Query 027238
Match_columns 226
No_of_seqs 218 out of 1043
Neff 5.2
Searched_HMMs 46136
Date Fri Mar 29 06:59:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027238.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027238hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00147 light-harvesting comp 100.0 4.4E-57 9.6E-62 400.7 14.6 212 1-226 4-215 (252)
2 PLN00098 light-harvesting comp 100.0 6.4E-55 1.4E-59 389.5 15.5 175 49-226 55-230 (267)
3 PLN00097 photosystem I light h 100.0 7.3E-54 1.6E-58 378.4 14.1 175 49-226 37-212 (244)
4 PLN00101 Photosystem I light-h 100.0 2.9E-53 6.3E-58 375.8 15.6 167 52-226 49-215 (250)
5 PLN00170 photosystem II light- 100.0 1.5E-51 3.3E-56 365.4 13.3 201 16-226 14-236 (255)
6 PLN00048 photosystem I light h 100.0 6.5E-50 1.4E-54 356.8 12.2 173 52-226 38-225 (262)
7 PLN00100 light-harvesting comp 100.0 7.9E-49 1.7E-53 346.4 12.3 154 43-226 22-175 (246)
8 PLN00187 photosystem II light- 100.0 1.2E-48 2.6E-53 351.7 13.6 150 51-226 47-250 (286)
9 PLN00025 photosystem II light 100.0 2.1E-47 4.5E-52 340.5 13.2 159 51-226 46-221 (262)
10 PLN00099 light-harvesting comp 100.0 6.2E-47 1.3E-51 334.5 13.1 148 53-226 41-201 (243)
11 PLN00171 photosystem light-ha 100.0 4.5E-46 9.7E-51 338.9 12.9 167 50-226 102-288 (324)
12 PF00504 Chloroa_b-bind: Chlor 100.0 9.7E-41 2.1E-45 275.0 10.3 143 65-226 1-148 (156)
13 PLN00089 fucoxanthin-chlorophy 100.0 1.4E-39 3.1E-44 282.4 12.2 149 55-226 36-192 (209)
14 PLN00120 fucoxanthin-chlorophy 100.0 2.1E-32 4.6E-37 236.5 9.4 128 79-226 47-183 (202)
15 PLN00147 light-harvesting comp 99.6 1.8E-15 3.9E-20 135.1 5.4 59 66-124 172-230 (252)
16 PLN00048 photosystem I light h 99.5 3.3E-15 7.2E-20 134.0 5.0 55 70-124 186-240 (262)
17 PLN00089 fucoxanthin-chlorophy 99.5 5.2E-15 1.1E-19 128.9 5.8 54 71-124 153-207 (209)
18 PLN00025 photosystem II light 99.5 2.1E-14 4.6E-19 128.8 4.9 55 69-124 182-236 (262)
19 PLN00187 photosystem II light- 99.5 3E-14 6.5E-19 129.1 4.8 55 70-124 211-265 (286)
20 PLN00098 light-harvesting comp 99.4 8.6E-14 1.9E-18 125.2 5.1 55 70-124 190-245 (267)
21 PLN00099 light-harvesting comp 99.4 9.4E-14 2E-18 123.5 4.8 54 70-124 163-217 (243)
22 PLN00171 photosystem light-ha 99.4 2.4E-13 5.3E-18 124.8 4.7 52 73-124 252-303 (324)
23 PLN00097 photosystem I light h 99.4 2.9E-13 6.2E-18 120.4 4.8 51 73-124 177-227 (244)
24 PF00504 Chloroa_b-bind: Chlor 99.4 3E-13 6.5E-18 111.4 3.5 50 68-117 107-156 (156)
25 PLN00170 photosystem II light- 99.3 1.8E-12 3.9E-17 115.9 4.2 52 72-124 190-250 (255)
26 PLN00100 light-harvesting comp 99.3 2.5E-12 5.5E-17 114.4 3.7 48 72-124 143-190 (246)
27 PLN00101 Photosystem I light-h 99.2 5E-12 1.1E-16 112.9 3.7 48 72-124 183-230 (250)
28 PLN00120 fucoxanthin-chlorophy 99.2 1.5E-11 3.2E-16 106.8 5.2 50 71-120 142-194 (202)
29 PHA02337 putative high light i 97.7 4E-05 8.6E-10 49.4 2.7 29 96-124 4-32 (35)
30 PLN00014 light-harvesting-like 96.3 0.0021 4.5E-08 57.4 1.7 30 95-124 160-189 (250)
31 PHA02337 putative high light i 95.9 0.002 4.4E-08 41.6 -0.0 14 213-226 4-17 (35)
32 PLN00084 photosystem II subuni 95.3 0.0098 2.1E-07 51.2 2.0 36 89-124 130-166 (214)
33 PLN00084 photosystem II subuni 92.4 0.036 7.9E-07 47.8 -0.1 21 206-226 130-150 (214)
34 PLN00014 light-harvesting-like 86.8 0.19 4.1E-06 45.1 -0.1 15 212-226 160-174 (250)
35 COG3924 Predicted membrane pro 30.9 47 0.001 25.0 2.4 34 99-132 9-48 (80)
36 PHA00649 hypothetical protein 29.5 69 0.0015 24.0 3.1 36 81-117 25-68 (83)
37 KOG0593 Predicted protein kina 23.9 43 0.00093 32.0 1.4 33 87-120 160-198 (396)
38 PF00770 Peptidase_C5: Adenovi 23.8 41 0.00088 29.2 1.2 9 195-203 50-58 (183)
No 1
>PLN00147 light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional
Probab=100.00 E-value=4.4e-57 Score=400.74 Aligned_cols=212 Identities=78% Similarity=1.274 Sum_probs=179.7
Q ss_pred CceeccccceeccCCCCcccccCcCCCcccccccCCCCCccccCcchhhhhccCCCCcCCCCCCCCCCCCCCCCCCcCcc
Q 027238 1 MAVAVGRGFLLQPSSSSSFICNDVNKSSIGITSAFLPAKSGTTRRYLATVVRAQQRPTWLPGVDPPPYLDGTLAGDFGFD 80 (226)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~r~~~lP~~~~p~~l~G~~pGd~GfD 80 (226)
|++.+.+++..+++.+++..... +++.+ . ++.|. +.+++++|++|+|+.++|+||||++|||||||
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~--------~--~~~~~--~~~~~~~R~~wlP~~~~P~~Ldg~~pGD~GFD 69 (252)
T PLN00147 4 MAGGTTGGFLHQPRDSSSHCTRS--ISSVA--------A--SSGGI--NPVVAQERPTWLPGLDPPPHLDGTLAGDFGFD 69 (252)
T ss_pred eeeccCCceeeecccccchhhhh--hhhhh--------h--ccccC--cccCCCCccccCCCCCCCCcCCCCCCCccCCC
Confidence 56666777777877655555442 21211 0 12232 22456889999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHhhhcchhHhhhhHHHHhhhhhccCCCCChhhhhcccchhcccchhhHHHHHHHHHhHhhhhh
Q 027238 81 PLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKR 160 (226)
Q Consensus 81 PlGl~~d~e~l~~~r~aElkhGRlAMlA~~G~~~~e~~~~~G~~~~p~w~~aG~~~~~~~~~~~l~~~qll~iG~~E~~r 160 (226)
||||++|+++++|||++|||||||||||++|+++||+++..|+...|.||++|...+++.+.++++++|+++||++|.+|
T Consensus 70 Plgl~~d~~~~~~~r~aElkhGR~AMlA~~G~l~~e~~~~~g~~~~p~w~~ag~~~~~~~~~~~~~~~q~~~mG~~E~~R 149 (252)
T PLN00147 70 PLGLGEDPESLKWYVQAELVHSRFAMAGVAGILFTDLLRVTGIRNLPVWYEAGAVKFEFASTRTLFVVQLLLMGFAETKR 149 (252)
T ss_pred cccccCCHHHHHHHHHHHhhccHHHHHHHhhhhHHHHhccCCCcCCcchhhcccchhccccchHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999988887778899998766667777889999999999999999
Q ss_pred hccccCCCCCCCCCcchhhhhhhcCCCCCCCCCCCCCCCCCccCHHHHHHHHHHHHhhhhhhhccC
Q 027238 161 YMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICLVLC 226 (226)
Q Consensus 161 ~~~~~~pg~~~~~g~f~g~~~~~~g~~~~yPGd~gFDPLgl~~d~e~~~~~k~kEIkNGRLAMiAi 226 (226)
|.++.+|+++..++.|+|.+...++.+++||||++||||||.+|+++++++|+|||||||||||||
T Consensus 150 ~~~~~~pg~~~~~g~~~g~~~~~~~~~~~yPGd~~FDPlGl~~d~~~~~~~k~kEikNGRLAMlA~ 215 (252)
T PLN00147 150 YMDFVSPGSQAKEGSFFGLEAALEGLEPGYPGGPLFNPLGLAKDIENAHDWKLKEIKNGRLAMVAM 215 (252)
T ss_pred hccccCCCccccccccccccccccccCCCCcccccCCccccCCCHHHHHHHHHHHHHHhHHHHHHH
Confidence 999999998888888877766666677899999999999999999999999999999999999985
No 2
>PLN00098 light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional
Probab=100.00 E-value=6.4e-55 Score=389.48 Aligned_cols=175 Identities=45% Similarity=0.835 Sum_probs=151.2
Q ss_pred hhhccCCCCcCCCCCCCCCCCCCCCCCCcCccCCCCCCCHHHHHHHHHHHhhhcchhHhhhhHHHHhhhhhccCCCCChh
Q 027238 49 TVVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPV 128 (226)
Q Consensus 49 ~~~~~~~r~~~lP~~~~p~~l~G~~pGd~GfDPlGl~~d~e~l~~~r~aElkhGRlAMlA~~G~~~~e~~~~~G~~~~p~ 128 (226)
+.+++++|++|+|+.++|+||||++|||||||||||++|+++++|||++|||||||||||++|+++||+++..|++..+.
