BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027238
(226 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P10708|CB12_SOLLC Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum
lycopersicum GN=CAB7 PE=3 SV=1
Length = 270
Score = 166 bits (420), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 92/185 (49%), Positives = 111/185 (60%), Gaps = 6/185 (3%)
Query: 43 TRRYLATVVRAQQ--RPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELV 100
T R TV A RP W PG PPP+LDG+L GDFGFDPLGL DPESLRW QAELV
Sbjct: 50 TARSATTVCVAADPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELV 109
Query: 101 HARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKR 160
H R+AM G AGI +LL GI P WY AG E+ F T TLFIV+L+L+G+AE +R
Sbjct: 110 HCRWAMLGAAGIFIPELLTKIGILNTPSWYTAGEQEY-FTDTTTLFIVELVLIGWAEGRR 168
Query: 161 YMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAK-DIRNAREWKLKEIKNG 219
+ D I PG + F L G + GYPGG +PLG +E + KEIKNG
Sbjct: 169 WADIIKPGCVNTDPIF--PNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNG 226
Query: 220 LICLV 224
+ ++
Sbjct: 227 RLAML 231
>sp|P13869|CB12_PETHY Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida
PE=2 SV=1
Length = 270
Score = 162 bits (410), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 85/188 (45%), Positives = 112/188 (59%), Gaps = 4/188 (2%)
Query: 38 AKSGTTRRYLATVVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQA 97
A G+ ++ V RP W PG PP +LDG+L GDFGFDPLGLG DPESL+W QA
Sbjct: 47 APVGSRSVAVSAVAADPDRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPESLKWNAQA 106
Query: 98 ELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAE 157
ELVH+R+AM G AGI + L G+ P WY AG E+ F T TLF+++L+L+G+AE
Sbjct: 107 ELVHSRWAMLGAAGIFIPEFLTKIGVLNTPSWYTAGEQEY-FTDTTTLFVIELVLIGWAE 165
Query: 158 TKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAK-DIRNAREWKLKEI 216
+R+ D I PG + F L G + GYPGG +PLG +E + KEI
Sbjct: 166 GRRWADIIKPGCVNTDPIF--PNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEI 223
Query: 217 KNGLICLV 224
KNG + ++
Sbjct: 224 KNGRLAML 231
>sp|Q9SQL2|CB24_PEA Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum
GN=lhcA-P4 PE=1 SV=1
Length = 252
Score = 148 bits (374), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 87/205 (42%), Positives = 121/205 (59%), Gaps = 18/205 (8%)
Query: 30 GITSAFLPAKSGTTRRYLA----------TVVRAQQRPTWLPGVDPPPYLDGTLAGDFGF 79
G+ S FL SG R +A + ++ WLPG+ P YL G+L GD GF
Sbjct: 17 GLKSRFLGGSSGKLNRGVAFRPVGCSPSASFKVEAKKGEWLPGLASPGYLTGSLPGDNGF 76
Query: 80 DPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKF 139
DPLGL EDPE+LRW+VQAELV+ R+AM GVAG+L ++ GI +P WY AG E+ F
Sbjct: 77 DPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGIINVPKWYAAGKEEY-F 135
Query: 140 ASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPL 199
AS+ TLF+++ +L + E +R+ D +PGS ++ F + +L E GYPGG + NPL
Sbjct: 136 ASSSTLFVIEFILSHYVEIRRWQDIKNPGSVNQDPIF--KQYSLPAGEVGYPGG-IFNPL 192
Query: 200 GLAKDIRNAREWKLKEIKNGLICLV 224
A + E K KEI NG + ++
Sbjct: 193 NFAPTL----EAKEKEIANGRLAML 213
>sp|P27521|CA4_ARATH Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis
thaliana GN=LHCA4 PE=1 SV=1
Length = 251
Score = 147 bits (371), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 77/170 (45%), Positives = 112/170 (65%), Gaps = 8/170 (4%)
Query: 55 QRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILF 114
++ WLPG+ P YL G+LAGD GFDPLGL EDPE+L+W+VQAELV+ R+AM GVAG+L
Sbjct: 53 KKGEWLPGLASPDYLTGSLAGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLL 112
Query: 115 TDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEG 174
++ GI +P WY+AG ++ FAS+ TLF+++ +L + E +R+ D +PGS ++
Sbjct: 113 PEVFTKIGIINVPEWYDAGKEQY-FASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDP 171
Query: 175 SFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
F + +L E GYPGG + NPL A +E K KE+ NG + ++
Sbjct: 172 IF--KQYSLPKGEVGYPGG-IFNPLNFAP----TQEAKEKELANGRLAML 214
>sp|Q32904|CB23_PEA Chlorophyll a-b binding protein 3, chloroplastic OS=Pisum sativum
GN=lhca3 PE=1 SV=1
Length = 275
Score = 135 bits (339), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 89/239 (37%), Positives = 122/239 (51%), Gaps = 33/239 (13%)
Query: 11 LQPSSSSSFICNDVNKSSIGITSAFLPAKSGTTRRYLATVVRAQ----------QRPTWL 60
L SSS +F V +S + LP+ G +R+ L VRA RP W
Sbjct: 6 LVSSSSLTFAAEAVRQS---FRARSLPSSVGCSRKGL---VRAAATPPVKQGGVDRPLWF 59
Query: 61 PGVDPPPYLDGTLAGDFGFDPLGLGEDPESL------RWYVQAELVHARFAMAGVAGILF 114
YLDG+L GD+GFDPLGL DPE RW E+++ RFAM G G +
Sbjct: 60 ASKQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPRWLAYGEVINGRFAMLGAVGAIA 118
Query: 115 TDLLRVTGI---RELPVWYEAGAVE-----FKFASTRTLFIVQLLLMGFAETKRYMDYIS 166
+ L G+ W++ G + +A TLF++++ LMGFAE +R+ D+
Sbjct: 119 PEYLGKVGLIPQETALAWFQTGVIPPAGTYNYWADNYTLFVLEMALMGFAEHRRFQDWAK 178
Query: 167 PGSQTKEGSFFGLEAALEGL-EPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
PGS K+ F GLE G P YPGGP NPLG KD ++ +E KLKE+KNG + ++
Sbjct: 179 PGSMGKQ-YFLGLEKGFGGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAML 236
Score = 31.2 bits (69), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 79 FDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
F+PLG G+D +SL+ E+ + R AM + G L VTG+
Sbjct: 208 FNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQGL--VTGV 250
>sp|P27522|CB13_SOLLC Chlorophyll a-b binding protein 8, chloroplastic OS=Solanum
lycopersicum GN=CAB8 PE=3 SV=1
Length = 273
Score = 135 bits (339), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 78/190 (41%), Positives = 106/190 (55%), Gaps = 17/190 (8%)
Query: 50 VVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESL------RWYVQAELVHAR 103
V + R W YLDG L GDFGFDPLGL DPE +W E+++ R
Sbjct: 47 VKQGANRQLWFASKQSLSYLDGRLPGDFGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGR 105
Query: 104 FAMAGVAGILFTDLLRVTGI---RELPVWYEAGAVE-----FKFASTRTLFIVQLLLMGF 155
FAM G AG + ++L G+ W++ G + +A TLF++++ LMGF
Sbjct: 106 FAMLGAAGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADNYTLFVLEMALMGF 165
Query: 156 AETKRYMDYISPGSQTKEGSFFGLEAALEGL-EPGYPGGPLLNPLGLAKDIRNAREWKLK 214
AE +R+ D+ PGS K+ F GLE L G +P YPGGPL NPLG KD ++ +E KLK
