Query 027238
Match_columns 226
No_of_seqs 218 out of 1043
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 11:13:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027238.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027238hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2wsc_2 LHCA2, type II chloroph 100.0 5.7E-53 1.9E-57 376.5 0.6 173 51-226 59-232 (269)
2 2bhw_A Chlorophyll A-B binding 100.0 2.9E-47 9.7E-52 333.8 14.8 160 50-226 15-191 (232)
3 2wsc_4 Chlorophyll A-B binding 100.0 7.1E-50 2.4E-54 353.7 -3.9 167 51-226 47-214 (251)
4 2wsc_3 LHCA3, type II chloroph 100.0 5.1E-49 1.8E-53 352.1 -1.3 170 54-226 54-239 (276)
5 3pl9_A Chlorophyll A-B binding 100.0 9.8E-48 3.4E-52 338.0 6.6 148 53-226 8-208 (243)
6 2wsc_1 AT3G54890, LHCA1; photo 100.0 3.8E-44 1.3E-48 315.4 0.2 153 54-226 43-202 (241)
7 3pl9_A Chlorophyll A-B binding 99.5 1.5E-14 5E-19 127.3 3.6 52 72-124 172-223 (243)
8 2bhw_A Chlorophyll A-B binding 99.4 5.8E-14 2E-18 122.8 5.5 55 69-124 152-206 (232)
9 2wsc_3 LHCA3, type II chloroph 99.4 1.6E-14 5.4E-19 129.3 1.0 56 70-125 200-255 (276)
10 2wsc_2 LHCA2, type II chloroph 99.4 2.8E-14 9.7E-19 127.2 -1.4 56 70-125 192-248 (269)
11 2wsc_1 AT3G54890, LHCA1; photo 99.3 3E-13 1E-17 119.0 -0.9 54 70-124 164-218 (241)
12 2wsc_4 Chlorophyll A-B binding 99.0 2.9E-11 1E-15 106.8 0.6 47 72-124 183-229 (251)
13 2dpr_A CON-T(K7GLA); conantoxi 20.7 61 0.0021 18.4 2.0 15 88-102 6-20 (26)
No 1
>2wsc_2 LHCA2, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_2* 2wsf_2* 2o01_2* 3lw5_2*
Probab=100.00 E-value=5.7e-53 Score=376.55 Aligned_cols=173 Identities=50% Similarity=0.983 Sum_probs=119.0
Q ss_pred hccCCCCcCCCCCCCCCCCCCCCCCCcCccCCCCCCCHHHHHHHHHHHhhhcchhHhhhhHHHHhhhhhccCCCCChhhh
Q 027238 51 VRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWY 130 (226)
Q Consensus 51 ~~~~~r~~~lP~~~~p~~l~G~~pGd~GfDPlGl~~d~e~l~~~r~aElkhGRlAMlA~~G~~~~e~~~~~G~~~~p~w~ 130 (226)
++.++|++|+|+.++|+||||++||||||||+||++|+|+++|||++|||||||||||++|++++|+++..|+.+.|.||
T Consensus 59 ~~~~~r~~wlpg~~~P~~L~G~~pGD~GfDPlGL~~d~e~~~~~r~aElkHGR~AMLA~~G~l~~E~l~~~G~~~~p~w~ 138 (269)
T 2wsc_2 59 VAEPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGLGSDPESLRWNVQAELVHSRWAMLGAAGIFIPEFLTKLGILNTPSWY 138 (269)
T ss_dssp -----------------------------------CCCSCCTTTHHHHHHTHHHHTTTTHHHHHHHHHCCTTSSSCCCCC
T ss_pred ccCCCcccccCCCCCcccccCcCCCCCCCCccccCCCHHHHHHHHHHHHhcchHHHHHHHHhHhHHhhccCCcccCcccc
Confidence 45689999999999999999999999999999999999999999999999999999999999999999988888778899
Q ss_pred hcccchhcccchhhHHHHHHHHHhHhhhhhhccccCCCCCCCCCcchhhhhhhcCCCCCCCCCCCCCCCCCcc-CHHHHH
Q 027238 131 EAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAK-DIRNAR 209 (226)
Q Consensus 131 ~aG~~~~~~~~~~~l~~~qll~iG~~E~~r~~~~~~pg~~~~~g~f~g~~~~~~g~~~~yPGd~gFDPLgl~~-d~e~~~ 209 (226)