T Consensus 55 ~~~~~~~r~~w~Pg~~~P~~LdG~~pGD~GFDPlgl~~~~~~~~~~r~aEl~HGR~AMLA~~G~~~~e~l~~~g~~~~~~ 134 (267)
T PLN00098 55 CEPLPPDRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHSRWAMLAVAGILIPECLERLGFIENFS 134 (267)
T ss_pred cccCCCCccccCCCCCCCccCCCCCCCCCCcCccccCCCHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCcccccc
Confidence 33556899999999999999999999999999999999999999999999999999999999999999998888876678
Q ss_pred hhhcccchhcccchhhHHHHHHHHHhHhhhhhhccccCCCCCCCCCcchhhhhhhcCCCCCCCCCCCCCCCCCcc-CHHH
Q 027238 129 WYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAK-DIRN 207 (226)
Q Consensus 129 w~~aG~~~~~~~~~~~l~~~qll~iG~~E~~r~~~~~~pg~~~~~g~f~g~~~~~~g~~~~yPGd~gFDPLgl~~-d~e~ 207 (226)
||++|...| +.+..+++++|+++||++|.+||.++.++|++..++.|.+ ......+.+||||++||||||.+ |+++
T Consensus 135 w~~Ag~~~~-~~~~~~l~~~q~~lmG~~E~~R~~~~~~~g~~~~~~~~~~--~~~~~~d~~yPGg~~FDPlgl~~~d~~~ 211 (267)
T PLN00098 135 WYDAGAREY-FADPTTLFVVQMVLMGWAEGRRWADLIKPGCVDIEPKLPN--KTNPKPDVGYPGGLWFDPMMWGRGSPEP 211 (267)
T ss_pred cccccchhh-ccCchHHHHHHHHHHHHHHHHHhhcccCCccccccccccc--cccCCCCCCCCCCccCCcccCCCCCHHH
Confidence 999987655 5555678899999999999999999888887665544321 11122356899999999999976 9999
Q ss_pred HHHHHHHHHhhhhhhhccC
Q 027238 208 AREWKLKEIKNGLICLVLC 226 (226)
Q Consensus 208 ~~~~k~kEIkNGRLAMiAi 226 (226)
++++|+|||||||||||||
T Consensus 212 ~~~~k~kEikNGRLAM~A~ 230 (267)
T PLN00098 212 VMVLRTKEIKNGRLAMLAF 230 (267)
T ss_pred HHHHHHHHHhhhHHHHHHH
Confidence 9999999999999999985
No 3
>PLN00097 photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional
Probab=100.00 E-value=7.3e-54 Score=378.37 Aligned_cols=175 Identities=43% Similarity=0.823 Sum_probs=152.2
Q ss_pred hhhccCCCCcCCCCCCCCCCCCCCCCCCcCccCCCCCCCHHHHHHHHHHHhhhcchhHhhhhHHHHhhhhhccCCCCChh
Q 027238 49 TVVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPV 128 (226)
Q Consensus 49 ~~~~~~~r~~~lP~~~~p~~l~G~~pGd~GfDPlGl~~d~e~l~~~r~aElkhGRlAMlA~~G~~~~e~~~~~G~~~~p~ 128 (226)
++.++++|++|+|+.++|+||||++||||||||+||++|+++++|||++||+||||||||++||++||+++..|+...|.
T Consensus 37 ~~~~~~~R~~w~Pg~~~P~~LdG~~pGD~GfDPlGl~~~~~~~~~~r~aEl~hGR~AMLa~~G~lv~e~l~~~g~~~~p~ 116 (244)
T PLN00097 37 AVAAAADRPTWLPGKAAAAHLDGSLPCDYGFDPLNLGADPEMLKWFVQAELMHARWAMLGLAGCVAPELLTKIGMADLPN 116 (244)
T ss_pred ecccCCCCcccCCCCCCccccCCCCCCCCCCCccccCcCHHHHHHHHHHHHhcchHHHHHHhhhhHHHHhcCCCcccCCc
Confidence 44556799999999999999999999999999999999999999999999999999999999999999999888876788
Q ss_pred hhhcccch-hcccchhhHHHHHHHHHhHhhhhhhccccCCCCCCCCCcchhhhhhhcCCCCCCCCCCCCCCCCCccCHHH
Q 027238 129 WYEAGAVE-FKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRN 207 (226)
Q Consensus 129 w~~aG~~~-~~~~~~~~l~~~qll~iG~~E~~r~~~~~~pg~~~~~g~f~g~~~~~~g~~~~yPGd~gFDPLgl~~d~e~ 207 (226)
||++|... | +....+++++|+++||++|.+||.++++||++..++.| +.+...+..+.+|||+. ||||||.+|+++
T Consensus 117 W~~Ag~~~~~-~~~~~~l~~i~~~lmg~~E~~r~~~~~~pg~~~~~p~~-~~~~~~~~~d~gYPgg~-FDPlgl~~d~~~ 193 (244)
T PLN00097 117 WIDAAKWDGY-WAGAGPLFFIQMAMFNWAEIRRWQDMKAPGSMNEDPLF-GANKGDTNTDVGYPKGL-FDKFGWAKDEKK 193 (244)
T ss_pred cccCCcchhc-cccchhHHHHHHHHHHHHHHHHhhcccCCCcccccccc-ccccCCcccccCCCCCC-CCccccCCCHHH
Confidence 99998654 3 44556788899999999999999999999987665543 22222233466899997 999999999999
Q ss_pred HHHHHHHHHhhhhhhhccC
Q 027238 208 AREWKLKEIKNGLICLVLC 226 (226)
Q Consensus 208 ~~~~k~kEIkNGRLAMiAi 226 (226)
++++|+||||||||||+|+
T Consensus 194 ~~~lk~kEiknGRLAM~A~ 212 (244)
T PLN00097 194 AAELKLKEIANGRLAMLAF 212 (244)
T ss_pred HHHHHHHHHHhhHHHHHHH
Confidence 9999999999999999985
No 4
>PLN00101 Photosystem I light-harvesting complex type 4 protein; Provisional
Probab=100.00 E-value=2.9e-53 Score=375.83 Aligned_cols=167 Identities=46% Similarity=0.891 Sum_probs=147.1
Q ss_pred ccCCCCcCCCCCCCCCCCCCCCCCCcCccCCCCCCCHHHHHHHHHHHhhhcchhHhhhhHHHHhhhhhccCCCCChhhhh
Q 027238 52 RAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYE 131 (226)
Q Consensus 52 ~~~~r~~~lP~~~~p~~l~G~~pGd~GfDPlGl~~d~e~l~~~r~aElkhGRlAMlA~~G~~~~e~~~~~G~~~~p~w~~ 131 (226)
..++|+.|+|+.++|+||||++||||||||+||++|+++++|||++||+||||||||++|+++||++++.|++..|.||+
T Consensus 49 ~~~~r~~W~P~~~~P~~LdG~~PGD~GFDPlGl~~d~~~~~~~r~aEl~hGRlAMla~~G~l~~e~l~~~g~~~~p~w~~ 128 (250)
T PLN00101 49 VEAKKGEWLPGLASPGYLNGSLPGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIINAPQWYD 128 (250)
T ss_pred ccccccccCCCCCCCcccCCCCCCccCCCccccCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCCCCcCCCcccc
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999888889999
Q ss_pred cccchhcccchhhHHHHHHHHHhHhhhhhhccccCCCCCCCCCcchhhhhhhcCCCCCCCCCCCCCCCCCccCHHHHHHH
Q 027238 132 AGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREW 211 (226)
Q Consensus 132 aG~~~~~~~~~~~l~~~qll~iG~~E~~r~~~~~~pg~~~~~g~f~g~~~~~~g~~~~yPGd~gFDPLgl~~d~e~~~~~ 211 (226)
+|...| +....+++++|+++||++|.+||+++++||+++.++.|.+ ......|.+||||. ||||||+++ +++
T Consensus 129 ag~~~~-~~~~~~l~~ie~~~mg~~E~~R~~~~~~pG~~~~~~~~~~--~~~~~gd~~YPGG~-FDPLgl~~~----~~~ 200 (250)
T PLN00101 129 AGKAEY-FASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQ--YSLPPNEVGYPGGI-FNPLNFAPT----EEA 200 (250)
T ss_pred ccchhh-cccchHHHHHHHHHHHHHHHHHhhcccCCCcccccccccc--cccCCccccCCCCc-cCccCCCcc----HHH
Confidence 987665 5566788889999999999999999999998766655532 12233467899997 999999875 489
Q ss_pred HHHHHhhhhhhhccC
Q 027238 212 KLKEIKNGLICLVLC 226 (226)
Q Consensus 212 k~kEIkNGRLAMiAi 226 (226)
|+||||||||||||+
T Consensus 201 k~kEIKNGRLAM~A~ 215 (250)
T PLN00101 201 KEKELANGRLAMLAF 215 (250)
T ss_pred HHHHHhhcchHHHHH
Confidence 999999999999986
No 5
>PLN00170 photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional
Probab=100.00 E-value=1.5e-51 Score=365.41 Aligned_cols=201 Identities=43% Similarity=0.708 Sum_probs=159.3
Q ss_pred CCcccccCcCCCcccccccCCCCCccccCcchhhh-hccCCCCcCCCCCC------CCCCCCCCCCCCcCccCCCCCCCH
Q 027238 16 SSSFICNDVNKSSIGITSAFLPAKSGTTRRYLATV-VRAQQRPTWLPGVD------PPPYLDGTLAGDFGFDPLGLGEDP 88 (226)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~r~~~lP~~~------~p~~l~G~~pGd~GfDPlGl~~d~ 88 (226)
.|+|+.++ +|+.+...+..+.+ +++|++.|+ ++++.|+.|+|+.. +|+||||++||||||||+||++|+
T Consensus 14 ~ssf~~g~--~~~~~~~~~~~~~~--~~~~~~~v~~~a~~~~k~w~p~~~~~~~~~~P~~l~g~~PGd~GFDPlgl~~d~ 89 (255)
T PLN00170 14 GSSFLTGG--KRSLALLVGTGAAK--VGARTLLVVAAAAQPKKSWIPAVKGGGNLVDPEWLDGSLPGDYGFDPLGLGKDP 89 (255)
T ss_pred cCcccccc--hhhhcccccccccc--cccceeEEEEeccCCCccccCCCCCCcccCCcccccccCCCCCCcCccccCCCH
