbjct: 214 NGRLAM 219
>gi|18266039|gb|AAL67432.1|AF458406_1 chlorophyll a/b binding protein [Brassica oleracea]
Length = 266
Score = 80.1 bits (196), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 57/166 (34%), Positives = 81/166 (48%), Gaps = 13/166 (7%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 64 EPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPELLARNGV 123
Query: 124 R-ELPVWYEAGAVEFK-----FASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFF 177
+ VW++AG+ F + +L Q +L +A M + EG
Sbjct: 124 KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGEGPLG 183
Query: 178 GLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
E L YPGG +PLGLA D E K+KEIKNG + +
Sbjct: 184 EAEDLL------YPGGS-FDPLGLAADPEAFAELKVKEIKNGRLAM 222
>gi|3036949|dbj|BAA25393.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 266
Score = 79.7 bits (195), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 84/175 (48%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+ P YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 65 ESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 124
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 125 KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVA------ 178
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E ++P YPGG +PLGLA+D E K+KEIKNG + +
Sbjct: 179 -----GGPLG-----EVVDPLYPGGS-FDPLGLAEDPEAFAELKVKEIKNGRLAM 222
>gi|413948509|gb|AFW81158.1| light harvesting chlorophyll a/b binding protein3 [Zea mays]
Length = 302
Score = 79.7 bits (195), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 58/174 (33%), Positives = 84/174 (48%), Gaps = 32/174 (18%)
Query: 65 PPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR 124
PP YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G++
Sbjct: 102 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVK 161
Query: 125 -ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPGS 169
VW++AG+ F S ++ Q++LMG E R
Sbjct: 162 FGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAIEGYRV-------- 213
Query: 170 QTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E ++P YPGG +PLGLA D E K+KE+KNG + +
Sbjct: 214 ---AGGPLG-----EVVDPLYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAM 258
>gi|18958|emb|CAA44777.1| Precursor of CP29, core chlorophyll a/b binding (CAB) protein of
photosystem II (PSII) [Hordeum vulgare subsp. vulgare]
gi|326511355|dbj|BAJ87691.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|445122|prf||1908428A chlorophyll a/b-binding protein
Length = 286
Score = 79.7 bits (195), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 54/160 (33%), Positives = 81/160 (50%), Gaps = 10/160 (6%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRE 125
P YL+G + GD+G+DP GLG+ PE Y EL+HAR+AM G AG + + L G
Sbjct: 88 PEYLNGEVPGDYGYDPFGLGKKPEDFAKYQAFELIHARWAMLGAAGFIIPEALNKFGANC 147
Query: 126 LP--VWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAAL 183
P VW++ GA+ +T F + + + ++ ++ + L
Sbjct: 148 GPEAVWFKTGALLLD-GNTLNYFGNSIPI------NLILAVVAEVVLVGGAEYYRITNGL 200
Query: 184 EGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
E + +PGGP +PLGLA D A K+KEIKNG + +
Sbjct: 201 EFDDKLHPGGP-FDPLGLATDPDQAALLKVKEIKNGRLAM 239
>gi|3036944|dbj|BAA25389.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 265
Score = 79.7 bits (195), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 84/175 (48%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+ P YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 64 ESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 123
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 124 KFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVILMGAVEGYRVA------ 177
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E ++P YPGG +PLGLA+D E K+KEIKNG + +
Sbjct: 178 -----GGPLG-----EVVDPLYPGGS-FDPLGLAEDPEAFAELKVKEIKNGRLAM 221
>gi|194703220|gb|ACF85694.1| unknown [Zea mays]
gi|195616570|gb|ACG30115.1| chlorophyll a-b binding protein 1 [Zea mays]
gi|195623468|gb|ACG33564.1| chlorophyll a-b binding protein 1 [Zea mays]
gi|413948507|gb|AFW81156.1| light harvesting chlorophyll a/b binding protein3 isoform 1 [Zea
mays]
gi|413948508|gb|AFW81157.1| light harvesting chlorophyll a/b binding protein3 isoform 2 [Zea
mays]
Length = 265
Score = 79.7 bits (195), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 58/174 (33%), Positives = 84/174 (48%), Gaps = 32/174 (18%)
Query: 65 PPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR 124
PP YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G++
Sbjct: 65 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVK 124
Query: 125 -ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPGS 169
VW++AG+ F S ++ Q++LMG E R
Sbjct: 125 FGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAIEGYRV-------- 176
Query: 170 QTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E ++P YPGG +PLGLA D E K+KE+KNG + +
Sbjct: 177 ---AGGPLG-----EVVDPLYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAM 221
>gi|398599|emb|CAA52750.1| chlorophyll a/b binding protein [Amaranthus hypochondriacus]
Length = 264
Score = 79.7 bits (195), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 57/164 (34%), Positives = 83/164 (50%), Gaps = 14/164 (8%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR- 124
P YL G GD+G+D GL DPE+ + E++H+R+AM G G +F ++L G++
Sbjct: 65 PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNGVKF 124
Query: 125 ELPVWYEAGAVEFK-----FASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGL 179
VW++AG+ F+ + L Q +L +A M I EG G
Sbjct: 125 GEAVWFKAGSQIFQEGGLDYLGNPNLIHAQSILAIWACQVVLMGLI-------EGYRVGG 177
Query: 180 EAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
EGL+ YPGG +PLGLA D E K+KE+KNG + +
Sbjct: 178 GPLGEGLDKIYPGGA-FDPLGLADDPDAFAELKVKELKNGRLAM 220
>gi|302810440|ref|XP_002986911.1| light-harvesting complex [Selaginella moellendorffii]
gi|300145316|gb|EFJ11993.1| light-harvesting complex [Selaginella moellendorffii]
Length = 267
Score = 79.7 bits (195), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 58/164 (35%), Positives = 82/164 (50%), Gaps = 14/164 (8%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR- 124
P YL G GD+G+D GL DPE+ + E++H+R+AM G G + +LL GI+
Sbjct: 68 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVTPELLAKNGIKF 127
Query: 125 ELPVWYEAGAVEFK-----FASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGL 179
VW++AG+ FK + L Q +L +A M + EG G
Sbjct: 128 GEAVWFKAGSQIFKEGGLDYLGNPNLVHAQSILAIWASQVILMGAV-------EGYRVGG 180
Query: 180 EAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
EGL+ YPGG +PLGLA D E K+KE+KNG + +
Sbjct: 181 GPLGEGLDKIYPGG-AFDPLGLADDPDTFAELKVKELKNGRLAM 223
>gi|357468737|ref|XP_003604653.1| Chlorophyll a-b binding protein [Medicago truncatula]
gi|355505708|gb|AES86850.1| Chlorophyll a-b binding protein [Medicago truncatula]
Length = 347
Score = 79.7 bits (195), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 62/225 (27%), Positives = 90/225 (40%), Gaps = 78/225 (34%)
Query: 53 AQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRW------------------- 93
+ RP W PG P +LDG+L GD+GFDP GLG+ E L++
Sbjct: 109 STDRPLWFPGAKSPEWLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLAGDVIG 168
Query: 94 ------------------------YVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVW 129
+ + EL+H R+AM G L + L TG+ W
Sbjct: 169 TRTEFADVKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGALTVEWL--TGV----TW 222
Query: 130 YEAGAVEFKFAST----------RTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGL 179
+AG VE ST TL +++L++G+ E +R
Sbjct: 223 QDAGKVELVEGSTYLGQPLPFSITTLIWIEVLVIGYIEFQR------------------- 263
Query: 180 EAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
A L+ + YPGG +PLGLA D +L EIK+ + +V
Sbjct: 264 NAELDSEKRLYPGGKFFDPLGLASDPEKKATLQLAEIKHARLAMV 308
>gi|3036948|dbj|BAA25392.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 267
Score = 79.7 bits (195), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 84/175 (48%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+ P YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 66 ESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 125
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 126 KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVA------ 179
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E ++P YPGG +PLGLA+D E K+KEIKNG + +
Sbjct: 180 -----GGPLG-----EVVDPLYPGGS-FDPLGLAEDPEAFAELKVKEIKNGRLAM 223
>gi|115805|sp|P27495.1|CB24_TOBAC RecName: Full=Chlorophyll a-b binding protein 40, chloroplastic;
AltName: Full=LHCII type I CAB-40; Short=LHCP; Flags:
Precursor
gi|19829|emb|CAA36958.1| unnamed protein product [Nicotiana tabacum]
Length = 267
Score = 79.7 bits (195), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 84/175 (48%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+ P YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 66 ESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 125
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 126 KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVA------ 179
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E ++P YPGG +PLGLA+D E K+KEIKNG + +
Sbjct: 180 -----GGPLG-----EVVDPLYPGGS-FDPLGLAEDPEAFAELKVKEIKNGRLAM 223
>gi|302767620|ref|XP_002967230.1| light-harvesting complex [Selaginella moellendorffii]
gi|300165221|gb|EFJ31829.1| light-harvesting complex [Selaginella moellendorffii]
Length = 263
Score = 79.7 bits (195), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 85/175 (48%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+ P YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL GI
Sbjct: 62 ESPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSKNGI 121
Query: 124 R-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ FK S ++ Q++LMG E R
Sbjct: 122 KFGEAVWFKAGSQIFKEGGLDYLGNPSLVHAQSILAIWASQVILMGAVEGYRIA------ 175
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E +P YPGG +PLGLA+D E K+KE+KNG + +
Sbjct: 176 -----GGPLG-----EVTDPIYPGGS-FDPLGLAEDPEAFAELKVKELKNGRLAM 219
>gi|225459918|ref|XP_002264295.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic
[Vitis vinifera]
gi|147770824|emb|CAN76428.1| hypothetical protein VITISV_023565 [Vitis vinifera]
gi|297734735|emb|CBI16969.3| unnamed protein product [Vitis vinifera]
Length = 290
Score = 79.7 bits (195), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 58/172 (33%), Positives = 83/172 (48%), Gaps = 34/172 (19%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRE 125
P YL G + GD+G+DP GL + PE Y EL+HAR+AM G AG + + G
Sbjct: 92 PAYLTGEVPGDYGYDPFGLSKKPEDFAKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 151
Query: 126 LP--VWYEAGAVEFKFASTRTLF------------IVQLLLMGFAETKRYMDYISPGSQT 171
P VW++ GA+ +T F + +++L+G AE R ++ +
Sbjct: 152 GPEAVWFKTGALLLD-GNTLNYFGKNIPINLIFAVVAEVVLVGGAEYYRIINGLD----- 205
Query: 172 KEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
LE L +PGGP +PLGLA D A K+KEIKNG + +
Sbjct: 206 -------LEDKL------HPGGP-FDPLGLANDPDQAALLKVKEIKNGRLAM 243
>gi|3036946|dbj|BAA25391.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 265
Score = 79.7 bits (195), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 84/175 (48%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+ P YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 64 EAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 123
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 124 KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVA------ 177
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E ++P YPGG +PLGLA+D E K+KEIKNG + +
Sbjct: 178 -----GGPLG-----EVVDPLYPGGS-FDPLGLAEDPEAFAELKVKEIKNGRLAM 221
>gi|56809379|gb|AAW31511.1| light-harvesting chlorophyll-a/b binding protein Lhcb1 [Pisum
sativum]
Length = 266
Score = 79.7 bits (195), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 57/175 (32%), Positives = 85/175 (48%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+ P YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G+
Sbjct: 65 ESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGV 124
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 125 KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIA------ 178
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E ++P YPGG +PLGLA+D E K+KE+KNG + +
Sbjct: 179 -----GGPLG-----EVVDPLYPGGS-FDPLGLAEDPEAFAELKVKELKNGRLAM 222
>gi|556367|gb|AAA50310.1| light-harvesting chlorophyll a/b-binding protein [Prunus persica]
Length = 267
Score = 79.7 bits (195), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 84/175 (48%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+ P YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G+
Sbjct: 66 EAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGV 125
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AGA F S ++ Q++LMG E R
Sbjct: 126 KFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVA------ 179
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E +P YPGG +PLGLA+D E K+KE+KNG + +
Sbjct: 180 -----GGPLG-----EITDPLYPGGS-FDPLGLAEDPEAFAELKVKELKNGRLAM 223
>gi|693916|gb|AAA80591.1| chlorophyll a/b binding protein [Solanum tuberosum]
Length = 265
Score = 79.7 bits (195), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 84/175 (48%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+ P YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 64 ESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLSRNGV 123
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 124 KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIA------ 177
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E ++P YPGG +PLGLA+D E K+KEIKNG + +
Sbjct: 178 -----GGPLG-----EVVDPLYPGGS-FDPLGLAEDPEAFAELKVKEIKNGRLAM 221
>gi|302849410|ref|XP_002956235.1| hypothetical protein VOLCADRAFT_66679 [Volvox carteri f.
nagariensis]
gi|300258538|gb|EFJ42774.1| hypothetical protein VOLCADRAFT_66679 [Volvox carteri f.
nagariensis]
Length = 276
Score = 79.7 bits (195), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 60/184 (32%), Positives = 88/184 (47%), Gaps = 46/184 (25%)
Query: 68 YLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIREL- 126
+L+G AGD GFDPL LG+DP + + + EL+HAR+AM G G + +LL + G+ EL
Sbjct: 72 HLNGEEAGDAGFDPLELGKDPGAFARFREVELLHARWAMLGFVGCMVPELLALRGV-ELG 130
Query: 127 -PVWYEAGAVE--------------FKFASTRTLFIV---QLLLMGFAETKRYMDYIS-- 166
PVW++ GA + F+ A + + ++ Q +LMG E RY+ S
Sbjct: 131 EPVWWKVGASKLNSDLTLNWGGIEGFRIAGKQGIGLIAACQAVLMGGPEYARYVGIRSLE 190
Query: 167 ------PGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGL 220
PG Q YPGG +PL A D + ++EIKNG
Sbjct: 191 PVGVFLPGDQN------------------YPGGGPFDPLNYAADADGFVDQAVREIKNGR 232
Query: 221 ICLV 224
+ +V
Sbjct: 233 LAMV 236
>gi|2196772|gb|AAB61237.1| chlorophyll a/b-binding protein [Mesembryanthemum crystallinum]
Length = 267
Score = 79.7 bits (195), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 83/175 (47%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+ P YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 66 ESPSYLTGEFPGDYGWDTAGLSADPETFTKNRELEVIHCRWAMLGALGCVFPELLARNGV 125
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AGA F S ++ Q++LMG E R
Sbjct: 126 KFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAIEGYRVA------ 179
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E +P YPGG +PLGLA+D E K+KEIKNG + +
Sbjct: 180 -----GGPLG-----EVTDPLYPGGS-FDPLGLAEDPEAFAELKVKEIKNGRLAM 223
>gi|2407314|gb|AAB70556.1| chlorophyll a/b binding protein [Tetraselmis sp. RG-15]
Length = 251
Score = 79.7 bits (195), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 70/212 (33%), Positives = 92/212 (43%), Gaps = 41/212 (19%)
Query: 36 LPAKSGTTRRYLATVVRAQ------QRPTWLP--GVDPPPYLDGTLAGDFGFDPLGLGED 87
+ + G + R V RA R WL D P YL G GD+G+D GL D
Sbjct: 13 VAGQVGASARGQKQVTRAAVEFYGPDRAKWLGPFSDDTPSYLTGEFPGDYGWDTAGLSAD 72
Query: 88 PESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIREL--PVWYEAGAVEF-------- 137
PE+ Y + EL+HAR+AM G G + +LL E VW++AGA F
Sbjct: 73 PETFASYRELELIHARWAMLGALGCVTPELLSKYAGVEFGEAVWFKAGAQIFADGGLDYL 132
Query: 138 ------KFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYP 191
S + Q++LMG AE R G G E L+ +P
Sbjct: 133 GNSSLVHAQSILAILGCQVVLMGGAEAFRV-----------NGGPLG-----EDLDKLHP 176
Query: 192 GGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
GG +PLGLA D E K+KEIKNG + +
Sbjct: 177 GGA-FDPLGLADDPDTFSELKVKEIKNGRLAM 207
>gi|224284929|gb|ACN40194.1| unknown [Picea sitchensis]
Length = 274
Score = 79.7 bits (195), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 84/175 (48%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP +L G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G+
Sbjct: 73 EPPSHLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGV 132
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AGA F S ++ Q++LMG E R
Sbjct: 133 KFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIA------ 186
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E +P YPGG +PLGLA D E K+KE+KNG + +
Sbjct: 187 -----GGPLG-----EITDPIYPGGS-FDPLGLADDPDAFAELKVKELKNGRLAM 230
>gi|289920|gb|AAA18529.1| chlorophyll A/B binding protein [Gossypium hirsutum]
Length = 264
Score = 79.7 bits (195), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 82/175 (46%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 63 EPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPELLARNGV 122
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 123 KFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVILMGAVEGYRIA------ 176
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E +P YPGG +PLG A D E K+KEIKNG + +
Sbjct: 177 -----GGPLG-----EVTDPLYPGGS-FDPLGFADDPEAFAELKVKEIKNGRLAM 220
>gi|302754140|ref|XP_002960494.1| light-harvesting complex [Selaginella moellendorffii]
gi|300171433|gb|EFJ38033.1| light-harvesting complex [Selaginella moellendorffii]
Length = 272
Score = 79.7 bits (195), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 57/166 (34%), Positives = 84/166 (50%), Gaps = 14/166 (8%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+ P YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL GI
Sbjct: 71 ESPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSKNGI 130
Query: 124 R-ELPVWYEAGAVEFK-----FASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFF 177
+ VW++AG+ FK + +L Q +L +A M + EG
Sbjct: 131 KFGEAVWFKAGSQIFKEGGLDYLGNPSLVHAQSILAIWASQVILMGAV-------EGYRI 183
Query: 178 GLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
E +P YPGG +PLGLA+D E K+KE+KNG + +
Sbjct: 184 AGGPLGEVTDPIYPGGS-FDPLGLAEDPEAFAELKVKELKNGRLAM 228
>gi|47026843|gb|AAT08647.1| chloroplast chlorophyll A-B binding protein 3C [Hyacinthus
orientalis]
Length = 220
Score = 79.7 bits (195), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 60/175 (34%), Positives = 83/175 (47%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+ P YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 22 EAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 81
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AGA F S ++ Q+LLMG E R
Sbjct: 82 KFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWATQVLLMGAVEGYRVA------ 135
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E ++P YPGG +PLGLA D E K+KEIKNG + +
Sbjct: 136 -----GGPLG-----EVVDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAM 179
>gi|115795|sp|P12469.1|CB23_NICPL RecName: Full=Chlorophyll a-b binding protein C, chloroplastic;
AltName: Full=LHCII type I CAB-C; Short=LHCP; Flags:
Precursor
gi|170210|gb|AAA34055.1| chlorophyll a/b-binding protein-C [Nicotiana plumbaginifolia]
Length = 267
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 56/166 (33%), Positives = 83/166 (50%), Gaps = 14/166 (8%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+ P YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 66 ESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 125
Query: 124 R-ELPVWYEAGAVEFK-----FASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFF 177
+ VW++ G+ F + +L Q +L +A M + EG
Sbjct: 126 KFGEAVWFKGGSQIFSQGGLDYLGNPSLVHAQSILAIWACQVVLMGAV-------EGYRV 178
Query: 178 GLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
E E ++P YPGG +PLGLA+D E K+KEIKNG + +
Sbjct: 179 AGEPLGEVVDPLYPGGS-FDPLGLAEDPEAFAELKVKEIKNGRLAM 223
>gi|115781|sp|P27492.1|CB21_TOBAC RecName: Full=Chlorophyll a-b binding protein 16, chloroplastic;
AltName: Full=LHCII type I CAB-16; Short=LHCP; Flags:
Precursor
gi|19819|emb|CAA36955.1| unnamed protein product [Nicotiana tabacum]
Length = 266
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 84/175 (48%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+ P YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 65 ESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 124
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 125 KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVA------ 178
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E ++P YPGG +PLGLA+D E K+KEIKNG + +
Sbjct: 179 -----GGPLG-----EVVDPLYPGGS-FDPLGLAEDPEAFAELKVKEIKNGRLAM 222
>gi|693922|gb|AAA80594.1| chlorophyll a/b binding protein [Solanum tuberosum]
Length = 265
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 86/176 (48%), Gaps = 34/176 (19%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+ P YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 64 ESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 123
Query: 124 R--ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISP 167
+ E+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 124 KFGEV-VWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIA----- 177
Query: 168 GSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E ++P YPGG +PLGLA+D E K+KEIKNG + +
Sbjct: 178 ------GGPLG-----EVVDPLYPGGS-FDPLGLAEDPEAFAELKVKEIKNGRLAM 221
>gi|115792|sp|P27493.1|CB22_TOBAC RecName: Full=Chlorophyll a-b binding protein 21, chloroplastic;
AltName: Full=LHCII type I CAB-21; Short=LHCP; Flags:
Precursor
gi|19823|emb|CAA36957.1| unnamed protein product [Nicotiana tabacum]
Length = 265
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 84/175 (48%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+ P YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 64 ESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 123
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 124 KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVA------ 177
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E ++P YPGG +PLGLA+D E K+KEIKNG + +
Sbjct: 178 -----GGPLG-----EVVDPLYPGGS-FDPLGLAEDPEAFAELKVKEIKNGRLAM 221
>gi|2570513|gb|AAB82142.1| chlorophyll a-b binding protein [Oryza sativa Indica Group]
Length = 263
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 57/173 (32%), Positives = 82/173 (47%), Gaps = 32/173 (18%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR- 124
P YL G GD+G+D GL DPE+ + E++H+R+AM G G F ++L G+
Sbjct: 64 PSYLTGKFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCFFPEILSKNGVNF 123
Query: 125 ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPGSQ 170
VW++AGA F + S ++ VQ++LMGF E R
Sbjct: 124 GEAVWFKAGAQIFSEGGLDYLGNPALVRPQSILAIWAVQVVLMGFVEGYR---------- 173
Query: 171 TKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G EGL+ YPGG + LGLA+D E+K+KE NG + +
Sbjct: 174 ------VGGGPLGEGLDKVYPGG-AFDHLGLAEDPDTFAEFKVKEFNNGRLAM 219
>gi|224927|prf||1204205B protein 1B,chlorophyll binding
Length = 265
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 84/175 (48%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+ P YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 64 ESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 123
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 124 KFGEAVWFKAGSQIFSQGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIA------ 177
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E ++P YPGG +PLGLA+D E K+KEIKNG + +
Sbjct: 178 -----GGPLG-----EVVDPLYPGGS-FDPLGLAEDPEAFAELKVKEIKNGRLAM 221
>gi|226502080|ref|NP_001147639.1| chlorophyll a-b binding protein 1, chloroplastic precursor [Zea
mays]
gi|195612774|gb|ACG28217.1| chlorophyll a-b binding protein 2 [Zea mays]
Length = 262
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 57/175 (32%), Positives = 85/175 (48%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DP++ + E++H+R+AM G G +F +LL G+
Sbjct: 61 EPPSYLTGEFPGDYGWDTAGLSADPKTFAKNRELEVIHSRWAMLGALGCVFPELLSRNGV 120
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 121 KFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRI------- 173
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E ++P YPGG +PLGLA D E K+KE+KNG + +
Sbjct: 174 ----AGGPLG-----EVVDPLYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAM 218
>gi|4512125|gb|AAD21625.1| putative chlorophyll a/b-binding protein [Phalaenopsis hybrid
cultivar]
Length = 277
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 84/175 (48%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G+
Sbjct: 76 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCIFPELLARNGV 135
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ VQ++LMG E R
Sbjct: 136 KFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAVQVVLMGAVEGYRIA------ 189
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E +P YPG +PLGLA D E K+KE+KNG + +
Sbjct: 190 -----GGPLG-----EITDPLYPGNS-FDPLGLADDPEAFAELKVKELKNGRLAM 233
>gi|133917263|emb|CAJ77391.1| major chlorophyll a/b binding protein LHCb1.1 [Spinacia oleracea]
gi|283549607|emb|CAX64457.1| major chlorophyll a/b binding protein LHCb1.1 precursor [Spinacia
oleracea]
Length = 267
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 84/175 (48%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+ P YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 66 EAPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHCRWAMLGALGCVFPELLARNGV 125
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 126 KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVA------ 179
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E ++P YPGG +PLGLA+D E K+KEIKNG + +
Sbjct: 180 -----GGPLG-----EVVDPLYPGGS-FDPLGLAEDPEAFAELKVKEIKNGRLAM 223
>gi|384253340|gb|EIE26815.1| major light-harvesting complex II protein m10 [Coccomyxa
subellipsoidea C-169]
Length = 250
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 60/178 (33%), Positives = 84/178 (47%), Gaps = 32/178 (17%)
Query: 61 PGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRV 120
P P YL+G GD+G+D GL DPE+ Y + E++HAR+AM G G + +LL
Sbjct: 47 PFTKSPSYLNGEYPGDYGWDTAGLSADPETFARYREIEVIHARWAMLGALGCVTPELLAK 106
Query: 121 TGIR-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYI 165
G+ VW++AG+ F S + Q+LLMG E R +
Sbjct: 107 NGVSFGEAVWWKAGSQIFAPGGLDYLGNPSLIHAQSIIAIVFSQVLLMGLIEGYR----V 162
Query: 166 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
+ G A EGL+ YP G +PLGLA D E ++KEIKNG + +
Sbjct: 163 NGGP------------AGEGLDALYP-GEAFDPLGLADDPDTFAELRVKEIKNGRLAM 207
>gi|115819|sp|P07370.1|CB2B_SOLLC RecName: Full=Chlorophyll a-b binding protein 1B, chloroplastic;
AltName: Full=LHCII type I CAB-1B; Short=LHCP; Flags:
Precursor
gi|170402|gb|AAA34147.1| chlorophyll a/b-binding protein Cab-1B [Solanum lycopersicum]
Length = 265
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 84/175 (48%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+ P YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 64 ESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 123
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 124 KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIA------ 177
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E ++P YPGG +PLGLA+D E K+KEIKNG + +
Sbjct: 178 -----GGPLG-----EVVDPLYPGGS-FDPLGLAEDPEAFAELKVKEIKNGRLAM 221
>gi|115814|sp|P27490.1|CB28_PEA RecName: Full=Chlorophyll a-b binding protein 8, chloroplastic;
AltName: Full=LHCII type I CAB-8; Flags: Precursor
gi|20669|emb|CAA39883.1| chlorophyll a/b binding protein [Pisum sativum]
Length = 268
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 57/175 (32%), Positives = 84/175 (48%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+ P YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G+
Sbjct: 67 ESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGV 126
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 127 KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIA------ 180
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E ++P YPGG +PLGLA D E K+KE+KNG + +
Sbjct: 181 -----GGPLG-----EVVDPLYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAM 224
>gi|115798|sp|P04781.1|CB23_PETSP RecName: Full=Chlorophyll a-b binding protein 22R, chloroplastic;
AltName: Full=LHCII type I CAB-22R; Short=LHCP; Flags:
Precursor
gi|20479|emb|CAA26213.1| unnamed protein product [Petunia sp.]
Length = 267
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 74/237 (31%), Positives = 103/237 (43%), Gaps = 50/237 (21%)
Query: 15 SSSSFICNDVNKSSIGITSAFLPAKSGTTRRYLATVVRAQQRPTWLPGVDP--------- 65
SSSSF V SS +S+ + T R TV +A+ + P P
Sbjct: 9 SSSSFAGKAVKLSS---SSSEITGNGKVTMR--KTVTKAKPASSSSPWYGPDRVKYLGPF 63
Query: 66 ----PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVT 121
P YL G D+G+D GL DPE+ + E++H R+AM G G +F +L
Sbjct: 64 SGEAPSYLTGEFPSDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFARN 123
Query: 122 GIR-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYIS 166
GI+ VW++AGA F S ++ Q++LMG E R
Sbjct: 124 GIKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVA---- 179
Query: 167 PGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E ++P YPGG +PLGLA+D E K+KEIKNG + +
Sbjct: 180 -------GGPLG-----EVIDPLYPGGS-FDPLGLAEDPEAFAELKVKEIKNGRLAM 223
>gi|397789256|gb|AFO67217.1| putative chlorophyll a/b binding protein [Aralia elata]
Length = 265
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 56/164 (34%), Positives = 82/164 (50%), Gaps = 14/164 (8%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR- 124
P YL G GD+G+D GL DPE+ + E++H+R+AM G G +F ++L G++
Sbjct: 66 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILAKNGVKF 125
Query: 125 ELPVWYEAGAVEFK-----FASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGL 179
VW++AGA F + L Q +L +A M ++ EG G
Sbjct: 126 GEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWASQVVLMGFV-------EGYRVGG 178
Query: 180 EAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
GL+ YPGG +PLGLA D E K+KE+KNG + +
Sbjct: 179 GPLGWGLDKIYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAM 221
>gi|283549609|emb|CAX64458.1| major chlorophyll a/b binding protein LHCb1.4 precursor [Spinacia
oleracea]
Length = 267
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 83/175 (47%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+ P YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 66 EAPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHCRWAMLGALGCVFPELLARNGV 125
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 126 KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIA------ 179
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E ++P YPGG +PLGLA D E K+KEIKNG + +
Sbjct: 180 -----GGPLG-----EVVDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAM 223
>gi|2196770|gb|AAB61236.1| chlorophyll a/b-binding protein [Mesembryanthemum crystallinum]
Length = 267
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 83/175 (47%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+ P YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 66 ESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 125
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AGA F S ++ Q++LMG E R
Sbjct: 126 KFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAIEGYRVA------ 179
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E +P YPGG +PLGLA+D E K+KEIKNG + +
Sbjct: 180 -----GGPLG-----EVTDPLYPGGS-FDPLGLAEDPEAFAELKVKEIKNGRLAM 223
>gi|115804|sp|P04782.1|CB24_PETSP RecName: Full=Chlorophyll a-b binding protein 25, chloroplastic;
AltName: Full=LHCII type I CAB-25; Short=LHCP; Flags:
Precursor
gi|20483|emb|CAA26211.1| unnamed protein product [Petunia sp.]
Length = 266
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 73/237 (30%), Positives = 102/237 (43%), Gaps = 51/237 (21%)
Query: 15 SSSSFICNDVNKSSIGITSAFLPAKSGTTRRYLATVVRAQQRPTWLPGVDP--------- 65
SSSSF VN S +S T R+ TV +A+ + P P
Sbjct: 9 SSSSFAGKAVNVPS---SSQITGNGKATMRK---TVTKAKPVSSGSPWYGPDRVKYLGPF 62
Query: 66 ----PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVT 121
P YL G GD+G+D GL DPE+ + E++H R+AM G G +F +L
Sbjct: 63 SGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFARN 122
Query: 122 GIR-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYIS 166
G++ VW++AG+ F S ++ Q++LMG E R
Sbjct: 123 GVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVA---- 178
Query: 167 PGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E ++P YPGG +PLGLA D E K+KEIKNG + +
Sbjct: 179 -------GGPLG-----EVIDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAM 222
>gi|255087238|ref|XP_002505542.1| chlorophyll a/b-binding protein CP26, chloroplast precursor
[Micromonas sp. RCC299]
gi|226520812|gb|ACO66800.1| chlorophyll a/b-binding protein CP26, chloroplast precursor
[Micromonas sp. RCC299]
Length = 308
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 61/170 (35%), Positives = 87/170 (51%), Gaps = 17/170 (10%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
D P YLDG+LAGD+GFDPL LG+D + Y AE++HAR+AM + GI+ + L + G
Sbjct: 103 DVPSYLDGSLAGDYGFDPLQLGKD-GKVEQYRAAEVIHARWAMLAIPGIVIPEALGIPG- 160
Query: 124 RELPVWYEAGAVEFKFASTRTLFI--------VQLLLMGFAETKRYMDYISP-GSQTKEG 174
VW E G V + R + +Q+ L E R +P G +G
Sbjct: 161 ---GVWTETGKVFLDGEAGRPEILQNPYLFAAIQIGLFAAVEGYRAGKAPAPDGFVPFKG 217
Query: 175 SFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
F G + GL+P PGGP L+ +A + K+KEIKNG + ++
Sbjct: 218 KFSGSD--FSGLDPINPGGP-LDFFNVAATPDDLAVLKVKEIKNGRLAMI 264
>gi|157786302|gb|ABN49454.2| chloroplast chlorophyll a/b binding protein [Pisum sativum]
Length = 266
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 57/175 (32%), Positives = 84/175 (48%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+ P YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G+
Sbjct: 65 ESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGV 124
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 125 KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIA------ 178
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E ++P YPGG +PLGLA D E K+KE+KNG + +
Sbjct: 179 -----GGPLG-----EVVDPLYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAM 222
>gi|384251912|gb|EIE25389.1| putative chlorophyll a/b-binding protein [Coccomyxa subellipsoidea
C-169]
Length = 287
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 61/188 (32%), Positives = 92/188 (48%), Gaps = 25/188 (13%)
Query: 54 QQRPTWLP--GVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAG 111
++RP WL D P YL G GD+ +DPL L +D + Y + EL+HAR+AM G G
Sbjct: 71 EERPKWLGPLSYDYPAYLRGGAPGDYAYDPLQLAQDQDKFDQYFEFELLHARWAMLGALG 130
Query: 112 ILFTDLLRVTGIREL--PVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGS 169
++L+ +G+ + W+ G + + L + L + G I+ +
Sbjct: 131 AGIPEILQYSGVSDFLEARWWAVGGAKLQGEDLNYLGVSGLRIAG-------GQGIAIIA 183
Query: 170 QTKEGSFFGLEAA----LEGLEP---------GYPGGPLLNPLGLAKDIRNAREWKLKEI 216
+ FG E A +E LEP YPGG L +PLGL+KD + + ++KEI
Sbjct: 184 ICQVLLMFGPEYARACGIEALEPLGLYLPGDKNYPGG-LFDPLGLSKDPASFADLQVKEI 242
Query: 217 KNGLICLV 224
KNG + LV
Sbjct: 243 KNGRLALV 250
>gi|217072728|gb|ACJ84724.1| unknown [Medicago truncatula]
gi|388501002|gb|AFK38567.1| unknown [Medicago truncatula]
Length = 289
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 62/225 (27%), Positives = 90/225 (40%), Gaps = 78/225 (34%)
Query: 53 AQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRW------------------- 93
+ RP W PG P +LDG+L GD+GFDP GLG+ E L++
Sbjct: 51 STDRPLWFPGAKSPEWLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLAGDVIG 110
Query: 94 ------------------------YVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVW 129
+ + EL+H R+AM G L + L TG+ W
Sbjct: 111 TRTEFADVKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGALTVEWL--TGV----TW 164
Query: 130 YEAGAVEFKFAST----------RTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGL 179
+AG VE ST TL +++L++G+ E +R
Sbjct: 165 QDAGKVELVEGSTYLGQPLPFSITTLIWIEVLVIGYIEFQR------------------- 205
Query: 180 EAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
A L+ + YPGG +PLGLA D +L EIK+ + +V
Sbjct: 206 NAELDSEKRLYPGGKFFDPLGLASDPEKKATLQLAEIKHARLAMV 250
>gi|115825|sp|P07369.1|CB2G_SOLLC RecName: Full=Chlorophyll a-b binding protein 3C, chloroplastic;
AltName: Full=LHCII type I CAB-3C; Short=LHCP; Flags:
Precursor
gi|224932|prf||1204205G protein 3C,chlorophyll binding
Length = 267
Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 83/175 (47%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+ P YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 66 ESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 125
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 126 KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIA------ 179
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E ++P YPGG +PLGLA D E K+KEIKNG + +
Sbjct: 180 -----GGPLG-----EVVDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAM 223
>gi|217944|dbj|BAA03104.1| light-harvesting chlorophyll a/b-binding protein (LHCP) precursor
[Lactuca sativa]
Length = 266
Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 83/175 (47%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+ P YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 65 EAPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHCRWAMLGALGCVFPELLARNGV 124
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 125 KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIA------ 178
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E ++P YPGG +PLGLA D E K+KEIKNG + +
Sbjct: 179 -----GGPLG-----EVVDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAM 222
>gi|445116|prf||1908421A light-harvesting complex IIa protein
Length = 286
Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 64/223 (28%), Positives = 88/223 (39%), Gaps = 78/223 (34%)
Query: 55 QRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYV------------------- 95
RP W PG P YLDGTL GD+GFDP GLG+ E L++ V
