BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027238
(226 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2WSC|2 Chain 2, Improved Model Of Plant Photosystem I
pdb|2WSE|2 Chain 2, Improved Model Of Plant Photosystem I
pdb|2WSF|2 Chain 2, Improved Model Of Plant Photosystem I
Length = 269
Score = 149 bits (375), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 80/154 (51%), Positives = 97/154 (62%), Gaps = 11/154 (7%)
Query: 25 NKSSIGITSAFLPAK--------SGTTRRYLATV--VRAQQRPTWLPGVDPPPYLDGTLA 74
N S G + AFL K S + R +TV V RP W PG PPP+LDG+L
Sbjct: 23 NGSPSGTSKAFLGRKLKVNSSTASPSRVRSTSTVCTVAEPDRPLWFPGSTPPPWLDGSLP 82
Query: 75 GDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGA 134
GDFGFDPLGLG DPESLRW VQAELVH+R+AM G AGI + L GI P WY AG
Sbjct: 83 GDFGFDPLGLGSDPESLRWNVQAELVHSRWAMLGAAGIFIPEFLTKLGILNTPSWYTAGE 142
Query: 135 VEFKFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
E+ F T TLFIV+L+ +G+AE +R+ D ++PG
Sbjct: 143 QEY-FTDTTTLFIVELVFIGWAEGRRWADILNPG 175
>pdb|2WSC|4 Chain 4, Improved Model Of Plant Photosystem I
pdb|2WSE|4 Chain 4, Improved Model Of Plant Photosystem I
pdb|2WSF|4 Chain 4, Improved Model Of Plant Photosystem I
Length = 251
Score = 131 bits (330), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 69/157 (43%), Positives = 96/157 (61%), Gaps = 11/157 (7%)
Query: 30 GITSAFLPAKSGTTRRYLA----------TVVRAQQRPTWLPGVDPPPYLDGTLAGDFGF 79
G+ S FL SG R +A + ++ WLPG+ P YL G+L GD GF
Sbjct: 17 GLKSRFLGGSSGKLNRGVAFRPVGCSPSASFKVEAKKGEWLPGLASPGYLTGSLPGDNGF 76
Query: 80 DPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKF 139
DPLGL EDPE+LRW+VQAELV+ R+AM GVAG+L ++ GI +P WY AG E+ F
Sbjct: 77 DPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGIINVPKWYAAGKEEY-F 135
Query: 140 ASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSF 176
AS+ TLF+++ +L + E +R+ D +PGS ++ F
Sbjct: 136 ASSSTLFVIEFILSHYVEIRRWQDIKNPGSVNQDPIF 172
>pdb|2O01|2 Chain 2, The Structure Of A Plant Photosystem I Supercomplex At 3.4
Angstrom Resolution
Length = 186
Score = 124 bits (312), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 61/111 (54%), Positives = 76/111 (68%), Gaps = 1/111 (0%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRE 125
P +LDG+L GDFGFDPLGL DPESLRW VQAELVH+R+AM G AGI + L GI
Sbjct: 1 PEWLDGSLPGDFGFDPLGLSSDPESLRWNVQAELVHSRWAMLGAAGIFIPEFLTKLGILN 60
Query: 126 LPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSF 176
P WY AG E+ F T TLFIV+L+ +G+AE +R+ D ++PG + F
Sbjct: 61 TPSWYTAGEQEY-FTDTTTLFIVELVFIGWAEGRRWADILNPGCVNTDPIF 110
>pdb|2WSC|3 Chain 3, Improved Model Of Plant Photosystem I
pdb|2WSE|3 Chain 3, Improved Model Of Plant Photosystem I
pdb|2WSF|3 Chain 3, Improved Model Of Plant Photosystem I
Length = 276
Score = 97.1 bits (240), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 73/233 (31%), Positives = 108/233 (46%), Gaps = 25/233 (10%)
Query: 14 SSSSSFICNDVNKSSIGITSAFLPAKSGTTRRYLAT------VVRAQQRPTWLPGVDPPP 67
SSSS + + S+G S P +L V + RP W
Sbjct: 8 SSSSLTFSAEAARQSLGPRSLQSPFGFSRKASFLVKAAATPPVKQGSDRPLWFASKQSLS 67
Query: 68 YLDGTLAGDFGFDPLGLGEDPESL------RWYVQAELVHARFAMAGVAGILFTDLLRVT 121
YLDG+L GD+GFDPLGL DPE +W E+++ R+AM G G + ++L