Confidence 89999887 66654333333333 345555443 55688999999985 699999999999999999999999
Q ss_pred HHHHHHHHHHhhhcchhHhhhhHHHHhhhhhccCCCCChhhhhcccchhccc--chhhHHHHHHHHHhHhhhhhhccccC
Q 027238 89 ESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFA--STRTLFIVQLLLMGFAETKRYMDYIS 166 (226)
Q Consensus 89 e~l~~~r~aElkhGRlAMlA~~G~~~~e~~~~~G~~~~p~w~~aG~~~~~~~--~~~~l~~~qll~iG~~E~~r~~~~~~ 166 (226)
++++|||++||+||||||||++||+++|+++.. .||++|...+.+. ++.+++++|+++||++|.+||+++++
T Consensus 90 e~~~~~r~~El~hGR~AMLa~~G~~v~e~l~g~------~w~~aG~~~~~~~p~~~~~l~~~q~~lmg~~E~~R~~~~~~ 163 (255)
T PLN00170 90 AFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI------PWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFN 163 (255)
T ss_pred HHHHHHHHHHhhccHHHHHHHHhhhhHHHccCC------ChhhCCccccccCccchHHHHHHHHHHhhhhhheeeccccC
Confidence 999999999999999999999999999998632 3999887532222 34678889999999999999999999
Q ss_pred CCCCCCCCcch----hhhhhhcCCCCCCCCCCCCCCCCCcc---------CHHHHHHHHHHHHhhhhhhhccC
Q 027238 167 PGSQTKEGSFF----GLEAALEGLEPGYPGGPLLNPLGLAK---------DIRNAREWKLKEIKNGLICLVLC 226 (226)
Q Consensus 167 pg~~~~~g~f~----g~~~~~~g~~~~yPGd~gFDPLgl~~---------d~e~~~~~k~kEIkNGRLAMiAi 226 (226)
|+++..++.+. ..+......+.+|||+..||||||.+ |+++++++|+||||||||||+|+
T Consensus 164 P~~~~~~~~~p~~~~~~~f~~~~g~~~yPGG~~FDPLGl~~~~~~~~~~~d~~~~~~lk~kEIKnGRLAMlA~ 236 (255)
T PLN00170 164 PDSQSVEWATPWSRTAENFANATGLQGYPGGKFFDPLGLAGTVKDGVYIPDFEKLERLKLAEIKHARLAMVAM 236 (255)
T ss_pred CcccccccccccccccccccccCCCcccCCCcccCccccccccccccccCCHHHHHHHHHHHHhhhHHHHHHH
Confidence 99876654311 01111223467899998899999985 78999999999999999999985
No 6
>PLN00048 photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional
Probab=100.00 E-value=6.5e-50 Score=356.79 Aligned_cols=173 Identities=45% Similarity=0.894 Sum_probs=143.4
Q ss_pred ccCCCCcCCCCCCCCCCCCCCCCCCcCccCCCCCCCHH------HHHHHHHHHhhhcchhHhhhhHHHHhhhhhccCCCC
Q 027238 52 RAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPE------SLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRE 125 (226)
Q Consensus 52 ~~~~r~~~lP~~~~p~~l~G~~pGd~GfDPlGl~~d~e------~l~~~r~aElkhGRlAMlA~~G~~~~e~~~~~G~~~ 125 (226)
++++|++|+|+.++|+||||++|||||||||||+ |++ +.+|+|++||+||||||||++||++||+++..|++.
T Consensus 38 ~~~~r~~w~p~~~~P~yLdG~lPGD~GFDPlGL~-~p~~~~~~~~~~~~r~aEL~hGR~AMLa~~G~lv~Ell~~~g~~~ 116 (262)
T PLN00048 38 QGADRQLWFASKQSLSYLDGTLPGDFGFDPLGLS-DPEGAGGFIEPQWLAYGEVINGRFAMLGAAGAIAPEILGKAGLIP 116 (262)
T ss_pred CCCCCceecCCCCCccccCCCCCCccCCCccccC-CccccccchhHHHHHHHHhhcchHHHHHHhhHHHHHHhccCCccc
Confidence 3558999999999999999999999999999997 443 579999999999999999999999999998777763
Q ss_pred C---hhhhhcccc----hhc-ccchhhHHHHHHHHHhHhhhhhhccccCCCCCCCCCcchhhhhhhcC-CCCCCCCCCCC
Q 027238 126 L---PVWYEAGAV----EFK-FASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEG-LEPGYPGGPLL 196 (226)
Q Consensus 126 ~---p~w~~aG~~----~~~-~~~~~~l~~~qll~iG~~E~~r~~~~~~pg~~~~~g~f~g~~~~~~g-~~~~yPGd~gF 196 (226)
. ..||++|.. .++ +....+++++|+++||++|.+|++++.+||+++.+ .|.+++..+.+ .++.||||++|
T Consensus 117 ~~~~~~w~~ag~~~~~~~~~y~~~p~~l~~~~~~lmg~~E~~R~~~~~~pG~~~~~-~~~~~~~~~~~~~d~~yPG~~~f 195 (262)
T PLN00048 117 QETALPWFQSGVIPPAGTYDYWADPYTLFVLEMALMGFAEHRRAQDYYKPGSMGKQ-YFLGLEKGLGGSGNPAYPGGPFF 195 (262)
T ss_pred cccccccccccccccccccccccchhHHHHHHHHHhhheeeeccccccCCCccccc-ccccchhcccccccccccccccc
Confidence 2 249998742 111 34444678889999999999999999999987643 33444444443 25679999999
Q ss_pred CCCCCccCHHHHHHHHHHHHhhhhhhhccC
Q 027238 197 NPLGLAKDIRNAREWKLKEIKNGLICLVLC 226 (226)
Q Consensus 197 DPLgl~~d~e~~~~~k~kEIkNGRLAMiAi 226 (226)
|||||.+|+|+++++|++|||||||||+|+
T Consensus 196 DPlGl~~~~e~~~~~k~~EiknGRLAM~A~ 225 (262)
T PLN00048 196 NPLGFGKDEKSMKELKLKEVKNGRLAMLAI 225 (262)
T ss_pred CccccccchHHHHHHHHHHHhhhHHHHHHh
Confidence 999999999999999999999999999986
No 7
>PLN00100 light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional
Probab=100.00 E-value=7.9e-49 Score=346.39 Aligned_cols=154 Identities=43% Similarity=0.783 Sum_probs=133.6
Q ss_pred cCcchhhhhccCCCCcCCCCCCCCCCCCCCCCCCcCccCCCCCCCHHHHHHHHHHHhhhcchhHhhhhHHHHhhhhhccC
Q 027238 43 TRRYLATVVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTG 122 (226)
Q Consensus 43 ~~r~~~~~~~~~~r~~~lP~~~~p~~l~G~~pGd~GfDPlGl~~d~e~l~~~r~aElkhGRlAMlA~~G~~~~e~~~~~G 122 (226)
..|+..+++++++|++|+|+.++|+||||++||||||||+||++|+++++|||++|||||||||||++|++++|+++.
T Consensus 22 ~~~~~~~~~~~~~r~~W~P~~~~P~~Ldg~~pGd~GFDPlgl~~~~~~~~~~r~aEl~hGR~AMla~~G~~~~E~~~~-- 99 (246)
T PLN00100 22 TTRRPRVRVAARARPMWYPGATAPKYLDGTMAGDYGFDPLRLGANPETLPYLQEAELMNGRWAMAATAGILFTDAVGL-- 99 (246)
T ss_pred cccccccccccCCCcccCCCCCCCCCCCCCCCCCcCCCccccCCCHHHHHHHHHHHhhcchHHHHHHhhhhHHHHhcc--
Confidence 455566777889999999999999999999999999999999999999999999999999999999999999999763
Q ss_pred CCCChhhhhcccchhcccchhhHHHHHHHHHhHhhhhhhccccCCCCCCCCCcchhhhhhhcCCCCCCCCCCCCCCCCCc
Q 027238 123 IRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLA 202 (226)
Q Consensus 123 ~~~~p~w~~aG~~~~~~~~~~~l~~~qll~iG~~E~~r~~~~~~pg~~~~~g~f~g~~~~~~g~~~~yPGd~gFDPLgl~ 202 (226)
|.|+++|...+. .+.++++++|+++||++|.+|+.++.+++ +.++|||++||||||.
T Consensus 100 ----P~w~~ag~~~~~-~~~~~l~~iqill~g~~E~~r~~~~~~~g------------------~~~~pg~~~FDPLGl~ 156 (246)
T PLN00100 100 ----PKFWEAGAEKYG-LDLQTLVLIQVVVMAVLEAARYRGFMKTG------------------ESGVLSFFPFDPTGMD 156 (246)
T ss_pred ----cchhhcchhhhc-cchhHHHHHHHHHHHHHhhhccccccccc------------------ccCCCCCCCCCccccc
Confidence 558888776553 34678889999999999999988764332 2346899999999996
Q ss_pred cCHHHHHHHHHHHHhhhhhhhccC
Q 027238 203 KDIRNAREWKLKEIKNGLICLVLC 226 (226)
Q Consensus 203 ~d~e~~~~~k~kEIkNGRLAMiAi 226 (226)
+ +++|+|||||||||||||
T Consensus 157 ~-----~~~K~KEIkNGRLAMlA~ 175 (246)
T PLN00100 157 S-----PEMKVKEVKNGRLAMLAF 175 (246)
T ss_pred H-----HHHHHHHHhhhhHHHHHH
Confidence 3 689999999999999986
No 8
>PLN00187 photosystem II light-harvesting complex II protein Lhcb4; Provisional
Probab=100.00 E-value=1.2e-48 Score=351.70 Aligned_cols=150 Identities=38% Similarity=0.761 Sum_probs=128.6
Q ss_pred hccCCCCcCCCCCCCCCCCCCCCCCCcCccCCCCCCCHHH----------------------------------------
Q 027238 51 VRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPES---------------------------------------- 90 (226)
Q Consensus 51 ~~~~~r~~~lP~~~~p~~l~G~~pGd~GfDPlGl~~d~e~---------------------------------------- 90 (226)
.+.++|++|+|+.++|+||||++|||||||||||++|||.