++|...+ |.+.++++++|+++||++|.+|++++.+||++..++.|.+ ......+.+||||++||||||.+ |+|+++
T Consensus 139 ~aG~~~~-~~~~~~l~~~qi~liG~~E~~r~~~~~~pG~~g~~p~f~~--~~~~~~d~~~PG~~~fDPlgl~~~~~e~~~ 215 (269)
T 2wsc_2 139 TAGEQEY-FTDTTTLFIVELVFIGWAEGRRWADILNPGCVNTDPIFPN--NKLTGTDVGYPGGLWFDPLGWGSASPQKLK 215 (269)
T ss_dssp STTSSSS-CCCTTSHHHHHTTHHHHHHHHHHTTSSCCCCCSSSCCSSS--CCSSTTSCSCTTCSSCCCSSSSSSCCCSCT
T ss_pred ccchhhh-hcchHHHHHHHHHHHHHHHHHHHhccccCCcccccccccc--ccccccccCCCCCcccCccccCcccHHHHH
Confidence 9876554 6667788899999999999999999999988766555422 11223466899999999999986 788889
Q ss_pred HHHHHHHhhhhhhhccC
Q 027238 210 EWKLKEIKNGLICLVLC 226 (226)
Q Consensus 210 ~~k~kEIkNGRLAMiAi 226 (226)
++|++||||||||||||
T Consensus 216 ~~~~~Ei~nGRlAMla~ 232 (269)
T 2wsc_2 216 ELRTKEIKNGRLAMLAV 232 (269)
T ss_dssp TSTTTTHHHHHHHHTTT
T ss_pred HHHHhhcccchHHHHHH
Confidence 99999999999999986
No 2
>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis, light-harvesting, membrane protein, chloroplast, chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD; 2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A*
Probab=100.00 E-value=2.9e-47 Score=333.78 Aligned_cols=160 Identities=36% Similarity=0.643 Sum_probs=133.4
Q ss_pred hhccCCCCcCCCC--CCCCCCCCCCCCCCcCccCCCCCCCHHHHHHHHHHHhhhcchhHhhhhHHHHhhhhhccCCC-CC
Q 027238 50 VVRAQQRPTWLPG--VDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR-EL 126 (226)
Q Consensus 50 ~~~~~~r~~~lP~--~~~p~~l~G~~pGd~GfDPlGl~~d~e~l~~~r~aElkhGRlAMlA~~G~~~~e~~~~~G~~-~~ 126 (226)
.+..++|++|+|. .+.|+||||++|||||||||||++|+++++|||++|||||||||||++|++++|+++..|+. ..
T Consensus 15 ~~~~~~r~~~l~~~~~~~P~~LdG~~pGD~GFDPLGLs~d~e~~~r~ReaELkHGR~AMLA~~G~lv~E~l~~~G~~~~~ 94 (232)
T 2bhw_A 15 PWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGSVFPELLSRNGVKFGE 94 (232)
T ss_dssp TTSSTTCCCTTGGGCCSCCTTCCSCSTTCCSCCTTCTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCSC
T ss_pred cccCCCcccccCccccCCccccCCcCCCCCCCCCCcCCCCHHHHHHHHHHHHhccchHHHhhhhhhhHHHhccCCcCCcc
Confidence 3677899999975 38999999999999999999999999999999999999999999999999999998876653 34
Q ss_pred hhhhhcccchhc--------------ccchhhHHHHHHHHHhHhhhhhhccccCCCCCCCCCcchhhhhhhcCCCCCCCC
Q 027238 127 PVWYEAGAVEFK--------------FASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPG 192 (226)
Q Consensus 127 p~w~~aG~~~~~--------------~~~~~~l~~~qll~iG~~E~~r~~~~~~pg~~~~~g~f~g~~~~~~g~~~~yPG 192 (226)
+.|+++|...+. ++.+..++++|+++||++|.+|+.+- +. .+..++.|||
T Consensus 95 ~~w~~ag~~~~~~~~~~~~~~P~~~~~q~i~~~~~~q~~~~g~~E~~r~~~g--~~--------------g~~~d~~~Pg 158 (232)
T 2bhw_A 95 AVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGG--PL--------------GEVVDPLYPG 158 (232)
T ss_dssp CSGGGSGGGGGSTTCEEGGGCTTSEEECCHHHHHHHHHHHHHHHHHHHHHEE--TT--------------EECSSSSCCC
T ss_pred cccccccchhccccchhcccCcchhhHHHHHHHHHHHHHHHHHHHHHhhccC--cc--------------cccccccCCC