Sbjct: 68 YLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEIINGRYAMLGAVGAIAPEILGKA 126
Query: 122 GI----RELPVWYEAG----AVEFKF-ASTRTLFIVQLLLMGFAETKRYMDYISPGSQTK 172
G+ LP W+ G A + + A + TLF+ ++ LMGFAE +R+ D+ PGS K
Sbjct: 127 GLIPQETALP-WFRTGFIPPAGTYNYWADSYTLFVFEMALMGFAEHRRFQDWAKPGSMGK 185
Query: 173 EGSFFGLEAAXXXXXXXXXXXXX-XXXXXXAKDIRNAREWKLKEIKNGLICLV 224
+ F GLE KD ++ ++ KLKE+KNG + ++
Sbjct: 186 Q-YFLGLEKGLGGSGEPAYPGGPFFNPLGFGKDEKSLKDLKLKEVKNGRLAML 237
Score = 30.0 bits (66), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 79 FDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
F+PLG G+D +SL+ E+ + R AM + G L VTG+
Sbjct: 209 FNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGYFVQAL--VTGV 251
>pdb|3LW5|4 Chain 4, Improved Model Of Plant Photosystem I
Length = 166
Score = 94.4 bits (233), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 44/93 (47%), Positives = 64/93 (68%), Gaps = 1/93 (1%)
Query: 84 LGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTR 143
L EDPE+LRW+VQAELV+ R+AM GVAG+L ++ GI +P WY AG E+ FAS+
Sbjct: 1 LAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGIINVPKWYAAGKEEY-FASSS 59
Query: 144 TLFIVQLLLMGFAETKRYMDYISPGSQTKEGSF 176
TLF+++ +L + E +R+ D +PGS ++ F
Sbjct: 60 TLFVIEFILSHYVEIRRWQDIKNPGSVNQDPIF 92
>pdb|3LW5|2 Chain 2, Improved Model Of Plant Photosystem I
Length = 176
Score = 93.2 bits (230), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 46/90 (51%), Positives = 59/90 (65%), Gaps = 1/90 (1%)
Query: 87 DPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLF 146
DPESLRW VQAELVH+R+AM G AGI + L GI P WY AG E+ F T TLF
Sbjct: 2 DPESLRWNVQAELVHSRWAMLGAAGIFIPEFLTKLGILNTPSWYTAGEQEY-FTDTTTLF 60
Query: 147 IVQLLLMGFAETKRYMDYISPGSQTKEGSF 176
IV+L+ +G+AE +R+ D ++PG + F
Sbjct: 61 IVELVFIGWAEGRRWADILNPGCVNTDPIF 90
>pdb|2O01|4 Chain 4, The Structure Of A Plant Photosystem I Supercomplex At 3.4
Angstrom Resolution
Length = 165
Score = 88.2 bits (217), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 41/89 (46%), Positives = 61/89 (68%), Gaps = 1/89 (1%)
Query: 88 PESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFI 147
PE+LRW+VQAELV+ R+AM GVAG+L ++ GI +P WY AG E+ FAS+ TLF+
Sbjct: 1 PENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGIINVPKWYAAGKEEY-FASSSTLFV 59
Query: 148 VQLLLMGFAETKRYMDYISPGSQTKEGSF 176
++ +L + E +R+ D +PGS ++ F
Sbjct: 60 IEFILSHYVEIRRWQDIKNPGSVNQDPIF 88
>pdb|2WSC|1 Chain 1, Improved Model Of Plant Photosystem I
pdb|2WSE|1 Chain 1, Improved Model Of Plant Photosystem I
pdb|2WSF|1 Chain 1, Improved Model Of Plant Photosystem I
Length = 241
Score = 86.3 bits (212), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 59/192 (30%), Positives = 86/192 (44%), Gaps = 27/192 (14%)
Query: 40 SGTTRRYLATVVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAEL 99
+G V R + W+PG P YLDG+ GDFGFDPLGLGE P +L Y ++EL
Sbjct: 29 AGVPLPNAGNVGRIRMAAHWMPGEPRPAYLDGSAPGDFGFDPLGLGEVPANLERYKESEL 88
Query: 100 VHARFAMAGVAGILFTDLLRVTGIRELPVW--YEAGAVEF-----KFASTRTLFIVQLLL 152
+H R+AM V GIL + L + W G + + + T+ ++ L
Sbjct: 89 IHCRWAMLAVPGILVPEALGYGNWVKAQEWAALPGGQATYLGNPVPWGTLPTILAIEFLA 148