T Consensus 47 ~~~~~r~~w~p~~~~P~~LdGslpGD~GfDplgL~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 126 (286)
T PLN00187 47 KVGADRPLWFPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLAGDVIGTRTEASEIKSTPFQPYSE 126 (286)
T ss_pred CCCCCccccCCCCCCcccccCCCCCcCCCCcccccCChHhhhhcccchhhhhhhcccccccccccccccccccccCcchh
Confidence 4567899999999999999999999999999999999986
Q ss_pred ---HHHHHHHHhhhcchhHhhhhHHHHhhhhhccCCCCChhhhhcccch------hccc-----chhhHHHHHHHHHhHh
Q 027238 91 ---LRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVE------FKFA-----STRTLFIVQLLLMGFA 156 (226)
Q Consensus 91 ---l~~~r~aElkhGRlAMlA~~G~~~~e~~~~~G~~~~p~w~~aG~~~------~~~~-----~~~~l~~~qll~iG~~ 156 (226)
++||||+||+||||||||++||+++|++++ . .|+++|... | +. ++++++++|+++||++
T Consensus 127 ~f~l~r~REaELiHGRwAMLAvaG~lvpEll~G--~----~W~~aG~~~~~~g~~y-~g~~~p~~~~~l~~iqvllmG~~ 199 (286)
T PLN00187 127 VFGLQRFRECELIHGRWAMLATLGALSVEALTG--V----TWQDAGKVELVDGSSY-LGQPLPFSITTLIWIEVLVIGYI 199 (286)
T ss_pred hhHHHHHHHHHhhhhHHHHHHhhchhhHHhccC--C----cccccccccccccccc-cccccchhHHHHHHHHHHHHHHH
Confidence 699999999999999999999999999852 2 277776532 2 11 2467889999999999
Q ss_pred hhhhhccccCCCCCCCCCcchhhhhhhcCCCCCCCCCCCCCCCCCccCHHHHHHHHHHHHhhhhhhhccC
Q 027238 157 ETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICLVLC 226 (226)
Q Consensus 157 E~~r~~~~~~pg~~~~~g~f~g~~~~~~g~~~~yPGd~gFDPLgl~~d~e~~~~~k~kEIkNGRLAMiAi 226 (226)
|.+|+.+. . ..+..||||++||||||.+|+++++++|++|||||||||+|+
T Consensus 200 E~~R~~~~---~----------------~~~~~yPGg~~FDPlGl~~d~e~~~~~k~kEIkNGRLAMlA~ 250 (286)
T PLN00187 200 EFQRNAEL---D----------------PEKRLYPGGKFFDPLGLAADPEKKETLQLAEIKHARLAMVAF 250 (286)
T ss_pred HhhhccCC---C----------------CCCCCCCccccccccccCCCHHHHHHHHHHHHhhhHHHHHHH
Confidence 99997542 0 124569999889999999999999999999999999999985
No 9
>PLN00025 photosystem II light harvesting chlorophyll a/b binding protein; Provisional
Probab=100.00 E-value=2.1e-47 Score=340.47 Aligned_cols=159 Identities=40% Similarity=0.707 Sum_probs=133.4
Q ss_pred hccCCCCcCC-CCC-CCCCCCCCCCCCCcCccCCCCCCCHHHHHHHHHHHhhhcchhHhhhhHHHHhhhhhccCCC-CCh
Q 027238 51 VRAQQRPTWL-PGV-DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR-ELP 127 (226)
Q Consensus 51 ~~~~~r~~~l-P~~-~~p~~l~G~~pGd~GfDPlGl~~d~e~l~~~r~aElkhGRlAMlA~~G~~~~e~~~~~G~~-~~p 127 (226)
+..++|++|| |+. ++|+||||++||||||||+||++|+++++|||++||+||||||||++||+++|+++..|+. ..+
T Consensus 46 ~~g~~R~~~l~p~~~~~P~~Ldg~~pGD~GfDPlGls~dp~~~~~~re~El~hGR~AMLa~~G~i~~e~l~~~g~~~~~~ 125 (262)
T PLN00025 46 WYGPDRPKYLGPFSGETPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHARWAMLGALGCVTPELLAKNGVKFGEA 125 (262)
T ss_pred ccCCCCccccCCcccCCcccccCcCCCCCCCCccccccCHHHHHHHHHHHHhccHHHHHHHhhhhhHHHhhcCCcCcCcc
Confidence 4578999999 776 6899999999999999999999999999999999999999999999999999998876653 345
Q ss_pred hhhhcccchhc------c--------cchhhHHHHHHHHHhHhhhhhhccccCCCCCCCCCcchhhhhhhcCCCCCCCCC
Q 027238 128 VWYEAGAVEFK------F--------ASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGG 193 (226)
Q Consensus 128 ~w~~aG~~~~~------~--------~~~~~l~~~qll~iG~~E~~r~~~~~~pg~~~~~g~f~g~~~~~~g~~~~yPGd 193 (226)
.||++|...+. + .++.+++++|+++||++|.+|+.+. +. .++.++.||||
T Consensus 126 ~W~~ag~~~~~~gg~~y~~~p~~~~~~~~~a~~~~qv~lmg~~E~~r~~~~--~~--------------~~~~d~~yPG~ 189 (262)
T PLN00025 126 VWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVNGG--PL--------------GEGLDPLYPGG 189 (262)
T ss_pred cccccccccccccccccccCcccchhhhHHHHHHHHHHHHHHHHHhcccCC--cc--------------cccccCcCCcc
Confidence 79988753210 1 2345678889999999999998651 11 01235679999
Q ss_pred CCCCCCCCccCHHHHHHHHHHHHhhhhhhhccC
Q 027238 194 PLLNPLGLAKDIRNAREWKLKEIKNGLICLVLC 226 (226)
Q Consensus 194 ~gFDPLgl~~d~e~~~~~k~kEIkNGRLAMiAi 226 (226)
+ ||||||.+|+++++++|+||||||||||+||
T Consensus 190 ~-FDPlGl~~d~~~~~~~k~kEikNGRLAMlA~ 221 (262)
T PLN00025 190 S-FDPLGLADDPDTFAELKVKEIKNGRLAMFSM 221 (262)
T ss_pred c-CCccccCCCHHHHHHHHHHHHhhhhHHHHHH
Confidence 9 9999999999999999999999999999986
No 10
>PLN00099 light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional
Probab=100.00 E-value=6.2e-47 Score=334.54 Aligned_cols=148 Identities=41% Similarity=0.807 Sum_probs=124.0
Q ss_pred cCCCCcCCCCCCCCCCCCCCCCCCcCccCCCCCCCHHHHHHHHHHHhhhcchhHhhhhHHHHhhhhhccCCCCChhhhhc
Q 027238 53 AQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEA 132 (226)
Q Consensus 53 ~~~r~~~lP~~~~p~~l~G~~pGd~GfDPlGl~~d~e~l~~~r~aElkhGRlAMlA~~G~~~~e~~~~~G~~~~p~w~~a 132 (226)
.++|..|+|+.++|+||||++||||||||+||++++++++|||++|||||||||||++|+++||+++.. .|+++
T Consensus 41 ~~~~~~w~P~~~~P~~Ldg~~pgd~GfDPlgls~~~~~~~~~r~~ELkHGR~AMLAv~G~i~~E~l~~~------~w~~a 114 (243)
T PLN00099 41 VTMSADWMPGQPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLG------NWVKA 114 (243)
T ss_pred ccccccccCCCCCCccCCCCCCcccCCCccccccCHHHHHHHHHHhccCCcHHHHHHhhHHHHHHhccC------Ccccc
Confidence 356789999999999999999999999999999999999999999999999999999999999997642 24443
Q ss_pred c--------cchh-----cccchhhHHHHHHHHHhHhhhhhhccccCCCCCCCCCcchhhhhhhcCCCCCCCCCCCCCCC
Q 027238 133 G--------AVEF-----KFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPL 199 (226)
Q Consensus 133 G--------~~~~-----~~~~~~~l~~~qll~iG~~E~~r~~~~~~pg~~~~~g~f~g~~~~~~g~~~~yPGd~gFDPL 199 (226)
+ ...| .+..+++++++|+++||++|.+|+... + ..+..|||| .||||
T Consensus 115 ~~~~~~~~g~~~~~g~~~~~~~l~~~~~iqvl~ig~~E~~r~~~~---~----------------~~~~~yPGd-~FDPl 174 (243)
T PLN00099 115 QEWAAIPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRSMEK---D----------------PEKKKYPGG-AFDPL 174 (243)
T ss_pred cchhccCcchhhhccCccchhhHHHHHHHHHHHHHHHHHHhhccC---C----------------CCCCcCCCC-cCCcc
Confidence 2 2222 123467888999999999999876321 0 013469999 69999
Q ss_pred CCccCHHHHHHHHHHHHhhhhhhhccC
Q 027238 200 GLAKDIRNAREWKLKEIKNGLICLVLC 226 (226)
Q Consensus 200 gl~~d~e~~~~~k~kEIkNGRLAMiAi 226 (226)
||.+|+++++++|+|||||||||||||
T Consensus 175 Gl~kd~~~~~~~k~kELkNGRLAMiA~ 201 (243)
T PLN00099 175 GYSKDPKKFEEYKVKEIKNGRLALLAF 201 (243)
T ss_pred cccCCHHHHHHHHHHHHHhhHHHHHHH
Confidence 999999999999999999999999985
No 11
>PLN00171 photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional
Probab=100.00 E-value=4.5e-46 Score=338.94 Aligned_cols=167 Identities=37% Similarity=0.650 Sum_probs=136.3
Q ss_pred hhccCCCCcCCCCC--CCCCCCCCCCCCCcCccCCCCCCCHHHHHHHHHHHhhhcchhHhhhhHHHHhhhhhccCCCC--
Q 027238 50 VVRAQQRPTWLPGV--DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRE-- 125 (226)
Q Consensus 50 ~~~~~~r~~~lP~~--~~p~~l~G~~pGd~GfDPlGl~~d~e~l~~~r~aElkhGRlAMlA~~G~~~~e~~~~~G~~~-- 125 (226)
.+.+++|++|+|.. ++|+||||++|||||||||||++|+++++|||++|||||||||||++|+++||++++.|...