Confidence 568887653221 12345677889999999999998651 11 0123556999
Q ss_pred CCCCCCCCCccCHHHHHHHHHHHHhhhhhhhccC
Q 027238 193 GPLLNPLGLAKDIRNAREWKLKEIKNGLICLVLC 226 (226)
Q Consensus 193 d~gFDPLgl~~d~e~~~~~k~kEIkNGRLAMiAi 226 (226)
|+ ||||||.+|+++++++|++||||||||||||
T Consensus 159 ~~-fdPlgl~~~~~~~~~~~~~E~~nGRlAM~~~ 191 (232)
T 2bhw_A 159 GS-FDPLGLADDPEAFAELKVKELKNGRLAMFSM 191 (232)
T ss_dssp TT-SCTTCTTCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cc-cccchhccchHHHHHHHHhhhhccchHHHHH
Confidence 98 9999999999999999999999999999985
No 3
>2wsc_4 Chlorophyll A-B binding protein P4, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_4* 2wsf_4* 3lw5_4* 2o01_4*
Probab=100.00 E-value=7.1e-50 Score=353.75 Aligned_cols=167 Identities=47% Similarity=0.895 Sum_probs=113.3
Q ss_pred hccC-CCCcCCCCCCCCCCCCCCCCCCcCccCCCCCCCHHHHHHHHHHHhhhcchhHhhhhHHHHhhhhhccCCCCChhh
Q 027238 51 VRAQ-QRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVW 129 (226)
Q Consensus 51 ~~~~-~r~~~lP~~~~p~~l~G~~pGd~GfDPlGl~~d~e~l~~~r~aElkhGRlAMlA~~G~~~~e~~~~~G~~~~p~w 129 (226)
++.+ +|++|+|+.+.|.||||++|||||||||||++|+|+++|+|++|||||||||||++|++++|++++.|++..|.|
T Consensus 47 ~~~~~~r~~~~pg~~~p~~l~g~~pGd~gfDPlGl~~d~e~~~~~r~aEl~hGR~AMla~~G~~~~e~~~~~g~~~~p~w 126 (251)
T 2wsc_4 47 FKVEAKKGEWLPGLASPGYLTGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGIINVPKW 126 (251)
T ss_dssp ----------------------------------CCCSCCCTTTTHHHHHHHTHHHHHHHTTSSTTSSSCCSCSSCCCCC
T ss_pred ccCcchhhhccCCCCCccccCCCcCCCCCCCccccCCChHHHHHHHHHHHhccchHHHHHHHHHHHHHhcCCCccCCccc
Confidence 4445 699999999999999999999999999999999999999999999999999999999999999999998877889
Q ss_pred hhcccchhcccchhhHHHHHHHHHhHhhhhhhccccCCCCCCCCCcchhhhhhhcCCCCCCCCCCCCCCCCCccCHHHHH
Q 027238 130 YEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAR 209 (226)
Q Consensus 130 ~~aG~~~~~~~~~~~l~~~qll~iG~~E~~r~~~~~~pg~~~~~g~f~g~~~~~~g~~~~yPGd~gFDPLgl~~d~e~~~ 209 (226)
|++|...| +.+.++++++|+++||++|.+|+.++.+||++..++.|.+ ...+..+.+||||+ ||||||.+ ++
T Consensus 127 ~~aG~~~~-~~~~~~l~~~qi~liG~~E~~r~~~~~~pG~~g~~p~f~~--~~~~~~d~~yPGg~-FDPLgl~~----~~ 198 (251)
T 2wsc_4 127 YAAGKEEY-FASSSTLFVIEFILSHYVEIRRWQDIKNPGSVNQDPIFKQ--YSLPAGEVGYPGGI-FNPLNFAP----TL 198 (251)
T ss_dssp SCCCSSSC-SSCSSCTTTTHHHHHHTTTHHHHHHHSSCCCTTCCSSSCS--SSSCCHHHHSSCCT-TCCCCCCS----SS
T ss_pred cccchHhh-hccchHHHHHHHHHHHHHHHHHhhcccCCCcccccccccc--cccccccccCCCCc-cCccchhH----HH
Confidence 99886654 6667788889999999999999999888887665554421 11122245799998 99999976 57
Q ss_pred HHHHHHHhhhhhhhccC
Q 027238 210 EWKLKEIKNGLICLVLC 226 (226)
Q Consensus 210 ~~k~kEIkNGRLAMiAi 226 (226)
++|+|||||||| ||||
T Consensus 199 ~~k~kELkNGRL-MlAi 214 (251)
T 2wsc_4 199 EAKEKEIANGRL-MLAF 214 (251)
T ss_dssp SCTTHHHHHHHT-TTTH
T ss_pred HHHHHHHhcchh-HHHH
Confidence 899999999999 9986
No 4