Query: 153 MGFAETKRYMDYISPGSQTKEGSFFGLEAAXXXXXXXXXXXXXXXXXXXAKDIRNAREWK 212
+ F E +R M+ + G+F L +KD + E K
Sbjct: 149 IAFVEHQRSMEKDPEKKKYPGGAFDPL--------------------GYSKDPKKLEELK 188
Query: 213 LKEIKNGLICLV 224
+KEIKNG + L+
Sbjct: 189 VKEIKNGRLALL 200
>pdb|2O01|1 Chain 1, The Structure Of A Plant Photosystem I Supercomplex At 3.4
Angstrom Resolution
Length = 187
Score = 80.9 bits (198), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 55/172 (31%), Positives = 80/172 (46%), Gaps = 27/172 (15%)
Query: 60 LPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLR 119
+PG P YLDG+ GDFGFDPLGLGE P +L Y ++EL+H R+AM V GIL + L
Sbjct: 1 MPGEPRPAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALG 60
Query: 120 VTGIRELPVW--YEAGAVEF-----KFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTK 172
+ W G + + + T+ ++ L + F E +R M+ +
Sbjct: 61 YGNWVKAQEWAALPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRSMEKDPEKKKYP 120
Query: 173 EGSFFGLEAAXXXXXXXXXXXXXXXXXXXAKDIRNAREWKLKEIKNGLICLV 224
G+F L +KD + E K+KEIKNG + L+
Sbjct: 121 GGAFDPL--------------------GYSKDPKKLEELKVKEIKNGRLALL 152
>pdb|3LW5|3 Chain 3, Improved Model Of Plant Photosystem I
Length = 172
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 73/154 (47%), Gaps = 11/154 (7%)
Query: 80 DPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI---RELPVWYEAGAVE 136
DP G G E RW E+++ RFAM G G + + L G+ W++ G +
Sbjct: 2 DPEGTGGFIEP-RWLAYGEVINGRFAMLGAVGAIAPEYLGKVGLIPQETALAWFQTGVIP 60
Query: 137 -----FKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAAXXXXXX-XX 190
+A TLF++++ LMGFAE +R+ D+ PGS K+ F GLE
Sbjct: 61 PAGTYNYWADNYTLFVLEMALMGFAEHRRFQDWAKPGSMGKQ-YFLGLEKGFGGSGNPAY 119
Query: 191 XXXXXXXXXXXAKDIRNAREWKLKEIKNGLICLV 224
KD ++ +E KLKE+KNG + ++
Sbjct: 120 PGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAML 153
Score = 30.8 bits (68), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 79 FDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
F+PLG G+D +SL+ E+ + R AM + G L VTG+
Sbjct: 125 FNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQGL--VTGV 167
>pdb|2O01|3 Chain 3, The Structure Of A Plant Photosystem I Supercomplex At 3.4
Angstrom Resolution
Length = 165
Score = 68.6 bits (166), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 71/142 (50%), Gaps = 12/142 (8%)
Query: 93 WYVQAELVHARFAMAGVAGILFTDLLRVTGI----RELPVWYEAGAVE-----FKFASTR 143
W E+++ RFAM G AG + ++L G+ LP W++ G + +A
Sbjct: 1 WLAYGEIINGRFAMLGAAGAIAPEILGKAGLIPAETALP-WFQTGVIPPAGTYTYWADNY 59
Query: 144 TLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAAXXXXXX-XXXXXXXXXXXXXA 202
TLF++++ LMGFAE +R D+ +PGS K+ F GLE
Sbjct: 60 TLFVLEMALMGFAEHRRLQDWYNPGSMGKQ-YFLGLEKGLAGSGNPAYPGGPFFNPLGFG 118
Query: 203 KDIRNAREWKLKEIKNGLICLV 224
KD ++ +E KLKE+KNG + ++
Sbjct: 119 KDEKSLKELKLKEVKNGRLAML 140
Score = 30.8 bits (68), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 79 FDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
F+PLG G+D +SL+ E+ + R AM + G L VTG+
Sbjct: 112 FNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQGL--VTGV 154
>pdb|3LW5|1 Chain 1, Improved Model Of Plant Photosystem I