T Consensus 102 ~~~g~~R~~wl~~~~~~~P~yLdG~lpGD~GFDPLGL~~dp~~l~~~reaELkHGR~AMLA~~G~lv~e~l~~~g~~~~~ 181 (324)
T PLN00171 102 FWYGEERPRWLGPIPYDYPDHLTGELPGDYGFDIAGLGKDPVAFDKYFNFEILHARWAMLAALGVVIPEVLDLFGAVHFA 181 (324)
T ss_pred cccCCCCccccCCCCCCCCcccCCCCCcccCCCccccccCHHHHHHHHHHHhccchHHHHHHhhHHHHHHhccCCccccC
Confidence 35678999999776 69999999999999999999999999999999999999999999999999999988776542
Q ss_pred Chhhhhcccchh-----cc-----------cchhhHHHHHHHHHhHhhhhhhccccCCCCCCCCCcchhhhhhhcCCCCC
Q 027238 126 LPVWYEAGAVEF-----KF-----------ASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPG 189 (226)
Q Consensus 126 ~p~w~~aG~~~~-----~~-----------~~~~~l~~~qll~iG~~E~~r~~~~~~pg~~~~~g~f~g~~~~~~g~~~~ 189 (226)
.|.||++|...+ ++ ..+..++++|+++|+.+|.+|+.++.+++.. +. ..+ .|.+
T Consensus 182 ~p~W~~aG~~~~~g~~~~y~~~p~~~~~~~q~l~~i~~iEillm~g~E~~R~~~~~~~~~~---g~------~~P-GD~g 251 (324)
T PLN00171 182 EPVWWRVGYAKLQGDTLDYLGIPGLHIAGSQGVIVIAICQALLMVGPEYARYCGIEALEPL---GI------YLP-GDIN 251 (324)
T ss_pred ccchhhcccccccccchhhccCCccccchhHHHHHHHHHHHHHhhhhhheeeccccccCCc---cc------cCC-Cccc
Confidence 367999875321 11 1234567889988888999998876432210 01 112 3567
Q ss_pred CCCCCCCCCCCCccCHHHHHHHHHHHHhhhhhhhccC
Q 027238 190 YPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICLVLC 226 (226)
Q Consensus 190 yPGd~gFDPLgl~~d~e~~~~~k~kEIkNGRLAMiAi 226 (226)
|||+.+||||||.+|+++++++|++|||||||||+||
T Consensus 252 YPGG~~FDPLGl~~d~~~~~~~k~kELkNGRLAM~A~ 288 (324)
T PLN00171 252 YPGGALFDPLGLSKDPVAFEDLKVKEIKNGRLAMVAW 288 (324)
T ss_pred CCcccCCCccccCCCHHHHHHHHHHHHhhhHHHHHHH
Confidence 9999889999999999999999999999999999986
No 12
>PF00504 Chloroa_b-bind: Chlorophyll A-B binding protein; InterPro: IPR022796 The light-harvesting complex (LHC) consists of chlorophylls A and B and the chlorophyll A-B binding protein. LHC functions as a light receptor that captures and delivers excitation energy to photosystems I and II with which it is closely associated. Under changing light conditions, the reversible phosphorylation of light harvesting chlorophyll a/b binding proteins (LHCII) represents a system for balancing the excitation energy between the two photosystems []. The N terminus of the chlorophyll A-B binding protein extends into the stroma where it is involved with adhesion of granal membranes and photo-regulated by reversible phosphorylation of its threonine residues []. Both these processes are believed to mediate the distribution of excitation energy between photosystems I and II. This family also includes the photosystem II protein PsbS, which plays a role in energy-dependent quenching that increases thermal dissipation of excess absorbed light energy in the photosystem [].; PDB: 2O01_2 2WSF_2 2WSC_2 3LW5_2 2WSE_2 1RWT_D 2BHW_C 1VCR_A.
Probab=100.00 E-value=9.7e-41 Score=274.97 Aligned_cols=143 Identities=41% Similarity=0.720 Sum_probs=114.9
Q ss_pred CCCCCCCCCCCCcCccCCCCCCCHHHHHHHHHHHhhhcchhHhhhhHHHHhhhhhcc-CC---CCChhhhhcccchhccc
Q 027238 65 PPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVT-GI---RELPVWYEAGAVEFKFA 140 (226)
Q Consensus 65 ~p~~l~G~~pGd~GfDPlGl~~d~e~l~~~r~aElkhGRlAMlA~~G~~~~e~~~~~-G~---~~~p~w~~aG~~~~~~~ 140 (226)
+|++|||+++||+||||+||++++ +++|+|++||||||+||||++|++++|+++.. +. ...|.|++++. +
T Consensus 1 ~p~~l~G~~~~~~gfDPlgl~~~~-~~~~~R~aEl~hGR~AMLa~~g~~v~e~~~~~~~~~~~~~~~~~~~~~~----~- 74 (156)
T PF00504_consen 1 PPPYLDGSVPGDYGFDPLGLSSDP-DFAWYREAELKHGRVAMLAFVGALVQEAGTGFPGVPSFLGQPAWAEAGG----I- 74 (156)
T ss_dssp --TTTTSTSTTSTSSSTTTTTTSH-HHHHHHHHHHHHHHHHHHHHHHHHHCHCHSTTTSSS-SSTSSSSSSTTS----S-
T ss_pred CcccccCCCCCCCCCChhhcccch-hHHHHHHhHHHhhhhhhhhhHHHHHHHHhccCCcccccccccchhhhhh----h-
Confidence 589999999999999999999887 99999999999999999999999999998653 22 23345665431 2
Q ss_pred chhhHHHHHH-HHHhHhhhhhhccccCCCCCCCCCcchhhhhhhcCCCCCCCCCCCCCCCCCccCHHHHHHHHHHHHhhh
Q 027238 141 STRTLFIVQL-LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNG 219 (226)
Q Consensus 141 ~~~~l~~~ql-l~iG~~E~~r~~~~~~pg~~~~~g~f~g~~~~~~g~~~~yPGd~gFDPLgl~~d~e~~~~~k~kEIkNG 219 (226)
+++..+++|+ ++||++|.++..+...+... ...+..||||++|||+|+.+|++.++++|++|||||
T Consensus 75 ~~~~~~~~~~l~~ig~~e~~~~~~~~~~~~~-------------~~~~~~~pG~~~~dplgl~~~~~~~~~~~~~El~NG 141 (156)
T PF00504_consen 75 PVPAAGWAQILLFIGALEPWRQQGVPEPGEG-------------GGKDGRYPGDLGFDPLGLAKDPEEKEFMQLAELKNG 141 (156)
T ss_dssp SSHSHHHHHHHHHHHHHHHHHHHHTTTCCTT-------------SSSSSSSSSSSSSSTSSTSSSCHSHHCHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHhHhhhhhcccccCCccc-------------ccccccCccccccchhhhhhhhhhhHHHHHHHHHHH
Confidence 2566677665 78999999998765433210 012456899999999999989999999999999999
Q ss_pred hhhhccC
Q 027238 220 LICLVLC 226 (226)
Q Consensus 220 RLAMiAi 226 (226)
|||||||
T Consensus 142 RlAMla~ 148 (156)
T PF00504_consen 142 RLAMLAF 148 (156)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999985
No 13
>PLN00089 fucoxanthin-chlorophyll a/c binding protein; Provisional
Probab=100.00 E-value=1.4e-39 Score=282.40 Aligned_cols=149 Identities=30% Similarity=0.408 Sum_probs=114.5
Q ss_pred CCCcCCCCCCCCCCCCCCCCCCcCccCCCCCC-CHHHHHHHHHHHhhhcchhHhhhhHHHHhhhhhccCCC----CChhh
Q 027238 55 QRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGE-DPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR----ELPVW 129 (226)
Q Consensus 55 ~r~~~lP~~~~p~~l~G~~pGd~GfDPlGl~~-d~e~l~~~r~aElkhGRlAMlA~~G~~~~e~~~~~G~~----~~p~w 129 (226)
+.+...|+.+.|+.|||. .||++|||+||++ ++++++|||++|||||||||||++|+++||+++++|.+ +.|.|
T Consensus 36 ~~~g~~pf~~~~p~l~g~-~Gd~~fDPlgl~~~~~~~~~~~r~~ElkhGR~AMlA~~G~~~~~~~~~pG~~~~~~~~p~~ 114 (209)
T PLN00089 36 DCPGAIGFAAKEFMFIGK-TGSKKFDPLGLAEKVEEFLPWFRESELKHGRAAMLAVAGFIAPDFVRIPGEAYSFAAIPKT 114 (209)
T ss_pred hcccccccccCCccccCC-CCccCcCCccCCCCCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCccccccccccH
Confidence 334567888888899999 9999999999985 67889999999999999999999999999999988854 12223
Q ss_pred hhcccchhcccchhhHH-HHHH-HHHhHhhhhhhccccCCCCCCCCCcchhhhhhhcCCCCCCCCCCCCCCCCCc-cCHH
Q 027238 130 YEAGAVEFKFASTRTLF-IVQL-LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLA-KDIR 206 (226)
Q Consensus 130 ~~aG~~~~~~~~~~~l~-~~ql-l~iG~~E~~r~~~~~~pg~~~~~g~f~g~~~~~~g~~~~yPGd~gFDPLgl~-~d~e 206 (226)
+++ +..++..+ ++|+ ++||++|+.... +.... .. .+.+||||++||||||. +|++
T Consensus 115 ~~a------~~~~~~~g~~~Qi~~~ig~~E~~~~~----~~~~~----------~~--~~~~~PGd~gfdplgl~~~d~~ 172 (209)
T PLN00089 115 IDA------HDALLKSGAMIQIFAWIGFVDLAVSA----PAAAA----------AA--EFDRTPGDFGFDLLALYPKDAA 172 (209)
T ss_pred HHH------HHhhcccccHHHHHHHHHHHHHHHhh----ccccc----------cc--cCCCCCCCcCccccccCCCCHH
Confidence 221 22333333 6797 579999964321 11100 00 12358999999999995 4899
Q ss_pred HHHHHHHHHHhhhhhhhccC
Q 027238 207 NAREWKLKEIKNGLICLVLC 226 (226)
Q Consensus 207 ~~~~~k~kEIkNGRLAMiAi 226 (226)
+++++|++||||||||||||
T Consensus 173 ~~~~~~~~El~NGRlAM~a~ 192 (209)
T PLN00089 173 KMEKKKDKELKNGRLAMVAI 192 (209)
T ss_pred HHHHHHHHHHhhhHHHHHHH
Confidence 99999999999999999985
No 14
>PLN00120 fucoxanthin-chlorophyll a-c binding protein; Provisional
