Query 027239
Match_columns 226
No_of_seqs 155 out of 1803
Neff 9.3
Searched_HMMs 46136
Date Fri Mar 29 07:00:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027239.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027239hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0034 Ca2+/calmodulin-depend 100.0 9.3E-27 2E-31 178.3 18.7 180 16-206 1-187 (187)
2 COG5126 FRQ1 Ca2+-binding prot 99.9 9.5E-26 2.1E-30 167.2 17.8 151 36-197 8-159 (160)
3 KOG0044 Ca2+ sensor (EF-Hand s 99.9 2.4E-25 5.1E-30 170.6 16.9 179 16-204 1-185 (193)
4 KOG0027 Calmodulin and related 99.9 1E-21 2.2E-26 147.6 16.9 143 42-194 2-149 (151)
5 PTZ00183 centrin; Provisional 99.9 1.7E-20 3.6E-25 141.6 18.0 149 39-197 8-157 (158)
6 PTZ00184 calmodulin; Provision 99.8 1.8E-19 3.9E-24 134.4 17.9 144 41-194 4-148 (149)
7 KOG0038 Ca2+-binding kinase in 99.8 2.5E-19 5.4E-24 128.4 12.6 178 16-204 1-187 (189)
8 KOG0028 Ca2+-binding protein ( 99.8 2.1E-18 4.5E-23 125.6 15.7 147 38-194 23-170 (172)
9 KOG0031 Myosin regulatory ligh 99.8 3.2E-17 6.9E-22 118.7 16.2 141 40-194 24-165 (171)
10 KOG0030 Myosin essential light 99.7 2.5E-16 5.4E-21 112.2 13.5 142 41-193 4-150 (152)
11 KOG0037 Ca2+-binding protein, 99.7 2.7E-16 5.8E-21 120.6 13.6 158 47-221 56-218 (221)
12 KOG0036 Predicted mitochondria 99.6 1.2E-14 2.7E-19 120.6 14.7 139 42-196 8-148 (463)
13 PF13499 EF-hand_7: EF-hand do 99.4 9.4E-13 2E-17 84.7 8.3 66 123-192 1-66 (66)
14 PLN02964 phosphatidylserine de 99.4 4.8E-12 1E-16 113.3 13.4 113 31-150 124-243 (644)
15 KOG0027 Calmodulin and related 99.3 5.2E-11 1.1E-15 89.4 11.8 104 86-194 9-113 (151)
16 KOG4223 Reticulocalbin, calume 99.3 3.1E-11 6.6E-16 98.0 10.1 137 44-190 159-301 (325)
17 KOG0377 Protein serine/threoni 99.3 7.6E-11 1.7E-15 99.0 12.3 137 49-194 465-615 (631)
18 KOG0037 Ca2+-binding protein, 99.3 1.5E-10 3.4E-15 89.1 12.7 130 39-193 88-219 (221)
19 cd05022 S-100A13 S-100A13: S-1 99.2 8.2E-11 1.8E-15 79.9 7.7 67 122-195 8-76 (89)
20 PTZ00183 centrin; Provisional 99.2 1.1E-09 2.4E-14 82.3 13.0 100 87-194 19-118 (158)
21 KOG2562 Protein phosphatase 2 99.2 3.1E-10 6.7E-15 96.0 10.8 146 40-190 270-420 (493)
22 PTZ00184 calmodulin; Provision 99.1 8.7E-10 1.9E-14 81.8 11.7 100 87-194 13-112 (149)
23 KOG4223 Reticulocalbin, calume 99.1 5.2E-10 1.1E-14 90.9 10.4 142 46-196 75-230 (325)
24 KOG0044 Ca2+ sensor (EF-Hand s 99.1 6E-10 1.3E-14 85.8 9.6 130 14-149 34-174 (193)
25 cd05027 S-100B S-100B: S-100B 99.1 7.6E-10 1.6E-14 75.1 8.6 69 122-194 8-79 (88)
26 COG5126 FRQ1 Ca2+-binding prot 99.1 3.1E-09 6.8E-14 79.2 12.2 99 87-194 22-120 (160)
27 cd05026 S-100Z S-100Z: S-100Z 99.0 3.4E-09 7.5E-14 72.8 8.9 69 123-195 11-82 (93)
28 PF13499 EF-hand_7: EF-hand do 99.0 1.4E-09 3E-14 69.8 5.8 61 49-111 1-66 (66)
29 cd05025 S-100A1 S-100A1: S-100 99.0 6.4E-09 1.4E-13 71.3 9.2 72 121-196 8-82 (92)
30 cd05031 S-100A10_like S-100A10 99.0 5.7E-09 1.2E-13 71.8 8.9 72 121-196 7-81 (94)
31 cd05029 S-100A6 S-100A6: S-100 98.9 6.5E-09 1.4E-13 70.5 8.2 67 123-194 11-79 (88)
32 KOG0028 Ca2+-binding protein ( 98.9 2.1E-08 4.5E-13 73.7 11.1 100 87-194 35-134 (172)
33 smart00027 EH Eps15 homology d 98.9 1.1E-08 2.4E-13 70.7 8.8 71 41-114 3-73 (96)
34 cd05022 S-100A13 S-100A13: S-1 98.9 8.3E-09 1.8E-13 70.0 7.8 69 45-115 5-77 (89)
35 cd05026 S-100Z S-100Z: S-100Z 98.8 2.5E-08 5.4E-13 68.5 8.4 68 46-115 8-83 (93)
36 smart00027 EH Eps15 homology d 98.8 3.4E-08 7.3E-13 68.3 9.0 85 121-221 9-93 (96)
37 cd05023 S-100A11 S-100A11: S-1 98.8 3.8E-08 8.3E-13 66.9 8.7 69 122-194 9-80 (89)
38 KOG0034 Ca2+/calmodulin-depend 98.8 3.1E-08 6.8E-13 76.3 9.2 97 51-149 69-174 (187)
39 PLN02964 phosphatidylserine de 98.8 6.7E-08 1.4E-12 87.1 12.6 98 86-195 144-244 (644)
40 cd00213 S-100 S-100: S-100 dom 98.8 4.2E-08 9E-13 66.6 8.6 71 121-195 7-80 (88)
41 cd00052 EH Eps15 homology doma 98.8 2.4E-08 5.3E-13 63.9 7.1 60 125-194 2-61 (67)
42 cd05027 S-100B S-100B: S-100B 98.8 3.8E-08 8.2E-13 66.8 8.2 67 46-114 6-80 (88)
43 PF13833 EF-hand_8: EF-hand do 98.8 3.7E-08 8E-13 60.5 6.6 52 135-194 1-53 (54)
44 cd00213 S-100 S-100: S-100 dom 98.7 8.1E-08 1.8E-12 65.2 8.0 69 44-114 4-80 (88)
45 cd00051 EFh EF-hand, calcium b 98.7 7.7E-08 1.7E-12 59.8 7.3 61 124-192 2-62 (63)
46 cd00252 SPARC_EC SPARC_EC; ext 98.7 6.8E-08 1.5E-12 68.8 7.6 64 119-194 45-108 (116)
47 KOG4251 Calcium binding protei 98.7 6.9E-08 1.5E-12 75.8 7.8 145 47-193 100-308 (362)
48 cd05029 S-100A6 S-100A6: S-100 98.7 1.7E-07 3.7E-12 63.6 8.6 68 45-114 7-80 (88)
49 cd00052 EH Eps15 homology doma 98.7 1.2E-07 2.6E-12 60.6 7.4 60 51-113 2-61 (67)
50 KOG0040 Ca2+-binding actin-bun 98.7 7.9E-07 1.7E-11 84.5 15.3 142 38-193 2243-2397(2399)
51 cd05025 S-100A1 S-100A1: S-100 98.7 1.1E-07 2.5E-12 65.1 7.4 68 46-115 7-82 (92)
52 KOG2643 Ca2+ binding protein, 98.7 1.2E-07 2.6E-12 80.0 8.9 133 47-194 317-453 (489)
53 KOG4666 Predicted phosphate ac 98.7 6.3E-08 1.4E-12 78.8 6.9 154 33-200 211-365 (412)
54 cd05023 S-100A11 S-100A11: S-1 98.6 2.1E-07 4.6E-12 63.2 8.2 68 45-114 6-81 (89)
55 cd05031 S-100A10_like S-100A10 98.6 3.6E-07 7.7E-12 62.9 8.2 65 47-113 7-79 (94)
56 cd00252 SPARC_EC SPARC_EC; ext 98.6 4.1E-07 8.8E-12 64.8 8.1 65 42-111 42-106 (116)
57 KOG0041 Predicted Ca2+-binding 98.5 8.1E-07 1.7E-11 67.8 9.2 116 30-147 81-200 (244)
58 PF14658 EF-hand_9: EF-hand do 98.5 5.9E-07 1.3E-11 56.7 7.0 61 126-194 2-64 (66)
59 KOG0036 Predicted mitochondria 98.5 2.1E-06 4.5E-11 72.3 11.6 124 84-220 13-143 (463)
60 cd00051 EFh EF-hand, calcium b 98.5 1.2E-06 2.6E-11 54.3 8.0 59 88-147 3-61 (63)
61 cd05030 calgranulins Calgranul 98.5 7.3E-07 1.6E-11 60.5 7.3 66 122-194 8-79 (88)
62 cd05024 S-100A10 S-100A10: A s 98.5 1.5E-06 3.3E-11 58.7 8.6 68 45-115 5-78 (91)
63 cd05030 calgranulins Calgranul 98.4 1.7E-06 3.8E-11 58.7 7.7 70 45-114 5-80 (88)
64 KOG2643 Ca2+ binding protein, 98.4 9.6E-07 2.1E-11 74.7 6.9 121 63-196 212-348 (489)
65 PF13833 EF-hand_8: EF-hand do 98.4 2.3E-06 4.9E-11 52.4 6.7 48 100-147 3-50 (54)
66 PF00036 EF-hand_1: EF hand; 98.3 8.4E-07 1.8E-11 47.0 3.9 27 124-150 2-28 (29)
67 KOG0751 Mitochondrial aspartat 98.3 2.9E-05 6.3E-10 66.9 14.3 151 40-195 28-208 (694)
68 KOG0751 Mitochondrial aspartat 98.2 3.1E-05 6.7E-10 66.7 11.9 120 63-190 87-240 (694)
69 KOG0030 Myosin essential light 98.2 4.7E-05 1E-09 54.9 10.9 104 85-194 11-116 (152)
70 cd05024 S-100A10 S-100A10: A s 98.2 2.3E-05 4.9E-10 53.0 8.5 68 123-195 9-77 (91)
71 PF14658 EF-hand_9: EF-hand do 98.2 9.6E-06 2.1E-10 51.2 6.2 60 90-149 3-63 (66)
72 KOG0041 Predicted Ca2+-binding 98.1 9.4E-06 2E-10 62.0 7.2 65 122-194 99-163 (244)
73 KOG0031 Myosin regulatory ligh 98.1 3.3E-05 7.3E-10 56.7 9.2 97 87-195 34-130 (171)
74 PRK12309 transaldolase/EF-hand 98.1 2.2E-05 4.8E-10 67.4 9.8 104 66-194 281-385 (391)
75 KOG0038 Ca2+-binding kinase in 98.1 2.2E-05 4.8E-10 57.1 8.0 94 54-149 77-176 (189)
76 PF00036 EF-hand_1: EF hand; 98.1 5.9E-06 1.3E-10 43.7 3.3 27 87-113 2-28 (29)
77 PF12763 EF-hand_4: Cytoskelet 98.0 1.1E-05 2.3E-10 56.4 5.3 70 41-114 3-72 (104)
78 PF13405 EF-hand_6: EF-hand do 98.0 1.6E-05 3.5E-10 42.7 3.9 27 123-149 1-27 (31)
79 KOG0169 Phosphoinositide-speci 97.9 0.00052 1.1E-08 62.3 13.9 172 41-221 129-303 (746)
80 PF13202 EF-hand_5: EF hand; P 97.7 5.2E-05 1.1E-09 38.6 3.5 24 124-147 1-24 (25)
81 PF13202 EF-hand_5: EF hand; P 97.7 6.8E-05 1.5E-09 38.2 3.2 24 169-192 2-25 (25)
82 KOG0046 Ca2+-binding actin-bun 97.7 0.00018 3.8E-09 62.6 7.5 76 38-116 9-88 (627)
83 PRK12309 transaldolase/EF-hand 97.6 0.00018 3.8E-09 61.9 7.3 54 84-151 333-386 (391)
84 PF12763 EF-hand_4: Cytoskelet 97.6 0.00038 8.2E-09 48.6 7.7 65 119-194 7-71 (104)
85 KOG4065 Uncharacterized conser 97.6 0.00027 5.8E-09 49.3 6.5 66 126-191 71-142 (144)
86 KOG4251 Calcium binding protei 97.6 0.00033 7.2E-09 55.4 7.2 134 49-191 199-342 (362)
87 PF10591 SPARC_Ca_bdg: Secrete 97.6 7.6E-05 1.6E-09 53.0 3.3 67 40-109 46-112 (113)
88 PF13405 EF-hand_6: EF-hand do 97.4 0.00019 4E-09 38.5 3.0 26 50-77 2-27 (31)
89 KOG0040 Ca2+-binding actin-bun 97.4 0.0018 4E-08 62.7 10.8 99 87-193 2255-2360(2399)
90 PF14788 EF-hand_10: EF hand; 97.3 0.00078 1.7E-08 40.2 5.0 47 67-113 2-49 (51)
91 PF14788 EF-hand_10: EF hand; 97.3 0.0012 2.7E-08 39.3 5.6 48 139-194 2-49 (51)
92 KOG2562 Protein phosphatase 2 97.3 0.0019 4.2E-08 55.5 8.9 135 47-195 173-344 (493)
93 KOG1029 Endocytic adaptor prot 97.2 0.0047 1E-07 56.3 10.9 140 40-193 8-256 (1118)
94 PF10591 SPARC_Ca_bdg: Secrete 97.0 0.00059 1.3E-08 48.4 2.5 62 119-190 51-112 (113)
95 KOG0377 Protein serine/threoni 96.9 0.0038 8.2E-08 53.6 7.1 102 41-151 509-616 (631)
96 PLN02952 phosphoinositide phos 96.9 0.016 3.5E-07 52.5 11.4 119 98-221 13-137 (599)
97 PF09279 EF-hand_like: Phospho 96.8 0.01 2.2E-07 39.4 7.3 69 123-195 1-70 (83)
98 PF09069 EF-hand_3: EF-hand; 96.7 0.014 3.1E-07 39.4 7.4 80 121-203 2-84 (90)
99 KOG0046 Ca2+-binding actin-bun 96.7 0.0068 1.5E-07 53.1 7.2 66 123-194 20-85 (627)
100 KOG0035 Ca2+-binding actin-bun 96.6 0.011 2.4E-07 55.2 8.3 107 37-146 736-848 (890)
101 smart00054 EFh EF-hand, calciu 96.5 0.005 1.1E-07 31.0 3.5 26 124-149 2-27 (29)
102 KOG4347 GTPase-activating prot 96.3 0.013 2.8E-07 52.7 6.8 112 31-144 487-612 (671)
103 smart00054 EFh EF-hand, calciu 96.1 0.011 2.4E-07 29.6 3.5 26 169-194 3-28 (29)
104 PF09279 EF-hand_like: Phospho 95.4 0.084 1.8E-06 35.0 6.4 61 87-148 2-67 (83)
105 KOG4065 Uncharacterized conser 95.1 0.1 2.3E-06 36.6 6.2 66 40-109 61-141 (144)
106 KOG1707 Predicted Ras related/ 95.1 0.29 6.3E-06 44.0 10.2 154 39-199 186-348 (625)
107 KOG4666 Predicted phosphate ac 94.8 0.13 2.9E-06 42.7 6.9 97 48-148 259-357 (412)
108 KOG0039 Ferric reductase, NADH 94.1 0.18 3.9E-06 46.6 7.2 95 99-201 2-96 (646)
109 KOG1265 Phospholipase C [Lipid 94.0 2.5 5.4E-05 40.1 13.8 154 50-214 148-320 (1189)
110 KOG0042 Glycerol-3-phosphate d 93.6 0.16 3.5E-06 45.3 5.6 99 6-116 561-660 (680)
111 KOG1955 Ral-GTPase effector RA 93.4 0.25 5.4E-06 43.4 6.2 77 35-114 218-294 (737)
112 KOG3555 Ca2+-binding proteogly 93.3 0.14 3E-06 42.9 4.4 62 121-194 249-310 (434)
113 KOG0169 Phosphoinositide-speci 93.1 0.98 2.1E-05 41.8 9.8 97 85-194 136-232 (746)
114 KOG3866 DNA-binding protein of 92.8 0.39 8.5E-06 39.7 6.2 70 125-194 247-324 (442)
115 KOG3555 Ca2+-binding proteogly 92.3 0.25 5.4E-06 41.4 4.6 103 42-151 201-311 (434)
116 PF09068 EF-hand_2: EF hand; 91.9 3.3 7.2E-05 29.9 9.6 93 33-148 26-123 (127)
117 PF08414 NADPH_Ox: Respiratory 91.8 0.36 7.7E-06 33.0 4.1 66 44-115 26-94 (100)
118 PF05517 p25-alpha: p25-alpha 91.6 0.82 1.8E-05 34.2 6.4 65 48-114 2-70 (154)
119 KOG4578 Uncharacterized conser 91.3 0.16 3.5E-06 42.2 2.4 61 90-150 338-398 (421)
120 KOG0998 Synaptic vesicle prote 91.0 0.32 7E-06 46.3 4.5 142 39-194 120-345 (847)
121 KOG1029 Endocytic adaptor prot 90.8 0.37 8.1E-06 44.5 4.5 64 47-113 194-257 (1118)
122 KOG4578 Uncharacterized conser 90.6 0.19 4.1E-06 41.8 2.3 68 123-197 334-401 (421)
123 PF08726 EFhand_Ca_insen: Ca2+ 90.3 0.22 4.8E-06 31.9 1.9 29 119-148 3-31 (69)
124 KOG2243 Ca2+ release channel ( 89.9 0.57 1.2E-05 46.2 5.0 58 127-193 4062-4119(5019)
125 PLN02230 phosphoinositide phos 88.4 3 6.6E-05 38.1 8.4 99 120-221 27-129 (598)
126 PF05042 Caleosin: Caleosin re 88.4 2.4 5.2E-05 32.2 6.6 41 158-202 92-132 (174)
127 PF05042 Caleosin: Caleosin re 88.3 6.1 0.00013 30.1 8.6 61 87-148 98-164 (174)
128 KOG4347 GTPase-activating prot 86.6 2 4.3E-05 39.2 6.1 78 102-188 535-612 (671)
129 PLN02223 phosphoinositide phos 86.5 4.5 9.7E-05 36.5 8.2 101 119-221 13-120 (537)
130 KOG4286 Dystrophin-like protei 86.5 8.4 0.00018 36.0 9.9 159 34-202 406-588 (966)
131 KOG1955 Ral-GTPase effector RA 85.1 2.4 5.3E-05 37.5 5.7 63 121-193 230-292 (737)
132 KOG0042 Glycerol-3-phosphate d 85.0 2 4.3E-05 38.7 5.2 63 124-194 595-657 (680)
133 KOG3866 DNA-binding protein of 84.0 3.6 7.7E-05 34.3 5.9 88 52-148 248-352 (442)
134 PF05517 p25-alpha: p25-alpha 84.0 6.3 0.00014 29.4 7.0 65 125-194 2-69 (154)
135 KOG0035 Ca2+-binding actin-bun 82.4 4.3 9.4E-05 38.6 6.6 70 122-195 747-817 (890)
136 PLN02952 phosphoinositide phos 79.8 23 0.00049 32.7 10.1 85 63-148 13-108 (599)
137 KOG2243 Ca2+ release channel ( 78.8 4.1 8.9E-05 40.7 5.2 56 54-111 4063-4118(5019)
138 KOG1707 Predicted Ras related/ 78.0 5.5 0.00012 36.1 5.5 91 39-135 306-399 (625)
139 KOG2557 Uncharacterized conser 77.3 20 0.00044 30.7 8.3 156 43-201 15-182 (427)
140 PLN02228 Phosphoinositide phos 77.0 15 0.00032 33.6 8.0 94 119-221 21-120 (567)
141 KOG4004 Matricellular protein 75.6 1.5 3.2E-05 34.1 1.2 55 91-148 193-248 (259)
142 cd07313 terB_like_2 tellurium 74.4 16 0.00035 24.8 6.2 83 63-147 12-97 (104)
143 PF04876 Tenui_NCP: Tenuivirus 73.4 25 0.00054 26.0 6.9 48 157-207 126-173 (175)
144 PLN02222 phosphoinositide phos 72.5 20 0.00044 32.8 7.7 92 120-221 23-117 (581)
145 PF09068 EF-hand_2: EF hand; 72.2 18 0.0004 26.1 6.1 72 122-193 41-124 (127)
146 PF01023 S_100: S-100/ICaBP ty 72.0 13 0.00027 21.4 4.3 33 46-78 4-36 (44)
147 PF08726 EFhand_Ca_insen: Ca2+ 70.9 3.1 6.7E-05 26.6 1.7 56 48-109 6-65 (69)
148 PF14513 DAG_kinase_N: Diacylg 70.9 8.6 0.00019 28.2 4.2 71 64-135 5-82 (138)
149 PF08976 DUF1880: Domain of un 67.2 5.1 0.00011 28.3 2.2 33 159-195 4-36 (118)
150 PF12174 RST: RCD1-SRO-TAF4 (R 66.1 11 0.00024 24.1 3.5 36 39-79 19-54 (70)
151 KOG0998 Synaptic vesicle prote 64.0 4.8 0.0001 38.6 2.1 72 41-115 276-347 (847)
152 KOG2871 Uncharacterized conser 62.1 7.1 0.00015 33.4 2.6 63 120-189 307-369 (449)
153 KOG4301 Beta-dystrobrevin [Cyt 61.9 27 0.00058 29.7 5.8 117 88-215 113-239 (434)
154 TIGR01848 PHA_reg_PhaR polyhyd 58.8 20 0.00043 25.0 3.8 20 129-148 10-29 (107)
155 PRK13344 spxA transcriptional 57.5 42 0.00091 24.3 5.7 73 137-216 35-107 (132)
156 PF08414 NADPH_Ox: Respiratory 57.4 60 0.0013 22.3 6.8 61 124-194 32-92 (100)
157 cd07313 terB_like_2 tellurium 56.5 59 0.0013 21.9 6.8 81 99-188 13-94 (104)
158 cd03034 ArsC_ArsC Arsenate Red 52.5 36 0.00078 23.7 4.6 69 137-215 34-105 (112)
159 PF05920 Homeobox_KN: Homeobox 51.4 9.3 0.0002 21.5 1.1 28 25-52 8-35 (40)
160 PLN02228 Phosphoinositide phos 51.3 95 0.002 28.6 8.0 61 86-148 25-90 (567)
161 PF14513 DAG_kinase_N: Diacylg 51.2 52 0.0011 24.1 5.3 68 100-177 6-80 (138)
162 PRK10236 hypothetical protein; 50.3 1.3E+02 0.0029 24.2 10.3 115 40-169 15-139 (237)
163 PF00404 Dockerin_1: Dockerin 48.8 22 0.00048 17.0 2.0 16 132-147 1-16 (21)
164 PF09069 EF-hand_3: EF-hand; 47.7 85 0.0019 21.2 7.1 62 48-114 3-76 (90)
165 cd03032 ArsC_Spx Arsenate Redu 46.2 69 0.0015 22.3 5.2 72 137-215 35-106 (115)
166 PF13608 Potyvirid-P3: Protein 45.5 21 0.00045 31.7 2.9 66 45-113 286-355 (445)
167 KOG4004 Matricellular protein 45.4 15 0.00034 28.6 1.8 57 127-193 192-249 (259)
168 cd02977 ArsC_family Arsenate R 44.8 51 0.0011 22.4 4.3 55 137-200 34-91 (105)
169 KOG3442 Uncharacterized conser 43.6 70 0.0015 22.9 4.7 42 136-182 53-94 (132)
170 TIGR00014 arsC arsenate reduct 43.3 58 0.0013 22.8 4.5 70 137-215 34-106 (114)
171 KOG3449 60S acidic ribosomal p 42.8 1E+02 0.0022 21.6 5.3 41 124-168 3-43 (112)
172 PLN02222 phosphoinositide phos 42.3 98 0.0021 28.6 6.7 64 43-113 23-90 (581)
173 KOG1264 Phospholipase C [Lipid 42.0 2.7E+02 0.0057 27.1 9.3 149 40-194 135-293 (1267)
174 PF13720 Acetyltransf_11: Udp 41.8 1E+02 0.0022 20.3 5.4 52 38-95 24-75 (83)
175 COG1393 ArsC Arsenate reductas 40.4 92 0.002 22.1 5.1 72 138-216 37-108 (117)
176 PF05099 TerB: Tellurite resis 40.4 27 0.00059 25.1 2.5 91 48-144 24-118 (140)
177 cd03035 ArsC_Yffb Arsenate Red 40.4 48 0.001 22.9 3.6 52 138-200 35-89 (105)
178 PRK12559 transcriptional regul 40.3 73 0.0016 23.0 4.7 73 137-216 35-107 (131)
179 PF11569 Homez: Homeodomain le 39.4 37 0.0008 20.7 2.5 26 28-53 23-48 (56)
180 PTZ00373 60S Acidic ribosomal 39.0 1.2E+02 0.0026 21.4 5.3 41 124-168 5-45 (112)
181 PF03960 ArsC: ArsC family; I 39.0 17 0.00038 25.1 1.2 72 138-215 32-103 (110)
182 TIGR02675 tape_meas_nterm tape 38.9 75 0.0016 20.4 4.1 37 38-78 6-42 (75)
183 PF03705 CheR_N: CheR methyltr 38.0 56 0.0012 19.3 3.3 51 142-197 3-56 (57)
184 PRK01655 spxA transcriptional 36.1 1E+02 0.0022 22.2 4.9 43 172-215 64-106 (131)
185 PF08349 DUF1722: Protein of u 35.4 1.6E+02 0.0034 20.7 6.2 35 156-194 63-97 (117)
186 cd05833 Ribosomal_P2 Ribosomal 34.3 1.5E+02 0.0033 20.7 5.3 41 124-168 3-43 (109)
187 cd00086 homeodomain Homeodomai 33.8 37 0.00081 20.0 2.0 27 27-53 24-50 (59)
188 KOG1954 Endocytosis/signaling 33.3 83 0.0018 27.5 4.5 21 88-108 480-500 (532)
189 PF01325 Fe_dep_repress: Iron 32.7 84 0.0018 19.2 3.4 33 42-78 2-34 (60)
190 PRK10026 arsenate reductase; P 32.6 91 0.002 22.9 4.2 57 137-200 37-93 (141)
191 PF00427 PBS_linker_poly: Phyc 32.4 1.7E+02 0.0036 21.3 5.4 21 180-200 42-62 (131)
192 PF07879 PHB_acc_N: PHB/PHA ac 32.3 40 0.00086 21.1 1.9 22 129-150 10-31 (64)
193 PF09682 Holin_LLH: Phage holi 31.3 1.8E+02 0.0039 20.1 6.1 52 124-175 53-104 (108)
194 COG5562 Phage envelope protein 31.3 38 0.00083 24.7 1.9 25 89-113 76-100 (137)
195 PLN02230 phosphoinositide phos 31.1 2E+02 0.0042 26.8 6.8 64 84-148 28-100 (598)
196 PF09851 SHOCT: Short C-termin 30.9 86 0.0019 16.3 3.0 13 63-75 13-25 (31)
197 PF05872 DUF853: Bacterial pro 30.8 1.6E+02 0.0034 26.5 5.9 122 66-204 105-236 (502)
198 KOG2301 Voltage-gated Ca2+ cha 30.7 43 0.00093 34.7 2.8 70 41-113 1410-1484(1592)
199 COG4359 Uncharacterized conser 30.1 1.7E+02 0.0036 22.9 5.2 43 64-111 11-53 (220)
200 cd03033 ArsC_15kD Arsenate Red 29.0 1.1E+02 0.0024 21.4 4.0 36 181-216 70-105 (113)
201 COG4103 Uncharacterized protei 28.9 2.2E+02 0.0048 21.1 5.5 91 52-148 34-127 (148)
202 PF11829 DUF3349: Protein of u 28.5 2E+02 0.0043 19.7 5.6 64 102-169 20-83 (96)
203 cd07316 terB_like_DjlA N-termi 28.2 1.9E+02 0.0041 19.4 8.3 79 63-144 12-95 (106)
204 PF05099 TerB: Tellurite resis 28.1 2.1E+02 0.0046 20.2 5.6 81 98-187 36-117 (140)
205 PF04876 Tenui_NCP: Tenuivirus 27.9 2.6E+02 0.0056 20.9 6.9 77 84-169 82-159 (175)
206 cd06404 PB1_aPKC PB1 domain is 27.4 1.9E+02 0.0041 19.2 4.8 40 101-140 19-77 (83)
207 KOG0506 Glutaminase (contains 26.6 2.2E+02 0.0047 25.7 6.0 73 124-200 88-164 (622)
208 PF12872 OST-HTH: OST-HTH/LOTU 25.7 1.7E+02 0.0038 18.1 5.0 42 136-200 21-62 (74)
209 PF03979 Sigma70_r1_1: Sigma-7 25.3 1.3E+02 0.0029 19.6 3.6 34 63-97 18-51 (82)
210 PF04282 DUF438: Family of unk 25.0 1.2E+02 0.0027 19.4 3.3 50 140-200 14-63 (71)
211 TIGR02787 codY_Gpos GTP-sensin 24.9 2.1E+02 0.0045 23.3 5.2 34 40-76 175-208 (251)
212 cd07177 terB_like tellurium re 24.2 1.7E+02 0.0038 19.1 4.3 42 103-146 55-96 (104)
213 TIGR01616 nitro_assoc nitrogen 24.0 1.7E+02 0.0037 20.9 4.3 36 181-216 71-106 (126)
214 COG5394 Uncharacterized protei 22.9 1.2E+02 0.0026 22.9 3.3 20 130-149 20-39 (193)
215 KOG4403 Cell surface glycoprot 22.9 1.8E+02 0.004 25.7 4.8 84 63-151 41-130 (575)
216 PRK12461 UDP-N-acetylglucosami 22.3 3.8E+02 0.0083 21.7 6.5 53 38-96 196-248 (255)
217 PF08100 Dimerisation: Dimeris 22.2 1.1E+02 0.0024 18.1 2.5 39 53-93 11-49 (51)
218 KOG2871 Uncharacterized conser 21.9 1E+02 0.0023 26.6 3.1 63 83-145 307-369 (449)
219 PLN00138 large subunit ribosom 21.5 3E+02 0.0065 19.4 5.3 40 125-168 4-43 (113)
220 PF04558 tRNA_synt_1c_R1: Glut 20.9 2.6E+02 0.0056 21.1 4.9 51 119-174 82-132 (164)
221 PF09373 PMBR: Pseudomurein-bi 20.7 1.1E+02 0.0023 16.2 2.0 13 100-112 3-15 (33)
222 PF02337 Gag_p10: Retroviral G 20.6 2.7E+02 0.0059 18.7 4.4 50 142-191 8-58 (90)
223 TIGR03573 WbuX N-acetyl sugar 20.6 2.6E+02 0.0057 23.7 5.4 11 137-147 301-311 (343)
224 PLN02508 magnesium-protoporphy 20.5 4.2E+02 0.0091 22.6 6.3 15 132-146 89-103 (357)
225 PLN02223 phosphoinositide phos 20.5 4.4E+02 0.0095 24.2 6.9 61 50-113 18-92 (537)
226 smart00389 HOX Homeodomain. DN 20.0 92 0.002 18.0 1.9 25 28-52 25-49 (56)
No 1
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=99.95 E-value=9.3e-27 Score=178.27 Aligned_cols=180 Identities=46% Similarity=0.703 Sum_probs=159.5
Q ss_pred hhccccccccCCCCCCCHHHHHhhcC----CCHHHHHHHHHHHHhhcccCCCCCCccHHHHHHHHhccCCcchHHHHHHH
Q 027239 16 VNCCDADLYKQPRGLEDPEALARETV----FSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTNKKESLFADRVF 91 (226)
Q Consensus 16 mg~~~s~~~~~~~~~~~~~~~~~~~~----~s~~~i~~l~~~F~~~D~~~~~~G~i~~~ef~~~l~~~~~~~~~~~~~lf 91 (226)
||+..|.... +++++.+...+. ||.+||.+|+.+|.++|.+. ++|.|+.+||..+. ....+++..+++
T Consensus 1 Mg~~~s~~~~----~~~~~~~~~~~~~~~~fs~~EI~~L~~rF~kl~~~~-~~g~lt~eef~~i~---~~~~Np~~~rI~ 72 (187)
T KOG0034|consen 1 MGNLSSTLLS----DEDLEELQMYTGDPTQFSANEIERLYERFKKLDRNN-GDGYLTKEEFLSIP---ELALNPLADRII 72 (187)
T ss_pred CCcccccccc----hhhhHHHHhccCCCcccCHHHHHHHHHHHHHhcccc-ccCccCHHHHHHHH---HHhcCcHHHHHH
Confidence 7887775532 467888888888 99999999999999999874 78999999999876 445577889999
Q ss_pred HHHcCCCCCC-ccHHHHHHHHHhhCCCCCcHHHHHHHHHHhcCCCCCceeHHHHHHHHHHHHhhcCCCC--CHHHHHHHH
Q 027239 92 DLFDTKHNGI-LDFEEFARALSIFHPNSPIDDKIEFSFQLYDLKQQGFIERQEVKQMVVATLTESGMNL--SDDVIESII 168 (226)
Q Consensus 92 ~~~d~~~~g~-i~~~eF~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~I~~~e~~~~l~~~~~~~~~~~--~~~~~~~~~ 168 (226)
+.++.+++|. |+|++|+..++.+......+++++.+|++||.+++|+|+.+|+..++..++ +... +++.++.++
T Consensus 73 ~~f~~~~~~~~v~F~~Fv~~ls~f~~~~~~~~Kl~faF~vYD~~~~G~I~reel~~iv~~~~---~~~~~~~~e~~~~i~ 149 (187)
T KOG0034|consen 73 DRFDTDGNGDPVDFEEFVRLLSVFSPKASKREKLRFAFRVYDLDGDGFISREELKQILRMMV---GENDDMSDEQLEDIV 149 (187)
T ss_pred HHHhccCCCCccCHHHHHHHHhhhcCCccHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHH---ccCCcchHHHHHHHH
Confidence 9999999988 999999999999998777778999999999999999999999999998874 3333 489999999
Q ss_pred HHHHHHhCCCCCCcccHHHHHHHHHhChhhhhhhhccc
Q 027239 169 DKTFEEADTKHDGKIDKEEWRNLVLRHPSLLKNMTLQY 206 (226)
Q Consensus 169 ~~~f~~~d~~~dG~Is~~eF~~~~~~~~~l~~~~~~~~ 206 (226)
..+|.++|.++||+|+++||.+++.+.|.+.+.|.++|
T Consensus 150 d~t~~e~D~d~DG~IsfeEf~~~v~~~P~~~~~m~~~~ 187 (187)
T KOG0034|consen 150 DKTFEEADTDGDGKISFEEFCKVVEKQPDLLEKMTIRF 187 (187)
T ss_pred HHHHHHhCCCCCCcCcHHHHHHHHHcCccHHHHcCCCC
Confidence 99999999999999999999999999999999887764
No 2
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.94 E-value=9.5e-26 Score=167.23 Aligned_cols=151 Identities=27% Similarity=0.484 Sum_probs=138.8
Q ss_pred HHhhcCCCHHHHHHHHHHHHhhcccCCCCCCccHHHHHHHHhccCCc-chHHHHHHHHHHcCCCCCCccHHHHHHHHHhh
Q 027239 36 LARETVFSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTNKK-ESLFADRVFDLFDTKHNGILDFEEFARALSIF 114 (226)
Q Consensus 36 ~~~~~~~s~~~i~~l~~~F~~~D~~~~~~G~i~~~ef~~~l~~~~~~-~~~~~~~lf~~~d~~~~g~i~~~eF~~~~~~~ 114 (226)
+...+.|+++++++|++.|..+|++ ++|.|++.+|..+++..+.. ++..+.+++..+|. +.+.|+|.+|+.++...
T Consensus 8 ~~~~~~~t~~qi~~lkeaF~l~D~d--~~G~I~~~el~~ilr~lg~~~s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~ 84 (160)
T COG5126 8 LLTFTQLTEEQIQELKEAFQLFDRD--SDGLIDRNELGKILRSLGFNPSEAEINKLFEEIDA-GNETVDFPEFLTVMSVK 84 (160)
T ss_pred hhhcccCCHHHHHHHHHHHHHhCcC--CCCCCcHHHHHHHHHHcCCCCcHHHHHHHHHhccC-CCCccCHHHHHHHHHHH
Confidence 5567899999999999999999999 99999999999999877644 57789999999999 88999999999999998
Q ss_pred CCCCCcHHHHHHHHHHhcCCCCCceeHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHh
Q 027239 115 HPNSPIDDKIEFSFQLYDLKQQGFIERQEVKQMVVATLTESGMNLSDDVIESIIDKTFEEADTKHDGKIDKEEWRNLVLR 194 (226)
Q Consensus 115 ~~~~~~~~~~~~~F~~~D~d~~G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~dG~Is~~eF~~~~~~ 194 (226)
....+.+++++++|+.||.|++|+|+..+++.+++.+ |..++++++++++ ..+|.+++|.|+|++|.+.+..
T Consensus 85 ~~~~~~~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~l----ge~~~deev~~ll----~~~d~d~dG~i~~~eF~~~~~~ 156 (160)
T COG5126 85 LKRGDKEEELREAFKLFDKDHDGYISIGELRRVLKSL----GERLSDEEVEKLL----KEYDEDGDGEIDYEEFKKLIKD 156 (160)
T ss_pred hccCCcHHHHHHHHHHhCCCCCceecHHHHHHHHHhh----cccCCHHHHHHHH----HhcCCCCCceEeHHHHHHHHhc
Confidence 8778889999999999999999999999999996654 9999999999988 8999999999999999999887
Q ss_pred Chh
Q 027239 195 HPS 197 (226)
Q Consensus 195 ~~~ 197 (226)
.|.
T Consensus 157 ~~~ 159 (160)
T COG5126 157 SPT 159 (160)
T ss_pred cCC
Confidence 663
No 3
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.94 E-value=2.4e-25 Score=170.61 Aligned_cols=179 Identities=31% Similarity=0.498 Sum_probs=156.0
Q ss_pred hhcc-ccccccCCCCCCCHHHHHhhcCCCHHHHHHHHHHHHhhcccCCCCCCccHHHHHHHHhccC--CcchHHHHHHHH
Q 027239 16 VNCC-DADLYKQPRGLEDPEALARETVFSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTN--KKESLFADRVFD 92 (226)
Q Consensus 16 mg~~-~s~~~~~~~~~~~~~~~~~~~~~s~~~i~~l~~~F~~~D~~~~~~G~i~~~ef~~~l~~~~--~~~~~~~~~lf~ 92 (226)
||.. .++++. +.++++...+.|+++++..+++-|.... .+|.|+.++|..++.... ..++.+++.+|.
T Consensus 1 m~~~~~~~~~~-----~~~e~l~~~t~f~~~ei~~~Yr~Fk~~c----P~G~~~~~~F~~i~~~~fp~gd~~~y~~~vF~ 71 (193)
T KOG0044|consen 1 MGKKSNSKLQP-----ESLEQLVQQTKFSKKEIQQWYRGFKNEC----PSGRLTLEEFREIYASFFPDGDASKYAELVFR 71 (193)
T ss_pred CCccccccCCc-----HHHHHHHHhcCCCHHHHHHHHHHhcccC----CCCccCHHHHHHHHHHHCCCCCHHHHHHHHHH
Confidence 4444 445544 6789999999999999999999999977 589999999999886644 345778999999
Q ss_pred HHcCCCCCCccHHHHHHHHHhhCCCCCcHHHHHHHHHHhcCCCCCceeHHHHHHHHHHHHhhcCC---CCCHHHHHHHHH
Q 027239 93 LFDTKHNGILDFEEFARALSIFHPNSPIDDKIEFSFQLYDLKQQGFIERQEVKQMVVATLTESGM---NLSDDVIESIID 169 (226)
Q Consensus 93 ~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~I~~~e~~~~l~~~~~~~~~---~~~~~~~~~~~~ 169 (226)
.+|.|++|.|+|.||+.+++...+ +..+++++++|++||.||+|+|+.+|+.+++++++...+. +..++..++.+.
T Consensus 72 ~fD~~~dg~i~F~Efi~als~~~r-Gt~eekl~w~F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~~~~~~~~~~v~ 150 (193)
T KOG0044|consen 72 TFDKNKDGTIDFLEFICALSLTSR-GTLEEKLKWAFRLYDLDGDGYITKEEMLKIVQAIYQMTGSKALPEDEETPEERVD 150 (193)
T ss_pred HhcccCCCCcCHHHHHHHHHHHcC-CcHHHHhhhhheeecCCCCceEcHHHHHHHHHHHHHHcccccCCcccccHHHHHH
Confidence 999999999999999999999888 6889999999999999999999999999999999877664 233456778888
Q ss_pred HHHHHhCCCCCCcccHHHHHHHHHhChhhhhhhhc
Q 027239 170 KTFEEADTKHDGKIDKEEWRNLVLRHPSLLKNMTL 204 (226)
Q Consensus 170 ~~f~~~d~~~dG~Is~~eF~~~~~~~~~l~~~~~~ 204 (226)
.+|+.+|.|+||.||++||...+...|.+++.++.
T Consensus 151 ~if~k~D~n~Dg~lT~eef~~~~~~d~~i~~~l~~ 185 (193)
T KOG0044|consen 151 KIFSKMDKNKDGKLTLEEFIEGCKADPSILRALEQ 185 (193)
T ss_pred HHHHHcCCCCCCcccHHHHHHHhhhCHHHHHHhhh
Confidence 89999999999999999999999999999998754
No 4
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.89 E-value=1e-21 Score=147.58 Aligned_cols=143 Identities=25% Similarity=0.421 Sum_probs=127.5
Q ss_pred CCHHHHHHHHHHHHhhcccCCCCCCccHHHHHHHHhccCCcc-hHHHHHHHHHHcCCCCCCccHHHHHHHHHhhCCCCCc
Q 027239 42 FSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTNKKE-SLFADRVFDLFDTKHNGILDFEEFARALSIFHPNSPI 120 (226)
Q Consensus 42 ~s~~~i~~l~~~F~~~D~~~~~~G~i~~~ef~~~l~~~~~~~-~~~~~~lf~~~d~~~~g~i~~~eF~~~~~~~~~~~~~ 120 (226)
++..++..++.+|..+|.+ ++|+|+..++..++..++..+ ...+..++..+|.+++|.|++++|+.++.........
T Consensus 2 ~~~~~~~el~~~F~~fD~d--~~G~i~~~el~~~lr~lg~~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~ 79 (151)
T KOG0027|consen 2 LSEEQILELKEAFQLFDKD--GDGKISVEELGAVLRSLGQNPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTD 79 (151)
T ss_pred CCHHHHHHHHHHHHHHCCC--CCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhccccc
Confidence 5778899999999999999 999999999999998887664 5568899999999999999999999999876543333
Q ss_pred ----HHHHHHHHHHhcCCCCCceeHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHh
Q 027239 121 ----DDKIEFSFQLYDLKQQGFIERQEVKQMVVATLTESGMNLSDDVIESIIDKTFEEADTKHDGKIDKEEWRNLVLR 194 (226)
Q Consensus 121 ----~~~~~~~F~~~D~d~~G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~dG~Is~~eF~~~~~~ 194 (226)
.+.++.+|+.||.+|+|+|+.+||++++..+ |.+.+.++++.++ +.+|.|+||.|+|++|.+++..
T Consensus 80 ~~~~~~el~eaF~~fD~d~~G~Is~~el~~~l~~l----g~~~~~~e~~~mi----~~~d~d~dg~i~f~ef~~~m~~ 149 (151)
T KOG0027|consen 80 EEASSEELKEAFRVFDKDGDGFISASELKKVLTSL----GEKLTDEECKEMI----REVDVDGDGKVNFEEFVKMMSG 149 (151)
T ss_pred ccccHHHHHHHHHHHccCCCCcCcHHHHHHHHHHh----CCcCCHHHHHHHH----HhcCCCCCCeEeHHHHHHHHhc
Confidence 4489999999999999999999999996665 9999999988888 8999999999999999999875
No 5
>PTZ00183 centrin; Provisional
Probab=99.87 E-value=1.7e-20 Score=141.59 Aligned_cols=149 Identities=21% Similarity=0.352 Sum_probs=130.0
Q ss_pred hcCCCHHHHHHHHHHHHhhcccCCCCCCccHHHHHHHHhccCC-cchHHHHHHHHHHcCCCCCCccHHHHHHHHHhhCCC
Q 027239 39 ETVFSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTNK-KESLFADRVFDLFDTKHNGILDFEEFARALSIFHPN 117 (226)
Q Consensus 39 ~~~~s~~~i~~l~~~F~~~D~~~~~~G~i~~~ef~~~l~~~~~-~~~~~~~~lf~~~d~~~~g~i~~~eF~~~~~~~~~~ 117 (226)
-..+++.+++.+...|..+|.+ ++|+|+.++|..++...+. .....+..++..+|.+++|.|+|+||+.++......
T Consensus 8 ~~~~~~~~~~~~~~~F~~~D~~--~~G~i~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~ 85 (158)
T PTZ00183 8 RPGLTEDQKKEIREAFDLFDTD--GSGTIDPKELKVAMRSLGFEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKKLGE 85 (158)
T ss_pred cCCCCHHHHHHHHHHHHHhCCC--CCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHhcC
Confidence 3568999999999999999999 9999999999999876653 345568899999999999999999999988765444
Q ss_pred CCcHHHHHHHHHHhcCCCCCceeHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhChh
Q 027239 118 SPIDDKIEFSFQLYDLKQQGFIERQEVKQMVVATLTESGMNLSDDVIESIIDKTFEEADTKHDGKIDKEEWRNLVLRHPS 197 (226)
Q Consensus 118 ~~~~~~~~~~F~~~D~d~~G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~dG~Is~~eF~~~~~~~~~ 197 (226)
....+.++.+|+.+|.+++|.|+.+||..++..+ |..+++.++..++ ..+|.+++|.|+|++|..++...|.
T Consensus 86 ~~~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~----~~~l~~~~~~~~~----~~~d~~~~g~i~~~ef~~~~~~~~~ 157 (158)
T PTZ00183 86 RDPREEILKAFRLFDDDKTGKISLKNLKRVAKEL----GETITDEELQEMI----DEADRNGDGEISEEEFYRIMKKTNL 157 (158)
T ss_pred CCcHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHh----CCCCCHHHHHHHH----HHhCCCCCCcCcHHHHHHHHhcccC
Confidence 5667889999999999999999999999996554 8889998877666 8999999999999999999998774
No 6
>PTZ00184 calmodulin; Provisional
Probab=99.85 E-value=1.8e-19 Score=134.43 Aligned_cols=144 Identities=23% Similarity=0.444 Sum_probs=124.9
Q ss_pred CCCHHHHHHHHHHHHhhcccCCCCCCccHHHHHHHHhccCC-cchHHHHHHHHHHcCCCCCCccHHHHHHHHHhhCCCCC
Q 027239 41 VFSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTNK-KESLFADRVFDLFDTKHNGILDFEEFARALSIFHPNSP 119 (226)
Q Consensus 41 ~~s~~~i~~l~~~F~~~D~~~~~~G~i~~~ef~~~l~~~~~-~~~~~~~~lf~~~d~~~~g~i~~~eF~~~~~~~~~~~~ 119 (226)
.+++++++.++..|..+|.+ ++|.|+.++|..++...+. .....+..++..+|.+++|.|+|++|+..+........
T Consensus 4 ~~~~~~~~~~~~~F~~~D~~--~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~ 81 (149)
T PTZ00184 4 QLTEEQIAEFKEAFSLFDKD--GDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTLMARKMKDTD 81 (149)
T ss_pred ccCHHHHHHHHHHHHHHcCC--CCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhccCCc
Confidence 47889999999999999999 9999999999988865543 33556899999999999999999999999887654446
Q ss_pred cHHHHHHHHHHhcCCCCCceeHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHh
Q 027239 120 IDDKIEFSFQLYDLKQQGFIERQEVKQMVVATLTESGMNLSDDVIESIIDKTFEEADTKHDGKIDKEEWRNLVLR 194 (226)
Q Consensus 120 ~~~~~~~~F~~~D~d~~G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~dG~Is~~eF~~~~~~ 194 (226)
..+.+..+|+.+|.+++|.|+.++|..++..+ +..++.+++..++ ..+|.+++|.|+|+||+.++..