Sbjct: 50 DRPLWFPGAQAPEYLDGTLVGDYGFDPFGLGKPAEYLQYDVDSLDQNLAQNLAGEIIGTR 109
Query: 96 ------------------------QAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYE 131
+ EL+H R+AM G L + L TG+ W +
Sbjct: 110 FEDADVKSTPFQPYAEVFGLQRFRECELIHGRWAMLATLGALTVEWL--TGV----TWQD 163
Query: 132 AGAVEFKFAST----------RTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEA 181
AG VE S+ TL +++L++G+ E +R A
Sbjct: 164 AGKVELVDGSSYLGQPLPFTITTLIWIEVLVIGYIEFQR-------------------NA 204
Query: 182 ALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
L+ YPGG +PLGLA D +L EIK+ + +V
Sbjct: 205 ELDPERRLYPGGSYFDPLGLAADPEKKETLQLAEIKHARLAMV 247
>gi|3036951|dbj|BAA25394.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 267
Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 83/175 (47%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+ P YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 66 NSPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 125
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 126 KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVA------ 179
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E ++P YPGG +PLGLA D E K+KEIKNG + +
Sbjct: 180 -----GGPLG-----EVVDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAM 223
>gi|3036945|dbj|BAA25390.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 265
Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 83/175 (47%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+ P YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 64 ESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 123
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 124 KFGEAVWFKAGSQIFSDGGLDYLGNPSLIHAQSILAIWACQVILMGAVEGYRVA------ 177
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E ++P YPGG +PLGLA D E K+KEIKNG + +
Sbjct: 178 -----GGPLG-----EVVDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAM 221
>gi|693920|gb|AAA80593.1| chlorophyll a/b binding protein [Solanum tuberosum]
Length = 265
Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 83/175 (47%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+ P YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 64 ESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 123
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 124 KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIA------ 177
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E ++P YPGG +PLGLA D E K+KEIKNG + +
Sbjct: 178 -----GGPLG-----EVIDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAM 221
>gi|693918|gb|AAA80592.1| chlorophyll a/b binding protein [Solanum tuberosum]
Length = 265
Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 83/175 (47%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+ P YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 64 ESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 123
Query: 124 R-ELPVWYEAGAVEFK--------------FASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F+ S ++ Q++LMG E R
Sbjct: 124 KFGEAVWFKAGSQIFREGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIA------ 177
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E + P YPGG +PLGLA D E K+KEIKNG + +
Sbjct: 178 -----GGPLG-----EVVNPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAM 221
>gi|115780|sp|P12333.1|CB2A_SPIOL RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCII type I CAB; Short=LHCP; Flags:
Precursor
gi|14240|emb|CAA32526.1| chlorophyll a/b binding protein precursor [Spinacia oleracea]
gi|193783447|emb|CAJ77389.3| major chlorophyll a/b binding protein LHCb1.3 [Spinacia oleracea]
Length = 267
Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 83/175 (47%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+ P YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 66 ESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 125
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 126 KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIA------ 179
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E ++P YPGG +PLGLA D E K+KEIKNG + +
Sbjct: 180 -----GGPLG-----EVVDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAM 223
>gi|146403796|gb|ABQ32304.1| chloroplast light-harvesting chlorophyll a/b-binding protein
[Artemisia annua]
Length = 254
Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 84/175 (48%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+ P YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G+
Sbjct: 53 EAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGV 112
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AGA F S ++ Q++LMG E R
Sbjct: 113 KFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIA------ 166
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E ++P YPGG +PLGLA D E K+KE+KNG + +
Sbjct: 167 -----GGPLG-----EVVDPLYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAM 210
>gi|224063529|ref|XP_002301189.1| light-harvesting complex I protein Lhca5 [Populus trichocarpa]
gi|222842915|gb|EEE80462.1| light-harvesting complex I protein Lhca5 [Populus trichocarpa]
Length = 55
Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/41 (92%), Positives = 39/41 (95%), Gaps = 1/41 (2%)
Query: 50 VVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPES 90
VV AQQRPTWLPG+DPPPYL GTLAGDFGFDPLGLGEDPES
Sbjct: 14 VVHAQQRPTWLPGLDPPPYL-GTLAGDFGFDPLGLGEDPES 53
>gi|5714656|gb|AAD48017.1|AF165529_1 chlorophyll a/b binding protein [Rumex palustris]
Length = 264
Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 57/173 (32%), Positives = 82/173 (47%), Gaps = 32/173 (18%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR- 124
P YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G++
Sbjct: 65 PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLSKNGVQF 124
Query: 125 ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPGSQ 170
VW++AG+ F S ++ Q++LMGF E R
Sbjct: 125 GEAVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMGFVEGYR---------- 174
Query: 171 TKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G E L+ YPGG +PLGLA D E K+KE+KNG + +
Sbjct: 175 ------VGGGPLGEDLDKLYPGG-AFDPLGLADDPEAFAELKVKELKNGRLAM 220
>gi|162463409|ref|NP_001105545.1| chlorophyll a-b binding protein M9, chloroplastic precursor [Zea
mays]
gi|115815|sp|P27497.1|CB29_MAIZE RecName: Full=Chlorophyll a-b binding protein M9, chloroplastic;
AltName: Full=LHCII type I CAB-M9; Short=LHCP; Flags:
Precursor
gi|22355|emb|CAA39376.1| light-harvesting chlorophyll a/b binding protein [Zea mays]
Length = 265
Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 57/175 (32%), Positives = 85/175 (48%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G+
Sbjct: 64 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGV 123
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 124 KFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAIEGYRV------- 176
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E ++P YPGG +PLGLA D + K+KE+KNG + +
Sbjct: 177 ----AGGPLG-----EVVDPLYPGG-TFDPLGLADDPEAFADVKVKELKNGRLAM 221
>gi|133917261|emb|CAJ77390.1| major chlorophyll a/b binding protein LHCb1.2 [Spinacia oleracea]
Length = 267
Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 83/175 (47%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+ P YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 66 EAPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHCRWAMLGALGCVFPELLARNGV 125
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 126 KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIA------ 179
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E ++P YPGG +PLGLA D E K+KEIKNG + +
Sbjct: 180 -----GGPLG-----EVVDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAM 223
>gi|356559931|ref|XP_003548249.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic-like
[Glycine max]
Length = 289
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 58/172 (33%), Positives = 82/172 (47%), Gaps = 34/172 (19%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRE 125
P YL G + GD+G+DP GL + PE Y EL+HAR+AM G AG + + G
Sbjct: 91 PEYLTGEVPGDYGYDPFGLSKKPEDFSKYQAFELIHARWAMLGAAGFIIPEAFNKYGANC 150
Query: 126 LP--VWYEAGAVEFKFASTRTLF------------IVQLLLMGFAETKRYMDYISPGSQT 171
P VW++ GA+ T F I +++L+G AE R ++ ++
Sbjct: 151 GPEAVWFKTGALLLD-GGTLNYFGKPIPINLIVAVIAEIVLVGGAEYYRIINGLN----- 204
Query: 172 KEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
E L +PGGP +PLGLA D A K+KEIKNG + +
Sbjct: 205 -------FEDKL------HPGGP-FDPLGLANDPDQAALLKVKEIKNGRLAM 242
>gi|224127848|ref|XP_002329192.1| light-harvesting complex II protein Lhcb5 [Populus trichocarpa]
gi|118487642|gb|ABK95646.1| unknown [Populus trichocarpa]
gi|222870973|gb|EEF08104.1| light-harvesting complex II protein Lhcb5 [Populus trichocarpa]
Length = 290
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 57/172 (33%), Positives = 83/172 (48%), Gaps = 34/172 (19%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRE 125
P YL G + GD+G+DP GL + P+ Y EL+HAR+AM G AG + + G
Sbjct: 92 PEYLTGEVPGDYGYDPFGLSKKPDDFEKYQAFELIHARWAMLGAAGFIIPEAFNKFGANC 151
Query: 126 LP--VWYEAGAVEFKFASTRTLF------------IVQLLLMGFAETKRYMDYISPGSQT 171
P VW++ GA+ +T F + +++L+G AE R + +
Sbjct: 152 GPEAVWFKTGALLLD-GNTLNYFGKNIPINLVLAVVAEVILVGGAEYFRITNGL------ 204
Query: 172 KEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G + L +PGGP +PLGLAKD A K+KEIKNG + +
Sbjct: 205 ------GFDDKL------HPGGP-FDPLGLAKDPDQAALLKVKEIKNGRLAM 243
>gi|6446570|dbj|BAA78595.1| hypothetical protein [Chlamydomonas sp. HS-5]
Length = 222
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 70/203 (34%), Positives = 90/203 (44%), Gaps = 42/203 (20%)
Query: 44 RRYLATVVRAQQ-----RPTWLP--GVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQ 96
R + + RA + R WL D P YL G GD+G+D GL DPE+ Y +
Sbjct: 20 ERSTSVIARAVEFYGPDRAKWLGPFSDDTPSYLTGEFPGDYGWDTAGLSADPETFARYRE 79
Query: 97 AELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEF--------------KFAST 142
E++HAR+AM G G + +L + G PVW++AGA F S
Sbjct: 80 IEVIHARWAMLGALGCITPEL--IGGDIAEPVWFKAGAQIFSEGGLDYLGNPSLVHAQSI 137
Query: 143 RTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPL--LNPLG 200
VQ++LMG AE R Y+ PG G L+ L PG PL L P
Sbjct: 138 IATLAVQVILMGQAEAFRAAGYVVPG---------GFGEDLDNLYPGDAFDPLAWLIPDT 188
Query: 201 LAKDIRNAREWKLKEIKNG-LIC 222
A E K+KEIKNG L C
Sbjct: 189 FA-------ELKVKEIKNGRLAC 204
>gi|160713961|gb|ABX47016.1| chloroplast chlorophyll a/b binding protein cab-PhE7 [Phyllostachys
edulis]
Length = 287
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 63/223 (28%), Positives = 89/223 (39%), Gaps = 78/223 (34%)
Query: 55 QRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRW--------------------- 93
RP W PG P YLDG+L GD+GFDP GLG+ E L++
Sbjct: 50 DRPLWFPGAVAPDYLDGSLVGDYGFDPFGLGKPAEYLQFELDSLDQNLAKNDAGDIIGTR 109
Query: 94 ----------------------YVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYE 131
+ + EL+H R+AM G L + L TG+ W +
Sbjct: 110 FEPGEVKSTPFQPYTEVFGLQRFRECELIHGRWAMLATLGALSVEWL--TGV----TWQD 163
Query: 132 AGAVEFKFAST----------RTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEA 181
AG VE S+ TL +++LL+G+ E +R A
Sbjct: 164 AGKVELVDGSSYLGQPLPFSMTTLIWIEVLLIGYIEFQR-------------------NA 204
Query: 182 ALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
L+ + YPGG +PLGLA D +L EIK+ + +V
Sbjct: 205 ELDSEKRLYPGGSYFDPLGLASDPEKKERLQLAEIKHARLAMV 247
Score = 37.4 bits (85), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 19/34 (55%)
Query: 79 FDPLGLGEDPESLRWYVQAELVHARFAMAGVAGI 112
FDPLGL DPE AE+ HAR AM G G
Sbjct: 219 FDPLGLASDPEKKERLQLAEIKHARLAMVGFLGF 252
>gi|116785086|gb|ABK23587.1| unknown [Picea sitchensis]
Length = 303
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 57/175 (32%), Positives = 84/175 (48%), Gaps = 34/175 (19%)
Query: 63 VDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTG 122
D P YL+G + GD+G+DP GL + PE+ Y EL+HAR+AM G AG + + G
Sbjct: 102 ADIPEYLNGEVPGDYGYDPFGLSKKPENFDKYQAYELIHARWAMLGAAGFIIPEAFNKFG 161
Query: 123 IRELP--VWYEAGAVEFKFASTRTLF------------IVQLLLMGFAETKRYMDYISPG 168
P VW++ GA+ T + F + +++L+G AE R +
Sbjct: 162 AYCGPEAVWFKTGALLLD-GGTLSYFGASIHINLIAAVVAEVILVGGAEYYRATN----- 215
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
L+ + +PGGP +PLGLAKD K+KEIKNG + +
Sbjct: 216 -------------GLDFEDKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAM 256
>gi|693914|gb|AAA80589.1| chlorophyll a/b binding protein [Solanum tuberosum]
Length = 265
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 83/175 (47%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+ P YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 64 ESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 123
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 124 KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIA------ 177
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E ++P YPGG +PLGLA D E K+KEIKNG + +
Sbjct: 178 -----GGPLG-----EVVDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAM 221
>gi|224285421|gb|ACN40433.1| unknown [Picea sitchensis]
Length = 303
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 57/175 (32%), Positives = 84/175 (48%), Gaps = 34/175 (19%)
Query: 63 VDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTG 122
D P YL+G + GD+G+DP GL + PE+ Y EL+HAR+AM G AG + + G
Sbjct: 102 ADIPEYLNGEVPGDYGYDPFGLSKKPENFDKYQAYELIHARWAMLGAAGFIMPEAFNKFG 161
Query: 123 IRELP--VWYEAGAVEFKFASTRTLF------------IVQLLLMGFAETKRYMDYISPG 168
P VW++ GA+ T + F + +++L+G AE R +
Sbjct: 162 AYCGPEAVWFKTGALLLD-GGTLSYFGASIPINLIAAVVAEVILVGGAEYYRATN----- 215
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
L+ + +PGGP +PLGLAKD K+KEIKNG + +
Sbjct: 216 -------------GLDFEDKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAM 256
>gi|115788|sp|P07371.1|CB22_PEA RecName: Full=Chlorophyll a-b binding protein AB80, chloroplastic;
AltName: Full=LHCII type I CAB-AB80; Short=LHCP; Flags:
Precursor
gi|169053|gb|AAA63413.1| cab precursor [Pisum sativum]
gi|169055|gb|AAA33651.1| polypeptide 15 precursor [Pisum sativum]
gi|223990|prf||1006296A protein,chlorophyll a/b binding
Length = 269
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 57/175 (32%), Positives = 84/175 (48%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+ P YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G+
Sbjct: 68 ESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGV 127
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 128 KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIA------ 181
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E ++P YPGG +PLGLA D E K+KE+KNG + +
Sbjct: 182 -----GGPLG-----EVVDPLYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAM 225
>gi|346987811|gb|AEO51756.1| chloroplast chlorophyll A/B binding protein [Dimocarpus longan]
Length = 286
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 63/225 (28%), Positives = 90/225 (40%), Gaps = 78/225 (34%)
Query: 53 AQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRW------------------- 93
+ RP W PG P YLDG+L GD+GFDP GLG+ E L++
Sbjct: 49 SADRPLWYPGAKAPEYLDGSLVGDYGFDPFGLGKPVEYLQYDLDSLDQNLAKNMAGDIIG 108
Query: 94 ------------------------YVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVW 129
+ + EL+H R+AM G L + L TG+ W
Sbjct: 109 TRVESSEVKSTPFQPYTEVFGLQRFRECELIHGRWAMLATLGALSVEWL--TGV----TW 162
Query: 130 YEAGAVEFKFAST----------RTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGL 179
+AG VE S+ TL +++LL+G+ E +R
Sbjct: 163 QDAGKVELVEGSSYLGQPLPFSISTLIWIEVLLIGYIEFQR------------------- 203
Query: 180 EAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
A L+ + YPGG +PLGLA D +L EIK+ + +V
Sbjct: 204 NAELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMV 248
Score = 37.7 bits (86), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 79 FDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVW 129
FDPLGL DPE AE+ HAR AM G G F VTG L W
Sbjct: 220 FDPLGLAADPEKKATLQLAEIKHARLAMVGFLG--FAVQAAVTGKGPLNNW 268
>gi|312281599|dbj|BAJ33665.1| unnamed protein product [Thellungiella halophila]
Length = 288
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 61/223 (27%), Positives = 90/223 (40%), Gaps = 78/223 (34%)
Query: 55 QRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRW--------------------- 93
RP W PG P +LDG+L GD+GFDP GLG+ E L++
Sbjct: 51 DRPLWFPGAKSPDWLDGSLVGDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNLAGDVIGTR 110
Query: 94 ----------------------YVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYE 131
+ + EL+H R+AM G L + L TG+ W +
Sbjct: 111 TEEAAPKSTPFQPYSEVFGIQRFRECELIHGRWAMLATLGALSVEWL--TGV----TWQD 164
Query: 132 AGAVEFKFAST----------RTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEA 181
AG VE S+ TL +++L++G+ E +R A
Sbjct: 165 AGKVELVDGSSYLGQPLPFSISTLIWIEVLVIGYIEFQR-------------------NA 205
Query: 182 ALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
L+ + YPGG +PLGLA D + +L EIK+ + +V
Sbjct: 206 ELDSEKRLYPGGKFFDPLGLASDPEKTAQLQLAEIKHARLAMV 248
>gi|116779208|gb|ABK21181.1| unknown [Picea sitchensis]
gi|116780325|gb|ABK21632.1| unknown [Picea sitchensis]
gi|116781512|gb|ABK22131.1| unknown [Picea sitchensis]
gi|116791342|gb|ABK25943.1| unknown [Picea sitchensis]
gi|116791754|gb|ABK26096.1| unknown [Picea sitchensis]
gi|148907198|gb|ABR16740.1| unknown [Picea sitchensis]
gi|224284432|gb|ACN39950.1| unknown [Picea sitchensis]
gi|224284582|gb|ACN40024.1| unknown [Picea sitchensis]
gi|224284686|gb|ACN40075.1| unknown [Picea sitchensis]
Length = 303
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 57/175 (32%), Positives = 84/175 (48%), Gaps = 34/175 (19%)
Query: 63 VDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTG 122
D P YL+G + GD+G+DP GL + PE+ Y EL+HAR+AM G AG + + G
Sbjct: 102 ADIPEYLNGEVPGDYGYDPFGLSKKPENFDKYQAYELIHARWAMLGAAGFIIPEAFNKFG 161
Query: 123 IRELP--VWYEAGAVEFKFASTRTLF------------IVQLLLMGFAETKRYMDYISPG 168
P VW++ GA+ T + F + +++L+G AE R +
Sbjct: 162 AYCGPEAVWFKTGALLLD-GGTLSYFGASIPINLIAAVVAEVILVGGAEYYRATN----- 215
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
L+ + +PGGP +PLGLAKD K+KEIKNG + +
Sbjct: 216 -------------GLDFEDKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAM 256
>gi|53627208|gb|AAU89255.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus roxburghii]
Length = 256
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 82/175 (46%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 70 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 129
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AGA F S ++ Q++LMG E R
Sbjct: 130 KFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIA------ 183
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E +P YPGG +PL LA D E K+KEIKNG + +
Sbjct: 184 -----GGPLG-----EVTDPIYPGGS-FDPLRLADDPDAFAELKVKEIKNGRLAM 227
>gi|317454924|gb|ADV19258.1| chlorophyll a/b-binding protein-like protein [Helleborus
orientalis]
Length = 232
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 57/166 (34%), Positives = 83/166 (50%), Gaps = 14/166 (8%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+ P YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 31 EAPSYLSGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLSRNGV 90