Probab=99.97 E-value=2.1e-32 Score=236.52 Aligned_cols=128 Identities=24% Similarity=0.323 Sum_probs=93.5
Q ss_pred ccCCCCC--CCHHHHHHHHHHHhhhcchhHhhhhHHHHhhh-hhccCCCCCh-hhhhcccch-hcccchhhHHHHHH-HH
Q 027238 79 FDPLGLG--EDPESLRWYVQAELVHARFAMAGVAGILFTDL-LRVTGIRELP-VWYEAGAVE-FKFASTRTLFIVQL-LL 152 (226)
Q Consensus 79 fDPlGl~--~d~e~l~~~r~aElkhGRlAMlA~~G~~~~e~-~~~~G~~~~p-~w~~aG~~~-~~~~~~~~l~~~ql-l~ 152 (226)
|||+||+ +|+++++|||++|||||||||||++|+++|++ ++++|..+.. ..|..-... ..+..++..+|+|| ++
T Consensus 47 fDPlgl~~~~~~~~~~~~r~~ElkhGRlAMlA~~G~~~~~~g~~~Pg~~~~~g~~~~~~p~~~~a~~~vp~~g~~qi~~~ 126 (202)
T PLN00120 47 FDPLGLVDDGDQEKFDRLRYVEIKHGRISMLAVVGYLVTEAGIRLPGDIDYSGTSFSDIPNGFAALDAIPTAGLLQILAF 126 (202)
T ss_pred CCCCccCCCCCHHHHHHHHHHHhhcccHHHHhhccceeecccccCCCccccccccccccccchhhhhhcchhHHHHHHHH
Confidence 9999996 47999999999999999999999999999997 7777765321 122210000 11456778889997 78
Q ss_pred HhHhhhhhhccccCCCCCCCCCcchhhhhhhcCCCCCCCCCCCCC--CCCCcc-CHHHHHHHHHHHHhhhhhhhccC
Q 027238 153 MGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLN--PLGLAK-DIRNAREWKLKEIKNGLICLVLC 226 (226)
Q Consensus 153 iG~~E~~r~~~~~~pg~~~~~g~f~g~~~~~~g~~~~yPGd~gFD--PLgl~~-d~e~~~~~k~kEIkNGRLAMiAi 226 (226)
||++|+.++.+.. + +..+|||+.++ ++||.+ |+|+++++|+|||||||||||||
T Consensus 127 ig~~E~~~~~~~~--~------------------~~~~pGd~~~g~~d~gfdp~~~~~~~~~~~~EL~NGRLAMiai 183 (202)
T PLN00120 127 IGFLELAVMKDIT--G------------------EGEFVGDFRNGYIDFGWDSFDEETKLKKRAIELNQGRAAQMGI 183 (202)
T ss_pred HHHHHHHhhcccc--c------------------CCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999987654321 0 12357754222 444444 89999999999999999999986
No 15
>PLN00147 light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional
Probab=99.57 E-value=1.8e-15 Score=135.05 Aligned_cols=59 Identities=27% Similarity=0.352 Sum_probs=54.2
Q ss_pred CCCCCCCCCCCcCccCCCCCCCHHHHHHHHHHHhhhcchhHhhhhHHHHhhhhhccCCC
Q 027238 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR 124 (226)
Q Consensus 66 p~~l~G~~pGd~GfDPlGl~~d~e~l~~~r~aElkhGRlAMlA~~G~~~~e~~~~~G~~ 124 (226)
+..+++.+|||++|||+||++|+++++++|.+|||||||||+|++|+++|+++++.|++
T Consensus 172 ~~~~~~~yPGd~~FDPlGl~~d~~~~~~~k~kEikNGRLAMlA~~G~~~q~~vtg~Gp~ 230 (252)
T PLN00147 172 LEGLEPGYPGGPLFNPLGLAKDIENAHDWKLKEIKNGRLAMVAMLGFFVQASVTHTGPI 230 (252)
T ss_pred ccccCCCCcccccCCccccCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCChH
Confidence 34566779999999999999999999999999999999999999999999999987765
No 16
>PLN00048 photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional
Probab=99.55 E-value=3.3e-15 Score=134.02 Aligned_cols=55 Identities=27% Similarity=0.445 Sum_probs=51.3
Q ss_pred CCCCCCCcCccCCCCCCCHHHHHHHHHHHhhhcchhHhhhhHHHHhhhhhccCCC
Q 027238 70 DGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR 124 (226)
Q Consensus 70 ~G~~pGd~GfDPlGl~~d~e~l~~~r~aElkhGRlAMlA~~G~~~~e~~~~~G~~ 124 (226)
|..+|||++|||+||++|+|+++++|.+|||||||||+|++||++|+++++.|++
T Consensus 186 d~~yPG~~~fDPlGl~~~~e~~~~~k~~EiknGRLAM~A~~G~~~q~~~tg~gp~ 240 (262)
T PLN00048 186 NPAYPGGPFFNPLGFGKDEKSMKELKLKEVKNGRLAMLAILGYFIQALVTGVGPF 240 (262)
T ss_pred ccccccccccCccccccchHHHHHHHHHHHhhhHHHHHHhhhHhhhhhhcCCCHH
Confidence 3469999999999999999999999999999999999999999999999987764
No 17
>PLN00089 fucoxanthin-chlorophyll a/c binding protein; Provisional
Probab=99.55 E-value=5.2e-15 Score=128.94 Aligned_cols=54 Identities=31% Similarity=0.489 Sum_probs=49.9
Q ss_pred CCCCCCcCccCCCC-CCCHHHHHHHHHHHhhhcchhHhhhhHHHHhhhhhccCCC
Q 027238 71 GTLAGDFGFDPLGL-GEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR 124 (226)
Q Consensus 71 G~~pGd~GfDPlGl-~~d~e~l~~~r~aElkhGRlAMlA~~G~~~~e~~~~~G~~ 124 (226)
+++|||+||||+|| .+|+++++++|.+||||||+||+|++|+++|+++++.|++
T Consensus 153 ~~~PGd~gfdplgl~~~d~~~~~~~~~~El~NGRlAM~a~~g~~~~~~~tg~g~~ 207 (209)
T PLN00089 153 DRTPGDFGFDLLALYPKDAAKMEKKKDKELKNGRLAMVAIGGIATGSAITGHGFP 207 (209)
T ss_pred CCCCCCcCccccccCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCCC
Confidence 46899999999999 4689999999999999999999999999999999887764
No 18
>PLN00025 photosystem II light harvesting chlorophyll a/b binding protein; Provisional
Probab=99.49 E-value=2.1e-14 Score=128.80 Aligned_cols=55 Identities=31% Similarity=0.526 Sum_probs=51.4
Q ss_pred CCCCCCCCcCccCCCCCCCHHHHHHHHHHHhhhcchhHhhhhHHHHhhhhhccCCC
Q 027238 69 LDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR 124 (226)
Q Consensus 69 l~G~~pGd~GfDPlGl~~d~e~l~~~r~aElkhGRlAMlA~~G~~~~e~~~~~G~~ 124 (226)
.|..+|||+ ||||||++|+++++++|.+|||||||||+|++|+++|+++++.|++
T Consensus 182 ~d~~yPG~~-FDPlGl~~d~~~~~~~k~kEikNGRLAMlA~~G~~~q~~vTG~GPl 236 (262)
T PLN00025 182 LDPLYPGGS-FDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 236 (262)
T ss_pred ccCcCCccc-CCccccCCCHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhhcCCChH
Confidence 356799999 9999999999999999999999999999999999999999987765
No 19
>PLN00187 photosystem II light-harvesting complex II protein Lhcb4; Provisional
Probab=99.47 E-value=3e-14 Score=129.12 Aligned_cols=55 Identities=35% Similarity=0.422 Sum_probs=51.5
Q ss_pred CCCCCCCcCccCCCCCCCHHHHHHHHHHHhhhcchhHhhhhHHHHhhhhhccCCC
Q 027238 70 DGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR 124 (226)
Q Consensus 70 ~G~~pGd~GfDPlGl~~d~e~l~~~r~aElkhGRlAMlA~~G~~~~e~~~~~G~~ 124 (226)
+..+|||++|||+||++|+++++++|.+|||||||||+|++||++|+++++.|++
T Consensus 211 ~~~yPGg~~FDPlGl~~d~e~~~~~k~kEIkNGRLAMlA~lG~~vq~~vtg~GPi 265 (286)
T PLN00187 211 KRLYPGGKFFDPLGLAADPEKKETLQLAEIKHARLAMVAFLGFAVQAAATGKGPL 265 (286)
T ss_pred CCCCCccccccccccCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCChH
Confidence 4568999999999999999999999999999999999999999999999987765
No 20
>PLN00098 light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional
Probab=99.44 E-value=8.6e-14 Score=125.18 Aligned_cols=55 Identities=27% Similarity=0.421 Sum_probs=50.4
Q ss_pred CCCCCCCcCccCCCCCC-CHHHHHHHHHHHhhhcchhHhhhhHHHHhhhhhccCCC
Q 027238 70 DGTLAGDFGFDPLGLGE-DPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR 124 (226)
Q Consensus 70 ~G~~pGd~GfDPlGl~~-d~e~l~~~r~aElkhGRlAMlA~~G~~~~e~~~~~G~~ 124 (226)
|..+|||++|||+||.+ |+++++++|.+||||||+||+|++|+++|+++++.|++
T Consensus 190 d~~yPGg~~FDPlgl~~~d~~~~~~~k~kEikNGRLAM~A~~G~~~q~~vTG~gPl 245 (267)
T PLN00098 190 DVGYPGGLWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGFCFQAVYTGEGPI 245 (267)
T ss_pred CCCCCCCccCCcccCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhcCCChH
Confidence 34689999999999964 89999999999999999999999999999999987765
No 21
>PLN00099 light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional
Probab=99.43 E-value=9.4e-14 Score=123.51 Aligned_cols=54 Identities=28% Similarity=0.478 Sum_probs=48.2
Q ss_pred CCCCCCCcCccCCCCCCCHHHHHHHHHHHhhhcchhHhhhhHHHHhhh-hhccCCC
Q 027238 70 DGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDL-LRVTGIR 124 (226)
Q Consensus 70 ~G~~pGd~GfDPlGl~~d~e~l~~~r~aElkhGRlAMlA~~G~~~~e~-~~~~G~~ 124 (226)
++.+||| +|||+||.+|+++++++|.+||||||+||+|++|+++|+. +++.|++
T Consensus 163 ~~~yPGd-~FDPlGl~kd~~~~~~~k~kELkNGRLAMiA~lGf~vQ~~~~~G~gPl 217 (243)
T PLN00099 163 KKKYPGG-AFDPLGYSKDPKKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPL 217 (243)