T Consensus 82 ~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~----~~~~~~~~~~~~~----~~~d~~~~g~i~~~ef~~~~~~ 148 (149)
T PTZ00184 82 SEEEIKEAFKVFDRDGNGFISAAELRHVMTNL----GEKLTDEEVDEMI----READVDGDGQINYEEFVKMMMS 148 (149)
T ss_pred HHHHHHHHHHhhCCCCCCeEeHHHHHHHHHHH----CCCCCHHHHHHHH----HhcCCCCCCcCcHHHHHHHHhc
Confidence 67789999999999999999999999997664 8888888877666 7899999999999999988753
No 7
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=99.82 E-value=2.5e-19 Score=128.37 Aligned_cols=178 Identities=25% Similarity=0.447 Sum_probs=150.3
Q ss_pred hhccccccccCCCCCCCHHHHHhhcCCCHHHHHHHHHHHHhhcccCC----CC-----CCccHHHHHHHHhccCCcchHH
Q 027239 16 VNCCDADLYKQPRGLEDPEALARETVFSVSEIEALYELFKKISSAVI----DD-----GLINKEEFQLALFKTNKKESLF 86 (226)
Q Consensus 16 mg~~~s~~~~~~~~~~~~~~~~~~~~~s~~~i~~l~~~F~~~D~~~~----~~-----G~i~~~ef~~~l~~~~~~~~~~ 86 (226)
||+++...+. +++..+++-+.|+.++|-+++..|..+.++-+ .. -+++.+.+. .......+++
T Consensus 1 MGNK~~vFT~-----eqLd~YQDCTFFtrKdIlrl~~Rf~~L~P~lVP~~~~~~~~~~v~vp~e~i~---kMPELkenpf 72 (189)
T KOG0038|consen 1 MGNKQTVFTE-----EQLDEYQDCTFFTRKDILRLHKRFYELAPHLVPTDMTGNRPPIVKVPFELIE---KMPELKENPF 72 (189)
T ss_pred CCCccceeeH-----HHHhhhcccccccHHHHHHHHHHHHHhCcccccccccCCCCCceeecHHHHh---hChhhhcChH
Confidence 7877766655 89999999999999999999999999987511 01 123444333 2344556778
Q ss_pred HHHHHHHHcCCCCCCccHHHHHHHHHhhCCCCCcHHHHHHHHHHhcCCCCCceeHHHHHHHHHHHHhhcCCCCCHHHHHH
Q 027239 87 ADRVFDLFDTKHNGILDFEEFARALSIFHPNSPIDDKIEFSFQLYDLKQQGFIERQEVKQMVVATLTESGMNLSDDVIES 166 (226)
Q Consensus 87 ~~~lf~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~ 166 (226)
-+++...|..|+.|.++|++|+..++.++...+..-++..+|++||-|+++.|-.+++.+.+..+ ....+++++++-
T Consensus 73 k~ri~e~FSeDG~GnlsfddFlDmfSV~sE~APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~l---Tr~eLs~eEv~~ 149 (189)
T KOG0038|consen 73 KRRICEVFSEDGRGNLSFDDFLDMFSVFSEMAPRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTSL---TRDELSDEEVEL 149 (189)
T ss_pred HHHHHHHhccCCCCcccHHHHHHHHHHHHhhChHHhhhhheeEEeecCCCCcccHHHHHHHHHHH---hhccCCHHHHHH
Confidence 89999999999999999999999999988877888889999999999999999999999998765 456799999999
Q ss_pred HHHHHHHHhCCCCCCcccHHHHHHHHHhChhhhhhhhc
Q 027239 167 IIDKTFEEADTKHDGKIDKEEWRNLVLRHPSLLKNMTL 204 (226)
Q Consensus 167 ~~~~~f~~~d~~~dG~Is~~eF~~~~~~~~~l~~~~~~ 204 (226)
++..+.++.|.|+||++++.||..++.+.|+.+..+.+
T Consensus 150 i~ekvieEAD~DgDgkl~~~eFe~~i~raPDFlsTFHI 187 (189)
T KOG0038|consen 150 ICEKVIEEADLDGDGKLSFAEFEHVILRAPDFLSTFHI 187 (189)
T ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHhCcchHhhhee
Confidence 99999999999999999999999999999999876654
No 8
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=99.81 E-value=2.1e-18 Score=125.65 Aligned_cols=147 Identities=22% Similarity=0.399 Sum_probs=131.5
Q ss_pred hhcCCCHHHHHHHHHHHHhhcccCCCCCCccHHHHHHHHhccCCcc-hHHHHHHHHHHcCCCCCCccHHHHHHHHHhhCC
Q 027239 38 RETVFSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTNKKE-SLFADRVFDLFDTKHNGILDFEEFARALSIFHP 116 (226)
Q Consensus 38 ~~~~~s~~~i~~l~~~F~~~D~~~~~~G~i~~~ef~~~l~~~~~~~-~~~~~~lf~~~d~~~~g~i~~~eF~~~~~~~~~ 116 (226)
..+.+++++-+.++..|..+|.+ ++|+|+.++|..+++..+..+ ...+.++...+|++++|.|+|++|+..+.....
T Consensus 23 ~~~~l~~~q~q~i~e~f~lfd~~--~~g~iD~~EL~vAmralGFE~~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~k~~ 100 (172)
T KOG0028|consen 23 PKSELTEEQKQEIKEAFELFDPD--MAGKIDVEELKVAMRALGFEPKKEEILKLLADVDKEGSGKITFEDFRRVMTVKLG 100 (172)
T ss_pred CCccccHHHHhhHHHHHHhhccC--CCCcccHHHHHHHHHHcCCCcchHHHHHHHHhhhhccCceechHHHHHHHHHHHh
Confidence 34567788888999999999999 999999999988888888654 556788999999999999999999999887665
Q ss_pred CCCcHHHHHHHHHHhcCCCCCceeHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHh
Q 027239 117 NSPIDDKIEFSFQLYDLKQQGFIERQEVKQMVVATLTESGMNLSDDVIESIIDKTFEEADTKHDGKIDKEEWRNLVLR 194 (226)
Q Consensus 117 ~~~~~~~~~~~F~~~D~d~~G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~dG~Is~~eF~~~~~~ 194 (226)
..+..+.+..+|+++|.|++|.|+..+|+.+++.+ |+.++++++.+++ ..+|.+++|.|+-+||..+|..
T Consensus 101 e~dt~eEi~~afrl~D~D~~Gkis~~~lkrvakeL----genltD~El~eMI----eEAd~d~dgevneeEF~~imk~ 170 (172)
T KOG0028|consen 101 ERDTKEEIKKAFRLFDDDKTGKISQRNLKRVAKEL----GENLTDEELMEMI----EEADRDGDGEVNEEEFIRIMKK 170 (172)
T ss_pred ccCcHHHHHHHHHcccccCCCCcCHHHHHHHHHHh----CccccHHHHHHHH----HHhcccccccccHHHHHHHHhc
Confidence 56789999999999999999999999999996655 9999999999999 8999999999999999999875
No 9
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.78 E-value=3.2e-17 Score=118.65 Aligned_cols=141 Identities=19% Similarity=0.349 Sum_probs=124.5
Q ss_pred cCCCHHHHHHHHHHHHhhcccCCCCCCccHHHHHHHHhccCCc-chHHHHHHHHHHcCCCCCCccHHHHHHHHHhhCCCC
Q 027239 40 TVFSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTNKK-ESLFADRVFDLFDTKHNGILDFEEFARALSIFHPNS 118 (226)
Q Consensus 40 ~~~s~~~i~~l~~~F~~~D~~~~~~G~i~~~ef~~~l~~~~~~-~~~~~~~lf~~~d~~~~g~i~~~eF~~~~~~~~~~~ 118 (226)
.-|++.||+++++.|..+|.| ++|.|++++++..+.+++.. .+..+..++.. .+|.|+|.-|+..+.......
T Consensus 24 amf~q~QIqEfKEAF~~mDqn--rDG~IdkeDL~d~~aSlGk~~~d~elDaM~~E----a~gPINft~FLTmfGekL~gt 97 (171)
T KOG0031|consen 24 AMFDQSQIQEFKEAFNLMDQN--RDGFIDKEDLRDMLASLGKIASDEELDAMMKE----APGPINFTVFLTMFGEKLNGT 97 (171)
T ss_pred HHhhHHHHHHHHHHHHHHhcc--CCCcccHHHHHHHHHHcCCCCCHHHHHHHHHh----CCCCeeHHHHHHHHHHHhcCC
Confidence 467899999999999999999 99999999999999887755 35556666665 678999999999998877778
Q ss_pred CcHHHHHHHHHHhcCCCCCceeHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHh
Q 027239 119 PIDDKIEFSFQLYDLKQQGFIERQEVKQMVVATLTESGMNLSDDVIESIIDKTFEEADTKHDGKIDKEEWRNLVLR 194 (226)
Q Consensus 119 ~~~~~~~~~F~~~D~d~~G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~dG~Is~~eF~~~~~~ 194 (226)
+.++.+..+|+.||.++.|.|..+.++.+|.. .|..+++++++.++ +.+-.+..|.++|..|...+..
T Consensus 98 dpe~~I~~AF~~FD~~~~G~I~~d~lre~Ltt----~gDr~~~eEV~~m~----r~~p~d~~G~~dy~~~~~~ith 165 (171)
T KOG0031|consen 98 DPEEVILNAFKTFDDEGSGKIDEDYLRELLTT----MGDRFTDEEVDEMY----REAPIDKKGNFDYKAFTYIITH 165 (171)
T ss_pred CHHHHHHHHHHhcCccCCCccCHHHHHHHHHH----hcccCCHHHHHHHH----HhCCcccCCceeHHHHHHHHHc
Confidence 89999999999999999999999999999644 59999999988777 7888999999999999998874
No 10
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.72 E-value=2.5e-16 Score=112.16 Aligned_cols=142 Identities=18% Similarity=0.303 Sum_probs=119.4
Q ss_pred CCCHHHHHHHHHHHHhhcccCCCCCCccHHHHHHHHhccCCcc-hHHHHHHHHHHcCC--CCCCccHHHHHHHHHhhCCC
Q 027239 41 VFSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTNKKE-SLFADRVFDLFDTK--HNGILDFEEFARALSIFHPN 117 (226)
Q Consensus 41 ~~s~~~i~~l~~~F~~~D~~~~~~G~i~~~ef~~~l~~~~~~~-~~~~~~lf~~~d~~--~~g~i~~~eF~~~~~~~~~~ 117 (226)
.+++++..+++++|..+|.. ++|+|+..+..++|+..+..+ +..+.+....++++ +-..|+|++|+..+..+.+.
T Consensus 4 ~~~~d~~~e~ke~F~lfD~~--gD~ki~~~q~gdvlRalG~nPT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~vakn 81 (152)
T KOG0030|consen 4 AFTPDQMEEFKEAFLLFDRT--GDGKISGSQVGDVLRALGQNPTNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQVAKN 81 (152)
T ss_pred ccCcchHHHHHHHHHHHhcc--CcccccHHHHHHHHHHhcCCCcHHHHHHHHcCcccchhhhhhhhHHHHHHHHHHHHhc
Confidence 45677889999999999999 999999999999999988655 55666777777666 34679999999998876542
Q ss_pred --CCcHHHHHHHHHHhcCCCCCceeHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHH
Q 027239 118 --SPIDDKIEFSFQLYDLKQQGFIERQEVKQMVVATLTESGMNLSDDVIESIIDKTFEEADTKHDGKIDKEEWRNLVL 193 (226)
Q Consensus 118 --~~~~~~~~~~F~~~D~d~~G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~dG~Is~~eF~~~~~ 193 (226)
...-+.....++.||++|+|.|...|+++++.++ |..+++++++.++ .--.|.+|.|.|+.|++.+.
T Consensus 82 k~q~t~edfvegLrvFDkeg~G~i~~aeLRhvLttl----Gekl~eeEVe~Ll-----ag~eD~nG~i~YE~fVk~i~ 150 (152)
T KOG0030|consen 82 KDQGTYEDFVEGLRVFDKEGNGTIMGAELRHVLTTL----GEKLTEEEVEELL-----AGQEDSNGCINYEAFVKHIM 150 (152)
T ss_pred cccCcHHHHHHHHHhhcccCCcceeHHHHHHHHHHH----HhhccHHHHHHHH-----ccccccCCcCcHHHHHHHHh
Confidence 2345678889999999999999999999997665 9999999999999 55568899999999998765
No 11
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=99.71 E-value=2.7e-16 Score=120.56 Aligned_cols=158 Identities=20% Similarity=0.317 Sum_probs=129.1
Q ss_pred HHHHHHHHHhhcccCCCCCCccHHHHHHHHhccCC--cchHHHHHHHHHHcCCCCCCccHHHHHHHHHhhCCCCCcHHHH
Q 027239 47 IEALYELFKKISSAVIDDGLINKEEFQLALFKTNK--KESLFADRVFDLFDTKHNGILDFEEFARALSIFHPNSPIDDKI 124 (226)
Q Consensus 47 i~~l~~~F~~~D~~~~~~G~i~~~ef~~~l~~~~~--~~~~~~~~lf~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~~ 124 (226)
-..+...|...|++ ++|+|+.+|+..+|-.... -....++.+..+||.+.+|+|+|.||...+..+. .+
T Consensus 56 ~~~~~~~f~~vD~d--~sg~i~~~eLq~aLsn~~~~~Fs~~TcrlmI~mfd~~~~G~i~f~EF~~Lw~~i~-------~W 126 (221)
T KOG0037|consen 56 FPQLAGWFQSVDRD--RSGRILAKELQQALSNGTWSPFSIETCRLMISMFDRDNSGTIGFKEFKALWKYIN-------QW 126 (221)
T ss_pred cHHHHHHHHhhCcc--ccccccHHHHHHHhhcCCCCCCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHHHH-------HH
Confidence 45789999999999 9999999999998853332 2344578899999999999999999999996554 49
Q ss_pred HHHHHHhcCCCCCceeHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhChhhhhhh--
Q 027239 125 EFSFQLYDLKQQGFIERQEVKQMVVATLTESGMNLSDDVIESIIDKTFEEADTKHDGKIDKEEWRNLVLRHPSLLKNM-- 202 (226)
Q Consensus 125 ~~~F~~~D~d~~G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~dG~Is~~eF~~~~~~~~~l~~~~-- 202 (226)
+.+|+.||.|++|.|+..||++++.. +|..++++-.+.++ ..+|..++|.|.|++|+.+|...+.+-+.+
T Consensus 127 r~vF~~~D~D~SG~I~~sEL~~Al~~----~Gy~Lspq~~~~lv----~kyd~~~~g~i~FD~FI~ccv~L~~lt~~Fr~ 198 (221)
T KOG0037|consen 127 RNVFRTYDRDRSGTIDSSELRQALTQ----LGYRLSPQFYNLLV----RKYDRFGGGRIDFDDFIQCCVVLQRLTEAFRR 198 (221)
T ss_pred HHHHHhcccCCCCcccHHHHHHHHHH----cCcCCCHHHHHHHH----HHhccccCCceeHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999555 59999998877666 789877799999999999998877666654
Q ss_pred -hcccccccccccccccccc
Q 027239 203 -TLQYLKDITTTFPSFVFHS 221 (226)
Q Consensus 203 -~~~~~~~~~~~~~~~~~~~ 221 (226)
-......++..|..|+.++
T Consensus 199 ~D~~q~G~i~~~y~dfl~~t 218 (221)
T KOG0037|consen 199 RDTAQQGSITISYDDFLQMT 218 (221)
T ss_pred hccccceeEEEeHHHHHHHh
Confidence 2333444556667777654
No 12
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=99.63 E-value=1.2e-14 Score=120.64 Aligned_cols=139 Identities=27% Similarity=0.426 Sum_probs=121.8
Q ss_pred CCHHHHHHHHHHHHhhcccCCCCCCccHHHHHHHHhccCCc--chHHHHHHHHHHcCCCCCCccHHHHHHHHHhhCCCCC
Q 027239 42 FSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTNKK--ESLFADRVFDLFDTKHNGILDFEEFARALSIFHPNSP 119 (226)
Q Consensus 42 ~s~~~i~~l~~~F~~~D~~~~~~G~i~~~ef~~~l~~~~~~--~~~~~~~lf~~~d~~~~g~i~~~eF~~~~~~~~~~~~ 119 (226)
..++.-.+++.+|+.+|.+ ++|.++..++...+..+... ....+..+|+..|.|.+|.++|+||...+. .
T Consensus 8 ~~~er~~r~~~lf~~lD~~--~~g~~d~~~l~k~~~~l~~~~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~------~ 79 (463)
T KOG0036|consen 8 TDEERDIRIRCLFKELDSK--NDGQVDLDQLEKGLEKLDHPKPNYEAAKMLFSAMDANRDGRVDYSEFKRYLD------N 79 (463)
T ss_pred CcHHHHHHHHHHHHHhccC--CCCceeHHHHHHHHHhcCCCCCchHHHHHHHHhcccCcCCcccHHHHHHHHH------H
Confidence 3455667899999999999 99999999999888665433 345678899999999999999999999994 6
Q ss_pred cHHHHHHHHHHhcCCCCCceeHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhCh
Q 027239 120 IDDKIEFSFQLYDLKQQGFIERQEVKQMVVATLTESGMNLSDDVIESIIDKTFEEADTKHDGKIDKEEWRNLVLRHP 196 (226)
Q Consensus 120 ~~~~~~~~F~~~D~d~~G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~dG~Is~~eF~~~~~~~~ 196 (226)
.+.++..+|+.+|.++||.|..+|+.+.++. +|.++++++++.++ +.+|.++++.|+++||..++..+|
T Consensus 80 ~E~~l~~~F~~iD~~hdG~i~~~Ei~~~l~~----~gi~l~de~~~k~~----e~~d~~g~~~I~~~e~rd~~ll~p 148 (463)
T KOG0036|consen 80 KELELYRIFQSIDLEHDGKIDPNEIWRYLKD----LGIQLSDEKAAKFF----EHMDKDGKATIDLEEWRDHLLLYP 148 (463)
T ss_pred hHHHHHHHHhhhccccCCccCHHHHHHHHHH----hCCccCHHHHHHHH----HHhccCCCeeeccHHHHhhhhcCC
Confidence 6777999999999999999999999999555 49999999987766 899999999999999999999887
No 13
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.43 E-value=9.4e-13 Score=84.69 Aligned_cols=66 Identities=29% Similarity=0.615 Sum_probs=60.4
Q ss_pred HHHHHHHHhcCCCCCceeHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHH
Q 027239 123 KIEFSFQLYDLKQQGFIERQEVKQMVVATLTESGMNLSDDVIESIIDKTFEEADTKHDGKIDKEEWRNLV 192 (226)
Q Consensus 123 ~~~~~F~~~D~d~~G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~dG~Is~~eF~~~~ 192 (226)
+++.+|+.+|.+++|+|+.+||..++..+ +...++...++.+..+|+.+|.|++|.|+++||+.++
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~----~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKHL----GRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHT----TSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHHh----cccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 47899999999999999999999997665 7777788999999999999999999999999999875
No 14
>PLN02964 phosphatidylserine decarboxylase
Probab=99.40 E-value=4.8e-12 Score=113.34 Aligned_cols=113 Identities=19% Similarity=0.297 Sum_probs=96.3
Q ss_pred CCHHHHHhh--cCCCHHHHHHHHHHHHhhcccCCCCCCccHHHHHHHHhccC-Ccc-h---HHHHHHHHHHcCCCCCCcc
Q 027239 31 EDPEALARE--TVFSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTN-KKE-S---LFADRVFDLFDTKHNGILD 103 (226)
Q Consensus 31 ~~~~~~~~~--~~~s~~~i~~l~~~F~~~D~~~~~~G~i~~~ef~~~l~~~~-~~~-~---~~~~~lf~~~d~~~~g~i~ 103 (226)
+++..+.+. +.|+.+|+.++++.|+.+|++ ++|++ +..++...+ ..+ + .+++++|..+|.+++|.|+
T Consensus 124 n~lv~~~e~~~t~f~~kqi~elkeaF~lfD~d--gdG~i----Lg~ilrslG~~~pte~e~~fi~~mf~~~D~DgdG~Id 197 (644)
T PLN02964 124 NTLVGYCELDLFDFVTQEPESACESFDLLDPS--SSNKV----VGSIFVSCSIEDPVETERSFARRILAIVDYDEDGQLS 197 (644)
T ss_pred HHhhhheeecHhhccHHHHHHHHHHHHHHCCC--CCCcC----HHHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCCCeEc
Confidence 667777777 899999999999999999999 99997 555555555 222 2 2478999999999999999
Q ss_pred HHHHHHHHHhhCCCCCcHHHHHHHHHHhcCCCCCceeHHHHHHHHHH
Q 027239 104 FEEFARALSIFHPNSPIDDKIEFSFQLYDLKQQGFIERQEVKQMVVA 150 (226)
Q Consensus 104 ~~eF~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~I~~~e~~~~l~~ 150 (226)
++||+.++..+.. ...++++..+|+.||.|++|.|+.+||..++..
T Consensus 198 fdEFl~lL~~lg~-~~seEEL~eaFk~fDkDgdG~Is~dEL~~vL~~ 243 (644)
T PLN02964 198 FSEFSDLIKAFGN-LVAANKKEELFKAADLNGDGVVTIDELAALLAL 243 (644)
T ss_pred HHHHHHHHHHhcc-CCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHh
Confidence 9999999987764 467888999999999999999999999999876
No 15
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.30 E-value=5.2e-11 Score=89.35 Aligned_cols=104 Identities=21% Similarity=0.334 Sum_probs=86.8
Q ss_pred HHHHHHHHHcCCCCCCccHHHHHHHHHhhCCCCCcHHHHHHHHHHhcCCCCCceeHHHHHHHHHHHHhhcCCC-CCHHHH
Q 027239 86 FADRVFDLFDTKHNGILDFEEFARALSIFHPNSPIDDKIEFSFQLYDLKQQGFIERQEVKQMVVATLTESGMN-LSDDVI 164 (226)
Q Consensus 86 ~~~~lf~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~I~~~e~~~~l~~~~~~~~~~-~~~~~~ 164 (226)
....+|+.+|.+++|.|+-.|+-.++..+.. .+.+..+..+++.+|.+|+|.|+.++|..++.......... .+.++
T Consensus 9 el~~~F~~fD~d~~G~i~~~el~~~lr~lg~-~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~~~~~e- 86 (151)
T KOG0027|consen 9 ELKEAFQLFDKDGDGKISVEELGAVLRSLGQ-NPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDEEASSEE- 86 (151)
T ss_pred HHHHHHHHHCCCCCCcccHHHHHHHHHHcCC-CCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhcccccccccHHH-
Confidence 3588999999999999999999999999888 47888899999999999999999999999976552211111 12223
Q ss_pred HHHHHHHHHHhCCCCCCcccHHHHHHHHHh
Q 027239 165 ESIIDKTFEEADTKHDGKIDKEEWRNLVLR 194 (226)
Q Consensus 165 ~~~~~~~f~~~d~~~dG~Is~~eF~~~~~~ 194 (226)
+..+|..+|.|++|.|+..|+..++..
T Consensus 87 ---l~eaF~~fD~d~~G~Is~~el~~~l~~ 113 (151)
T KOG0027|consen 87 ---LKEAFRVFDKDGDGFISASELKKVLTS 113 (151)
T ss_pred ---HHHHHHHHccCCCCcCcHHHHHHHHHH
Confidence 556779999999999999999999986
No 16
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.28 E-value=3.1e-11 Score=97.96 Aligned_cols=137 Identities=23% Similarity=0.316 Sum_probs=103.7
Q ss_pred HHHHHHHHHHHHhhcccCCCCCCccHHHHHHHHhccCC--cchHHHHHHHHHHcCCCCCCccHHHHHHHHHhhCCCCCc-
Q 027239 44 VSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTNK--KESLFADRVFDLFDTKHNGILDFEEFARALSIFHPNSPI- 120 (226)
Q Consensus 44 ~~~i~~l~~~F~~~D~~~~~~G~i~~~ef~~~l~~~~~--~~~~~~~~lf~~~d~~~~g~i~~~eF~~~~~~~~~~~~~- 120 (226)
.+.+.+-.+.|+..|.| ++|.++.+||...|..... .....+..-+.-.|+|++|.|+++||+.-+.........
T Consensus 159 ~km~~rDe~rFk~AD~d--~dg~lt~EEF~aFLHPEe~p~M~~iVi~Etl~d~Dkn~DG~I~~eEfigd~~~~~~~~~ep 236 (325)
T KOG4223|consen 159 KKMIARDEERFKAADQD--GDGSLTLEEFTAFLHPEEHPHMKDIVIAETLEDIDKNGDGKISLEEFIGDLYSHEGNEEEP 236 (325)
T ss_pred HHHHHHHHHHHhhcccC--CCCcccHHHHHhccChhhcchHHHHHHHHHHhhcccCCCCceeHHHHHhHHhhccCCCCCc
Confidence 44578889999999999 9999999999976633221 123346667788899999999999999988765532111
Q ss_pred ---HHHHHHHHHHhcCCCCCceeHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHH
Q 027239 121 ---DDKIEFSFQLYDLKQQGFIERQEVKQMVVATLTESGMNLSDDVIESIIDKTFEEADTKHDGKIDKEEWRN 190 (226)
Q Consensus 121 ---~~~~~~~F~~~D~d~~G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~dG~Is~~eF~~ 190 (226)
...-...+..+|+|++|+++.+|+.+.+.- .+......++..++ ...|.|+||++|++|.+.
T Consensus 237 eWv~~Ere~F~~~~DknkDG~L~~dEl~~WI~P----~~~d~A~~EA~hL~----~eaD~dkD~kLs~eEIl~ 301 (325)
T KOG4223|consen 237 EWVLTEREQFFEFRDKNKDGKLDGDELLDWILP----SEQDHAKAEARHLL----HEADEDKDGKLSKEEILE 301 (325)
T ss_pred ccccccHHHHHHHhhcCCCCccCHHHHhcccCC----CCccHHHHHHHHHh----hhhccCccccccHHHHhh
Confidence 122346677889999999999999987421 25556666766666 899999999999999653
No 17
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=99.27 E-value=7.6e-11 Score=99.03 Aligned_cols=137 Identities=19% Similarity=0.221 Sum_probs=107.9
Q ss_pred HHHHHHHhhcccCCCCCCccHHHHHHHHhc---cCCcchHHHHHHHHHHcCCCCCCccHHHHHHHHHhhCCCC-------
Q 027239 49 ALYELFKKISSAVIDDGLINKEEFQLALFK---TNKKESLFADRVFDLFDTKHNGILDFEEFARALSIFHPNS------- 118 (226)
Q Consensus 49 ~l~~~F~~~D~~~~~~G~i~~~ef~~~l~~---~~~~~~~~~~~lf~~~d~~~~g~i~~~eF~~~~~~~~~~~------- 118 (226)
.|.+.|..+|.+ ++|+|+..++..++.. ++.++..+.. +....+.+|.|.|.+.+..+..-....
T Consensus 465 dL~~eF~~~D~~--ksG~lsis~Wa~~mE~i~~L~LPWr~L~~---kla~~s~d~~v~Y~~~~~~l~~e~~~~ea~~slv 539 (631)
T KOG0377|consen 465 DLEDEFRKYDPK--KSGKLSISHWAKCMENITGLNLPWRLLRP---KLANGSDDGKVEYKSTLDNLDTEVILEEAGSSLV 539 (631)
T ss_pred HHHHHHHhcChh--hcCeeeHHHHHHHHHHHhcCCCcHHHhhh---hccCCCcCcceehHhHHHHhhhhhHHHHHHhHHH
Confidence 467889999999 9999999999988755 3344433322 334455678888888776654321100
Q ss_pred ----CcHHHHHHHHHHhcCCCCCceeHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHh
Q 027239 119 ----PIDDKIEFSFQLYDLKQQGFIERQEVKQMVVATLTESGMNLSDDVIESIIDKTFEEADTKHDGKIDKEEWRNLVLR 194 (226)
Q Consensus 119 ----~~~~~~~~~F~~~D~d~~G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~dG~Is~~eF~~~~~~ 194 (226)
-.+..+..+|+.+|+|++|.|+.+||+.+++-+...++.+++++++.++. ..+|-|+||+|+++||+.+.+-
T Consensus 540 etLYr~ks~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la----~~mD~NkDG~IDlNEfLeAFrl 615 (631)
T KOG0377|consen 540 ETLYRNKSSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELA----RSMDLNKDGKIDLNEFLEAFRL 615 (631)
T ss_pred HHHHhchhhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHH----HhhccCCCCcccHHHHHHHHhh
Confidence 12345888999999999999999999999999888899999999998888 7999999999999999998864
No 18
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=99.26 E-value=1.5e-10 Score=89.08 Aligned_cols=130 Identities=21% Similarity=0.305 Sum_probs=106.6
Q ss_pred hcCCCHHHHHHHHHHHHhhcccCCCCCCccHHHHHHHHhccCCcchHHHHHHHHHHcCCCCCCccHHHHHHHHHhhCCCC
Q 027239 39 ETVFSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTNKKESLFADRVFDLFDTKHNGILDFEEFARALSIFHPNS 118 (226)
Q Consensus 39 ~~~~s~~~i~~l~~~F~~~D~~~~~~G~i~~~ef~~~l~~~~~~~~~~~~~lf~~~d~~~~g~i~~~eF~~~~~~~~~~~ 118 (226)
-+.|+.+-++-+..+| |.+ ++|+|..+||..+- ... ..++.+|..+|.|++|+|+..|+..++..+.. .
T Consensus 88 ~~~Fs~~TcrlmI~mf---d~~--~~G~i~f~EF~~Lw-~~i----~~Wr~vF~~~D~D~SG~I~~sEL~~Al~~~Gy-~ 156 (221)
T KOG0037|consen 88 WSPFSIETCRLMISMF---DRD--NSGTIGFKEFKALW-KYI----NQWRNVFRTYDRDRSGTIDSSELRQALTQLGY-R 156 (221)
T ss_pred CCCCCHHHHHHHHHHh---cCC--CCCccCHHHHHHHH-HHH----HHHHHHHHhcccCCCCcccHHHHHHHHHHcCc-C
Confidence 4678888877777776 455 99999999999543 322 23589999999999999999999999999998 4
Q ss_pred CcHHHHHHHHHHhcCCCCCceeHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhCCCCCCc--ccHHHHHHHHH
Q 027239 119 PIDDKIEFSFQLYDLKQQGFIERQEVKQMVVATLTESGMNLSDDVIESIIDKTFEEADTKHDGK--IDKEEWRNLVL 193 (226)
Q Consensus 119 ~~~~~~~~~F~~~D~d~~G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~dG~--Is~~eF~~~~~ 193 (226)
...+-+..+++.||..++|.|..++|.+++..+ ..+..+|...|.+.+|. |+|++|+.+..
T Consensus 157 Lspq~~~~lv~kyd~~~~g~i~FD~FI~ccv~L--------------~~lt~~Fr~~D~~q~G~i~~~y~dfl~~t~ 219 (221)
T KOG0037|consen 157 LSPQFYNLLVRKYDRFGGGRIDFDDFIQCCVVL--------------QRLTEAFRRRDTAQQGSITISYDDFLQMTM 219 (221)
T ss_pred CCHHHHHHHHHHhccccCCceeHHHHHHHHHHH--------------HHHHHHHHHhccccceeEEEeHHHHHHHhh
Confidence 778889999999999889999999999986544 22456778999999884 79999987653
No 19
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=99.20 E-value=8.2e-11 Score=79.85 Aligned_cols=67 Identities=16% Similarity=0.259 Sum_probs=57.3
Q ss_pred HHHHHHHHHhcC-CCCCceeHHHHHHHHHHHHhhcCCCCCH-HHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhC
Q 027239 122 DKIEFSFQLYDL-KQQGFIERQEVKQMVVATLTESGMNLSD-DVIESIIDKTFEEADTKHDGKIDKEEWRNLVLRH 195 (226)
Q Consensus 122 ~~~~~~F~~~D~-d~~G~I~~~e~~~~l~~~~~~~~~~~~~-~~~~~~~~~~f~~~d~~~dG~Is~~eF~~~~~~~ 195 (226)
..++.+|+.||+ +++|+|+.+||+.+++.- ++..+++ +++++++ ...|.|+||.|+|+||..++...
T Consensus 8 ~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~e---lg~~ls~~~~v~~mi----~~~D~d~DG~I~F~EF~~l~~~l 76 (89)
T cd05022 8 ETLVSNFHKASVKGGKESLTASEFQELLTQQ---LPHLLKDVEGLEEKM----KNLDVNQDSKLSFEEFWELIGEL 76 (89)
T ss_pred HHHHHHHHHHhCCCCCCeECHHHHHHHHHHH---hhhhccCHHHHHHHH----HHhCCCCCCCCcHHHHHHHHHHH
Confidence 458899999999 999999999999997661 3666777 7777777 89999999999999999998763
No 20
>PTZ00183 centrin; Provisional
Probab=99.16 E-value=1.1e-09 Score=82.28 Aligned_cols=100 Identities=25% Similarity=0.341 Sum_probs=82.2
Q ss_pred HHHHHHHHcCCCCCCccHHHHHHHHHhhCCCCCcHHHHHHHHHHhcCCCCCceeHHHHHHHHHHHHhhcCCCCCHHHHHH
Q 027239 87 ADRVFDLFDTKHNGILDFEEFARALSIFHPNSPIDDKIEFSFQLYDLKQQGFIERQEVKQMVVATLTESGMNLSDDVIES 166 (226)
Q Consensus 87 ~~~lf~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~ 166 (226)
+..+|..+|.+++|.|+++||..++..... ......+..+|+.+|.+++|.|+.+||..++.... ......+.
T Consensus 19 ~~~~F~~~D~~~~G~i~~~e~~~~l~~~g~-~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~---~~~~~~~~--- 91 (158)
T PTZ00183 19 IREAFDLFDTDGSGTIDPKELKVAMRSLGF-EPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKKL---GERDPREE--- 91 (158)
T ss_pred HHHHHHHhCCCCCCcccHHHHHHHHHHhCC-CCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHh---cCCCcHHH---
Confidence 577899999999999999999999987654 35567799999999999999999999999865431 22233333
Q ss_pred HHHHHHHHhCCCCCCcccHHHHHHHHHh
Q 027239 167 IIDKTFEEADTKHDGKIDKEEWRNLVLR 194 (226)
Q Consensus 167 ~~~~~f~~~d~~~dG~Is~~eF~~~~~~ 194 (226)
+..+|+.+|.+++|.|+.+||..++..
T Consensus 92 -l~~~F~~~D~~~~G~i~~~e~~~~l~~ 118 (158)
T PTZ00183 92 -ILKAFRLFDDDKTGKISLKNLKRVAKE 118 (158)
T ss_pred -HHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 566779999999999999999999874
No 21
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=99.16 E-value=3.1e-10 Score=96.01 Aligned_cols=146 Identities=18% Similarity=0.314 Sum_probs=118.1
Q ss_pred cCCCHHHHHHHHHHHHhhcccCCCCCCccHHHHHHHHhccCCcchHHHHHHHHHH----cCCCCCCccHHHHHHHHHhhC
Q 027239 40 TVFSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTNKKESLFADRVFDLF----DTKHNGILDFEEFARALSIFH 115 (226)
Q Consensus 40 ~~~s~~~i~~l~~~F~~~D~~~~~~G~i~~~ef~~~l~~~~~~~~~~~~~lf~~~----d~~~~g~i~~~eF~~~~~~~~ 115 (226)
..||.+.-..++..|..+|.+ ++|.|+.+++... +.+.-...+++|+|+.+ -...+|.++|++|+.++-...
T Consensus 270 ~~FS~e~f~viy~kFweLD~D--hd~lidk~~L~ry--~d~tlt~~ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA~e 345 (493)
T KOG2562|consen 270 RYFSYEHFYVIYCKFWELDTD--HDGLIDKEDLKRY--GDHTLTERIVDRIFSQVPRGFTVKVEGRMDYKDFVDFILAEE 345 (493)
T ss_pred hheeHHHHHHHHHHHhhhccc--cccccCHHHHHHH--hccchhhHHHHHHHhhccccceeeecCcccHHHHHHHHHHhc
Confidence 467888888999999999999 9999999999854 23333367789999933 344579999999999998876
Q ss_pred CCCCcHHHHHHHHHHhcCCCCCceeHHHHHHHHHHHHhhcCCC-CCHHHHHHHHHHHHHHhCCCCCCcccHHHHHH
Q 027239 116 PNSPIDDKIEFSFQLYDLKQQGFIERQEVKQMVVATLTESGMN-LSDDVIESIIDKTFEEADTKHDGKIDKEEWRN 190 (226)
Q Consensus 116 ~~~~~~~~~~~~F~~~D~d~~G~I~~~e~~~~l~~~~~~~~~~-~~~~~~~~~~~~~f~~~d~~~dG~Is~~eF~~ 190 (226)
. ....+.+...|+++|.+|+|.|+..|+.-+....++.+-.. ...-.++.++.++++.+.+...++|+.++|..
T Consensus 346 ~-k~t~~SleYwFrclDld~~G~Lt~~el~~fyeeq~~rm~~~~~e~l~fed~l~qi~DMvkP~~~~kItLqDlk~ 420 (493)
T KOG2562|consen 346 D-KDTPASLEYWFRCLDLDGDGILTLNELRYFYEEQLQRMECMGQEALPFEDALCQIRDMVKPEDENKITLQDLKG 420 (493)
T ss_pred c-CCCccchhhheeeeeccCCCcccHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHhCccCCCceeHHHHhh
Confidence 6 46677799999999999999999999999988877653322 22224677788888999988899999999987
No 22
>PTZ00184 calmodulin; Provisional
Probab=99.15 E-value=8.7e-10 Score=81.84 Aligned_cols=100 Identities=20% Similarity=0.323 Sum_probs=81.8
Q ss_pred HHHHHHHHcCCCCCCccHHHHHHHHHhhCCCCCcHHHHHHHHHHhcCCCCCceeHHHHHHHHHHHHhhcCCCCCHHHHHH
Q 027239 87 ADRVFDLFDTKHNGILDFEEFARALSIFHPNSPIDDKIEFSFQLYDLKQQGFIERQEVKQMVVATLTESGMNLSDDVIES 166 (226)
Q Consensus 87 ~~~lf~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~ 166 (226)
....|..+|.+++|.|+++||..++..... ....+.+..+|+.+|.+++|.|+.++|..++...+ ..... ..
T Consensus 13 ~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~-~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~---~~~~~----~~ 84 (149)
T PTZ00184 13 FKEAFSLFDKDGDGTITTKELGTVMRSLGQ-NPTEAELQDMINEVDADGNGTIDFPEFLTLMARKM---KDTDS----EE 84 (149)
T ss_pred HHHHHHHHcCCCCCcCCHHHHHHHHHHhCC-CCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhc---cCCcH----HH
Confidence 578899999999999999999999877654 35567899999999999999999999999875431 11122 23
Q ss_pred HHHHHHHHhCCCCCCcccHHHHHHHHHh
Q 027239 167 IIDKTFEEADTKHDGKIDKEEWRNLVLR 194 (226)
Q Consensus 167 ~~~~~f~~~d~~~dG~Is~~eF~~~~~~ 194 (226)
.+..+|..+|.+++|.|+.++|..++..
T Consensus 85 ~~~~~F~~~D~~~~g~i~~~e~~~~l~~ 112 (149)
T PTZ00184 85 EIKEAFKVFDRDGNGFISAAELRHVMTN 112 (149)
T ss_pred HHHHHHHhhCCCCCCeEeHHHHHHHHHH
Confidence 4567789999999999999999998864
No 23
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.13 E-value=5.2e-10 Score=90.88 Aligned_cols=142 Identities=26% Similarity=0.354 Sum_probs=105.3
Q ss_pred HHHHHHHHHHhhcccCCCCCCccHHHHHHHHhccCCc-chHHHHHHHHHHcCCCCCCccHHHHHHHHHhhC------CCC
Q 027239 46 EIEALYELFKKISSAVIDDGLINKEEFQLALFKTNKK-ESLFADRVFDLFDTKHNGILDFEEFARALSIFH------PNS 118 (226)
Q Consensus 46 ~i~~l~~~F~~~D~~~~~~G~i~~~ef~~~l~~~~~~-~~~~~~~lf~~~d~~~~g~i~~~eF~~~~~~~~------~~~ 118 (226)
.-.++..++.++|.+ ++|+|+..++..++...... ....+.+-+..+|.|.+|.|+|+|++....... ...
T Consensus 75 ~~~rl~~l~~~iD~~--~Dgfv~~~El~~wi~~s~k~~v~~~~~~~~~~~d~~~Dg~i~~eey~~~~~~~~~~~~~~~d~ 152 (325)
T KOG4223|consen 75 SQERLGKLVPKIDSD--SDGFVTESELKAWIMQSQKKYVVEEAARRWDEYDKNKDGFITWEEYLPQTYGRVDLPDEFPDE 152 (325)
T ss_pred hHHHHHHHHhhhcCC--CCCceeHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccceeeHHHhhhhhhhcccCccccccc
Confidence 346789999999988 99999999999887554322 222356678889999999999999998876431 000
Q ss_pred -Cc------HHHHHHHHHHhcCCCCCceeHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHH
Q 027239 119 -PI------DDKIEFSFQLYDLKQQGFIERQEVKQMVVATLTESGMNLSDDVIESIIDKTFEEADTKHDGKIDKEEWRNL 191 (226)
Q Consensus 119 -~~------~~~~~~~F~~~D~d~~G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~dG~Is~~eF~~~ 191 (226)
.. ..+-+.-|+.-|.|++|.+|++||..++ ..+-.+.+.+-.+.+-+ ...|.|+||+|+++||+.=
T Consensus 153 e~~~~~~km~~rDe~rFk~AD~d~dg~lt~EEF~aFL---HPEe~p~M~~iVi~Etl----~d~Dkn~DG~I~~eEfigd 225 (325)
T KOG4223|consen 153 EDNEEYKKMIARDEERFKAADQDGDGSLTLEEFTAFL---HPEEHPHMKDIVIAETL----EDIDKNGDGKISLEEFIGD 225 (325)
T ss_pred hhcHHHHHHHHHHHHHHhhcccCCCCcccHHHHHhcc---ChhhcchHHHHHHHHHH----hhcccCCCCceeHHHHHhH
Confidence 11 1124567999999999999999999985 33333445444444444 8999999999999999987
Q ss_pred HHhCh
Q 027239 192 VLRHP 196 (226)
Q Consensus 192 ~~~~~ 196 (226)
|...+
T Consensus 226 ~~~~~ 230 (325)
T KOG4223|consen 226 LYSHE 230 (325)
T ss_pred Hhhcc
Confidence 76654
No 24
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.11 E-value=6e-10 Score=85.84 Aligned_cols=130 Identities=18% Similarity=0.196 Sum_probs=95.6
Q ss_pred HHhhccccccccCCCCCCCHHHHHhhcCCCHHHHHHHHHHHHhhcccCCCCCCccHHHHHHHHhcc-CCcchHHHHHHHH
Q 027239 14 VVVNCCDADLYKQPRGLEDPEALARETVFSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKT-NKKESLFADRVFD 92 (226)
Q Consensus 14 ~~mg~~~s~~~~~~~~~~~~~~~~~~~~~s~~~i~~l~~~F~~~D~~~~~~G~i~~~ef~~~l~~~-~~~~~~~~~~lf~ 92 (226)
.++..|.+..-. .++.+.+-......-..-.....+|..+|.+ ++|.|+..||..+|... ....+...+=.|+
T Consensus 34 ~Fk~~cP~G~~~----~~~F~~i~~~~fp~gd~~~y~~~vF~~fD~~--~dg~i~F~Efi~als~~~rGt~eekl~w~F~ 107 (193)
T KOG0044|consen 34 GFKNECPSGRLT----LEEFREIYASFFPDGDASKYAELVFRTFDKN--KDGTIDFLEFICALSLTSRGTLEEKLKWAFR 107 (193)
T ss_pred HhcccCCCCccC----HHHHHHHHHHHCCCCCHHHHHHHHHHHhccc--CCCCcCHHHHHHHHHHHcCCcHHHHhhhhhe
Confidence 355666654311 2445555555544555567788999999999 99999999998877442 2233344455699
Q ss_pred HHcCCCCCCccHHHHHHHHHhh---CC-------CCCcHHHHHHHHHHhcCCCCCceeHHHHHHHHH
Q 027239 93 LFDTKHNGILDFEEFARALSIF---HP-------NSPIDDKIEFSFQLYDLKQQGFIERQEVKQMVV 149 (226)
Q Consensus 93 ~~d~~~~g~i~~~eF~~~~~~~---~~-------~~~~~~~~~~~F~~~D~d~~G~I~~~e~~~~l~ 149 (226)
.+|.|++|.|+++|++.++... .. ....++.+..+|+.+|.|+||.||.+||....+
T Consensus 108 lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~~~~~~~~~~v~~if~k~D~n~Dg~lT~eef~~~~~ 174 (193)
T KOG0044|consen 108 LYDLDGDGYITKEEMLKIVQAIYQMTGSKALPEDEETPEERVDKIFSKMDKNKDGKLTLEEFIEGCK 174 (193)
T ss_pred eecCCCCceEcHHHHHHHHHHHHHHcccccCCcccccHHHHHHHHHHHcCCCCCCcccHHHHHHHhh
Confidence 9999999999999999887642 11 123567899999999999999999999999753
No 25
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=99.10 E-value=7.6e-10 Score=75.12 Aligned_cols=69 Identities=19% Similarity=0.319 Sum_probs=57.6
Q ss_pred HHHHHHHHHhc-CCCCC-ceeHHHHHHHHHHHHhh-cCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHh
Q 027239 122 DKIEFSFQLYD-LKQQG-FIERQEVKQMVVATLTE-SGMNLSDDVIESIIDKTFEEADTKHDGKIDKEEWRNLVLR 194 (226)
Q Consensus 122 ~~~~~~F~~~D-~d~~G-~I~~~e~~~~l~~~~~~-~~~~~~~~~~~~~~~~~f~~~d~~~dG~Is~~eF~~~~~~ 194 (226)
..++.+|+.|| .+|+| .|+.+||+.+|+.-+.. .|...+++++++++ +..|.|++|.|+|+||+.++..
T Consensus 8 ~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i----~~~D~n~dG~v~f~eF~~li~~ 79 (88)
T cd05027 8 VALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVM----ETLDSDGDGECDFQEFMAFVAM 79 (88)
T ss_pred HHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHH----HHhCCCCCCcCcHHHHHHHHHH
Confidence 35889999998 79999 59999999998761111 37778888888888 7999999999999999988764
No 26
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.09 E-value=3.1e-09 Score=79.24 Aligned_cols=99 Identities=21% Similarity=0.347 Sum_probs=84.4
Q ss_pred HHHHHHHHcCCCCCCccHHHHHHHHHhhCCCCCcHHHHHHHHHHhcCCCCCceeHHHHHHHHHHHHhhcCCCCCHHHHHH
Q 027239 87 ADRVFDLFDTKHNGILDFEEFARALSIFHPNSPIDDKIEFSFQLYDLKQQGFIERQEVKQMVVATLTESGMNLSDDVIES 166 (226)
Q Consensus 87 ~~~lf~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~ 166 (226)
+++.|..+|.+++|.|+..++..+++.+.. ......+..+|..+|. |+|.|+..+|..+|... ....-+++++
T Consensus 22 lkeaF~l~D~d~~G~I~~~el~~ilr~lg~-~~s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~---~~~~~~~Eel-- 94 (160)
T COG5126 22 LKEAFQLFDRDSDGLIDRNELGKILRSLGF-NPSEAEINKLFEEIDA-GNETVDFPEFLTVMSVK---LKRGDKEEEL-- 94 (160)
T ss_pred HHHHHHHhCcCCCCCCcHHHHHHHHHHcCC-CCcHHHHHHHHHhccC-CCCccCHHHHHHHHHHH---hccCCcHHHH--
Confidence 578899999999999999999999986665 6888899999999999 99999999999997654 2233445554
Q ss_pred HHHHHHHHhCCCCCCcccHHHHHHHHHh
Q 027239 167 IIDKTFEEADTKHDGKIDKEEWRNLVLR 194 (226)
Q Consensus 167 ~~~~~f~~~d~~~dG~Is~~eF~~~~~~ 194 (226)
..+|+.+|.|++|+|+..+++.++..
T Consensus 95 --~~aF~~fD~d~dG~Is~~eL~~vl~~ 120 (160)
T COG5126 95 --REAFKLFDKDHDGYISIGELRRVLKS 120 (160)
T ss_pred --HHHHHHhCCCCCceecHHHHHHHHHh
Confidence 45669999999999999999999975
No 27
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=99.00 E-value=3.4e-09 Score=72.76 Aligned_cols=69 Identities=19% Similarity=0.283 Sum_probs=54.8
Q ss_pred HHHHHHHHhc-CCCCC-ceeHHHHHHHHHHHHh-hcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhC
Q 027239 123 KIEFSFQLYD-LKQQG-FIERQEVKQMVVATLT-ESGMNLSDDVIESIIDKTFEEADTKHDGKIDKEEWRNLVLRH 195 (226)
Q Consensus 123 ~~~~~F~~~D-~d~~G-~I~~~e~~~~l~~~~~-~~~~~~~~~~~~~~~~~~f~~~d~~~dG~Is~~eF~~~~~~~ 195 (226)
.++.+|+.|| .||+| .|+.+||+.+++..+. .+....++.++++++ +.+|.|++|.|+|+||+.++...