Sbjct: 166 AEHRRFQDWAKPGSMGKQ-YFLGLEKGLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLK 224
Query: 215 EIKNGLICLV 224
EIKNG + ++
Sbjct: 225 EIKNGRLAML 234
Score = 31.6 bits (70), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 7/64 (10%)
Query: 60 LPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLR 119
L G P Y G L F+PLG G+D +S++ E+ + R AM + G L
Sbjct: 192 LGGSGDPAYPGGPL-----FNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGYFIQAL-- 244
Query: 120 VTGI 123
VTG+
Sbjct: 245 VTGV 248
>sp|Q36718|CB120_HORVU Chlorophyll a-b binding protein 1B-20, chloroplastic (Fragment)
OS=Hordeum vulgare GN=LHC Ib-20 PE=1 SV=1
Length = 231
Score = 125 bits (315), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 77/188 (40%), Positives = 105/188 (55%), Gaps = 10/188 (5%)
Query: 37 PAKSGTTRRYLATVVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQ 96
PA SG+ R V Q + +WLPG+ P YLDG+L GD GFDPL L EDPE LRW+VQ
Sbjct: 15 PAASGSPRSTRRDVA-VQAKGSWLPGLQSPAYLDGSLEGDNGFDPLALAEDPEDLRWFVQ 73
Query: 97 AELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFA 156
A++V+ R+AM GVAG+L ++L G+ P W E FAS+ T V + +
Sbjct: 74 ADVVNGRWAMLGVAGMLIPEVLTKAGLMNAPEWLRLPGKETYFASSSTALRVHMSST-YV 132
Query: 157 ETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEI 216
E +R+ D +PGS ++ F +L E GYPG + NPL A E K KE+
Sbjct: 133 EIRRWQDIKNPGSVNQDPIFKSY--SLPPHECGYPGR-VFNPLNFA-----PLENKEKEL 184
Query: 217 KNGLICLV 224
NG + ++
Sbjct: 185 ANGRLAML 192
>sp|P27525|CB4B_SOLLC Chlorophyll a-b binding protein CP24 10B, chloroplastic OS=Solanum
lycopersicum GN=CAP10B PE=3 SV=1
Length = 256
Score = 120 bits (302), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 87/237 (36%), Positives = 119/237 (50%), Gaps = 43/237 (18%)
Query: 16 SSSFICNDVNKSSIGITSAFLPAKSGTTRRYLATVVRAQQRPTWLPGVDP------PPYL 69
SSSF+ K + + A + A+ T +R++ + +W+P V P +L
Sbjct: 14 SSSFLTG--GKKTQALLGAHVTARVTTPKRFVVAAAAVAPKKSWIPAVKSGGNLVDPEWL 71
Query: 70 DGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVW 129
DG+L GDFGFDPLGLG+DP L+WY +AEL+H R+AMA V GI +GI W
Sbjct: 72 DGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAW--SGIP----W 125
Query: 130 YEAGA-----VEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQ--------TKEGSF 176
+EAGA F F S L QLLLMG+ E+KR++D+ SQ +K
Sbjct: 126 FEAGADPGAIAPFSFGS---LLGTQLLLMGWVESKRWVDFFDNDSQSIDWATPWSKTAEN 182
Query: 177 FGLEAALEGLEPGYPGGPLLNPLGLAKDIRNA---------REWKLKEIKNGLICLV 224
F A G E GYPGG +PL LA + N KL EIK+ + ++
Sbjct: 183 F---ANFTG-EQGYPGGKFFDPLALAGTLNNGVYVPDTEKLERLKLAEIKHSRLAML 235
>sp|P27524|CB4A_SOLLC Chlorophyll a-b binding protein CP24 10A, chloroplastic OS=Solanum
lycopersicum GN=CAP10A PE=3 SV=1
Length = 256
Score = 119 bits (299), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 85/230 (36%), Positives = 118/230 (51%), Gaps = 28/230 (12%)
Query: 16 SSSFICNDVNKSSIGITSAFLPAKSGTTRRYLATVVRAQQRPTWLPGVD------PPPYL 69
SSSF+ NKS + + G TV+ A + +W+P V P +L
Sbjct: 13 SSSFLTGG-NKSQALLAAPLAARVGGAATPKRFTVLAAAAKKSWIPAVRGGGNLVDPEWL 71
Query: 70 DGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVW 129
DG+L GD+GFDPLGLG+DP L+WY +AEL+H R+AMA V GI +GI W
Sbjct: 72 DGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAW--SGIP----W 125
Query: 130 YEAGAVEFKFA--STRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGL- 186
+EAGA A S TL QL+LMG+ E+KR++D+ P SQ+ E + + A
Sbjct: 126 FEAGADPGAIAPFSFGTLLGTQLILMGWVESKRWVDFFDPDSQSVEWATPWSKTAENFAN 185
Query: 187 ---EPGYPGGPLLNPLGLAKDIRNA---------REWKLKEIKNGLICLV 224
E GYPGG +PL LA + N K+ EIK+ + ++
Sbjct: 186 FTGEQGYPGGKFFDPLALAGTLNNGVYVPDTEKLERLKVAEIKHARLAML 235
>sp|P36494|CB4_SPIOL Chlorophyll a-b binding protein CP24, chloroplastic OS=Spinacia
oleracea PE=2 SV=1
Length = 261
Score = 107 bits (268), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 82/206 (39%), Positives = 108/206 (52%), Gaps = 27/206 (13%)
Query: 40 SGTTRRYLATVVRAQQRPTWLPGVD------PPPYLDGTLAGDFGFDPLGLGEDPESLRW 93
S T+R+ + A + +W+P V P +LDG+L GDFGFDPLGLG+DP L+W
Sbjct: 41 STTSRKLVVVAAAAAPKKSWIPAVKGGGNFLDPEWLDGSLPGDFGFDPLGLGKDPAFLKW 100
Query: 94 YVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFA--STRTLFIVQLL 151
Y +AEL+H R+AM V GI TGI W+EAGA A S TL QLL
Sbjct: 101 YREAELIHGRWAMLAVLGIFVGQAW--TGIP----WFEAGADPGAVAPFSFGTLLGTQLL 154
Query: 152 LMGFAETKRYMDYISPGSQTKE----GSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRN 207
LMG+ E+KR++D+ P SQ+ E S + E GYPGG +PL LA I N
Sbjct: 155 LMGWVESKRWVDFFDPDSQSVEWATPWSRTAENFSNSTGEQGYPGGKFFDPLSLAGTISN 214
Query: 208 A---------REWKLKEIKNGLICLV 224
KL EIK+ + ++
Sbjct: 215 GVYNPDTDKLERLKLAEIKHARLAML 240
>sp|P27517|CB2_DUNTE Chlorophyll a-b binding protein of LHCII type I, chloroplastic
OS=Dunaliella tertiolecta PE=2 SV=1
Length = 253
Score = 96.3 bits (238), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 67/179 (37%), Positives = 90/179 (50%), Gaps = 31/179 (17%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLL-RVTG 122
D P YL G GD+G+D GL DP++ Y + EL+HAR+A+ G GIL +LL + G
Sbjct: 49 DTPEYLTGEFPGDYGWDTAGLSADPQTFARYREIELIHARWALLGALGILTPELLSQYAG 108
Query: 123 IR-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISP 167
++ PVW++AGA F S VQ++LMG AE R
Sbjct: 109 VQFGEPVWFKAGAQIFADGGLNYLGNESLIHAQSIIATLAVQVVLMGLAEAYR------- 161
Query: 168 GSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICLVLC 226
+ G E L+ L+ YPGGP +PLGLA D E K+KEIKNG + + C
Sbjct: 162 -------ANGGSEGFLDDLDTLYPGGP-FDPLGLADDPDTFAELKVKEIKNGRLAMFSC 212
>sp|Q01667|CAB6_ARATH Chlorophyll a-b binding protein 6, chloroplastic OS=Arabidopsis
thaliana GN=LHCA1 PE=1 SV=1
Length = 241
Score = 95.1 bits (235), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 63/183 (34%), Positives = 90/183 (49%), Gaps = 27/183 (14%)
Query: 49 TVVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAG 108
V R + W+PG P YLDG+ GDFGFDPLGLGE P +L Y ++EL+H R+AM
Sbjct: 38 NVGRIRMAAHWMPGEPRPAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLA 97
Query: 109 VAGILFTDLLRVTGIRELPVW--YEAGAVEF-----KFASTRTLFIVQLLLMGFAETKRY 161
V GIL + L + W G + + + T+ ++ L + F E +R
Sbjct: 98 VPGILVPEALGYGNWVKAQEWAALPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRS 157