Query: 124 R-ELPVWYEAGAVEFK-----FASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFF 177
+ VW++AGA F + +L Q +L +A M + G + G
Sbjct: 91 KFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVE-GYRIAGGPLG 149
Query: 178 GLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
+E +P YPGG +PLGLA D E K+KEIKNG + +
Sbjct: 150 EVE------DPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAM 188
>gi|2645999|gb|AAB87573.1| chlorophyll a/b binding protein of LHCII type I precursor [Panax
ginseng]
Length = 266
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 57/175 (32%), Positives = 85/175 (48%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+ P YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G+
Sbjct: 65 EAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGV 124
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 125 KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIA------ 178
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E ++P YPGG +PLGLA+D E K+KE+KNG + +
Sbjct: 179 -----GGPLG-----EVVDPLYPGGS-FDPLGLAEDPEAFAELKVKELKNGRLAM 222
>gi|356503628|ref|XP_003520609.1| PREDICTED: chlorophyll a-b binding protein CP29.2,
chloroplastic-like [Glycine max]
Length = 290
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 63/226 (27%), Positives = 90/226 (39%), Gaps = 78/226 (34%)
Query: 52 RAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRW------------------ 93
R RP W PG P YLDG+L GD+GFDP GLG+ E L++
Sbjct: 50 RDTDRPLWYPGAKAPEYLDGSLVGDYGFDPFGLGKPAEYLQFELDSLDQNLAKNVAGDII 109
Query: 94 -------------------------YVQAELVHARFAMAGVAGILFTDLLRVTGIRELPV 128
+ + EL+H R+AM G L + L TG+
Sbjct: 110 GTRTELADVKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGALTVEWL--TGV----T 163
Query: 129 WYEAGAVEFKFAST----------RTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFG 178
W +AG VE S+ TL +++L++G+ E +R
Sbjct: 164 WQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQR------------------ 205
Query: 179 LEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
A L+ + YPGG +PLGLA D +L EIK+ + +V
Sbjct: 206 -NAELDPEKRLYPGGSYFDPLGLASDPEKKATLQLAEIKHARLAMV 250
Score = 36.6 bits (83), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 19/34 (55%)
Query: 79 FDPLGLGEDPESLRWYVQAELVHARFAMAGVAGI 112
FDPLGL DPE AE+ HAR AM G G
Sbjct: 222 FDPLGLASDPEKKATLQLAEIKHARLAMVGFLGF 255
>gi|115794|sp|P27489.1|CB23_SOLLC RecName: Full=Chlorophyll a-b binding protein 13, chloroplastic;
AltName: Full=LHCII type III CAB-13; Flags: Precursor
gi|19277|emb|CAA42818.1| LHCII type III [Solanum lycopersicum]
Length = 265
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 58/174 (33%), Positives = 82/174 (47%), Gaps = 32/174 (18%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLR--VTGI 123
P YL+G GD+G+D GL DPE+ E++H R+AM G G +F ++L V
Sbjct: 64 PSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCIFPEVLEKWVKVD 123
Query: 124 RELPVWYEAGAVEF-----------KFASTRTLFIV---QLLLMGFAETKRYMDYISPGS 169
+ PVW++AG+ F +++ V Q++LMG E R
Sbjct: 124 FKEPVWFKAGSQIFSDGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRIN------- 176
Query: 170 QTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
GL EG + YPGG +PLGLA D E K+KEIKNG + +
Sbjct: 177 --------GLPGVGEGNDL-YPGGQYFDPLGLADDPTTFAELKVKEIKNGRLAM 221
>gi|219879136|gb|ACL50948.1| putative chloroplast chlorophyll a/b binding protein [Solanum
nigrum]
Length = 249
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 83/175 (47%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+ P YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 48 ESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 107
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 108 KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIA------ 161
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E ++P YPGG +PLGLA D E K+KEIKNG + +
Sbjct: 162 -----GGPLG-----EVVDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAM 205
>gi|356530963|ref|XP_003534048.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic-like
[Glycine max]
Length = 291
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 58/172 (33%), Positives = 82/172 (47%), Gaps = 34/172 (19%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRE 125
P YL G + GD+G+DP GL + PE Y EL+HAR+AM G AG + + G
Sbjct: 93 PEYLTGEVPGDYGYDPFGLSKKPEDFAKYQAFELIHARWAMLGAAGFIIPEAFNKYGANC 152
Query: 126 LP--VWYEAGAVEFKFASTRTLF------------IVQLLLMGFAETKRYMDYISPGSQT 171
P VW++ GA+ T F I +++L+G AE R ++ ++
Sbjct: 153 GPEAVWFKTGALLLD-GGTLNYFGKPIPINLIVAVIAEIVLVGGAEYYRIINGLN----- 206
Query: 172 KEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
E L +PGGP +PLGLA D A K+KEIKNG + +
Sbjct: 207 -------FEDKL------HPGGP-FDPLGLANDPDQAALLKVKEIKNGRLAM 244
>gi|224381552|gb|ACN41907.1| chlorophyll A/B binding protein [Gardenia jasminoides]
Length = 264
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 83/175 (47%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 63 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMPGALGCVFPELLSRNGV 122
Query: 124 R-ELPVWYEAGAVEFK--------------FASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F+ S ++ Q++LMG E R
Sbjct: 123 KFGEAVWFKAGSQIFQEGGLDYLGNPSLIHAQSILAIWACQVILMGAVEGYRIA------ 176
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E +P YPGG +PLGLA E K+KEIKNG + +
Sbjct: 177 -----GGPLG-----EVTDPIYPGGS-FDPLGLADVPEAFAELKVKEIKNGRLAM 220
>gi|118489770|gb|ABK96685.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 302
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/172 (34%), Positives = 84/172 (48%), Gaps = 34/172 (19%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRE 125
P YL G + GD+G+DP GL + P+ Y EL+HAR+AM G AG + + G
Sbjct: 92 PEYLTGEVPGDYGYDPFGLSKKPDDFEKYQAFELIHARWAMLGAAGFIIPEAFNKFGANC 151
Query: 126 LP--VWYEAGAVEFKFASTRTLF------------IVQLLLMGFAETKRYMDYISPGSQT 171
P VW++ GA+ +T F + +++L+G AE R I+ G
Sbjct: 152 GPEAVWFKTGALLLD-GNTLNYFGKNIPINLVLAVVAEVILVGGAEYFR----ITNG--- 203
Query: 172 KEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G + L +PGGP +PLGLAKD A K+KEIKNG + +
Sbjct: 204 -----LGFDDKL------HPGGP-FDPLGLAKDPDQAALLKVKEIKNGRLAM 243
>gi|47169444|pdb|1VCR|A Chain A, An Icosahedral Assembly Of Light-Harvesting Chlorophyll AB
Protein Complex From Pea Thylakoid Membranes
Length = 232
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 57/175 (32%), Positives = 84/175 (48%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+ P YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G+
Sbjct: 31 ESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGV 90
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 91 KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIA------ 144
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E ++P YPGG +PLGLA D E K+KE+KNG + +
Sbjct: 145 -----GGPLG-----EVVDPLYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAM 188
>gi|224285677|gb|ACN40554.1| unknown [Picea sitchensis]
Length = 278
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 57/174 (32%), Positives = 84/174 (48%), Gaps = 34/174 (19%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
D P YL+G + GD+G+DP GL + PE+ Y EL+HAR+AM G AG + + G
Sbjct: 78 DIPEYLNGEVPGDYGYDPFGLSKKPENFDKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 137
Query: 124 RELP--VWYEAGAVEFKFASTRTLF------------IVQLLLMGFAETKRYMDYISPGS 169
P VW++ GA+ T + F + +++L+G AE R +
Sbjct: 138 YCGPEAVWFKTGALLLD-GGTLSYFGASIPINLIAAVVAEVILVGGAEYYRATN------ 190
Query: 170 QTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
L+ + +PGGP +PLGLAKD K+KEIKNG + +
Sbjct: 191 ------------GLDFEDKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAM 231
>gi|81074613|gb|ABB55370.1| chlorophyll a-b binding protein 3C-like [Solanum tuberosum]
Length = 267
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 83/175 (47%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+ P YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 66 EAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 125
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 126 KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIA------ 179
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E ++P YPGG +PLGLA D E K+KEIKNG + +
Sbjct: 180 -----GGPLG-----EVVDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAM 223
>gi|374434016|gb|AEZ52400.1| LHCII type III chlorophyll a/b binding protein [Wolffia
australiana]
Length = 264
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/174 (33%), Positives = 82/174 (47%), Gaps = 32/174 (18%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLR--VTGI 123
P YL+G GD+G+D GL DPE+ E++H R+AM G G + ++L V
Sbjct: 63 PSYLNGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWVKVD 122
Query: 124 RELPVWYEAGAVEF-----------KFASTRTLFIV---QLLLMGFAETKRYMDYISPGS 169
+ PVW++AGA F +++ V Q+LLMG E R
Sbjct: 123 FKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFRIN------- 175
Query: 170 QTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
GL+ EG + YPGG +PLGLA D E K+KEIKNG + +
Sbjct: 176 --------GLDGVGEGNDL-YPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAM 220
>gi|412987928|emb|CCO19324.1| predicted protein [Bathycoccus prasinos]
Length = 415
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/186 (30%), Positives = 82/186 (44%), Gaps = 46/186 (24%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRE 125
P YLDGTLAGD FDPL L + E R V+ EL+H R+AM V G+ ++L +G E
Sbjct: 225 PSYLDGTLAGDAQFDPLRLSDTEEKRRRNVELELLHGRWAMLAVVGVCVPEILSRSGALE 284
Query: 126 L--PVWYEAG-----AVEFKFASTRTLFIV-----------QLLLMGFAETKRYMDYISP 167
L P+W++ G ++ + I Q +LMG E RY+
Sbjct: 285 LSEPIWWKIGEKVLEGIDVNYLGIEGFHIAGASGIIGIAFCQAVLMGGPEYARYV----- 339
Query: 168 GSQTKEGSFFGLEAALEGLEP---------GYPGGPLLNPLGLAKDIRNAREWKLKEIKN 218
+E LEP YPGG +P L+ D E ++ E+K+
Sbjct: 340 --------------GIESLEPVGVYLPGDTNYPGGGPFDPFNLSADAERDVELRVSEVKH 385
Query: 219 GLICLV 224
G + ++
Sbjct: 386 GRLAMI 391
>gi|162458005|ref|NP_001105502.1| photosystem II subunit29 [Zea mays]
gi|2326947|emb|CAA90681.1| Chlorophyll a/b-binding protein CP29 precursor [Zea mays]
gi|195639374|gb|ACG39155.1| hypothetical protein [Zea mays]
gi|414887094|tpg|DAA63108.1| TPA: chlorophyll a/b-binding protein CP29 Precursor isoform 1 [Zea
mays]
gi|414887095|tpg|DAA63109.1| TPA: chlorophyll a/b-binding protein CP29 Precursor isoform 2 [Zea
mays]
Length = 291
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 65/242 (26%), Positives = 96/242 (39%), Gaps = 78/242 (32%)
Query: 36 LPAKSGTTRRYLATVVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRW-- 93
L K+ + +A + RP W PG P YLDG+L GD+GFDP GLG+ E L++
Sbjct: 35 LGGKAKPAPKKVAKTSTSSDRPLWFPGAVAPDYLDGSLVGDYGFDPFGLGKPVEYLQFEL 94
Query: 94 -----------------------------------------YVQAELVHARFAMAGVAGI 112
+ + EL+H R+AM G
Sbjct: 95 DSLDQNLAKNEAGGIIGTRFESSEVKSTPLQPYSEVFGLQRFRECELIHGRWAMLATLGA 154
Query: 113 LFTDLLRVTGIRELPVWYEAGAVEFKFAST----------RTLFIVQLLLMGFAETKRYM 162
L + L TG+ W +AG VE S+ TL +++L++G+ E +R
Sbjct: 155 LSVEWL--TGV----TWQDAGKVELVDGSSYLGQPLPFSISTLIWIEVLVIGYIEFQR-- 206
Query: 163 DYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLIC 222
A L+ + YPGG +PLGLA D +L EIK+ +
Sbjct: 207 -----------------NAELDPEKRLYPGGSYFDPLGLAADPEKKERLQLAEIKHARLA 249
Query: 223 LV 224
+V
Sbjct: 250 MV 251
>gi|18403546|ref|NP_565786.1| light-harvesting complex II chlorophyll a/b binding protein 1
[Arabidopsis thaliana]
gi|13926260|gb|AAK49602.1|AF372886_1 At2g34420/T31E10.24 [Arabidopsis thaliana]
gi|16226426|gb|AAL16165.1|AF428397_1 At2g34420/T31E10.24 [Arabidopsis thaliana]
gi|16930391|gb|AAL31882.1|AF419548_1 At2g34420/T31E10.24 [Arabidopsis thaliana]
gi|16930467|gb|AAL31919.1|AF419587_1 At2g34420/T31E10.24 [Arabidopsis thaliana]
gi|16364|emb|CAA45790.1| photosystem II type I chlorophyll a /b binding protein [Arabidopsis
thaliana]
gi|3128230|gb|AAC26710.1| photosystem II type I chlorophyll a/b binding protein [Arabidopsis
thaliana]
gi|14517452|gb|AAK62616.1| At2g34420/T31E10.24 [Arabidopsis thaliana]
gi|15027899|gb|AAK76480.1| putative photosystem II type I chlorophyll a/b binding protein
[Arabidopsis thaliana]
gi|17473689|gb|AAL38301.1| photosystem II type I chlorophyll a/b binding protein [Arabidopsis
thaliana]
gi|19310503|gb|AAL84985.1| At2g34420/T31E10.24 [Arabidopsis thaliana]
gi|19310521|gb|AAL84994.1| At2g34420/T31E10.24 [Arabidopsis thaliana]
gi|20148517|gb|AAM10149.1| photosystem II type I chlorophyll a/b binding protein [Arabidopsis
thaliana]
gi|20197168|gb|AAM14954.1| photosystem II type I chlorophyll a b binding protein [Arabidopsis
thaliana]
gi|23296426|gb|AAN13114.1| putative photosystem II type I chlorophyll a/b binding protein
[Arabidopsis thaliana]
gi|110739111|dbj|BAF01472.1| photosystem II type I chlorophyll a/b binding protein [Arabidopsis
thaliana]
gi|330253878|gb|AEC08972.1| light-harvesting complex II chlorophyll a/b binding protein 1
[Arabidopsis thaliana]
Length = 265
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/166 (33%), Positives = 82/166 (49%), Gaps = 13/166 (7%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G+
Sbjct: 63 EPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGV 122
Query: 124 R-ELPVWYEAGAVEFK-----FASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFF 177
+ VW++AG+ F + +L Q +L +A M + +G
Sbjct: 123 KFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGDGPLG 182
Query: 178 GLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
E L YPGG +PLGLA D E K+KE+KNG + +
Sbjct: 183 EAEDLL------YPGGS-FDPLGLATDPEAFAELKVKELKNGRLAM 221
>gi|359495476|ref|XP_002274150.2| PREDICTED: chlorophyll a-b binding protein 13, chloroplastic-like
[Vitis vinifera]
gi|147801944|emb|CAN77327.1| hypothetical protein VITISV_001096 [Vitis vinifera]
Length = 269
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/174 (33%), Positives = 81/174 (46%), Gaps = 32/174 (18%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLR--VTGI 123
P YL G GD+G+D GL DPE+ E++H R+AM G G + ++L V
Sbjct: 68 PSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGAFGCITPEVLEKWVKVD 127
Query: 124 RELPVWYEAGAVEF-----------KFASTRTLFIV---QLLLMGFAETKRYMDYISPGS 169
+ PVW++AGA F +++ V Q++LMG E R
Sbjct: 128 FKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGYRIN------- 180
Query: 170 QTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
GL EG + YPGGP +PLGLA D E K+KEIKNG + +
Sbjct: 181 --------GLPGVGEGNDL-YPGGPYFDPLGLADDPVTFAELKVKEIKNGRLAM 225
>gi|115779|sp|P12471.1|CB21_SOYBN RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCII type I CAB; Short=LHCP; Flags:
Precursor
gi|169933|gb|AAA33949.1| chlorophyll a/b-binding protein precursor, partial [Glycine max]
Length = 245
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/166 (33%), Positives = 82/166 (49%), Gaps = 14/166 (8%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G+
Sbjct: 44 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGV 103
Query: 124 R-ELPVWYEAGAVEFK-----FASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFF 177
+ W++AG+ F + ++L Q +L +A M + EG
Sbjct: 104 KFGEASWFKAGSQIFSEGGLDYLGNQSLIHAQSILAIWATQVILMGAV-------EGYRI 156
Query: 178 GLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
E +P YPGG +PL LA D E K+KEIKNG + +
Sbjct: 157 AGGPLGEVTDPIYPGGS-FDPLALADDPEAFAELKVKEIKNGRLAM 201
>gi|47168888|pdb|1RWT|A Chain A, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168889|pdb|1RWT|B Chain B, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168890|pdb|1RWT|C Chain C, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168891|pdb|1RWT|D Chain D, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168892|pdb|1RWT|E Chain E, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168893|pdb|1RWT|F Chain F, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168894|pdb|1RWT|G Chain G, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168895|pdb|1RWT|H Chain H, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168896|pdb|1RWT|I Chain I, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168897|pdb|1RWT|J Chain J, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
Length = 232
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 83/175 (47%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+ P YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 31 ESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 90
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 91 KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIA------ 144
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E ++P YPGG +PLGLA D E K+KEIKNG + +
Sbjct: 145 -----GGPLG-----EVVDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAM 188
>gi|18403549|ref|NP_565787.1| light-harvesting complex II chlorophyll a/b binding protein 1
[Arabidopsis thaliana]
gi|11908034|gb|AAG41446.1|AF326864_1 putative photosystem II type I chlorophyll a/b binding protein
[Arabidopsis thaliana]
gi|12642854|gb|AAK00369.1|AF339687_1 putative photosystem II type I chlorophyll a/b binding protein
[Arabidopsis thaliana]
gi|16366|emb|CAA45789.1| photosystem II type I chlorophyll a /b binding protein [Arabidopsis
thaliana]
gi|3128229|gb|AAC26709.1| putative photosystem II type I chlorophyll a/b binding protein
[Arabidopsis thaliana]
gi|20197164|gb|AAM14951.1| putative photosystem II type I chlorophyll a b binding protein
[Arabidopsis thaliana]
gi|21539563|gb|AAM53334.1| putative photosystem II type I chlorophyll a/b binding protein
[Arabidopsis thaliana]
gi|25083751|gb|AAN72114.1| putative photosystem II type I chlorophyll a/b binding protein
[Arabidopsis thaliana]
gi|330253879|gb|AEC08973.1| light-harvesting complex II chlorophyll a/b binding protein 1
[Arabidopsis thaliana]
Length = 266
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/166 (33%), Positives = 82/166 (49%), Gaps = 13/166 (7%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G+
Sbjct: 64 EPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGV 123
Query: 124 R-ELPVWYEAGAVEFK-----FASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFF 177
+ VW++AG+ F + +L Q +L +A M + +G
Sbjct: 124 KFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGDGPLG 183
Query: 178 GLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
E L YPGG +PLGLA D E K+KE+KNG + +
Sbjct: 184 EAEDLL------YPGGS-FDPLGLATDPEAFAELKVKELKNGRLAM 222
>gi|359495474|ref|XP_003634999.1| PREDICTED: chlorophyll a-b binding protein 13, chloroplastic-like
[Vitis vinifera]
Length = 269
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/174 (33%), Positives = 81/174 (46%), Gaps = 32/174 (18%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLR--VTGI 123
P YL G GD+G+D GL DPE+ E++H R+AM G G + ++L V
Sbjct: 68 PSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGAFGCITPEVLEKWVKVD 127
Query: 124 RELPVWYEAGAVEF-----------KFASTRTLFIV---QLLLMGFAETKRYMDYISPGS 169
+ PVW++AGA F +++ V Q++LMG E R
Sbjct: 128 FKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGYR--------- 178
Query: 170 QTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
GL EG + YPGGP +PLGLA D E K+KEIKNG + +
Sbjct: 179 ------INGLPGVGEGNDL-YPGGPYFDPLGLADDPVTFAELKVKEIKNGRLAM 225
>gi|115785|sp|P08963.1|CB22_HORVU RecName: Full=Chlorophyll a-b binding protein 2, chloroplastic;