T Consensus 11 ~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~----~elD~n~dG~Idf~EF~~l~~~l 82 (93)
T cd05026 11 TLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIM----NDLDSNKDNEVDFNEFVVLVAAL 82 (93)
T ss_pred HHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHH----HHhCCCCCCCCCHHHHHHHHHHH
Confidence 4788899999 78998 5999999999866321 123444666776666 89999999999999999998764
No 28
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=98.98 E-value=1.4e-09 Score=69.79 Aligned_cols=61 Identities=36% Similarity=0.586 Sum_probs=41.6
Q ss_pred HHHHHHHhhcccCCCCCCccHHHHHHHHhccCCc-----chHHHHHHHHHHcCCCCCCccHHHHHHHH
Q 027239 49 ALYELFKKISSAVIDDGLINKEEFQLALFKTNKK-----ESLFADRVFDLFDTKHNGILDFEEFARAL 111 (226)
Q Consensus 49 ~l~~~F~~~D~~~~~~G~i~~~ef~~~l~~~~~~-----~~~~~~~lf~~~d~~~~g~i~~~eF~~~~ 111 (226)
+++++|..+|.+ ++|+|+.+||..++...+.. ....+..+|+.+|.|++|.|+|+||+.++
T Consensus 1 ~l~~~F~~~D~d--~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 1 RLKEAFKKFDKD--GDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHSTT--SSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred CHHHHHHHHcCC--ccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 366777778877 78888888888777665432 12345556777777777777777777653
No 29
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=98.97 E-value=6.4e-09 Score=71.31 Aligned_cols=72 Identities=18% Similarity=0.296 Sum_probs=57.6
Q ss_pred HHHHHHHHHHhc-CCCCCc-eeHHHHHHHHHH-HHhhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhCh
Q 027239 121 DDKIEFSFQLYD-LKQQGF-IERQEVKQMVVA-TLTESGMNLSDDVIESIIDKTFEEADTKHDGKIDKEEWRNLVLRHP 196 (226)
Q Consensus 121 ~~~~~~~F~~~D-~d~~G~-I~~~e~~~~l~~-~~~~~~~~~~~~~~~~~~~~~f~~~d~~~dG~Is~~eF~~~~~~~~ 196 (226)
.+.++.+|+.|| .+++|+ |+..|++.+++. +-...+..++++++++++ ..+|.+++|.|+|++|+.++....
T Consensus 8 ~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~----~~~D~d~~G~I~f~eF~~l~~~~~ 82 (92)
T cd05025 8 METLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIM----KELDENGDGEVDFQEFVVLVAALT 82 (92)
T ss_pred HHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHH----HHHCCCCCCcCcHHHHHHHHHHHH
Confidence 356899999997 999995 999999999865 311134456777777777 799999999999999999887643
No 30
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.97 E-value=5.7e-09 Score=71.85 Aligned_cols=72 Identities=21% Similarity=0.352 Sum_probs=58.6
Q ss_pred HHHHHHHHHHhcC-CC-CCceeHHHHHHHHHHHHh-hcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhCh
Q 027239 121 DDKIEFSFQLYDL-KQ-QGFIERQEVKQMVVATLT-ESGMNLSDDVIESIIDKTFEEADTKHDGKIDKEEWRNLVLRHP 196 (226)
Q Consensus 121 ~~~~~~~F~~~D~-d~-~G~I~~~e~~~~l~~~~~-~~~~~~~~~~~~~~~~~~f~~~d~~~dG~Is~~eF~~~~~~~~ 196 (226)
...++.+|..||. +| +|.|+.+|+..++...+. ..+..+++++++.++ +.+|.+++|.|+|++|+.++....
T Consensus 7 ~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~----~~~D~~~dg~I~f~eF~~l~~~~~ 81 (94)
T cd05031 7 MESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIM----KDLDQNRDGKVNFEEFVSLVAGLS 81 (94)
T ss_pred HHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHH----HHhCCCCCCcCcHHHHHHHHHHHH
Confidence 3458899999997 97 699999999999865221 146677888877777 799999999999999999887643
No 31
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=98.94 E-value=6.5e-09 Score=70.54 Aligned_cols=67 Identities=18% Similarity=0.347 Sum_probs=56.9
Q ss_pred HHHHHHHHhcC-CC-CCceeHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHh
Q 027239 123 KIEFSFQLYDL-KQ-QGFIERQEVKQMVVATLTESGMNLSDDVIESIIDKTFEEADTKHDGKIDKEEWRNLVLR 194 (226)
Q Consensus 123 ~~~~~F~~~D~-d~-~G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~dG~Is~~eF~~~~~~ 194 (226)
.+..+|..||. +| +|+|+.+||++++... ...|..++++++++++ +..|.|++|.|+|+||+.++..
T Consensus 11 ~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~-~~lg~k~t~~ev~~m~----~~~D~d~dG~Idf~EFv~lm~~ 79 (88)
T cd05029 11 LLVAIFHKYSGREGDKNTLSKKELKELIQKE-LTIGSKLQDAEIAKLM----EDLDRNKDQEVNFQEYVTFLGA 79 (88)
T ss_pred HHHHHHHHHHccCCCCCEECHHHHHHHHHHH-HhcCCCCCHHHHHHHH----HHhcCCCCCCCcHHHHHHHHHH
Confidence 47889999998 67 8999999999997531 1248889999988887 7999999999999999988875
No 32
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=98.93 E-value=2.1e-08 Score=73.68 Aligned_cols=100 Identities=21% Similarity=0.339 Sum_probs=84.6
Q ss_pred HHHHHHHHcCCCCCCccHHHHHHHHHhhCCCCCcHHHHHHHHHHhcCCCCCceeHHHHHHHHHHHHhhcCCCCCHHHHHH
Q 027239 87 ADRVFDLFDTKHNGILDFEEFARALSIFHPNSPIDDKIEFSFQLYDLKQQGFIERQEVKQMVVATLTESGMNLSDDVIES 166 (226)
Q Consensus 87 ~~~lf~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~ 166 (226)
++..|..||.+.+|.|+++|+..++..+.- ....+.+..+..-+|++|+|.|+.++|...+... .+..-+.+++..
T Consensus 35 i~e~f~lfd~~~~g~iD~~EL~vAmralGF-E~~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~k---~~e~dt~eEi~~ 110 (172)
T KOG0028|consen 35 IKEAFELFDPDMAGKIDVEELKVAMRALGF-EPKKEEILKLLADVDKEGSGKITFEDFRRVMTVK---LGERDTKEEIKK 110 (172)
T ss_pred HHHHHHhhccCCCCcccHHHHHHHHHHcCC-CcchHHHHHHHHhhhhccCceechHHHHHHHHHH---HhccCcHHHHHH
Confidence 577899999999999999999888877776 4667779999999999999999999999987544 344447777544
Q ss_pred HHHHHHHHhCCCCCCcccHHHHHHHHHh
Q 027239 167 IIDKTFEEADTKHDGKIDKEEWRNLVLR 194 (226)
Q Consensus 167 ~~~~~f~~~d~~~dG~Is~~eF~~~~~~ 194 (226)
+|+.+|-|++|+||+.+|...+..
T Consensus 111 ----afrl~D~D~~Gkis~~~lkrvake 134 (172)
T KOG0028|consen 111 ----AFRLFDDDKTGKISQRNLKRVAKE 134 (172)
T ss_pred ----HHHcccccCCCCcCHHHHHHHHHH
Confidence 458999999999999999998876
No 33
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=98.91 E-value=1.1e-08 Score=70.73 Aligned_cols=71 Identities=21% Similarity=0.417 Sum_probs=60.7
Q ss_pred CCCHHHHHHHHHHHHhhcccCCCCCCccHHHHHHHHhccCCcchHHHHHHHHHHcCCCCCCccHHHHHHHHHhh
Q 027239 41 VFSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTNKKESLFADRVFDLFDTKHNGILDFEEFARALSIF 114 (226)
Q Consensus 41 ~~s~~~i~~l~~~F~~~D~~~~~~G~i~~~ef~~~l~~~~~~~~~~~~~lf~~~d~~~~g~i~~~eF~~~~~~~ 114 (226)
.+|.+++..+...|..+|.+ ++|.|+.+++..++...+. ....+..++..+|.+++|.|+|+||+.++...
T Consensus 3 ~ls~~~~~~l~~~F~~~D~d--~~G~Is~~el~~~l~~~~~-~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~~ 73 (96)
T smart00027 3 AISPEDKAKYEQIFRSLDKN--QDGTVTGAQAKPILLKSGL-PQTLLAKIWNLADIDNDGELDKDEFALAMHLI 73 (96)
T ss_pred CCCHHHHHHHHHHHHHhCCC--CCCeEeHHHHHHHHHHcCC-CHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHH
Confidence 46888999999999999999 9999999999999877653 34557889999999999999999999887653
No 34
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=98.91 E-value=8.3e-09 Score=70.02 Aligned_cols=69 Identities=23% Similarity=0.267 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHhhcc-cCCCCCCccHHHHHHHHhc-cCCc-ch-HHHHHHHHHHcCCCCCCccHHHHHHHHHhhC
Q 027239 45 SEIEALYELFKKISS-AVIDDGLINKEEFQLALFK-TNKK-ES-LFADRVFDLFDTKHNGILDFEEFARALSIFH 115 (226)
Q Consensus 45 ~~i~~l~~~F~~~D~-~~~~~G~i~~~ef~~~l~~-~~~~-~~-~~~~~lf~~~d~~~~g~i~~~eF~~~~~~~~ 115 (226)
+-+..++..|..+|+ + ++|+|+..||+.++.. ++.. .. ..++.+++.+|.|++|.|+|+||+..+..+.
T Consensus 5 ~ai~~l~~~F~~fd~~~--~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l~ 77 (89)
T cd05022 5 KAIETLVSNFHKASVKG--GKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGELA 77 (89)
T ss_pred HHHHHHHHHHHHHhCCC--CCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHH
Confidence 347889999999999 8 9999999999999977 5532 23 5689999999999999999999999887653
No 35
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=98.84 E-value=2.5e-08 Score=68.48 Aligned_cols=68 Identities=21% Similarity=0.473 Sum_probs=54.9
Q ss_pred HHHHHHHHHHhhc-ccCCCCC-CccHHHHHHHHhcc------CCcchHHHHHHHHHHcCCCCCCccHHHHHHHHHhhC
Q 027239 46 EIEALYELFKKIS-SAVIDDG-LINKEEFQLALFKT------NKKESLFADRVFDLFDTKHNGILDFEEFARALSIFH 115 (226)
Q Consensus 46 ~i~~l~~~F~~~D-~~~~~~G-~i~~~ef~~~l~~~------~~~~~~~~~~lf~~~d~~~~g~i~~~eF~~~~~~~~ 115 (226)
-+..+.++|..+| .+ ++| +|+.+||..++... .......+..+++.+|.|++|.|+|+||+..+..+.
T Consensus 8 a~~~~~~~F~~~dd~d--gdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l~ 83 (93)
T cd05026 8 AMDTLIRIFHNYSGKE--GDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAALT 83 (93)
T ss_pred HHHHHHHHHHHHHccC--CCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHH
Confidence 4678888999999 67 888 59999999988551 122345689999999999999999999999887654
No 36
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=98.84 E-value=3.4e-08 Score=68.25 Aligned_cols=85 Identities=22% Similarity=0.323 Sum_probs=65.1
Q ss_pred HHHHHHHHHHhcCCCCCceeHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhChhhhh
Q 027239 121 DDKIEFSFQLYDLKQQGFIERQEVKQMVVATLTESGMNLSDDVIESIIDKTFEEADTKHDGKIDKEEWRNLVLRHPSLLK 200 (226)
Q Consensus 121 ~~~~~~~F~~~D~d~~G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~dG~Is~~eF~~~~~~~~~l~~ 200 (226)
...++.+|+.+|.+++|.|+.+++..++... + ++++++..++ ..+|.+++|.|+|+||+.++..-...
T Consensus 9 ~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~----~--~~~~ev~~i~----~~~d~~~~g~I~~~eF~~~~~~~~~~-- 76 (96)
T smart00027 9 KAKYEQIFRSLDKNQDGTVTGAQAKPILLKS----G--LPQTLLAKIW----NLADIDNDGELDKDEFALAMHLIYRK-- 76 (96)
T ss_pred HHHHHHHHHHhCCCCCCeEeHHHHHHHHHHc----C--CCHHHHHHHH----HHhcCCCCCCcCHHHHHHHHHHHHHH--
Confidence 4568999999999999999999999997542 3 6777766666 79999999999999999988753322
Q ss_pred hhhcccccccccccccccccc
Q 027239 201 NMTLQYLKDITTTFPSFVFHS 221 (226)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~ 221 (226)
.....+.-.+|..|..+
T Consensus 77 ----~~g~~~~~~~~~~~~~~ 93 (96)
T smart00027 77 ----LNGYPIPASLPPSLIPP 93 (96)
T ss_pred ----HcCCCCCccCCHhhcCC
Confidence 22445556666666543
No 37
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=98.82 E-value=3.8e-08 Score=66.89 Aligned_cols=69 Identities=17% Similarity=0.291 Sum_probs=54.8
Q ss_pred HHHHHHHHH-hcCCCCC-ceeHHHHHHHHHHHHhh-cCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHh
Q 027239 122 DKIEFSFQL-YDLKQQG-FIERQEVKQMVVATLTE-SGMNLSDDVIESIIDKTFEEADTKHDGKIDKEEWRNLVLR 194 (226)
Q Consensus 122 ~~~~~~F~~-~D~d~~G-~I~~~e~~~~l~~~~~~-~~~~~~~~~~~~~~~~~f~~~d~~~dG~Is~~eF~~~~~~ 194 (226)
..+..+|+. +|.+|+| .|+.+||+.+++.-+.. .+...++.+++.++ +..|.|+||.|+|+||+.++..
T Consensus 9 ~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll----~~~D~d~DG~I~f~EF~~l~~~ 80 (89)
T cd05023 9 ESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMM----KKLDLNSDGQLDFQEFLNLIGG 80 (89)
T ss_pred HHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHH----HHcCCCCCCcCcHHHHHHHHHH
Confidence 457889999 6788876 99999999998665332 23355667777766 8999999999999999998875
No 38
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=98.82 E-value=3.1e-08 Score=76.25 Aligned_cols=97 Identities=20% Similarity=0.276 Sum_probs=77.1
Q ss_pred HHHHHhhcccCCCCCC-ccHHHHHHHHhccCCc--chHHHHHHHHHHcCCCCCCccHHHHHHHHHhhCCCCCc------H
Q 027239 51 YELFKKISSAVIDDGL-INKEEFQLALFKTNKK--ESLFADRVFDLFDTKHNGILDFEEFARALSIFHPNSPI------D 121 (226)
Q Consensus 51 ~~~F~~~D~~~~~~G~-i~~~ef~~~l~~~~~~--~~~~~~~lf~~~d~~~~g~i~~~eF~~~~~~~~~~~~~------~ 121 (226)
.++++.++.+ ++|. |+.++|.+.+...... ....++=+|+.||.+++|.|+.+|+..++..+...... .
T Consensus 69 ~rI~~~f~~~--~~~~~v~F~~Fv~~ls~f~~~~~~~~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~~~~e~~~ 146 (187)
T KOG0034|consen 69 DRIIDRFDTD--GNGDPVDFEEFVRLLSVFSPKASKREKLRFAFRVYDLDGDGFISREELKQILRMMVGENDDMSDEQLE 146 (187)
T ss_pred HHHHHHHhcc--CCCCccCHHHHHHHHhhhcCCccHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCcchHHHHH
Confidence 4667777777 7777 9999999988553332 23345668999999999999999999999887763333 3
Q ss_pred HHHHHHHHHhcCCCCCceeHHHHHHHHH
Q 027239 122 DKIEFSFQLYDLKQQGFIERQEVKQMVV 149 (226)
Q Consensus 122 ~~~~~~F~~~D~d~~G~I~~~e~~~~l~ 149 (226)
+.+...|..+|.|++|.|+.+|+.+++.
T Consensus 147 ~i~d~t~~e~D~d~DG~IsfeEf~~~v~ 174 (187)
T KOG0034|consen 147 DIVDKTFEEADTDGDGKISFEEFCKVVE 174 (187)
T ss_pred HHHHHHHHHhCCCCCCcCcHHHHHHHHH
Confidence 4478899999999999999999999864
No 39
>PLN02964 phosphatidylserine decarboxylase
Probab=98.82 E-value=6.7e-08 Score=87.07 Aligned_cols=98 Identities=19% Similarity=0.299 Sum_probs=76.0
Q ss_pred HHHHHHHHHcCCCCCCccHHHHHHHHHhhCCCCCcHHH---HHHHHHHhcCCCCCceeHHHHHHHHHHHHhhcCCCCCHH
Q 027239 86 FADRVFDLFDTKHNGILDFEEFARALSIFHPNSPIDDK---IEFSFQLYDLKQQGFIERQEVKQMVVATLTESGMNLSDD 162 (226)
Q Consensus 86 ~~~~lf~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~---~~~~F~~~D~d~~G~I~~~e~~~~l~~~~~~~~~~~~~~ 162 (226)
.+.+.|..+|.|++|.+ +-.++..+......++. +..+|+.+|.+++|.|+.+||..++..+ +...+++
T Consensus 144 elkeaF~lfD~dgdG~i----Lg~ilrslG~~~pte~e~~fi~~mf~~~D~DgdG~IdfdEFl~lL~~l----g~~~seE 215 (644)
T PLN02964 144 SACESFDLLDPSSSNKV----VGSIFVSCSIEDPVETERSFARRILAIVDYDEDGQLSFSEFSDLIKAF----GNLVAAN 215 (644)
T ss_pred HHHHHHHHHCCCCCCcC----HHHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHh----ccCCCHH
Confidence 35778999999999987 34444444311233443 8999999999999999999999997654 6666776
Q ss_pred HHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhC
Q 027239 163 VIESIIDKTFEEADTKHDGKIDKEEWRNLVLRH 195 (226)
Q Consensus 163 ~~~~~~~~~f~~~d~~~dG~Is~~eF~~~~~~~ 195 (226)
++. .+|+.+|.|++|.|+++||..++...
T Consensus 216 EL~----eaFk~fDkDgdG~Is~dEL~~vL~~~ 244 (644)
T PLN02964 216 KKE----ELFKAADLNGDGVVTIDELAALLALQ 244 (644)
T ss_pred HHH----HHHHHhCCCCCCcCCHHHHHHHHHhc
Confidence 654 45589999999999999999998873
No 40
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=98.81 E-value=4.2e-08 Score=66.63 Aligned_cols=71 Identities=20% Similarity=0.347 Sum_probs=55.9
Q ss_pred HHHHHHHHHHhcC--CCCCceeHHHHHHHHHHHHhh-cCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhC
Q 027239 121 DDKIEFSFQLYDL--KQQGFIERQEVKQMVVATLTE-SGMNLSDDVIESIIDKTFEEADTKHDGKIDKEEWRNLVLRH 195 (226)
Q Consensus 121 ~~~~~~~F~~~D~--d~~G~I~~~e~~~~l~~~~~~-~~~~~~~~~~~~~~~~~f~~~d~~~dG~Is~~eF~~~~~~~ 195 (226)
.+.++.+|..||. +++|.|+.+||..++...+.. .+...++.+++.++ ..+|.+++|.|+|++|+.++...
T Consensus 7 ~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~----~~~d~~~~g~I~f~eF~~~~~~~ 80 (88)
T cd00213 7 IETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIM----KDLDVNKDGKVDFQEFLVLIGKL 80 (88)
T ss_pred HHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHH----HHhccCCCCcCcHHHHHHHHHHH
Confidence 3458889999999 899999999999997652111 12334577776666 89999999999999999988763
No 41
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=98.81 E-value=2.4e-08 Score=63.90 Aligned_cols=60 Identities=32% Similarity=0.484 Sum_probs=50.1
Q ss_pred HHHHHHhcCCCCCceeHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHh
Q 027239 125 EFSFQLYDLKQQGFIERQEVKQMVVATLTESGMNLSDDVIESIIDKTFEEADTKHDGKIDKEEWRNLVLR 194 (226)
Q Consensus 125 ~~~F~~~D~d~~G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~dG~Is~~eF~~~~~~ 194 (226)
+.+|+.+|.+++|.|+.+|+..++..+ | ++++++..++ ..+|.+++|.|+|+||+.++..
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~----g--~~~~~~~~i~----~~~d~~~~g~i~~~ef~~~~~~ 61 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKS----G--LPRSVLAQIW----DLADTDKDGKLDKEEFAIAMHL 61 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHc----C--CCHHHHHHHH----HHhcCCCCCcCCHHHHHHHHHH
Confidence 568999999999999999999996553 4 3666665555 8999999999999999988865
No 42
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=98.80 E-value=3.8e-08 Score=66.79 Aligned_cols=67 Identities=22% Similarity=0.412 Sum_probs=56.4
Q ss_pred HHHHHHHHHHhhc-ccCCCCC-CccHHHHHHHHhc-----cCCcc-hHHHHHHHHHHcCCCCCCccHHHHHHHHHhh
Q 027239 46 EIEALYELFKKIS-SAVIDDG-LINKEEFQLALFK-----TNKKE-SLFADRVFDLFDTKHNGILDFEEFARALSIF 114 (226)
Q Consensus 46 ~i~~l~~~F~~~D-~~~~~~G-~i~~~ef~~~l~~-----~~~~~-~~~~~~lf~~~d~~~~g~i~~~eF~~~~~~~ 114 (226)
-+..+.++|..+| ++ ++| +|+..+|+.+|.. .+... ...++++++.+|.|++|.|+|+||+..+...
T Consensus 6 ~~~~l~~aF~~fD~~d--gdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~~ 80 (88)
T cd05027 6 AMVALIDVFHQYSGRE--GDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAMV 80 (88)
T ss_pred HHHHHHHHHHHhcccC--CCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 4778999999998 78 999 5999999999987 55443 4558999999999999999999999888654
No 43
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=98.77 E-value=3.7e-08 Score=60.48 Aligned_cols=52 Identities=29% Similarity=0.544 Sum_probs=45.0
Q ss_pred CCCceeHHHHHHHHHHHHhhcCCC-CCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHh
Q 027239 135 QQGFIERQEVKQMVVATLTESGMN-LSDDVIESIIDKTFEEADTKHDGKIDKEEWRNLVLR 194 (226)
Q Consensus 135 ~~G~I~~~e~~~~l~~~~~~~~~~-~~~~~~~~~~~~~f~~~d~~~dG~Is~~eF~~~~~~ 194 (226)
.+|.|+.++|..++.. .|.. ++++++..++ ..+|.+++|.|+|+||+.++..
T Consensus 1 ~~G~i~~~~~~~~l~~----~g~~~~s~~e~~~l~----~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 1 KDGKITREEFRRALSK----LGIKDLSEEEVDRLF----REFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp SSSEEEHHHHHHHHHH----TTSSSSCHHHHHHHH----HHHTTSSSSSEEHHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHH----hCCCCCCHHHHHHHH----HhcccCCCCCCCHHHHHHHHHh
Confidence 3799999999999644 3888 9999977666 8999999999999999998864
No 44
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=98.72 E-value=8.1e-08 Score=65.19 Aligned_cols=69 Identities=25% Similarity=0.433 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHhhcc--cCCCCCCccHHHHHHHHhc-cCC-----cchHHHHHHHHHHcCCCCCCccHHHHHHHHHhh
Q 027239 44 VSEIEALYELFKKISS--AVIDDGLINKEEFQLALFK-TNK-----KESLFADRVFDLFDTKHNGILDFEEFARALSIF 114 (226)
Q Consensus 44 ~~~i~~l~~~F~~~D~--~~~~~G~i~~~ef~~~l~~-~~~-----~~~~~~~~lf~~~d~~~~g~i~~~eF~~~~~~~ 114 (226)
+++++.++..|..+|. + ++|.|+.++|..++.. .+. .....+..++..+|.+++|.|+|++|+..+...
T Consensus 4 ~~~~~~l~~~F~~~D~~~~--~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~ 80 (88)
T cd00213 4 EKAIETIIDVFHKYSGKEG--DKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGKL 80 (88)
T ss_pred HHHHHHHHHHHHHHhhccC--CCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHH
Confidence 4678889999999999 8 9999999999988854 221 125568899999999999999999999988653
No 45
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=98.72 E-value=7.7e-08 Score=59.85 Aligned_cols=61 Identities=36% Similarity=0.594 Sum_probs=51.2
Q ss_pred HHHHHHHhcCCCCCceeHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHH
Q 027239 124 IEFSFQLYDLKQQGFIERQEVKQMVVATLTESGMNLSDDVIESIIDKTFEEADTKHDGKIDKEEWRNLV 192 (226)
Q Consensus 124 ~~~~F~~~D~d~~G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~dG~Is~~eF~~~~ 192 (226)
+..+|+.+|.+++|.|+.+++..++..+ +...+.+.+..++ ..++.+++|.|++++|..++
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~----~~~~~~~~~~~~~----~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSL----GEGLSEEEIDEMI----REVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHh----CCCCCHHHHHHHH----HHhCCCCCCeEeHHHHHHHh
Confidence 5678999999999999999999996654 7778877665554 89999999999999998765
No 46
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=98.71 E-value=6.8e-08 Score=68.77 Aligned_cols=64 Identities=23% Similarity=0.436 Sum_probs=52.1
Q ss_pred CcHHHHHHHHHHhcCCCCCceeHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHh
Q 027239 119 PIDDKIEFSFQLYDLKQQGFIERQEVKQMVVATLTESGMNLSDDVIESIIDKTFEEADTKHDGKIDKEEWRNLVLR 194 (226)
Q Consensus 119 ~~~~~~~~~F~~~D~d~~G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~dG~Is~~eF~~~~~~ 194 (226)
.....+..+|..+|.|++|.|+.+|+..+. .... +..+..+|+.+|.|+||.||++||...+.+
T Consensus 45 ~~~~~l~w~F~~lD~d~DG~Ls~~EL~~~~--------l~~~----e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl~~ 108 (116)
T cd00252 45 MCKDPVGWMFNQLDGNYDGKLSHHELAPIR--------LDPN----EHCIKPFFESCDLDKDGSISLDEWCYCFIK 108 (116)
T ss_pred HHHHHHHHHHHHHCCCCCCcCCHHHHHHHH--------ccch----HHHHHHHHHHHCCCCCCCCCHHHHHHHHhC
Confidence 345679999999999999999999999873 1122 344566779999999999999999999944
No 47
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=98.70 E-value=6.9e-08 Score=75.79 Aligned_cols=145 Identities=18% Similarity=0.241 Sum_probs=105.3
Q ss_pred HHHHHHHHHhhcccCCCCCCccHHHHHHHHhccC----CcchHHHHHHHHHHcCCCCCCccHHHHHHHHHhhCCCCC---
Q 027239 47 IEALYELFKKISSAVIDDGLINKEEFQLALFKTN----KKESLFADRVFDLFDTKHNGILDFEEFARALSIFHPNSP--- 119 (226)
Q Consensus 47 i~~l~~~F~~~D~~~~~~G~i~~~ef~~~l~~~~----~~~~~~~~~lf~~~d~~~~g~i~~~eF~~~~~~~~~~~~--- 119 (226)
-+.+..+|.+-|.+ .+|+|+..|+.+.+.... .......+.-|+..|+|++|.|+|+||...+.....+..
T Consensus 100 rrklmviFsKvDVN--tDrkisAkEmqrwImektaEHfqeameeSkthFraVDpdgDGhvsWdEykvkFlaskghsekev 177 (362)
T KOG4251|consen 100 RRKLMVIFSKVDVN--TDRKISAKEMQRWIMEKTAEHFQEAMEESKTHFRAVDPDGDGHVSWDEYKVKFLASKGHSEKEV 177 (362)
T ss_pred HHHHHHHHhhcccC--ccccccHHHHHHHHHHHHHHHHHHHHhhhhhheeeeCCCCCCceehhhhhhHHHhhcCcchHHH
Confidence 45688999999999 999999999998874421 111122466799999999999999999876554322110
Q ss_pred --------------------------------------------------------cHHHHHHHHHHhcCCCCCceeHHH
Q 027239 120 --------------------------------------------------------IDDKIEFSFQLYDLKQQGFIERQE 143 (226)
Q Consensus 120 --------------------------------------------------------~~~~~~~~F~~~D~d~~G~I~~~e 143 (226)
...-++.+.+.+|.||+..++..|
T Consensus 178 adairlneelkVDeEtqevlenlkdRwyqaDsppadlllteeEflsFLHPEhSrgmLrfmVkeivrdlDqdgDkqlSvpe 257 (362)
T KOG4251|consen 178 ADAIRLNEELKVDEETQEVLENLKDRWYQADSPPADLLLTEEEFLSFLHPEHSRGMLRFMVKEIVRDLDQDGDKQLSVPE 257 (362)
T ss_pred HHHhhccCcccccHHHHHHHHhhhhhhccccCchhhhhhhHHHHHHHcChHhhhhhHHHHHHHHHHHhccCCCeeecchh
Confidence 011145567779999999999999
Q ss_pred HHHHHHHHHh-hcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHH
Q 027239 144 VKQMVVATLT-ESGMNLSDDVIESIIDKTFEEADTKHDGKIDKEEWRNLVL 193 (226)
Q Consensus 144 ~~~~l~~~~~-~~~~~~~~~~~~~~~~~~f~~~d~~~dG~Is~~eF~~~~~ 193 (226)
|.+..-.... ..|.++....++.-.+.+=..+|.|+||.++++|...|+.
T Consensus 258 FislpvGTVenqqgqdiddnwvkdRkkEFeElIDsNhDGivTaeELe~y~d 308 (362)
T KOG4251|consen 258 FISLPVGTVENQQGQDIDDNWVKDRKKEFEELIDSNHDGIVTAEELEDYVD 308 (362)
T ss_pred hhcCCCcchhhhhccchHHHHHHHHHHHHHHHhhcCCccceeHHHHHhhcC
Confidence 9985322211 1345666666777676677889999999999999998864
No 48
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=98.69 E-value=1.7e-07 Score=63.56 Aligned_cols=68 Identities=18% Similarity=0.318 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHhhcc-cCCC-CCCccHHHHHHHHhc---cCC-cchHHHHHHHHHHcCCCCCCccHHHHHHHHHhh
Q 027239 45 SEIEALYELFKKISS-AVID-DGLINKEEFQLALFK---TNK-KESLFADRVFDLFDTKHNGILDFEEFARALSIF 114 (226)
Q Consensus 45 ~~i~~l~~~F~~~D~-~~~~-~G~i~~~ef~~~l~~---~~~-~~~~~~~~lf~~~d~~~~g~i~~~eF~~~~~~~ 114 (226)
+.+..+..+|.++|. + + +|+|+.+||+.++.. .+. .....+.++++.+|.|++|.|+|+||+..+..+
T Consensus 7 ~~~~~~i~~F~~y~~~~--~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l 80 (88)
T cd05029 7 QAIGLLVAIFHKYSGRE--GDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGAL 80 (88)
T ss_pred HHHHHHHHHHHHHHccC--CCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHH
Confidence 457788999999998 4 4 789999999999852 343 345668999999999999999999999888654
No 49
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=98.68 E-value=1.2e-07 Score=60.59 Aligned_cols=60 Identities=33% Similarity=0.499 Sum_probs=45.8
Q ss_pred HHHHHhhcccCCCCCCccHHHHHHHHhccCCcchHHHHHHHHHHcCCCCCCccHHHHHHHHHh
Q 027239 51 YELFKKISSAVIDDGLINKEEFQLALFKTNKKESLFADRVFDLFDTKHNGILDFEEFARALSI 113 (226)
Q Consensus 51 ~~~F~~~D~~~~~~G~i~~~ef~~~l~~~~~~~~~~~~~lf~~~d~~~~g~i~~~eF~~~~~~ 113 (226)
++.|..+|.+ ++|.|+.+|+..++...+. ....+..++..+|.+++|.|+|+||+..+..
T Consensus 2 ~~~F~~~D~~--~~G~i~~~el~~~l~~~g~-~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~ 61 (67)
T cd00052 2 DQIFRSLDPD--GDGLISGDEARPFLGKSGL-PRSVLAQIWDLADTDKDGKLDKEEFAIAMHL 61 (67)
T ss_pred hHHHHHhCCC--CCCcCcHHHHHHHHHHcCC-CHHHHHHHHHHhcCCCCCcCCHHHHHHHHHH
Confidence 4577788888 8888888888887766554 4455678888888888888888888887754
No 50
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=98.68 E-value=7.9e-07 Score=84.46 Aligned_cols=142 Identities=16% Similarity=0.296 Sum_probs=112.6
Q ss_pred hhcCCCHHHHHHHHHHHHhhcccCCCCCCccHHHHHHHHhccCC--------cchHHHHHHHHHHcCCCCCCccHHHHHH
Q 027239 38 RETVFSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTNK--------KESLFADRVFDLFDTKHNGILDFEEFAR 109 (226)
Q Consensus 38 ~~~~~s~~~i~~l~~~F~~~D~~~~~~G~i~~~ef~~~l~~~~~--------~~~~~~~~lf~~~d~~~~g~i~~~eF~~ 109 (226)
..++.|.++++++.-+|+-+|++ .+|+++.++|..+|++.|- .++|..++++..+|++.+|.|+..+|+.
T Consensus 2243 n~~GVtEe~L~EFs~~fkhFDke--k~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~a 2320 (2399)
T KOG0040|consen 2243 NHNGVTEEQLKEFSMMFKHFDKE--KNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMA 2320 (2399)
T ss_pred ccCCCCHHHHHHHHHHHHHhchh--hccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHH
Confidence 45789999999999999999999 9999999999999987542 2356789999999999999999999999
Q ss_pred HHHhhCC-CCCcHHHHHHHHHHhcCCCCCceeHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhCCC----CCCccc
Q 027239 110 ALSIFHP-NSPIDDKIEFSFQLYDLKQQGFIERQEVKQMVVATLTESGMNLSDDVIESIIDKTFEEADTK----HDGKID 184 (226)
Q Consensus 110 ~~~~~~~-~~~~~~~~~~~F~~~D~d~~G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~----~dG~Is 184 (226)
+|-.... .....+.+..+|+.+|. |..||+.+++... ++.++++-.+..+-...++. ..+.+.
T Consensus 2321 fmi~~ETeNI~s~~eIE~AfraL~a-~~~yvtke~~~~~-----------ltreqaefc~s~m~~~~e~~~~~s~q~~l~ 2388 (2399)
T KOG0040|consen 2321 FMISKETENILSSEEIEDAFRALDA-GKPYVTKEELYQN-----------LTREQAEFCMSKMKPYAETSSGRSDQVALD 2388 (2399)
T ss_pred HHHhcccccccchHHHHHHHHHhhc-CCccccHHHHHhc-----------CCHHHHHHHHHHhhhhcccccCCCcccccc
Confidence 9865322 12334579999999999 7889999988764 56666666665555666653 234689
Q ss_pred HHHHHHHHH
Q 027239 185 KEEWRNLVL 193 (226)
Q Consensus 185 ~~eF~~~~~ 193 (226)
|.+|.+.+.
T Consensus 2389 y~dfv~sl~ 2397 (2399)
T KOG0040|consen 2389 YKDFVNSLF 2397 (2399)
T ss_pred HHHHHHHHh
Confidence 999987654
No 51
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=98.67 E-value=1.1e-07 Score=65.08 Aligned_cols=68 Identities=24% Similarity=0.410 Sum_probs=54.5
Q ss_pred HHHHHHHHHHhhc-ccCCCCC-CccHHHHHHHHhc-cC-----CcchHHHHHHHHHHcCCCCCCccHHHHHHHHHhhC
Q 027239 46 EIEALYELFKKIS-SAVIDDG-LINKEEFQLALFK-TN-----KKESLFADRVFDLFDTKHNGILDFEEFARALSIFH 115 (226)
Q Consensus 46 ~i~~l~~~F~~~D-~~~~~~G-~i~~~ef~~~l~~-~~-----~~~~~~~~~lf~~~d~~~~g~i~~~eF~~~~~~~~ 115 (226)
-+..+++.|..+| .+ ++| .|+..++..+|.. .+ ......++.+++.+|.+++|.|+|++|+.++..+.
T Consensus 7 ~~~~l~~~F~~fDd~d--g~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~~ 82 (92)
T cd05025 7 AMETLINVFHAHSGKE--GDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAALT 82 (92)
T ss_pred HHHHHHHHHHHHhccc--CCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHHH
Confidence 3567889999996 88 999 4999999998864 32 12455688999999999999999999998886543
No 52
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=98.67 E-value=1.2e-07 Score=80.00 Aligned_cols=133 Identities=22% Similarity=0.407 Sum_probs=100.6
Q ss_pred HHHHHHHHHhhcccCCCCCCccHHHHHHHHhccC----CcchHHHHHHHHHHcCCCCCCccHHHHHHHHHhhCCCCCcHH
Q 027239 47 IEALYELFKKISSAVIDDGLINKEEFQLALFKTN----KKESLFADRVFDLFDTKHNGILDFEEFARALSIFHPNSPIDD 122 (226)
Q Consensus 47 i~~l~~~F~~~D~~~~~~G~i~~~ef~~~l~~~~----~~~~~~~~~lf~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~ 122 (226)
.+.+.--|..+|+. .+|.|+..+|..+|.... .....+.+++-+.++.++ ..|+++||.++..-... ..
T Consensus 317 ~Eil~lEF~~~~~~--~~g~Ise~DFA~~lL~~a~~n~~~k~~~lkrvk~kf~~~~-~gISl~Ef~~Ff~Fl~~----l~ 389 (489)
T KOG2643|consen 317 EEILELEFERFDKG--DSGAISEVDFAELLLAYAGVNSKKKHKYLKRVKEKFKDDG-KGISLQEFKAFFRFLNN----LN 389 (489)
T ss_pred HHHHHHHHHHhCcc--cccccCHHHHHHHHHHHcccchHhHHHHHHHHHHhccCCC-CCcCHHHHHHHHHHHhh----hh
Confidence 34566779999987 789999999999885533 222446778888887763 45999999998865543 33
Q ss_pred HHHHHHHHhcCCCCCceeHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHh
Q 027239 123 KIEFSFQLYDLKQQGFIERQEVKQMVVATLTESGMNLSDDVIESIIDKTFEEADTKHDGKIDKEEWRNLVLR 194 (226)
Q Consensus 123 ~~~~~F~~~D~d~~G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~dG~Is~~eF~~~~~~ 194 (226)
.+..|...|-.- .+.|+..+|+++.... .|.++++.. +..+|..+|.|+||.|+++||+..|.+
T Consensus 390 dfd~Al~fy~~A-g~~i~~~~f~raa~~v---tGveLSdhV----vdvvF~IFD~N~Dg~LS~~EFl~Vmk~ 453 (489)
T KOG2643|consen 390 DFDIALRFYHMA-GASIDEKTFQRAAKVV---TGVELSDHV----VDVVFTIFDENNDGTLSHKEFLAVMKR 453 (489)
T ss_pred HHHHHHHHHHHc-CCCCCHHHHHHHHHHh---cCcccccce----eeeEEEEEccCCCCcccHHHHHHHHHH
Confidence 466666666544 3689999999998665 688888764 455568999999999999999999875
No 53
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=98.66 E-value=6.3e-08 Score=78.82 Aligned_cols=154 Identities=18% Similarity=0.220 Sum_probs=111.7
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHhhc-ccCCCCCCccHHHHHHHHhccCCcchHHHHHHHHHHcCCCCCCccHHHHHHHH
Q 027239 33 PEALARETVFSVSEIEALYELFKKIS-SAVIDDGLINKEEFQLALFKTNKKESLFADRVFDLFDTKHNGILDFEEFARAL 111 (226)
Q Consensus 33 ~~~~~~~~~~s~~~i~~l~~~F~~~D-~~~~~~G~i~~~ef~~~l~~~~~~~~~~~~~lf~~~d~~~~g~i~~~eF~~~~ 111 (226)
.-+....-.+....+..=...|.... .. +.+.|--.+|...++ ...+.....+|..||.+++|.++|.|.+..+
T Consensus 211 F~~~~r~lkL~~~gl~k~ld~y~~var~~--kg~~igi~efa~~l~---vpvsd~l~~~f~LFde~~tg~~D~re~v~~l 285 (412)
T KOG4666|consen 211 FVAKRRVLKLPLVGLIKKLDGYVYVAREA--KGPDIGIVEFAVNLR---VPVSDKLAPTFMLFDEGTTGNGDYRETVKTL 285 (412)
T ss_pred HHHHHhccCCChHHHHHHHhhHHHHHHhc--cCCCcceeEeeeeee---cchhhhhhhhhheecCCCCCcccHHHHhhhh
Confidence 34444444555555433333332222 22 556777777764432 2223345788999999999999999999999
Q ss_pred HhhCCCCCcHHHHHHHHHHhcCCCCCceeHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHH
Q 027239 112 SIFHPNSPIDDKIEFSFQLYDLKQQGFIERQEVKQMVVATLTESGMNLSDDVIESIIDKTFEEADTKHDGKIDKEEWRNL 191 (226)
Q Consensus 112 ~~~~~~~~~~~~~~~~F~~~D~d~~G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~dG~Is~~eF~~~ 191 (226)
+.++.......-++.+|+.|+.+.||++...+|.-+++.. .|.. .-. +-.+|...+...+|+|+|.+|.++
T Consensus 286 avlc~p~~t~~iiq~afk~f~v~eDg~~ge~~ls~ilq~~---lgv~--~l~----v~~lf~~i~q~d~~ki~~~~f~~f 356 (412)
T KOG4666|consen 286 AVLCGPPVTPVIIQYAFKRFSVAEDGISGEHILSLILQVV---LGVE--VLR----VPVLFPSIEQKDDPKIYASNFRKF 356 (412)
T ss_pred eeeeCCCCcHHHHHHHHHhcccccccccchHHHHHHHHHh---cCcc--eee----ccccchhhhcccCcceeHHHHHHH
Confidence 9999877788889999999999999999999998887665 2322 111 334568888899999999999999
Q ss_pred HHhChhhhh
Q 027239 192 VLRHPSLLK 200 (226)
Q Consensus 192 ~~~~~~l~~ 200 (226)
+..+|++..
T Consensus 357 a~~~p~~a~ 365 (412)
T KOG4666|consen 357 AATEPNLAL 365 (412)
T ss_pred HHhCchhhh
Confidence 999998875
No 54
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=98.65 E-value=2.1e-07 Score=63.21 Aligned_cols=68 Identities=28% Similarity=0.424 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHh-hcccCCCCC-CccHHHHHHHHhccC------CcchHHHHHHHHHHcCCCCCCccHHHHHHHHHhh
Q 027239 45 SEIEALYELFKK-ISSAVIDDG-LINKEEFQLALFKTN------KKESLFADRVFDLFDTKHNGILDFEEFARALSIF 114 (226)
Q Consensus 45 ~~i~~l~~~F~~-~D~~~~~~G-~i~~~ef~~~l~~~~------~~~~~~~~~lf~~~d~~~~g~i~~~eF~~~~~~~ 114 (226)
+.+..|..+|.. .|++ ++| +|+.+||..++.... ......+..+++.+|.|++|.|+|+||+..+..+
T Consensus 6 ~~i~~l~~~F~~y~~~d--g~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l 81 (89)
T cd05023 6 RCIESLIAVFQKYAGKD--GDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGL 81 (89)
T ss_pred HHHHHHHHHHHHHhccC--CCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 457889999999 6676 665 999999999886641 2234567899999999999999999999988654
No 55
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.60 E-value=3.6e-07 Score=62.86 Aligned_cols=65 Identities=20% Similarity=0.428 Sum_probs=52.1
Q ss_pred HHHHHHHHHhhcc-cCCC-CCCccHHHHHHHHhc-----cCC-cchHHHHHHHHHHcCCCCCCccHHHHHHHHHh
Q 027239 47 IEALYELFKKISS-AVID-DGLINKEEFQLALFK-----TNK-KESLFADRVFDLFDTKHNGILDFEEFARALSI 113 (226)
Q Consensus 47 i~~l~~~F~~~D~-~~~~-~G~i~~~ef~~~l~~-----~~~-~~~~~~~~lf~~~d~~~~g~i~~~eF~~~~~~ 113 (226)
+..++..|..+|. + + +|.|+.+|+..++.. .+. .....+..++..+|.+++|.|+|++|+.++..
T Consensus 7 ~~~l~~~F~~~D~~d--g~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~ 79 (94)
T cd05031 7 MESLILTFHRYAGKD--GDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAG 79 (94)
T ss_pred HHHHHHHHHHHhccC--CCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 5678889999986 7 7 699999999988764 222 24556788999999999999999999988764
No 56
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=98.57 E-value=4.1e-07 Score=64.81 Aligned_cols=65 Identities=12% Similarity=0.227 Sum_probs=52.4
Q ss_pred CCHHHHHHHHHHHHhhcccCCCCCCccHHHHHHHHhccCCcchHHHHHHHHHHcCCCCCCccHHHHHHHH
Q 027239 42 FSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTNKKESLFADRVFDLFDTKHNGILDFEEFARAL 111 (226)
Q Consensus 42 ~s~~~i~~l~~~F~~~D~~~~~~G~i~~~ef~~~l~~~~~~~~~~~~~lf~~~d~~~~g~i~~~eF~~~~ 111 (226)
+.+.....+...|..+|.| ++|.|+.+|+..+. .......+.++|..+|.|++|.||++||..++
T Consensus 42 ~~~~~~~~l~w~F~~lD~d--~DG~Ls~~EL~~~~---l~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl 106 (116)
T cd00252 42 LYPMCKDPVGWMFNQLDGN--YDGKLSHHELAPIR---LDPNEHCIKPFFESCDLDKDGSISLDEWCYCF 106 (116)
T ss_pred hhHHHHHHHHHHHHHHCCC--CCCcCCHHHHHHHH---ccchHHHHHHHHHHHCCCCCCCCCHHHHHHHH
Confidence 3566778889999999999 99999999998654 22334556888999999999999999998888
No 57
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=98.53 E-value=8.1e-07 Score=67.76 Aligned_cols=116 Identities=19% Similarity=0.226 Sum_probs=91.4
Q ss_pred CCCHHHHHhhcCCCHHHHHHHHHHHHhhcccCCCCCCccHHHHHHHHhccCCcc-hHHHHHHHHHHcCCCCCCccHHHHH
Q 027239 30 LEDPEALARETVFSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTNKKE-SLFADRVFDLFDTKHNGILDFEEFA 108 (226)
Q Consensus 30 ~~~~~~~~~~~~~s~~~i~~l~~~F~~~D~~~~~~G~i~~~ef~~~l~~~~~~~-~~~~~~lf~~~d~~~~g~i~~~eF~ 108 (226)
..-..-+++.+-||.++|+.+..+|..+|.+ .||+|+..|++.++..++.+. ..-.+.+...+|.|.+|+|+|.||+
T Consensus 81 ~kv~n~yteF~eFsrkqIk~~~~~Fk~yDe~--rDgfIdl~ELK~mmEKLgapQTHL~lK~mikeVded~dgklSfrefl 158 (244)
T KOG0041|consen 81 LKVFNVYTEFSEFSRKQIKDAESMFKQYDED--RDGFIDLMELKRMMEKLGAPQTHLGLKNMIKEVDEDFDGKLSFREFL 158 (244)
T ss_pred ccccchhhhhhHHHHHHHHHHHHHHHHhccc--ccccccHHHHHHHHHHhCCchhhHHHHHHHHHhhcccccchhHHHHH
Confidence 3456677888899999999999999999999 999999999999998887654 4446889999999999999999999
Q ss_pred HHHHhhCCCCCc-HHHHHHHHHH--hcCCCCCceeHHHHHHH
Q 027239 109 RALSIFHPNSPI-DDKIEFSFQL--YDLKQQGFIERQEVKQM 147 (226)
Q Consensus 109 ~~~~~~~~~~~~-~~~~~~~F~~--~D~d~~G~I~~~e~~~~ 147 (226)
-++..-...... ...+..+=+. .|....|+.....|..+
T Consensus 159 LIfrkaaagEL~~ds~~~~LAr~~eVDVskeGV~GAknFFeA 200 (244)
T KOG0041|consen 159 LIFRKAAAGELQEDSGLLRLARLSEVDVSKEGVSGAKNFFEA 200 (244)
T ss_pred HHHHHHhccccccchHHHHHHHhcccchhhhhhhhHHHHHHH
Confidence 998764432222 2223333333 78888888888777664
No 58
>PF14658 EF-hand_9: EF-hand domain
Probab=98.53 E-value=5.9e-07 Score=56.70 Aligned_cols=61 Identities=13% Similarity=0.301 Sum_probs=54.3
Q ss_pred HHHHHhcCCCCCceeHHHHHHHHHHHHhhcCC-CCCHHHHHHHHHHHHHHhCCCCC-CcccHHHHHHHHHh
Q 027239 126 FSFQLYDLKQQGFIERQEVKQMVVATLTESGM-NLSDDVIESIIDKTFEEADTKHD-GKIDKEEWRNLVLR 194 (226)
Q Consensus 126 ~~F~~~D~d~~G~I~~~e~~~~l~~~~~~~~~-~~~~~~~~~~~~~~f~~~d~~~d-G~Is~~eF~~~~~~ 194 (226)
.+|..||.++.|.|...++..+|+++ +. ..++.+++++. +..|+++. |.|++++|+..|+.