Query: 162 MDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLI 221
M+ + K+ YPGG +PLG +KD + E K+KEIKNG +
Sbjct: 158 MEK---DPEKKK----------------YPGG-AFDPLGYSKDPKKLEELKVKEIKNGRL 197
Query: 222 CLV 224
L+
Sbjct: 198 ALL 200
>sp|P12360|CB11_SOLLC Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum
lycopersicum GN=CAB6A PE=2 SV=1
Length = 246
Score = 93.6 bits (231), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 67/212 (31%), Positives = 99/212 (46%), Gaps = 31/212 (14%)
Query: 20 ICNDVNKSSIGITSAFLPAKSGTTRRYLATVVRAQQRPTWLPGVDPPPYLDGTLAGDFGF 79
+C S+ +A +P G T + R W+PG P YLDG+ GDFGF
Sbjct: 14 VCPSFLSSTKSKFAAAMPVYVGATN----FMSRFSMSADWMPGQPRPSYLDGSAPGDFGF 69
Query: 80 DPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVW--YEAGAVEF 137
D LGLGE P +L Y ++EL+H R+AM V GI+ + L + + W G +
Sbjct: 70 DSLGLGEVPANLERYKESELIHCRWAMLAVPGIIVPEALGLGNWVKAQEWAAIPGGQATY 129
Query: 138 -----KFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPG 192
+ + T+ ++ L + F E +R M+ S+ K+ YPG
Sbjct: 130 LGQPVPWGTLPTILAIEFLAIAFVEHQRSMEK---DSEKKK----------------YPG 170
Query: 193 GPLLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
G +PLG +KD E K+KEIKNG + L+
Sbjct: 171 G-AFDPLGYSKDPAKFEELKVKEIKNGRLALL 201
>sp|P22686|CB2_CHLMO Chlorophyll a-b binding protein of LHCII type I, chloroplastic
OS=Chlamydomonas moewusii PE=2 SV=1
Length = 256
Score = 91.7 bits (226), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 73/208 (35%), Positives = 97/208 (46%), Gaps = 41/208 (19%)
Query: 37 PAKSGTTRRYLATVVRAQQRPTWLP--GVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWY 94
PAKS Y R WL + P YL G GD+G+D GL DPE+ + Y
Sbjct: 31 PAKSAGIEWY------GPDRAKWLGPFSTNTPAYLTGEFPGDYGWDTAGLSADPETFKKY 84
Query: 95 VQAELVHARFAMAGVAGILFTDLLRV-TGIR-ELPVWYEAGAVEFKFASTRTL------- 145
+ E++HAR+A+ G GIL +LL G++ PVW++AGA F L
Sbjct: 85 RELEVIHARWALLGALGILTPELLSTYAGVKFGEPVWFKAGAQIFSEGGLDYLGSPALIH 144
Query: 146 -------FIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNP 198
VQ++LMG E R ++ G A EGL+P YP G +P
Sbjct: 145 AQNIVATLAVQVVLMGLIEGYR----VNGGP------------AGEGLDPLYP-GESFDP 187
Query: 199 LGLAKDIRNAREWKLKEIKNGLICLVLC 226
LGLA D E K+KEIKNG + + C
Sbjct: 188 LGLADDPDTFAELKVKEIKNGRLAMFSC 215
>sp|Q9SDM1|CB121_HORVU Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum
vulgare GN=LHC Ib-21 PE=1 SV=1
Length = 245
Score = 89.4 bits (220), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 65/210 (30%), Positives = 99/210 (47%), Gaps = 32/210 (15%)
Query: 27 SSIGITSAFLPA-KSGTTR----RYLATVVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDP 81
S++G+ S P+ +SG + Y T R W PG P +LDG+ GDFGFDP
Sbjct: 11 SAVGVPSLLAPSSRSGRSGLPFCAYATTSGRVTMSAEWFPGQPRPAHLDGSSPGDFGFDP 70
Query: 82 LGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVW--YEAGAVEF-- 137
LGL PE+ + ++E+ H R+AM V G+L + L + + W G +
Sbjct: 71 LGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEALGLGNWVKAQEWAALPDGQATYLG 130
Query: 138 ---KFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGP 194
+ + T+ ++ L + FAE +R M+ + K+ YPGG
Sbjct: 131 NPVPWGNLPTILAIEFLAIAFAEQQRTMEK---DPEKKK----------------YPGG- 170
Query: 195 LLNPLGLAKDIRNAREWKLKEIKNGLICLV 224
+PLG +KD E KLKEIKNG + ++
Sbjct: 171 AFDPLGFSKDPAKFEELKLKEIKNGRLAML 200
>sp|P12328|CB21_LEMGI Chlorophyll a-b binding protein of LHCII type I, chloroplastic
OS=Lemna gibba PE=3 SV=1
Length = 264
Score = 85.9 bits (211), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 61/164 (37%), Positives = 83/164 (50%), Gaps = 14/164 (8%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR- 124
P YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G++
Sbjct: 65 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCIFPELLSKNGVQF 124
Query: 125 ELPVWYEAGAVEFK-----FASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGL 179
VW++AGA F + L Q +L +A M I EG G
Sbjct: 125 GEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWATQVVLMGLI-------EGYRVGG 177
Query: 180 EAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
EGL+P YPGG +PLGLA D E K+KEIKNG + +
Sbjct: 178 GPLGEGLDPLYPGGA-FDPLGLADDPEAFAELKVKEIKNGRLAM 220
>sp|P27518|CB21_GOSHI Chlorophyll a-b binding protein 151, chloroplastic OS=Gossypium
hirsutum GN=CAB-151 PE=2 SV=2
Length = 265
Score = 85.9 bits (211), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 65/199 (32%), Positives = 93/199 (46%), Gaps = 34/199 (17%)
Query: 42 TTRRYLATVVRAQQRPTWL-PGVDP-PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAEL 99
T + ++ RP +L P D P YL G GD+G+D GL DPE+ + E+
Sbjct: 40 TVKSAPTSIWYGPDRPKYLGPFSDQIPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEV 99
Query: 100 VHARFAMAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEF--------------KFASTRT 144
+H R+AM G G +F ++L G++ VW++AG+ F S
Sbjct: 100 IHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILA 159
Query: 145 LFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKD 204
++ Q++LMGF E R G EGL+P YPGG +PLGLA D
Sbjct: 160 IWACQVVLMGFVEGYR----------------VGGGPLGEGLDPIYPGG-AFDPLGLADD 202
Query: 205 IRNAREWKLKEIKNGLICL 223
E K+KEIKNG + +
Sbjct: 203 PDAFAELKVKEIKNGRLAM 221
>sp|Q9XF88|CB4B_ARATH Chlorophyll a-b binding protein CP29.2, chloroplastic
OS=Arabidopsis thaliana GN=LHCB4.2 PE=1 SV=1
Length = 287
Score = 85.1 bits (209), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 69/258 (26%), Positives = 107/258 (41%), Gaps = 80/258 (31%)
Query: 20 ICNDVNKSSIGITSAFLPAKSGTTRRYLATVVRAQQRPTWLPGVDPPPYLDGTLAGDFGF 79
+ +D++ +S T+ F + + TV+ RP W PG P YLDG+L GD+GF
Sbjct: 18 VVSDISSNSSRFTARFGFGTKKASPKKAKTVI--SDRPLWFPGAKSPEYLDGSLVGDYGF 75
Query: 80 DPLGLGE--------------------------------DPES-----------LRWYVQ 96
DP GLG+ DP+S L+ + +
Sbjct: 76 DPFGLGKPAEYLQFDLDSLDQNLAKNLYGEVIGTRTEAVDPKSTPFQPYSEVFGLQRFRE 135
Query: 97 AELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFAST----------RTLF 146
EL+H R+AM G + + L TG+ W +AG VE S+ TL
Sbjct: 136 CELIHGRWAMLATLGAITVEWL--TGV----TWQDAGKVELVDGSSYLGQPLPFSISTLI 189
Query: 147 IVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIR 206
+++L++G+ E +R A L+ + YPGG +PLGLA D
Sbjct: 190 WIEVLVIGYIEFQR-------------------NAELDSEKRLYPGGKFFDPLGLASDPV 230
Query: 207 NAREWKLKEIKNGLICLV 224