Length = 170
Score = 68.2 bits (165), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 71/157 (45%), Gaps = 27/157 (17%)
Query: 75 GDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVW--YEA 132
GDFGFDPLGLGE P +L Y ++EL+H R+AM V GIL + L + W
Sbjct: 4 GDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALGYGNWVKAQEWAALPG 63
Query: 133 GAVEF-----KFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAAXXXXX 187
G + + + T+ ++ L + F E +R M+ + G+F L
Sbjct: 64 GQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPL-------- 115
Query: 188 XXXXXXXXXXXXXXAKDIRNAREWKLKEIKNGLICLV 224
+KD + E K+KEIKNG + L+
Sbjct: 116 ------------GYSKDPKKLEELKVKEIKNGRLALL 140
>pdb|3PL9|A Chain A, Crystal Structure Of Spinach Minor Light-Harvesting
Complex Cp29 At 2.80 Angstrom Resolution
Length = 243
Score = 60.8 bits (146), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 66/161 (40%), Gaps = 59/161 (36%)
Query: 53 AQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRW------------------- 93
+ RP W PG P YLDG+L GD+GFDP GLG+ E L++
Sbjct: 8 STDRPLWYPGAKAPEYLDGSLVGDYGFDPFGLGKPAEYLQYDYDGLDQNLAKNLAGDIIG 67
Query: 94 ------------------------YVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVW 129
+ + EL+H R+AM G L + L TGI W
Sbjct: 68 TRTESADVKSTSLQPYSEVFGLQRFRECELIHGRWAMLATLGALTVEGL--TGI----TW 121
Query: 130 YEAGAVEFKFAST----------RTLFIVQLLLMGFAETKR 160
+AG VE S+ TL +++L++G+ E +R
Sbjct: 122 QDAGKVELIEGSSYLGQPLPFSMTTLIWIEVLVIGYIEFQR 162
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 79 FDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVW 129
FDPLGL DPE AE+ HAR AM G G F VTG L W
Sbjct: 178 FDPLGLASDPEKKPILQLAEIKHARLAMVGFLG--FAVQAAVTGKGPLNNW 226
>pdb|1VCR|A Chain A, An Icosahedral Assembly Of Light-Harvesting Chlorophyll AB
Protein Complex From Pea Thylakoid Membranes
Length = 232
Score = 60.5 bits (145), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 77/181 (42%), Gaps = 48/181 (26%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR- 124
P YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G++
Sbjct: 33 PSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGVKF 92
Query: 125 ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKR--------YM 162
VW++AG+ F S ++ Q++LMG E R +
Sbjct: 93 GEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVV 152
Query: 163 DYISPGSQTKEGSFFGLEAAXXXXXXXXXXXXXXXXXXXAKDIRNAREWKLKEIKNGLIC 222
D + PG GSF L A D E K+KE+KNG +
Sbjct: 153 DPLYPG-----GSFDPL--------------------GLADDPEAFAELKVKELKNGRLA 187
Query: 223 L 223
+
Sbjct: 188 M 188
Score = 31.2 bits (69), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 23/47 (48%)
Query: 79 FDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRE 125
FDPLGL +DPE+ EL + R AM + G ++ G E
Sbjct: 161 FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLE 207
>pdb|1RWT|A Chain A, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
pdb|1RWT|B Chain B, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
pdb|1RWT|C Chain C, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
pdb|1RWT|D Chain D, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