>2wsc_3 LHCA3, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Glycine max} PDB: 2wse_3* 2wsf_3* 3lw5_3* 2o01_3*
Probab=100.00 E-value=5.1e-49 Score=352.14 Aligned_cols=170 Identities=42% Similarity=0.881 Sum_probs=107.4
Q ss_pred CCCCcCCCCCCCCCCCCCCCCCCcCccCCCCCCCHHHH------HHHHHHHhhhcchhHhhhhHHHHhhhhhccCCC--C
Q 027238 54 QQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESL------RWYVQAELVHARFAMAGVAGILFTDLLRVTGIR--E 125 (226)
Q Consensus 54 ~~r~~~lP~~~~p~~l~G~~pGd~GfDPlGl~~d~e~l------~~~r~aElkhGRlAMlA~~G~~~~e~~~~~G~~--~ 125 (226)
++|++|+|+.++|+||||++||||||||||| .|++++ +|+|++||+||||||||++|++++|++++.|++ +
T Consensus 54 ~~R~~wlP~~~~P~~L~G~~pGD~GfDPlGl-~d~~~~~~~~~~~~~r~aEl~hGR~AMLa~~G~l~~E~~~~~g~~~~~ 132 (276)
T 2wsc_3 54 SDRPLWFASKQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEIINGRYAMLGAVGAIAPEILGKAGLIPQE 132 (276)
T ss_dssp --------------------------------CCCCCCCCSSSTTHHHHHHHHHHTTSCCTTTSTTSCSSCSSCCCCCCS
T ss_pred CCccccCCCCCCcccccCcCCCccCCCcccc-CChHhhcchhhHHHHHHHHhhcccchhhhHHHHHHHHHhccccccccc
Confidence 3899999999999999999999999999999 688889 999999999999999999999999999988876 3
Q ss_pred Chh-hhhcccc------hhcccchhhHHHHHHHHHhHhhhhhhccccCCCCCCCCCcchhhhh-hhcCCCCCCCCCCCCC
Q 027238 126 LPV-WYEAGAV------EFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEA-ALEGLEPGYPGGPLLN 197 (226)
Q Consensus 126 ~p~-w~~aG~~------~~~~~~~~~l~~~qll~iG~~E~~r~~~~~~pg~~~~~g~f~g~~~-~~~g~~~~yPGd~gFD 197 (226)
.|. |++.|.. .| +.+..+++|+|+++||++|.+|++++.+||+...++.| |++. ..+..++.||||++||
T Consensus 133 ~p~~w~~~g~ip~aG~~~~-~~~~~~l~~~qi~liG~~E~~r~~~~~~pG~~g~~p~~-g~~~~~~~~~d~~yPG~~~fD 210 (276)
T 2wsc_3 133 TALPWFRTGFIPPAGTYNY-WADSYTLFVFEMALMGFAEHRRFQDWAKPGSMGKQYFL-GLEKGLGGSGEPAYPGGPFFN 210 (276)
T ss_dssp SCCSSSSCCCC-----CCC-SCCCCSTTHHHHHHTHHHHTTTTTGGGSCCCCCCCCSS-CSCCCCCCCSSCTTTSSSSCC
T ss_pred CcchhhhhhcccchhHHHH-hccchHHHHHHHHHHHHHHHhhhcccccCCcccccccc-cccccccccccccCCCccccc
Confidence 454 8874332 22 45566788999999999999999999888876543332 2221 1223466899999999
Q ss_pred CCCCccCHHHHHHHHHHHHhhhhhhhccC
Q 027238 198 PLGLAKDIRNAREWKLKEIKNGLICLVLC 226 (226)
Q Consensus 198 PLgl~~d~e~~~~~k~kEIkNGRLAMiAi 226 (226)
||||.+|+++++++|++||||||||||||
T Consensus 211 Plgl~~~~~~~~~~r~~Ei~nGRlAMla~ 239 (276)
T 2wsc_3 211 PLGFGKDEKSLKDLKLKEVKNGRLAMLAI 239 (276)
T ss_dssp CCCCSSSCC-----CCSHHHHHHHHHHHH
T ss_pred chhcccccHHHHHHHHhhhcccchHHHHH
Confidence 99999988889999999999999999985
No 5
>3pl9_A Chlorophyll A-B binding protein; CP29, light-harvesting COMP membrane protein, plant, photosynthesis, chloroplast, thyla photosystem II; HET: CLA CHL LUT XAT NEX G3P HTG; 2.80A {Spinacia oleracea}
Probab=100.00 E-value=9.8e-48 Score=338.00 Aligned_cols=148 Identities=39% Similarity=0.721 Sum_probs=90.6
Q ss_pred cCCCCcCCCCCCCCCCCCCCCCCCcCccCCCCCCCHHH------------------------------------------