+ +L EIK+ + +V
Sbjct: 231 KKAQLQLAEIKHARLAMV 248
Score = 34.3 bits (77), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 18/34 (52%)
Query: 79 FDPLGLGEDPESLRWYVQAELVHARFAMAGVAGI 112
FDPLGL DP AE+ HAR AM G G
Sbjct: 220 FDPLGLASDPVKKAQLQLAEIKHARLAMVGFLGF 253
>sp|P27520|CB215_PEA Chlorophyll a-b binding protein 215, chloroplastic OS=Pisum sativum
GN=CAB215 PE=1 SV=1
Length = 265
Score = 84.7 bits (208), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 58/164 (35%), Positives = 84/164 (51%), Gaps = 14/164 (8%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR- 124
P YL G GD+G+D GL DPE+ + E++H+R+AM G G F +LL G++
Sbjct: 66 PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCTFPELLEKNGVKF 125
Query: 125 ELPVWYEAGAVEF-----KFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGL 179
VW++AG+ F + L Q +L +A M ++ EG G
Sbjct: 126 GEAVWFKAGSQIFAEGGLDYLGNPNLIHAQSILAIWATQVVLMGFV-------EGYRVGG 178
Query: 180 EAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
EGL+P YPGG +PLGLA D + E K+KE+KNG + +
Sbjct: 179 GPLGEGLDPLYPGG-AFDPLGLADDPDSFAELKVKELKNGRLAM 221
Score = 31.2 bits (69), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 22/44 (50%)
Query: 79 FDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTG 122
FDPLGL +DP+S EL + R AM + G ++ G
Sbjct: 194 FDPLGLADDPDSFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 237
>sp|Q10HD0|CB23_ORYSJ Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa
subsp. japonica GN=RCABP89 PE=2 SV=1
Length = 263
Score = 84.3 bits (207), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 59/173 (34%), Positives = 84/173 (48%), Gaps = 32/173 (18%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR- 124
P YL G GD+G+D GL DPE+ + E++H+R+AM G G +F ++L G++
Sbjct: 64 PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNGVKF 123
Query: 125 ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPGSQ 170
VW++AGA F S ++ VQ++LMGF E R
Sbjct: 124 GEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYR---------- 173
Query: 171 TKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G EGL+ YPGG +PLGLA D E K+KE+KNG + +
Sbjct: 174 ------VGGGPLGEGLDKVYPGG-AFDPLGLADDPDTFAELKVKELKNGRLAM 219
>sp|A2XJ35|CB23_ORYSI Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa
subsp. indica GN=OsI_012078 PE=2 SV=1
Length = 263
Score = 84.3 bits (207), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 59/173 (34%), Positives = 84/173 (48%), Gaps = 32/173 (18%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR- 124
P YL G GD+G+D GL DPE+ + E++H+R+AM G G +F ++L G++
Sbjct: 64 PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNGVKF 123
Query: 125 ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPGSQ 170
VW++AGA F S ++ VQ++LMGF E R
Sbjct: 124 GEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYR---------- 173
Query: 171 TKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G EGL+ YPGG +PLGLA D E K+KE+KNG + +
Sbjct: 174 ------VGGGPLGEGLDKVYPGG-AFDPLGLADDPDTFAELKVKELKNGRLAM 219
>sp|P12330|CB21_ORYSJ Chlorophyll a-b binding protein 1, chloroplastic OS=Oryza sativa
subsp. japonica GN=CAB1R PE=2 SV=2
Length = 265
Score = 84.0 bits (206), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 60/175 (34%), Positives = 86/175 (49%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G+
Sbjct: 64 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGV 123
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ VQ++LMG E R
Sbjct: 124 KFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRI------- 176
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E ++P YPGG +PLGLA D E K+KEIKNG + +
Sbjct: 177 ----AGGPLG-----EVVDPLYPGG-AFDPLGLADDPEAFAELKVKEIKNGRLAM 221
>sp|P12331|CB22_ORYSJ Chlorophyll a-b binding protein 2, chloroplastic OS=Oryza sativa
subsp. japonica GN=CAB2R PE=2 SV=2
Length = 261
Score = 83.6 bits (205), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 60/175 (34%), Positives = 86/175 (49%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G+
Sbjct: 60 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGV 119
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ VQ++LMG E R
Sbjct: 120 KFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIA------ 173
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E ++P YPGG +PLGLA D E K+KEIKNG + +
Sbjct: 174 -----GGPLG-----EVVDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAM 217
>sp|P14278|CB24_SOLLC Chlorophyll a-b binding protein 4, chloroplastic OS=Solanum
lycopersicum GN=CAB4 PE=2 SV=1
Length = 265
Score = 83.2 bits (204), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 62/199 (31%), Positives = 91/199 (45%), Gaps = 34/199 (17%)
Query: 42 TTRRYLATVVRAQQRPTWLP--GVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAEL 99
T + ++ + RP +L P YL G GD+G+D GL DPE+ + E+
Sbjct: 40 TVKSAPQSIWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEV 99
Query: 100 VHARFAMAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEF--------------KFASTRT 144
+H R+AM G G +F ++L G++ VW++AG+ F S
Sbjct: 100 IHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLVHAQSILA 159
Query: 145 LFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKD 204
++ Q++LMGF E R G EGL+ YPGG +PLGLA D
Sbjct: 160 IWACQVVLMGFVEGYR----------------VGGGPLGEGLDKIYPGGA-FDPLGLADD 202
Query: 205 IRNAREWKLKEIKNGLICL 223
E K+KEIKNG + +
Sbjct: 203 PEAFAELKVKEIKNGRLAM 221
>sp|P14273|CB2_CHLRE Chlorophyll a-b binding protein of LHCII type I, chloroplastic
OS=Chlamydomonas reinhardtii GN=cabII-1 PE=3 SV=1
Length = 253
Score = 83.2 bits (204), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 63/172 (36%), Positives = 83/172 (48%), Gaps = 32/172 (18%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR- 124
P YL G GD+G+D GL DPE+ + Y + EL+HAR+AM G G +LL +G +
Sbjct: 54 PAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCQTPELLAKSGTKF 113
Query: 125 ELPVWYEAGAVEFKFASTRTL--------------FIVQLLLMGFAETKRYMDYISPGSQ 170
VW++AGA F L VQ++LMG E R ++ G
Sbjct: 114 GEAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATSAVQVILMGLIEGYR----VNGGP- 168
Query: 171 TKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLIC 222