pdb|1RWT|E Chain E, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
pdb|1RWT|F Chain F, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
pdb|1RWT|G Chain G, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
pdb|1RWT|H Chain H, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
pdb|1RWT|I Chain I, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
pdb|1RWT|J Chain J, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
Length = 232
Score = 60.5 bits (145), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 76/181 (41%), Gaps = 48/181 (26%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR- 124
P YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G++
Sbjct: 33 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 92
Query: 125 ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKR--------YM 162
VW++AG+ F S ++ Q++LMG E R +
Sbjct: 93 GEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGEVV 152
Query: 163 DYISPGSQTKEGSFFGLEAAXXXXXXXXXXXXXXXXXXXAKDIRNAREWKLKEIKNGLIC 222
D + PG GSF L A D E K+KEIKNG +
Sbjct: 153 DPLYPG-----GSFDPL--------------------GLADDPEAFAELKVKEIKNGRLA 187
Query: 223 L 223
+
Sbjct: 188 M 188
Score = 30.4 bits (67), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 23/47 (48%)
Query: 79 FDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRE 125
FDPLGL +DPE+ E+ + R AM + G ++ G E
Sbjct: 161 FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE 207
>pdb|2BHW|A Chain A, Pea Light-Harvesting Complex Ii At 2.5 Angstrom Resolution
pdb|2BHW|B Chain B, Pea Light-Harvesting Complex Ii At 2.5 Angstrom Resolution
pdb|2BHW|C Chain C, Pea Light-Harvesting Complex Ii At 2.5 Angstrom Resolution
Length = 232
Score = 60.5 bits (145), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 77/181 (42%), Gaps = 48/181 (26%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR- 124
P YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G++
Sbjct: 33 PSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGSVFPELLSRNGVKF 92
Query: 125 ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKR--------YM 162
VW++AG+ F S ++ Q++LMG E R +
Sbjct: 93 GEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVV 152
Query: 163 DYISPGSQTKEGSFFGLEAAXXXXXXXXXXXXXXXXXXXAKDIRNAREWKLKEIKNGLIC 222
D + PG GSF L A D E K+KE+KNG +
Sbjct: 153 DPLYPG-----GSFDPL--------------------GLADDPEAFAELKVKELKNGRLA 187
Query: 223 L 223
+
Sbjct: 188 M 188
Score = 31.2 bits (69), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 23/47 (48%)
Query: 79 FDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRE 125
FDPLGL +DPE+ EL + R AM + G ++ G E
Sbjct: 161 FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLE 207
>pdb|1CE8|A Chain A, Carbamoyl Phosphate Synthetase From Escherichis Coli With
Complexed With The Allosteric Ligand Imp
pdb|1CE8|C Chain C, Carbamoyl Phosphate Synthetase From Escherichis Coli With
Complexed With The Allosteric Ligand Imp
pdb|1CE8|E Chain E, Carbamoyl Phosphate Synthetase From Escherichis Coli With
Complexed With The Allosteric Ligand Imp
pdb|1CE8|G Chain G, Carbamoyl Phosphate Synthetase From Escherichis Coli With