T ss_pred CCcCCCC-cCCcccccCCHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhcCCCChH
Confidence 3469999 7999999999999999999999999999999999999995 5666654
No 22
>PLN00171 photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional
Probab=99.39 E-value=2.4e-13 Score=124.81 Aligned_cols=52 Identities=29% Similarity=0.418 Sum_probs=47.7
Q ss_pred CCCCcCccCCCCCCCHHHHHHHHHHHhhhcchhHhhhhHHHHhhhhhccCCC
Q 027238 73 LAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR 124 (226)
Q Consensus 73 ~pGd~GfDPlGl~~d~e~l~~~r~aElkhGRlAMlA~~G~~~~e~~~~~G~~ 124 (226)
+||+++|||+||++|+++++++|.+||||||+||+|++|+++|+++++.|++
T Consensus 252 YPGG~~FDPLGl~~d~~~~~~~k~kELkNGRLAM~A~lG~~vq~~vTG~GPl 303 (324)
T PLN00171 252 YPGGALFDPLGLSKDPVAFEDLKVKEIKNGRLAMVAWLGFYIQAAVTGKGPV 303 (324)
T ss_pred CCcccCCCccccCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhHhhcCCChH
Confidence 4666679999999999999999999999999999999999999999987765
No 23
>PLN00097 photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional
Probab=99.39 E-value=2.9e-13 Score=120.42 Aligned_cols=51 Identities=22% Similarity=0.270 Sum_probs=46.5
Q ss_pred CCCCcCccCCCCCCCHHHHHHHHHHHhhhcchhHhhhhHHHHhhhhhccCCC
Q 027238 73 LAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR 124 (226)
Q Consensus 73 ~pGd~GfDPlGl~~d~e~l~~~r~aElkhGRlAMlA~~G~~~~e~~~~~G~~ 124 (226)
+||.. ||||||++|+++++++|.+||||||+||+|++|+++|+++++.|++
T Consensus 177 YPgg~-FDPlgl~~d~~~~~~lk~kEiknGRLAM~A~~G~~~q~~vTGkGPl 227 (244)
T PLN00097 177 YPKGL-FDKFGWAKDEKKAAELKLKEIANGRLAMLAFLGCCAQAIQTGTGPV 227 (244)
T ss_pred CCCCC-CCccccCCCHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhccCCCHH
Confidence 44443 9999999999999999999999999999999999999999988765
No 24
>PF00504 Chloroa_b-bind: Chlorophyll A-B binding protein; InterPro: IPR022796 The light-harvesting complex (LHC) consists of chlorophylls A and B and the chlorophyll A-B binding protein. LHC functions as a light receptor that captures and delivers excitation energy to photosystems I and II with which it is closely associated. Under changing light conditions, the reversible phosphorylation of light harvesting chlorophyll a/b binding proteins (LHCII) represents a system for balancing the excitation energy between the two photosystems []. The N terminus of the chlorophyll A-B binding protein extends into the stroma where it is involved with adhesion of granal membranes and photo-regulated by reversible phosphorylation of its threonine residues []. Both these processes are believed to mediate the distribution of excitation energy between photosystems I and II. This family also includes the photosystem II protein PsbS, which plays a role in energy-dependent quenching that increases thermal dissipation of excess absorbed light energy in the photosystem [].; PDB: 2O01_2 2WSF_2 2WSC_2 3LW5_2 2WSE_2 1RWT_D 2BHW_C 1VCR_A.
Probab=99.37 E-value=3e-13 Score=111.44 Aligned_cols=50 Identities=44% Similarity=0.729 Sum_probs=46.5
Q ss_pred CCCCCCCCCcCccCCCCCCCHHHHHHHHHHHhhhcchhHhhhhHHHHhhh
Q 027238 68 YLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDL 117 (226)
Q Consensus 68 ~l~G~~pGd~GfDPlGl~~d~e~l~~~r~aElkhGRlAMlA~~G~~~~e~ 117 (226)
..++.+|||++|||+|+.+|++..+++|.+||+|||+||+|++|+++||.
T Consensus 107 ~~~~~~pG~~~~dplgl~~~~~~~~~~~~~El~NGRlAMla~~g~~~~e~ 156 (156)
T PF00504_consen 107 GKDGRYPGDLGFDPLGLAKDPEEKEFMQLAELKNGRLAMLAFAGFVAQEA 156 (156)
T ss_dssp SSSSSSSSSSSSSTSSTSSSCHSHHCHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred cccccCccccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 56788999999999999989999999999999999999999999999973
No 25
>PLN00170 photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional
Probab=99.29 E-value=1.8e-12 Score=115.95 Aligned_cols=52 Identities=35% Similarity=0.361 Sum_probs=46.2
Q ss_pred CCCCCcCccCCCCCC---------CHHHHHHHHHHHhhhcchhHhhhhHHHHhhhhhccCCC
Q 027238 72 TLAGDFGFDPLGLGE---------DPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR 124 (226)
Q Consensus 72 ~~pGd~GfDPlGl~~---------d~e~l~~~r~aElkhGRlAMlA~~G~~~~e~~~~~G~~ 124 (226)
.+||+..||||||++ |+++++++|.+||||||+||+|++||++|. .++.|++
T Consensus 190 ~yPGG~~FDPLGl~~~~~~~~~~~d~~~~~~lk~kEIKnGRLAMlA~lGf~~Qa-~~g~~p~ 250 (255)
T PLN00170 190 GYPGGKFFDPLGLAGTVKDGVYIPDFEKLERLKLAEIKHARLAMVAMLIFYFEA-GQGKTPL 250 (255)
T ss_pred ccCCCcccCccccccccccccccCCHHHHHHHHHHHHhhhHHHHHHHHhHheee-ccCCCch
Confidence 378887799999985 789999999999999999999999999999 5666654
No 26
>PLN00100 light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional
Probab=99.27 E-value=2.5e-12 Score=114.44 Aligned_cols=48 Identities=21% Similarity=0.242 Sum_probs=43.2
Q ss_pred CCCCCcCccCCCCCCCHHHHHHHHHHHhhhcchhHhhhhHHHHhhhhhccCCC
Q 027238 72 TLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR 124 (226)
Q Consensus 72 ~~pGd~GfDPlGl~~d~e~l~~~r~aElkhGRlAMlA~~G~~~~e~~~~~G~~ 124 (226)
..||||+|||+||++ +.+|.+||||||+||+|++|+++|+++++.|++
T Consensus 143 ~~pg~~~FDPLGl~~-----~~~K~KEIkNGRLAMlA~lG~~~Q~~vTG~gPl 190 (246)
T PLN00100 143 GVLSFFPFDPTGMDS-----PEMKVKEVKNGRLAMLAFLGMVSQYAVTGKSPL 190 (246)
T ss_pred CCCCCCCCCcccccH-----HHHHHHHHhhhhHHHHHHHHHhhhhhhcCCChH
Confidence 478999999999963 568899999999999999999999999988765
No 27
>PLN00101 Photosystem I light-harvesting complex type 4 protein; Provisional
Probab=99.23 E-value=5e-12 Score=112.91 Aligned_cols=48 Identities=23% Similarity=0.347 Sum_probs=42.0
Q ss_pred CCCCCcCccCCCCCCCHHHHHHHHHHHhhhcchhHhhhhHHHHhhhhhccCCC
Q 027238 72 TLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR 124 (226)
Q Consensus 72 ~~pGd~GfDPlGl~~d~e~l~~~r~aElkhGRlAMlA~~G~~~~e~~~~~G~~ 124 (226)
.+||+. ||||||++++ +++.+|||||||||+|++|+++|+++|+.|++
T Consensus 183 ~YPGG~-FDPLgl~~~~----~~k~kEIKNGRLAM~A~lGf~~Q~~vTG~gPi 230 (250)
T PLN00101 183 GYPGGI-FNPLNFAPTE----EAKEKELANGRLAMLAFLGFVVQHNVTGKGPF 230 (250)
T ss_pred cCCCCc-cCccCCCccH----HHHHHHHhhcchHHHHHhhHhheehccCCChH
Confidence 367765 9999998653 67899999999999999999999999988875
No 28
>PLN00120 fucoxanthin-chlorophyll a-c binding protein; Provisional
Probab=99.20 E-value=1.5e-11 Score=106.85 Aligned_cols=50 Identities=28% Similarity=0.394 Sum_probs=41.0
Q ss_pred CCCCCCcCcc--CCCCCC-CHHHHHHHHHHHhhhcchhHhhhhHHHHhhhhhc
Q 027238 71 GTLAGDFGFD--PLGLGE-DPESLRWYVQAELVHARFAMAGVAGILFTDLLRV 120 (226)
Q Consensus 71 G~~pGd~GfD--PlGl~~-d~e~l~~~r~aElkhGRlAMlA~~G~~~~e~~~~ 120 (226)
+++||||+++ ++||.. |+++.+++|.+||||||+||+|++|+++||++++
T Consensus 142 ~~~pGd~~~g~~d~gfdp~~~~~~~~~~~~EL~NGRLAMiai~G~~~qe~l~g 194 (202)
T PLN00120 142 GEFVGDFRNGYIDFGWDSFDEETKLKKRAIELNQGRAAQMGILALMVHEQLGV 194 (202)
T ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 5789965433 444432 7899999999999999999999999999999875
No 29
>PHA02337 putative high light inducible protein
Probab=97.65 E-value=4e-05 Score=49.43 Aligned_cols=29 Identities=21% Similarity=0.141 Sum_probs=26.2
Q ss_pred HHHhhhcchhHhhhhHHHHhhhhhccCCC
Q 027238 96 QAELVHARFAMAGVAGILFTDLLRVTGIR 124 (226)
Q Consensus 96 ~aElkhGRlAMlA~~G~~~~e~~~~~G~~ 124 (226)
.+|..|||+||++++..+..|++++.++.