A EGL+P YP G +PLGLA D E K+KEIKNG +
Sbjct: 169 -----------AGEGLDPLYP-GESFDPLGLADDPDTFAELKVKEIKNGRLA 208
>sp|P20866|CB2_PHYPA Chlorophyll a-b binding protein, chloroplastic OS=Physcomitrella
patens subsp. patens PE=3 SV=1
Length = 269
Score = 83.2 bits (204), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 68/221 (30%), Positives = 104/221 (47%), Gaps = 35/221 (15%)
Query: 21 CNDVNKSSIGITSAFLPAKSGTTRRYLA-TVVRAQQRPTWLP--GVDPPPYLDGTLAGDF 77
N++++ +G A + + ++ + T+ RP +L + P YL+G AGD+
Sbjct: 21 VNELSRKVLGNVEARVTMRRTVSKSAGSDTIWYGADRPKFLGPFSGETPSYLNGEFAGDY 80
Query: 78 GFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR-ELPVWYEAGAVE 136
G+D GL DPE+ + E++HAR+AM G G L +LL +G++ VW++AGA
Sbjct: 81 GWDTAGLSSDPETFARNRELEVIHARWAMLGALGCLTPELLAKSGVKFGEAVWFKAGAQI 140
Query: 137 F--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAA 182
F S ++ Q++LMG E R G G
Sbjct: 141 FSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVA-----------GGPLG---- 185
Query: 183 LEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
E +P YPGG +PLGLA D E K+KEIKNG + +
Sbjct: 186 -EVTDPIYPGGS-FDPLGLADDPDTFAELKVKEIKNGRLAM 224
>sp|P27494|CB23_TOBAC Chlorophyll a-b binding protein 36, chloroplastic OS=Nicotiana
tabacum GN=CAB36 PE=3 SV=1
Length = 265
Score = 82.8 bits (203), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 62/190 (32%), Positives = 90/190 (47%), Gaps = 16/190 (8%)
Query: 42 TTRRYLATVVRAQQRPTWLP--GVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAEL 99
T + ++ + RP +L P YL G GD+G+D GL DPE+ + E+
Sbjct: 40 TVKSAPQSIWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEV 99
Query: 100 VHARFAMAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK-----FASTRTLFIVQLLLM 153
+H R+AM G G +F ++L G++ VW++AG+ F + L Q +L
Sbjct: 100 IHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILA 159
Query: 154 GFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKL 213
+A M I EG G EGL+ YPGG +PLGLA D E K+
Sbjct: 160 VWASQVVLMGLI-------EGYRVGGGPLGEGLDKIYPGGA-FDPLGLADDPEAFAELKV 211
Query: 214 KEIKNGLICL 223
KEIKNG + +
Sbjct: 212 KEIKNGRLAM 221
>sp|P15194|CB2B_PINSY Chlorophyll a-b binding protein type 2 member 1B, chloroplastic
OS=Pinus sylvestris PE=2 SV=1
Length = 274
Score = 82.8 bits (203), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 60/175 (34%), Positives = 84/175 (48%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 73 EPPSYLTGEFPGDYGWDTAGLSADPENFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 132
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AGA F S ++ Q++LMG E R
Sbjct: 133 KFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIA------ 186
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E +P YPGG +PLGLA+D E K+KEIKNG + +
Sbjct: 187 -----GGPLG-----EVTDPIYPGGS-FDPLGLAEDPEAFAELKVKEIKNGRLAM 230
Score = 31.6 bits (70), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 22/44 (50%)
Query: 79 FDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTG 122
FDPLGL EDPE+ E+ + R AM + G ++ G
Sbjct: 203 FDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 246
>sp|P10049|CB21_PINTH Chlorophyll a-b binding protein type I, chloroplastic OS=Pinus
thunbergii PE=2 SV=1
Length = 266
Score = 82.4 bits (202), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 64/190 (33%), Positives = 89/190 (46%), Gaps = 16/190 (8%)
Query: 42 TTRRYLATVVRAQQRPTWLPGVDP--PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAEL 99
T R ++ RP +L P YL G GD+G+D + DPE+ + E+
Sbjct: 41 TVRSAPESIWYGPDRPKYLGPFSEGTPSYLTGEFPGDYGWDTAAVSADPETFAKNRELEV 100
Query: 100 VHARFAMAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK-----FASTRTLFIVQLLLM 153
+H R+AM G G +F +LL G++ VW++AGA F +A L Q +L
Sbjct: 101 IHCRWAMLGALGCVFPELLAKNGLKFGEAVWFKAGAQIFSEGGLDYAGNPNLIHAQSILA 160
Query: 154 GFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKL 213
+A M I EG G EGL+P PGG +PLGLA D E K+
Sbjct: 161 IWACQVVLMGLI-------EGYRVGGGTLGEGLDPLLPGG-AFDPLGLADDPEACAELKV 212
Query: 214 KEIKNGLICL 223
KEIKNG + +
Sbjct: 213 KEIKNGRLAM 222
>sp|P14279|CB25_SOLLC Chlorophyll a-b binding protein 5, chloroplastic (Fragment)
OS=Solanum lycopersicum GN=CAB5 PE=2 SV=1
Length = 237
Score = 82.0 bits (201), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 61/190 (32%), Positives = 90/190 (47%), Gaps = 16/190 (8%)
Query: 42 TTRRYLATVVRAQQRPTWLP--GVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAEL 99
T + ++ + RP +L P YL G GD+G+D GL DPE+ + E+
Sbjct: 12 TVKSAPQSIWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEV 71
Query: 100 VHARFAMAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK-----FASTRTLFIVQLLLM 153
+H R+AM G G +F ++L G+ VW++AG+ F + L Q +L
Sbjct: 72 IHCRWAMLGALGCVFPEILSKNGVTFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILA 131
Query: 154 GFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKL 213
+A M ++ EG G EGL+ YPGG +PLGLA D E K+
Sbjct: 132 IWASQVVLMGFV-------EGYRVGGGPLGEGLDKIYPGG-AFDPLGLADDPEAFAELKV 183
Query: 214 KEIKNGLICL 223
KEIKNG + +
Sbjct: 184 KEIKNGRLAM 193
>sp|P12062|CB26_PETSP Chlorophyll a-b binding protein 37, chloroplastic OS=Petunia sp.
GN=CAB37 PE=3 SV=1
Length = 265
Score = 82.0 bits (201), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 61/190 (32%), Positives = 90/190 (47%), Gaps = 16/190 (8%)
Query: 42 TTRRYLATVVRAQQRPTWLP--GVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAEL 99
T + ++ + RP +L P YL G GD+G+D GL DPE+ + E+
Sbjct: 40 TVKSAPQSIWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEV 99
Query: 100 VHARFAMAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK-----FASTRTLFIVQLLLM 153
+H R+AM G G +F ++L G+ VW++AG+ F + L Q +L
Sbjct: 100 IHCRWAMLGALGCVFPEILSKNGVTFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILA 159
Query: 154 GFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKL 213
+A M ++ EG G EGL+ YPGG +PLGLA D E K+
Sbjct: 160 IWAAQVVLMGFV-------EGYRVGGGPLGEGLDKIYPGGA-FDPLGLADDPEAFAELKV 211
Query: 214 KEIKNGLICL 223
KEIKNG + +
Sbjct: 212 KEIKNGRLAM 221
>sp|Q9XF89|CB5_ARATH Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis
thaliana GN=LHCB5 PE=2 SV=1
Length = 280