Complexed With The Allosteric Ligand Imp
pdb|1M6V|A Chain A, Crystal Structure Of The G359f (Small Subunit) Point
Mutant Of Carbamoyl Phosphate Synthetase
pdb|1M6V|C Chain C, Crystal Structure Of The G359f (Small Subunit) Point
Mutant Of Carbamoyl Phosphate Synthetase
pdb|1M6V|E Chain E, Crystal Structure Of The G359f (Small Subunit) Point
Mutant Of Carbamoyl Phosphate Synthetase
pdb|1M6V|G Chain G, Crystal Structure Of The G359f (Small Subunit) Point
Mutant Of Carbamoyl Phosphate Synthetase
Length = 1073
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 41/105 (39%), Gaps = 16/105 (15%)
Query: 69 LDGTLAGDFGFDPLGLGEDPESLR--------------WYVQAELVHARFAMAGVAGILF 114
L G G GFDP +DPE+L WY+ A+ A ++ GV +
Sbjct: 399 LRGLEVGATGFDPKVSLDDPEALTKIRRELKDAGADRIWYI-ADAFRAGLSVDGVFNLTN 457
Query: 115 TDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETK 159
D + I EL V E E F+ QL GFA+ +
Sbjct: 458 IDRWFLVQIEEL-VRLEEKVAEVGITGLNADFLRQLKRKGFADAR 501
>pdb|1JDB|B Chain B, Carbamoyl Phosphate Synthetase From Escherichia Coli
pdb|1JDB|E Chain E, Carbamoyl Phosphate Synthetase From Escherichia Coli
pdb|1JDB|H Chain H, Carbamoyl Phosphate Synthetase From Escherichia Coli
pdb|1JDB|K Chain K, Carbamoyl Phosphate Synthetase From Escherichia Coli
pdb|1BXR|A Chain A, Structure Of Carbamoyl Phosphate Synthetase Complexed With
The Atp Analog Amppnp
pdb|1BXR|C Chain C, Structure Of Carbamoyl Phosphate Synthetase Complexed With
The Atp Analog Amppnp
pdb|1BXR|E Chain E, Structure Of Carbamoyl Phosphate Synthetase Complexed With
The Atp Analog Amppnp
pdb|1BXR|G Chain G, Structure Of Carbamoyl Phosphate Synthetase Complexed With
The Atp Analog Amppnp
pdb|1C30|A Chain A, Crystal Structure Of Carbamoyl Phosphate Synthetase: Small
Subunit Mutation C269s
pdb|1C30|C Chain C, Crystal Structure Of Carbamoyl Phosphate Synthetase: Small
Subunit Mutation C269s
pdb|1C30|E Chain E, Crystal Structure Of Carbamoyl Phosphate Synthetase: Small
Subunit Mutation C269s
pdb|1C30|G Chain G, Crystal Structure Of Carbamoyl Phosphate Synthetase: Small
Subunit Mutation C269s
pdb|1C3O|A Chain A, Crystal Structure Of The Carbamoyl Phosphate Synthetase:
Small Subunit Mutant C269s With Bound Glutamine
pdb|1C3O|C Chain C, Crystal Structure Of The Carbamoyl Phosphate Synthetase:
Small Subunit Mutant C269s With Bound Glutamine
pdb|1C3O|E Chain E, Crystal Structure Of The Carbamoyl Phosphate Synthetase:
Small Subunit Mutant C269s With Bound Glutamine
pdb|1C3O|G Chain G, Crystal Structure Of The Carbamoyl Phosphate Synthetase:
Small Subunit Mutant C269s With Bound Glutamine
pdb|1CS0|A Chain A, Crystal Structure Of Carbamoyl Phosphate Synthetase
Complexed At Cys269 In The Small Subunit With The
Tetrahedral Mimic L-glutamate Gamma-semialdehyde
pdb|1CS0|C Chain C, Crystal Structure Of Carbamoyl Phosphate Synthetase
Complexed At Cys269 In The Small Subunit With The
Tetrahedral Mimic L-glutamate Gamma-semialdehyde
pdb|1CS0|E Chain E, Crystal Structure Of Carbamoyl Phosphate Synthetase
Complexed At Cys269 In The Small Subunit With The
Tetrahedral Mimic L-glutamate Gamma-semialdehyde
pdb|1CS0|G Chain G, Crystal Structure Of Carbamoyl Phosphate Synthetase