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra~----~~~~p~e~~Lq~l~----~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRAV----TGRSPEESELQDLI----NELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHHH----cCCCCcHHHHHHHH----HHhCCCCCCceEeHHHHHHHHHH
Confidence 47999999999999999999997776 65 78888888888 89999997 99999999999874
No 59
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=98.50 E-value=2.1e-06 Score=72.26 Aligned_cols=124 Identities=20% Similarity=0.311 Sum_probs=96.0
Q ss_pred hHHHHHHHHHHcCCCCCCccHHHHHHHHHhhCCCCCcHHHHHHHHHHhcCCCCCceeHHHHHHHHHHHHhhcCCCCCHHH
Q 027239 84 SLFADRVFDLFDTKHNGILDFEEFARALSIFHPNSPIDDKIEFSFQLYDLKQQGFIERQEVKQMVVATLTESGMNLSDDV 163 (226)
Q Consensus 84 ~~~~~~lf~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~I~~~e~~~~l~~~~~~~~~~~~~~~ 163 (226)
+..+..+|+.+|.+++|.|+..+....+..+..+....+....+|+..|.|.+|.++..||++.+..
T Consensus 13 ~~r~~~lf~~lD~~~~g~~d~~~l~k~~~~l~~~~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~~------------- 79 (463)
T KOG0036|consen 13 DIRIRCLFKELDSKNDGQVDLDQLEKGLEKLDHPKPNYEAAKMLFSAMDANRDGRVDYSEFKRYLDN------------- 79 (463)
T ss_pred HHHHHHHHHHhccCCCCceeHHHHHHHHHhcCCCCCchHHHHHHHHhcccCcCCcccHHHHHHHHHH-------------
Confidence 3446889999999999999999999999888775566777899999999999999999999998633
Q ss_pred HHHHHHHHHHHhCCCCCCcccHHHHHHHHHhC------hhhhhhh-hccccccccccccccccc
Q 027239 164 IESIIDKTFEEADTKHDGKIDKEEWRNLVLRH------PSLLKNM-TLQYLKDITTTFPSFVFH 220 (226)
Q Consensus 164 ~~~~~~~~f~~~d~~~dG~Is~~eF~~~~~~~------~~l~~~~-~~~~~~~~~~~~~~~~~~ 220 (226)
.+.-+..+|+..|.++||.|+.+|..+++... ....+++ .+.-.+.++..|.+|=.|
T Consensus 80 ~E~~l~~~F~~iD~~hdG~i~~~Ei~~~l~~~gi~l~de~~~k~~e~~d~~g~~~I~~~e~rd~ 143 (463)
T KOG0036|consen 80 KELELYRIFQSIDLEHDGKIDPNEIWRYLKDLGIQLSDEKAAKFFEHMDKDGKATIDLEEWRDH 143 (463)
T ss_pred hHHHHHHHHhhhccccCCccCHHHHHHHHHHhCCccCHHHHHHHHHHhccCCCeeeccHHHHhh
Confidence 22335677899999999999999999988752 1111111 345556666666666444
No 60
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=98.49 E-value=1.2e-06 Score=54.32 Aligned_cols=59 Identities=22% Similarity=0.361 Sum_probs=38.0
Q ss_pred HHHHHHHcCCCCCCccHHHHHHHHHhhCCCCCcHHHHHHHHHHhcCCCCCceeHHHHHHH
Q 027239 88 DRVFDLFDTKHNGILDFEEFARALSIFHPNSPIDDKIEFSFQLYDLKQQGFIERQEVKQM 147 (226)
Q Consensus 88 ~~lf~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~I~~~e~~~~ 147 (226)
..+|..+|.+++|.|++++|..++..... ....+.+..+|+.+|.+++|.|+.++|..+
T Consensus 3 ~~~f~~~d~~~~g~l~~~e~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~ 61 (63)
T cd00051 3 REAFRLFDKDGDGTISADELKAALKSLGE-GLSEEEIDEMIREVDKDGDGKIDFEEFLEL 61 (63)
T ss_pred HHHHHHhCCCCCCcCcHHHHHHHHHHhCC-CCCHHHHHHHHHHhCCCCCCeEeHHHHHHH
Confidence 45566666666677777777666665544 344555666777777766777777766654
No 61
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=98.48 E-value=7.3e-07 Score=60.51 Aligned_cols=66 Identities=29% Similarity=0.460 Sum_probs=52.2
Q ss_pred HHHHHHHHHhcCC--CCCceeHHHHHHHHHHHHhhcCCCCC----HHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHh
Q 027239 122 DKIEFSFQLYDLK--QQGFIERQEVKQMVVATLTESGMNLS----DDVIESIIDKTFEEADTKHDGKIDKEEWRNLVLR 194 (226)
Q Consensus 122 ~~~~~~F~~~D~d--~~G~I~~~e~~~~l~~~~~~~~~~~~----~~~~~~~~~~~f~~~d~~~dG~Is~~eF~~~~~~ 194 (226)
..+...|+.|+.. ++|.|+.+||..++... .+..++ ++++..++ ..+|.+++|.|+|+||+.++..
T Consensus 8 ~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~---~g~~~t~~~~~~~v~~i~----~~~D~d~dG~I~f~eF~~~~~~ 79 (88)
T cd05030 8 ETIINVFHQYSVRKGHPDTLYKKEFKQLVEKE---LPNFLKKEKNQKAIDKIF----EDLDTNQDGQLSFEEFLVLVIK 79 (88)
T ss_pred HHHHHHHHHHhccCCCcccCCHHHHHHHHHHH---hhHhhccCCCHHHHHHHH----HHcCCCCCCcCcHHHHHHHHHH
Confidence 4578889999865 47999999999998543 243444 66766666 8999999999999999998875
No 62
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.48 E-value=1.5e-06 Score=58.70 Aligned_cols=68 Identities=16% Similarity=0.371 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHhhcccCCCCCCccHHHHHHHHhc-----cC-CcchHHHHHHHHHHcCCCCCCccHHHHHHHHHhhC
Q 027239 45 SEIEALYELFKKISSAVIDDGLINKEEFQLALFK-----TN-KKESLFADRVFDLFDTKHNGILDFEEFARALSIFH 115 (226)
Q Consensus 45 ~~i~~l~~~F~~~D~~~~~~G~i~~~ef~~~l~~-----~~-~~~~~~~~~lf~~~d~~~~g~i~~~eF~~~~~~~~ 115 (226)
.-+..+..+|.++..+ ++++++.||..++.. +. ...+..++++++..|.|+||.|+|+||+..+..+.
T Consensus 5 ~ai~~lI~~FhkYaG~---~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l~ 78 (91)
T cd05024 5 HSMEKMMLTFHKFAGE---KNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAGLL 78 (91)
T ss_pred HHHHHHHHHHHHHcCC---CCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHH
Confidence 3467889999999964 789999999998854 11 22455689999999999999999999999987654
No 63
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=98.42 E-value=1.7e-06 Score=58.67 Aligned_cols=70 Identities=26% Similarity=0.360 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHhhcccCCCCCCccHHHHHHHHhc-cCCc-----chHHHHHHHHHHcCCCCCCccHHHHHHHHHhh
Q 027239 45 SEIEALYELFKKISSAVIDDGLINKEEFQLALFK-TNKK-----ESLFADRVFDLFDTKHNGILDFEEFARALSIF 114 (226)
Q Consensus 45 ~~i~~l~~~F~~~D~~~~~~G~i~~~ef~~~l~~-~~~~-----~~~~~~~lf~~~d~~~~g~i~~~eF~~~~~~~ 114 (226)
+-+..+...|..++.+...+|+|+.+||..+|.. .+.. ....+..+|..+|.+++|.|+|+||+..+...
T Consensus 5 ~~i~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~ 80 (88)
T cd05030 5 KAIETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKV 80 (88)
T ss_pred HHHHHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 3478889999999976223789999999998853 2221 15668899999999999999999999988654
No 64
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=98.38 E-value=9.6e-07 Score=74.72 Aligned_cols=121 Identities=20% Similarity=0.325 Sum_probs=85.9
Q ss_pred CCCCccHHHHHHHHhccCCcchHHHHHHHHHHcCCCCCCccHHHHHHHHHhhCCCCC--------------cHHHHHHH-
Q 027239 63 DDGLINKEEFQLALFKTNKKESLFADRVFDLFDTKHNGILDFEEFARALSIFHPNSP--------------IDDKIEFS- 127 (226)
Q Consensus 63 ~~G~i~~~ef~~~l~~~~~~~~~~~~~lf~~~d~~~~g~i~~~eF~~~~~~~~~~~~--------------~~~~~~~~- 127 (226)
.+|.|+..|+.-++--+. .+..-....|.+||.|++|.|+.+||.........+.. ....+..+
T Consensus 212 ~~GLIsfSdYiFLlTlLS-~p~~~F~IAFKMFD~dgnG~IdkeEF~~v~~li~sQ~~~g~~hrd~~tt~~s~~~~~nsaL 290 (489)
T KOG2643|consen 212 ESGLISFSDYIFLLTLLS-IPERNFRIAFKMFDLDGNGEIDKEEFETVQQLIRSQTSVGVRHRDHFTTGNSFKVEVNSAL 290 (489)
T ss_pred CCCeeeHHHHHHHHHHHc-cCcccceeeeeeeecCCCCcccHHHHHHHHHHHHhccccceecccCccccceehhhhhhhH
Confidence 789999999874433333 33333467799999999999999999988754332211 11122222
Q ss_pred -HHHhcCCCCCceeHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhCh
Q 027239 128 -FQLYDLKQQGFIERQEVKQMVVATLTESGMNLSDDVIESIIDKTFEEADTKHDGKIDKEEWRNLVLRHP 196 (226)
Q Consensus 128 -F~~~D~d~~G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~dG~Is~~eF~~~~~~~~ 196 (226)
-..|.++|++.++.++|.+++..+ .++++..=|..+|....|.|+-.+|..++....
T Consensus 291 ~~yFFG~rg~~kLs~deF~~F~e~L------------q~Eil~lEF~~~~~~~~g~Ise~DFA~~lL~~a 348 (489)
T KOG2643|consen 291 LTYFFGKRGNGKLSIDEFLKFQENL------------QEEILELEFERFDKGDSGAISEVDFAELLLAYA 348 (489)
T ss_pred HHHhhccCCCccccHHHHHHHHHHH------------HHHHHHHHHHHhCcccccccCHHHHHHHHHHHc
Confidence 234689999999999999997765 234455557888888889999999998887654
No 65
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=98.36 E-value=2.3e-06 Score=52.38 Aligned_cols=48 Identities=29% Similarity=0.456 Sum_probs=22.0
Q ss_pred CCccHHHHHHHHHhhCCCCCcHHHHHHHHHHhcCCCCCceeHHHHHHH
Q 027239 100 GILDFEEFARALSIFHPNSPIDDKIEFSFQLYDLKQQGFIERQEVKQM 147 (226)
Q Consensus 100 g~i~~~eF~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~I~~~e~~~~ 147 (226)
|.|+.++|..++..+.......+.+..+|..+|.+++|.|+.+||..+
T Consensus 3 G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~ 50 (54)
T PF13833_consen 3 GKITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISM 50 (54)
T ss_dssp SEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHH
T ss_pred CEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHH
Confidence 445555555555333221133333555555555555555555555544
No 66
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.35 E-value=8.4e-07 Score=46.98 Aligned_cols=27 Identities=26% Similarity=0.444 Sum_probs=21.0
Q ss_pred HHHHHHHhcCCCCCceeHHHHHHHHHH
Q 027239 124 IEFSFQLYDLKQQGFIERQEVKQMVVA 150 (226)
Q Consensus 124 ~~~~F~~~D~d~~G~I~~~e~~~~l~~ 150 (226)
++.+|+.||+||+|+|+.+||..+++.
T Consensus 2 ~~~~F~~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 2 LKEAFREFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCCHHHHHHHHHh
Confidence 567888888888888888888887643
No 67
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=98.31 E-value=2.9e-05 Score=66.89 Aligned_cols=151 Identities=17% Similarity=0.288 Sum_probs=106.8
Q ss_pred cCCCHHHHHHHHHHHHhhcccCCCCCCccHHHHHHHHhcc---CCcchHHHHHHHHHHcCCCCCCccHHHHHHHHHhhCC
Q 027239 40 TVFSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKT---NKKESLFADRVFDLFDTKHNGILDFEEFARALSIFHP 116 (226)
Q Consensus 40 ~~~s~~~i~~l~~~F~~~D~~~~~~G~i~~~ef~~~l~~~---~~~~~~~~~~lf~~~d~~~~g~i~~~eF~~~~~~~~~ 116 (226)
+.-.+++++.+.-.|...+.+ +..+++.++|.+....+ ....+..+.-+-...|..+||-|+|+||..+-..+|.
T Consensus 28 kra~~~eLr~if~~~as~e~~--ge~~mt~edFv~~ylgL~~e~~~n~~~v~Lla~iaD~tKDglisf~eF~afe~~lC~ 105 (694)
T KOG0751|consen 28 KRADPKELRSIFLKYASIEKN--GESYMTPEDFVRRYLGLYNESNFNDKIVRLLASIADQTKDGLISFQEFRAFESVLCA 105 (694)
T ss_pred ccCChHHHHHHHHHHhHHhhc--cccccCHHHHHHHHHhhcccccCChHHHHHHHhhhhhcccccccHHHHHHHHhhccC
Confidence 344567788888888888888 88899999998765432 2223444455566678888999999999998777765
Q ss_pred CCCcHHHHHHHHHHhcCCCCCceeHHHHHHHHHHHHhhcC-------------------CCCCHHH--------HHHHHH
Q 027239 117 NSPIDDKIEFSFQLYDLKQQGFIERQEVKQMVVATLTESG-------------------MNLSDDV--------IESIID 169 (226)
Q Consensus 117 ~~~~~~~~~~~F~~~D~d~~G~I~~~e~~~~l~~~~~~~~-------------------~~~~~~~--------~~~~~~ 169 (226)
+ ......+|..||+.++|.++.+++..++....-.-. ..++-.+ ..+-..
T Consensus 106 p---Dal~~~aFqlFDr~~~~~vs~~~~~~if~~t~l~~~~~f~~d~efI~~~Fg~~~~r~~ny~~f~Q~lh~~~~E~~~ 182 (694)
T KOG0751|consen 106 P---DALFEVAFQLFDRLGNGEVSFEDVADIFGQTNLHHHIPFNWDSEFIKLHFGDIRKRHLNYAEFTQFLHEFQLEHAE 182 (694)
T ss_pred c---hHHHHHHHHHhcccCCCceehHHHHHHHhccccccCCCccCCcchHHHHhhhHHHHhccHHHHHHHHHHHHHHHHH
Confidence 3 666889999999999999999999998765411000 0111111 122234
Q ss_pred HHHHHhCCCCCCcccHHHHHHHHHhC
Q 027239 170 KTFEEADTKHDGKIDKEEWRNLVLRH 195 (226)
Q Consensus 170 ~~f~~~d~~~dG~Is~~eF~~~~~~~ 195 (226)
+.|...|..++|.||--+|...|.+.
T Consensus 183 qafr~~d~~~ng~is~Ldfq~imvt~ 208 (694)
T KOG0751|consen 183 QAFREKDKAKNGFISVLDFQDIMVTI 208 (694)
T ss_pred HHHHHhcccCCCeeeeechHhhhhhh
Confidence 56777788888888888888777653
No 68
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=98.19 E-value=3.1e-05 Score=66.75 Aligned_cols=120 Identities=23% Similarity=0.334 Sum_probs=87.3
Q ss_pred CCCCccHHHHHHHHhccCCcchHHHHHHHHHHcCCCCCCccHHHHHHHHHhhCCCC--C---------------------
Q 027239 63 DDGLINKEEFQLALFKTNKKESLFADRVFDLFDTKHNGILDFEEFARALSIFHPNS--P--------------------- 119 (226)
Q Consensus 63 ~~G~i~~~ef~~~l~~~~~~~~~~~~~lf~~~d~~~~g~i~~~eF~~~~~~~~~~~--~--------------------- 119 (226)
+||.|+.+||. ++....+.++.....+|+.||+.++|.++++++..++....-+. +
T Consensus 87 KDglisf~eF~-afe~~lC~pDal~~~aFqlFDr~~~~~vs~~~~~~if~~t~l~~~~~f~~d~efI~~~Fg~~~~r~~n 165 (694)
T KOG0751|consen 87 KDGLISFQEFR-AFESVLCAPDALFEVAFQLFDRLGNGEVSFEDVADIFGQTNLHHHIPFNWDSEFIKLHFGDIRKRHLN 165 (694)
T ss_pred ccccccHHHHH-HHHhhccCchHHHHHHHHHhcccCCCceehHHHHHHHhccccccCCCccCCcchHHHHhhhHHHHhcc
Confidence 88999999998 67777777888888999999999999999999998887532111 0
Q ss_pred -----------cHHHHHHHHHHhcCCCCCceeHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHH
Q 027239 120 -----------IDDKIEFSFQLYDLKQQGFIERQEVKQMVVATLTESGMNLSDDVIESIIDKTFEEADTKHDGKIDKEEW 188 (226)
Q Consensus 120 -----------~~~~~~~~F~~~D~d~~G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~dG~Is~~eF 188 (226)
..+....+|+..|+.++|.|+.-++..++..+ ..++....+++.+- .....+...++|+..|
T Consensus 166 y~~f~Q~lh~~~~E~~~qafr~~d~~~ng~is~Ldfq~imvt~----~~h~lt~~v~~nlv---~vagg~~~H~vSf~yf 238 (694)
T KOG0751|consen 166 YAEFTQFLHEFQLEHAEQAFREKDKAKNGFISVLDFQDIMVTI----RIHLLTPFVEENLV---SVAGGNDSHQVSFSYF 238 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCCCeeeeechHhhhhhh----hhhcCCHHHhhhhh---hhcCCCCccccchHHH
Confidence 23446789999999999999999999997555 45555545444441 3333333445776666
Q ss_pred HH
Q 027239 189 RN 190 (226)
Q Consensus 189 ~~ 190 (226)
..
T Consensus 239 ~a 240 (694)
T KOG0751|consen 239 NA 240 (694)
T ss_pred HH
Confidence 53
No 69
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.18 E-value=4.7e-05 Score=54.92 Aligned_cols=104 Identities=13% Similarity=0.112 Sum_probs=86.6
Q ss_pred HHHHHHHHHHcCCCCCCccHHHHHHHHHhhCCCCCcHHHHHHHHHHhcCC--CCCceeHHHHHHHHHHHHhhcCCCCCHH
Q 027239 85 LFADRVFDLFDTKHNGILDFEEFARALSIFHPNSPIDDKIEFSFQLYDLK--QQGFIERQEVKQMVVATLTESGMNLSDD 162 (226)
Q Consensus 85 ~~~~~lf~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~F~~~D~d--~~G~I~~~e~~~~l~~~~~~~~~~~~~~ 162 (226)
+..+++|..||..++|.|++.+--.+++.+.. .+....+......++.+ +--.|+.++|..+++++.+. ....+-+
T Consensus 11 ~e~ke~F~lfD~~gD~ki~~~q~gdvlRalG~-nPT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~vakn-k~q~t~e 88 (152)
T KOG0030|consen 11 EEFKEAFLLFDRTGDGKISGSQVGDVLRALGQ-NPTNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQVAKN-KDQGTYE 88 (152)
T ss_pred HHHHHHHHHHhccCcccccHHHHHHHHHHhcC-CCcHHHHHHHHcCcccchhhhhhhhHHHHHHHHHHHHhc-cccCcHH
Confidence 45789999999999999999999999988887 47788899899888877 55789999999999887443 4445555
Q ss_pred HHHHHHHHHHHHhCCCCCCcccHHHHHHHHHh
Q 027239 163 VIESIIDKTFEEADTKHDGKIDKEEWRNLVLR 194 (226)
Q Consensus 163 ~~~~~~~~~f~~~d~~~dG~Is~~eF~~~~~~ 194 (226)
++-+-+ +.+|..++|.|...|++..+..
T Consensus 89 dfvegL----rvFDkeg~G~i~~aeLRhvLtt 116 (152)
T KOG0030|consen 89 DFVEGL----RVFDKEGNGTIMGAELRHVLTT 116 (152)
T ss_pred HHHHHH----HhhcccCCcceeHHHHHHHHHH
Confidence 555555 7999999999999999998875
No 70
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.16 E-value=2.3e-05 Score=53.03 Aligned_cols=68 Identities=15% Similarity=0.370 Sum_probs=51.5
Q ss_pred HHHHHHHHhcCCCCCceeHHHHHHHHHHHHhh-cCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhC
Q 027239 123 KIEFSFQLYDLKQQGFIERQEVKQMVVATLTE-SGMNLSDDVIESIIDKTFEEADTKHDGKIDKEEWRNLVLRH 195 (226)
Q Consensus 123 ~~~~~F~~~D~d~~G~I~~~e~~~~l~~~~~~-~~~~~~~~~~~~~~~~~f~~~d~~~dG~Is~~eF~~~~~~~ 195 (226)
.+..+|..|..+ .+.++..||+.++++-+.. ++..-++..++.++ +..|.|+||.|+|.||..++..-
T Consensus 9 ~lI~~FhkYaG~-~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im----~~LD~n~Dg~vdF~EF~~Lv~~l 77 (91)
T cd05024 9 KMMLTFHKFAGE-KNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIM----KDLDDCRDGKVGFQSFFSLIAGL 77 (91)
T ss_pred HHHHHHHHHcCC-CCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHH----HHhCCCCCCcCcHHHHHHHHHHH
Confidence 477789999844 5699999999998665443 23334555555555 89999999999999999888753
No 71
>PF14658 EF-hand_9: EF-hand domain
Probab=98.15 E-value=9.6e-06 Score=51.21 Aligned_cols=60 Identities=18% Similarity=0.300 Sum_probs=44.9
Q ss_pred HHHHHcCCCCCCccHHHHHHHHHhhCCCCCcHHHHHHHHHHhcCCCC-CceeHHHHHHHHH
Q 027239 90 VFDLFDTKHNGILDFEEFARALSIFHPNSPIDDKIEFSFQLYDLKQQ-GFIERQEVKQMVV 149 (226)
Q Consensus 90 lf~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~F~~~D~d~~-G~I~~~e~~~~l~ 149 (226)
.|+.||.++.|.|.-.+++.++.....+.+.+.++..+.+.+|.+|. |.|+++.|..+|+
T Consensus 3 ~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~ 63 (66)
T PF14658_consen 3 AFDAFDTQKTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMR 63 (66)
T ss_pred chhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHH
Confidence 57777777777777777777777777656677777777777777776 7777777777753
No 72
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=98.15 E-value=9.4e-06 Score=62.03 Aligned_cols=65 Identities=28% Similarity=0.453 Sum_probs=49.0
Q ss_pred HHHHHHHHHhcCCCCCceeHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHh
Q 027239 122 DKIEFSFQLYDLKQQGFIERQEVKQMVVATLTESGMNLSDDVIESIIDKTFEEADTKHDGKIDKEEWRNLVLR 194 (226)
Q Consensus 122 ~~~~~~F~~~D~d~~G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~dG~Is~~eF~~~~~~ 194 (226)
..+..+|+.||.+.||+|+..|++.+|.++ |.+-+.--...++ ..+|.|.||+|||.||+-..+.
T Consensus 99 k~~~~~Fk~yDe~rDgfIdl~ELK~mmEKL----gapQTHL~lK~mi----keVded~dgklSfreflLIfrk 163 (244)
T KOG0041|consen 99 KDAESMFKQYDEDRDGFIDLMELKRMMEKL----GAPQTHLGLKNMI----KEVDEDFDGKLSFREFLLIFRK 163 (244)
T ss_pred HHHHHHHHHhcccccccccHHHHHHHHHHh----CCchhhHHHHHHH----HHhhcccccchhHHHHHHHHHH
Confidence 446778888888888888888888886665 6555554555555 7888888888888888866654
No 73
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.12 E-value=3.3e-05 Score=56.65 Aligned_cols=97 Identities=23% Similarity=0.337 Sum_probs=79.2
Q ss_pred HHHHHHHHcCCCCCCccHHHHHHHHHhhCCCCCcHHHHHHHHHHhcCCCCCceeHHHHHHHHHHHHhhcCCCCCHHHHHH
Q 027239 87 ADRVFDLFDTKHNGILDFEEFARALSIFHPNSPIDDKIEFSFQLYDLKQQGFIERQEVKQMVVATLTESGMNLSDDVIES 166 (226)
Q Consensus 87 ~~~lf~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~ 166 (226)
.++.|...|.|++|.|+.+++...++.+.+. ..++.+..+++. ..|.|+.--|..++..- ++-..-++
T Consensus 34 fKEAF~~mDqnrDG~IdkeDL~d~~aSlGk~-~~d~elDaM~~E----a~gPINft~FLTmfGek-------L~gtdpe~ 101 (171)
T KOG0031|consen 34 FKEAFNLMDQNRDGFIDKEDLRDMLASLGKI-ASDEELDAMMKE----APGPINFTVFLTMFGEK-------LNGTDPEE 101 (171)
T ss_pred HHHHHHHHhccCCCcccHHHHHHHHHHcCCC-CCHHHHHHHHHh----CCCCeeHHHHHHHHHHH-------hcCCCHHH
Confidence 4788999999999999999999999999885 677778888874 47899999888876333 32223355
Q ss_pred HHHHHHHHhCCCCCCcccHHHHHHHHHhC
Q 027239 167 IIDKTFEEADTKHDGKIDKEEWRNLVLRH 195 (226)
Q Consensus 167 ~~~~~f~~~d~~~dG~Is~~eF~~~~~~~ 195 (226)
.+..+|..+|.++.|.|.-+.++.++...
T Consensus 102 ~I~~AF~~FD~~~~G~I~~d~lre~Ltt~ 130 (171)
T KOG0031|consen 102 VILNAFKTFDDEGSGKIDEDYLRELLTTM 130 (171)
T ss_pred HHHHHHHhcCccCCCccCHHHHHHHHHHh
Confidence 57788899999999999999999999763
No 74
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=98.11 E-value=2.2e-05 Score=67.36 Aligned_cols=104 Identities=24% Similarity=0.332 Sum_probs=68.2
Q ss_pred CccHHHHHHHHhccCCcchHHHHHHHHHHcCCCCCCccHHHHHHHH-HhhCCCCCcHHHHHHHHHHhcCCCCCceeHHHH
Q 027239 66 LINKEEFQLALFKTNKKESLFADRVFDLFDTKHNGILDFEEFARAL-SIFHPNSPIDDKIEFSFQLYDLKQQGFIERQEV 144 (226)
Q Consensus 66 ~i~~~ef~~~l~~~~~~~~~~~~~lf~~~d~~~~g~i~~~eF~~~~-~~~~~~~~~~~~~~~~F~~~D~d~~G~I~~~e~ 144 (226)
.++..+|+..+.......+. ..+-.+.|..+ ....++++... ............++.+|+.+|.+|+|.|+.+||
T Consensus 281 ~~~e~~f~~~~~~~~ma~ek-l~egi~~F~~d---~~~L~~~i~~~~~~~~~~~~~~~~l~~aF~~~D~dgdG~Is~~E~ 356 (391)
T PRK12309 281 HMDRATFDKMHAEDRMASEK-LDEGIKGFSKA---LETLEKLLAHRLARLEGGEAFTHAAQEIFRLYDLDGDGFITREEW 356 (391)
T ss_pred CCCHHHHHHHhccCchHHHH-HHHHHHHHHHH---HHHHHHHHHHHHHHhhccChhhHHHHHHHHHhCCCCCCcCcHHHH
Confidence 35677777555322211122 22233444332 23445555422 224444567788999999999999999999998
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHh
Q 027239 145 KQMVVATLTESGMNLSDDVIESIIDKTFEEADTKHDGKIDKEEWRNLVLR 194 (226)
Q Consensus 145 ~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~dG~Is~~eF~~~~~~ 194 (226)
.. ...+|+.+|.|+||.|+++||...+..
T Consensus 357 ~~---------------------~~~~F~~~D~d~DG~Is~eEf~~~~~~ 385 (391)
T PRK12309 357 LG---------------------SDAVFDALDLNHDGKITPEEMRAGLGA 385 (391)
T ss_pred HH---------------------HHHHHHHhCCCCCCCCcHHHHHHHHHH
Confidence 32 244569999999999999999998875
No 75
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=98.10 E-value=2.2e-05 Score=57.06 Aligned_cols=94 Identities=15% Similarity=0.281 Sum_probs=72.7
Q ss_pred HHhhcccCCCCCCccHHHHHHHHhccC--CcchHHHHHHHHHHcCCCCCCccHHHHHHHHHhhCCCCCcHHHH----HHH
Q 027239 54 FKKISSAVIDDGLINKEEFQLALFKTN--KKESLFADRVFDLFDTKHNGILDFEEFARALSIFHPNSPIDDKI----EFS 127 (226)
Q Consensus 54 F~~~D~~~~~~G~i~~~ef~~~l~~~~--~~~~~~~~~lf~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~~----~~~ 127 (226)
...+..+ +.|.++.++|..++.... .+.+..+.-.|+.+|-|+++.|.-.+....+..+.+.....+++ ..+
T Consensus 77 ~e~FSeD--G~GnlsfddFlDmfSV~sE~APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~eLs~eEv~~i~ekv 154 (189)
T KOG0038|consen 77 CEVFSED--GRGNLSFDDFLDMFSVFSEMAPRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTSLTRDELSDEEVELICEKV 154 (189)
T ss_pred HHHhccC--CCCcccHHHHHHHHHHHHhhChHHhhhhheeEEeecCCCCcccHHHHHHHHHHHhhccCCHHHHHHHHHHH
Confidence 3445556 999999999999874432 12233355679999999999999999999999988766666654 445
Q ss_pred HHHhcCCCCCceeHHHHHHHHH
Q 027239 128 FQLYDLKQQGFIERQEVKQMVV 149 (226)
Q Consensus 128 F~~~D~d~~G~I~~~e~~~~l~ 149 (226)
...-|.||+|.|+..||.+++.
T Consensus 155 ieEAD~DgDgkl~~~eFe~~i~ 176 (189)
T KOG0038|consen 155 IEEADLDGDGKLSFAEFEHVIL 176 (189)
T ss_pred HHHhcCCCCCcccHHHHHHHHH
Confidence 5667999999999999999863
No 76
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.06 E-value=5.9e-06 Score=43.71 Aligned_cols=27 Identities=33% Similarity=0.619 Sum_probs=19.8
Q ss_pred HHHHHHHHcCCCCCCccHHHHHHHHHh
Q 027239 87 ADRVFDLFDTKHNGILDFEEFARALSI 113 (226)
Q Consensus 87 ~~~lf~~~d~~~~g~i~~~eF~~~~~~ 113 (226)
++.+|+.+|.|++|.|+++||..++..
T Consensus 2 ~~~~F~~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 2 LKEAFREFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCCHHHHHHHHHh
Confidence 466777777777777777777777654
No 77
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=98.05 E-value=1.1e-05 Score=56.39 Aligned_cols=70 Identities=26% Similarity=0.451 Sum_probs=57.5
Q ss_pred CCCHHHHHHHHHHHHhhcccCCCCCCccHHHHHHHHhccCCcchHHHHHHHHHHcCCCCCCccHHHHHHHHHhh
Q 027239 41 VFSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTNKKESLFADRVFDLFDTKHNGILDFEEFARALSIF 114 (226)
Q Consensus 41 ~~s~~~i~~l~~~F~~~D~~~~~~G~i~~~ef~~~l~~~~~~~~~~~~~lf~~~d~~~~g~i~~~eF~~~~~~~ 114 (226)
.++++|.......|..++. ++|.|+-++...++...+... .....|+...|.+++|.++++||+.++...
T Consensus 3 ~ls~~e~~~y~~~F~~l~~---~~g~isg~~a~~~f~~S~L~~-~~L~~IW~LaD~~~dG~L~~~EF~iAm~Li 72 (104)
T PF12763_consen 3 KLSPEEKQKYDQIFQSLDP---QDGKISGDQAREFFMKSGLPR-DVLAQIWNLADIDNDGKLDFEEFAIAMHLI 72 (104)
T ss_dssp --SCCHHHHHHHHHHCTSS---STTEEEHHHHHHHHHHTTSSH-HHHHHHHHHH-SSSSSEEEHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCC---CCCeEeHHHHHHHHHHcCCCH-HHHHHHHhhhcCCCCCcCCHHHHHHHHHHH
Confidence 4677889999999999985 589999999998887776554 446899999999999999999999988643
No 78
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=97.95 E-value=1.6e-05 Score=42.73 Aligned_cols=27 Identities=22% Similarity=0.636 Sum_probs=23.2
Q ss_pred HHHHHHHHhcCCCCCceeHHHHHHHHH
Q 027239 123 KIEFSFQLYDLKQQGFIERQEVKQMVV 149 (226)
Q Consensus 123 ~~~~~F~~~D~d~~G~I~~~e~~~~l~ 149 (226)
+++.+|+.||.+++|.|+.+||..++.
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~ 27 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILR 27 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHH
Confidence 368899999999999999999999975
No 79
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=97.86 E-value=0.00052 Score=62.27 Aligned_cols=172 Identities=15% Similarity=0.235 Sum_probs=127.2
Q ss_pred CCCHHHHHHHHHHHHhhcccCCCCCCccHHHHHHHHhccCCc-chHHHHHHHHHHcCCCCCCccHHHHHHHHHhhCCCCC
Q 027239 41 VFSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTNKK-ESLFADRVFDLFDTKHNGILDFEEFARALSIFHPNSP 119 (226)
Q Consensus 41 ~~s~~~i~~l~~~F~~~D~~~~~~G~i~~~ef~~~l~~~~~~-~~~~~~~lf~~~d~~~~g~i~~~eF~~~~~~~~~~~~ 119 (226)
....+.-.-+..+|+..|.+ ++|.++..+...++...... ...++.++|+..+..+++.+...+|..+....... +
T Consensus 129 ~~~~~~~~wi~~~~~~ad~~--~~~~~~~~~~~~~~~~~n~~l~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~~~r-p 205 (746)
T KOG0169|consen 129 RQRSRREHWIHSIFQEADKN--KNGHMSFDEVLDLLKQLNVQLSESKARRLFKESDNSQTGKLEEEEFVKFRKELTKR-P 205 (746)
T ss_pred hhcchHHHHHHHHHHHHccc--cccccchhhHHHHHHHHHHhhhHHHHHHHHHHHHhhccceehHHHHHHHHHhhccC-c
Confidence 34444556788999999999 99999999988887664433 34567889999988899999999999988776653 2
Q ss_pred cHHHHHHHHHHhcCCCCCceeHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhC-hhh
Q 027239 120 IDDKIEFSFQLYDLKQQGFIERQEVKQMVVATLTESGMNLSDDVIESIIDKTFEEADTKHDGKIDKEEWRNLVLRH-PSL 198 (226)
Q Consensus 120 ~~~~~~~~F~~~D~d~~G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~dG~Is~~eF~~~~~~~-~~l 198 (226)
.+..+|..+-.+ .++++.+++..++... .-..+.+.+.++++++..=..-..-..+.++++.|..+|..- -+.
T Consensus 206 ---ev~~~f~~~s~~-~~~ls~~~L~~Fl~~~--q~e~~~~~~~ae~ii~~~e~~k~~~~~~~l~ldgF~~yL~S~~~~~ 279 (746)
T KOG0169|consen 206 ---EVYFLFVQYSHG-KEYLSTDDLLRFLEEE--QGEDGATLDEAEEIIERYEPSKEFRRHGLLSLDGFTRYLFSPDCNP 279 (746)
T ss_pred ---hHHHHHHHHhCC-CCccCHHHHHHHHHHh--cccccccHHHHHHHHHHhhhhhhccccceecHHHHHHHhcCccCCC
Confidence 588888888766 7899999999997664 223567778888888432222223345679999999999863 245
Q ss_pred hhhhhccccccccccc-ccccccc
Q 027239 199 LKNMTLQYLKDITTTF-PSFVFHS 221 (226)
Q Consensus 199 ~~~~~~~~~~~~~~~~-~~~~~~~ 221 (226)
+...+.+-..+|.+-. -+||+-+
T Consensus 280 fdp~~~~V~qDM~qPLsHYFI~SS 303 (746)
T KOG0169|consen 280 FDPIHRKVHQDMDQPLSHYFISSS 303 (746)
T ss_pred CCcccchhhhcccCcchhheEecc
Confidence 5566777777888876 5666544
No 80
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=97.75 E-value=5.2e-05 Score=38.58 Aligned_cols=24 Identities=25% Similarity=0.461 Sum_probs=17.8
Q ss_pred HHHHHHHhcCCCCCceeHHHHHHH
Q 027239 124 IEFSFQLYDLKQQGFIERQEVKQM 147 (226)
Q Consensus 124 ~~~~F~~~D~d~~G~I~~~e~~~~ 147 (226)
++.+|+.+|.|++|.|+.+|+..+
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~~ 24 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQRL 24 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHHH
Confidence 345777888888888888887765
No 81
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=97.67 E-value=6.8e-05 Score=38.15 Aligned_cols=24 Identities=46% Similarity=0.718 Sum_probs=21.1
Q ss_pred HHHHHHhCCCCCCcccHHHHHHHH
Q 027239 169 DKTFEEADTKHDGKIDKEEWRNLV 192 (226)
Q Consensus 169 ~~~f~~~d~~~dG~Is~~eF~~~~ 192 (226)
+.+|+.+|.|+||.|+++||.+++
T Consensus 2 ~~~F~~~D~d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 2 KDAFQQFDTDGDGKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHHTTTSSSEEEHHHHHHHH
T ss_pred HHHHHHHcCCCCCcCCHHHHHHHC
Confidence 456799999999999999999864
No 82
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=97.66 E-value=0.00018 Score=62.61 Aligned_cols=76 Identities=18% Similarity=0.268 Sum_probs=64.9
Q ss_pred hhcCCCHHHHHHHHHHHHhhcccCCCCCCccHHHHHHHHhccCCcc----hHHHHHHHHHHcCCCCCCccHHHHHHHHHh
Q 027239 38 RETVFSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTNKKE----SLFADRVFDLFDTKHNGILDFEEFARALSI 113 (226)
Q Consensus 38 ~~~~~s~~~i~~l~~~F~~~D~~~~~~G~i~~~ef~~~l~~~~~~~----~~~~~~lf~~~d~~~~g~i~~~eF~~~~~~ 113 (226)
..+.||.+|++.+.+.|...| + ++|+|+..++..++....... ...++.+....+.|.+|.|+|++|+.++..
T Consensus 9 ~~~~~tq~El~~l~~kF~~~d-~--~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~ 85 (627)
T KOG0046|consen 9 LQSQLTQEELRELKEKFNKLD-D--QKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIFLN 85 (627)
T ss_pred hcccccHHHHHHHHHHHHhhc-C--CCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHHHHh
Confidence 567899999999999999999 7 899999999999987644333 566888999999999999999999997755
Q ss_pred hCC
Q 027239 114 FHP 116 (226)
Q Consensus 114 ~~~ 116 (226)
+..
T Consensus 86 l~s 88 (627)
T KOG0046|consen 86 LKS 88 (627)
T ss_pred hhh
Confidence 443
No 83
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=97.64 E-value=0.00018 Score=61.89 Aligned_cols=54 Identities=26% Similarity=0.433 Sum_probs=47.8
Q ss_pred hHHHHHHHHHHcCCCCCCccHHHHHHHHHhhCCCCCcHHHHHHHHHHhcCCCCCceeHHHHHHHHHHH
Q 027239 84 SLFADRVFDLFDTKHNGILDFEEFARALSIFHPNSPIDDKIEFSFQLYDLKQQGFIERQEVKQMVVAT 151 (226)
Q Consensus 84 ~~~~~~lf~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~I~~~e~~~~l~~~ 151 (226)
...+..+|..+|.+++|.|+.+||+. ...+|+.+|.|++|.|+.+||..+++..
T Consensus 333 ~~~l~~aF~~~D~dgdG~Is~~E~~~--------------~~~~F~~~D~d~DG~Is~eEf~~~~~~~ 386 (391)
T PRK12309 333 THAAQEIFRLYDLDGDGFITREEWLG--------------SDAVFDALDLNHDGKITPEEMRAGLGAA 386 (391)
T ss_pred hHHHHHHHHHhCCCCCCcCcHHHHHH--------------HHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 45678899999999999999999952 4678999999999999999999997665
No 84
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=97.64 E-value=0.00038 Score=48.59 Aligned_cols=65 Identities=29% Similarity=0.397 Sum_probs=52.1
Q ss_pred CcHHHHHHHHHHhcCCCCCceeHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHh
Q 027239 119 PIDDKIEFSFQLYDLKQQGFIERQEVKQMVVATLTESGMNLSDDVIESIIDKTFEEADTKHDGKIDKEEWRNLVLR 194 (226)
Q Consensus 119 ~~~~~~~~~F~~~D~d~~G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~dG~Is~~eF~~~~~~ 194 (226)
...++...+|+..|. ++|.|+.++...++... .++.+.+..++ ...|.+++|+++++||.-+|.-
T Consensus 7 ~e~~~y~~~F~~l~~-~~g~isg~~a~~~f~~S------~L~~~~L~~IW----~LaD~~~dG~L~~~EF~iAm~L 71 (104)
T PF12763_consen 7 EEKQKYDQIFQSLDP-QDGKISGDQAREFFMKS------GLPRDVLAQIW----NLADIDNDGKLDFEEFAIAMHL 71 (104)
T ss_dssp CHHHHHHHHHHCTSS-STTEEEHHHHHHHHHHT------TSSHHHHHHHH----HHH-SSSSSEEEHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCC-CCCeEeHHHHHHHHHHc------CCCHHHHHHHH----hhhcCCCCCcCCHHHHHHHHHH
Confidence 345678899998885 68999999999986543 67777766666 8999999999999999988874
No 85
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.61 E-value=0.00027 Score=49.33 Aligned_cols=66 Identities=27% Similarity=0.436 Sum_probs=53.2
Q ss_pred HHHHHhcCCCCCceeHHHHHHHHHHHHh--hcC----CCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHH
Q 027239 126 FSFQLYDLKQQGFIERQEVKQMVVATLT--ESG----MNLSDDVIESIIDKTFEEADTKHDGKIDKEEWRNL 191 (226)
Q Consensus 126 ~~F~~~D~d~~G~I~~~e~~~~l~~~~~--~~~----~~~~~~~~~~~~~~~f~~~d~~~dG~Is~~eF~~~ 191 (226)
.-|++.|-|++|.|+--|+.+++..... ..| +-.++.+.+.++..+.+.-|.|+||.|+|-||++.
T Consensus 71 HYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK~ 142 (144)
T KOG4065|consen 71 HYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEFLKR 142 (144)
T ss_pred hhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHHHhh
Confidence 4577888888888888888888777644 222 34577899999999999999999999999999874
No 86
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=97.56 E-value=0.00033 Score=55.43 Aligned_cols=134 Identities=19% Similarity=0.229 Sum_probs=87.9
Q ss_pred HHHHHHHhhcccCCCCCCccHHHHHHHHhccCC--cchHHHHHHHHHHcCCCCCCccHHHHHHHHHhhC-C-C-CC----
Q 027239 49 ALYELFKKISSAVIDDGLINKEEFQLALFKTNK--KESLFADRVFDLFDTKHNGILDFEEFARALSIFH-P-N-SP---- 119 (226)
Q Consensus 49 ~l~~~F~~~D~~~~~~G~i~~~ef~~~l~~~~~--~~~~~~~~lf~~~d~~~~g~i~~~eF~~~~~~~~-~-~-~~---- 119 (226)
.+.....+.|..| .+-.++.+||..+|..... -...+++.++..+|.|++..++-.+|+...-... . + .+
T Consensus 199 nlkdRwyqaDspp-adlllteeEflsFLHPEhSrgmLrfmVkeivrdlDqdgDkqlSvpeFislpvGTVenqqgqdiddn 277 (362)
T KOG4251|consen 199 NLKDRWYQADSPP-ADLLLTEEEFLSFLHPEHSRGMLRFMVKEIVRDLDQDGDKQLSVPEFISLPVGTVENQQGQDIDDN 277 (362)
T ss_pred hhhhhhccccCch-hhhhhhHHHHHHHcChHhhhhhHHHHHHHHHHHhccCCCeeecchhhhcCCCcchhhhhccchHHH
Confidence 3445555555432 4556777999877633211 1234578899999999999999999998653211 1 0 11
Q ss_pred -cHHHHHHHHHHhcCCCCCceeHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHH
Q 027239 120 -IDDKIEFSFQLYDLKQQGFIERQEVKQMVVATLTESGMNLSDDVIESIIDKTFEEADTKHDGKIDKEEWRNL 191 (226)
Q Consensus 120 -~~~~~~~~F~~~D~d~~G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~dG~Is~~eF~~~ 191 (226)
.+.+.+..=..+|.+++|.+|.+|+...+... +....-.++..++ ...|.+++.+++.++.+..
T Consensus 278 wvkdRkkEFeElIDsNhDGivTaeELe~y~dP~----n~~~alne~~~~m----a~~d~n~~~~Ls~eell~r 342 (362)
T KOG4251|consen 278 WVKDRKKEFEELIDSNHDGIVTAEELEDYVDPQ----NFRLALNEVNDIM----ALTDANNDEKLSLEELLER 342 (362)
T ss_pred HHHHHHHHHHHHhhcCCccceeHHHHHhhcCch----hhhhhHHHHHHHH----hhhccCCCcccCHHHHHHH
Confidence 11223333346799999999999999984322 4444444554445 7889999999999998753
No 87
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=97.56 E-value=7.6e-05 Score=53.00 Aligned_cols=67 Identities=13% Similarity=0.214 Sum_probs=44.3
Q ss_pred cCCCHHHHHHHHHHHHhhcccCCCCCCccHHHHHHHHhccCCcchHHHHHHHHHHcCCCCCCccHHHHHH
Q 027239 40 TVFSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTNKKESLFADRVFDLFDTKHNGILDFEEFAR 109 (226)
Q Consensus 40 ~~~s~~~i~~l~~~F~~~D~~~~~~G~i~~~ef~~~l~~~~~~~~~~~~~lf~~~d~~~~g~i~~~eF~~ 109 (226)
..........+.-.|..+|.+ +||.|+..|+..+ ...-.+...=++.+++.+|.|++|.|+..||..
T Consensus 46 ~~~~~~~~~~~~W~F~~LD~n--~d~~L~~~El~~l-~~~l~~~e~C~~~F~~~CD~n~d~~Is~~EW~~ 112 (113)
T PF10591_consen 46 SSSYSECKRVVHWKFCQLDRN--KDGVLDRSELKPL-RRPLMPPEHCARPFFRSCDVNKDGKISLDEWCN 112 (113)
T ss_dssp HHTGGGGHHHHHHHHHHH--T---SSEE-TTTTGGG-GSTTSTTGGGHHHHHHHH-TT-SSSEEHHHHHH
T ss_pred ccchhhhhhhhhhhHhhhcCC--CCCccCHHHHHHH-HHHHhhhHHHHHHHHHHcCCCCCCCCCHHHHcc
Confidence 344555667788889999998 9999999998843 332234444467888899999999999998865
No 88
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=97.42 E-value=0.00019 Score=38.49 Aligned_cols=26 Identities=38% Similarity=0.520 Sum_probs=15.2
Q ss_pred HHHHHHhhcccCCCCCCccHHHHHHHHh
Q 027239 50 LYELFKKISSAVIDDGLINKEEFQLALF 77 (226)
Q Consensus 50 l~~~F~~~D~~~~~~G~i~~~ef~~~l~ 77 (226)
++.+|..+|.+ ++|+|+.+||..+|.