AltName: Full=LHCII type I CAB-2; Short=LHCP; Flags:
Precursor
gi|18943|emb|CAA31232.1| LHC precursor protein (AA -34 to 230) [Hordeum vulgare]
Length = 264
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 57/175 (32%), Positives = 82/175 (46%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+ P YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 63 ESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHGRWAMLGALGCVFPELLARNGV 122
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++ G+ F S ++ Q++LMG E R
Sbjct: 123 KFGEAVWFKKGSQIFSEGGLQYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVA------ 176
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E ++P YPGG +PLGLA D E K+KEIKNG + +
Sbjct: 177 -----GGPLG-----EVVDPLYPGGS-FDPLGLADDAEAFAELKVKEIKNGRLAM 220
>gi|109389998|gb|ABG29728.1| chloroplast chlorophyll a/b binding protein [Brassica napus]
Length = 267
Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 55/166 (33%), Positives = 81/166 (48%), Gaps = 13/166 (7%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + +++H R+AM G G +F +LL G+
Sbjct: 65 EPPSYLTGEFPGDYGWDTAGLSADPETFARNRELQVIHCRWAMLGALGCVFPELLARNGV 124
Query: 124 R-ELPVWYEAGAVEFK-----FASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFF 177
+ VW++AG+ F + +L Q +L +A M + +G
Sbjct: 125 KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGDGPLG 184
Query: 178 GLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
E L YPGG +PLGLA D E K+KEIKNG + +
Sbjct: 185 EAEDLL------YPGGS-FDPLGLATDPEAFAELKVKEIKNGRLAM 223
>gi|115810|sp|P27496.1|CB25_TOBAC RecName: Full=Chlorophyll a-b binding protein 50, chloroplastic;
AltName: Full=LHCII type I CAB-50; Short=LHCP; Flags:
Precursor
gi|19833|emb|CAA36956.1| unnamed protein product [Nicotiana tabacum]
Length = 267
Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 57/175 (32%), Positives = 83/175 (47%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+ P YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 66 ESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 125
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 126 KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVA------ 179
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E ++P YPGG +PLGLA+D E K+K IKNG + +
Sbjct: 180 -----GGPLG-----EVVDPLYPGGS-FDPLGLAEDPEAFAELKVKHIKNGRLAM 223
>gi|168068372|ref|XP_001786046.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162662227|gb|EDQ49143.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 270
Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 59/171 (34%), Positives = 85/171 (49%), Gaps = 28/171 (16%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRE 125
P YL G + GD+G+DP GL + PE Y EL+HAR+AM G AG + + G
Sbjct: 68 PAYLTGEVPGDYGYDPFGLSKKPEDFDRYQAYELIHARWAMLGAAGFVLPEAFNKFGAVC 127
Query: 126 LP--VWYEAGAVEFKFASTRTL-----------FIVQLLLMGFAETKRYMDYISPGSQTK 172
P VW++ GA+ + S + I +++L+G AE R S K
Sbjct: 128 GPEAVWWKTGALLLEGDSIKYFGATVPINLAAAVIAEVILVGGAEYYR--------STNK 179
Query: 173 EGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
+ +G L+ L+ +PGG +PLGLAKD K+KEIKNG + +
Sbjct: 180 D--VYG----LQDLDRLHPGGA-FDPLGLAKDPDQFALLKVKEIKNGRLAM 223
>gi|109157229|pdb|2BHW|A Chain A, Pea Light-Harvesting Complex Ii At 2.5 Angstrom Resolution
gi|109157230|pdb|2BHW|B Chain B, Pea Light-Harvesting Complex Ii At 2.5 Angstrom Resolution
gi|109157231|pdb|2BHW|C Chain C, Pea Light-Harvesting Complex Ii At 2.5 Angstrom Resolution
Length = 232
Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 57/175 (32%), Positives = 84/175 (48%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+ P YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G+
Sbjct: 31 ESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGSVFPELLSRNGV 90
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 91 KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIA------ 144
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E ++P YPGG +PLGLA D E K+KE+KNG + +
Sbjct: 145 -----GGPLG-----EVVDPLYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAM 188
>gi|53748425|emb|CAH59405.1| light harvesting protein 1 [Plantago major]
Length = 229
Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 57/175 (32%), Positives = 85/175 (48%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+ P YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G+
Sbjct: 28 ESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGV 87
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 88 KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVA------ 141
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E ++P YPGG +PLGLA+D E K+KE+KNG + +
Sbjct: 142 -----GGPLG-----EVVDPLYPGGS-FDPLGLAEDPEAFAELKVKELKNGRLAM 185
>gi|242050544|ref|XP_002463016.1| hypothetical protein SORBIDRAFT_02g036260 [Sorghum bicolor]
gi|241926393|gb|EER99537.1| hypothetical protein SORBIDRAFT_02g036260 [Sorghum bicolor]
Length = 288
Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 63/225 (28%), Positives = 90/225 (40%), Gaps = 78/225 (34%)
Query: 53 AQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRW------------------- 93
+ RP W PG P YLDGTL GD+GFDP GLG+ E L++
Sbjct: 49 SSDRPLWFPGAVAPDYLDGTLVGDYGFDPFGLGKPVEYLQFDLDSLDQNLAKNEPGVVIG 108
Query: 94 ------------------------YVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVW 129
+ + EL+H R+AM G L + L TG+ W
Sbjct: 109 TRFESSDVKSTPLQPYSEVFGLQRFRECELIHGRWAMLATLGALSVEWL--TGV----TW 162
Query: 130 YEAGAVEFKFAST----------RTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGL 179
+AG VE S+ TL +++L++G+ E +R
Sbjct: 163 QDAGKVELVDGSSYLGQPLPFSISTLIWIEVLVIGYIEFQR------------------- 203
Query: 180 EAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
A L+ + YPGG +PLGLA D +L EIK+ + +V
Sbjct: 204 NAELDPEKRLYPGGSYFDPLGLAADPEKKERLQLAEIKHARLAMV 248
>gi|255645788|gb|ACU23386.1| unknown [Glycine max]
Length = 289
Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 81/171 (47%), Gaps = 32/171 (18%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRE 125
P YL G + GD+G+DP GL + PE Y EL+HAR+AM G AG + + G
Sbjct: 91 PEYLTGEVPGDYGYDPSGLSKKPEDFSKYQAFELIHARWAMLGAAGFIIPEAFNKYGANC 150
Query: 126 LP--VWYEAGAVEFKFASTRTL-----------FIVQLLLMGFAETKRYMDYISPGSQTK 172
P VW++ GA+ + I +++L+G AE R ++ ++
Sbjct: 151 GPEAVWFKTGALLLDGGTLNYFGKPIPINLIVAVIAEIVLVGGAEYYRIINGLN------ 204
Query: 173 EGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
E L +PGGP +PLGLA D A K+KEIKNG + +
Sbjct: 205 ------FEDKL------HPGGP-FDPLGLANDPDQAALLKVKEIKNGRLAM 242
>gi|3036942|dbj|BAA25388.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 265
Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 57/175 (32%), Positives = 83/175 (47%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+ P YL GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 64 ESPSYLTSEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 123
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 124 KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVA------ 177
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E ++P YPGG +PLGLA+D E K+KEIKNG + +
Sbjct: 178 -----GGPLG-----EVVDPLYPGGS-FDPLGLAEDPEAFAELKVKEIKNGRLAM 221
>gi|115786|sp|P06671.1|CB22_MAIZE RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCII type I CAB; Short=LHCP; Flags:
Precursor
gi|22357|emb|CAA68451.1| LHCP [Zea mays]
Length = 265
Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 84/176 (47%), Gaps = 32/176 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 64 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 123
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 124 KFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRI------- 176
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
G G E ++P YPGG +PLGLA D E K+KE+K G + ++
Sbjct: 177 ----AGGPLG-----EVVDPLYPGGS-FDPLGLADDPEAFGELKVKELKKGRLAML 222
>gi|384246503|gb|EIE19993.1| chlorophyll a/b-binding protein [Coccomyxa subellipsoidea C-169]
Length = 254
Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 57/164 (34%), Positives = 87/164 (53%), Gaps = 15/164 (9%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLL-RVTGIR 124
P YL G GD+G+D GL DPE+ Y + E++H+R+A+ G GI+ +LL + G++
Sbjct: 53 PSYLKGEYPGDYGWDTAGLSADPETFSRYREIEVIHSRWALLGTLGIVTPELLEKYGGVK 112
Query: 125 -ELPVWYEAGAVEF-----KFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFG 178
+ VW++AGA F + +L Q ++ A T+ + ++ G + G
Sbjct: 113 FQEAVWFKAGAQIFSADGLNYLGNPSLVHAQSIIATVA-TQVILLGLAEGYRVNGGP--- 168
Query: 179 LEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLIC 222
A E +P YPGG +PLGLA D E K+KEIKNG +
Sbjct: 169 ---AGEITDPLYPGG-AFDPLGLADDPDTFAELKVKEIKNGRLA 208
>gi|413968456|gb|AFW90565.1| chlorophyll a-b binding protein 3C-like mRNA [Solanum tuberosum]
Length = 233
Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 83/175 (47%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+ P YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 32 ESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 91
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 92 KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIA------ 145
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E ++P YPGG +PLGLA D E K+KEIKNG + +
Sbjct: 146 -----GGPLG-----EVVDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAM 189
>gi|118489398|gb|ABK96503.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 283
Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 62/223 (27%), Positives = 89/223 (39%), Gaps = 78/223 (34%)
Query: 55 QRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRW--------------------- 93
RP W PG P YLDG+L GD+GFDP GLG E L++
Sbjct: 48 DRPLWYPGAKAPEYLDGSLVGDYGFDPFGLGRPAEYLQFELDSLDQNLAKNLAGDIIGTR 107
Query: 94 ----------------------YVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYE 131
+ + EL+H R+AM G L + L TG+ W +
Sbjct: 108 TEVSDVKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGALSVEWL--TGV----TWQD 161
Query: 132 AGAVEFKFAST----------RTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEA 181
AG VE S+ TL ++++L++G+ E +R A
Sbjct: 162 AGKVELVEGSSYLGQPLPFSITTLILIEVLVIGYIEFQR-------------------NA 202
Query: 182 ALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
L+ + YPGG +PLGLA D +L EIK+ + +V
Sbjct: 203 ELDPEKRLYPGGNFFDPLGLAADPEKKATLQLAEIKHARLAMV 245
>gi|115812|sp|P27491.1|CB27_TOBAC RecName: Full=Chlorophyll a-b binding protein 7, chloroplastic;
AltName: Full=LHCII type I CAB-7; Short=LHCP; Flags:
Precursor
gi|19837|emb|CAA41187.1| chlorophyll a /b binding protein [Nicotiana tabacum]
Length = 267
Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 82/175 (46%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+ P YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 66 EAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 125
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 126 KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAIEGYRVA------ 179
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E +P YPGG +PLGLA D E K+KEIKNG + +
Sbjct: 180 -----GGPLG-----EVTDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAM 223
>gi|9587205|gb|AAF89206.1|AF279249_1 LHCII type I chlorophyll a/b-binding protein [Vigna radiata]
Length = 264
Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 57/175 (32%), Positives = 83/175 (47%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+ P YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G+
Sbjct: 63 EAPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGV 122
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 123 KFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIA------ 176
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E +P YPGG +PLGLA D E K+KE+KNG + +
Sbjct: 177 -----GGPLG-----EVTDPIYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAM 220
>gi|224140409|ref|XP_002323575.1| predicted protein [Populus trichocarpa]
gi|222868205|gb|EEF05336.1| predicted protein [Populus trichocarpa]
Length = 283
Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 62/223 (27%), Positives = 89/223 (39%), Gaps = 78/223 (34%)
Query: 55 QRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRW--------------------- 93
RP W PG P YLDG+L GD+GFDP GLG E L++
Sbjct: 48 DRPLWYPGAKAPEYLDGSLVGDYGFDPFGLGRPAEYLQFELDSLDQNLAKNLAGDIIGTR 107
Query: 94 ----------------------YVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYE 131
+ + EL+H R+AM G L + L TG+ W +
Sbjct: 108 TEVSDVKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGALSVEWL--TGV----TWQD 161
Query: 132 AGAVEFKFAST----------RTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEA 181
AG VE S+ TL ++++L++G+ E +R A
Sbjct: 162 AGKVELVEGSSYLGQPLPFSITTLILIEVLVIGYIEFQR-------------------NA 202
Query: 182 ALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
L+ + YPGG +PLGLA D +L EIK+ + +V
Sbjct: 203 ELDPEKRLYPGGNFFDPLGLAADPEKKATLQLAEIKHARLAMV 245
>gi|3036953|dbj|BAA25395.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 267
Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 82/175 (46%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+ P YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 66 EAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 125
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 126 KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAIEGYRVA------ 179
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E +P YPGG +PLGLA D E K+KEIKNG + +
Sbjct: 180 -----GGPLG-----EVTDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAM 223
>gi|413968514|gb|AFW90594.1| chloroplast chlorophyll a/b binding protein [Solanum tuberosum]
Length = 276
Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 82/175 (46%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+ P YL G GD+G+D GL DPE+ + E++H R+AM G G F +LL G+
Sbjct: 64 ESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCDFPELLARNGV 123
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 124 KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIA------ 177
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E ++P YPGG +PLGLA D E K+KEIKNG + +
Sbjct: 178 -----GGPLG-----EVVDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAM 221
>gi|297851414|ref|XP_002893588.1| hypothetical protein ARALYDRAFT_473203 [Arabidopsis lyrata subsp.
lyrata]
gi|297339430|gb|EFH69847.1| hypothetical protein ARALYDRAFT_473203 [Arabidopsis lyrata subsp.
lyrata]
Length = 262
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 55/166 (33%), Positives = 81/166 (48%), Gaps = 13/166 (7%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G+
Sbjct: 60 EPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGV 119
Query: 124 R-ELPVWYEAGAVEFK-----FASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFF 177
+ VW++AG+ F + +L Q +L +A M + G
Sbjct: 120 KFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNGPLG 179
Query: 178 GLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
E L YPGG +PLGLA D E K+KE+KNG + +
Sbjct: 180 EAEDLL------YPGGS-FDPLGLATDPEAFAELKVKELKNGRLAM 218
>gi|297845914|ref|XP_002890838.1| hypothetical protein ARALYDRAFT_473204 [Arabidopsis lyrata subsp.
lyrata]
gi|297336680|gb|EFH67097.1| hypothetical protein ARALYDRAFT_473204 [Arabidopsis lyrata subsp.
lyrata]
Length = 262
Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 55/166 (33%), Positives = 81/166 (48%), Gaps = 13/166 (7%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G+
Sbjct: 60 EPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGV 119
Query: 124 R-ELPVWYEAGAVEFK-----FASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFF 177
+ VW++AG+ F + +L Q +L +A M + G
Sbjct: 120 KFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNGPLG 179
Query: 178 GLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
E L YPGG +PLGLA D E K+KE+KNG + +
Sbjct: 180 EAEDLL------YPGGS-FDPLGLATDPEAFAELKVKELKNGRLAM 218
>gi|168007695|ref|XP_001756543.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162692139|gb|EDQ78497.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 225
Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 61/189 (32%), Positives = 82/189 (43%), Gaps = 37/189 (19%)
Query: 55 QRPTWL-PGVDP---PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVA 110
RP W P P P YL G GD+G D L P + EL++ R+AM G+
Sbjct: 29 NRPLWKGPFTKPKDVPEYLKGEYPGDYGCDIFKLARLPANYARLRTQELMNGRWAMLGIT 88
Query: 111 GILFTDLLRVTGIREL-PVWYEAGAVEFK-----------FASTRTLF---IVQLLLMGF 155
G L +L+ PVW+ GA F F + +LF +VQ LLMG
Sbjct: 89 GCLTPELINSNSTPGFEPVWFNTGAQIFSDAGIDYLGVPGFINAHSLFAVIVVQALLMGL 148
Query: 156 AETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKE 215
AE R ++ EG +P YPGG +PLG + D E K+KE
Sbjct: 149 AEYAR------------------IKFVPEGADPFYPGGKTFDPLGFSSDPEILAELKVKE 190
Query: 216 IKNGLICLV 224
IKNG + ++
Sbjct: 191 IKNGRLAMM 199
>gi|19423289|gb|AAL88458.1|AF479779_1 major light-harvesting complex II protein m7 [Chlamydomonas
reinhardtii]
Length = 258
Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 68/214 (31%), Positives = 96/214 (44%), Gaps = 37/214 (17%)
Query: 33 SAFLPAKSGTTRRYLATVVRAQQRPTWLPGVD-----------------PPPYLDGTLAG 75
SA PA+ GT + A RP PG++ P Y G
Sbjct: 15 SARPPARRGTGKT-------AASRPPPAPGIEFYGPNRAKWLGPYSENATPAYRLAKFPG 67
Query: 76 DFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR-ELPVWYEAGA 134
D+G+D GL DPE+ + Y + EL+HAR+AM G G + +LL +G + VW++AGA
Sbjct: 68 DYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCITPELLAKSGTQFGEAVWFKAGA 127
Query: 135 VEFK-----FASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPG 189
F + +L Q + K + + G + G A EGL+P
Sbjct: 128 QIFSEGGLDYLGNPSLVHAQNIRRHPGRFKVILMGLVEGYRVNGGP------AGEGLDPL 181
Query: 190 YPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
YP G +PLGLA D E K+KEIKNG + +
Sbjct: 182 YP-GESFDPLGLADDPDTFAELKVKEIKNGRLAM 214
>gi|298573438|gb|ADI88502.1| protoporphyrin IX magnesium chelatase [Pteris vittata]
Length = 266
Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 57/165 (34%), Positives = 83/165 (50%), Gaps = 14/165 (8%)
Query: 65 PPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR 124
PP YL G GD+G+D GL DPE+ + EL+HAR+AM G G + +LL G++
Sbjct: 66 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELELIHARWAMLGALGCVTPELLAKNGVK 125
Query: 125 -ELPVWYEAGAVEF-----KFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFG 178
VW++AG+ F + +L Q +L +A M + G + G
Sbjct: 126 FGEAVWFKAGSQIFAEGGLDYLGNPSLVHAQSILAIWAFQVVLMGAVE-GYRVAGGPLGE 184
Query: 179 LEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
+E +P YPGG +PLGLA D E K+KE+KNG + +
Sbjct: 185 VE------DPLYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAM 222
>gi|297823231|ref|XP_002879498.1| LHB1B1 [Arabidopsis lyrata subsp. lyrata]
gi|297325337|gb|EFH55757.1| LHB1B1 [Arabidopsis lyrata subsp. lyrata]
Length = 266
Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 55/166 (33%), Positives = 81/166 (48%), Gaps = 13/166 (7%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G+
Sbjct: 64 EPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGV 123
Query: 124 R-ELPVWYEAGAVEFK-----FASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFF 177
+ VW++AG+ F + +L Q +L +A M + G