T Consensus 4 ~aE~~NGRlAMiGfv~~~~~e~~tGq~ip 32 (35)
T PHA02337 4 EAEIFNGWLAMIGFVAAVGAYATTGQIIP 32 (35)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHhCCCCC
Confidence 68999999999999999999999887654
No 30
>PLN00014 light-harvesting-like protein 3; Provisional
Probab=96.26 E-value=0.0021 Score=57.35 Aligned_cols=30 Identities=33% Similarity=0.392 Sum_probs=27.8
Q ss_pred HHHHhhhcchhHhhhhHHHHhhhhhccCCC
Q 027238 95 VQAELVHARFAMAGVAGILFTDLLRVTGIR 124 (226)
Q Consensus 95 r~aElkhGRlAMlA~~G~~~~e~~~~~G~~ 124 (226)
.++|+.|||+||+|++..++.|++++.|++
T Consensus 160 ~~aE~lNGR~AMiGFvaal~~E~~TG~gll 189 (250)
T PLN00014 160 PEAELLNGRAAMVGFFMAYLVDSLTGVGLV 189 (250)
T ss_pred chhHhhhhHHHHHHHHHHHHHHHHcCCcHH
Confidence 579999999999999999999999988875
No 31
>PHA02337 putative high light inducible protein
Probab=95.91 E-value=0.002 Score=41.56 Aligned_cols=14 Identities=29% Similarity=0.354 Sum_probs=12.2
Q ss_pred HHHHhhhhhhhccC
Q 027238 213 LKEIKNGLICLVLC 226 (226)
Q Consensus 213 ~kEIkNGRLAMiAi 226 (226)
..|+=|||||||++
T Consensus 4 ~aE~~NGRlAMiGf 17 (35)
T PHA02337 4 EAEIFNGWLAMIGF 17 (35)
T ss_pred HHHHHhhHHHHHHH
Confidence 47999999999975
No 32
>PLN00084 photosystem II subunit S (PsbS); Provisional
Probab=95.33 E-value=0.0098 Score=51.20 Aligned_cols=36 Identities=28% Similarity=0.246 Sum_probs=32.1
Q ss_pred HHHHHHHHHHhhhcchhHhhhhHHHHhhhhh-ccCCC
Q 027238 89 ESLRWYVQAELVHARFAMAGVAGILFTDLLR-VTGIR 124 (226)
Q Consensus 89 e~l~~~r~aElkhGRlAMlA~~G~~~~e~~~-~~G~~ 124 (226)
.+.+..+.-|+.|||+||++++--++.|+++ +.|++
T Consensus 130 ~~vrEqK~nE~~NGRLAMLGF~~alitE~lTgGqGiL 166 (214)
T PLN00084 130 DQVREQKPYELFNGRLAMLGFAFAIAGDAVTGGMGPL 166 (214)
T ss_pred HHHHhccchhhhhhHHHHHHHHHHHHHHHHhCCcchH
Confidence 3567777899999999999999999999999 88876
No 33
>PLN00084 photosystem II subunit S (PsbS); Provisional
Probab=92.39 E-value=0.036 Score=47.75 Aligned_cols=21 Identities=29% Similarity=0.301 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHhhhhhhhccC
Q 027238 206 RNAREWKLKEIKNGLICLVLC 226 (226)
Q Consensus 206 e~~~~~k~kEIkNGRLAMiAi 226 (226)
...++.|-.|+-||||||++|
T Consensus 130 ~~vrEqK~nE~~NGRLAMLGF 150 (214)
T PLN00084 130 DQVREQKPYELFNGRLAMLGF 150 (214)
T ss_pred HHHHhccchhhhhhHHHHHHH
Confidence 455777889999999999975
No 34
>PLN00014 light-harvesting-like protein 3; Provisional
Probab=86.82 E-value=0.19 Score=45.14 Aligned_cols=15 Identities=27% Similarity=0.211 Sum_probs=13.0
Q ss_pred HHHHHhhhhhhhccC
Q 027238 212 KLKEIKNGLICLVLC 226 (226)
Q Consensus 212 k~kEIkNGRLAMiAi 226 (226)
...|+-|||+|||+|
T Consensus 160 ~~aE~lNGR~AMiGF 174 (250)
T PLN00014 160 PEAELLNGRAAMVGF 174 (250)
T ss_pred chhHhhhhHHHHHHH
Confidence 458999999999985
No 35
>COG3924 Predicted membrane protein [Function unknown]
Probab=30.88 E-value=47 Score=25.04 Aligned_cols=34 Identities=32% Similarity=0.599 Sum_probs=25.2
Q ss_pred hhhcchhH----hhhhHHHHhhhhhc--cCCCCChhhhhc
Q 027238 99 LVHARFAM----AGVAGILFTDLLRV--TGIRELPVWYEA 132 (226)
Q Consensus 99 lkhGRlAM----lA~~G~~~~e~~~~--~G~~~~p~w~~a 132 (226)
=|..|||. +=++|+++...+.+ +|+...|.||+.
T Consensus 9 ~KEA~WAlgLtllYl~gW~v~AYlp~~t~G~~gfP~WFE~ 48 (80)
T COG3924 9 HKEARWALGLTLLYLAGWLVAAYLPGNTPGFTGFPLWFEM 48 (80)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCChHHHHH
Confidence 36678774 55678888887544 688888999984
No 36
>PHA00649 hypothetical protein
Probab=29.54 E-value=69 Score=24.03 Aligned_cols=36 Identities=22% Similarity=0.443 Sum_probs=25.0
Q ss_pred CCCCC-CCHHHHHHHHHHHhhhcc-------hhHhhhhHHHHhhh
Q 027238 81 PLGLG-EDPESLRWYVQAELVHAR-------FAMAGVAGILFTDL 117 (226)
Q Consensus 81 PlGl~-~d~e~l~~~r~aElkhGR-------lAMlA~~G~~~~e~ 117 (226)
-||.. .+|++.+.+| +.+.|+| -.||+++|..+..+
T Consensus 25 ~LGVD~~~P~~VEEFr-~D~~~~Rr~RKA~D~G~L~~VGL~~~~i 68 (83)
T PHA00649 25 ILGVDVDVPEQVEEFR-EDLRFGRRMRKAADHGFLALVGLVAVAL 68 (83)
T ss_pred HHcCCCCCHHHHHHHH-HHHHHHHHHHHHhhcchHHHHHHHHHHH
Confidence 34443 4788888776 5778887 35788888777665
No 37
>KOG0593 consensus Predicted protein kinase KKIAMRE [General function prediction only]
Probab=23.89 E-value=43 Score=32.05 Aligned_cols=33 Identities=30% Similarity=0.530 Sum_probs=27.2
Q ss_pred CHHHHHHHHHHHhhhcc------hhHhhhhHHHHhhhhhc
Q 027238 87 DPESLRWYVQAELVHAR------FAMAGVAGILFTDLLRV 120 (226)
Q Consensus 87 d~e~l~~~r~aElkhGR------lAMlA~~G~~~~e~~~~ 120 (226)
|...-+|||.-||-=|. +.|.| +||++.|++++
T Consensus 160 DYVATRWYRaPELLvGDtqYG~pVDiWA-iGCv~aEl~~G 198 (396)
T KOG0593|consen 160 DYVATRWYRAPELLVGDTQYGKPVDIWA-IGCVFAELLTG 198 (396)
T ss_pred hhhhhhhccChhhhcccCcCCCcccchh-hhHHHHHHhcC
Confidence 56677999999999985 56665 69999999886
No 38
>PF00770 Peptidase_C5: Adenovirus endoprotease; InterPro: IPR000855 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine aminopeptidases belong to the peptidase family C5 (adenain family, clan CE). Several adenovirus proteins are synthesised as precursors, requiring processing by a protease before the virion is assembled [, ]. Until recently, the adenovirus endopeptidase was classified as a serine protease, having been reported to be inhibited by serine protease inhibitors [, ]. However, it has since been shown to be inhibited by cysteine protease inhibitors, and the catalytic residues are believed to be His-54 and Cys-104 [, ].; GO: 0004197 cysteine-type endopeptidase activity, 0006508 proteolysis; PDB: 1NLN_A 1AVP_A.
Probab=23.78 E-value=41 Score=29.24 Aligned_cols=9 Identities=22% Similarity=0.992 Sum_probs=3.9
Q ss_pred CCCCCCCcc
Q 027238 195 LLNPLGLAK 203 (226)
Q Consensus 195 gFDPLgl~~ 203 (226)
.|||+||++
T Consensus 50 mFDPfGfsd 58 (183)
T PF00770_consen 50 MFDPFGFSD 58 (183)
T ss_dssp EE-TT---H
T ss_pred EeCCCCCCH
Confidence 699999973
Done!