T Consensus 2 l~~~F~~~D~d--~dG~I~~~el~~~l~ 27 (31)
T PF13405_consen 2 LREAFKMFDKD--GDGFIDFEELRAILR 27 (31)
T ss_dssp HHHHHHHH-TT--SSSEEEHHHHHHHHH
T ss_pred HHHHHHHHCCC--CCCcCcHHHHHHHHH
Confidence 45566666666 666666666665554
No 89
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=97.38 E-value=0.0018 Score=62.65 Aligned_cols=99 Identities=23% Similarity=0.358 Sum_probs=75.8
Q ss_pred HHHHHHHHcCCCCCCccHHHHHHHHHhhCCCCC------cHHHHHHHHHHhcCCCCCceeHHHHHHHHHHHHhh-cCCCC
Q 027239 87 ADRVFDLFDTKHNGILDFEEFARALSIFHPNSP------IDDKIEFSFQLYDLKQQGFIERQEVKQMVVATLTE-SGMNL 159 (226)
Q Consensus 87 ~~~lf~~~d~~~~g~i~~~eF~~~~~~~~~~~~------~~~~~~~~F~~~D~d~~G~I~~~e~~~~l~~~~~~-~~~~~ 159 (226)
..-+|+-||.+.+|.+++.+|..++....+..+ ++..+..+....|++.+|+|+..+...+| .+. ...-.
T Consensus 2255 Fs~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afm---i~~ETeNI~ 2331 (2399)
T KOG0040|consen 2255 FSMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFM---ISKETENIL 2331 (2399)
T ss_pred HHHHHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHH---Hhccccccc
Confidence 366899999999999999999999998776432 33479999999999999999999999987 333 33445
Q ss_pred CHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHH
Q 027239 160 SDDVIESIIDKTFEEADTKHDGKIDKEEWRNLVL 193 (226)
Q Consensus 160 ~~~~~~~~~~~~f~~~d~~~dG~Is~~eF~~~~~ 193 (226)
+.++++..+ +..+. +..+|+-++....|.
T Consensus 2332 s~~eIE~Af----raL~a-~~~yvtke~~~~~lt 2360 (2399)
T KOG0040|consen 2332 SSEEIEDAF----RALDA-GKPYVTKEELYQNLT 2360 (2399)
T ss_pred chHHHHHHH----HHhhc-CCccccHHHHHhcCC
Confidence 556665555 78887 556787777754444
No 90
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=97.32 E-value=0.00078 Score=40.19 Aligned_cols=47 Identities=23% Similarity=0.304 Sum_probs=26.4
Q ss_pred ccHHHHHHHHhccCCc-chHHHHHHHHHHcCCCCCCccHHHHHHHHHh
Q 027239 67 INKEEFQLALFKTNKK-ESLFADRVFDLFDTKHNGILDFEEFARALSI 113 (226)
Q Consensus 67 i~~~ef~~~l~~~~~~-~~~~~~~lf~~~d~~~~g~i~~~eF~~~~~~ 113 (226)
|+..|+..+|+..... .+.++..+|+.+|.+++|.+..+||..++..
T Consensus 2 msf~Evk~lLk~~NI~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~ 49 (51)
T PF14788_consen 2 MSFKEVKKLLKMMNIEMDDEYARQLFQECDKSQSGRLEGEEFEEFYKR 49 (51)
T ss_dssp BEHHHHHHHHHHTT----HHHHHHHHHHH-SSSSSEBEHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHccCcCHHHHHHHHHHhcccCCCCccHHHHHHHHHH
Confidence 5566666666554433 3455666666666666666666666666543
No 91
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=97.28 E-value=0.0012 Score=39.34 Aligned_cols=48 Identities=23% Similarity=0.530 Sum_probs=34.9
Q ss_pred eeHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHh
Q 027239 139 IERQEVKQMVVATLTESGMNLSDDVIESIIDKTFEEADTKHDGKIDKEEWRNLVLR 194 (226)
Q Consensus 139 I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~dG~Is~~eF~~~~~~ 194 (226)
++..|++++++.+ +..++++-+. .+|+..|.+++|.+.-+||..++..
T Consensus 2 msf~Evk~lLk~~----NI~~~~~yA~----~LFq~~D~s~~g~Le~~Ef~~Fy~~ 49 (51)
T PF14788_consen 2 MSFKEVKKLLKMM----NIEMDDEYAR----QLFQECDKSQSGRLEGEEFEEFYKR 49 (51)
T ss_dssp BEHHHHHHHHHHT----T----HHHHH----HHHHHH-SSSSSEBEHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH----ccCcCHHHHH----HHHHHhcccCCCCccHHHHHHHHHH
Confidence 6788999995554 8889876654 4559999999999999999998764
No 92
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=97.27 E-value=0.0019 Score=55.54 Aligned_cols=135 Identities=19% Similarity=0.375 Sum_probs=89.0
Q ss_pred HHHHHHHHHhhcccCCCCCCccHHHHHHHHhccC-Ccc-------hH--------HHHHHHHHHcCCCCCCccHHHHHHH
Q 027239 47 IEALYELFKKISSAVIDDGLINKEEFQLALFKTN-KKE-------SL--------FADRVFDLFDTKHNGILDFEEFARA 110 (226)
Q Consensus 47 i~~l~~~F~~~D~~~~~~G~i~~~ef~~~l~~~~-~~~-------~~--------~~~~lf~~~d~~~~g~i~~~eF~~~ 110 (226)
...+-+.+..++.. +.|++...+|...|..+- ..+ +. -+.++|=.++....|.|+..+.+..
T Consensus 173 ~t~~~~~v~~l~~~--~~~yl~q~df~~~Lqeli~Thpl~~l~~~pEf~~~Y~~tvi~rIFy~~nrs~tG~iti~el~~s 250 (493)
T KOG2562|consen 173 HTRLEQFVNLLIQA--GCSYLRQDDFKPYLQELIATHPLEFLDEEPEFQERYAETVIQRIFYYLNRSRTGRITIQELLRS 250 (493)
T ss_pred HHHHHHHHHHHhcc--CccceeccccHHHHHHHHhcCCchhhccChhHHHHHHHHHhhhhheeeCCccCCceeHHHHHHh
Confidence 34555677788887 899999999888775421 111 11 1567777889999999999986543
Q ss_pred -----HHhhCCCCC--------cHHHHHHH---HHHhcCCCCCceeHHHHHHHHHHHHhhcCCC-CCHHHHHHHHHHHHH
Q 027239 111 -----LSIFHPNSP--------IDDKIEFS---FQLYDLKQQGFIERQEVKQMVVATLTESGMN-LSDDVIESIIDKTFE 173 (226)
Q Consensus 111 -----~~~~~~~~~--------~~~~~~~~---F~~~D~d~~G~I~~~e~~~~l~~~~~~~~~~-~~~~~~~~~~~~~f~ 173 (226)
+........ .-+....+ |-.+|+|++|.|+.+++... +.+ ++ ..+++++|.
T Consensus 251 nll~~l~~l~eEed~nq~~~~FS~e~f~viy~kFweLD~Dhd~lidk~~L~ry--------~d~tlt----~~ivdRIFs 318 (493)
T KOG2562|consen 251 NLLDALLELDEEEDINQVTRYFSYEHFYVIYCKFWELDTDHDGLIDKEDLKRY--------GDHTLT----ERIVDRIFS 318 (493)
T ss_pred HHHHHHHHHHHHhhhhhhhhheeHHHHHHHHHHHhhhccccccccCHHHHHHH--------hccchh----hHHHHHHHh
Confidence 322221111 11122333 66789999999999999887 322 33 245666777
Q ss_pred H----hCCCCCCcccHHHHHHHHHhC
Q 027239 174 E----ADTKHDGKIDKEEWRNLVLRH 195 (226)
Q Consensus 174 ~----~d~~~dG~Is~~eF~~~~~~~ 195 (226)
. .-...+|+++|++|+.++...
T Consensus 319 ~v~r~~~~~~eGrmdykdFv~FilA~ 344 (493)
T KOG2562|consen 319 QVPRGFTVKVEGRMDYKDFVDFILAE 344 (493)
T ss_pred hccccceeeecCcccHHHHHHHHHHh
Confidence 3 334568999999999999753
No 93
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.20 E-value=0.0047 Score=56.31 Aligned_cols=140 Identities=17% Similarity=0.299 Sum_probs=105.1
Q ss_pred cCCCHHHHHHHHHHHHhhcccCCCCCCccHHHHHHHHhccCCcchHHHHHHHHHHcCCCCCCccHHHHHHHHHhhC----
Q 027239 40 TVFSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTNKKESLFADRVFDLFDTKHNGILDFEEFARALSIFH---- 115 (226)
Q Consensus 40 ~~~s~~~i~~l~~~F~~~D~~~~~~G~i~~~ef~~~l~~~~~~~~~~~~~lf~~~d~~~~g~i~~~eF~~~~~~~~---- 115 (226)
..+|.++...-...|..+-+ +.|+|+-.+-+.++...+.+.. .+..|+..-|.|+||.++..||-.+|....
T Consensus 8 WavT~~Er~K~~~qF~~Lkp---~~gfitg~qArnfflqS~LP~~-VLaqIWALsDldkDGrmdi~EfSIAmkLi~lkLq 83 (1118)
T KOG1029|consen 8 WAVTDEERQKHDAQFGQLKP---GQGFITGDQARNFFLQSGLPTP-VLAQIWALSDLDKDGRMDIREFSIAMKLIKLKLQ 83 (1118)
T ss_pred cccchHHHHHHHHHHhccCC---CCCccchHhhhhhHHhcCCChH-HHHHHHHhhhcCccccchHHHHHHHHHHHHHHhc
Confidence 35677777778888888876 6889998888887766665543 357788888999999999999887765320
Q ss_pred --------CC-------------------C--------------------------------------------------
Q 027239 116 --------PN-------------------S-------------------------------------------------- 118 (226)
Q Consensus 116 --------~~-------------------~-------------------------------------------------- 118 (226)
+. +
T Consensus 84 G~~lP~~LPPsll~~~~~~~p~~~p~fg~Gsls~~qpL~~a~p~~m~~s~v~~~Pv~vatvpS~~~~sl~nGplp~~~~s 163 (1118)
T KOG1029|consen 84 GIQLPPVLPPSLLKQPPRNAPSTWPGFGMGSLSYSQPLPPAAPRRMSSSPVVGPPVSVATVPSSRHNSLPNGPLPPTSNS 163 (1118)
T ss_pred CCcCCCCCChHHhccCCcCCCCCCCccCCCCcCcCCCCCcccccccCCCccCCCCcccccCCCCCCCCCCCCCCCCCCCC
Confidence 00 0
Q ss_pred ----------------------------CcHHHHHHHHHHhcCCCCCceeHHHHHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 027239 119 ----------------------------PIDDKIEFSFQLYDLKQQGFIERQEVKQMVVATLTESGMNLSDDVIESIIDK 170 (226)
Q Consensus 119 ----------------------------~~~~~~~~~F~~~D~d~~G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~ 170 (226)
..+-+++.+|...|+...|+++-..-+.+|.. -.++...+..++
T Consensus 164 pl~~~ss~se~~~~~~s~~q~~eWAVp~~~klKY~QlFNa~DktrsG~Lsg~qaR~aL~q------S~Lpq~~LA~IW-- 235 (1118)
T KOG1029|consen 164 PLPHDSSVSEGRPSIESVNQLEEWAVPQHNKLKYRQLFNALDKTRSGYLSGQQARSALGQ------SGLPQNQLAHIW-- 235 (1118)
T ss_pred CCCCCcchhhcCccchhhhhhhhccccchhhhHHHHHhhhcccccccccccHHHHHHHHh------cCCchhhHhhhe--
Confidence 02234788999999999999999999988633 356665555555
Q ss_pred HHHHhCCCCCCcccHHHHHHHHH
Q 027239 171 TFEEADTKHDGKIDKEEWRNLVL 193 (226)
Q Consensus 171 ~f~~~d~~~dG~Is~~eF~~~~~ 193 (226)
..-|.|+||+++-+||.-.|.
T Consensus 236 --~LsDvd~DGkL~~dEfilam~ 256 (1118)
T KOG1029|consen 236 --TLSDVDGDGKLSADEFILAMH 256 (1118)
T ss_pred --eeeccCCCCcccHHHHHHHHH
Confidence 789999999999999987765
No 94
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=96.96 E-value=0.00059 Score=48.42 Aligned_cols=62 Identities=24% Similarity=0.445 Sum_probs=41.6
Q ss_pred CcHHHHHHHHHHhcCCCCCceeHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHH
Q 027239 119 PIDDKIEFSFQLYDLKQQGFIERQEVKQMVVATLTESGMNLSDDVIESIIDKTFEEADTKHDGKIDKEEWRN 190 (226)
Q Consensus 119 ~~~~~~~~~F~~~D~d~~G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~dG~Is~~eF~~ 190 (226)
.....+...|..+|.++||.|+..|+..+... + ...+. -+..+|...|.|+||.||..||..
T Consensus 51 ~~~~~~~W~F~~LD~n~d~~L~~~El~~l~~~----l--~~~e~----C~~~F~~~CD~n~d~~Is~~EW~~ 112 (113)
T PF10591_consen 51 ECKRVVHWKFCQLDRNKDGVLDRSELKPLRRP----L--MPPEH----CARPFFRSCDVNKDGKISLDEWCN 112 (113)
T ss_dssp GGHHHHHHHHHHH--T-SSEE-TTTTGGGGST----T--STTGG----GHHHHHHHH-TT-SSSEEHHHHHH
T ss_pred hhhhhhhhhHhhhcCCCCCccCHHHHHHHHHH----H--hhhHH----HHHHHHHHcCCCCCCCCCHHHHcc
Confidence 45566888999999999999999999887321 1 12222 245566999999999999999975
No 95
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=96.89 E-value=0.0038 Score=53.57 Aligned_cols=102 Identities=18% Similarity=0.274 Sum_probs=68.4
Q ss_pred CCCHHHHHHHHHHHHhhcccCCCCCCccHH---HHHHHHhccCCcchHHHHHHHHHHcCCCCCCccHHHHHHHHHhhCCC
Q 027239 41 VFSVSEIEALYELFKKISSAVIDDGLINKE---EFQLALFKTNKKESLFADRVFDLFDTKHNGILDFEEFARALSIFHPN 117 (226)
Q Consensus 41 ~~s~~~i~~l~~~F~~~D~~~~~~G~i~~~---ef~~~l~~~~~~~~~~~~~lf~~~d~~~~g~i~~~eF~~~~~~~~~~ 117 (226)
+.|.+..-....-++.++.. .+..+ .+.+.|+.... -.+.+|+..|.|++|.|+.+||.+++..+..+
T Consensus 509 ~~s~d~~v~Y~~~~~~l~~e-----~~~~ea~~slvetLYr~ks----~LetiF~~iD~D~SG~isldEF~~a~~l~~sh 579 (631)
T KOG0377|consen 509 NGSDDGKVEYKSTLDNLDTE-----VILEEAGSSLVETLYRNKS----SLETIFNIIDADNSGEISLDEFRTAWKLLSSH 579 (631)
T ss_pred CCCcCcceehHhHHHHhhhh-----hHHHHHHhHHHHHHHhchh----hHHHHHHHhccCCCCceeHHHHHHHHHHHHhh
Confidence 34444444555666666532 23322 23334444322 24788999999999999999999887765432
Q ss_pred ---CCcHHHHHHHHHHhcCCCCCceeHHHHHHHHHHH
Q 027239 118 ---SPIDDKIEFSFQLYDLKQQGFIERQEVKQMVVAT 151 (226)
Q Consensus 118 ---~~~~~~~~~~F~~~D~d~~G~I~~~e~~~~l~~~ 151 (226)
.-....+..+-+.+|-++||.|+..||..++.-.
T Consensus 580 ~~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAFrlv 616 (631)
T KOG0377|consen 580 MNGAISDDEILELARSMDLNKDGKIDLNEFLEAFRLV 616 (631)
T ss_pred cCCCcCHHHHHHHHHhhccCCCCcccHHHHHHHHhhh
Confidence 2355668888889999999999999998876543
No 96
>PLN02952 phosphoinositide phospholipase C
Probab=96.88 E-value=0.016 Score=52.47 Aligned_cols=119 Identities=13% Similarity=0.273 Sum_probs=80.3
Q ss_pred CCCCccHHHHHHHHHhhCC-CCCcHHHHHHHHHHhcCCCCCceeHHHHHHHHHHHHhhcC-CCCCHHHHHHHHHHHHHHh
Q 027239 98 HNGILDFEEFARALSIFHP-NSPIDDKIEFSFQLYDLKQQGFIERQEVKQMVVATLTESG-MNLSDDVIESIIDKTFEEA 175 (226)
Q Consensus 98 ~~g~i~~~eF~~~~~~~~~-~~~~~~~~~~~F~~~D~d~~G~I~~~e~~~~l~~~~~~~~-~~~~~~~~~~~~~~~f~~~ 175 (226)
+.|.++|++|..+...+.. ......++..+|..|-.++ +.++.++|..+|... -+ ...+.+.+..++..++...
T Consensus 13 ~~g~l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~~~~-~~mt~~~l~~FL~~~---Q~e~~~~~~~~~~i~~~~~~~~ 88 (599)
T PLN02952 13 DSGSYNYKMFNLFNRKFKITEAEPPDDVKDVFCKFSVGG-GHMGADQLRRFLVLH---QDELDCTLAEAQRIVEEVINRR 88 (599)
T ss_pred cCCCcCHHHHHHHHHHhccccCCChHHHHHHHHHHhCCC-CccCHHHHHHHHHHh---CCCcCCCHHHHHHHHHHHHhhc
Confidence 4589999999988877653 2346778999999997544 689999999997554 22 2367777778876554433
Q ss_pred CC---CCCCcccHHHHHHHHHhChhhhhhhhccccccccccc-ccccccc
Q 027239 176 DT---KHDGKIDKEEWRNLVLRHPSLLKNMTLQYLKDITTTF-PSFVFHS 221 (226)
Q Consensus 176 d~---~~dG~Is~~eF~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~ 221 (226)
.. ...+.++++.|..++... ++.....-.-.++|++-. -+||.-+
T Consensus 89 ~~~~~~~~~~l~~~~F~~~l~s~-~~~~p~~~~v~qdm~~Pls~YfI~SS 137 (599)
T PLN02952 89 HHVTRYTRHGLNLDDFFHFLLYD-DLNGPITPQVHHDMTAPLSHYFIYTG 137 (599)
T ss_pred cccccccccCcCHHHHHHHHcCc-cccccccccccccCCCchhhheeecc
Confidence 21 123469999999999853 343333333456777766 5555543
No 97
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=96.77 E-value=0.01 Score=39.44 Aligned_cols=69 Identities=17% Similarity=0.421 Sum_probs=49.9
Q ss_pred HHHHHHHHhcCCCCCceeHHHHHHHHHHHHhhcCC-CCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhC
Q 027239 123 KIEFSFQLYDLKQQGFIERQEVKQMVVATLTESGM-NLSDDVIESIIDKTFEEADTKHDGKIDKEEWRNLVLRH 195 (226)
Q Consensus 123 ~~~~~F~~~D~d~~G~I~~~e~~~~l~~~~~~~~~-~~~~~~~~~~~~~~f~~~d~~~dG~Is~~eF~~~~~~~ 195 (226)
++..+|+.|.. +.+.|+.++|..+|..- -+. ..+.+.+.+++.+.-........+.+++++|..+|...
T Consensus 1 ei~~if~~ys~-~~~~mt~~~f~~FL~~e---Q~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~S~ 70 (83)
T PF09279_consen 1 EIEEIFRKYSS-DKEYMTAEEFRRFLREE---QGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLFSD 70 (83)
T ss_dssp HHHHHHHHHCT-TSSSEEHHHHHHHHHHT---SS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHHST
T ss_pred CHHHHHHHHhC-CCCcCCHHHHHHHHHHH---hccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHCCC
Confidence 36789999966 78999999999996432 233 46888888888542222222346899999999999863
No 98
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=96.68 E-value=0.014 Score=39.38 Aligned_cols=80 Identities=18% Similarity=0.343 Sum_probs=51.3
Q ss_pred HHHHHHHHHHhcCCCCCceeHHHHHHHHHHHHhh---cCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhChh
Q 027239 121 DDKIEFSFQLYDLKQQGFIERQEVKQMVVATLTE---SGMNLSDDVIESIIDKTFEEADTKHDGKIDKEEWRNLVLRHPS 197 (226)
Q Consensus 121 ~~~~~~~F~~~D~d~~G~I~~~e~~~~l~~~~~~---~~~~~~~~~~~~~~~~~f~~~d~~~dG~Is~~eF~~~~~~~~~ 197 (226)
.++++.+|+.+ .|++|.++...|..++..+++- .|+..+=--++..++..|+.. .....|+.++|+.|+...|.
T Consensus 2 ~dKyRylFsli-sd~~g~~~~~~l~~lL~d~lqip~~vgE~~aFg~~e~sv~sCF~~~--~~~~~I~~~~Fl~wl~~ePq 78 (90)
T PF09069_consen 2 EDKYRYLFSLI-SDSNGCMDQRKLGLLLHDVLQIPRAVGEGPAFGYIEPSVRSCFQQV--QLSPKITENQFLDWLMSEPQ 78 (90)
T ss_dssp HHHHHHHHHHH-S-TTS-B-HHHHHHHHHHHHHHHHHTT-GGGGT--HHHHHHHHHHT--TT-S-B-HHHHHHHHHT--T
T ss_pred hHHHHHHHHHH-cCCCCCCcHHHHHHHHHHHHHHHHHhCccccccCcHHHHHHHhccc--CCCCccCHHHHHHHHHhCCC
Confidence 46799999999 6778999999999988776552 332221112666677777776 34567999999999999998
Q ss_pred hhhhhh
Q 027239 198 LLKNMT 203 (226)
Q Consensus 198 l~~~~~ 203 (226)
.+-++.
T Consensus 79 ~lVWLP 84 (90)
T PF09069_consen 79 SLVWLP 84 (90)
T ss_dssp TTTHHH
T ss_pred eeeHHH
Confidence 776663
No 99
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=96.67 E-value=0.0068 Score=53.07 Aligned_cols=66 Identities=20% Similarity=0.337 Sum_probs=51.7
Q ss_pred HHHHHHHHhcCCCCCceeHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHh
Q 027239 123 KIEFSFQLYDLKQQGFIERQEVKQMVVATLTESGMNLSDDVIESIIDKTFEEADTKHDGKIDKEEWRNLVLR 194 (226)
Q Consensus 123 ~~~~~F~~~D~d~~G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~dG~Is~~eF~~~~~~ 194 (226)
.++..|...| +++|+|+..++..++.... ........+++++++ ...+.|.+|.|+|++|+..+..
T Consensus 20 ~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~-~~~g~~~~eei~~~l----~~~~~~~~g~v~fe~f~~~~~~ 85 (627)
T KOG0046|consen 20 ELKEKFNKLD-DQKGYVTVYELPDAFKKAK-LPLGYFVREEIKEIL----GEVGVDADGRVEFEEFVGIFLN 85 (627)
T ss_pred HHHHHHHhhc-CCCCeeehHHhHHHHHHhc-ccccchhHHHHHHHH----hccCCCcCCccCHHHHHHHHHh
Confidence 3677899999 9999999999999977651 122334456666666 8999999999999999996654
No 100
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=96.57 E-value=0.011 Score=55.18 Aligned_cols=107 Identities=14% Similarity=0.109 Sum_probs=85.8
Q ss_pred HhhcCCCHHHHHHHHHHHHhhcccCCCCCCccHHHHHHHHhccCCcchH------HHHHHHHHHcCCCCCCccHHHHHHH
Q 027239 37 ARETVFSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTNKKESL------FADRVFDLFDTKHNGILDFEEFARA 110 (226)
Q Consensus 37 ~~~~~~s~~~i~~l~~~F~~~D~~~~~~G~i~~~ef~~~l~~~~~~~~~------~~~~lf~~~d~~~~g~i~~~eF~~~ 110 (226)
......++..+.++++.|...++. ..|.++.++|..+|...+..... .+.++....|.+..|.+++.+|...
T Consensus 736 R~sk~~sQ~v~~ElrAle~~~~~~--d~~aa~~e~~~~~Lmslg~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~dd 813 (890)
T KOG0035|consen 736 RDSKGTSQYVLDELRALENEQDKI--DGGAASPEELLRCLMSLGYNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDD 813 (890)
T ss_pred hcccchhHHHHHHHHHHHhHHHHh--hcccCCHHHHHHHHHhcCcccchhHHHHHHHHHHHhccCcccccceeHHHHHhH
Confidence 345677888999999999999998 88999999999999887654322 2345556667777789999999999
Q ss_pred HHhhCCCCCcHHHHHHHHHHhcCCCCCceeHHHHHH
Q 027239 111 LSIFHPNSPIDDKIEFSFQLYDLKQQGFIERQEVKQ 146 (226)
Q Consensus 111 ~~~~~~~~~~~~~~~~~F~~~D~d~~G~I~~~e~~~ 146 (226)
+..-....+...++..+|+.+-++.. +|..+|+..
T Consensus 814 l~R~~e~l~~~~r~i~s~~d~~ktk~-~lL~eEL~~ 848 (890)
T KOG0035|consen 814 LEREYEDLDTELRAILAFEDWAKTKA-YLLLEELVR 848 (890)
T ss_pred hhhhhhhhcHHHHHHHHHHHHHcchh-HHHHHHHHh
Confidence 98766656778889999999877765 788888876
No 101
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=96.50 E-value=0.005 Score=31.04 Aligned_cols=26 Identities=27% Similarity=0.526 Sum_probs=18.4
Q ss_pred HHHHHHHhcCCCCCceeHHHHHHHHH
Q 027239 124 IEFSFQLYDLKQQGFIERQEVKQMVV 149 (226)
Q Consensus 124 ~~~~F~~~D~d~~G~I~~~e~~~~l~ 149 (226)
++.+|+.+|.+++|.|+..+|..++.
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~ 27 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLK 27 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHH
Confidence 45677777777777777777777653
No 102
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=96.32 E-value=0.013 Score=52.67 Aligned_cols=112 Identities=25% Similarity=0.441 Sum_probs=83.4
Q ss_pred CCHHHHHhhcCCCHHHHHHHHHHHHhhccc-CCCCC-----------CccHHHHHHHHhccC--CcchHHHHHHHHHHcC
Q 027239 31 EDPEALARETVFSVSEIEALYELFKKISSA-VIDDG-----------LINKEEFQLALFKTN--KKESLFADRVFDLFDT 96 (226)
Q Consensus 31 ~~~~~~~~~~~~s~~~i~~l~~~F~~~D~~-~~~~G-----------~i~~~ef~~~l~~~~--~~~~~~~~~lf~~~d~ 96 (226)
..++.+.....||.+++..++.+|...=.. +.+-| +|+...|..++..+. .....++.++|...|.
T Consensus 487 t~lrs~~~~~~lt~~dL~~lYd~f~~e~~~~~~~~~~~~p~~~~~eqyi~~~~f~~~f~~l~pw~~s~~~~~rlF~l~D~ 566 (671)
T KOG4347|consen 487 TILRSVVQTTSLTNTDLENLYDLFKEEHLTNSIGLGRSDPDFEAFEQYIDYAQFLEVFRELLPWAVSLIFLERLFRLLDD 566 (671)
T ss_pred HHHHhhcccCccCHHHHHHHHHHHHHHHhccCcccCCCCCCchHHHHHHHHhhHHHHhhccCchhHHHHHHHHHHHhccc
Confidence 446677778899999999999999874221 00111 133444444443322 1224467899999999
Q ss_pred CCCCCccHHHHHHHHHhhCCCCCcHHHHHHHHHHhcCCCCCceeHHHH
Q 027239 97 KHNGILDFEEFARALSIFHPNSPIDDKIEFSFQLYDLKQQGFIERQEV 144 (226)
Q Consensus 97 ~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~I~~~e~ 144 (226)
+.+|.++|.+++..+..++. +..-++++.+|+++|.+++ ....++.
T Consensus 567 s~~g~Ltf~~lv~gL~~l~~-~~~~ek~~l~y~lh~~p~~-~~d~e~~ 612 (671)
T KOG4347|consen 567 SMTGLLTFKDLVSGLSILKA-GDALEKLKLLYKLHDPPAD-ELDREEV 612 (671)
T ss_pred CCcceeEHHHHHHHHHHHHh-hhHHHHHHHHHhhccCCcc-ccccccc
Confidence 99999999999999999887 5788889999999999999 8888887
No 103
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=96.09 E-value=0.011 Score=29.65 Aligned_cols=26 Identities=38% Similarity=0.606 Sum_probs=22.4
Q ss_pred HHHHHHhCCCCCCcccHHHHHHHHHh
Q 027239 169 DKTFEEADTKHDGKIDKEEWRNLVLR 194 (226)
Q Consensus 169 ~~~f~~~d~~~dG~Is~~eF~~~~~~ 194 (226)
..+|..+|.+++|.|++.+|..++..
T Consensus 3 ~~~f~~~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 3 KEAFRLFDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred HHHHHHHCCCCCCcEeHHHHHHHHHh
Confidence 34668999999999999999998864
No 104
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=95.40 E-value=0.084 Score=34.95 Aligned_cols=61 Identities=15% Similarity=0.288 Sum_probs=40.4
Q ss_pred HHHHHHHHcCCCCCCccHHHHHHHHHhhCCC-CCcHHHHHHHHHHhcCC----CCCceeHHHHHHHH
Q 027239 87 ADRVFDLFDTKHNGILDFEEFARALSIFHPN-SPIDDKIEFSFQLYDLK----QQGFIERQEVKQMV 148 (226)
Q Consensus 87 ~~~lf~~~d~~~~g~i~~~eF~~~~~~~~~~-~~~~~~~~~~F~~~D~d----~~G~I~~~e~~~~l 148 (226)
+..+|..+.. +.+.++.++|..++....+. ....+.+..++..|..+ ..+.++.+.|...|
T Consensus 2 i~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL 67 (83)
T PF09279_consen 2 IEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFL 67 (83)
T ss_dssp HHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHH
T ss_pred HHHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHH
Confidence 4567777755 56677888877777665543 23466677777777543 35788888888876
No 105
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.14 E-value=0.1 Score=36.63 Aligned_cols=66 Identities=17% Similarity=0.299 Sum_probs=35.2
Q ss_pred cCCCHHHHHHHHHHHHhhcccCCCCCCccHHHHHHHHhc-----------cCCcchH----HHHHHHHHHcCCCCCCccH
Q 027239 40 TVFSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFK-----------TNKKESL----FADRVFDLFDTKHNGILDF 104 (226)
Q Consensus 40 ~~~s~~~i~~l~~~F~~~D~~~~~~G~i~~~ef~~~l~~-----------~~~~~~~----~~~~lf~~~d~~~~g~i~~ 104 (226)
..+|+++++- ..|...|-+ +||.++--|+..++.. .+...+. ++..+.+.-|.|++|.|+|
T Consensus 61 a~mtpeqlqf--HYF~MHDld--knn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDY 136 (144)
T KOG4065|consen 61 AKMTPEQLQF--HYFSMHDLD--KNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDY 136 (144)
T ss_pred hhCCHHHHhh--hhhhhhccC--cCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeH
Confidence 3556666543 345556666 7777777777666521 1111111 2333444456666666666
Q ss_pred HHHHH
Q 027239 105 EEFAR 109 (226)
Q Consensus 105 ~eF~~ 109 (226)
-||+.
T Consensus 137 gEflK 141 (144)
T KOG4065|consen 137 GEFLK 141 (144)
T ss_pred HHHHh
Confidence 66654
No 106
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=95.05 E-value=0.29 Score=43.96 Aligned_cols=154 Identities=17% Similarity=0.150 Sum_probs=95.7
Q ss_pred hcCCCHHHHHHHHHHHHhhcccCCCCCCccHHHHHHHHhc-cCCcch----HHHHHHHHHHcCCC--CCCccHHHHHHHH
Q 027239 39 ETVFSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFK-TNKKES----LFADRVFDLFDTKH--NGILDFEEFARAL 111 (226)
Q Consensus 39 ~~~~s~~~i~~l~~~F~~~D~~~~~~G~i~~~ef~~~l~~-~~~~~~----~~~~~lf~~~d~~~--~g~i~~~eF~~~~ 111 (226)
...+.+.-++.|.++|...|.| ++|.++-.|+...=.. .+.+.. ..++.+.+..-.++ ++.++..-|+...
T Consensus 186 ~qelkp~~v~al~RIFki~D~d--~D~~Lsd~Eln~fQ~~CF~~pl~p~~l~~vk~vv~e~~p~gv~~~~ltl~GFLfL~ 263 (625)
T KOG1707|consen 186 EQELKPRCVKALKRIFKISDSD--NDGALSDAELNDFQKKCFNTPLDPQELEDVKNVVQEICPDGVYERGLTLPGFLFLN 263 (625)
T ss_pred cccccHHHHHHHHHHHhhhccc--cccccchhhhhHHHHHhcCCCCCHHHHHHHHHHHHhhcCchhhhccccccchHHHH
Confidence 3456677899999999999999 9999999998754222 222221 12344444433332 4557777788776
Q ss_pred HhhCCCCCcHHHHHHHHHHhcCCCCCceeHHHHHHHHHHHHhhcC--CCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHH
Q 027239 112 SIFHPNSPIDDKIEFSFQLYDLKQQGFIERQEVKQMVVATLTESG--MNLSDDVIESIIDKTFEEADTKHDGKIDKEEWR 189 (226)
Q Consensus 112 ~~~~~~~~~~~~~~~~F~~~D~d~~G~I~~~e~~~~l~~~~~~~~--~~~~~~~~~~~~~~~f~~~d~~~dG~Is~~eF~ 189 (226)
..+... ...+....+.+.|..+.+-.++.+=+...+ ....+ ..+++ ..-..+..+|..+|.|+||.++-+|+.
T Consensus 264 ~lfier-gr~EttW~iLR~fgY~DsleL~~~~l~p~~---~~~p~~s~ELs~-~~~~Fl~~~f~~~D~d~Dg~L~p~El~ 338 (625)
T KOG1707|consen 264 TLFIER-GRHETTWTILRKFGYTDSLELTDEYLPPRL---KVPPDQSVELSP-KGYRFLVDVFEKFDRDNDGALSPEELK 338 (625)
T ss_pred HHHHHh-ccccchhhhhhhcCCcchhhhhhhhcCccc---cCCCCcceeccH-HHHHHHHHHHHhccCCCCCCcCHHHHH
Confidence 655442 344445667777755544333333222111 00111 23343 334567788999999999999999999
Q ss_pred HHHHhChhhh
Q 027239 190 NLVLRHPSLL 199 (226)
Q Consensus 190 ~~~~~~~~l~ 199 (226)
.....-|..-
T Consensus 339 ~LF~~~P~~p 348 (625)
T KOG1707|consen 339 DLFSTAPGSP 348 (625)
T ss_pred HHhhhCCCCC
Confidence 9998877544
No 107
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=94.76 E-value=0.13 Score=42.67 Aligned_cols=97 Identities=13% Similarity=0.107 Sum_probs=74.7
Q ss_pred HHHHHHHHhhcccCCCCCCccHHHHHHHHhcc-CC-cchHHHHHHHHHHcCCCCCCccHHHHHHHHHhhCCCCCcHHHHH
Q 027239 48 EALYELFKKISSAVIDDGLINKEEFQLALFKT-NK-KESLFADRVFDLFDTKHNGILDFEEFARALSIFHPNSPIDDKIE 125 (226)
Q Consensus 48 ~~l~~~F~~~D~~~~~~G~i~~~ef~~~l~~~-~~-~~~~~~~~lf~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~ 125 (226)
..+...|..+|.+ ++|.++..+-...+.-+ +. .....++-.|+.|+..-||.+.-.+|-.++..... -..-.+-
T Consensus 259 d~l~~~f~LFde~--~tg~~D~re~v~~lavlc~p~~t~~iiq~afk~f~v~eDg~~ge~~ls~ilq~~lg--v~~l~v~ 334 (412)
T KOG4666|consen 259 DKLAPTFMLFDEG--TTGNGDYRETVKTLAVLCGPPVTPVIIQYAFKRFSVAEDGISGEHILSLILQVVLG--VEVLRVP 334 (412)
T ss_pred hhhhhhhheecCC--CCCcccHHHHhhhheeeeCCCCcHHHHHHHHHhcccccccccchHHHHHHHHHhcC--cceeecc
Confidence 6788899999999 99999988876555332 22 22445678899999999999999888777765443 2233366
Q ss_pred HHHHHhcCCCCCceeHHHHHHHH
Q 027239 126 FSFQLYDLKQQGFIERQEVKQMV 148 (226)
Q Consensus 126 ~~F~~~D~d~~G~I~~~e~~~~l 148 (226)
-+|+.++...+|.|+..+|++++
T Consensus 335 ~lf~~i~q~d~~ki~~~~f~~fa 357 (412)
T KOG4666|consen 335 VLFPSIEQKDDPKIYASNFRKFA 357 (412)
T ss_pred ccchhhhcccCcceeHHHHHHHH
Confidence 78999999999999999999985
No 108
>KOG0039 consensus Ferric reductase, NADH/NADPH oxidase and related proteins [Inorganic ion transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=94.11 E-value=0.18 Score=46.61 Aligned_cols=95 Identities=27% Similarity=0.517 Sum_probs=76.6
Q ss_pred CCCccHHHHHHHHHhhCCCCCcHHHHHHHHHHhcCCCCCceeHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhCCC
Q 027239 99 NGILDFEEFARALSIFHPNSPIDDKIEFSFQLYDLKQQGFIERQEVKQMVVATLTESGMNLSDDVIESIIDKTFEEADTK 178 (226)
Q Consensus 99 ~g~i~~~eF~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~ 178 (226)
++ ++++||. ....+.+.+++..|.++|. ++|.++.+++..++..+..............++...+++..|.+
T Consensus 2 ~~-~~~~~~~------~~~~~~d~~l~~~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (646)
T KOG0039|consen 2 EG-ISFQELK------ITDCSYDDKLQTFFDMYDK-GDGKLTEEEVRELIMSSISANWLSLIKKQTEEYAALIMEELDPD 73 (646)
T ss_pred CC-cchhhhc------ccCCChhHHHHHHHHHHhh-hcCCccHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHhhhhcccc
Confidence 46 8999998 2235888999999999998 89999999999988877655444455566777788888999999
Q ss_pred CCCcccHHHHHHHHHhChhhhhh
Q 027239 179 HDGKIDKEEWRNLVLRHPSLLKN 201 (226)
Q Consensus 179 ~dG~Is~~eF~~~~~~~~~l~~~ 201 (226)
..|.+.++++...+...|.+...
T Consensus 74 ~~~y~~~~~~~~ll~~~~~~~~~ 96 (646)
T KOG0039|consen 74 HKGYITNEDLEILLLQIPTLLFA 96 (646)
T ss_pred ccceeeecchhHHHHhchHHHHH
Confidence 99999999999988877755543
No 109
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=93.96 E-value=2.5 Score=40.07 Aligned_cols=154 Identities=15% Similarity=0.261 Sum_probs=96.0
Q ss_pred HHHHHHhhcccCCCCCCccHHHHHHHHhccCCcchHHHHHHHHHH--cCCCCC-----CccHHHHHHHHHhhCCCCCcHH
Q 027239 50 LYELFKKISSAVIDDGLINKEEFQLALFKTNKKESLFADRVFDLF--DTKHNG-----ILDFEEFARALSIFHPNSPIDD 122 (226)
Q Consensus 50 l~~~F~~~D~~~~~~G~i~~~ef~~~l~~~~~~~~~~~~~lf~~~--d~~~~g-----~i~~~eF~~~~~~~~~~~~~~~ 122 (226)
+.+..-.+-...+..|+|....+...+-.... +..++.....+ -.+++. ..+++.|..++..++.+ .
T Consensus 148 l~K~~tklkmqvn~~grip~knI~k~F~~~k~--~KrVe~al~~~gLp~~k~dsI~~d~f~~e~f~~~l~klcpR----~ 221 (1189)
T KOG1265|consen 148 LFKAHTKLKMQVNFEGRIPVKNIIKTFSADKK--EKRVEKALEACGLPSGKNDSIEPDDFTLEKFYRLLNKLCPR----P 221 (1189)
T ss_pred HHHHHHhhhhcccccccccHHHHHHHhhcCCc--hhHHHHHHHhcCCCCCCcCccChhhccHHHHHHHHHhcCCc----h
Confidence 33444444333347888888888877633221 12222222222 122222 35677777777777763 3
Q ss_pred HHHHHHHHhcCCCCCceeHHHHHHHHHHHHhh------cCCCCCHHHHHHHHHHHHHHhCCCC----CCcccHHHHHHHH
Q 027239 123 KIEFSFQLYDLKQQGFIERQEVKQMVVATLTE------SGMNLSDDVIESIIDKTFEEADTKH----DGKIDKEEWRNLV 192 (226)
Q Consensus 123 ~~~~~F~~~D~d~~G~I~~~e~~~~l~~~~~~------~~~~~~~~~~~~~~~~~f~~~d~~~----dG~Is~~eF~~~~ 192 (226)
++..+|..+..++.-++|.++|..++..--+. +-+......+..++ +.+..|. .|+++-+-|++++
T Consensus 222 eie~iF~ki~~~~kpylT~~ql~dfln~~QrDpRLNeilfp~~~~~r~~~li----ekyEp~~~~a~~gqms~dgf~ryl 297 (1189)
T KOG1265|consen 222 EIEEIFRKISGKKKPYLTKEQLVDFLNKKQRDPRLNEILFPPADPRRIQSLI----EKYEPNSDNAEKGQMSTDGFVRYL 297 (1189)
T ss_pred hHHHHHHHhccCCCccccHHHHHHHHhhhccCcchhhhhcCCCCHHHHHHHH----HHcCCchhhhhccccchhhhHHHh
Confidence 58899999999988999999999997553221 22556777887777 7777664 7899999999999
Q ss_pred Hh--Chhhhhhhhccccccccccc
Q 027239 193 LR--HPSLLKNMTLQYLKDITTTF 214 (226)
Q Consensus 193 ~~--~~~l~~~~~~~~~~~~~~~~ 214 (226)
.. |+ +...=-+....+|.+--
T Consensus 298 ~gdEn~-i~a~~~l~l~~dM~qPl 320 (1189)
T KOG1265|consen 298 MGDENA-IVALDKLDLVTDMDQPL 320 (1189)
T ss_pred hCCccc-cccHHHHHhhhhhccch
Confidence 87 43 22222233444555543
No 110
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=93.61 E-value=0.16 Score=45.29 Aligned_cols=99 Identities=10% Similarity=0.096 Sum_probs=76.4
Q ss_pred cchhhhhHHHhhccccccccCCCCCCCHHHHHhhcCCCHHHHHHHHHHHHhhcccCCCCCCccHHHHHHHHhccCCc-ch
Q 027239 6 DGLKHFCVVVVNCCDADLYKQPRGLEDPEALARETVFSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTNKK-ES 84 (226)
Q Consensus 6 ~~~~~~~~~~mg~~~s~~~~~~~~~~~~~~~~~~~~~s~~~i~~l~~~F~~~D~~~~~~G~i~~~ef~~~l~~~~~~-~~ 84 (226)
+..+.|+...||...... ..-.....++++++...+..|..+|.+ +.|+++.++...+|+..... +.
T Consensus 561 ~~ar~fl~~~mg~~~~~~----------~~~~~~i~~~~~~~~~~~~rf~~lD~~--k~~~~~i~~v~~vlk~~~~~~d~ 628 (680)
T KOG0042|consen 561 EYARTFLNSEMGLSKEST----------SQMSIPIKLTPEDFLRRKTRFAFLDAD--KKAYQAIADVLKVLKSENVGWDE 628 (680)
T ss_pred HHHHHhhhhhhhhhhhhc----------cccccccccCHHHHHHHHHHHHhhcch--HHHHHHHHHHHHHHHHhcCCCCH
Confidence 455678888899332211 222244678999999999999999999 99999999999999776533 34
Q ss_pred HHHHHHHHHHcCCCCCCccHHHHHHHHHhhCC
Q 027239 85 LFADRVFDLFDTKHNGILDFEEFARALSIFHP 116 (226)
Q Consensus 85 ~~~~~lf~~~d~~~~g~i~~~eF~~~~~~~~~ 116 (226)
....++.+..|.+.+|.+...||...+.....
T Consensus 629 ~~~~~~l~ea~~~~~g~v~l~e~~q~~s~~~~ 660 (680)
T KOG0042|consen 629 DRLHEELQEADENLNGFVELREFLQLMSAIKN 660 (680)
T ss_pred HHHHHHHHHHHHhhcceeeHHHHHHHHHHHhc
Confidence 44677888888888999999999999887665
No 111
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.38 E-value=0.25 Score=43.39 Aligned_cols=77 Identities=17% Similarity=0.268 Sum_probs=62.7
Q ss_pred HHHhhcCCCHHHHHHHHHHHHhhcccCCCCCCccHHHHHHHHhccCCcchHHHHHHHHHHcCCCCCCccHHHHHHHHHhh
Q 027239 35 ALARETVFSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTNKKESLFADRVFDLFDTKHNGILDFEEFARALSIF 114 (226)
Q Consensus 35 ~~~~~~~~s~~~i~~l~~~F~~~D~~~~~~G~i~~~ef~~~l~~~~~~~~~~~~~lf~~~d~~~~g~i~~~eF~~~~~~~ 114 (226)
.+-.-..+++++.++....|...-+| -+|+|+-.--+.++........ .+..||+..|.+.||.++..||+.++...
T Consensus 218 ~~d~pw~IT~EQReYYvnQFrtvQpD--p~gfisGsaAknFFtKSklpi~-ELshIWeLsD~d~DGALtL~EFcAAfHLV 294 (737)
T KOG1955|consen 218 ELDTPWQITPEQREYYVNQFRTVQPD--PHGFISGSAAKNFFTKSKLPIE-ELSHIWELSDVDRDGALTLSEFCAAFHLV 294 (737)
T ss_pred ccCCccccCHHHHHHHHhhhhcccCC--cccccccHHHHhhhhhccCchH-HHHHHHhhcccCccccccHHHHHhhHhhe
Confidence 33445688999999999999999999 8999998887777755544433 35889999999999999999999998764
No 112
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=93.29 E-value=0.14 Score=42.88 Aligned_cols=62 Identities=21% Similarity=0.457 Sum_probs=47.2
Q ss_pred HHHHHHHHHHhcCCCCCceeHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHh
Q 027239 121 DDKIEFSFQLYDLKQQGFIERQEVKQMVVATLTESGMNLSDDVIESIIDKTFEEADTKHDGKIDKEEWRNLVLR 194 (226)
Q Consensus 121 ~~~~~~~F~~~D~d~~G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~dG~Is~~eF~~~~~~ 194 (226)
+..+-++|..+|.+.+|.++..|+..+. ..-.+.- ++-+|...|..+||.|+-.||.....+
T Consensus 249 Kds~gWMFnklD~N~Dl~Ld~sEl~~I~--------ldknE~C----ikpFfnsCD~~kDg~iS~~EWC~CF~k 310 (434)
T KOG3555|consen 249 KDSLGWMFNKLDTNYDLLLDQSELRAIE--------LDKNEAC----IKPFFNSCDTYKDGSISTNEWCYCFQK 310 (434)
T ss_pred hhhhhhhhhccccccccccCHHHhhhhh--------ccCchhH----HHHHHhhhcccccCccccchhhhhhcc
Confidence 4558888999999999999999998872 2233333 455558999999999999999877754
No 113
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=93.06 E-value=0.98 Score=41.77 Aligned_cols=97 Identities=14% Similarity=0.186 Sum_probs=70.0
Q ss_pred HHHHHHHHHHcCCCCCCccHHHHHHHHHhhCCCCCcHHHHHHHHHHhcCCCCCceeHHHHHHHHHHHHhhcCCCCCHHHH
Q 027239 85 LFADRVFDLFDTKHNGILDFEEFARALSIFHPNSPIDDKIEFSFQLYDLKQQGFIERQEVKQMVVATLTESGMNLSDDVI 164 (226)
Q Consensus 85 ~~~~~lf~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~I~~~e~~~~l~~~~~~~~~~~~~~~~ 164 (226)
..+..+|+..|.+++|.+++.+-..++..+.. .-....++..|+..+..+++.+..+++..+.... .... ++
T Consensus 136 ~wi~~~~~~ad~~~~~~~~~~~~~~~~~~~n~-~l~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~----~~rp---ev 207 (746)
T KOG0169|consen 136 HWIHSIFQEADKNKNGHMSFDEVLDLLKQLNV-QLSESKARRLFKESDNSQTGKLEEEEFVKFRKEL----TKRP---EV 207 (746)
T ss_pred HHHHHHHHHHccccccccchhhHHHHHHHHHH-hhhHHHHHHHHHHHHhhccceehHHHHHHHHHhh----ccCc---hH
Confidence 34678999999999999999999988877766 3566778999999999999999999999986544 2222 22
Q ss_pred HHHHHHHHHHhCCCCCCcccHHHHHHHHHh
Q 027239 165 ESIIDKTFEEADTKHDGKIDKEEWRNLVLR 194 (226)
Q Consensus 165 ~~~~~~~f~~~d~~~dG~Is~~eF~~~~~~ 194 (226)
..++ ..+- ++.+.++.+++++++..