Score = 82.0 bits (201), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 54/160 (33%), Positives = 83/160 (51%), Gaps = 10/160 (6%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRE 125
P YL+G +AGD+G+DP GLG+ PE+ Y EL+HAR+AM G AG + + L G
Sbjct: 82 PEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHARWAMLGAAGFIIPEALNKYGANC 141
Query: 126 LP--VWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAAL 183
P VW++ GA+ +T F + + + ++ ++ + L
Sbjct: 142 GPEAVWFKTGALLLD-GNTLNYFGKNIPI------NLVLAVVAEVVLLGGAEYYRITNGL 194
Query: 184 EGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
+ + +PGGP +PLGLAKD K+KEIKNG + +
Sbjct: 195 DFEDKLHPGGP-FDPLGLAKDPEQGALLKVKEIKNGRLAM 233
>sp|P15193|CB2A_PINSY Chlorophyll a-b binding protein type 2 member 1A, chloroplastic
OS=Pinus sylvestris PE=2 SV=1
Length = 278
Score = 81.6 bits (200), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 60/175 (34%), Positives = 84/175 (48%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G+
Sbjct: 77 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGV 136
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AGA F S ++ Q++LMG E R
Sbjct: 137 KFGEAVWFKAGAQIFSEGGLDYLGSPQLIHAQSILAIWACQVILMGAIEGYRVA------ 190
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E +P YPGG +PLGLA D E K+KEIKNG + +
Sbjct: 191 -----GGPLG-----EVTDPIYPGGN-FDPLGLADDPDAFAELKVKEIKNGRLAM 234
>sp|P92919|CB23_APIGR Chlorophyll a-b binding protein, chloroplastic OS=Apium graveolens
GN=LHC0 PE=1 SV=1
Length = 264
Score = 81.3 bits (199), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 57/175 (32%), Positives = 87/175 (49%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+ P YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G+
Sbjct: 63 EAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGV 122
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S +++ Q++LMG E R
Sbjct: 123 KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILSIWATQVILMGAVEGYRVA------ 176
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E ++P YPGG +PLGLA+D + E K+KE+KNG + +
Sbjct: 177 -----GGPLG-----EIVDPLYPGGS-FDPLGLAEDPERSAELKVKELKNGRLAM 220
Score = 30.8 bits (68), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 22/47 (46%)
Query: 79 FDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRE 125
FDPLGL EDPE EL + R AM + G ++ G E
Sbjct: 193 FDPLGLAEDPERSAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLE 239
>sp|P27523|CB23_HORVU Chlorophyll a-b binding protein of LHCII type III, chloroplastic
OS=Hordeum vulgare GN=LHBC PE=2 SV=1
Length = 268
Score = 81.3 bits (199), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 59/174 (33%), Positives = 85/174 (48%), Gaps = 32/174 (18%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLL-RVTGIR 124
P YL+G GD+G+D GL DPE+ E++H R+AM G G +F ++L + G+
Sbjct: 67 PSYLNGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCVFPEVLQKWVGVE 126
Query: 125 -ELPVWYEAGAVEF-----------KFASTRTLFIV---QLLLMGFAETKRYMDYISPGS 169
+ PVW++AG+ F +++ V Q+LLMG E R
Sbjct: 127 FKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFRIN------- 179
Query: 170 QTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
GL+ EG + YPGG +PLGLA D E K+KEIKNG + +
Sbjct: 180 --------GLDGVGEGNDL-YPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAM 224
>sp|P12329|CB21_MAIZE Chlorophyll a-b binding protein 1, chloroplastic OS=Zea mays
GN=CAB1 PE=3 SV=1
Length = 262
Score = 80.9 bits (198), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 85/175 (48%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G+
Sbjct: 61 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGV 120
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 121 KFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRI------- 173
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E ++P YPGG +PLGLA D E K+KE+KNG + +
Sbjct: 174 ----AGGPLG-----EVVDPLYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAM 218
Score = 31.2 bits (69), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 23/47 (48%)
Query: 79 FDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRE 125
FDPLGL +DPE+ EL + R AM + G ++ G E
Sbjct: 191 FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLE 237
>sp|P12470|CB25_NICPL Chlorophyll a-b binding protein E, chloroplastic OS=Nicotiana
plumbaginifolia GN=CABE PE=3 SV=1
Length = 266
Score = 80.9 bits (198), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 57/166 (34%), Positives = 84/166 (50%), Gaps = 14/166 (8%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+ P YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 65 ESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 124
Query: 124 R-ELPVWYEAGAVEFK-----FASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFF 177
+ VW++AG+ F + +L Q +L +A M + EG
Sbjct: 125 KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAV-------EGYRV 177
Query: 178 GLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
E E ++P YPGG +PLGLA+D E K+KEIKNG + +
Sbjct: 178 AGEPLGEVVDPLYPGGS-FDPLGLAEDPEAFAELKVKEIKNGRLAM 222
Score = 32.7 bits (73), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 23/47 (48%)
Query: 79 FDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRE 125
FDPLGL EDPE+ E+ + R AM + G L+ G E
Sbjct: 195 FDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQALVTGKGPLE 241
>sp|P20865|CB2_DUNSA Chlorophyll a-b binding protein of LHCII type I, chloroplastic
OS=Dunaliella salina PE=2 SV=1
Length = 273
Score = 80.5 bits (197), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 59/173 (34%), Positives = 84/173 (48%), Gaps = 34/173 (19%)
Query: 71 GTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLL-RVTGIR--ELP 127
G GD+G+D GL DPE+ + Y + EL+HAR + G G++ +LL GI+ +
Sbjct: 78 GEFPGDYGWDTAGLSADPETFKRYRELELIHARCGLLGALGMVTPELLADEDGIKFGDAA 137
Query: 128 VWYEAGAVEFKFASTRTL--------------FIVQLLLMGFAETKRYMDYISPGSQTKE 173
+W++AGA F+ L VQ++LMG E R ++ G
Sbjct: 138 IWFKAGAAIFQDGGLNYLGNPSLIHAQNIVATLAVQVVLMGLVEGYR----VNGGP---- 189
Query: 174 GSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICLVLC 226
A EGL+P YP G +PLGLA D E K+KEIKNG + + C