Complexed At Cys269 In The Small Subunit With The
Tetrahedral Mimic L-glutamate Gamma-semialdehyde
pdb|1KEE|A Chain A, Inactivation Of The Amidotransferase Activity Of Carbamoyl
Phosphate Synthetase By The Antibiotic Acivicin
pdb|1KEE|C Chain C, Inactivation Of The Amidotransferase Activity Of Carbamoyl
Phosphate Synthetase By The Antibiotic Acivicin
pdb|1KEE|E Chain E, Inactivation Of The Amidotransferase Activity Of Carbamoyl
Phosphate Synthetase By The Antibiotic Acivicin
pdb|1KEE|G Chain G, Inactivation Of The Amidotransferase Activity Of Carbamoyl
Phosphate Synthetase By The Antibiotic Acivicin
pdb|1T36|A Chain A, Crystal Structure Of E. Coli Carbamoyl Phosphate
Synthetase Small Subunit Mutant C248d Complexed With
Uridine 5'-Monophosphate
pdb|1T36|C Chain C, Crystal Structure Of E. Coli Carbamoyl Phosphate
Synthetase Small Subunit Mutant C248d Complexed With
Uridine 5'-Monophosphate
pdb|1T36|E Chain E, Crystal Structure Of E. Coli Carbamoyl Phosphate
Synthetase Small Subunit Mutant C248d Complexed With
Uridine 5'-Monophosphate
pdb|1T36|G Chain G, Crystal Structure Of E. Coli Carbamoyl Phosphate
Synthetase Small Subunit Mutant C248d Complexed With
Uridine 5'-Monophosphate
Length = 1073
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 41/105 (39%), Gaps = 16/105 (15%)
Query: 69 LDGTLAGDFGFDPLGLGEDPESLR--------------WYVQAELVHARFAMAGVAGILF 114
L G G GFDP +DPE+L WY+ A+ A ++ GV +
Sbjct: 399 LRGLEVGATGFDPKVSLDDPEALTKIRRELKDAGADRIWYI-ADAFRAGLSVDGVFNLTN 457
Query: 115 TDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETK 159
D + I EL V E E F+ QL GFA+ +
Sbjct: 458 IDRWFLVQIEEL-VRLEEKVAEVGITGLNADFLRQLKRKGFADAR 501
>pdb|1A9X|A Chain A, Carbamoyl Phosphate Synthetase: Caught In The Act Of
Glutamine Hydrolysis
pdb|1A9X|C Chain C, Carbamoyl Phosphate Synthetase: Caught In The Act Of
Glutamine Hydrolysis
pdb|1A9X|E Chain E, Carbamoyl Phosphate Synthetase: Caught In The Act Of
Glutamine Hydrolysis
pdb|1A9X|G Chain G, Carbamoyl Phosphate Synthetase: Caught In The Act Of
Glutamine Hydrolysis
Length = 1073
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 41/105 (39%), Gaps = 16/105 (15%)
Query: 69 LDGTLAGDFGFDPLGLGEDPESLR--------------WYVQAELVHARFAMAGVAGILF 114
L G G GFDP +DPE+L WY+ A+ A ++ GV +
Sbjct: 399 LRGLEVGATGFDPKVSLDDPEALTKIRRELKDAGADRIWYI-ADAFRAGLSVDGVFNLTN 457
Query: 115 TDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETK 159
D + I EL V E E F+ QL GFA+ +
Sbjct: 458 IDRWFLVQIEEL-VRLEEKVAEVGITGLNADFLRQLKRKGFADAR 501
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.139 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,104,467
Number of Sequences: 62578
Number of extensions: 226798
Number of successful extensions: 400
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 355
Number of HSP's gapped (non-prelim): 30
length of query: 226
length of database: 14,973,337
effective HSP length: 95
effective length of query: 131
effective length of database: 9,028,427
effective search space: 1182723937
effective search space used: 1182723937
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)