T Consensus 208 ~~~f----~~~s-~~~~~ls~~~L~~Fl~~ 232 (746)
T KOG0169|consen 208 YFLF----VQYS-HGKEYLSTDDLLRFLEE 232 (746)
T ss_pred HHHH----HHHh-CCCCccCHHHHHHHHHH
Confidence 2222 3433 22566666666666643
No 114
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=92.78 E-value=0.39 Score=39.71 Aligned_cols=70 Identities=23% Similarity=0.316 Sum_probs=51.4
Q ss_pred HHHHHHhcCCCCCceeHHHHHHHHHHHHhhcCCCCC-HH-------HHHHHHHHHHHHhCCCCCCcccHHHHHHHHHh
Q 027239 125 EFSFQLYDLKQQGFIERQEVKQMVVATLTESGMNLS-DD-------VIESIIDKTFEEADTKHDGKIDKEEWRNLVLR 194 (226)
Q Consensus 125 ~~~F~~~D~d~~G~I~~~e~~~~l~~~~~~~~~~~~-~~-------~~~~~~~~~f~~~d~~~dG~Is~~eF~~~~~~ 194 (226)
+..|.+.|.+++|.++..|+..++..-+..+-.+-+ ++ +.-.+-..++..+|.|.|..||.+||+..-.+
T Consensus 247 KTFF~LHD~NsDGfldeqELEaLFtkELEKvYdpkNeeDDM~EmeEErlRMREHVMk~vDtNqDRlvtleEFL~~t~~ 324 (442)
T KOG3866|consen 247 KTFFALHDLNSDGFLDEQELEALFTKELEKVYDPKNEEDDMKEMEEERLRMREHVMKQVDTNQDRLVTLEEFLNDTDN 324 (442)
T ss_pred chheeeeccCCcccccHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHHHhhhhh
Confidence 456888999999999999999987665554332222 22 23334455778999999999999999987654
No 115
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=92.27 E-value=0.25 Score=41.40 Aligned_cols=103 Identities=17% Similarity=0.098 Sum_probs=71.9
Q ss_pred CCHHHH----HHHHHHHHhhcccCCCCCCccHHHHHHHHhccCC----cchHHHHHHHHHHcCCCCCCccHHHHHHHHHh
Q 027239 42 FSVSEI----EALYELFKKISSAVIDDGLINKEEFQLALFKTNK----KESLFADRVFDLFDTKHNGILDFEEFARALSI 113 (226)
Q Consensus 42 ~s~~~i----~~l~~~F~~~D~~~~~~G~i~~~ef~~~l~~~~~----~~~~~~~~lf~~~d~~~~g~i~~~eF~~~~~~ 113 (226)
-+.+++ .+|++.|..+=.+ +++......+...-.+... .-...+.=+|..+|.|.++.++..|...+-.
T Consensus 201 Ct~qeL~~lg~RL~dWF~~lhe~--s~~~~~~ss~~~~~~~~d~s~~p~CKds~gWMFnklD~N~Dl~Ld~sEl~~I~l- 277 (434)
T KOG3555|consen 201 CTDQELRRLGNRLRDWFKALHED--SSQNDKTSSLHSAASGFDTSILPICKDSLGWMFNKLDTNYDLLLDQSELRAIEL- 277 (434)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhh--hhccCcchhhcccccccccccCcchhhhhhhhhhccccccccccCHHHhhhhhc-
Confidence 455554 6888888887777 6776666666655322111 1122245578889999999999998766552
Q ss_pred hCCCCCcHHHHHHHHHHhcCCCCCceeHHHHHHHHHHH
Q 027239 114 FHPNSPIDDKIEFSFQLYDLKQQGFIERQEVKQMVVAT 151 (226)
Q Consensus 114 ~~~~~~~~~~~~~~F~~~D~d~~G~I~~~e~~~~l~~~ 151 (226)
...+.-++..|...|...+|.|+-.|....+...
T Consensus 278 ----dknE~CikpFfnsCD~~kDg~iS~~EWC~CF~k~ 311 (434)
T KOG3555|consen 278 ----DKNEACIKPFFNSCDTYKDGSISTNEWCYCFQKS 311 (434)
T ss_pred ----cCchhHHHHHHhhhcccccCccccchhhhhhccC
Confidence 3556668888899998889999999988877653
No 116
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=91.88 E-value=3.3 Score=29.90 Aligned_cols=93 Identities=11% Similarity=0.258 Sum_probs=50.9
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHhhcccCCCCCCccHHHHHHHHhccCCcchHHHHHHHHHHcCCCCCCccHH-----HH
Q 027239 33 PEALARETVFSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTNKKESLFADRVFDLFDTKHNGILDFE-----EF 107 (226)
Q Consensus 33 ~~~~~~~~~~s~~~i~~l~~~F~~~D~~~~~~G~i~~~ef~~~l~~~~~~~~~~~~~lf~~~d~~~~g~i~~~-----eF 107 (226)
++.+++...+..=++..+.+.|....-+...+..|+..++..+| ..+|........+..+.. .-
T Consensus 26 LR~lQk~~~l~lv~l~~v~~~f~~~~l~~~~d~~l~v~~l~~~L-----------~~iy~~l~~~~p~~~~i~~~~v~~a 94 (127)
T PF09068_consen 26 LRFLQKRLCLDLVDLSNVIEAFREHGLNQSNDSSLSVSQLETLL-----------SSIYEFLNKRLPTLHQIPSRPVDLA 94 (127)
T ss_dssp HHHHHHHTTGGG--HHHHHHHHHHTT---T-TSEEEHHHHHHHH-----------HHHHHHHHHHSTTS--HH-----HH
T ss_pred HHHHHHHHhheeeeHHHHHHHHHHcCCCcccCCCCCHHHHHHHH-----------HHHHHHHHHHCCCCCCCCchhHHHH
Confidence 55666666666667777888888877653234567777777655 334433322222222221 21
Q ss_pred HHHHHhhCCCCCcHHHHHHHHHHhcCCCCCceeHHHHHHHH
Q 027239 108 ARALSIFHPNSPIDDKIEFSFQLYDLKQQGFIERQEVKQMV 148 (226)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~I~~~e~~~~l 148 (226)
... -+.+++..||.+++|.|+.-.++-++
T Consensus 95 ~~L------------~ln~Ll~vyD~~rtG~I~vls~KvaL 123 (127)
T PF09068_consen 95 VDL------------LLNWLLNVYDSQRTGKIRVLSFKVAL 123 (127)
T ss_dssp HHH------------HHHHHHHHH-TT--SEEEHHHHHHHH
T ss_pred HHH------------HHHHHHHHhCCCCCCeeehhHHHHHH
Confidence 221 26788888999999999988887765
No 117
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=91.79 E-value=0.36 Score=33.03 Aligned_cols=66 Identities=17% Similarity=0.319 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHhhcccCCCCCCccHHHHHHHHhccCCcchHHHHHHHHHHcCCC---CCCccHHHHHHHHHhhC
Q 027239 44 VSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTNKKESLFADRVFDLFDTKH---NGILDFEEFARALSIFH 115 (226)
Q Consensus 44 ~~~i~~l~~~F~~~D~~~~~~G~i~~~ef~~~l~~~~~~~~~~~~~lf~~~d~~~---~g~i~~~eF~~~~~~~~ 115 (226)
.+....+...|+.+. .+|++++..|..++... ...+++.++|+.+.... .+.|+.+|+..++..+.
T Consensus 26 ~~~W~~VE~RFd~La----~dG~L~rs~Fg~CIGM~--dSkeFA~eLFdALaRrr~i~~~~I~k~eL~efW~qis 94 (100)
T PF08414_consen 26 ADGWKEVEKRFDKLA----KDGLLPRSDFGECIGMK--DSKEFAGELFDALARRRGIKGDSITKDELKEFWEQIS 94 (100)
T ss_dssp ---HHHHHHHHHHH-----BTTBEEGGGHHHHHT----S-HHHHHHHHHHHHHHTT--SSEE-HHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHhC----cCCcccHHHHHHhcCCc--ccHHHHHHHHHHHHHhcCCccCCcCHHHHHHHHHHhh
Confidence 345888999999998 57999999999998433 35677888888875322 35688888887776554
No 118
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=91.57 E-value=0.82 Score=34.25 Aligned_cols=65 Identities=20% Similarity=0.288 Sum_probs=44.3
Q ss_pred HHHHHHHHhhcccCCCCCCccHHHHHHHHhccCCc----chHHHHHHHHHHcCCCCCCccHHHHHHHHHhh
Q 027239 48 EALYELFKKISSAVIDDGLINKEEFQLALFKTNKK----ESLFADRVFDLFDTKHNGILDFEEFARALSIF 114 (226)
Q Consensus 48 ~~l~~~F~~~D~~~~~~G~i~~~ef~~~l~~~~~~----~~~~~~~lf~~~d~~~~g~i~~~eF~~~~~~~ 114 (226)
+.++..|..+... +...|+...|..++...+.. ....+..+|..+-..+...|+|++|+.++..+
T Consensus 2 ~~~F~~f~~fG~~--~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~~l 70 (154)
T PF05517_consen 2 EAVFKAFASFGKK--NGTEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAKGARKITFEQFLEALAEL 70 (154)
T ss_dssp HHHHHHHHCSSTS--TSSEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCC--ccccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcCCCcccCHHHHHHHHHHH
Confidence 3455555555544 67789999999998764432 23457888999876666779999999988643
No 119
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=91.26 E-value=0.16 Score=42.22 Aligned_cols=61 Identities=16% Similarity=0.163 Sum_probs=48.7
Q ss_pred HHHHHcCCCCCCccHHHHHHHHHhhCCCCCcHHHHHHHHHHhcCCCCCceeHHHHHHHHHH
Q 027239 90 VFDLFDTKHNGILDFEEFARALSIFHPNSPIDDKIEFSFQLYDLKQQGFIERQEVKQMVVA 150 (226)
Q Consensus 90 lf~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~I~~~e~~~~l~~ 150 (226)
.|..+|.|.++.|+-.|+..+-..+......+.-.+..|+..|.++|-.|+++|+...+..
T Consensus 338 ~F~qLdkN~nn~i~rrEwKpFK~~l~k~s~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~~ 398 (421)
T KOG4578|consen 338 YFNQLDKNSNNDIERREWKPFKRVLLKKSKPRKCSRKFFKYCDLNKDKKISLDEWRGCLGV 398 (421)
T ss_pred eeeeecccccCccchhhcchHHHHHHhhccHHHHhhhcchhcccCCCceecHHHHhhhhcc
Confidence 5888999999999988877766555554455666788999999999999999999987643
No 120
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.98 E-value=0.32 Score=46.33 Aligned_cols=142 Identities=21% Similarity=0.361 Sum_probs=107.1
Q ss_pred hcCCCHHHHHHHHHHHHhhcccCCCCCCccHHHHHHHHhccCCcchHHHHHHHHHHcCCCCCCccHHHHHHHHHhhC---
Q 027239 39 ETVFSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTNKKESLFADRVFDLFDTKHNGILDFEEFARALSIFH--- 115 (226)
Q Consensus 39 ~~~~s~~~i~~l~~~F~~~D~~~~~~G~i~~~ef~~~l~~~~~~~~~~~~~lf~~~d~~~~g~i~~~eF~~~~~~~~--- 115 (226)
...++.++......+|..+.+ ++|.++-...+-+|......... ..+++...|.+.+|.+++.||...+....
T Consensus 120 ~p~~~~qe~aky~q~f~s~~p---~~g~~sg~~~~pil~~s~Lp~~~-l~~iw~l~d~d~~g~Ld~~ef~~am~l~~~~l 195 (847)
T KOG0998|consen 120 VPAITPQEQAKYDQIFRSLSP---SNGLLSGDKAKPILLNSKLPSDV-LGRIWELSDIDKDGNLDRDEFAVAMHLINDLL 195 (847)
T ss_pred CCCCCHHHHHHHHHHHhccCC---CCCccccchhhhhhhcCCCChhh-hccccccccccccCCCChhhhhhhhhHHHHHh
Confidence 446789999999999999998 49999999988877666555443 46889999999999999999998765310
Q ss_pred C-------------------------------------------------------------------------------
Q 027239 116 P------------------------------------------------------------------------------- 116 (226)
Q Consensus 116 ~------------------------------------------------------------------------------- 116 (226)
.
T Consensus 196 ~~~~~p~P~~~p~~lIpps~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~~~~~~s~~~~~~~~~~q~~~s~~~ 275 (847)
T KOG0998|consen 196 NGNSEPVPSRLPPSLIPPSKSELSANSSSKAIPFSQPFLASMASPTTLSSLVDLSALNSNPSLSSLSLASSMQLIVSWSP 275 (847)
T ss_pred hcccCCCCccCCcccCCcchhcccccCcccccccccccccccccccccccccchhcccCCccccccccccccccccccCc
Confidence 0
Q ss_pred CC--CcHHHHHHHHHHhcCCCCCceeHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHh
Q 027239 117 NS--PIDDKIEFSFQLYDLKQQGFIERQEVKQMVVATLTESGMNLSDDVIESIIDKTFEEADTKHDGKIDKEEWRNLVLR 194 (226)
Q Consensus 117 ~~--~~~~~~~~~F~~~D~d~~G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~dG~Is~~eF~~~~~~ 194 (226)
.. .....+..+|...|.+.+|.|+-.+...++.. ..++...+...+ ...|....|.|++++|.-.+..
T Consensus 276 ~vsp~d~~~~~~if~q~d~~~dG~I~s~~~~~~f~~------~gl~~~~l~~~w----~l~d~~n~~~ls~~ef~~~~~~ 345 (847)
T KOG0998|consen 276 KVSPSDKQKYSKIFSQVDKDNDGSISSNEARNIFLP------FGLSKPRLAHVW----LLADTQNTGTLSKDEFALAMHL 345 (847)
T ss_pred ccChHHHHHHHHHHHhccccCCCccccccccccccc------CCCChhhhhhhh----hhcchhccCcccccccchhhhh
Confidence 00 01234566789999999999999999887522 445555555555 7889999999999988766653
No 121
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.83 E-value=0.37 Score=44.55 Aligned_cols=64 Identities=19% Similarity=0.317 Sum_probs=53.5
Q ss_pred HHHHHHHHHhhcccCCCCCCccHHHHHHHHhccCCcchHHHHHHHHHHcCCCCCCccHHHHHHHHHh
Q 027239 47 IEALYELFKKISSAVIDDGLINKEEFQLALFKTNKKESLFADRVFDLFDTKHNGILDFEEFARALSI 113 (226)
Q Consensus 47 i~~l~~~F~~~D~~~~~~G~i~~~ef~~~l~~~~~~~~~~~~~lf~~~d~~~~g~i~~~eF~~~~~~ 113 (226)
-...+.+|+.+|+. .+|+++-.+-+.+|...+..... +..|+..-|.|+||.++-+||+.++..
T Consensus 194 klKY~QlFNa~Dkt--rsG~Lsg~qaR~aL~qS~Lpq~~-LA~IW~LsDvd~DGkL~~dEfilam~l 257 (1118)
T KOG1029|consen 194 KLKYRQLFNALDKT--RSGYLSGQQARSALGQSGLPQNQ-LAHIWTLSDVDGDGKLSADEFILAMHL 257 (1118)
T ss_pred hhHHHHHhhhcccc--cccccccHHHHHHHHhcCCchhh-HhhheeeeccCCCCcccHHHHHHHHHH
Confidence 34567899999999 99999999999888776655444 467889999999999999999988764
No 122
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=90.61 E-value=0.19 Score=41.84 Aligned_cols=68 Identities=25% Similarity=0.310 Sum_probs=52.2
Q ss_pred HHHHHHHHhcCCCCCceeHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhChh
Q 027239 123 KIEFSFQLYDLKQQGFIERQEVKQMVVATLTESGMNLSDDVIESIIDKTFEEADTKHDGKIDKEEWRNLVLRHPS 197 (226)
Q Consensus 123 ~~~~~F~~~D~d~~G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~dG~Is~~eF~~~~~~~~~ 197 (226)
.+.+-|..+|++.++.|...|++.+=.-+++ ......-.+.+|+-.|.|+|-+||++||+..+...++
T Consensus 334 vv~w~F~qLdkN~nn~i~rrEwKpFK~~l~k-------~s~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~~~~~ 401 (421)
T KOG4578|consen 334 VVHWYFNQLDKNSNNDIERREWKPFKRVLLK-------KSKPRKCSRKFFKYCDLNKDKKISLDEWRGCLGVEKE 401 (421)
T ss_pred eeeeeeeeecccccCccchhhcchHHHHHHh-------hccHHHHhhhcchhcccCCCceecHHHHhhhhccccc
Confidence 4677899999999999999998775322211 1234455677789999999999999999999876543
No 123
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=90.27 E-value=0.22 Score=31.88 Aligned_cols=29 Identities=7% Similarity=0.329 Sum_probs=24.6
Q ss_pred CcHHHHHHHHHHhcCCCCCceeHHHHHHHH
Q 027239 119 PIDDKIEFSFQLYDLKQQGFIERQEVKQMV 148 (226)
Q Consensus 119 ~~~~~~~~~F~~~D~d~~G~I~~~e~~~~l 148 (226)
...+.+..+|+.+ .++.++||.++|++.+
T Consensus 3 ~s~eqv~~aFr~l-A~~KpyVT~~dLr~~l 31 (69)
T PF08726_consen 3 DSAEQVEEAFRAL-AGGKPYVTEEDLRRSL 31 (69)
T ss_dssp STCHHHHHHHHHH-CTSSSCEEHHHHHHHS
T ss_pred CCHHHHHHHHHHH-HcCCCcccHHHHHHHc
Confidence 3456799999999 7788999999999973
No 124
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=89.92 E-value=0.57 Score=46.20 Aligned_cols=58 Identities=16% Similarity=0.358 Sum_probs=47.5
Q ss_pred HHHHhcCCCCCceeHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHH
Q 027239 127 SFQLYDLKQQGFIERQEVKQMVVATLTESGMNLSDDVIESIIDKTFEEADTKHDGKIDKEEWRNLVL 193 (226)
Q Consensus 127 ~F~~~D~d~~G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~dG~Is~~eF~~~~~ 193 (226)
-|+.||.||.|.|+..+|.++|.. ..+.+..+++-++ .-...|.+..++|++|+.-..
T Consensus 4062 tfkeydpdgkgiiskkdf~kame~-----~k~ytqse~dfll----scae~dend~~~y~dfv~rfh 4119 (5019)
T KOG2243|consen 4062 TFKEYDPDGKGIISKKDFHKAMEG-----HKHYTQSEIDFLL----SCAEADENDMFDYEDFVDRFH 4119 (5019)
T ss_pred cchhcCCCCCccccHHHHHHHHhc-----cccchhHHHHHHH----HhhccCccccccHHHHHHHhc
Confidence 488899999999999999998643 3567777776666 677888899999999987654
No 125
>PLN02230 phosphoinositide phospholipase C 4
Probab=88.42 E-value=3 Score=38.13 Aligned_cols=99 Identities=10% Similarity=0.195 Sum_probs=62.4
Q ss_pred cHHHHHHHHHHhcCCCCCceeHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhC---CCCCCcccHHHHHHHHHhCh
Q 027239 120 IDDKIEFSFQLYDLKQQGFIERQEVKQMVVATLTESGMNLSDDVIESIIDKTFEEAD---TKHDGKIDKEEWRNLVLRHP 196 (226)
Q Consensus 120 ~~~~~~~~F~~~D~d~~G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d---~~~dG~Is~~eF~~~~~~~~ 196 (226)
...++..+|..|..++ +.++.++|..+|... +......+.+.+..++..+..... .-+.+.++.+.|..++...
T Consensus 27 p~~ei~~lf~~~s~~~-~~mt~~~l~~FL~~~-Q~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~~yL~s~- 103 (598)
T PLN02230 27 PVADVRDLFEKYADGD-AHMSPEQLQKLMAEE-GGGEGETSLEEAERIVDEVLRRKHHIAKFTRRNLTLDDFNYYLFST- 103 (598)
T ss_pred CcHHHHHHHHHHhCCC-CccCHHHHHHHHHHh-CCCcccCCHHHHHHHHHHHHhhccccccccccccCHHHHHHHHcCc-
Confidence 4567999999996554 799999999997543 100113466777777765443332 1234569999999999773
Q ss_pred hhhhhhhccccccccccc-ccccccc
Q 027239 197 SLLKNMTLQYLKDITTTF-PSFVFHS 221 (226)
Q Consensus 197 ~l~~~~~~~~~~~~~~~~-~~~~~~~ 221 (226)
++.....-.-.++|++-. -+||.-+
T Consensus 104 ~~~~~~~~~v~qDM~~PLshYfI~sS 129 (598)
T PLN02230 104 DLNPPIADQVHQNMDAPLSHYFIFTG 129 (598)
T ss_pred ccCCcccccccccCCCchhhheeecc
Confidence 333222223457777765 4555543
No 126
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=88.40 E-value=2.4 Score=32.20 Aligned_cols=41 Identities=7% Similarity=0.073 Sum_probs=31.1
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhChhhhhhh
Q 027239 158 NLSDDVIESIIDKTFEEADTKHDGKIDKEEWRNLVLRHPSLLKNM 202 (226)
Q Consensus 158 ~~~~~~~~~~~~~~f~~~d~~~dG~Is~~eF~~~~~~~~~l~~~~ 202 (226)
.+.++.+++++ ..++..+.+.+|+.|..+++..|......+
T Consensus 92 rFvp~kFe~iF----~kya~~~~d~LT~~E~~~m~~~nr~~~D~~ 132 (174)
T PF05042_consen 92 RFVPQKFEEIF----SKYAKTGPDALTLRELWRMLKGNRNANDPF 132 (174)
T ss_pred cCCHHHHHHHH----HHhCCCCCCCcCHHHHHHHHHhccccCCcc
Confidence 34555555544 899888888999999999999987766543
No 127
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=88.25 E-value=6.1 Score=30.08 Aligned_cols=61 Identities=13% Similarity=0.205 Sum_probs=32.8
Q ss_pred HHHHHHHHcCCCCCCccHHHHHHHHHhhCCCCCc------HHHHHHHHHHhcCCCCCceeHHHHHHHH
Q 027239 87 ADRVFDLFDTKHNGILDFEEFARALSIFHPNSPI------DDKIEFSFQLYDLKQQGFIERQEVKQMV 148 (226)
Q Consensus 87 ~~~lf~~~d~~~~g~i~~~eF~~~~~~~~~~~~~------~~~~~~~F~~~D~d~~G~I~~~e~~~~l 148 (226)
.+++|..++..+.+.+|+.|....+...+...+. .-++..+|.+. .+.+|.+..++++.++
T Consensus 98 Fe~iF~kya~~~~d~LT~~E~~~m~~~nr~~~D~~GW~a~~~EW~~~y~L~-~d~dG~l~Ke~iR~vY 164 (174)
T PF05042_consen 98 FEEIFSKYAKTGPDALTLRELWRMLKGNRNANDPFGWFAAFFEWGALYILA-KDKDGFLSKEDIRGVY 164 (174)
T ss_pred HHHHHHHhCCCCCCCcCHHHHHHHHHhccccCCcchhhhhhhHHHHHHHHH-cCcCCcEeHHHHhhhc
Confidence 4666666666655667777766666553332221 11233334432 4446677777666653
No 128
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=86.59 E-value=2 Score=39.16 Aligned_cols=78 Identities=17% Similarity=0.208 Sum_probs=53.0
Q ss_pred ccHHHHHHHHHhhCCCCCcHHHHHHHHHHhcCCCCCceeHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhCCCCCC
Q 027239 102 LDFEEFARALSIFHPNSPIDDKIEFSFQLYDLKQQGFIERQEVKQMVVATLTESGMNLSDDVIESIIDKTFEEADTKHDG 181 (226)
Q Consensus 102 i~~~eF~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~dG 181 (226)
|+|..|...+....+-.....-+.++|+.+|.+++|.|+..++...+..+.. .++.+-++-+|+.+|.+++
T Consensus 535 i~~~~f~~~f~~l~pw~~s~~~~~rlF~l~D~s~~g~Ltf~~lv~gL~~l~~--------~~~~ek~~l~y~lh~~p~~- 605 (671)
T KOG4347|consen 535 IDYAQFLEVFRELLPWAVSLIFLERLFRLLDDSMTGLLTFKDLVSGLSILKA--------GDALEKLKLLYKLHDPPAD- 605 (671)
T ss_pred HHHhhHHHHhhccCchhHHHHHHHHHHHhcccCCcceeEHHHHHHHHHHHHh--------hhHHHHHHHHHhhccCCcc-
Confidence 4455555555544433333445788999999999999999999998766522 1233445677889998887
Q ss_pred cccHHHH
Q 027239 182 KIDKEEW 188 (226)
Q Consensus 182 ~Is~~eF 188 (226)
..+.++-
T Consensus 606 ~~d~e~~ 612 (671)
T KOG4347|consen 606 ELDREEV 612 (671)
T ss_pred ccccccc
Confidence 7666655
No 129
>PLN02223 phosphoinositide phospholipase C
Probab=86.53 E-value=4.5 Score=36.47 Aligned_cols=101 Identities=12% Similarity=0.003 Sum_probs=66.5
Q ss_pred CcHHHHHHHHHHhcCCCCCceeHHHHHHHHHHHHhhcC-CCCCHHHHHHHHHHHHHHhCC----CCCCcccHHHHHHHHH
Q 027239 119 PIDDKIEFSFQLYDLKQQGFIERQEVKQMVVATLTESG-MNLSDDVIESIIDKTFEEADT----KHDGKIDKEEWRNLVL 193 (226)
Q Consensus 119 ~~~~~~~~~F~~~D~d~~G~I~~~e~~~~l~~~~~~~~-~~~~~~~~~~~~~~~f~~~d~----~~dG~Is~~eF~~~~~ 193 (226)
...+.++.+|..|. ++.|.++.+.+..++.-+...-| ...+.++++.+++.++..... .+.+.++.+.|.+++.
T Consensus 13 ~~p~~v~~~f~~~~-~~~~~m~~~~l~~fl~~l~~~q~e~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~l~~~~f~~~L~ 91 (537)
T PLN02223 13 NQPDLILNFFGNEF-HGYDDDMPELLPRFIELLDTEKDEDGAGLNAAEKIAAELKRRKCDILAFRNLRCLELDHLNEFLF 91 (537)
T ss_pred CCcHHHHHHHHHhh-cCCCCCCHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcccchhhhhccccCHHHHHHHhc
Confidence 34567999999995 66789999999998744333333 457778888999877755421 2235699999999997
Q ss_pred hChhhhhhhhccc-cccccccc-ccccccc
Q 027239 194 RHPSLLKNMTLQY-LKDITTTF-PSFVFHS 221 (226)
Q Consensus 194 ~~~~l~~~~~~~~-~~~~~~~~-~~~~~~~ 221 (226)
.. ++........ ..+|++-. -+||+-+
T Consensus 92 s~-~~n~~~~~~v~~~DM~~PLshYfI~SS 120 (537)
T PLN02223 92 ST-ELNPPIGDQVRHHDMHAPLSHYFIHTS 120 (537)
T ss_pred Cc-ccCCccccccCcccCCCchhhheeecc
Confidence 62 2222222122 56788776 5566543
No 130
>KOG4286 consensus Dystrophin-like protein [Cell motility; Signal transduction mechanisms; Cytoskeleton]
Probab=86.47 E-value=8.4 Score=35.98 Aligned_cols=159 Identities=9% Similarity=0.177 Sum_probs=96.5
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHhhcccCCCCCCccHHHHHHHHhc--------cC--Ccc----hHHHHHHHHHHcCCCC
Q 027239 34 EALARETVFSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFK--------TN--KKE----SLFADRVFDLFDTKHN 99 (226)
Q Consensus 34 ~~~~~~~~~s~~~i~~l~~~F~~~D~~~~~~G~i~~~ef~~~l~~--------~~--~~~----~~~~~~lf~~~d~~~~ 99 (226)
.++++.-.+..=.+.-+.++|++++-.. +.-.+...+...+|.. .+ ... +.-+.=++..||...+
T Consensus 406 r~LQK~l~ldlv~ltl~l~if~~h~l~~-~~e~m~~~~~i~~L~~~y~~l~e~~g~~v~v~l~vD~~lN~llNvyD~~R~ 484 (966)
T KOG4286|consen 406 RRLQKALCLDLLSLSLALDALDQHNLKQ-NDQPMDILQIINCLTTIYDRLEQEHGNLVNVPLCVDMCLNWLLNVYDTGRT 484 (966)
T ss_pred HHHHHHHHhccccHHHHHHHHHHhcccc-cCcCCCHHHHHHHHHHHHHHHHHHcccccccchHHHHHHHHHHHhcccCCC
Confidence 3333433444444555667788777541 2234555554444411 11 111 2223557899999999
Q ss_pred CCccHHHHHHHHHhhCCCCCcHHHHHHHHHHhcCCCCCceeHHHHHHHHHHH---Hhh------cC-CCCCHHHHHHHHH
Q 027239 100 GILDFEEFARALSIFHPNSPIDDKIEFSFQLYDLKQQGFIERQEVKQMVVAT---LTE------SG-MNLSDDVIESIID 169 (226)
Q Consensus 100 g~i~~~eF~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~I~~~e~~~~l~~~---~~~------~~-~~~~~~~~~~~~~ 169 (226)
|.|..-+|...+..+++ ...+++++.+|+....++...+ ...|..++-.+ ... .| .++. --++
T Consensus 485 g~irvls~ki~~i~lck-~~leek~~ylF~~vA~~~sq~~-q~~l~lLL~dliqipr~lGE~aAfGgsNve-----psvr 557 (966)
T KOG4286|consen 485 GRIRVLSFKIGIISLCK-AHLEDKYRYLFKQVASSTSQCD-QRRLGLLLHDLIQIPRQLGEVAAFGGSNIE-----PSVR 557 (966)
T ss_pred cceEEeeehhhHHHHhc-chhHHHHHHHHHHHcCchhhHH-HHHHHHHHHHHHHHHHHHhHHHhhcCCCCC-----hHHH
Confidence 99999999999998888 5788999999999987766543 43343332221 111 12 2222 2244
Q ss_pred HHHHHhCCCCCCcccHHHHHHHHHhChhhhhhh
Q 027239 170 KTFEEADTKHDGKIDKEEWRNLVLRHPSLLKNM 202 (226)
Q Consensus 170 ~~f~~~d~~~dG~Is~~eF~~~~~~~~~l~~~~ 202 (226)
..|+. .++-..|++..|..|+...|...-++
T Consensus 558 sCF~~--v~~~pei~~~~f~dw~~~epqsmVwL 588 (966)
T KOG4286|consen 558 SCFQF--VNNKPEIEAALFLDWMRLEPQSMVWL 588 (966)
T ss_pred HHHHh--cCCCCcchHHHHHHHhccCcchhhHH
Confidence 55563 34556799999999999888666553
No 131
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.13 E-value=2.4 Score=37.45 Aligned_cols=63 Identities=19% Similarity=0.283 Sum_probs=49.3
Q ss_pred HHHHHHHHHHhcCCCCCceeHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHH
Q 027239 121 DDKIEFSFQLYDLKQQGFIERQEVKQMVVATLTESGMNLSDDVIESIIDKTFEEADTKHDGKIDKEEWRNLVL 193 (226)
Q Consensus 121 ~~~~~~~F~~~D~d~~G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~dG~Is~~eF~~~~~ 193 (226)
++-+..-|+-.-.|-+|.|+-.--++++.+. .+.-+++..++ +..|.++||.+++.||..++.
T Consensus 230 ReYYvnQFrtvQpDp~gfisGsaAknFFtKS------klpi~ELshIW----eLsD~d~DGALtL~EFcAAfH 292 (737)
T KOG1955|consen 230 REYYVNQFRTVQPDPHGFISGSAAKNFFTKS------KLPIEELSHIW----ELSDVDRDGALTLSEFCAAFH 292 (737)
T ss_pred HHHHHhhhhcccCCcccccccHHHHhhhhhc------cCchHHHHHHH----hhcccCccccccHHHHHhhHh
Confidence 3446667888888999999998888875443 45556665556 899999999999999998885
No 132
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=84.97 E-value=2 Score=38.73 Aligned_cols=63 Identities=16% Similarity=0.329 Sum_probs=53.4
Q ss_pred HHHHHHHhcCCCCCceeHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHh
Q 027239 124 IEFSFQLYDLKQQGFIERQEVKQMVVATLTESGMNLSDDVIESIIDKTFEEADTKHDGKIDKEEWRNLVLR 194 (226)
Q Consensus 124 ~~~~F~~~D~d~~G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~dG~Is~~eF~~~~~~ 194 (226)
.+.-|..+|.|..|+++.+++.++++.. +.+.+++...+++ ++.|.+.+|.+...||.+.+..
T Consensus 595 ~~~rf~~lD~~k~~~~~i~~v~~vlk~~----~~~~d~~~~~~~l----~ea~~~~~g~v~l~e~~q~~s~ 657 (680)
T KOG0042|consen 595 RKTRFAFLDADKKAYQAIADVLKVLKSE----NVGWDEDRLHEEL----QEADENLNGFVELREFLQLMSA 657 (680)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHHHHHh----cCCCCHHHHHHHH----HHHHHhhcceeeHHHHHHHHHH
Confidence 4567888999999999999999996554 6788888877777 7888888999999999988864
No 133
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=83.98 E-value=3.6 Score=34.26 Aligned_cols=88 Identities=19% Similarity=0.353 Sum_probs=54.0
Q ss_pred HHHHhhcccCCCCCCccHHHHHHHHhc-------cCCcchH----------HHHHHHHHHcCCCCCCccHHHHHHHHHhh
Q 027239 52 ELFKKISSAVIDDGLINKEEFQLALFK-------TNKKESL----------FADRVFDLFDTKHNGILDFEEFARALSIF 114 (226)
Q Consensus 52 ~~F~~~D~~~~~~G~i~~~ef~~~l~~-------~~~~~~~----------~~~~lf~~~d~~~~g~i~~~eF~~~~~~~ 114 (226)
..|...|.| ++|.++..++..++.. .....+. +.+.++..+|.|.+..|+.+||+..-...
T Consensus 248 TFF~LHD~N--sDGfldeqELEaLFtkELEKvYdpkNeeDDM~EmeEErlRMREHVMk~vDtNqDRlvtleEFL~~t~~k 325 (442)
T KOG3866|consen 248 TFFALHDLN--SDGFLDEQELEALFTKELEKVYDPKNEEDDMKEMEEERLRMREHVMKQVDTNQDRLVTLEEFLNDTDNK 325 (442)
T ss_pred hheeeeccC--CcccccHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHHHhhhhhc
Confidence 356666666 9999999998866522 1111111 13457888999999999999999876543
Q ss_pred CCCCCcHHHHHHHHHHhcCCCCCceeHHHHHHHH
Q 027239 115 HPNSPIDDKIEFSFQLYDLKQQGFIERQEVKQMV 148 (226)
Q Consensus 115 ~~~~~~~~~~~~~F~~~D~d~~G~I~~~e~~~~l 148 (226)
... +..+. |.-. +.....|.+|+..+-
T Consensus 326 ef~-~p~e~----WEtl--~q~~~yTeEEL~~fE 352 (442)
T KOG3866|consen 326 EFN-PPKEE----WETL--GQKKVYTEEELQQFE 352 (442)
T ss_pred ccC-Ccchh----hhhh--cccccccHHHHHHHH
Confidence 331 22222 2222 223466777777653
No 134
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=83.97 E-value=6.3 Score=29.45 Aligned_cols=65 Identities=14% Similarity=0.196 Sum_probs=41.3
Q ss_pred HHHHHHh---cCCCCCceeHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHh
Q 027239 125 EFSFQLY---DLKQQGFIERQEVKQMVVATLTESGMNLSDDVIESIIDKTFEEADTKHDGKIDKEEWRNLVLR 194 (226)
Q Consensus 125 ~~~F~~~---D~d~~G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~dG~Is~~eF~~~~~~ 194 (226)
+.+|..| -..+...++-..|..+++.+ .-.+..++...++-++ ..+-..+...|+|++|+.+|..
T Consensus 2 ~~~F~~f~~fG~~~~~~m~~~~F~Kl~kD~-~i~d~k~t~tdvDiiF----~Kvk~k~~~~I~f~~F~~aL~~ 69 (154)
T PF05517_consen 2 EAVFKAFASFGKKNGTEMDSKNFAKLCKDC-GIIDKKLTSTDVDIIF----SKVKAKGARKITFEQFLEALAE 69 (154)
T ss_dssp HHHHHHHHCSSTSTSSEEEHHHHHHHHHHT-SS--SSS-HHHHHHHH----HHHT-SS-SEEEHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCccccccHHHHHHHHHHc-CCCCCCCchHHHHHHH----HHhhcCCCcccCHHHHHHHHHH
Confidence 4455555 34445679999999997664 3334557777755444 6765555667999999999864
No 135
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=82.41 E-value=4.3 Score=38.62 Aligned_cols=70 Identities=13% Similarity=0.123 Sum_probs=55.3
Q ss_pred HHHHHHHHHhcCCCCCceeHHHHHHHHHHHHhhcCCCCCH-HHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhC
Q 027239 122 DKIEFSFQLYDLKQQGFIERQEVKQMVVATLTESGMNLSD-DVIESIIDKTFEEADTKHDGKIDKEEWRNLVLRH 195 (226)
Q Consensus 122 ~~~~~~F~~~D~d~~G~I~~~e~~~~l~~~~~~~~~~~~~-~~~~~~~~~~f~~~d~~~dG~Is~~eF~~~~~~~ 195 (226)
.+++..|..++....|.++.+++...+.. .|....+ ++...-+..+....|++..|++++.+|...|.+.
T Consensus 747 ~ElrAle~~~~~~d~~aa~~e~~~~~Lms----lg~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~R~ 817 (890)
T KOG0035|consen 747 DELRALENEQDKIDGGAASPEELLRCLMS----LGYNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLERE 817 (890)
T ss_pred HHHHHHHhHHHHhhcccCCHHHHHHHHHh----cCcccchhHHHHHHHHHHHhccCcccccceeHHHHHhHhhhh
Confidence 45889999999999999999999998544 4777665 4444555556677788888999999999998764
No 136
>PLN02952 phosphoinositide phospholipase C
Probab=79.84 E-value=23 Score=32.68 Aligned_cols=85 Identities=14% Similarity=0.080 Sum_probs=57.7
Q ss_pred CCCCccHHHHHHHHhccC---CcchHHHHHHHHHHcCCCCCCccHHHHHHHHHhhCCCC-CcHHHHHHHHHHh-------
Q 027239 63 DDGLINKEEFQLALFKTN---KKESLFADRVFDLFDTKHNGILDFEEFARALSIFHPNS-PIDDKIEFSFQLY------- 131 (226)
Q Consensus 63 ~~G~i~~~ef~~~l~~~~---~~~~~~~~~lf~~~d~~~~g~i~~~eF~~~~~~~~~~~-~~~~~~~~~F~~~------- 131 (226)
+.|.++.++|..+.+... ..+.+.+..+|..+..++ +.++.++|..++....... ...+.+..++..+
T Consensus 13 ~~g~l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~~~~-~~mt~~~l~~FL~~~Q~e~~~~~~~~~~i~~~~~~~~~~~ 91 (599)
T PLN02952 13 DSGSYNYKMFNLFNRKFKITEAEPPDDVKDVFCKFSVGG-GHMGADQLRRFLVLHQDELDCTLAEAQRIVEEVINRRHHV 91 (599)
T ss_pred cCCCcCHHHHHHHHHHhccccCCChHHHHHHHHHHhCCC-CccCHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHhhcccc
Confidence 468999999986654432 224566899999996644 6799999999998766532 2344455555433
Q ss_pred cCCCCCceeHHHHHHHH
Q 027239 132 DLKQQGFIERQEVKQMV 148 (226)
Q Consensus 132 D~d~~G~I~~~e~~~~l 148 (226)
...+.+.++.+.|..+|
T Consensus 92 ~~~~~~~l~~~~F~~~l 108 (599)
T PLN02952 92 TRYTRHGLNLDDFFHFL 108 (599)
T ss_pred ccccccCcCHHHHHHHH
Confidence 11233568999999986
No 137
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=78.83 E-value=4.1 Score=40.70 Aligned_cols=56 Identities=21% Similarity=0.422 Sum_probs=42.1
Q ss_pred HHhhcccCCCCCCccHHHHHHHHhccCCcchHHHHHHHHHHcCCCCCCccHHHHHHHH
Q 027239 54 FKKISSAVIDDGLINKEEFQLALFKTNKKESLFADRVFDLFDTKHNGILDFEEFARAL 111 (226)
Q Consensus 54 F~~~D~~~~~~G~i~~~ef~~~l~~~~~~~~~~~~~lf~~~d~~~~g~i~~~eF~~~~ 111 (226)
|..+|++ +.|.|+..+|..++.+...-....++-+......|.+..++|++|+.-+
T Consensus 4063 fkeydpd--gkgiiskkdf~kame~~k~ytqse~dfllscae~dend~~~y~dfv~rf 4118 (5019)
T KOG2243|consen 4063 FKEYDPD--GKGIISKKDFHKAMEGHKHYTQSEIDFLLSCAEADENDMFDYEDFVDRF 4118 (5019)
T ss_pred chhcCCC--CCccccHHHHHHHHhccccchhHHHHHHHHhhccCccccccHHHHHHHh
Confidence 5567888 9999999999999866543333334566777777788899999998754
No 138
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=77.98 E-value=5.5 Score=36.13 Aligned_cols=91 Identities=16% Similarity=0.234 Sum_probs=60.9
Q ss_pred hcCCCHHHHHHHHHHHHhhcccCCCCCCccHHHHHHHHhccCCcc---hHHHHHHHHHHcCCCCCCccHHHHHHHHHhhC
Q 027239 39 ETVFSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTNKKE---SLFADRVFDLFDTKHNGILDFEEFARALSIFH 115 (226)
Q Consensus 39 ~~~~s~~~i~~l~~~F~~~D~~~~~~G~i~~~ef~~~l~~~~~~~---~~~~~~lf~~~d~~~~g~i~~~eF~~~~~~~~ 115 (226)
...++..-++.+.++|.++|.+ +||-++.+|+..++...+..+ .++.... -.+..|.+++.-|+..++.+.
T Consensus 306 s~ELs~~~~~Fl~~~f~~~D~d--~Dg~L~p~El~~LF~~~P~~pW~~~~~~~~t----~~~~~G~ltl~g~l~~WsL~T 379 (625)
T KOG1707|consen 306 SVELSPKGYRFLVDVFEKFDRD--NDGALSPEELKDLFSTAPGSPWTSSPYKDST----VKNERGWLTLNGFLSQWSLMT 379 (625)
T ss_pred ceeccHHHHHHHHHHHHhccCC--CCCCcCHHHHHHHhhhCCCCCCCCCcccccc----eecccceeehhhHHHHHHHHh
Confidence 4577899999999999999999 999999999998775433221 1111111 112568899999999988766
Q ss_pred CCCCcHHHHHHHHHHhcCCC
Q 027239 116 PNSPIDDKIEFSFQLYDLKQ 135 (226)
Q Consensus 116 ~~~~~~~~~~~~F~~~D~d~ 135 (226)
........-..+|--|..++
T Consensus 380 lld~~~t~~~L~Ylgf~~~~ 399 (625)
T KOG1707|consen 380 LLDPRRTLEYLAYLGFPTDA 399 (625)
T ss_pred hccHHHHHHHHHhcCCcccc
Confidence 53222222344455555553
No 139
>KOG2557 consensus Uncharacterized conserved protein, contains TLDc domain [Function unknown]
Probab=77.25 E-value=20 Score=30.66 Aligned_cols=156 Identities=17% Similarity=0.257 Sum_probs=86.7
Q ss_pred CHHHHHHHHHHHHhhcccCCCCCCccHHHHHHHHhccC--CcchHHHHHHHHHHcCCC-CCCccHHHHHHHHHhhCCCCC
Q 027239 43 SVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTN--KKESLFADRVFDLFDTKH-NGILDFEEFARALSIFHPNSP 119 (226)
Q Consensus 43 s~~~i~~l~~~F~~~D~~~~~~G~i~~~ef~~~l~~~~--~~~~~~~~~lf~~~d~~~-~g~i~~~eF~~~~~~~~~~~~ 119 (226)
+.+..+.|....+..... ...+.+.+.+...-.... .-.......+|....... +..++++.+......... ..
T Consensus 15 naE~~~~l~~~kk~~~~g--a~~k~t~dq~v~~~~~~~~~~l~e~~~q~~f~~vk~~~q~~~~~l~k~~~~~~~~~~-gt 91 (427)
T KOG2557|consen 15 NAETQKKLDDLKKLFVSG--ASNKQTNDQYVSYPVFQEYFGLSESLGQRMFDMVKQRRQDDKMTLEKLVIAKATYEK-GT 91 (427)
T ss_pred CHHHHHHHHHHhhccccc--cchhhhhhhhhhcccccchhhhhhhccceEeeeccCccCCccchHHHHhhHHhhhcc-Cc
Confidence 344555666666555433 445677777665321100 000111233444443332 346888888877666555 46
Q ss_pred cHHHHHHHHHHhcCCCCCceeHHHHHHHHHHHHhhcCC-CCCH-HH-HHHHHHHHH---HHhCCCC---CCcccHHHHHH
Q 027239 120 IDDKIEFSFQLYDLKQQGFIERQEVKQMVVATLTESGM-NLSD-DV-IESIIDKTF---EEADTKH---DGKIDKEEWRN 190 (226)
Q Consensus 120 ~~~~~~~~F~~~D~d~~G~I~~~e~~~~l~~~~~~~~~-~~~~-~~-~~~~~~~~f---~~~d~~~---dG~Is~~eF~~ 190 (226)
..+....++...|.+++|.....++.+.+...++..-. ..+. ++ +.......| +.+..+. -+--.++.|..
T Consensus 92 ~dq~a~mL~~~~~~sgn~~~~~~q~eQ~~~~vlks~~~~ess~~es~~~~~~d~af~~~~~~~ke~e~t~p~~~le~~~s 171 (427)
T KOG2557|consen 92 DDQIAEMLYQTLDVNGNGVLSRSQLEQFLVVVLKSVFSTESSDAESSDYKKMDDAFLNAATFSKEDEGTEPGMSLEDFRS 171 (427)
T ss_pred ccHHHHHHHHHHhhccccccchhHHHHHHHHHhhheeeecccchhhhhhhhhhccccchhhhccccccCCCchhHHHHhh
Confidence 67778889999999999999999999988776554221 1111 11 111111111 1111122 33467888888
Q ss_pred HHHhChhhhhh
Q 027239 191 LVLRHPSLLKN 201 (226)
Q Consensus 191 ~~~~~~~l~~~ 201 (226)
++.-.|-+.+.
T Consensus 172 ~~p~f~~i~r~ 182 (427)
T KOG2557|consen 172 WCPFFPTIRKF 182 (427)
T ss_pred hchHHHHHHHH
Confidence 88777766663
No 140
>PLN02228 Phosphoinositide phospholipase C
Probab=76.95 E-value=15 Score=33.60 Aligned_cols=94 Identities=17% Similarity=0.264 Sum_probs=56.2
Q ss_pred CcHHHHHHHHHHhcCCCCCceeHHHHHHHHHHHHhhcCC-CCCHHHHHHHHHHHHHHhCCC----CCCcccHHHHHHHHH
Q 027239 119 PIDDKIEFSFQLYDLKQQGFIERQEVKQMVVATLTESGM-NLSDDVIESIIDKTFEEADTK----HDGKIDKEEWRNLVL 193 (226)
Q Consensus 119 ~~~~~~~~~F~~~D~d~~G~I~~~e~~~~l~~~~~~~~~-~~~~~~~~~~~~~~f~~~d~~----~dG~Is~~eF~~~~~ 193 (226)
...+++..+|..+..+ +.++.++|..+|... -+. ..+.+.+.+++ ..+... ..|.++.+.|..++.