Q 027238 53 AQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPES------------------------------------------ 90 (226)
Q Consensus 53 ~~~r~~~lP~~~~p~~l~G~~pGd~GfDPlGl~~d~e~------------------------------------------ 90 (226)
.++|++|+|+.++|+||||++|||||||||||+++||.
T Consensus 8 ~~~r~~w~pg~~~P~~LdGslpGD~GfDPlgL~~~pe~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 87 (243)
T 3pl9_A 8 STDRPLWYPGAKAPEYLDGSLVGDYGFDPFGLGKPAEYLQYDYDGLDQNLAKNLAGDIIGTRTESADVKSTSLQPYSEVF 87 (243)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CcccccccCCCCCcccccCCCCCcCCCCccccCCChhhhccccccchhhhhccccccccccccccccccccccccccchh
Confidence 46899999999999999999999999999999999873
Q ss_pred -HHHHHHHHhhhcchhHhhhhHHHHhhhhhccCCCCChhhhhcccch------hc----ccchhhHHHHHHHHHhHhhhh
Q 027238 91 -LRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVE------FK----FASTRTLFIVQLLLMGFAETK 159 (226)
Q Consensus 91 -l~~~r~aElkhGRlAMlA~~G~~~~e~~~~~G~~~~p~w~~aG~~~------~~----~~~~~~l~~~qll~iG~~E~~ 159 (226)
++|||++|||||||||||++||+++|++++. .|+++|... |. ..++++++++|+++||++|.+
T Consensus 88 ~l~r~ReaELkHGRwAMLAvlG~lvpE~l~g~------~W~~aG~~~~~~g~~y~g~p~~~~i~~l~~~qv~lmG~~E~~ 161 (243)
T 3pl9_A 88 GLQRFRECELIHGRWAMLATLGALTVEGLTGI------TWQDAGKVELIEGSSYLGQPLPFSMTTLIWIEVLVIGYIEFQ 161 (243)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC------CTTTHHHHHHHSCEEETTEEECCCHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHhhhhcchhHHHHHHHHHhHHhhcCc------ccccccccccccccccccCccchhhHHHHHHHHHHHHHHHHH
Confidence 7899999999999999999999999998632 377655422 10 124668899999999999999
Q ss_pred hhccccCCCCCCCCCcchhhhhhhcCCCCCCCCCCCCCCCCCccCHHHHHHHHHHHHhhhhhhhccC
Q 027238 160 RYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGLICLVLC 226 (226)
Q Consensus 160 r~~~~~~pg~~~~~g~f~g~~~~~~g~~~~yPGd~gFDPLgl~~d~e~~~~~k~kEIkNGRLAMiAi 226 (226)
|+.+.. ..+..||||+ ||||||.+|+++++++|++||||||||||||
T Consensus 162 R~~~~~-------------------~~~~~~PG~~-FDPLGl~~d~e~~~~~r~~ElknGRlAMla~ 208 (243)
T 3pl9_A 162 RNAELD-------------------TEKRLYPGGT-FDPLGLASDPEKKPILQLAEIKHARLAMVGF 208 (243)
T ss_dssp HHSCCC-------------------TTTTTCCCGG-GCTTCTTCSTTTHHHHHHHHHHHHHHHHHHH
T ss_pred hhcccC-------------------CccccCCCcc-hhhccccccHHHHHHHHHHHHhhccHHHHHH
Confidence 987531 1133589999 9999999999999999999999999999985
No 6
>2wsc_1 AT3G54890, LHCA1; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_1* 2wsf_1* 2o01_1* 3lw5_1*
Probab=100.00 E-value=3.8e-44 Score=315.42 Aligned_cols=153 Identities=39% Similarity=0.764 Sum_probs=106.3
Q ss_pred CCCCcCCCCCCCCCCCCCCCCCCcCccCCCCCCCHHHHHHHHHHHhhhcchhHhhhhHHHHhhhhhccCCCCChhhh--h
Q 027238 54 QQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWY--E 131 (226)
Q Consensus 54 ~~r~~~lP~~~~p~~l~G~~pGd~GfDPlGl~~d~e~l~~~r~aElkhGRlAMlA~~G~~~~e~~~~~G~~~~p~w~--~ 131 (226)
..|+.|+|+.+.|+||||++||||||||+||++|+++++|||++|||||||||||++|+++||+++..++.+.+.|. .