Sbjct: 124 KFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNGPLG 183
Query: 178 GLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
E L YPGG +PLGLA D E K+KE+KNG + +
Sbjct: 184 EAEDLL------YPGGS-FDPLGLATDPEAFAELKVKELKNGRLAM 222
>gi|87313181|gb|ABD37887.1| light-harvesting chlorophyll-a/b binding protein LhcbM3 [Mesostigma
viride]
gi|87313183|gb|ABD37888.1| light-harvesting chlorophyll-a/b binding protein LhcbM5 [Mesostigma
viride]
gi|87313185|gb|ABD37889.1| light-harvesting chlorophyll-a/b binding protein LhcbM4 [Mesostigma
viride]
gi|145079700|tpg|DAA05924.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm4 [Mesostigma viride]
gi|145079723|tpg|DAA05925.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm2 [Mesostigma viride]
gi|145079757|tpg|DAA05931.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm3 [Mesostigma viride]
Length = 267
Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 63/186 (33%), Positives = 85/186 (45%), Gaps = 34/186 (18%)
Query: 55 QRPTWL-PGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGIL 113
R T+L P D P YL G GD+G+D +GL DPE+ Y + EL+HAR+AM G G
Sbjct: 49 DRVTFLGPFTDVPSYLTGEYPGDYGWDTVGLSADPETFAAYREIELMHARWAMLGTLGCF 108
Query: 114 FTDLL-RVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQLLLMGFAE 157
+ L + +GI VW++AG F+ S +Q LLMG E
Sbjct: 109 LPEALEKYSGINFGESVWFKAGGQIFQEGGLDYLGNPSLVHAQSIIATVFIQALLMGLVE 168
Query: 158 TKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIK 217
R + G + G + YPGG +PLGL D E K+KEIK
Sbjct: 169 GYR----VGGGPLGEAG------------DKMYPGGS-FDPLGLGDDPDTLAELKVKEIK 211
Query: 218 NGLICL 223
NG + +
Sbjct: 212 NGRLAM 217
>gi|974850|emb|CAA61432.1| LHCII type I protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 57/175 (32%), Positives = 84/175 (48%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 65 EPPSYLTGDFPGDYGWDTAGLSADPETFSKNRELEVIHCRWAMLGALGCVFPELLARNGV 124
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 125 KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRV------- 177
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E ++P YPGG +PLGLA+ + K+KEIKNG + +
Sbjct: 178 ----AGGPLG-----EIVDPLYPGG-RFDPLGLAERPQAFDALKVKEIKNGRLAM 222
>gi|87313177|gb|ABD37885.1| light-harvesting chlorophyll-a/b binding protein LhcbM1 [Mesostigma
viride]
gi|87313179|gb|ABD37886.1| light-harvesting chlorophyll-a/b binding protein LhcbM2 [Mesostigma
viride]
gi|145079623|tpg|DAA05921.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm1 [Mesostigma viride]
Length = 267
Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 63/186 (33%), Positives = 85/186 (45%), Gaps = 34/186 (18%)
Query: 55 QRPTWL-PGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGIL 113
R T+L P D P YL G GD+G+D +GL DPE+ Y + EL+HAR+AM G G
Sbjct: 49 DRVTFLGPFTDVPSYLTGEYPGDYGWDTVGLSADPETFAAYREIELMHARWAMLGTLGCF 108
Query: 114 FTDLL-RVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQLLLMGFAE 157
+ L + +GI VW++AG F+ S +Q LLMG E
Sbjct: 109 LPEALEKYSGINFGESVWFKAGGQIFQEGGLDYLGNPSLVHAQSIIATVFIQALLMGLVE 168
Query: 158 TKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIK 217
R + G + G + YPGG +PLGL D E K+KEIK
Sbjct: 169 GYR----VGGGPLGEAG------------DKMYPGGS-FDPLGLGDDPDTLAELKVKEIK 211
Query: 218 NGLICL 223
NG + +
Sbjct: 212 NGRLAM 217
>gi|110377793|gb|ABG73417.1| chloroplast pigment-binding protein CP26 [Nicotiana tabacum]
Length = 285
Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 54/160 (33%), Positives = 78/160 (48%), Gaps = 10/160 (6%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRE 125
P YL+G + GD+G+DP GL + PE Y EL+HAR+AM G AG + + G
Sbjct: 87 PEYLNGEVPGDYGYDPFGLSKKPEDFAKYQAYELIHARWAMLGAAGFVIPEAFNKFGADC 146
Query: 126 LP--VWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAAL 183
P VW++ GA+ +T F + + + + + + LE L
Sbjct: 147 GPEAVWFKTGALLLD-GNTLNYFGKNIPINLVVAVVAEVVLLGGAEYYRITNGLDLEDKL 205
Query: 184 EGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
+PGGP +PLGLAKD A K+KEIKNG + +
Sbjct: 206 ------HPGGP-FDPLGLAKDPDQAAILKVKEIKNGRLAM 238
>gi|607148|emb|CAA57407.1| light harvesting chlorophyll a /b-binding protein Lhcb1*1 [Picea
abies]
Length = 278
Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 81/175 (46%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 77 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHGRWAMLGALGCVFPELLARNGV 136
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AGA F S + Q++LMG E R
Sbjct: 137 KFGEAVWFKAGAQIFSEGGLDYLGSPNLIHAQSILAILACQVILMGAIEGYRVA------ 190
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E +P YPGG +PLG A D E K+KE+KNG + +
Sbjct: 191 -----GGPLG-----EVTDPIYPGGN-FDPLGWADDPDAFAELKVKELKNGRLAM 234
>gi|116781997|gb|ABK22330.1| unknown [Picea sitchensis]
Length = 278
Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 81/175 (46%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 77 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHGRWAMLGALGCVFPELLARNGV 136
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AGA F S + Q++LMG E R
Sbjct: 137 KFGEAVWFKAGAQIFSEGGLDYLGSPNLVHAQSILAILACQVILMGAIEGYRVA------ 190
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E +P YPGG +PLG A D E K+KE+KNG + +
Sbjct: 191 -----GGPLG-----EVTDPIYPGGN-FDPLGWADDPDAFAELKVKELKNGRLAM 234
>gi|226263|prf||1503276A chlorophyll a/b binding protein
Length = 245
Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 82/166 (49%), Gaps = 14/166 (8%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G+
Sbjct: 44 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGV 103
Query: 124 R-ELPVWYEAGAVEFK-----FASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFF 177
+ W++AG+ F + ++L Q +L +A M + EG
Sbjct: 104 KFGEACWFKAGSQIFSEGGLDYLGNQSLIHAQSILAIWATQVILMGAV-------EGYRI 156
Query: 178 GLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
E +P YPGG +PL LA D E K+KE+KNG + +
Sbjct: 157 AGGPLGEVTDPIYPGGS-FDPLALADDPEAFAELKVKELKNGRLAM 201
>gi|116785761|gb|ABK23849.1| unknown [Picea sitchensis]
Length = 278
Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 81/175 (46%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 77 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHGRWAMLGALGCVFPELLARNGV 136
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AGA F S + Q++LMG E R
Sbjct: 137 KFGEAVWFKAGAQIFSEGGLDYLGSPNLVHAQSILAILACQVILMGAIEGYRVA------ 190
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E +P YPGG +PLG A D E K+KE+KNG + +
Sbjct: 191 -----GGPLG-----EVTDPIYPGGN-FDPLGWADDPDAFAELKVKELKNGRLAM 234
>gi|116791684|gb|ABK26071.1| unknown [Picea sitchensis]
gi|148908641|gb|ABR17429.1| unknown [Picea sitchensis]
Length = 278
Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 81/175 (46%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 77 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHGRWAMLGALGCVFPELLARNGV 136
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AGA F S + Q++LMG E R
Sbjct: 137 KFGEAVWFKAGAQIFSEGGLDYLGSPNLVHAQSILAILACQVILMGAIEGYRVA------ 190
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E +P YPGG +PLG A D E K+KE+KNG + +
Sbjct: 191 -----GGPLG-----EVTDPIYPGGN-FDPLGWADDPDAFAELKVKELKNGRLAM 234
>gi|21592428|gb|AAM64379.1| putative photosystem II type I chlorophyll a b binding protein
[Arabidopsis thaliana]
Length = 266
Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 55/166 (33%), Positives = 81/166 (48%), Gaps = 13/166 (7%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G+
Sbjct: 64 EPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGV 123
Query: 124 R-ELPVWYEAGAVEFK-----FASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFF 177
VW++AG+ F + +L Q +L +A M + +G
Sbjct: 124 EFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGDGPLG 183
Query: 178 GLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
E L YPGG +PLGLA D E K+KE+KNG + +
Sbjct: 184 EAEDLL------YPGGS-FDPLGLATDPEAFAELKVKELKNGRLAM 222
>gi|116783956|gb|ABK23158.1| unknown [Picea sitchensis]
Length = 303
Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 57/174 (32%), Positives = 84/174 (48%), Gaps = 34/174 (19%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
D P YL+G + GD+G+DP GL + PE+ Y EL+HAR+AM G AG + + G
Sbjct: 103 DIPEYLNGEVPGDYGYDPFGLIKKPENFDKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 162
Query: 124 RELP--VWYEAGAVEFKFASTRTLF------------IVQLLLMGFAETKRYMDYISPGS 169
P VW++ GA+ T + F + +++L+G AE R +
Sbjct: 163 YCGPEAVWFKTGALLLD-GGTLSYFGASIPINLIAAVVAEVILVGGAEYYRATN------ 215
Query: 170 QTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
L+ + +PGGP +PLGLAKD K+KEIKNG + +
Sbjct: 216 ------------GLDFEDKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAM 256
>gi|413968348|gb|AFW90512.1| chlorophyll a/b-binding protein [Phaseolus vulgaris]
Length = 263
Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 57/175 (32%), Positives = 83/175 (47%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+ P YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G+
Sbjct: 62 EAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGV 121
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 122 KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIA------ 175
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E +P YPGG +PLGLA D E K+KE+KNG + +
Sbjct: 176 -----GGPLG-----EITDPIYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAM 219
>gi|20260162|gb|AAM12979.1| chlorophyll a/b-binding protein CP29 [Arabidopsis thaliana]
Length = 290
Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 61/223 (27%), Positives = 90/223 (40%), Gaps = 78/223 (34%)
Query: 55 QRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRW--------------------- 93
RP W PG P +LDG+L GD+GFDP GLG+ E L++
Sbjct: 54 DRPVWYPGAISPDWLDGSLVGDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNLAGDVIGTR 113
Query: 94 ----------------------YVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYE 131
+ + EL+H R+AM G L + L TG+ W +
Sbjct: 114 TEAADAKSTPFQPYSEVFGIQRFRECELIHGRWAMLATLGALSVEWL--TGV----TWQD 167
Query: 132 AGAVEFKFAST----------RTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEA 181
AG VE S+ TL +++L++G+ E +R A
Sbjct: 168 AGKVELVDGSSYLGQPLPFSISTLIWIEVLVIGYIEFQR-------------------NA 208
Query: 182 ALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
L+ + YPGG +PLGLA D + +L EIK+ + +V
Sbjct: 209 ELDSEKRLYPGGKFFDPLGLAADPEKTAQLQLAEIKHARLAMV 251
>gi|116784226|gb|ABK23263.1| unknown [Picea sitchensis]
gi|116792001|gb|ABK26194.1| unknown [Picea sitchensis]
gi|224285000|gb|ACN40229.1| unknown [Picea sitchensis]
gi|224285305|gb|ACN40377.1| unknown [Picea sitchensis]
Length = 278
Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 81/175 (46%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 77 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHGRWAMLGALGCVFPELLARNGV 136
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AGA F S + Q++LMG E R
Sbjct: 137 KFGEAVWFKAGAQIFSEGGLDYLGSPNLVHAQSILAILACQVILMGAIEGYRVA------ 190
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E +P YPGG +PLG A D E K+KE+KNG + +
Sbjct: 191 -----GGPLG-----EVTDPIYPGGN-FDPLGWADDPDAFAELKVKELKNGRLAM 234
>gi|297826903|ref|XP_002881334.1| chlorophyll A-B-binding protein 2 precursor [Arabidopsis lyrata
subsp. lyrata]
gi|297327173|gb|EFH57593.1| chlorophyll A-B-binding protein 2 precursor [Arabidopsis lyrata
subsp. lyrata]
Length = 245
Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 55/166 (33%), Positives = 81/166 (48%), Gaps = 13/166 (7%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G+
Sbjct: 43 EPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGV 102
Query: 124 R-ELPVWYEAGAVEFK-----FASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFF 177
+ VW++AG+ F + +L Q +L +A M + G
Sbjct: 103 KFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNGPLG 162
Query: 178 GLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
E L YPGG +PLGLA D E K+KE+KNG + +
Sbjct: 163 EAEDLL------YPGGS-FDPLGLATDPEAFAELKVKELKNGRLAM 201
>gi|255647011|gb|ACU23974.1| unknown [Glycine max]
Length = 264
Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 83/175 (47%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP Y G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G+
Sbjct: 63 EPPSYRTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGV 122
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 123 KFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIA------ 176
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E +P YPGG +PLGLA D E K+KE+K+G + +
Sbjct: 177 -----GGPLG-----EVTDPIYPGGS-FDPLGLADDPEAFAELKVKELKHGRLAM 220
>gi|168000216|ref|XP_001752812.1| predicted protein [Physcomitrella patens subsp. patens]
gi|168000420|ref|XP_001752914.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162695975|gb|EDQ82316.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162696077|gb|EDQ82418.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 227
Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 59/171 (34%), Positives = 83/171 (48%), Gaps = 29/171 (16%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRE 125
P YL G + GD+G+DP GL + PE Y EL+HAR+AM G AG + + G
Sbjct: 26 PEYLTGEVPGDYGYDPFGLSKKPEDFDRYQAYELIHARWAMLGAAGFVLPEAFNKFGAVC 85
Query: 126 LP--VWYEAGAVEFK------FASTRTL-----FIVQLLLMGFAETKRYMDYISPGSQTK 172
P VW++ GA+ + F +T L I +++L+G AE R + GS
Sbjct: 86 GPEAVWWKTGALLLEGDSIKYFGATVPLNLAAAVIAEVILVGGAEYYRSTNKSPLGSD-- 143
Query: 173 EGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
L+ +PGG +PLGLAKD K+KEIKNG + +
Sbjct: 144 -------------LDRLHPGG-AFDPLGLAKDPDQFALLKVKEIKNGRLAM 180
>gi|169743370|gb|ACA66263.1| chloroplast chlorophyll a/b binding protein precursor
[Phyllostachys edulis]
Length = 261
Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 58/174 (33%), Positives = 84/174 (48%), Gaps = 34/174 (19%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H R+AM GVAG + + G
Sbjct: 61 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGVAGFIIPEACNKFGA 120
Query: 124 RELP--VWYEAGAVEFKFASTRTLF------------IVQLLLMGFAETKRYMDYISPGS 169
P VW++ GA+ +T F I +++L+G AE R ++ +
Sbjct: 121 NCGPEAVWFKTGALLLD-GNTLNYFGNSIPINLILAVIAEVVLVGGAEYYRIINGLD--- 176
Query: 170 QTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
LE L +PGGP +PLGLA D A K+KEIKNG + +
Sbjct: 177 ---------LEDKL------HPGGP-FDPLGLASDPDQAALLKVKEIKNGRLAM 214
>gi|115799|sp|P15195.1|CB23_POLMU RecName: Full=Chlorophyll a-b binding protein type 1 member F3,
chloroplastic; AltName: Full=Chlorophyll a-b binding
protein type I F3; Short=CAB-F3; AltName: Full=LHCP;
Flags: Precursor
gi|169440|gb|AAA68425.1| chlorophyll a/b-binding protein F3 [Polystichum munitum]
Length = 265
Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 56/174 (32%), Positives = 83/174 (47%), Gaps = 32/174 (18%)
Query: 65 PPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR 124
PP YL G GD+G+D GL DPE+ + E++H+R+AM G G + +LL G++
Sbjct: 65 PPSYLSGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVTPELLAKNGVK 124
Query: 125 -ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPGS 169
VW++AG+ F S ++ Q++LMG E G
Sbjct: 125 FGEAVWFKAGSQIFAEGGLDYLGNPSLVHAQSILAIWACQVILMGAVE----------GY 174
Query: 170 QTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
+ G +E +P YPGG +PLGLA D E K+KE+KNG + +
Sbjct: 175 RVAGGPLGEVE------DPIYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAM 221
>gi|255076759|ref|XP_002502049.1| chlorophyll a/b-binding protein [Micromonas sp. RCC299]
gi|226517314|gb|ACO63307.1| chlorophyll a/b-binding protein [Micromonas sp. RCC299]
Length = 393
Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 71/217 (32%), Positives = 96/217 (44%), Gaps = 50/217 (23%)
Query: 34 AFLPAKSGTTRRYLATVVRAQQRPTWLP---GVDPPPYLDGTLAGDFGFDPLGLGE-DPE 89
A +PA G TRR +LP G P +LDGTL GD GFDPLGL P
Sbjct: 170 ATMPAHYGPTRR------------KFLPDGFGYPFPEHLDGTLCGDAGFDPLGLASGSPG 217
Query: 90 SLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIREL--PVWYEAGAVE----------- 136
L Y + EL+H R+AM GV G + L G EL PVW++ GA +
Sbjct: 218 DLDRYRELELLHGRWAMLGVVGAAVPEALARFGGLELGEPVWWKVGAAKLNSPDLALDYL 277
Query: 137 ----FKFASTRTLFIV---QLLLMGFAETKRY--MDYISPGSQTKEGSFFGLEAALEGLE 187
F A + L ++ QL+LMG E R +D + P G +
Sbjct: 278 GLGGFHIAGSSGLAVIAACQLVLMGGPEYARKVGIDSLVPVGVYLPG------------D 325
Query: 188 PGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
YPGG +P G++ D K+ E+K+G + +V
Sbjct: 326 RDYPGGAPFDPFGVSADAAVFERQKVAEMKHGRLAMV 362
>gi|303324978|pdb|3LW5|1 Chain 1, Improved Model Of Plant Photosystem I
Length = 170
Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 52/157 (33%), Positives = 75/157 (47%), Gaps = 27/157 (17%)
Query: 75 GDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVW--YEA 132
GDFGFDPLGLGE P +L Y ++EL+H R+AM V GIL + L + W
Sbjct: 4 GDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALGYGNWVKAQEWAALPG 63
Query: 133 GAVEF-----KFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLE 187
G + + + T+ ++ L + F E +R M+ +
Sbjct: 64 GQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRSMEKDPEKKK----------------- 106
Query: 188 PGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
YPGG +PLG +KD + E K+KEIKNG + L+
Sbjct: 107 --YPGG-AFDPLGYSKDPKKLEELKVKEIKNGRLALL 140
>gi|115782|sp|P04784.1|CB21_WHEAT RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCII type I CAB; Short=LHCP; Flags:
Precursor
gi|170674|gb|AAA34260.1| chlorophyll a/b-binding protein precursor [Triticum aestivum]
Length = 266
Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 57/175 (32%), Positives = 84/175 (48%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 65 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 124
Query: 124 RELPV-WYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ W++AG+ F S ++ Q++LMG E R
Sbjct: 125 KFGEAGWFKAGSQIFSDGGLDYLGNPSLVHAQSLLAIWACQVVLMGAVEGYRI------- 177
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E ++P YPGG +PLGLA+ + E K+KEIKNG + +
Sbjct: 178 ----AGGPLG-----EIVDPLYPGGS-FDPLGLAERPQAFAELKVKEIKNGRLAM 222
>gi|115784|sp|P08222.1|CB22_CUCSA RecName: Full=Chlorophyll a-b binding protein of LHCII type 1;
AltName: Full=Chlorophyll a-b binding protein of LHCII
type I; Short=CAB; Short=LHCP
gi|167525|gb|AAA33125.1| chlorophyll a/b-binding protein, partial [Cucumis sativus]
Length = 206
Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 57/175 (32%), Positives = 83/175 (47%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H+ +AM G G +F +LL G+
Sbjct: 5 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSTWAMLGALGCVFPELLSRNGV 64
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 65 KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIA------ 118
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E +P YPGG +PLGLA D E K+KE+KNG + +
Sbjct: 119 -----GGPLG-----EVTDPIYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAM 162
>gi|115472753|ref|NP_001059975.1| Os07g0558400 [Oryza sativa Japonica Group]
gi|3075488|gb|AAC14566.1| chlorophyll a/b-binding protein [Oryza sativa Japonica Group]
gi|34394009|dbj|BAC84033.1| chlorophyll a/b-binding protein [Oryza sativa Japonica Group]
gi|113611511|dbj|BAF21889.1| Os07g0558400 [Oryza sativa Japonica Group]