Sbjct: 190 --------AGEGLDPLYP-GEAFDPLGLADDPDTFAELKVKEIKNGRLAMFAC 233
>sp|P09756|CB23_SOYBN Chlorophyll a-b binding protein 3, chloroplastic OS=Glycine max
GN=CAB3 PE=3 SV=1
Length = 263
Score = 80.5 bits (197), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 84/175 (48%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G+
Sbjct: 62 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGV 121
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 122 KFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIA------ 175
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E +P YPGG +PLGLA D E K+KE+KNG + +
Sbjct: 176 -----GGPLG-----EVTDPIYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAM 219
Score = 32.7 bits (73), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 31/69 (44%)
Query: 79 FDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFK 138
FDPLGL +DPE+ EL + R AM + G ++ G E + AG V
Sbjct: 192 FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAGPVNNN 251
Query: 139 FASTRTLFI 147
+ T F+
Sbjct: 252 AWAYATNFV 260
>sp|P24006|CB2A_PYRPY Chlorophyll a-b binding protein 1A, chloroplastic OS=Pyrus
pyrifolia PE=2 SV=1
Length = 278
Score = 80.5 bits (197), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 84/175 (48%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G+
Sbjct: 77 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGV 136
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AGA F S ++ Q++LMG E R
Sbjct: 137 KFGEAVWFKAGAQIFSEGGLDYLGSPQLIHAQSILAIWACQVILMGAIEGYRV------- 189
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E +P YPGG +PLGLA D + K+KEIKNG + +
Sbjct: 190 ----AGGPLG-----EVTDPIYPGGN-FDPLGLADDPDAFADVKVKEIKNGRLAM 234
>sp|P08221|CB21_CUCSA Chlorophyll a-b binding protein of LHCII type I, chloroplastic
(Fragment) OS=Cucumis sativus PE=2 SV=1
Length = 255
Score = 80.1 bits (196), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 84/175 (48%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G+
Sbjct: 54 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGV 113
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 114 KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIA------ 167
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E +P YPGG +PLGLA D E K+KE+KNG + +
Sbjct: 168 -----GGPLG-----EVTDPIYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAM 211
Score = 31.6 bits (70), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 23/47 (48%)
Query: 79 FDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRE 125
FDPLGL +DPE+ EL + R AM + G ++ G E
Sbjct: 184 FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLE 230
>sp|P13851|CB21_SINAL Chlorophyll a-b binding protein 1, chloroplastic OS=Sinapis alba
GN=CAB1 PE=3 SV=1
Length = 266
Score = 80.1 bits (196), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 57/166 (34%), Positives = 81/166 (48%), Gaps = 13/166 (7%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 64 EPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPELLARNGV 123
Query: 124 R-ELPVWYEAGAVEFK-----FASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFF 177
+ VW++AG+ F + +L Q +L +A M + EG
Sbjct: 124 KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGEGPLG 183
Query: 178 GLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
E L YPGG +PLGLA D E K+KEIKNG + +
Sbjct: 184 EAEDLL------YPGGS-FDPLGLATDPEAFAELKVKEIKNGRLAM 222
>sp|P27495|CB24_TOBAC Chlorophyll a-b binding protein 40, chloroplastic OS=Nicotiana
tabacum GN=CAB40 PE=2 SV=1
Length = 267
Score = 79.7 bits (195), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 84/175 (48%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+ P YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 66 ESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 125
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 126 KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVA------ 179
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E ++P YPGG +PLGLA+D E K+KEIKNG + +
Sbjct: 180 -----GGPLG-----EVVDPLYPGGS-FDPLGLAEDPEAFAELKVKEIKNGRLAM 223
Score = 32.0 bits (71), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 23/47 (48%)
Query: 79 FDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRE 125
FDPLGL EDPE+ E+ + R AM + G ++ G E
Sbjct: 196 FDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE 242
>sp|P12469|CB23_NICPL Chlorophyll a-b binding protein C, chloroplastic OS=Nicotiana
plumbaginifolia GN=CABC PE=3 SV=1
Length = 267
Score = 79.3 bits (194), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 56/166 (33%), Positives = 83/166 (50%), Gaps = 14/166 (8%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+ P YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 66 ESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 125
Query: 124 R-ELPVWYEAGAVEFK-----FASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFF 177
+ VW++ G+ F + +L Q +L +A M + EG
Sbjct: 126 KFGEAVWFKGGSQIFSQGGLDYLGNPSLVHAQSILAIWACQVVLMGAV-------EGYRV 178
Query: 178 GLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
E E ++P YPGG +PLGLA+D E K+KEIKNG + +
Sbjct: 179 AGEPLGEVVDPLYPGGS-FDPLGLAEDPEAFAELKVKEIKNGRLAM 223
Score = 32.3 bits (72), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 23/47 (48%)
Query: 79 FDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRE 125
FDPLGL EDPE+ E+ + R AM + G ++ G E
Sbjct: 196 FDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE 242
>sp|P27492|CB21_TOBAC Chlorophyll a-b binding protein 16, chloroplastic OS=Nicotiana
tabacum GN=CAB16 PE=2 SV=1
Length = 266
Score = 79.3 bits (194), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 84/175 (48%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+ P YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 65 ESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 124
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 125 KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVA------ 178
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E ++P YPGG +PLGLA+D E K+KEIKNG + +
Sbjct: 179 -----GGPLG-----EVVDPLYPGGS-FDPLGLAEDPEAFAELKVKEIKNGRLAM 222