T Consensus 21 ~~~~ei~~if~~~s~~--~~~t~~~~~~FL~~~---Q~~~~~~~~~~~~i~----~~~~~~~~~~~~~~~~~~gF~~yl~ 91 (567)
T PLN02228 21 EPPVSIKRLFEAYSRN--GKMSFDELLRFVSEV---QGERHAGLDYVQDIF----HSVKHHNVFHHHGLVHLNAFYRYLF 91 (567)
T ss_pred CCcHHHHHHHHHhcCC--CccCHHHHHHHHHHh---cCCccCCHHHHHHHH----HHhccchhhcccCccCHHHHHHHhc
Confidence 3567789999988643 579999999987554 222 24445565555 444322 346799999999997
Q ss_pred hChhhhhhhhccccccccccc-ccccccc
Q 027239 194 RHPSLLKNMTLQYLKDITTTF-PSFVFHS 221 (226)
Q Consensus 194 ~~~~l~~~~~~~~~~~~~~~~-~~~~~~~ 221 (226)
..-...-.....-.++|++-. -+||.-+
T Consensus 92 s~~n~~~~~~~~v~qdm~~PLs~YfI~SS 120 (567)
T PLN02228 92 SDTNSPLPMSGQVHHDMKAPLSHYFVYTG 120 (567)
T ss_pred CcccCCCCccccccccCCCchhhheeecc
Confidence 631111001112246777765 4555433
No 141
>KOG4004 consensus Matricellular protein Osteonectin/SPARC/BM-40 [Extracellular structures]
Probab=75.58 E-value=1.5 Score=34.08 Aligned_cols=55 Identities=22% Similarity=0.316 Sum_probs=37.4
Q ss_pred HHHHcCC-CCCCccHHHHHHHHHhhCCCCCcHHHHHHHHHHhcCCCCCceeHHHHHHHH
Q 027239 91 FDLFDTK-HNGILDFEEFARALSIFHPNSPIDDKIEFSFQLYDLKQQGFIERQEVKQMV 148 (226)
Q Consensus 91 f~~~d~~-~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~I~~~e~~~~l 148 (226)
|-.+|.. .+|.++-.|+..+-+.+. +-+.-+...|.-.|.|++|+|+++|....+
T Consensus 193 f~qld~~p~d~~~sh~el~pl~ap~i---pme~c~~~f~e~cd~~nd~~ial~ew~~c~ 248 (259)
T KOG4004|consen 193 FGQLDQHPIDGYLSHTELAPLRAPLI---PMEHCTTRFFETCDLDNDKYIALDEWAGCF 248 (259)
T ss_pred eccccCCCccccccccccccccCCcc---cHHhhchhhhhcccCCCCCceeHHHhhccc
Confidence 3444443 378888888776554332 234446778888899999999999888763
No 142
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=74.42 E-value=16 Score=24.80 Aligned_cols=83 Identities=13% Similarity=0.071 Sum_probs=47.0
Q ss_pred CCCCccHHHHHHHH---hccCCcchHHHHHHHHHHcCCCCCCccHHHHHHHHHhhCCCCCcHHHHHHHHHHhcCCCCCce
Q 027239 63 DDGLINKEEFQLAL---FKTNKKESLFADRVFDLFDTKHNGILDFEEFARALSIFHPNSPIDDKIEFSFQLYDLKQQGFI 139 (226)
Q Consensus 63 ~~G~i~~~ef~~~l---~~~~~~~~~~~~~lf~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~I 139 (226)
.||.++..|...+- .....-.......+...+........++.+|...+...........-+..+++.--.| |.+
T Consensus 12 aDG~v~~~E~~~i~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~L~~vA~AD--G~~ 89 (104)
T cd07313 12 ADGEYDEEERAAIDRLLAERFGLDAEEAAELLAEAEALEEEAPDLYEFTSLIKEHFDYEERLELVEALWEVAYAD--GEL 89 (104)
T ss_pred HcCCCCHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc--CCC
Confidence 46778877755332 2211112233455666665555556888898888765443223344466666666554 667
Q ss_pred eHHHHHHH
Q 027239 140 ERQEVKQM 147 (226)
Q Consensus 140 ~~~e~~~~ 147 (226)
+..|-.-+
T Consensus 90 ~~~E~~~l 97 (104)
T cd07313 90 DEYEEHLI 97 (104)
T ss_pred CHHHHHHH
Confidence 77766443
No 143
>PF04876 Tenui_NCP: Tenuivirus major non-capsid protein; InterPro: IPR006960 This entry contains the tenuivirus major non-capsid protein. Proteins accumulate in large amounts in tenuivirus infected cells. They are found in the inclusion bodies that are formed after infection [].
Probab=73.43 E-value=25 Score=26.03 Aligned_cols=48 Identities=23% Similarity=0.435 Sum_probs=31.4
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhChhhhhhhhcccc
Q 027239 157 MNLSDDVIESIIDKTFEEADTKHDGKIDKEEWRNLVLRHPSLLKNMTLQYL 207 (226)
Q Consensus 157 ~~~~~~~~~~~~~~~f~~~d~~~dG~Is~~eF~~~~~~~~~l~~~~~~~~~ 207 (226)
..++.+++..++..+.+.+.+++ ++-+++...+.+-|.+...+-.|++
T Consensus 126 n~MSk~Qik~L~~~Ii~~akae~---~dtE~Ye~vwkKmPaY~~nil~~~l 173 (175)
T PF04876_consen 126 NRMSKDQIKTLCEQIIEMAKAES---SDTEHYEKVWKKMPAYFSNILQPYL 173 (175)
T ss_pred chhhHHHHHHHHHHHHHHHhccC---CchHHHHHHHHHhhHHHHHHHHHHh
Confidence 34555555555655555554443 5668888888888988887766654
No 144
>PLN02222 phosphoinositide phospholipase C 2
Probab=72.49 E-value=20 Score=32.85 Aligned_cols=92 Identities=13% Similarity=0.265 Sum_probs=58.9
Q ss_pred cHHHHHHHHHHhcCCCCCceeHHHHHHHHHHHHhhcC-CCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhCh-h
Q 027239 120 IDDKIEFSFQLYDLKQQGFIERQEVKQMVVATLTESG-MNLSDDVIESIIDKTFEEADTKHDGKIDKEEWRNLVLRHP-S 197 (226)
Q Consensus 120 ~~~~~~~~F~~~D~d~~G~I~~~e~~~~l~~~~~~~~-~~~~~~~~~~~~~~~f~~~d~~~dG~Is~~eF~~~~~~~~-~ 197 (226)
...++..+|..|.. ++.++.++|..+|... -+ ...+.+.+.+++... .. ..+.+.++++.|..|+...- .
T Consensus 23 ~~~ei~~if~~~~~--~~~mt~~~l~~FL~~~---Q~~~~~~~~~~~~ii~~~-~~--~~~~~~~~~~gF~~yL~s~~n~ 94 (581)
T PLN02222 23 APREIKTIFEKYSE--NGVMTVDHLHRFLIDV---QKQDKATREDAQSIINSA-SS--LLHRNGLHLDAFFKYLFGDNNP 94 (581)
T ss_pred CcHHHHHHHHHhcC--CCCcCHHHHHHHHHHh---cCCccCCHHHHHHHHHhh-hh--hhhccCcCHHHHHHHhcCCCCC
Confidence 34579999999864 4799999999997554 22 235677777777431 11 12356799999999998621 1
Q ss_pred hhhhhhccccccccccc-ccccccc
Q 027239 198 LLKNMTLQYLKDITTTF-PSFVFHS 221 (226)
Q Consensus 198 l~~~~~~~~~~~~~~~~-~~~~~~~ 221 (226)
.+. ...-.++|++-. -+||.-+
T Consensus 95 ~~~--~~~v~qDm~~Pls~YfI~SS 117 (581)
T PLN02222 95 PLA--LHEVHHDMDAPISHYFIFTG 117 (581)
T ss_pred CCc--cccccccCCCchhhheeecc
Confidence 111 123367788766 4566543
No 145
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=72.23 E-value=18 Score=26.06 Aligned_cols=72 Identities=13% Similarity=0.218 Sum_probs=46.8
Q ss_pred HHHHHHHHHhcCCC--CCceeHHHHHHHHHHHHhhcC---CCC---C----HHHHHHHHHHHHHHhCCCCCCcccHHHHH
Q 027239 122 DKIEFSFQLYDLKQ--QGFIERQEVKQMVVATLTESG---MNL---S----DDVIESIIDKTFEEADTKHDGKIDKEEWR 189 (226)
Q Consensus 122 ~~~~~~F~~~D~d~--~G~I~~~e~~~~l~~~~~~~~---~~~---~----~~~~~~~~~~~f~~~d~~~dG~Is~~eF~ 189 (226)
..+..+|+....++ +..|+..++..++..+..... +.. + +.-++-+++-+...+|++++|.|+.-.|.
T Consensus 41 ~~v~~~f~~~~l~~~~d~~l~v~~l~~~L~~iy~~l~~~~p~~~~i~~~~v~~a~~L~ln~Ll~vyD~~rtG~I~vls~K 120 (127)
T PF09068_consen 41 SNVIEAFREHGLNQSNDSSLSVSQLETLLSSIYEFLNKRLPTLHQIPSRPVDLAVDLLLNWLLNVYDSQRTGKIRVLSFK 120 (127)
T ss_dssp HHHHHHHHHTT---T-TSEEEHHHHHHHHHHHHHHHHHHSTTS--HH-----HHHHHHHHHHHHHH-TT--SEEEHHHHH
T ss_pred HHHHHHHHHcCCCcccCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCchhHHHHHHHHHHHHHHHhCCCCCCeeehhHHH
Confidence 44666777665433 467999999999988874221 111 1 24566677778899999999999999887
Q ss_pred HHHH
Q 027239 190 NLVL 193 (226)
Q Consensus 190 ~~~~ 193 (226)
..+.
T Consensus 121 vaL~ 124 (127)
T PF09068_consen 121 VALI 124 (127)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
No 146
>PF01023 S_100: S-100/ICaBP type calcium binding domain; InterPro: IPR013787 The calcium-binding domain found in S100 and CaBP-9k proteins is a subfamily of the EF-hand calcium-binding domain []. S100s are small dimeric acidic calcium and zinc-binding proteins abundant in the brain, with S100B playing an important role in modulating the proliferation and differentiation of neurons and glia cells []. S100 proteins have two different types of calcium-binding sites: a low affinity one with a special structure, and a 'normal' EF-hand type high-affinity site. Calbindin-D9k (CaBP-9k) also belong to this family of proteins, but it does not form dimers. CaBP-9k is a cytosolic protein expressed in a variety of tissues. Although its precise function is unknown, it appears to be under the control of the steroid hormones oestrogen and progesterone in the female reproductive system []. In the intestine, CaBP-9k may be involved in calcium absorption by mediating intracellular diffusion []. This entry represents a subdomain of the calcium-binding domain found in S100, CaBP-9k, and related proteins.; PDB: 2RGI_A 4DUQ_B 2KAY_B 2KAX_A 2CNP_A 1CNP_A 1A03_A 1JWD_B 2JTT_A 1XK4_B ....
Probab=71.99 E-value=13 Score=21.44 Aligned_cols=33 Identities=27% Similarity=0.386 Sum_probs=23.5
Q ss_pred HHHHHHHHHHhhcccCCCCCCccHHHHHHHHhc
Q 027239 46 EIEALYELFKKISSAVIDDGLINKEEFQLALFK 78 (226)
Q Consensus 46 ~i~~l~~~F~~~D~~~~~~G~i~~~ef~~~l~~ 78 (226)
-+..+..+|.++........+++..||..+|..
T Consensus 4 ai~~iI~vFhkYa~~~Gd~~~Lsk~Elk~Ll~~ 36 (44)
T PF01023_consen 4 AIETIIDVFHKYAGKEGDKDTLSKKELKELLEK 36 (44)
T ss_dssp HHHHHHHHHHHHHTSSSSTTSEEHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCCCeEcHHHHHHHHHH
Confidence 456777888888743224678999999988754
No 147
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=70.95 E-value=3.1 Score=26.63 Aligned_cols=56 Identities=16% Similarity=0.394 Sum_probs=32.5
Q ss_pred HHHHHHHHhhcccCCCCCCccHHHHHHHHhccCCcchHHHHHHHHHHc-C---CCCCCccHHHHHH
Q 027239 48 EALYELFKKISSAVIDDGLINKEEFQLALFKTNKKESLFADRVFDLFD-T---KHNGILDFEEFAR 109 (226)
Q Consensus 48 ~~l~~~F~~~D~~~~~~G~i~~~ef~~~l~~~~~~~~~~~~~lf~~~d-~---~~~g~i~~~eF~~ 109 (226)
..+...|+.+.. ++++||.++|++.| ......++..-+..+. . ...|..+|..|+.
T Consensus 6 eqv~~aFr~lA~---~KpyVT~~dLr~~l---~pe~aey~~~~Mp~~~~~~~~~~~~~~DY~~f~~ 65 (69)
T PF08726_consen 6 EQVEEAFRALAG---GKPYVTEEDLRRSL---TPEQAEYCISRMPPYEGPDGDAIPGAYDYESFTN 65 (69)
T ss_dssp HHHHHHHHHHCT---SSSCEEHHHHHHHS----CCCHHHHHCCSEC--SSS----TTEEECHHHHC
T ss_pred HHHHHHHHHHHc---CCCcccHHHHHHHc---CcHHHHHHHHHCcccCCCCcCCCCCCcCHHHHHH
Confidence 356777888854 68999999999876 2222233333223332 1 1236688888764
No 148
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=70.89 E-value=8.6 Score=28.21 Aligned_cols=71 Identities=17% Similarity=0.165 Sum_probs=34.8
Q ss_pred CCCccHHHHHHHHhccCCcchHHHHHHHHHHcCC-------CCCCccHHHHHHHHHhhCCCCCcHHHHHHHHHHhcCCC
Q 027239 64 DGLINKEEFQLALFKTNKKESLFADRVFDLFDTK-------HNGILDFEEFARALSIFHPNSPIDDKIEFSFQLYDLKQ 135 (226)
Q Consensus 64 ~G~i~~~ef~~~l~~~~~~~~~~~~~lf~~~d~~-------~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~F~~~D~d~ 135 (226)
-+.++.+||...= .-..-....++.++..|..+ ..+.|+|+.|..+|.........++-.+.+|..|-...
T Consensus 5 ~~~lsp~eF~qLq-~y~eys~kklkdvl~eF~~~g~~~~~~~~~~Id~egF~~Fm~~yLe~d~P~~lc~hLF~sF~~~~ 82 (138)
T PF14513_consen 5 WVSLSPEEFAQLQ-KYSEYSTKKLKDVLKEFHGDGSLAKYNPEEPIDYEGFKLFMKTYLEVDLPEDLCQHLFLSFQKKP 82 (138)
T ss_dssp -S-S-HHHHHHHH-HHHHH----HHHHHHHH-HTSGGGGGEETTEE-HHHHHHHHHHHTT-S--HHHHHHHHHHS----
T ss_pred eeccCHHHHHHHH-HHHHHHHHHHHHHHHHHhcCCcccccCCCCCcCHHHHHHHHHHHHcCCCCHHHHHHHHHHHhCcc
Confidence 3456666666431 10000111234455555322 34579999999999887765566777889999886554
No 149
>PF08976 DUF1880: Domain of unknown function (DUF1880); InterPro: IPR015070 This entry represents EF-hand calcium-binding domain-containing protein 6 that negatively regulates the androgen receptor by recruiting histone deacetylase complex, and protein DJ-1 antagonises this inhibition by abrogation of this complex [].; PDB: 1WLZ_C.
Probab=67.25 E-value=5.1 Score=28.33 Aligned_cols=33 Identities=15% Similarity=0.342 Sum_probs=21.9
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhC
Q 027239 159 LSDDVIESIIDKTFEEADTKHDGKIDKEEWRNLVLRH 195 (226)
Q Consensus 159 ~~~~~~~~~~~~~f~~~d~~~dG~Is~~eF~~~~~~~ 195 (226)
+++++++.+. .++-.|..|.|.|.||+.-+...
T Consensus 4 LtDeQFdrLW----~e~Pvn~~GrLkY~eFL~kfs~e 36 (118)
T PF08976_consen 4 LTDEQFDRLW----NEMPVNAKGRLKYQEFLSKFSSE 36 (118)
T ss_dssp --HHHHHHHH----TTS-B-TTS-EEHHHHHHHT---
T ss_pred ccHHHhhhhh----hhCcCCccCCEeHHHHHHHcccc
Confidence 6778888777 78889999999999999877643
No 150
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=66.12 E-value=11 Score=24.14 Aligned_cols=36 Identities=19% Similarity=0.313 Sum_probs=29.5
Q ss_pred hcCCCHHHHHHHHHHHHhhcccCCCCCCccHHHHHHHHhcc
Q 027239 39 ETVFSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKT 79 (226)
Q Consensus 39 ~~~~s~~~i~~l~~~F~~~D~~~~~~G~i~~~ef~~~l~~~ 79 (226)
...+++.....+...|+.+ +.+.|++++|..-++..
T Consensus 19 ~~~l~~~~~~~l~~~Y~~~-----k~~kIsR~~fvr~lR~I 54 (70)
T PF12174_consen 19 SKHLPPSKMDLLQKHYEEF-----KKKKISREEFVRKLRQI 54 (70)
T ss_pred HHHCCHHHHHHHHHHHHHH-----HHCCCCHHHHHHHHHHH
Confidence 4677888888999999888 78889999998877553
No 151
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=64.03 E-value=4.8 Score=38.64 Aligned_cols=72 Identities=24% Similarity=0.355 Sum_probs=60.7
Q ss_pred CCCHHHHHHHHHHHHhhcccCCCCCCccHHHHHHHHhccCCcchHHHHHHHHHHcCCCCCCccHHHHHHHHHhhC
Q 027239 41 VFSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTNKKESLFADRVFDLFDTKHNGILDFEEFARALSIFH 115 (226)
Q Consensus 41 ~~s~~~i~~l~~~F~~~D~~~~~~G~i~~~ef~~~l~~~~~~~~~~~~~lf~~~d~~~~g~i~~~eF~~~~~~~~ 115 (226)
..++.+...+.++|...|.+ ++|.|+..+....+...+.... .+..++...|..+.|.+++.+|...+..+.
T Consensus 276 ~vsp~d~~~~~~if~q~d~~--~dG~I~s~~~~~~f~~~gl~~~-~l~~~w~l~d~~n~~~ls~~ef~~~~~~~~ 347 (847)
T KOG0998|consen 276 KVSPSDKQKYSKIFSQVDKD--NDGSISSNEARNIFLPFGLSKP-RLAHVWLLADTQNTGTLSKDEFALAMHLLE 347 (847)
T ss_pred ccChHHHHHHHHHHHhcccc--CCCcccccccccccccCCCChh-hhhhhhhhcchhccCcccccccchhhhhhh
Confidence 67888999999999999999 9999999999887766554443 358899999999999999999988776543
No 152
>KOG2871 consensus Uncharacterized conserved protein [Function unknown]
Probab=62.09 E-value=7.1 Score=33.36 Aligned_cols=63 Identities=17% Similarity=0.278 Sum_probs=41.6
Q ss_pred cHHHHHHHHHHhcCCCCCceeHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHH
Q 027239 120 IDDKIEFSFQLYDLKQQGFIERQEVKQMVVATLTESGMNLSDDVIESIIDKTFEEADTKHDGKIDKEEWR 189 (226)
Q Consensus 120 ~~~~~~~~F~~~D~d~~G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~dG~Is~~eF~ 189 (226)
..+.++++|+.+|..++|+|+-.-+..+++.. +..+++...-.+.+ +..|+..-|.|-.++|.
T Consensus 307 ~s~q~rR~f~a~d~~d~nfis~s~~~~vm~~~----N~~vse~a~v~l~~---~~l~pE~~~iil~~d~l 369 (449)
T KOG2871|consen 307 PSEQLRRNFHAYDPEDNNFISCSGLQIVMTAL----NRLVSEPAYVMLMR---QPLDPESLGIILLEDFL 369 (449)
T ss_pred CCHHHHhhhhccCccCCCeeecHHHHHHHHHh----cccccCHHHHHHhc---CccChhhcceEEecccc
Confidence 45679999999999999999999999987665 43444432222221 45555555555555444
No 153
>KOG4301 consensus Beta-dystrobrevin [Cytoskeleton]
Probab=61.93 E-value=27 Score=29.66 Aligned_cols=117 Identities=15% Similarity=0.262 Sum_probs=78.0
Q ss_pred HHHHHHHcCCCCCCccHHHHHHHHHhhCCCCCcHHHHHHHHHHhcCCCCCceeHHHHHHHHHHHHhh-------cCCCCC
Q 027239 88 DRVFDLFDTKHNGILDFEEFARALSIFHPNSPIDDKIEFSFQLYDLKQQGFIERQEVKQMVVATLTE-------SGMNLS 160 (226)
Q Consensus 88 ~~lf~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~I~~~e~~~~l~~~~~~-------~~~~~~ 160 (226)
.-+...+|+.+.|.++--.-...++.++. +...++++.+|.... |.+|.+..-.+-+++...++. .....+
T Consensus 113 aflLaA~ds~~~g~~~vfavkialatlc~-gk~~dklryIfs~is-ds~gim~~i~~~~fl~evlslpT~v~e~psfg~t 190 (434)
T KOG4301|consen 113 AFLLAAEDSEGQGKQQVFAVKIALATLCG-GKIKDKLRYIFSLIS-DSRGIMQEIQRDQFLHEVLSLPTAVFEGPSFGYT 190 (434)
T ss_pred HHHHhhcCccCCCCceeecchhhhhhhcc-chHHHHHHHHHHHHc-cchHHHHHHHHHHHHHHHHcCCchhhcCCCcchH
Confidence 44567789999999888777777777776 577888999999876 446887777777776666543 223334
Q ss_pred HHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhCh--hhhhhhh-cccccccccccc
Q 027239 161 DDVIESIIDKTFEEADTKHDGKIDKEEWRNLVLRHP--SLLKNMT-LQYLKDITTTFP 215 (226)
Q Consensus 161 ~~~~~~~~~~~f~~~d~~~dG~Is~~eF~~~~~~~~--~l~~~~~-~~~~~~~~~~~~ 215 (226)
+..++..+ . .+.+++.+.|+..+...| -.+.++. +.-+..+.-+|+
T Consensus 191 e~~a~~cf----~-----qqrKv~Ln~fldtl~sdp~p~cl~wlpLmhrla~v~nv~h 239 (434)
T KOG4301|consen 191 ELSARLCF----L-----QQRKVELNQFLDTLMSDPPPQCLVWLPLMHRLATVENVFH 239 (434)
T ss_pred HHHHHHHH----H-----HHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhhcccCC
Confidence 43333222 2 235799999999998764 5555553 344555555553
No 154
>TIGR01848 PHA_reg_PhaR polyhydroxyalkanoate synthesis repressor PhaR. Poly-B-hydroxyalkanoates are lipidlike carbon/energy storage polymers found in granular inclusions. PhaR is a regulatory protein found in general near other proteins associated with polyhydroxyalkanoate (PHA) granule biosynthesis and utilization. It is found to be a DNA-binding homotetramer that is also capable of binding short chain hydroxyalkanoic acids and PHA granules. PhaR may regulate the expression of itself, of the phasins that coat granules, and of enzymes that direct carbon flux into polymers stored in granules.
Probab=58.77 E-value=20 Score=24.99 Aligned_cols=20 Identities=20% Similarity=0.695 Sum_probs=13.3
Q ss_pred HHhcCCCCCceeHHHHHHHH
Q 027239 129 QLYDLKQQGFIERQEVKQMV 148 (226)
Q Consensus 129 ~~~D~d~~G~I~~~e~~~~l 148 (226)
++||...+.+||.+++.+++
T Consensus 10 RLYDT~tS~YITLedi~~lV 29 (107)
T TIGR01848 10 RLYDTETSSYVTLEDIRDLV 29 (107)
T ss_pred cccCCCccceeeHHHHHHHH
Confidence 35666666777777777765
No 155
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=57.47 E-value=42 Score=24.28 Aligned_cols=73 Identities=16% Similarity=0.228 Sum_probs=42.1
Q ss_pred CceeHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhChhhhhhhhccccccccccccc
Q 027239 137 GFIERQEVKQMVVATLTESGMNLSDDVIESIIDKTFEEADTKHDGKIDKEEWRNLVLRHPSLLKNMTLQYLKDITTTFPS 216 (226)
Q Consensus 137 G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~dG~Is~~eF~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 216 (226)
..++.+|+..++..+ |... +.+-.--...++..+.+. ..++-++...+|..+|.+++-=-+-..+.+..+||.
T Consensus 35 ~~~s~~eL~~~l~~~----~~~~--~~lin~~~~~~k~L~~~~-~~ls~~e~i~ll~~~P~LikRPIv~~~~~~~iG~~~ 107 (132)
T PRK13344 35 EPLTKEEILAILTKT----ENGI--ESIVSSKNRYAKALDCDI-EELSVNEVIDLIQENPRILKSPILIDDKRLQVGYKE 107 (132)
T ss_pred CCCCHHHHHHHHHHh----CCCH--HHhhccCcHHHHhCCcch-hcCCHHHHHHHHHhCccceeCcEEEeCCEEEeCCCH
Confidence 468888888886554 3221 111111112334444232 468899999999999988872122344567777753
No 156
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=57.44 E-value=60 Score=22.32 Aligned_cols=61 Identities=20% Similarity=0.345 Sum_probs=35.0
Q ss_pred HHHHHHHhcCCCCCceeHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHh
Q 027239 124 IEFSFQLYDLKQQGFIERQEVKQMVVATLTESGMNLSDDVIESIIDKTFEEADTKHDGKIDKEEWRNLVLR 194 (226)
Q Consensus 124 ~~~~F~~~D~d~~G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~dG~Is~~eF~~~~~~ 194 (226)
+..-|..+.. +|+|....|...+ |.+=+.+-+.+++..+-..-... .+.|+.+|+..+...
T Consensus 32 VE~RFd~La~--dG~L~rs~Fg~CI-------GM~dSkeFA~eLFdALaRrr~i~-~~~I~k~eL~efW~q 92 (100)
T PF08414_consen 32 VEKRFDKLAK--DGLLPRSDFGECI-------GMKDSKEFAGELFDALARRRGIK-GDSITKDELKEFWEQ 92 (100)
T ss_dssp HHHHHHHH-B--TTBEEGGGHHHHH-------T--S-HHHHHHHHHHHHHHTT---SSEE-HHHHHHHHHH
T ss_pred HHHHHHHhCc--CCcccHHHHHHhc-------CCcccHHHHHHHHHHHHHhcCCc-cCCcCHHHHHHHHHH
Confidence 4555666666 6888888888875 44444555555554444444433 457888888877654
No 157
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=56.49 E-value=59 Score=21.94 Aligned_cols=81 Identities=14% Similarity=0.110 Sum_probs=48.0
Q ss_pred CCCccHHHHHHHHHhhCCC-CCcHHHHHHHHHHhcCCCCCceeHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhCC
Q 027239 99 NGILDFEEFARALSIFHPN-SPIDDKIEFSFQLYDLKQQGFIERQEVKQMVVATLTESGMNLSDDVIESIIDKTFEEADT 177 (226)
Q Consensus 99 ~g~i~~~eF~~~~~~~~~~-~~~~~~~~~~F~~~D~d~~G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~ 177 (226)
||.++-.|--.+-..+... ....+....++..+........+..++.+.+.. ..+.+....++..++...-.
T Consensus 13 DG~v~~~E~~~i~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~r~~~l~~L~~vA~A 85 (104)
T cd07313 13 DGEYDEEERAAIDRLLAERFGLDAEEAAELLAEAEALEEEAPDLYEFTSLIKE-------HFDYEERLELVEALWEVAYA 85 (104)
T ss_pred cCCCCHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHH-------hCCHHHHHHHHHHHHHHHHh
Confidence 6778888855444332211 223444555666665544556677777776433 23667777788777777654
Q ss_pred CCCCcccHHHH
Q 027239 178 KHDGKIDKEEW 188 (226)
Q Consensus 178 ~~dG~Is~~eF 188 (226)
| |.++-.|=
T Consensus 86 D--G~~~~~E~ 94 (104)
T cd07313 86 D--GELDEYEE 94 (104)
T ss_pred c--CCCCHHHH
Confidence 4 67766653
No 158
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=52.51 E-value=36 Score=23.71 Aligned_cols=69 Identities=13% Similarity=0.228 Sum_probs=40.3
Q ss_pred CceeHHHHHHHHHHHHhhcCCCCCHHHHHHHHHH---HHHHhCCCCCCcccHHHHHHHHHhChhhhhhhhcccccccccc
Q 027239 137 GFIERQEVKQMVVATLTESGMNLSDDVIESIIDK---TFEEADTKHDGKIDKEEWRNLVLRHPSLLKNMTLQYLKDITTT 213 (226)
Q Consensus 137 G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~---~f~~~d~~~dG~Is~~eF~~~~~~~~~l~~~~~~~~~~~~~~~ 213 (226)
..+|.+|+..++..+ |.. ++++++. .++....+. ..++-++++.+|..+|.+++-=-+-..+.+..+
T Consensus 34 ~~~t~~el~~~l~~~----~~~-----~~~lin~~~~~y~~l~~~~-~~ls~~e~i~ll~~~P~LikRPIi~~~~~~~vG 103 (112)
T cd03034 34 TPPTAAELRELLAKL----GIS-----PRDLLRTKEAPYKELGLAD-PELSDEELIDAMAAHPILIERPIVVTGDGAVLG 103 (112)
T ss_pred CCcCHHHHHHHHHHc----CCC-----HHHHHhcCCchHHHcCCCc-cCCCHHHHHHHHHhCcCcccCCEEEECCEEEEc
Confidence 357888888875443 422 2233322 233433332 468999999999999988872112223445666
Q ss_pred cc
Q 027239 214 FP 215 (226)
Q Consensus 214 ~~ 215 (226)
||
T Consensus 104 ~~ 105 (112)
T cd03034 104 RP 105 (112)
T ss_pred CC
Confidence 64
No 159
>PF05920 Homeobox_KN: Homeobox KN domain; InterPro: IPR008422 This entry represents a homeobox transcription factor KN domain conserved from fungi to human and plants [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3K2A_B 2LK2_A 1X2N_A 2DMN_A.
Probab=51.43 E-value=9.3 Score=21.49 Aligned_cols=28 Identities=25% Similarity=0.285 Sum_probs=20.7
Q ss_pred cCCCCCCCHHHHHhhcCCCHHHHHHHHH
Q 027239 25 KQPRGLEDPEALARETVFSVSEIEALYE 52 (226)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~s~~~i~~l~~ 52 (226)
.|++..++...++..+++|..+|..++.
T Consensus 8 nPYPs~~ek~~L~~~tgls~~Qi~~WF~ 35 (40)
T PF05920_consen 8 NPYPSKEEKEELAKQTGLSRKQISNWFI 35 (40)
T ss_dssp SGS--HHHHHHHHHHHTS-HHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 4666778899999999999999987654
No 160
>PLN02228 Phosphoinositide phospholipase C
Probab=51.31 E-value=95 Score=28.56 Aligned_cols=61 Identities=16% Similarity=0.304 Sum_probs=25.5
Q ss_pred HHHHHHHHHcCCCCCCccHHHHHHHHHhhCCCC-CcHHHHHHHHHHhcCC----CCCceeHHHHHHHH
Q 027239 86 FADRVFDLFDTKHNGILDFEEFARALSIFHPNS-PIDDKIEFSFQLYDLK----QQGFIERQEVKQMV 148 (226)
Q Consensus 86 ~~~~lf~~~d~~~~g~i~~~eF~~~~~~~~~~~-~~~~~~~~~F~~~D~d----~~G~I~~~e~~~~l 148 (226)
.+..+|..+..+ +.++.++|..++....... ...+.+..+|..|... ..|.++.+.|...|
T Consensus 25 ei~~if~~~s~~--~~~t~~~~~~FL~~~Q~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~gF~~yl 90 (567)
T PLN02228 25 SIKRLFEAYSRN--GKMSFDELLRFVSEVQGERHAGLDYVQDIFHSVKHHNVFHHHGLVHLNAFYRYL 90 (567)
T ss_pred HHHHHHHHhcCC--CccCHHHHHHHHHHhcCCccCCHHHHHHHHHHhccchhhcccCccCHHHHHHHh
Confidence 344455444322 2455555555444433211 1223344444444321 12445555555544
No 161
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=51.23 E-value=52 Score=24.14 Aligned_cols=68 Identities=16% Similarity=0.160 Sum_probs=35.8
Q ss_pred CCccHHHHHHHHHhhCCCCCcHHHHHHHHHHhcCCC-------CCceeHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHH
Q 027239 100 GILDFEEFARALSIFHPNSPIDDKIEFSFQLYDLKQ-------QGFIERQEVKQMVVATLTESGMNLSDDVIESIIDKTF 172 (226)
Q Consensus 100 g~i~~~eF~~~~~~~~~~~~~~~~~~~~F~~~D~d~-------~G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~f 172 (226)
+.++..||...-.-..... .+++.+.+.|..+| .+.|+.+-|+.+|++. +..+++++-+ .++|
T Consensus 6 ~~lsp~eF~qLq~y~eys~---kklkdvl~eF~~~g~~~~~~~~~~Id~egF~~Fm~~y---Le~d~P~~lc----~hLF 75 (138)
T PF14513_consen 6 VSLSPEEFAQLQKYSEYST---KKLKDVLKEFHGDGSLAKYNPEEPIDYEGFKLFMKTY---LEVDLPEDLC----QHLF 75 (138)
T ss_dssp S-S-HHHHHHHHHHHHH-------HHHHHHHH-HTSGGGGGEETTEE-HHHHHHHHHHH---TT-S--HHHH----HHHH
T ss_pred eccCHHHHHHHHHHHHHHH---HHHHHHHHHHhcCCcccccCCCCCcCHHHHHHHHHHH---HcCCCCHHHH----HHHH
Confidence 5688888887654433311 23555555553332 4689999999998776 4556776554 4445
Q ss_pred HHhCC
Q 027239 173 EEADT 177 (226)
Q Consensus 173 ~~~d~ 177 (226)
..+-.
T Consensus 76 ~sF~~ 80 (138)
T PF14513_consen 76 LSFQK 80 (138)
T ss_dssp HHS--
T ss_pred HHHhC
Confidence 66543
No 162
>PRK10236 hypothetical protein; Provisional
Probab=50.31 E-value=1.3e+02 Score=24.17 Aligned_cols=115 Identities=10% Similarity=0.079 Sum_probs=64.1
Q ss_pred cCCCHHHHHHHHHHHHhhcccCCCCCCccH------HHHHHHHhccCCcchHHH---HHHHHHHcCCCCCCccHHHHHHH
Q 027239 40 TVFSVSEIEALYELFKKISSAVIDDGLINK------EEFQLALFKTNKKESLFA---DRVFDLFDTKHNGILDFEEFARA 110 (226)
Q Consensus 40 ~~~s~~~i~~l~~~F~~~D~~~~~~G~i~~------~ef~~~l~~~~~~~~~~~---~~lf~~~d~~~~g~i~~~eF~~~ 110 (226)
...|.++++.|.+.--. | ++|+... ++..............++ ..-|+.|..|+ |...
T Consensus 15 ~~cs~edL~~Lv~~Lt~-d----~dG~~R~te~lt~~~~yk~~~~~~~~~~~yw~~Ia~elq~fGgnt--------~~n~ 81 (237)
T PRK10236 15 QHCSEEQLANFARLLTH-N----EKGKTRLSSVLMRNELFKSMEGHPEQHRRNWQLIAGELQHFGGDS--------IANK 81 (237)
T ss_pred HhCCHHHHHHHHHHHhc-C----CCCCEeehhhhcccHHHHhhcccchhHHHHHHHHHHHHHHhcchH--------HHHH
Confidence 34567777776665533 3 4565433 222222222222222333 33345554332 4555
Q ss_pred HHhhCCCCCcHHHHHHHHHHhcCCCCCceeHHHHHH-HHHHHHhhcCCCCCHHHHHHHHH
Q 027239 111 LSIFHPNSPIDDKIEFSFQLYDLKQQGFIERQEVKQ-MVVATLTESGMNLSDDVIESIID 169 (226)
Q Consensus 111 ~~~~~~~~~~~~~~~~~F~~~D~d~~G~I~~~e~~~-~l~~~~~~~~~~~~~~~~~~~~~ 169 (226)
+.. .....++-+..+++.+..+.+...+..++.. ++.++++..=..+++++..++..
T Consensus 82 lRG--~Gv~YreIL~DVc~~LKV~y~~~~st~~iE~~il~kll~~a~~kms~eE~~~L~~ 139 (237)
T PRK10236 82 LRG--HGKLYRAILLDVSKRLKLKADKEMSTFEIEQQLLEQFLRNTWKKMDEEHKQEFLH 139 (237)
T ss_pred Hhc--CCccHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
Confidence 542 2246777788888888888777777777765 44455555556788888777774
No 163
>PF00404 Dockerin_1: Dockerin type I repeat; InterPro: IPR018242 Gram-positive, thermophilic anaerobes such as Clostridium thermocellum or Clostridium cellulolyticum secretes a highly active and thermostable cellulase complex (cellulosome) responsible for the degradation of crystalline cellulose [, ]. The cellulosome contains at least 30 polypeptides, the majority of the enzymes are endoglucanases (3.2.1.4 from EC), but there are also some xylanases (3.2.1.8 from EC), beta-glucosidases (3.2.1.21 from EC) and endo-beta-1,3-1,4-glucanases (3.2.1.73 from EC). Complete sequence data for many of these enzymes has been obtained. A majority of these proteins contain a highly conserved type I dockerin domain of about 65 to 70 residues, which is generally (but not always) located in the C terminus. The dockerin domain is the binding partner of the cohesin domain (see IPR002102 from INTERPRO). The cohesin-dockerin interaction is the crucial interaction for complex formation in the cellulosome []. The dockerin domain contains a tandem repeat of two calcium-binding loop-helix motifs (distinct from EF-hand Ca-binding motifs). These motifs are about 24 amino acids in length. This entry represents these repeated Ca-binding motifs.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3P0D_J 1OHZ_B 2CCL_B 1DAV_A 1DAQ_A 2VN5_B 2VN6_B.
Probab=48.76 E-value=22 Score=16.97 Aligned_cols=16 Identities=13% Similarity=0.362 Sum_probs=9.5
Q ss_pred cCCCCCceeHHHHHHH
Q 027239 132 DLKQQGFIERQEVKQM 147 (226)
Q Consensus 132 D~d~~G~I~~~e~~~~ 147 (226)
|.+++|.|+.-++.-+
T Consensus 1 DvN~DG~vna~D~~~l 16 (21)
T PF00404_consen 1 DVNGDGKVNAIDLALL 16 (21)
T ss_dssp -TTSSSSSSHHHHHHH
T ss_pred CCCCCCcCCHHHHHHH
Confidence 4566777776666543
No 164
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=47.65 E-value=85 Score=21.17 Aligned_cols=62 Identities=16% Similarity=0.163 Sum_probs=35.6
Q ss_pred HHHHHHHHhhcccCCCCCCccHHHHHHHHhc-------cC-----CcchHHHHHHHHHHcCCCCCCccHHHHHHHHHhh
Q 027239 48 EALYELFKKISSAVIDDGLINKEEFQLALFK-------TN-----KKESLFADRVFDLFDTKHNGILDFEEFARALSIF 114 (226)
Q Consensus 48 ~~l~~~F~~~D~~~~~~G~i~~~ef~~~l~~-------~~-----~~~~~~~~~lf~~~d~~~~g~i~~~eF~~~~~~~ 114 (226)
..++..|..... ++|.++...|...|.. .+ ...++.++.-|+.. ..+..|+-++|+..+..-
T Consensus 3 dKyRylFslisd---~~g~~~~~~l~~lL~d~lqip~~vgE~~aFg~~e~sv~sCF~~~--~~~~~I~~~~Fl~wl~~e 76 (90)
T PF09069_consen 3 DKYRYLFSLISD---SNGCMDQRKLGLLLHDVLQIPRAVGEGPAFGYIEPSVRSCFQQV--QLSPKITENQFLDWLMSE 76 (90)
T ss_dssp HHHHHHHHHHS----TTS-B-HHHHHHHHHHHHHHHHHTT-GGGGT--HHHHHHHHHHT--TT-S-B-HHHHHHHHHT-
T ss_pred HHHHHHHHHHcC---CCCCCcHHHHHHHHHHHHHHHHHhCccccccCcHHHHHHHhccc--CCCCccCHHHHHHHHHhC
Confidence 456777888754 6999999999887633 11 11234456666664 234569999999888643
No 165
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=46.16 E-value=69 Score=22.33 Aligned_cols=72 Identities=21% Similarity=0.281 Sum_probs=38.9
Q ss_pred CceeHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhChhhhhhhhcccccccccccc
Q 027239 137 GFIERQEVKQMVVATLTESGMNLSDDVIESIIDKTFEEADTKHDGKIDKEEWRNLVLRHPSLLKNMTLQYLKDITTTFP 215 (226)
Q Consensus 137 G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~dG~Is~~eF~~~~~~~~~l~~~~~~~~~~~~~~~~~ 215 (226)
..++.+++..++..+ +.+ -+.+-.--...++....+. ..++-+|++.+|..+|.+++-=-+-..+.+..+|+
T Consensus 35 ~~~~~~el~~~~~~~----~~~--~~~l~n~~~~~~k~l~~~~-~~ls~~e~i~~l~~~p~LikRPii~~~~~~~vG~~ 106 (115)
T cd03032 35 QPLTKEELKEILSLT----ENG--VEDIISTRSKAFKNLNIDI-DELSLSELIRLISEHPSLLRRPIIIDEKRLQIGYN 106 (115)
T ss_pred CcchHHHHHHHHHHh----cCC--HHHHHhcCcHHHHHcCCCc-ccCCHHHHHHHHHhChhheeCCEEEeCCEEEeCCC
Confidence 356777777775443 322 1111111112334443333 45899999999999998877211223345666664
No 166
>PF13608 Potyvirid-P3: Protein P3 of Potyviral polyprotein
Probab=45.48 E-value=21 Score=31.68 Aligned_cols=66 Identities=17% Similarity=0.239 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHhhcccCCCCCCccHHHHHHHHhccCCcchHHHHHHHHH----HcCCCCCCccHHHHHHHHHh
Q 027239 45 SEIEALYELFKKISSAVIDDGLINKEEFQLALFKTNKKESLFADRVFDL----FDTKHNGILDFEEFARALSI 113 (226)
Q Consensus 45 ~~i~~l~~~F~~~D~~~~~~G~i~~~ef~~~l~~~~~~~~~~~~~lf~~----~d~~~~g~i~~~eF~~~~~~ 113 (226)
++...+...| .+... .++.-+.+||.+.+.......-+.++.++.. +.....+...+|.-+++++.
T Consensus 286 ~~~~~i~~ly-~~~~~--~~~~pt~eEF~e~v~~~~p~L~~~~~~~~~~~~V~hQaK~~~e~~lEkIiAf~aL 355 (445)
T PF13608_consen 286 KEEDEIEHLY-MLCKK--HGKLPTEEEFLEYVEEVNPELLEFAEEMIEEEEVEHQAKTASEKNLEKIIAFVAL 355 (445)
T ss_pred HHHHHHHHHH-HHHHH--hCCCCCHHHHHHHHHhcCchHHHHHHHHhCCCcEEecCCChHHHHHHHHHHHHHH
Confidence 3455566666 55555 7888999999999875543333333333311 11222345777776666654
No 167
>KOG4004 consensus Matricellular protein Osteonectin/SPARC/BM-40 [Extracellular structures]
Probab=45.37 E-value=15 Score=28.60 Aligned_cols=57 Identities=19% Similarity=0.336 Sum_probs=41.9
Q ss_pred HHHHhcC-CCCCceeHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHH
Q 027239 127 SFQLYDL-KQQGFIERQEVKQMVVATLTESGMNLSDDVIESIIDKTFEEADTKHDGKIDKEEWRNLVL 193 (226)
Q Consensus 127 ~F~~~D~-d~~G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~dG~Is~~eF~~~~~ 193 (226)
-|-.+|. -.+|+++-.|+.-+- .+-++-+ .-+..+|+-.|.|.||.|+.+||-..+.
T Consensus 192 qf~qld~~p~d~~~sh~el~pl~-------ap~ipme---~c~~~f~e~cd~~nd~~ial~ew~~c~g 249 (259)
T KOG4004|consen 192 QFGQLDQHPIDGYLSHTELAPLR-------APLIPME---HCTTRFFETCDLDNDKYIALDEWAGCFG 249 (259)
T ss_pred eeccccCCCcccccccccccccc-------CCcccHH---hhchhhhhcccCCCCCceeHHHhhcccC
Confidence 3555665 458999999987751 3334433 3467788999999999999999987654
No 168
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=44.80 E-value=51 Score=22.45 Aligned_cols=55 Identities=20% Similarity=0.451 Sum_probs=34.2
Q ss_pred CceeHHHHHHHHHHHHhhcCCCCCHHHHHHHHH---HHHHHhCCCCCCcccHHHHHHHHHhChhhhh
Q 027239 137 GFIERQEVKQMVVATLTESGMNLSDDVIESIID---KTFEEADTKHDGKIDKEEWRNLVLRHPSLLK 200 (226)
Q Consensus 137 G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~---~~f~~~d~~~dG~Is~~eF~~~~~~~~~l~~ 200 (226)
...+.+++..++... +.. ++++++ ..|...+......++-+|+.++|..+|.+++
T Consensus 34 ~~~~~~~l~~~~~~~----~~~-----~~~li~~~~~~~~~l~~~~~~~ls~~e~~~~l~~~p~Lik 91 (105)
T cd02977 34 EPPTKEELKELLAKL----GLG-----VEDLFNTRGTPYRKLGLADKDELSDEEALELMAEHPKLIK 91 (105)
T ss_pred CCCCHHHHHHHHHhc----CCC-----HHHHHhcCCchHHHcCCccccCCCHHHHHHHHHhCcCeee
Confidence 456677777775433 321 222332 2334444443457899999999999998876
No 169
>KOG3442 consensus Uncharacterized conserved protein [Function unknown]
Probab=43.59 E-value=70 Score=22.95 Aligned_cols=42 Identities=29% Similarity=0.367 Sum_probs=34.6
Q ss_pred CCceeHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhCCCCCCc
Q 027239 136 QGFIERQEVKQMVVATLTESGMNLSDDVIESIIDKTFEEADTKHDGK 182 (226)
Q Consensus 136 ~G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~dG~ 182 (226)
.|.||++|-.++|. ...+++.++++.-...+|+.-|..+-|.
T Consensus 53 ~~~iTlqEa~qILn-----V~~~ln~eei~k~yehLFevNdkskGGS 94 (132)
T KOG3442|consen 53 NGKITLQEAQQILN-----VKEPLNREEIEKRYEHLFEVNDKSKGGS 94 (132)
T ss_pred cccccHHHHhhHhC-----CCCCCCHHHHHHHHHHHHhccCcccCcc
Confidence 46799999999852 2357899999999999999999887774
No 170
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=43.33 E-value=58 Score=22.77 Aligned_cols=70 Identities=16% Similarity=0.268 Sum_probs=39.3
Q ss_pred CceeHHHHHHHHHHHHhhcCCCCCHHHHHHHHH---HHHHHhCCCCCCcccHHHHHHHHHhChhhhhhhhcccccccccc
Q 027239 137 GFIERQEVKQMVVATLTESGMNLSDDVIESIID---KTFEEADTKHDGKIDKEEWRNLVLRHPSLLKNMTLQYLKDITTT 213 (226)
Q Consensus 137 G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~---~~f~~~d~~~dG~Is~~eF~~~~~~~~~l~~~~~~~~~~~~~~~ 213 (226)
..+|.+|+..++..+ |... ..++++ ..|+..+.+ ...++-+++..+|..+|.+++-=-+...+.+..+
T Consensus 34 ~p~t~~el~~~l~~~----g~~~----~~~lin~~~~~~~~l~~~-~~~ls~~e~i~~l~~~P~LikRPIi~~~~~~~vG 104 (114)
T TIGR00014 34 NPPTKSELEAIFAKL----GLTV----AREMIRTKEALYKELGLS-DPNLSDQELLDAMVAHPILLERPIVVAGDGARIG 104 (114)
T ss_pred CCcCHHHHHHHHHHc----CCch----HHHHHhcCCcHHHHcCCC-ccCCCHHHHHHHHHHCcCcccCCeEEECCEEEEc
Confidence 357788888875443 4221 011221 223343322 2368889999999999988872222234445566
Q ss_pred cc
Q 027239 214 FP 215 (226)
Q Consensus 214 ~~ 215 (226)
||
T Consensus 105 ~~ 106 (114)
T TIGR00014 105 RP 106 (114)
T ss_pred CC
Confidence 64
No 171
>KOG3449 consensus 60S acidic ribosomal protein P2 [Translation, ribosomal structure and biogenesis]
Probab=42.80 E-value=1e+02 Score=21.63 Aligned_cols=41 Identities=15% Similarity=0.280 Sum_probs=33.9
Q ss_pred HHHHHHHhcCCCCCceeHHHHHHHHHHHHhhcCCCCCHHHHHHHH
Q 027239 124 IEFSFQLYDLKQQGFIERQEVKQMVVATLTESGMNLSDDVIESII 168 (226)
Q Consensus 124 ~~~~F~~~D~d~~G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~ 168 (226)
+..+|-+++..|+...+..+++.++..+ |..+..+.++.++
T Consensus 3 yvaAYLL~~lgGn~~psa~DikkIl~sV----G~E~d~e~i~~vi 43 (112)
T KOG3449|consen 3 YVAAYLLAVLGGNASPSASDIKKILESV----GAEIDDERINLVL 43 (112)
T ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHh----CcccCHHHHHHHH
Confidence 4567888888888899999999996555 9999998887777
No 172
>PLN02222 phosphoinositide phospholipase C 2
Probab=42.26 E-value=98 Score=28.56 Aligned_cols=64 Identities=19% Similarity=0.299 Sum_probs=41.0
Q ss_pred CHHHHHHHHHHHHhhcccCCCCCCccHHHHHHHHhccCCc---chHHHHHHHHHHcC-CCCCCccHHHHHHHHHh
Q 027239 43 SVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTNKK---ESLFADRVFDLFDT-KHNGILDFEEFARALSI 113 (226)
Q Consensus 43 s~~~i~~l~~~F~~~D~~~~~~G~i~~~ef~~~l~~~~~~---~~~~~~~lf~~~d~-~~~g~i~~~eF~~~~~~ 113 (226)
.+.++..++.. +. +++.|+.++|...|...... ....+..+++.+.. ...+.++++.|..++..