gi|125558786|gb|EAZ04322.1| hypothetical protein OsI_26463 [Oryza sativa Indica Group]
gi|215704418|dbj|BAG93852.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737393|dbj|BAG96322.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737709|dbj|BAG96839.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215764955|dbj|BAG86652.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215767447|dbj|BAG99675.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 290
Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 62/223 (27%), Positives = 89/223 (39%), Gaps = 78/223 (34%)
Query: 55 QRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRW--------------------- 93
RP W PG P YLDG+L GD+GFDP GLG+ E L++
Sbjct: 53 DRPLWFPGAVAPDYLDGSLVGDYGFDPFGLGKPAEYLQFELDSLDQNLAKNNAGEIIGTR 112
Query: 94 ----------------------YVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYE 131
+ + EL+H R+AM G L + L TG+ W +
Sbjct: 113 FETGEVKSTPFQPYTEVFGLQRFRECELIHGRWAMLATLGALSVEWL--TGV----TWQD 166
Query: 132 AGAVEFKFAST----------RTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEA 181
AG VE S+ TL +++L++G+ E +R A
Sbjct: 167 AGKVELVDGSSYLGQPLPFSISTLIWIEVLVIGYIEFQR-------------------NA 207
Query: 182 ALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
L+ + YPGG +PLGLA D +L EIK+ + +V
Sbjct: 208 ELDPEKRLYPGGSYFDPLGLASDPEKKERLQLAEIKHARLAMV 250
>gi|159147189|gb|ABW90989.1| LHCB5 [Phyllostachys edulis]
Length = 283
Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 80/160 (50%), Gaps = 10/160 (6%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRE 125
P YL+G + GD+G+DP GL ++P++ Y EL+HAR+AM G AG + + G
Sbjct: 85 PEYLNGEVPGDYGYDPFGLSKNPDNFARYQAYELIHARWAMLGAAGFIIPEACNKFGANC 144
Query: 126 LP--VWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAAL 183
P VW++ GA+ + +T F + + + + + + LE L
Sbjct: 145 GPEAVWFKTGALLLE-GNTLNYFGNSIPINLAVAVVAEVVLVGGAEYYRIINGLDLEGKL 203
Query: 184 EGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
+PGGP +PLGLA D A K+KEIKNG + +
Sbjct: 204 ------HPGGP-FDPLGLASDPDQAAPLKVKEIKNGRLAM 236
>gi|308809197|ref|XP_003081908.1| putative chlorophyll a/b-binding protein (ISS) [Ostreococcus tauri]
gi|63029305|gb|AAY27551.1| chloroplast Lhcq-like protein precursor [Ostreococcus tauri]
gi|116060375|emb|CAL55711.1| putative chlorophyll a/b-binding protein (ISS) [Ostreococcus tauri]
Length = 242
Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 58/178 (32%), Positives = 82/178 (46%), Gaps = 29/178 (16%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRE 125
P +LDGTL GD GFDPL L E L Y + EL+H R+AM GV G + L G+
Sbjct: 48 PAHLDGTLCGDVGFDPLNLAAKSEDLERYRELELLHGRWAMLGVVGAAVPETLDRFGVAN 107
Query: 126 L--PVWYEAGAVE--------------FKFASTRTLFIV---QLLLMGFAETKRYMDYIS 166
L PVW++ GA + F A + ++ QL+LMG E Y Y+
Sbjct: 108 LGEPVWWKVGAAKMNSDIALDYLGFSGFHIAGGSGIAVIAACQLVLMGGPE---YARYVG 164
Query: 167 PGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
S G + L G + YPGG +P + D + K+ EIK+ + ++
Sbjct: 165 INSLEPVGVY------LPG-DKDYPGGAPFDPFKFSDDAEEFEKQKVMEIKHCRLAMI 215
>gi|349443|gb|AAA60965.1| light-harvesting chlorophyll a/b binding protein of photosystem II
[Ginkgo biloba]
Length = 270
Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 57/175 (32%), Positives = 83/175 (47%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+ P YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G+
Sbjct: 69 EAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGV 128
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 129 KFGEAVWFKAGSQIFSDGGLDYLGNPSLIHAQSILAIWACQVILMGAVEGYRIA------ 182
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E +P YPGG +PLGLA D E K+KE+KNG + +
Sbjct: 183 -----GGPLG-----EITDPIYPGGS-FDPLGLADDPDAFAELKVKELKNGRLAM 226
>gi|18539449|gb|AAL74395.1|AF359127_1 LHC I type IV chlorophyll binding protein [Pinus sylvestris]
gi|18539451|gb|AAL74396.1|AF359128_1 LHC I type IV chlorophyll binding protein [Pinus sylvestris]
Length = 122
Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 45/119 (37%), Positives = 71/119 (59%), Gaps = 8/119 (6%)
Query: 106 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 165
M GVAG+L ++L G+ +P WY+AG VE+ FAS+ TLF+++ +L + E +R+ D
Sbjct: 2 MLGVAGMLIPEVLTSIGLINVPKWYDAGKVEY-FASSSTLFVIEFILFHYVELRRWQDIK 60
Query: 166 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
PGS ++ F + +L E GYPGG + NPL + + E K KE+ NG + ++
Sbjct: 61 YPGSVNQDPLF--KQYSLPPNEVGYPGG-IFNPLNFSPSM----EAKEKELANGRLAML 112
>gi|9587207|gb|AAF89207.1|AF279250_1 LHCII type I chlorophyll a/b-binding protein [Vigna radiata]
Length = 264
Score = 76.6 bits (187), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 55/166 (33%), Positives = 82/166 (49%), Gaps = 14/166 (8%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+ P YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G+
Sbjct: 63 EAPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGSVFPELLARNGV 122
Query: 124 R-ELPVWYEAGAVEFK-----FASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFF 177
+ VW++AG+ F + +L Q +L +A M + EG
Sbjct: 123 KFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWASQVILMGAV-------EGYRI 175
Query: 178 GLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
E +P YPGG +PLGLA D E K+KE+KNG + +
Sbjct: 176 AGGPLGEVTDPIYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAM 220
>gi|255639053|gb|ACU19827.1| unknown [Glycine max]
Length = 290
Score = 76.6 bits (187), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 63/226 (27%), Positives = 89/226 (39%), Gaps = 78/226 (34%)
Query: 52 RAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRW------------------ 93
R RP W PG P YLDG+L GD+GFDP GLG+ E L++
Sbjct: 50 RDTVRPLWYPGAKAPEYLDGSLVGDYGFDPFGLGKPAEYLQFELDSLDQNLAKNVAGDII 109
Query: 94 -------------------------YVQAELVHARFAMAGVAGILFTDLLRVTGIRELPV 128
+ + EL+H R+AM G L + L TG+
Sbjct: 110 GTRTELADVKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGALTVEWL--TGV----T 163
Query: 129 WYEAGAVEFKFAST----------RTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFG 178
W +AG VE S+ TL ++ L++G+ E +R
Sbjct: 164 WQDAGKVELVEGSSYLGQPLPFSITTLIWIEALVIGYIEFQR------------------ 205
Query: 179 LEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
A L+ + YPGG +PLGLA D +L EIK+ + +V
Sbjct: 206 -NAELDPEKRLYPGGSYFDPLGLASDPEKKATLQLAEIKHARLAMV 250
Score = 37.7 bits (86), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 79 FDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVW 129
FDPLGL DPE AE+ HAR AM G G F VTG L W
Sbjct: 222 FDPLGLASDPEKKATLQLAEIKHARLAMVGFLG--FAVQAAVTGKGPLNNW 270
>gi|145079801|tpg|DAA05936.1| TPA_inf: chloroplast light-harvesting complex protein CP26
precursor Lhcb5 [Micromonas sp. CCMP490]
Length = 333
Score = 76.6 bits (187), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 60/171 (35%), Positives = 87/171 (50%), Gaps = 17/171 (9%)
Query: 63 VDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTG 122
D P Y++GTLAGD+GFDPL LG+D + Y AE+ HAR+AM V G++ + L V G
Sbjct: 126 TDVPSYMNGTLAGDYGFDPLQLGKD-GKIAQYRIAEVQHARWAMLAVPGVVIPEALGVPG 184
Query: 123 IRELPVWYEAGAVEFKFASTRTLFI--------VQLLLMGFAETKRYMDYISP-GSQTKE 173
W E G V + R + +++ L+ E R +P G
Sbjct: 185 GN----WTETGKVFLDGEAGRPEILGNPYLFTAIEVALLAGVEGYRSGKLEAPAGFAPIY 240
Query: 174 GSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
G F G + +GL+P PGGP L+ L +A + K+KEIKNG + ++
Sbjct: 241 GKFEGKD--FKGLDPINPGGP-LDFLNVASTPEDLAILKVKEIKNGRLAMI 288
>gi|3386569|gb|AAC28490.1| photosystem II type II chlorophyll a/b binding protein [Sorghum
bicolor]
Length = 191
Score = 76.6 bits (187), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 55/164 (33%), Positives = 80/164 (48%), Gaps = 32/164 (19%)
Query: 75 GDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR-ELPVWYEAG 133
GD+G+D GL DPE+ + E++H+R+AM G G +F ++L G++ VW++AG
Sbjct: 1 GDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILAKNGVKFGEAVWFKAG 60
Query: 134 AVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGL 179
A F S ++ Q++LMGF E R G
Sbjct: 61 AQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMGFVEGYR----------------VGG 104
Query: 180 EAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
EGL+ YPGG +PLGLA D A E K+KE+KNG + +
Sbjct: 105 GPLGEGLDKVYPGGA-FDPLGLADDPDTAAELKVKELKNGRLAM 147
>gi|15081739|gb|AAK82524.1| AT5g01530/F7A7_50 [Arabidopsis thaliana]
Length = 290
Score = 76.6 bits (187), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 61/223 (27%), Positives = 90/223 (40%), Gaps = 78/223 (34%)
Query: 55 QRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRW--------------------- 93
RP W PG P +LDG+L GD+GFDP GLG+ E L++
Sbjct: 54 DRPLWYPGAISPDWLDGSLVGDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNLAGDVIGTR 113
Query: 94 ----------------------YVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYE 131
+ + EL+H R+AM G L + L TG+ W +
Sbjct: 114 TEAADAKSTPFQPYSEVFGIQRFRECELIHGRWAMLATLGALSVEWL--TGV----TWQD 167
Query: 132 AGAVEFKFAST----------RTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEA 181
AG VE S+ TL +++L++G+ E +R A
Sbjct: 168 AGKVELVDGSSYLGQPLPFSISTLIWIEVLVIGYIEFQR-------------------NA 208
Query: 182 ALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
L+ + YPGG +PLGLA D + +L EIK+ + +V
Sbjct: 209 ELDSEKRLYPGGKFFDPLGLAADPEKTAQLQLAEIKHARLAMV 251
>gi|17473828|gb|AAL38341.1| chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|21387019|gb|AAM47913.1| chlorophyll a/b-binding protein [Arabidopsis thaliana]
Length = 267
Score = 76.6 bits (187), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 82/175 (46%), Gaps = 31/175 (17%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+ P YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G+
Sbjct: 65 ESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGV 124
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 125 KFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVA------ 178
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G E E + YPGG +PLGLA D E K+KE+KNG + +
Sbjct: 179 ---------GNEPLGEAEDLLYPGGS-FDPLGLATDPEAFAELKVKELKNGRLAM 223
>gi|225440674|ref|XP_002279834.1| PREDICTED: chlorophyll a-b binding protein CP29.2, chloroplastic
[Vitis vinifera]
gi|147784938|emb|CAN77492.1| hypothetical protein VITISV_010727 [Vitis vinifera]
Length = 288
Score = 76.6 bits (187), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 62/226 (27%), Positives = 90/226 (39%), Gaps = 78/226 (34%)
Query: 52 RAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRW------------------ 93
R RP W PG P +LDGTL GD+GFDP GLG+ E L++
Sbjct: 49 RVSDRPLWFPGAVAPEWLDGTLVGDYGFDPFGLGKPAEYLQYDYDSLDQNLAKNIAGDVI 108
Query: 94 -------------------------YVQAELVHARFAMAGVAGILFTDLLRVTGIRELPV 128
+ + EL+H R+AM G L + L TG+
Sbjct: 109 GTRFEGGEVKSTPFQPYTEVFGLQRFRECELIHGRWAMLATLGALAVESL--TGV----T 162
Query: 129 WYEAGAVEFKFAST----------RTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFG 178
W +AG VE S+ TL +++L++G+ E +R
Sbjct: 163 WQDAGKVELIEGSSYLGQPLPFSMTTLIWIEVLVIGYIEFQR------------------ 204
Query: 179 LEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
A L+ + YPGG +PLGLA D +L EIK+ + ++
Sbjct: 205 -NAELDPEKRLYPGGKFFDPLGLAADPEKKAVLQLAEIKHARLAMI 249
Score = 36.6 bits (83), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 79 FDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVW 129
FDPLGL DPE AE+ HAR AM G G F VTG L W
Sbjct: 221 FDPLGLAADPEKKAVLQLAEIKHARLAMIGFLG--FAVQAAVTGKGPLNNW 269
>gi|145079335|tpg|DAA05910.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm6 [Acetabularia acetabulum]
Length = 244
Score = 76.6 bits (187), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 84/176 (47%), Gaps = 33/176 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLL-RVTG 122
D P YL G GD+G+D GL DPE+ + Y + EL+HAR+AM G G + ++L + G
Sbjct: 43 DVPSYLTGQFPGDYGWDTAGLSADPETFKAYREQELIHARWAMLGALGCVTPEILSKYAG 102
Query: 123 IR-ELPVWYEAGAVEFK--------------FASTRTLFIVQLLLMGFAETKRYMDYISP 167
+ VW++AG+ F+ S + Q++LMG E R
Sbjct: 103 VSFGESVWFKAGSQIFQEGGLDYLGNPSLVHAQSILAILGCQVVLMGLIEAYRV------ 156
Query: 168 GSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G EGL+ +P G +PLGLA D E K+KEIKNG + +
Sbjct: 157 -----NGGPLG-----EGLDVLHP-GEKFDPLGLADDPDTFAELKVKEIKNGRLAM 201
>gi|15241005|ref|NP_195773.1| chlorophyll a-b binding protein CP29.1 [Arabidopsis thaliana]
gi|38502901|sp|Q07473.1|CB4A_ARATH RecName: Full=Chlorophyll a-b binding protein CP29.1,
chloroplastic; AltName: Full=LHCB4.1; AltName:
Full=LHCII protein 4.1; Flags: Precursor
gi|298036|emb|CAA50712.1| CP29 [Arabidopsis thaliana]
gi|7327812|emb|CAB82269.1| chlorophyll a/b-binding protein CP29 [Arabidopsis thaliana]
gi|15081815|gb|AAK82562.1| AT5g01530/F7A7_50 [Arabidopsis thaliana]
gi|16323075|gb|AAL15272.1| AT5g01530/F7A7_50 [Arabidopsis thaliana]
gi|16648983|gb|AAL24343.1| chlorophyll a/b-binding protein CP29 [Arabidopsis thaliana]
gi|20148703|gb|AAM10242.1| chlorophyll a/b-binding protein CP29 [Arabidopsis thaliana]
gi|22137102|gb|AAM91396.1| At5g01530/F7A7_50 [Arabidopsis thaliana]
gi|110741014|dbj|BAE98601.1| Lhcb4- protein [Arabidopsis thaliana]
gi|332002974|gb|AED90357.1| chlorophyll a-b binding protein CP29.1 [Arabidopsis thaliana]
Length = 290
Score = 76.6 bits (187), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 61/223 (27%), Positives = 90/223 (40%), Gaps = 78/223 (34%)
Query: 55 QRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRW--------------------- 93
RP W PG P +LDG+L GD+GFDP GLG+ E L++
Sbjct: 54 DRPLWYPGAISPDWLDGSLVGDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNLAGDVIGTR 113
Query: 94 ----------------------YVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYE 131
+ + EL+H R+AM G L + L TG+ W +
Sbjct: 114 TEAADAKSTPFQPYSEVFGIQRFRECELIHGRWAMLATLGALSVEWL--TGV----TWQD 167
Query: 132 AGAVEFKFAST----------RTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEA 181
AG VE S+ TL +++L++G+ E +R A
Sbjct: 168 AGKVELVDGSSYLGQPLPFSISTLIWIEVLVIGYIEFQR-------------------NA 208
Query: 182 ALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
L+ + YPGG +PLGLA D + +L EIK+ + +V
Sbjct: 209 ELDSEKRLYPGGKFFDPLGLAADPEKTAQLQLAEIKHARLAMV 251
>gi|302807871|ref|XP_002985629.1| light-harvesting complex [Selaginella moellendorffii]
gi|300146538|gb|EFJ13207.1| light-harvesting complex [Selaginella moellendorffii]
Length = 299
Score = 76.6 bits (187), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 63/224 (28%), Positives = 90/224 (40%), Gaps = 79/224 (35%)
Query: 55 QRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYV------------------- 95
RP W PG P YLDG+L GD+GFDPLGLG+ P L++ V
Sbjct: 63 NRPLWFPGAKCPDYLDGSLVGDYGFDPLGLGKPPTYLQFDVDSLDSSLAKNMPGELLGER 122
Query: 96 -------------------------QAELVHARFAMAGVAGILFTDLLRVTGIRELPVWY 130
+ EL+H R+AM G + + TG+ W
Sbjct: 123 VEDLSTIRATPLQPYTEIFGLQRFRECELIHGRWAMLATLGAIAVETF--TGV----TWQ 176
Query: 131 EAGAVE-------FKFA---STRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLE 180
+AG VE F F+ + L +++L++GF E +R + + P +
Sbjct: 177 DAGKVELDQGPSYFGFSLPFTITALVWIEVLVIGFIEFQRNTE-LDPEKRL--------- 226
Query: 181 AALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
YPGG +PLGLA D KL EIK+ + +V
Sbjct: 227 ---------YPGGSYFDPLGLAADPERKEVLKLAEIKHARLAMV 261
>gi|302784975|ref|XP_002974259.1| light-harvesting complex [Selaginella moellendorffii]
gi|300157857|gb|EFJ24481.1| light-harvesting complex [Selaginella moellendorffii]
Length = 299
Score = 76.6 bits (187), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 63/224 (28%), Positives = 90/224 (40%), Gaps = 79/224 (35%)
Query: 55 QRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYV------------------- 95
RP W PG P YLDG+L GD+GFDPLGLG+ P L++ V
Sbjct: 63 NRPLWFPGAKCPDYLDGSLVGDYGFDPLGLGKPPTYLQFDVDSLDSSLAKNMPGELLGER 122
Query: 96 -------------------------QAELVHARFAMAGVAGILFTDLLRVTGIRELPVWY 130
+ EL+H R+AM G + + TG+ W
Sbjct: 123 VEDLSTIRATPLQPYTEIFGLQRFRECELIHGRWAMLATLGAIAVETF--TGV----TWQ 176
Query: 131 EAGAVE-------FKFA---STRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLE 180
+AG VE F F+ + L +++L++GF E +R + + P +
Sbjct: 177 DAGKVELDQGPSYFGFSLPFTITALVWIEVLVIGFIEFQRNTE-LDPEKRL--------- 226
Query: 181 AALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
YPGG +PLGLA D KL EIK+ + +V
Sbjct: 227 ---------YPGGSYFDPLGLAADPERKEVLKLAEIKHARLAMV 261
>gi|359807444|ref|NP_001240880.1| uncharacterized protein LOC100779387 [Glycine max]
gi|255646132|gb|ACU23552.1| unknown [Glycine max]
Length = 268
Score = 76.6 bits (187), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 81/175 (46%), Gaps = 34/175 (19%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRV---TG 122
P YL G GD+G+D GL DPE+ E++H R+AM G G + ++L
Sbjct: 67 PSYLKGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWLRVD 126
Query: 123 IRELPVWYEAGAVEF-----------KFASTRTLFIV---QLLLMGFAETKRYMDYISPG 168
+E PVW++AGA F +++ V Q++LMG E R
Sbjct: 127 FKE-PVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVILMGLVEGYR-------- 177
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
GL+ EG + YPGG +PLGLA D E K+KEIKNG + +
Sbjct: 178 -------INGLDGVGEGNDL-YPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAM 224
>gi|20218821|emb|CAC84495.1| putative chlorophyll A-B binding protein type I [Pinus pinaster]
Length = 195
Score = 76.6 bits (187), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 57/155 (36%), Positives = 78/155 (50%), Gaps = 14/155 (9%)
Query: 75 GDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR-ELPVWYEAG 133
GD+G+D GL DPE+ + E++H R+AM G G +F +LL G++ VW++AG
Sbjct: 5 GDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAKNGVKFGEAVWFKAG 64
Query: 134 AVEFK-----FASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEP 188
A F + L Q +L +A M I EG G EGL+P
Sbjct: 65 AQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGLI-------EGYRVGGGPLGEGLDP 117
Query: 189 GYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
YPGG +PLGLA D E K+KEIKNG + +
Sbjct: 118 LYPGGA-FDPLGLADDPEAFAELKVKEIKNGRLAM 151
>gi|297792877|ref|XP_002864323.1| light-harvesting chlorophyll binding protein 3 [Arabidopsis lyrata
subsp. lyrata]
gi|297310158|gb|EFH40582.1| light-harvesting chlorophyll binding protein 3 [Arabidopsis lyrata
subsp. lyrata]
Length = 265
Score = 76.6 bits (187), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 58/177 (32%), Positives = 83/177 (46%), Gaps = 32/177 (18%)
Query: 63 VDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLR--V 120
V P YL G GD+G+D GL DPE+ E++H R+AM G G + ++L+ V
Sbjct: 61 VQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVLQKWV 120
Query: 121 TGIRELPVWYEAGAVEF-----------KFASTRTLFIV---QLLLMGFAETKRYMDYIS 166
+ PVW++AG+ F +++ V Q++LMG E R
Sbjct: 121 RVDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVILMGLVEGFRIN---- 176
Query: 167 PGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
GL+ EG + YPGG +PLGLA D E K+KEIKNG + +
Sbjct: 177 -----------GLDGVGEGNDL-YPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAM 221
>gi|170404|gb|AAA34148.1| chlorophyll a/b-binding protein Cab-3C [Solanum lycopersicum]
Length = 267
Score = 76.6 bits (187), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 57/175 (32%), Positives = 82/175 (46%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+ P YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 66 ESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 125