Score = 32.0 bits (71), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 23/47 (48%)
Query: 79 FDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRE 125
FDPLGL EDPE+ E+ + R AM + G ++ G E
Sbjct: 195 FDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE 241
>sp|P27493|CB22_TOBAC Chlorophyll a-b binding protein 21, chloroplastic OS=Nicotiana
tabacum GN=CAB21 PE=2 SV=1
Length = 265
Score = 79.3 bits (194), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 84/175 (48%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+ P YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 64 ESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 123
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 124 KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVA------ 177
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E ++P YPGG +PLGLA+D E K+KEIKNG + +
Sbjct: 178 -----GGPLG-----EVVDPLYPGGS-FDPLGLAEDPEAFAELKVKEIKNGRLAM 221
Score = 32.0 bits (71), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 23/47 (48%)
Query: 79 FDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRE 125
FDPLGL EDPE+ E+ + R AM + G ++ G E
Sbjct: 194 FDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE 240
>sp|P07370|CB2B_SOLLC Chlorophyll a-b binding protein 1B, chloroplastic OS=Solanum
lycopersicum GN=CAB1B PE=3 SV=1
Length = 265
Score = 79.3 bits (194), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 84/175 (48%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+ P YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 64 ESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 123
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 124 KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIA------ 177
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E ++P YPGG +PLGLA+D E K+KEIKNG + +
Sbjct: 178 -----GGPLG-----EVVDPLYPGGS-FDPLGLAEDPEAFAELKVKEIKNGRLAM 221
Score = 32.0 bits (71), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 23/47 (48%)
Query: 79 FDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRE 125
FDPLGL EDPE+ E+ + R AM + G ++ G E
Sbjct: 194 FDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE 240
>sp|P27490|CB28_PEA Chlorophyll a-b binding protein 8, chloroplastic OS=Pisum sativum
GN=CAB8 PE=1 SV=1
Length = 268
Score = 79.3 bits (194), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 57/175 (32%), Positives = 84/175 (48%), Gaps = 32/175 (18%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+ P YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G+
Sbjct: 67 ESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGV 126
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 127 KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIA------ 180
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E ++P YPGG +PLGLA D E K+KE+KNG + +
Sbjct: 181 -----GGPLG-----EVVDPLYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAM 224
Score = 31.6 bits (70), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 23/47 (48%)
Query: 79 FDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRE 125
FDPLGL +DPE+ EL + R AM + G ++ G E
Sbjct: 197 FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLE 243
>sp|P04781|CB23_PETSP Chlorophyll a-b binding protein 22R, chloroplastic OS=Petunia sp.
GN=CAB22R PE=3 SV=1
Length = 267
Score = 79.3 bits (194), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 74/237 (31%), Positives = 103/237 (43%), Gaps = 50/237 (21%)
Query: 15 SSSSFICNDVNKSSIGITSAFLPAKSGTTRRYLATVVRAQQRPTWLPGVDP--------- 65
SSSSF V SS +S+ + T R TV +A+ + P P
Sbjct: 9 SSSSFAGKAVKLSS---SSSEITGNGKVTMR--KTVTKAKPASSSSPWYGPDRVKYLGPF 63
Query: 66 ----PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVT 121
P YL G D+G+D GL DPE+ + E++H R+AM G G +F +L
Sbjct: 64 SGEAPSYLTGEFPSDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFARN 123
Query: 122 GIR-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYIS 166
GI+ VW++AGA F S ++ Q++LMG E R
Sbjct: 124 GIKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVA---- 179
Query: 167 PGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E ++P YPGG +PLGLA+D E K+KEIKNG + +
Sbjct: 180 -------GGPLG-----EVIDPLYPGGS-FDPLGLAEDPEAFAELKVKEIKNGRLAM 223
Score = 32.0 bits (71), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 23/47 (48%)
Query: 79 FDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRE 125
FDPLGL EDPE+ E+ + R AM + G ++ G E
Sbjct: 196 FDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE 242
>sp|P04782|CB24_PETSP Chlorophyll a-b binding protein 25, chloroplastic OS=Petunia sp.
GN=CAB25 PE=3 SV=1
Length = 266
Score = 79.3 bits (194), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 73/237 (30%), Positives = 102/237 (43%), Gaps = 51/237 (21%)
Query: 15 SSSSFICNDVNKSSIGITSAFLPAKSGTTRRYLATVVRAQQRPTWLPGVDP--------- 65
SSSSF VN S +S T R+ TV +A+ + P P
Sbjct: 9 SSSSFAGKAVNVPS---SSQITGNGKATMRK---TVTKAKPVSSGSPWYGPDRVKYLGPF 62
Query: 66 ----PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVT 121
P YL G GD+G+D GL DPE+ + E++H R+AM G G +F +L
Sbjct: 63 SGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFARN 122
Query: 122 GIR-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYIS 166
G++ VW++AG+ F S ++ Q++LMG E R
Sbjct: 123 GVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVA---- 178
Query: 167 PGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICL 223
G G E ++P YPGG +PLGLA D E K+KEIKNG + +
Sbjct: 179 -------GGPLG-----EVIDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAM 222
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.140 0.430
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 90,193,571
Number of Sequences: 539616
Number of extensions: 3883366
Number of successful extensions: 8421
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 8149
Number of HSP's gapped (non-prelim): 178
length of query: 226
length of database: 191,569,459
effective HSP length: 113
effective length of query: 113
effective length of database: 130,592,851
effective search space: 14756992163
effective search space used: 14756992163
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)