T Consensus 43 sm~~~w~P~~~~P~~L~G~~pgd~gfDPlgl~~~~~~~~~~r~~El~hgR~AMla~~G~~~~e~~~~~~~~~a~~~~~~~ 122 (241)
T 2wsc_1 43 RMAAHWMPGEPRPAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALGYGNWVKAQEWAALP 122 (241)
T ss_dssp ------------------CTTSSCCCSSTTTTTTTTHHHHSHHHHHHHHHHHTTTSTTSSSTTCCCCC-----CCCCSCS
T ss_pred ccccccCCCCCCcccccCCCCCcCCcCccccCCCHHHHHHHHHHHHhhchhHHhhhhcccchhhccCCccccccchhccC
Confidence 45788999999999999999999999999999999999999999999999999999999999998753322211221 1
Q ss_pred cccchh-----cccchhhHHHHHHHHHhHhhhhhhccccCCCCCCCCCcchhhhhhhcCCCCCCCCCCCCCCCCCccCHH
Q 027238 132 AGAVEF-----KFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIR 206 (226)
Q Consensus 132 aG~~~~-----~~~~~~~l~~~qll~iG~~E~~r~~~~~~pg~~~~~g~f~g~~~~~~g~~~~yPGd~gFDPLgl~~d~e 206 (226)
.|...| .+..++.++++|+++||++|.+|+.+. + ..++.||||. ||||||.+|++
T Consensus 123 ~g~a~~~~~~~~~~~~~~i~~iq~l~ig~~E~~r~~~~-~------------------~~~~~yPgg~-fDPlgl~~~~~ 182 (241)
T 2wsc_1 123 GGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRSMEK-D------------------PEKKKYPGGA-FDPLGYSKDPK 182 (241)
T ss_dssp SCSSCCSSSCSSSSSHHHHHHHHHHHTHHHHHHHTSCC-S------------------SCCSSSCSCC-SCSSSCSCSSS
T ss_pred CcchhhhcCcchHHHHHHHHHHHHHHHHHHHHHHHhcc-C------------------CCCCCCCCCc-ccccccccchh
Confidence 122222 134567888999999999999987431 0 1134699995 99999999999
Q ss_pred HHHHHHHHHHhhhhhhhccC
Q 027238 207 NAREWKLKEIKNGLICLVLC 226 (226)
Q Consensus 207 ~~~~~k~kEIkNGRLAMiAi 226 (226)
+++++|.+|||||||||||+
T Consensus 183 ~~~~~r~~E~~nGRlAM~a~ 202 (241)
T 2wsc_1 183 KLEELKVKEIKNGRLALLAF 202 (241)
T ss_dssp SCCCSCTTHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccccHHHHHH
Confidence 99999999999999999975
No 7
>3pl9_A Chlorophyll A-B binding protein; CP29, light-harvesting COMP membrane protein, plant, photosynthesis, chloroplast, thyla photosystem II; HET: CLA CHL LUT XAT NEX G3P HTG; 2.80A {Spinacia oleracea}
Probab=99.47 E-value=1.5e-14 Score=127.29 Aligned_cols=52 Identities=38% Similarity=0.551 Sum_probs=49.5
Q ss_pred CCCCCcCccCCCCCCCHHHHHHHHHHHhhhcchhHhhhhHHHHhhhhhccCCC
Q 027238 72 TLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR 124 (226)
Q Consensus 72 ~~pGd~GfDPlGl~~d~e~l~~~r~aElkhGRlAMlA~~G~~~~e~~~~~G~~ 124 (226)
.+|||+ ||||||++|+++++++|.+||||||+||+|++|+++|+++++.|++
T Consensus 172 ~~PG~~-FDPLGl~~d~e~~~~~r~~ElknGRlAMla~~g~~~q~~vtG~Gpl 223 (243)
T 3pl9_A 172 LYPGGT-FDPLGLASDPEKKPILQLAEIKHARLAMVGFLGFAVQAAVTGKGPL 223 (243)
T ss_dssp TCCCGG-GCTTCTTCSTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCHH
T ss_pred cCCCcc-hhhccccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhcCCChH
Confidence 589999 9999999999999999999999999999999999999999988865
No 8
>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis, light-harvesting, membrane protein, chloroplast, chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD; 2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A*
Probab=99.44 E-value=5.8e-14 Score=122.82 Aligned_cols=55 Identities=33% Similarity=0.523 Sum_probs=51.0
Q ss_pred CCCCCCCCcCccCCCCCCCHHHHHHHHHHHhhhcchhHhhhhHHHHhhhhhccCCC
Q 027238 69 LDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR 124 (226)
Q Consensus 69 l~G~~pGd~GfDPlGl~~d~e~l~~~r~aElkhGRlAMlA~~G~~~~e~~~~~G~~ 124 (226)
.|..+|||+ |||+||.+|+++++++|.+||||||+||+|++|+++|+++++.|++
T Consensus 152 ~d~~~Pg~~-fdPlgl~~~~~~~~~~~~~E~~nGRlAM~~~~g~~~~~~~tg~g~~ 206 (232)
T 2bhw_A 152 VDPLYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPL 206 (232)
T ss_dssp SSSSCCCTT-SCTTCTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCSH
T ss_pred ccccCCCcc-cccchhccchHHHHHHHHhhhhccchHHHHHHHHHHHHHhcCCChH
Confidence 355689998 9999999999999999999999999999999999999999988765
No 9
>2wsc_3 LHCA3, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Glycine max} PDB: 2wse_3* 2wsf_3* 3lw5_3* 2o01_3*
Probab=99.43 E-value=1.6e-14 Score=129.28 Aligned_cols=56 Identities=29% Similarity=0.455 Sum_probs=46.9
Q ss_pred CCCCCCCcCccCCCCCCCHHHHHHHHHHHhhhcchhHhhhhHHHHhhhhhccCCCC
Q 027238 70 DGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRE 125 (226)
Q Consensus 70 ~G~~pGd~GfDPlGl~~d~e~l~~~r~aElkhGRlAMlA~~G~~~~e~~~~~G~~~ 125 (226)
|..+|||++|||+||++|+++++++|++||||||+||||++|+++|+++++.|++.
T Consensus 200 d~~yPG~~~fDPlgl~~~~~~~~~~r~~Ei~nGRlAMla~~g~~~~~~~tg~g~~~ 255 (276)
T 2wsc_3 200 EPAYPGGPFFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGYFVQALVTGVGPYQ 255 (276)
T ss_dssp SCTTTSSSSCCCCCCSSSCC-----CCSHHHHHHHHHHHHHHHHSSCCCCSSCCSC
T ss_pred cccCCCcccccchhcccccHHHHHHHHhhhcccchHHHHHHHHHHHHHhcCCChHH
Confidence 45689999999999998888899999999999999999999999999999888763
No 10
>2wsc_2 LHCA2, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_2* 2wsf_2* 2o01_2* 3lw5_2*
Probab=99.37 E-value=2.8e-14 Score=127.20 Aligned_cols=56 Identities=34% Similarity=0.546 Sum_probs=51.1
Q ss_pred CCCCCCCcCccCCCCCC-CHHHHHHHHHHHhhhcchhHhhhhHHHHhhhhhccCCCC
Q 027238 70 DGTLAGDFGFDPLGLGE-DPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRE 125 (226)
Q Consensus 70 ~G~~pGd~GfDPlGl~~-d~e~l~~~r~aElkhGRlAMlA~~G~~~~e~~~~~G~~~ 125 (226)
|..+|||++|||+||.+ |+++++++|.+||||||+||+|++|+++|+++++.|++.