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 126 KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIA------ 179
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E ++P YPGG +PLG A D E K+KEIKNG + +
Sbjct: 180 -----GGPLG-----EVVDPLYPGGS-FDPLGPADDPEAFAELKVKEIKNGRLAM 223
>gi|160713967|gb|ABX47019.1| chloroplast chlorophyll a/b binding protein cab-BO3-1 [Bambusa
oldhamii]
Length = 267
Score = 76.6 bits (187), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 58/174 (33%), Positives = 81/174 (46%), Gaps = 32/174 (18%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLR--VTGI 123
P YL G AGD+G+D GL DPE+ E++H R+AM G G + ++L V
Sbjct: 66 PSYLTGEFAGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWVRVD 125
Query: 124 RELPVWYEAGAVEF-----------KFASTRTLFIV---QLLLMGFAETKRYMDYISPGS 169
+ PVW++AGA F +++ V Q++LMG E R
Sbjct: 126 FKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVILMGLVEGYR--------- 176
Query: 170 QTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
GL EG + YPGG +PLGLA D E ++KEIKNG + +
Sbjct: 177 ------INGLPGVGEGNDL-YPGGQYFDPLGLADDPVTFAELRVKEIKNGRLAM 223
>gi|449460307|ref|XP_004147887.1| PREDICTED: chlorophyll a-b binding protein CP29.2,
chloroplastic-like [Cucumis sativus]
gi|449516143|ref|XP_004165107.1| PREDICTED: chlorophyll a-b binding protein CP29.2,
chloroplastic-like [Cucumis sativus]
Length = 284
Score = 76.3 bits (186), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 61/223 (27%), Positives = 90/223 (40%), Gaps = 78/223 (34%)
Query: 55 QRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRW--------------------- 93
RP W PG P +LDG+L GD+GFDP GLG+ E L++
Sbjct: 49 DRPLWFPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDIIGTR 108
Query: 94 ----------------------YVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYE 131
+ + EL+H R+AM G L + L TG+ W +
Sbjct: 109 FESAEVKSTPFQPYTEVFGLQRFRECELIHGRWAMLATLGALSVEWL--TGV----TWQD 162
Query: 132 AGAVEFKFAST----------RTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEA 181
AG VE S+ TL +++L++G+ E +R A
Sbjct: 163 AGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQR-------------------NA 203
Query: 182 ALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
L+ + YPGG +PLGLA+D +L EIK+ + +V
Sbjct: 204 ELDPEKRLYPGGKFFDPLGLAEDPEKKAVLQLAEIKHARLAMV 246
Score = 37.4 bits (85), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 79 FDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVW 129
FDPLGL EDPE AE+ HAR AM G F VTG L W
Sbjct: 218 FDPLGLAEDPEKKAVLQLAEIKHARLAMVAFLG--FAVQAAVTGKGPLNNW 266
>gi|15239602|ref|NP_200238.1| light-harvesting chlorophyll B-binding protein 3 [Arabidopsis
thaliana]
gi|4741952|gb|AAD28773.1|AF134126_1 Lhcb3 protein [Arabidopsis thaliana]
gi|5002210|gb|AAD37362.1|AF143691_1 type III chlorophyll a/b binding protein [Arabidopsis thaliana]
gi|13605754|gb|AAK32870.1|AF361858_1 AT5g54270/MDK4_9 [Arabidopsis thaliana]
gi|13926339|gb|AAK49633.1|AF372917_1 AT5g54270/MDK4_9 [Arabidopsis thaliana]
gi|9759500|dbj|BAB10750.1| Lhcb3 chlorophyll a/b binding protein [Arabidopsis thaliana]
gi|16323262|gb|AAL15365.1| AT5g54270/MDK4_9 [Arabidopsis thaliana]
gi|332009094|gb|AED96477.1| light-harvesting chlorophyll B-binding protein 3 [Arabidopsis
thaliana]
Length = 265
Score = 76.3 bits (186), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 58/177 (32%), Positives = 83/177 (46%), Gaps = 32/177 (18%)
Query: 63 VDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLR--V 120
V P YL G GD+G+D GL DPE+ E++H R+AM G G + ++L+ V
Sbjct: 61 VQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVLQKWV 120
Query: 121 TGIRELPVWYEAGAVEF-----------KFASTRTLFIV---QLLLMGFAETKRYMDYIS 166
+ PVW++AG+ F +++ V Q++LMG E R
Sbjct: 121 RVDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVILMGLVEGFRIN---- 176
Query: 167 PGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
GL+ EG + YPGG +PLGLA D E K+KEIKNG + +
Sbjct: 177 -----------GLDGVGEGNDL-YPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAM 221
>gi|359806176|ref|NP_001241200.1| uncharacterized protein LOC100790960 [Glycine max]
gi|255635333|gb|ACU18020.1| unknown [Glycine max]
Length = 267
Score = 76.3 bits (186), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 81/175 (46%), Gaps = 34/175 (19%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRV---TG 122
P YL G GD+G+D GL DPE+ E++H R+AM G G + ++L
Sbjct: 66 PSYLKGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWLRVD 125
Query: 123 IRELPVWYEAGAVEF-----------KFASTRTLFIV---QLLLMGFAETKRYMDYISPG 168
+E PVW++AGA F +++ V Q++LMG E R
Sbjct: 126 FKE-PVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVILMGLVEGYR-------- 176
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
GL+ EG + YPGG +PLGLA D E K+KEIKNG + +
Sbjct: 177 -------INGLDGVGEGNDL-YPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAM 223
>gi|312281753|dbj|BAJ33742.1| unnamed protein product [Thellungiella halophila]
Length = 265
Score = 76.3 bits (186), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 58/177 (32%), Positives = 82/177 (46%), Gaps = 32/177 (18%)
Query: 63 VDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTG 122
V P YL G GD+G+D GL DPE+ E++H R+AM G G + ++L+
Sbjct: 61 VQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVLQKWV 120
Query: 123 IREL--PVWYEAGAVEF-----------KFASTRTLFIV---QLLLMGFAETKRYMDYIS 166
E PVW++AG+ F +++ V Q++LMG E R
Sbjct: 121 RVEFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVILMGLVEGFRIN---- 176
Query: 167 PGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
GL+ EG + YPGG +PLGLA D E K+KEIKNG + +
Sbjct: 177 -----------GLDGVGEGNDL-YPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAM 221
>gi|145079356|tpg|DAA05911.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm5 [Acetabularia acetabulum]
Length = 244
Score = 76.3 bits (186), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 84/176 (47%), Gaps = 33/176 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLL-RVTG 122
D P YL G GD+G+D GL DPE+ + Y + EL+HAR+AM G G + ++L + G
Sbjct: 43 DVPSYLTGEFPGDYGWDTAGLSADPETFKAYREQELIHARWAMLGALGCVTPEILSKYAG 102
Query: 123 IR-ELPVWYEAGAVEFK--------------FASTRTLFIVQLLLMGFAETKRYMDYISP 167
+ VW++AG+ F+ S + Q++LMG E R
Sbjct: 103 VSFGESVWFKAGSQIFQEGGLDYLGNPSLVHAQSILAILGCQVVLMGLIEAYRV------ 156
Query: 168 GSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G EGL+ +P G +PLGLA D E K+KEIKNG + +
Sbjct: 157 -----NGGPLG-----EGLDVLHP-GEKFDPLGLADDPDTFAELKVKEIKNGRLAM 201
>gi|156890566|gb|ABU96693.1| chloroplast chlorophyll a/b binding protein [Phyllostachys edulis]
Length = 267
Score = 76.3 bits (186), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 58/174 (33%), Positives = 81/174 (46%), Gaps = 32/174 (18%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLR--VTGI 123
P YL G GD+G+D GL DPE+ E++H R+AM G G + ++L+ V
Sbjct: 66 PSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLQKWVRVS 125
Query: 124 RELPVWYEAGAVEF-----------KFASTRTLFIV---QLLLMGFAETKRYMDYISPGS 169
+ PVW++AGA F +++ V Q++LMG E R
Sbjct: 126 FKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVILMGLVEGYR--------- 176
Query: 170 QTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
GL EG + YPGG +PLGLA D E K+KEIKNG + +
Sbjct: 177 ------INGLPGVGEGNDL-YPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAM 223
>gi|22750|emb|CAA78900.1| Lhcb5 protein [Pinus sylvestris]
gi|1093837|prf||2104448A Lhcb5 gene
Length = 302
Score = 76.3 bits (186), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 54/162 (33%), Positives = 79/162 (48%), Gaps = 10/162 (6%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
D P YL+G + GD+G+DP GLG PE+ Y EL+HAR+AM G AG + + G
Sbjct: 102 DIPEYLNGEVPGDYGYDPFGLGRKPENFDKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 161
Query: 124 RELP--VWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEA 181
P VW++ GA+ T + F + + A + + + + +
Sbjct: 162 YCGPEAVWFKTGALLLD-GGTLSYFGASIPINLIAAVVAEVVLVGGAEYYRATNGLNFDD 220
Query: 182 ALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
L +PGGP +PLGLAKD K+KEIKNG + +
Sbjct: 221 KL------HPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAM 255
>gi|302800774|ref|XP_002982144.1| light-harvesting complex [Selaginella moellendorffii]
gi|300150160|gb|EFJ16812.1| light-harvesting complex [Selaginella moellendorffii]
Length = 263
Score = 76.3 bits (186), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 57/174 (32%), Positives = 80/174 (45%), Gaps = 32/174 (18%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLL-RVTGIR 124
P YL G GD+G+D GL DPE+ EL+H R+AM G G +F ++L + G+
Sbjct: 62 PSYLKGEFPGDYGWDTAGLSADPEAFARNRALELIHGRWAMLGALGCVFPEVLSKWVGVE 121
Query: 125 -ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPGS 169
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 122 FKEKVWFKAGSQIFSDGGLDYLGNPNLVHAQSILAIWACQVILMGLVEGYRIN------- 174
Query: 170 QTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
GL EG + YPGG +PLG A D E K+KEIKNG + +
Sbjct: 175 --------GLPDVGEGGDL-YPGGQYFDPLGFADDPETLAELKVKEIKNGRLAM 219
>gi|157965831|gb|ABW06952.1| chloroplast light-harvesting complex I protein precursor [Euglena
gracilis]
Length = 786
Score = 76.3 bits (186), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 83/187 (44%), Gaps = 32/187 (17%)
Query: 40 SGTTRRYLATVVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAEL 99
+ TT +A A +R TW PG PP+L G GD GFDP+ +PES +E+
Sbjct: 237 AATTGGSVAMFAAAGERATWFPGAKAPPHLTGEFPGDRGFDPVDFAANPESFERMRASEV 296
Query: 100 VHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETK 159
H R AM GVAG L +LL VW++AG ++ QL L
Sbjct: 297 FHGRMAMLGVAGCLIPELLGRG------VWFQAG---------ESVDAAQLGLY------ 335
Query: 160 RYMDYISPGSQTKEGSFFGLEAALE--GLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIK 217
+M +P + FG + + G YPG +PL + D E K KEIK
Sbjct: 336 -FMFLAAPSEYWRGNGGFGWDQKEKKAGGNRIYPG---FDPLKMTSD-----ETKTKEIK 386
Query: 218 NGLICLV 224
NG + ++
Sbjct: 387 NGRLAMI 393
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 60/188 (31%), Positives = 84/188 (44%), Gaps = 35/188 (18%)
Query: 40 SGTTRRYLATVVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAEL 99
+ TT +A A +R TW PG PP+L G GD GFDP+ +PES +E+
Sbjct: 599 AATTGGSVAMFAAAGERATWFPGAKAPPHLTGEFPGDRGFDPVDFAANPESFERMRASEV 658
Query: 100 VHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETK 159
H R AM GVAG L +LL VW++AG ++ QL L
Sbjct: 659 FHGRMAMLGVAGCLIPELLGRG------VWFQAG---------ESVDAAQLGLY------ 697
Query: 160 RYMDYISPGSQTKEGSFFGLEAALEGLEPG---YPGGPLLNPLGLAKDIRNAREWKLKEI 216
+M +P + FG + + + G YPG +PL + D E K KEI
Sbjct: 698 -FMFLAAPSEYWRGNGGFGWDQKEK--KAGNRIYPG---FDPLKMTSD-----ETKTKEI 746
Query: 217 KNGLICLV 224
KNG + ++
Sbjct: 747 KNGRLAMI 754
Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 38/64 (59%)
Query: 54 QQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGIL 113
++RP W PG PP YL G D GFDPLGL +DP + +E+ H+R AM GV G L
Sbjct: 68 EKRPVWFPGATPPAYLTGEFPADRGFDPLGLAKDPATYERMRSSEVFHSRLAMLGVVGSL 127
Query: 114 FTDL 117
+L
Sbjct: 128 IPEL 131
Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 38/64 (59%)
Query: 54 QQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGIL 113
++RP W PG PP YL G D GFDPLGL +DP + +E+ H+R AM GV G L
Sbjct: 430 EKRPVWFPGATPPAYLTGEFPADRGFDPLGLAKDPATYERMRSSEVFHSRLAMLGVVGSL 489
Query: 114 FTDL 117
+L
Sbjct: 490 IPEL 493
>gi|156890564|gb|ABU96692.1| chloroplast chlorophyll a/b binding protein [Phyllostachys edulis]
Length = 267
Score = 76.3 bits (186), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 58/174 (33%), Positives = 81/174 (46%), Gaps = 32/174 (18%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLR--VTGI 123
P YL G GD+G+D GL DPE+ E++H R+AM G G + ++L+ V
Sbjct: 66 PSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLQKWVRVS 125
Query: 124 RELPVWYEAGAVEF-----------KFASTRTLFIV---QLLLMGFAETKRYMDYISPGS 169
+ PVW++AGA F +++ V Q++LMG E R
Sbjct: 126 FKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVILMGLVEGYR--------- 176
Query: 170 QTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
GL EG + YPGG +PLGLA D E K+KEIKNG + +
Sbjct: 177 ------INGLPGVGEGNDL-YPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAM 223
>gi|302765457|ref|XP_002966149.1| light-harvesting complex [Selaginella moellendorffii]
gi|300165569|gb|EFJ32176.1| light-harvesting complex [Selaginella moellendorffii]
Length = 263
Score = 76.3 bits (186), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 57/174 (32%), Positives = 80/174 (45%), Gaps = 32/174 (18%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLL-RVTGIR 124
P YL G GD+G+D GL DPE+ EL+H R+AM G G +F ++L + G+
Sbjct: 62 PSYLKGEFPGDYGWDTAGLSADPEAFARNRALELIHGRWAMLGALGCVFPEVLSKWVGVE 121
Query: 125 -ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPGS 169
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 122 FKEKVWFKAGSQIFSDGGLDYLGNPNLVHAQSILAIWACQVILMGLVEGYRIN------- 174
Query: 170 QTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
GL EG + YPGG +PLG A D E K+KEIKNG + +
Sbjct: 175 --------GLPDVGEGGDL-YPGGQYFDPLGFADDPETLAELKVKEIKNGRLAM 219
>gi|226358407|gb|ACO51066.1| chloroplast chlorophyll A-B binding protein [Gossypium hirsutum]
Length = 240
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/156 (34%), Positives = 76/156 (48%), Gaps = 10/156 (6%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRE 125
P YL+G + GD+G+DP GL + PE Y EL+HAR+AM G AG + + G
Sbjct: 93 PEYLNGEVPGDYGYDPFGLSKKPEDFAKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 152
Query: 126 LP--VWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAAL 183
P VW++ GA+ +T F + + + + + + LE L
Sbjct: 153 GPEAVWFKTGALLLD-GNTLNYFGKNIPINLVVAVVAEVVLVGGAEYYRIINGLDLEDKL 211
Query: 184 EGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNG 219
+PGGP +PLGLAKD A K+KEIKNG
Sbjct: 212 ------HPGGP-FDPLGLAKDPDQAALLKVKEIKNG 240
>gi|356552039|ref|XP_003544379.1| PREDICTED: LOW QUALITY PROTEIN: chlorophyll a-b binding protein 4,
chloroplastic-like [Glycine max]
Length = 274
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 79/176 (44%), Gaps = 16/176 (9%)
Query: 57 PTWLPGVDP--PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILF 114
P WL + P YL G + GD+ FD +GLG+DP L Y E++HAR+ +
Sbjct: 77 PPWLGSISYKYPSYLTGEMPGDYDFDIVGLGQDPVELXKYFNFEILHARWVTLAFVSAVI 136
Query: 115 TDLLRVTGIREL--PVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTK 172
+L + G PVW+ AG + K + L I L L G ++ + Q
Sbjct: 137 PKILNLLGAVHFVEPVWWRAGYSKLKVNTLDYLRIQGLHLAG-SQGAVVIAICQILKQV- 194
Query: 173 EGSFFGLEAALEGLEP---------GYPGGPLLNPLGLAKDIRNAREWKLKEIKNG 219
G + E L+P YPGG L +PL L+ D E K+KE+KNG
Sbjct: 195 -GPEYARXCGTEALKPLGIYLPCDINYPGGALFDPLNLSNDPEAFEELKVKEVKNG 249
>gi|115808|sp|P04783.1|CB25_PETSP RecName: Full=Chlorophyll a-b binding protein 91R, chloroplastic;
AltName: Full=LHCII type I CAB-91R; Short=LHCP; Flags:
Precursor
gi|20487|emb|CAA26209.1| unnamed protein product [Petunia sp.]
Length = 267
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/175 (32%), Positives = 82/175 (46%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+ P YL G GD+G+D L DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 66 EAPSYLTGEFPGDYGWDTAELSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 125
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 126 KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVA------ 179
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E ++P YPGG +PLGLA D E K+KEIKNG + +
Sbjct: 180 -----GGPLG-----EVVDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAM 223
>gi|168053458|ref|XP_001779153.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669412|gb|EDQ55999.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 213
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 65/206 (31%), Positives = 88/206 (42%), Gaps = 41/206 (19%)
Query: 38 AKSGTTRRYLATVVRAQQRPTWL-PGVDP---PPYLDGTLAGDFGFDPLGLGEDPESLRW 93
A S TR T RP W P P P YL G GD+G D L PE+
Sbjct: 4 APSQDTR----TAYYGPNRPLWKGPFTSPKDVPEYLKGEYPGDYGCDIFKLVRLPENYAK 59
Query: 94 YVQAELVHARFAMAGVAGILFTDLLRVTGIREL-PVWYEAGAVEFKFA------------ 140
EL++ R+AM G+ G L +L+ PVW++ GA F A
Sbjct: 60 LRSQELMNGRWAMLGITGCLVPELINSNPTPGFEPVWFKTGAQIFSEAGIDYLGVPGFIN 119
Query: 141 --STRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNP 198
S + +VQ LLMG AE R ++ + EG + YPGG +P
Sbjct: 120 AHSLVAVIVVQALLMGVAEYAR------------------IKLSPEGNDAFYPGGKAFDP 161
Query: 199 LGLAKDIRNAREWKLKEIKNGLICLV 224
LG + D + E K+KEIKNG + ++
Sbjct: 162 LGFSSDPESFAELKVKEIKNGRLAMM 187
>gi|226358411|gb|ACO51068.1| chloroplast chlorophyll A-B binding protein [Gossypium hirsutum]
Length = 285
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 62/226 (27%), Positives = 90/226 (39%), Gaps = 78/226 (34%)
Query: 52 RAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRW------------------ 93
+ RP W PG P +LDG+L GD+GFDP GLG+ E L++
Sbjct: 47 QTSDRPLWYPGAVAPDWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNMAGEII 106
Query: 94 -------------------------YVQAELVHARFAMAGVAGILFTDLLRVTGIRELPV 128
+ + EL+H R+AM G L + L TG+
Sbjct: 107 GTRTEVADVKATPFQPYSEVFGLQRFRECELIHGRWAMLATLGALTVEWL--TGV----T 160
Query: 129 WYEAGAVEFKFAST----------RTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFG 178
W +AG VE S+ TL +++L++GF E +R
Sbjct: 161 WQDAGKVELVEGSSYLGQPLPFSMTTLIWIEVLVIGFIEFQR------------------ 202
Query: 179 LEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
A L+ + YPGG +PLGLA D +L EIK+ + +V
Sbjct: 203 -NAELDPEKRLYPGGKYFDPLGLAADPEKKATLQLAEIKHARLAMV 247
>gi|255569585|ref|XP_002525758.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223534908|gb|EEF36594.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 268
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 58/174 (33%), Positives = 81/174 (46%), Gaps = 32/174 (18%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLR--VTGI 123
P YL+G GD+G+D GL DPE+ E++H R+AM G G + ++L V
Sbjct: 67 PSYLNGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWVKVD 126
Query: 124 RELPVWYEAGAVEF-----------KFASTRTLFIV---QLLLMGFAETKRYMDYISPGS 169
+ PVW++AGA F +++ V Q++LMG E R
Sbjct: 127 FKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFR--------- 177
Query: 170 QTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
GL EG + YPGG +PLGLA D E K+KEIKNG + +
Sbjct: 178 ------INGLPGVGEGNDL-YPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAM 224
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.322 0.140 0.430
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,862,131,949
Number of Sequences: 23463169
Number of extensions: 166806257
Number of successful extensions: 354764
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 1307
Number of HSP's successfully gapped in prelim test: 262
Number of HSP's that attempted gapping in prelim test: 350275
Number of HSP's gapped (non-prelim): 2837
length of query: 226
length of database: 8,064,228,071
effective HSP length: 137
effective length of query: 89
effective length of database: 9,144,741,214
effective search space: 813881968046
effective search space used: 813881968046
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 74 (33.1 bits)