T Consensus 192 d~~~PG~~~fDPlgl~~~~~e~~~~~~~~Ei~nGRlAMla~~g~~~~~~~tg~g~l~ 248 (269)
T 2wsc_2 192 DVGYPGGLWFDPLGWGSASPQKLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPID 248 (269)
T ss_dssp SCSCTTCSSCCCSSSSSSCCCSCTTSTTTTHHHHHHHHTTTSSSCHHHHHTTTCSSC
T ss_pred ccCCCCCcccCccccCcccHHHHHHHHHhhcccchHHHHHHHHHHHHHHhcCCChHH
Confidence 44689999999999974 788899999999999999999999999999999988763
No 11
>2wsc_1 AT3G54890, LHCA1; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_1* 2wsf_1* 2o01_1* 3lw5_1*
Probab=99.27 E-value=3e-13 Score=118.98 Aligned_cols=54 Identities=28% Similarity=0.448 Sum_probs=48.8
Q ss_pred CCCCCCCcCccCCCCCCCHHHHHHHHHHHhhhcchhHhhhhHHHHhh-hhhccCCC
Q 027238 70 DGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTD-LLRVTGIR 124 (226)
Q Consensus 70 ~G~~pGd~GfDPlGl~~d~e~l~~~r~aElkhGRlAMlA~~G~~~~e-~~~~~G~~ 124 (226)
++.+||+ +|||+||.+|+++++++|.+||||||+||+|++|+++++ .+++.|++
T Consensus 164 ~~~yPgg-~fDPlgl~~~~~~~~~~r~~E~~nGRlAM~a~~g~~~~~~~~tG~gpl 218 (241)
T 2wsc_1 164 KKKYPGG-AFDPLGYSKDPKKLEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPL 218 (241)
T ss_dssp CSSSCSC-CSCSSSCSCSSSSCCCSCTTHHHHHHHHHHHHHSGGGGGSSSCCSCCC
T ss_pred CCCCCCC-cccccccccchhHHHHHHHhhcccccHHHHHHHHHHHhhhhcCCCchH
Confidence 4578998 599999999999999999999999999999999999999 47877766
No 12
>2wsc_4 Chlorophyll A-B binding protein P4, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_4* 2wsf_4* 3lw5_4* 2o01_4*
Probab=99.03 E-value=2.9e-11 Score=106.85 Aligned_cols=47 Identities=19% Similarity=0.321 Sum_probs=42.7
Q ss_pred CCCCCcCccCCCCCCCHHHHHHHHHHHhhhcchhHhhhhHHHHhhhhhccCCC
Q 027238 72 TLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR 124 (226)
Q Consensus 72 ~~pGd~GfDPlGl~~d~e~l~~~r~aElkhGRlAMlA~~G~~~~e~~~~~G~~ 124 (226)
.+|||+ ||||||.+ ++++|.+||||||+ |+|++|+++|+++++.|++
T Consensus 183 ~yPGg~-FDPLgl~~----~~~~k~kELkNGRL-MlAilGf~vQe~vTG~gPl 229 (251)
T 2wsc_4 183 GYPGGI-FNPLNFAP----TLEAKEKEIANGRL-MLAFLGFIIQHNVTGKGPF 229 (251)
T ss_dssp HSSCCT-TCCCCCCS----SSSCTTHHHHHHHT-TTTHHHHHHHHTTSCCCCC
T ss_pred cCCCCc-cCccchhH----HHHHHHHHHhcchh-HHHHHHHHHHHHhcCccHH
Confidence 479998 99999975 66788999999999 9999999999999988876
No 13
>2dpr_A CON-T(K7GLA); conantoxin, nmdar antagonist, GLA-containing, metal B protein; HET: CGU; 1.70A {Synthetic} PDB: 1ont_A*
Probab=20.72 E-value=61 Score=18.40 Aligned_cols=15 Identities=27% Similarity=0.200 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHhhhc
Q 027238 88 PESLRWYVQAELVHA 102 (226)
Q Consensus 88 ~e~l~~~r~aElkhG 102 (226)
+|-+..+|++|+|.-
T Consensus 6 qemlenlreaevkkn 20 (26)
T 2dpr_A 6 QEMLENLREAEVKKN 20 (26)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc
Confidence 456788999999853
Done!