T Consensus 23 ~~~ei~~if~~---~~----~~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~ii~~~~~~~~~~~~~~~gF~~yL~s 90 (581)
T PLN02222 23 APREIKTIFEK---YS----ENGVMTVDHLHRFLIDVQKQDKATREDAQSIINSASSLLHRNGLHLDAFFKYLFG 90 (581)
T ss_pred CcHHHHHHHHH---hc----CCCCcCHHHHHHHHHHhcCCccCCHHHHHHHHHhhhhhhhccCcCHHHHHHHhcC
Confidence 44555555544 43 24689999999988653322 23445667776532 23556999999998864
No 173
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=42.02 E-value=2.7e+02 Score=27.12 Aligned_cols=149 Identities=15% Similarity=0.203 Sum_probs=79.4
Q ss_pred cCCCHHHHHH-HHHHHHhhcccCCCCCCccHHHHHHHHhccCCcc--hHHHHHHHHHHcCCCCCCccHHHHHHHHHhhCC
Q 027239 40 TVFSVSEIEA-LYELFKKISSAVIDDGLINKEEFQLALFKTNKKE--SLFADRVFDLFDTKHNGILDFEEFARALSIFHP 116 (226)
Q Consensus 40 ~~~s~~~i~~-l~~~F~~~D~~~~~~G~i~~~ef~~~l~~~~~~~--~~~~~~lf~~~d~~~~g~i~~~eF~~~~~~~~~ 116 (226)
..+++.+|.+ ++..+...|.. .-..|+..+++..|-...... ..+...-|.. |.-.++.++|++|-.+...+..
T Consensus 135 ~a~~p~qI~~wlrk~~ysvd~~--~~~~isard~k~~l~qvn~k~~~~kfl~e~~te-d~~~k~dlsf~~f~~ly~~lmf 211 (1267)
T KOG1264|consen 135 NAPTPLQIERWLRKQIYSVDQT--RENSISARDLKTILPQVNFKVSSAKFLKEKFTE-DGARKDDLSFEQFHLLYKKLMF 211 (1267)
T ss_pred cCCChHHHHHHHHhhheeccch--hhhheeHHhhhcccccceEEechHHHHHHHHhH-hhhccccccHHHHHHHHHHHhh
Confidence 3556666655 57788888866 667799999988774433222 2222222333 2334667999999988776543
Q ss_pred CCCcHHHH--HHHHHH--hcCCCCCceeHHHHHHHHHHHHhhcCCCCC-H-HHHHHHHHHHHHHhCCC-CCCcccHHHHH
Q 027239 117 NSPIDDKI--EFSFQL--YDLKQQGFIERQEVKQMVVATLTESGMNLS-D-DVIESIIDKTFEEADTK-HDGKIDKEEWR 189 (226)
Q Consensus 117 ~~~~~~~~--~~~F~~--~D~d~~G~I~~~e~~~~l~~~~~~~~~~~~-~-~~~~~~~~~~f~~~d~~-~dG~Is~~eF~ 189 (226)
.......+ ...|-. =+....-.++..+|.+++..- -+.... + ..+++++..+.+..-.+ ....+.+.||+
T Consensus 212 s~~~a~l~e~~~~~~~~~~~~~d~~vV~~~ef~rFL~~~---Q~e~~Asdr~av~~~~r~F~~D~~re~~EPyl~v~EFv 288 (1267)
T KOG1264|consen 212 SQQKAILLEFKKDFILGNTDRPDASVVYLQEFQRFLIHE---QQEHWASDRNAVREFMRKFIDDTMRETAEPYLFVDEFV 288 (1267)
T ss_pred ccchhhhhcccchhhhcCCCCccceEeeHHHHHHHHHhh---hHHHhhhHHHHHHHHHHHHHhhhhhhccCcceeHHHHH
Confidence 21111101 111111 122223579999999986332 111111 1 12333332222221111 24579999999
Q ss_pred HHHHh
Q 027239 190 NLVLR 194 (226)
Q Consensus 190 ~~~~~ 194 (226)
.++-.
T Consensus 289 ~fLFS 293 (1267)
T KOG1264|consen 289 TFLFS 293 (1267)
T ss_pred HHHhh
Confidence 99854
No 174
>PF13720 Acetyltransf_11: Udp N-acetylglucosamine O-acyltransferase; Domain 2; PDB: 3I3A_A 3I3X_A 3HSQ_B 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 4EQY_F ....
Probab=41.84 E-value=1e+02 Score=20.32 Aligned_cols=52 Identities=25% Similarity=0.287 Sum_probs=32.7
Q ss_pred hhcCCCHHHHHHHHHHHHhhcccCCCCCCccHHHHHHHHhccCCcchHHHHHHHHHHc
Q 027239 38 RETVFSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTNKKESLFADRVFDLFD 95 (226)
Q Consensus 38 ~~~~~s~~~i~~l~~~F~~~D~~~~~~G~i~~~ef~~~l~~~~~~~~~~~~~lf~~~d 95 (226)
....||.+++..++..|..+=.. + .+.++-..-+.... ..++.+..+.+-+.
T Consensus 24 rR~Gfs~~~i~~l~~ayr~l~~~----~-~~~~~a~~~l~~~~-~~~~~v~~~~~Fi~ 75 (83)
T PF13720_consen 24 RRRGFSKEEISALRRAYRILFRS----G-LTLEEALEELEEEY-PDSPEVREIVDFIR 75 (83)
T ss_dssp HHTTS-HHHHHHHHHHHHHHHTS----S-S-HHHHHHHHHHHT-TSCHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHHHhC----C-CCHHHHHHHHHHhc-cCCHHHHHHHHHHH
Confidence 46789999999999999999642 3 56666555554422 22445566655554
No 175
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=40.45 E-value=92 Score=22.06 Aligned_cols=72 Identities=21% Similarity=0.307 Sum_probs=42.5
Q ss_pred ceeHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhChhhhhhhhccccccccccccc
Q 027239 138 FIERQEVKQMVVATLTESGMNLSDDVIESIIDKTFEEADTKHDGKIDKEEWRNLVLRHPSLLKNMTLQYLKDITTTFPS 216 (226)
Q Consensus 138 ~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~dG~Is~~eF~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 216 (226)
.++.+++..++..+ |... +++-.--...|+..+ -....++-++....+..+|.+++-=-+-..+++..+||+
T Consensus 37 ~~s~~eL~~~l~~~----g~~~--~~li~t~~~~~r~L~-~~~~~~~~~~~~~~i~~~~~LikRPivv~~~~~~iG~~~ 108 (117)
T COG1393 37 PPSREELKKILSKL----GDGV--EELINTRGTTYRELN-LDKEDLSDEELIEALLENPSLIKRPIVVDNKKLRVGFNE 108 (117)
T ss_pred CCCHHHHHHHHHHc----CccH--HHHHHhccchHHHcC-CcccccChHHHHHHHHhChhhccCCeEEeCCceEecCCH
Confidence 58888998886544 4331 111111223556666 223468888889999998877762222333347777753
No 176
>PF05099 TerB: Tellurite resistance protein TerB; InterPro: IPR007791 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Direct interaction between DnaK and djlA is needed for the induction of the wcaABCDE operon which is involved in the synthesis of a colanic acid polysaccharide capsule. The colanic acid capsule may help the bacterium survive conditions outside the host [, ]; PDB: 2H5N_D 2JXU_A.
Probab=40.40 E-value=27 Score=25.05 Aligned_cols=91 Identities=22% Similarity=0.245 Sum_probs=47.1
Q ss_pred HHHHHHHHhhcccCCCCCCccHHHHHHHHhc----cCCcchHHHHHHHHHHcCCCCCCccHHHHHHHHHhhCCCCCcHHH
Q 027239 48 EALYELFKKISSAVIDDGLINKEEFQLALFK----TNKKESLFADRVFDLFDTKHNGILDFEEFARALSIFHPNSPIDDK 123 (226)
Q Consensus 48 ~~l~~~F~~~D~~~~~~G~i~~~ef~~~l~~----~~~~~~~~~~~lf~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~ 123 (226)
..+..+...... -||.++.+|...+... .+.. ......+...++.-.....++.+++..+...........-
T Consensus 24 ~a~~~ll~~~a~---aDG~v~~~E~~~i~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~r~~l 99 (140)
T PF05099_consen 24 EALLALLAAVAK---ADGEVDPEEIEAIRQLLAERFGLS-PEEAEELIELADELKQEPIDLEELLRELRDSLSPEEREDL 99 (140)
T ss_dssp HHHHHHHHHHHH---TTSS--CHHHHHHHHHHHHCGCGS-CHHHHHHHHHHCHHHHHCCHHHHHHHHHCTS--HHHHHHH
T ss_pred HHHHHHHHHHHH---cCCCCCHHHHHHHHHHHHHhhCCC-HHHHHHHHHHHHHHHhccccHHHHHHHHHHhhchHHHHHH
Confidence 334444444444 4899999997754322 2222 2224555555544444467788888776543221223344
Q ss_pred HHHHHHHhcCCCCCceeHHHH
Q 027239 124 IEFSFQLYDLKQQGFIERQEV 144 (226)
Q Consensus 124 ~~~~F~~~D~d~~G~I~~~e~ 144 (226)
+..++.+.-.| |.++..|-
T Consensus 100 l~~l~~ia~AD--G~~~~~E~ 118 (140)
T PF05099_consen 100 LRMLIAIAYAD--GEISPEEQ 118 (140)
T ss_dssp HHHHHHHCTCT--TC-SCCHH
T ss_pred HHHHHHHHhcC--CCCCHHHH
Confidence 66677777776 45655554
No 177
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=40.36 E-value=48 Score=22.88 Aligned_cols=52 Identities=23% Similarity=0.466 Sum_probs=31.6
Q ss_pred ceeHHHHHHHHHHHHhhcCCCCCHHHHHHHHH---HHHHHhCCCCCCcccHHHHHHHHHhChhhhh
Q 027239 138 FIERQEVKQMVVATLTESGMNLSDDVIESIID---KTFEEADTKHDGKIDKEEWRNLVLRHPSLLK 200 (226)
Q Consensus 138 ~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~---~~f~~~d~~~dG~Is~~eF~~~~~~~~~l~~ 200 (226)
.++.+|+..++... | ++++++ ..|+..+.+....++-+++..+|..+|.+++
T Consensus 35 p~s~~eL~~~l~~~----g-------~~~li~~~~~~yk~l~l~~~~~~s~~e~~~~l~~~p~Lik 89 (105)
T cd03035 35 GLDAATLERWLAKV----G-------WETLLNKRGTTWRKLDDAQKAALDAAKAIALMLEHPSLIK 89 (105)
T ss_pred CCCHHHHHHHHHHh----C-------hHHHHccCchHHHhCChhhhccCCHHHHHHHHHhCcCeee
Confidence 56777777775432 3 112221 2334443332245889999999999998887
No 178
>PRK12559 transcriptional regulator Spx; Provisional
Probab=40.30 E-value=73 Score=22.99 Aligned_cols=73 Identities=21% Similarity=0.309 Sum_probs=42.3
Q ss_pred CceeHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhChhhhhhhhccccccccccccc
Q 027239 137 GFIERQEVKQMVVATLTESGMNLSDDVIESIIDKTFEEADTKHDGKIDKEEWRNLVLRHPSLLKNMTLQYLKDITTTFPS 216 (226)
Q Consensus 137 G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~dG~Is~~eF~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 216 (226)
..++.+|+..++..+ +.+ .+++-.--...|+..+.+. ..++-++.+.+|..+|.+++==-+...+.+..+||+
T Consensus 35 ~~~s~~el~~~l~~~----~~g--~~~lin~~~~~~k~l~~~~-~~ls~~e~i~ll~~~P~LikRPIi~~~~~~~iGf~~ 107 (131)
T PRK12559 35 NSMTVDELKSILRLT----EEG--ATEIISTRSKTFQDLNINI-EELSLNEFYKLIIEHPLMLRRPIMLDEKRLQIGFND 107 (131)
T ss_pred CcCCHHHHHHHHHHc----CCC--HHHHHhcCcHHHHhCCCCc-ccCCHHHHHHHHHhCcceEeCCEEEeCCEEEEcCCH
Confidence 357888888875442 222 1111111122334544333 358899999999999988872123345567777753
No 179
>PF11569 Homez: Homeodomain leucine-zipper encoding, Homez; PDB: 2YS9_A.
Probab=39.44 E-value=37 Score=20.72 Aligned_cols=26 Identities=15% Similarity=0.220 Sum_probs=18.9
Q ss_pred CCCCCHHHHHhhcCCCHHHHHHHHHH
Q 027239 28 RGLEDPEALARETVFSVSEIEALYEL 53 (226)
Q Consensus 28 ~~~~~~~~~~~~~~~s~~~i~~l~~~ 53 (226)
..+.++..+-..+.+|.++++.++..
T Consensus 23 L~E~DL~~L~~kS~ms~qqVr~WFa~ 48 (56)
T PF11569_consen 23 LQEEDLDELCDKSRMSYQQVRDWFAE 48 (56)
T ss_dssp --TTHHHHHHHHTT--HHHHHHHHHH
T ss_pred ccHhhHHHHHHHHCCCHHHHHHHHHH
Confidence 45688999999999999999888653
No 180
>PTZ00373 60S Acidic ribosomal protein P2; Provisional
Probab=39.01 E-value=1.2e+02 Score=21.44 Aligned_cols=41 Identities=20% Similarity=0.327 Sum_probs=31.6
Q ss_pred HHHHHHHhcCCCCCceeHHHHHHHHHHHHhhcCCCCCHHHHHHHH
Q 027239 124 IEFSFQLYDLKQQGFIERQEVKQMVVATLTESGMNLSDDVIESII 168 (226)
Q Consensus 124 ~~~~F~~~D~d~~G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~ 168 (226)
+..+|-+.-..|+..+|.+++..+++.. |..+.+..+..++
T Consensus 5 yvaAYlL~~lgG~~~pTaddI~kIL~Aa----GveVd~~~~~l~~ 45 (112)
T PTZ00373 5 YVAAYLMCVLGGNENPTKKEVKNVLSAV----NADVEDDVLDNFF 45 (112)
T ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHc----CCCccHHHHHHHH
Confidence 4556667777777789999999996665 8888887776666
No 181
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=38.96 E-value=17 Score=25.14 Aligned_cols=72 Identities=22% Similarity=0.345 Sum_probs=37.5
Q ss_pred ceeHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhChhhhhhhhcccccccccccc
Q 027239 138 FIERQEVKQMVVATLTESGMNLSDDVIESIIDKTFEEADTKHDGKIDKEEWRNLVLRHPSLLKNMTLQYLKDITTTFP 215 (226)
Q Consensus 138 ~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~dG~Is~~eF~~~~~~~~~l~~~~~~~~~~~~~~~~~ 215 (226)
.++.+|+..++..+ |..+.+ +-.--...|...+......++-++++.+|..+|.+++-=-+-..+.+..+|+
T Consensus 32 p~s~~el~~~l~~~----~~~~~~--lin~~~~~~k~l~~~~~~~~s~~e~i~~l~~~p~LikRPIi~~~~~~~iG~~ 103 (110)
T PF03960_consen 32 PLSREELRELLSKL----GNGPDD--LINTRSKTYKELGKLKKDDLSDEELIELLLENPKLIKRPIIVDGKKAVIGFN 103 (110)
T ss_dssp ---HHHHHHHHHHH----TSSGGG--GB-TTSHHHHHTTHHHCTTSBHHHHHHHHHHSGGGB-SSEEEETTEEEESSS
T ss_pred CCCHHHHHHHHHHh----cccHHH--HhcCccchHhhhhhhhhhhhhhHHHHHHHHhChhheeCCEEEECCEEEEeCC
Confidence 58888888886655 422110 0000001123333122357999999999999999887222233355666664
No 182
>TIGR02675 tape_meas_nterm tape measure domain. Proteins containing this domain are strictly bacterial, including bacteriophage and prophage regions of bacterial genomes. Most members are 800 to 1800 amino acids long, making them among the longest predicted proteins of their respective phage genomes, where they are encoded in tail protein regions. This roughly 80-residue domain described here usually begins between residue 100 and 250. Many members are known or predicted to act as phage tail tape measure proteins, a minor tail component that regulates tail length.
Probab=38.87 E-value=75 Score=20.44 Aligned_cols=37 Identities=16% Similarity=0.131 Sum_probs=30.3
Q ss_pred hhcCCCHHHHHHHHHHHHhhcccCCCCCCccHHHHHHHHhc
Q 027239 38 RETVFSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFK 78 (226)
Q Consensus 38 ~~~~~s~~~i~~l~~~F~~~D~~~~~~G~i~~~ef~~~l~~ 78 (226)
.....|.+++......|...- .+|++.-+||..++..
T Consensus 6 ~~~G~s~e~~~~~~~ql~Q~~----~~Gkv~~ee~n~~~e~ 42 (75)
T TIGR02675 6 AASGASAEEADGALIQLSQML----ASGKLRGEEINSLLEA 42 (75)
T ss_pred HHhCCCHHHHHHHHHHHHHHH----HcCcccHHHHHHHHHH
Confidence 455678888888888888876 7899999999988754
No 183
>PF03705 CheR_N: CheR methyltransferase, all-alpha domain; InterPro: IPR022641 CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the N-terminal domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF01739 from PFAM. Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region [].; PDB: 1AF7_A 1BC5_A.
Probab=38.02 E-value=56 Score=19.34 Aligned_cols=51 Identities=18% Similarity=0.331 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHhhcCCCCCHH---HHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhChh
Q 027239 142 QEVKQMVVATLTESGMNLSDD---VIESIIDKTFEEADTKHDGKIDKEEWRNLVLRHPS 197 (226)
Q Consensus 142 ~e~~~~l~~~~~~~~~~~~~~---~~~~~~~~~f~~~d~~~dG~Is~~eF~~~~~~~~~ 197 (226)
.+|..+..-+....|..++.. .++.-+....... |.=+|.+|...+..+|+
T Consensus 3 ~~f~~~~~~i~~~~Gi~l~~~K~~~l~rRl~~rm~~~-----~~~~~~~y~~~L~~d~~ 56 (57)
T PF03705_consen 3 AEFERFRELIYRRTGIDLSEYKRSLLERRLARRMRAL-----GLPSFAEYYELLRSDPD 56 (57)
T ss_dssp HHHHHHHHHHHHHH-----GGGHHHHHHHHHHHHHHH-----T---HHHHHHHHHH-T-
T ss_pred HHHHHHHHHHHHHHCCCCchhhHHHHHHHHHHHHHHc-----CCCCHHHHHHHHHhCCC
Confidence 445555555556677777654 3333333333333 56789999999888763
No 184
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=36.06 E-value=1e+02 Score=22.16 Aligned_cols=43 Identities=14% Similarity=0.296 Sum_probs=27.4
Q ss_pred HHHhCCCCCCcccHHHHHHHHHhChhhhhhhhcccccccccccc
Q 027239 172 FEEADTKHDGKIDKEEWRNLVLRHPSLLKNMTLQYLKDITTTFP 215 (226)
Q Consensus 172 f~~~d~~~dG~Is~~eF~~~~~~~~~l~~~~~~~~~~~~~~~~~ 215 (226)
|+..+.+. ..++-+|++.+|..+|.+++-=-+...+.+..+||
T Consensus 64 ~k~l~~~~-~~ls~~e~i~ll~~~p~LikRPIi~~~~~~~vG~~ 106 (131)
T PRK01655 64 FQKLNVDV-ESLSLQDLIKLISDNPGLLRRPIIIDEKRLQVGYN 106 (131)
T ss_pred HHhCCCCc-ccCCHHHHHHHHHhCcceEeCCEEEECCEEEecCC
Confidence 34443333 35889999999999998877111223445666665
No 185
>PF08349 DUF1722: Protein of unknown function (DUF1722); InterPro: IPR013560 This domain of unknown function is found in bacteria and archaea and is homologous to the hypothetical protein ybgA from Escherichia coli.
Probab=35.39 E-value=1.6e+02 Score=20.68 Aligned_cols=35 Identities=17% Similarity=0.182 Sum_probs=23.7
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHh
Q 027239 156 GMNLSDDVIESIIDKTFEEADTKHDGKIDKEEWRNLVLR 194 (226)
Q Consensus 156 ~~~~~~~~~~~~~~~~f~~~d~~~dG~Is~~eF~~~~~~ 194 (226)
...++.+|...+. +..+.-.+|.|++..-+..+..
T Consensus 63 k~~ls~~EK~~~~----~~i~~yr~g~i~l~~~l~~L~~ 97 (117)
T PF08349_consen 63 KKKLSSEEKQHFL----DLIEDYREGKIPLSVPLTLLKH 97 (117)
T ss_pred HHhCCHHHHHHHH----HHHHHHHcCCccHHHHHHHHHH
Confidence 5567777766666 5666666788888777766653
No 186
>cd05833 Ribosomal_P2 Ribosomal protein P2. This subfamily represents the eukaryotic large ribosomal protein P2. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P2 is located in the L12 stalk, with proteins P1, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers). Bacteria may have four or six copies of L7/L12 (two or three homodimers) depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2
Probab=34.33 E-value=1.5e+02 Score=20.72 Aligned_cols=41 Identities=17% Similarity=0.299 Sum_probs=31.0
Q ss_pred HHHHHHHhcCCCCCceeHHHHHHHHHHHHhhcCCCCCHHHHHHHH
Q 027239 124 IEFSFQLYDLKQQGFIERQEVKQMVVATLTESGMNLSDDVIESII 168 (226)
Q Consensus 124 ~~~~F~~~D~d~~G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~ 168 (226)
+..+|-+.-..|+..+|.+++..+++.. |..+....+..++
T Consensus 3 yvaAylL~~l~g~~~pTa~dI~~IL~Aa----GveVe~~~~~lf~ 43 (109)
T cd05833 3 YVAAYLLAVLGGNASPSAADVKKILGSV----GVEVDDEKLNKVI 43 (109)
T ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHc----CCCccHHHHHHHH
Confidence 4456667777777889999999996665 8888877766666
No 187
>cd00086 homeodomain Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
Probab=33.75 E-value=37 Score=19.99 Aligned_cols=27 Identities=19% Similarity=0.261 Sum_probs=22.2
Q ss_pred CCCCCCHHHHHhhcCCCHHHHHHHHHH
Q 027239 27 PRGLEDPEALARETVFSVSEIEALYEL 53 (226)
Q Consensus 27 ~~~~~~~~~~~~~~~~s~~~i~~l~~~ 53 (226)
.+...++..++...+++..+|..++.-
T Consensus 24 ~P~~~~~~~la~~~~l~~~qV~~WF~n 50 (59)
T cd00086 24 YPSREEREELAKELGLTERQVKIWFQN 50 (59)
T ss_pred CCCHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 445588999999999999999888654
No 188
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=33.25 E-value=83 Score=27.46 Aligned_cols=21 Identities=43% Similarity=0.778 Sum_probs=10.2
Q ss_pred HHHHHHHcCCCCCCccHHHHH
Q 027239 88 DRVFDLFDTKHNGILDFEEFA 108 (226)
Q Consensus 88 ~~lf~~~d~~~~g~i~~~eF~ 108 (226)
-+++...|.|.+|.++-+||.
T Consensus 480 gkiwklad~d~dg~ld~eefa 500 (532)
T KOG1954|consen 480 GKIWKLADIDKDGMLDDEEFA 500 (532)
T ss_pred HhhhhhhcCCcccCcCHHHHH
Confidence 444444444445555544443
No 189
>PF01325 Fe_dep_repress: Iron dependent repressor, N-terminal DNA binding domain; InterPro: IPR022687 The DtxR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 65 residues present in metalloregulators of the DtxR/MntR family. The family is named after Corynebacterium diphtheriae DtxR, an iron-specific diphtheria toxin repressor, and Bacillus subtilis MntR, a manganese transport regulator. Iron-responsive metalloregulators such as DtxR and IdeR occur in Gram-positive bacteria of the high GC branch, while manganese-responsive metalloregulators like MntR are described in diverse genera of Gram-positive and Gram-negative bacteria and also in Archaea [].The metalloregulators like DtxR/MntR contain the DNA-binding DtxR-type HTH domain usually in the N-terminal part. The C-terminal part contains a dimerisation domain with two metal-binding sites, although the primary metal-binding site is less conserved in the Mn(II)-regulators. Fe(II)-regulated proteins contain an SH3-like domain as a C-terminal extension, which is absent in Mn(II)-regulated MntR [, ]. Metal-ion dependent regulators orchestrate the virulence of several important human pathogens. The DtxR protein regulates the expression of diphtheria toxinin response to environmental iron concentrations. Furthermore, DtxR and IdeR control iron uptake []. Homeostasis of manganese, which is an essential nutrient, is regulated by MntR. A typical DtxR-type metalloregulator binds two divalent metal effectors per monomer, upon which allosteric changes occur that moderate binding to the cognate DNA operators. Iron-bound DtxR homodimers bind to an interrupted palindrome of 19 bp, protecting a sequence of ~30 bp. The crystal structures of iron-regulated and manganese-regulated repressors show that the DNA binding domain contains three alpha-helices and a pair of antiparallel beta-strands. Helices 2 and 3 comprise the helix-turn-helix motif and the beta-strands are called the wing []. This wHTH topology is similar to the lysR-type HTH (see PDOC00043 from PROSITEDOC). Most DtxR-type metalloregulators bind as dimers to the DNA major groove. Several proteins are known to contain a DtxR-type HTH domain. These include- Corynebacterium diphtheriae DtxR, a diphtheria toxin repressor [], which regulates the expression of the high-affinity iron uptake system, other iron-sensitive genes, and the bacteriophage tox gene. Metal-bound DtxR represses transcription by binding the tox operator; if iron is limiting, conformational changes of the wHTH disrupt DNA-binding and the diphtheria toxin is produced. Mycobacterium tuberculosis IdeR, an iron-dependent regulator that is essential for this pathogen. The regulator represses genes for iron acquisition and activates iron storage genes, and is a positive regulator of oxidative stress responses []. Bacillus subtilis MntR, a manganese transport regulator, binds Mn2+ as an effector and is a transcriptional repressor of transporters for the import of manganese. Treponema pallidum troR, a metal-dependent transcriptional repressor. Archaeoglobus fulgidus MDR1 (troR), a metal-dependent transcriptional repressor, which negatively regulates its own transcription. This entry covers the entire DtxR-type HTH domain.; GO: 0005506 iron ion binding; PDB: 3HRT_B 3HRS_A 3HRU_B 2X4H_D 1ON1_B 2HYF_C 2F5E_A 3R60_B 1ON2_B 2F5F_A ....
Probab=32.73 E-value=84 Score=19.21 Aligned_cols=33 Identities=15% Similarity=0.219 Sum_probs=26.3
Q ss_pred CCHHHHHHHHHHHHhhcccCCCCCCccHHHHHHHHhc
Q 027239 42 FSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFK 78 (226)
Q Consensus 42 ~s~~~i~~l~~~F~~~D~~~~~~G~i~~~ef~~~l~~ 78 (226)
+|+.....|..+|.... +.+.++..++...|.-
T Consensus 2 Lt~~~e~YL~~Iy~l~~----~~~~v~~~~iA~~L~v 34 (60)
T PF01325_consen 2 LTESEEDYLKAIYELSE----EGGPVRTKDIAERLGV 34 (60)
T ss_dssp CSCHHHHHHHHHHHHHH----CTSSBBHHHHHHHHTS
T ss_pred CCcHHHHHHHHHHHHHc----CCCCccHHHHHHHHCC
Confidence 46667788899998886 5788999999988733
No 190
>PRK10026 arsenate reductase; Provisional
Probab=32.60 E-value=91 Score=22.94 Aligned_cols=57 Identities=21% Similarity=0.359 Sum_probs=33.8
Q ss_pred CceeHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhChhhhh
Q 027239 137 GFIERQEVKQMVVATLTESGMNLSDDVIESIIDKTFEEADTKHDGKIDKEEWRNLVLRHPSLLK 200 (226)
Q Consensus 137 G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~dG~Is~~eF~~~~~~~~~l~~ 200 (226)
..+|.+|+..++..+ |. ....+-.--...|+....+.+ .++.++++.+|..+|.+++
T Consensus 37 ~ppt~~eL~~~l~~~----g~--~~~~lint~~~~yr~L~~~~~-~ls~~e~l~ll~~~P~LIK 93 (141)
T PRK10026 37 TPPTRDELVKLIADM----GI--SVRALLRKNVEPYEELGLAED-KFTDDQLIDFMLQHPILIN 93 (141)
T ss_pred CCcCHHHHHHHHHhC----CC--CHHHHHHcCCchHHHcCCCcc-CCCHHHHHHHHHhCcccee
Confidence 357788888875433 32 111111111223445443333 5899999999999998887
No 191
>PF00427 PBS_linker_poly: Phycobilisome Linker polypeptide; InterPro: IPR001297 Phycobilisomes (PBSs) are the major light-harvesting systems in cyanobacteria and red algae. PBS is a supercomplex that is composed of a core complex and multiple peripheral rod complexes. Typically, the core consists of two or five cylinders lying on the membrane with, in most cases, multiple rods radiating from the core to form a hemidiscoidal structure. The building units of the core cylinders and the peripheral rods are trimeric and hexameric discs, in which a monomer consists of a pair of related phycobiliproteins (PBPs), such as phycorerythrins, phycoerythrocyanins, phycocyanins, and allophycocyanins. The discs are connected to each other via specific linker polypeptides to form peripheral rods or core cylinders. Linker polypeptides share a conserved domain of ~180 residues, which can be present in one or multiple copies [, , , , ].; GO: 0015979 photosynthesis, 0030089 phycobilisome; PDB: 2L8V_A 2KY4_A 3OSJ_D 2L06_A 3NPH_B 2L3W_A 3PRU_C 3OHW_A.
Probab=32.36 E-value=1.7e+02 Score=21.32 Aligned_cols=21 Identities=19% Similarity=0.308 Sum_probs=16.1
Q ss_pred CCcccHHHHHHHHHhChhhhh
Q 027239 180 DGKIDKEEWRNLVLRHPSLLK 200 (226)
Q Consensus 180 dG~Is~~eF~~~~~~~~~l~~ 200 (226)
+|.|+..||++.+....-..+
T Consensus 42 ng~IsVreFVr~La~S~~yr~ 62 (131)
T PF00427_consen 42 NGQISVREFVRALAKSELYRK 62 (131)
T ss_dssp TTSS-HHHHHHHHHTSHHHHH
T ss_pred cCCCcHHHHHHHHHcCHHHHH
Confidence 689999999999987665544
No 192
>PF07879 PHB_acc_N: PHB/PHA accumulation regulator DNA-binding domain; InterPro: IPR012909 This domain is found at the N terminus of the polyhydroxyalkanoate (PHA) synthesis regulators. These regulators have been shown to directly bind DNA and PHA []. The invariant nature of this domain compared to the C-terminal IPR007897 from INTERPRO domain(s) suggests that it contains the DNA-binding function.
Probab=32.31 E-value=40 Score=21.15 Aligned_cols=22 Identities=27% Similarity=0.596 Sum_probs=18.9
Q ss_pred HHhcCCCCCceeHHHHHHHHHH
Q 027239 129 QLYDLKQQGFIERQEVKQMVVA 150 (226)
Q Consensus 129 ~~~D~d~~G~I~~~e~~~~l~~ 150 (226)
++||...+.+|+.+++.+++..
T Consensus 10 RLYDT~~s~YiTL~di~~lV~~ 31 (64)
T PF07879_consen 10 RLYDTETSSYITLEDIAQLVRE 31 (64)
T ss_pred ccccCCCceeEeHHHHHHHHHC
Confidence 4689999999999999998643
No 193
>PF09682 Holin_LLH: Phage holin protein (Holin_LLH); InterPro: IPR010026 This entry represents the Bacteriophage LL-H, Orf107, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=31.35 E-value=1.8e+02 Score=20.13 Aligned_cols=52 Identities=23% Similarity=0.314 Sum_probs=38.8
Q ss_pred HHHHHHHhcCCCCCceeHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHh
Q 027239 124 IEFSFQLYDLKQQGFIERQEVKQMVVATLTESGMNLSDDVIESIIDKTFEEA 175 (226)
Q Consensus 124 ~~~~F~~~D~d~~G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~ 175 (226)
+..+-+.+...++|.--.++-.+.+...+...|.++++++++.++......+
T Consensus 53 v~aveq~~~~~~~G~~K~~~A~~~v~~~L~~~gi~~t~~~i~~~IEaAV~~m 104 (108)
T PF09682_consen 53 VNAVEQVAKEGGKGEEKKAEAVQYVKERLKKKGIKVTDEQIEGAIEAAVKEM 104 (108)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence 3444555555557888888788887777888899999999999987665554
No 194
>COG5562 Phage envelope protein [General function prediction only]
Probab=31.34 E-value=38 Score=24.65 Aligned_cols=25 Identities=28% Similarity=0.405 Sum_probs=19.4
Q ss_pred HHHHHHcCCCCCCccHHHHHHHHHh
Q 027239 89 RVFDLFDTKHNGILDFEEFARALSI 113 (226)
Q Consensus 89 ~lf~~~d~~~~g~i~~~eF~~~~~~ 113 (226)
.+-.....+.+|..||+||+..++.
T Consensus 76 ~i~~al~~~qsGqttF~ef~~~la~ 100 (137)
T COG5562 76 LIKTALRRHQSGQTTFEEFCSALAE 100 (137)
T ss_pred HHHHHHHHHhcCCccHHHHHHHHHh
Confidence 3445566678899999999998875
No 195
>PLN02230 phosphoinositide phospholipase C 4
Probab=31.12 E-value=2e+02 Score=26.77 Aligned_cols=64 Identities=5% Similarity=-0.011 Sum_probs=32.2
Q ss_pred hHHHHHHHHHHcCCCCCCccHHHHHHHHHhhCCCC--CcHHHHHHHHHHh-------cCCCCCceeHHHHHHHH
Q 027239 84 SLFADRVFDLFDTKHNGILDFEEFARALSIFHPNS--PIDDKIEFSFQLY-------DLKQQGFIERQEVKQMV 148 (226)
Q Consensus 84 ~~~~~~lf~~~d~~~~g~i~~~eF~~~~~~~~~~~--~~~~~~~~~F~~~-------D~d~~G~I~~~e~~~~l 148 (226)
.+.+..+|..+..++ +.++.++|..++....+.. ...+.+..++..+ ..-+.+.++.+.|...|
T Consensus 28 ~~ei~~lf~~~s~~~-~~mt~~~l~~FL~~~Q~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~~yL 100 (598)
T PLN02230 28 VADVRDLFEKYADGD-AHMSPEQLQKLMAEEGGGEGETSLEEAERIVDEVLRRKHHIAKFTRRNLTLDDFNYYL 100 (598)
T ss_pred cHHHHHHHHHHhCCC-CccCHHHHHHHHHHhCCCcccCCHHHHHHHHHHHHhhccccccccccccCHHHHHHHH
Confidence 344566666664333 5666666666666544211 1233344444322 11123457777777664
No 196
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=30.89 E-value=86 Score=16.32 Aligned_cols=13 Identities=38% Similarity=0.695 Sum_probs=9.2
Q ss_pred CCCCccHHHHHHH
Q 027239 63 DDGLINKEEFQLA 75 (226)
Q Consensus 63 ~~G~i~~~ef~~~ 75 (226)
.+|.||.+||...
T Consensus 13 ~~G~IseeEy~~~ 25 (31)
T PF09851_consen 13 DKGEISEEEYEQK 25 (31)
T ss_pred HcCCCCHHHHHHH
Confidence 4677888887653
No 197
>PF05872 DUF853: Bacterial protein of unknown function (DUF853); InterPro: IPR008571 Members of this family have a P-loop containing nucleotide triphosphate hydrolases fold. This family is restricted to bacterial proteins, none of which have currently been characterised.
Probab=30.76 E-value=1.6e+02 Score=26.48 Aligned_cols=122 Identities=20% Similarity=0.223 Sum_probs=71.4
Q ss_pred CccHHHHHHHHhc----cCCcchHHHHHHHHHHcCCCCCCccHHHHHHHHHhhCCCCCcHHHHHHHHHHhcCCCCCceeH
Q 027239 66 LINKEEFQLALFK----TNKKESLFADRVFDLFDTKHNGILDFEEFARALSIFHPNSPIDDKIEFSFQLYDLKQQGFIER 141 (226)
Q Consensus 66 ~i~~~ef~~~l~~----~~~~~~~~~~~lf~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~I~~ 141 (226)
+.|..||.=.|.. +....+..+..+|+..|.++=--||..++...+..+... -+..-..| |.|+.
T Consensus 105 RaTvsemGPlLLsrlL~LNdtQ~gvL~i~F~~ADd~gLlLlDLkDLra~l~~v~e~------~~e~~~~y-----G~is~ 173 (502)
T PF05872_consen 105 RATVSEMGPLLLSRLLELNDTQEGVLNIVFRIADDEGLLLLDLKDLRAMLQYVSEN------AKELSAEY-----GNISS 173 (502)
T ss_pred EeeHHhhchHHHHHHhccchHHHHHHHHHHHHhccCCCccccHHHHHHHHHHHHhh------HHHHHHHc-----CCccH
Confidence 4677777665533 222334456788999998887789999998888766321 22222333 67888
Q ss_pred HHHHHHHHHHHhh--cC----CCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhChhhhhhhhc
Q 027239 142 QEVKQMVVATLTE--SG----MNLSDDVIESIIDKTFEEADTKHDGKIDKEEWRNLVLRHPSLLKNMTL 204 (226)
Q Consensus 142 ~e~~~~l~~~~~~--~~----~~~~~~~~~~~~~~~f~~~d~~~dG~Is~~eF~~~~~~~~~l~~~~~~ 204 (226)
.-+-.++..++.- -| ..-+.-++.+++ ..|.++.|.|+.-+--+.+. .|.+...+-+
T Consensus 174 aS~gaI~R~ll~LE~qG~d~FFGEPaldi~Dl~-----r~~~~GrG~IniL~a~~l~~-~P~LysTFLL 236 (502)
T PF05872_consen 174 ASIGAIQRALLVLEQQGGDQFFGEPALDIEDLM-----RTDADGRGVINILAADKLMN-SPKLYSTFLL 236 (502)
T ss_pred HHHHHHHHHHHHHHHcchHhhCCCccCCHHHHh-----ccCCCCCEEEEEEEhHhhhh-CcHHHHHHHH
Confidence 7777777666442 11 111222455556 66778888877544444333 3444443333
No 198
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=30.67 E-value=43 Score=34.65 Aligned_cols=70 Identities=13% Similarity=0.078 Sum_probs=50.3
Q ss_pred CCCHHHHHHHHHHHHhhcccCCCCCCccHHHHHHHHhccCC-----cchHHHHHHHHHHcCCCCCCccHHHHHHHHHh
Q 027239 41 VFSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTNK-----KESLFADRVFDLFDTKHNGILDFEEFARALSI 113 (226)
Q Consensus 41 ~~s~~~i~~l~~~F~~~D~~~~~~G~i~~~ef~~~l~~~~~-----~~~~~~~~lf~~~d~~~~g~i~~~eF~~~~~~ 113 (226)
.+++.+++..+++++.+|++ ..|+|...++...+..... .+++. +-+--..-...+|+|++.+-+.++..
T Consensus 1410 ~Ls~~d~~~F~~vW~~fDpe--atg~I~~~~~~~~lr~L~ppL~~~k~~~~-kli~mdmp~~~gd~V~f~d~L~aL~~ 1484 (1592)
T KOG2301|consen 1410 GLSEDDFEKFYEAWDEFDPE--ATQEIPYSDLSAFLRSLDPPLDLGKPNKR-KLISMDLPMVSGDRVHCLDILFALTK 1484 (1592)
T ss_pred cCCcccHHHHHHHHHhcChh--hheeeeHhhHHHHHHhcCCccccCCCCCc-eeeeeecCcCCCCeeehhhHHHHHHH
Confidence 68999999999999999999 9999999999887755321 11221 11222223346778999998887754
No 199
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=30.05 E-value=1.7e+02 Score=22.91 Aligned_cols=43 Identities=14% Similarity=0.067 Sum_probs=19.8
Q ss_pred CCCccHHHHHHHHhccCCcchHHHHHHHHHHcCCCCCCccHHHHHHHH
Q 027239 64 DGLINKEEFQLALFKTNKKESLFADRVFDLFDTKHNGILDFEEFARAL 111 (226)
Q Consensus 64 ~G~i~~~ef~~~l~~~~~~~~~~~~~lf~~~d~~~~g~i~~~eF~~~~ 111 (226)
+|+||.++....+...-...+. ..+++.. .++++++.+...-|
T Consensus 11 DGTITl~Ds~~~itdtf~~~e~--k~l~~~v---ls~tiS~rd~~g~m 53 (220)
T COG4359 11 DGTITLNDSNDYITDTFGPGEW--KALKDGV---LSKTISFRDGFGRM 53 (220)
T ss_pred CCceEecchhHHHHhccCchHH--HHHHHHH---hhCceeHHHHHHHH
Confidence 5666666666555332222222 2333322 44556665544433
No 200
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=29.01 E-value=1.1e+02 Score=21.39 Aligned_cols=36 Identities=22% Similarity=0.301 Sum_probs=25.4
Q ss_pred CcccHHHHHHHHHhChhhhhhhhccccccccccccc
Q 027239 181 GKIDKEEWRNLVLRHPSLLKNMTLQYLKDITTTFPS 216 (226)
Q Consensus 181 G~Is~~eF~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 216 (226)
..++-++.+.+|..+|.+++-=-+...+.+..+||+
T Consensus 70 ~~ls~~e~~~ll~~~P~LikRPIv~~~~~~~vG~~~ 105 (113)
T cd03033 70 EALDEEEALALMIADPLLIRRPLMQVGDRRMVGFDT 105 (113)
T ss_pred cCCCHHHHHHHHHhCcceeeCCeEEECCEEEecCCH
Confidence 457999999999999988872112234556677753
No 201
>COG4103 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.93 E-value=2.2e+02 Score=21.07 Aligned_cols=91 Identities=14% Similarity=0.151 Sum_probs=53.1
Q ss_pred HHHHhhcccCCCCCCccHHHHHH---HHhccCCcchHHHHHHHHHHcCCCCCCccHHHHHHHHHhhCCCCCcHHHHHHHH
Q 027239 52 ELFKKISSAVIDDGLINKEEFQL---ALFKTNKKESLFADRVFDLFDTKHNGILDFEEFARALSIFHPNSPIDDKIEFSF 128 (226)
Q Consensus 52 ~~F~~~D~~~~~~G~i~~~ef~~---~l~~~~~~~~~~~~~lf~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~F 128 (226)
=+|.-+. -||.++..|... ++.....-+...+..+......-+.-.+++..|...+..-.......+-+..++
T Consensus 34 Llf~Vm~----ADG~v~~~E~~a~r~il~~~f~i~~~~l~ali~~~e~~~~Ea~d~y~fts~l~r~Ld~e~R~eli~~mw 109 (148)
T COG4103 34 LLFHVME----ADGTVSESEREAFRAILKENFGIDGEELDALIEAGEEAGYEAIDLYSFTSVLKRHLDEEQRLELIGLMW 109 (148)
T ss_pred HHHHHHh----cccCcCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 5666666 578888877543 333322222223455544444445557899999998875444334555566777
Q ss_pred HHhcCCCCCceeHHHHHHHH
Q 027239 129 QLYDLKQQGFIERQEVKQMV 148 (226)
Q Consensus 129 ~~~D~d~~G~I~~~e~~~~l 148 (226)
++--.| |.++.-|-.-++
T Consensus 110 eIa~AD--g~l~e~Ed~vi~ 127 (148)
T COG4103 110 EIAYAD--GELDESEDHVIW 127 (148)
T ss_pred HHHHcc--ccccHHHHHHHH
Confidence 776554 556666654443
No 202
>PF11829 DUF3349: Protein of unknown function (DUF3349); InterPro: IPR021784 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 99 to 124 amino acids in length. ; PDB: 2KVC_A 3OL3_B 3OL4_A 2LKY_A.
Probab=28.54 E-value=2e+02 Score=19.71 Aligned_cols=64 Identities=9% Similarity=0.135 Sum_probs=44.9
Q ss_pred ccHHHHHHHHHhhCCCCCcHHHHHHHHHHhcCCCCCceeHHHHHHHHHHHHhhcCCCCCHHHHHHHHH
Q 027239 102 LDFEEFARALSIFHPNSPIDDKIEFSFQLYDLKQQGFIERQEVKQMVVATLTESGMNLSDDVIESIID 169 (226)
Q Consensus 102 i~~~eF~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~ 169 (226)
|.-.+|...++.+.+. ..++++..+-..+-.++....+..++..++..+ .+...++++++.+..
T Consensus 20 vP~~Dy~PLlALL~r~-Ltd~ev~~Va~~L~~~~~~~~~~~dI~~~I~~v---t~~~P~~~di~RV~~ 83 (96)
T PF11829_consen 20 VPPTDYVPLLALLRRR-LTDDEVAEVAAELAARGDPPVDRIDIGVAITRV---TDELPTPEDIERVRA 83 (96)
T ss_dssp B-HHHHHHHHHHHTTT-S-HHHHHHHHHHHHHHTSS-BSCCHHHHHHHHH---CSS-S-HHHHHHHHH
T ss_pred CCCCccHHHHHHhccc-CCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHH---HcCCcCHHHHHHHHH
Confidence 7778888888888874 777788888888766666666888888887555 566677788877763
No 203
>cd07316 terB_like_DjlA N-terminal tellurium resistance protein terB-like domain of heat shock DnaJ-like proteins. Tellurium resistance terB-like domain of the DnaJ-like DjlA proteins. This family represents the terB-like domain of DjlA-like proteins, a subgroup of heat shock DnaJ-like proteins. Escherichia coli DjlA is a type III membrane protein with a small N-terminal transmembrane region and DnaJ-like domain on the extreme C-terminus. Overproduction has been shown to activate the RcsC pathway, which regulates the production of the capsular exopolysaccharide colanic acid. The specific function of this domain is unknown.
Probab=28.17 E-value=1.9e+02 Score=19.35 Aligned_cols=79 Identities=22% Similarity=0.274 Sum_probs=33.4
Q ss_pred CCCCccHHHHHHH---HhccCCcchHHHHHHHHHHcCCCCCCccHHHHHHHHHhhCC--CCCcHHHHHHHHHHhcCCCCC
Q 027239 63 DDGLINKEEFQLA---LFKTNKKESLFADRVFDLFDTKHNGILDFEEFARALSIFHP--NSPIDDKIEFSFQLYDLKQQG 137 (226)
Q Consensus 63 ~~G~i~~~ef~~~---l~~~~~~~~~~~~~lf~~~d~~~~g~i~~~eF~~~~~~~~~--~~~~~~~~~~~F~~~D~d~~G 137 (226)
.||.++..|...+ +...... ......+...+..-.....++.+|...+..... ......-+..++.+--.| |
T Consensus 12 aDG~v~~~E~~~i~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~l~~l~~vA~AD--G 88 (106)
T cd07316 12 ADGRVSEAEIQAARALMDQMGLD-AEARREAIRLFNEGKESDFGLEEYARQFRRACGGRPELLLQLLEFLFQIAYAD--G 88 (106)
T ss_pred ccCCcCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHhCcCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc--C
Confidence 4677776665432 2222211 112233444443333333556666665554321 112223344444444443 4
Q ss_pred ceeHHHH
Q 027239 138 FIERQEV 144 (226)
Q Consensus 138 ~I~~~e~ 144 (226)
.++..|-
T Consensus 89 ~~~~~E~ 95 (106)
T cd07316 89 ELSEAER 95 (106)
T ss_pred CCCHHHH
Confidence 4555544
No 204
>PF05099 TerB: Tellurite resistance protein TerB; InterPro: IPR007791 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Direct interaction between DnaK and djlA is needed for the induction of the wcaABCDE operon which is involved in the synthesis of a colanic acid polysaccharide capsule. The colanic acid capsule may help the bacterium survive conditions outside the host [, ]; PDB: 2H5N_D 2JXU_A.
Probab=28.14 E-value=2.1e+02 Score=20.23 Aligned_cols=81 Identities=22% Similarity=0.192 Sum_probs=42.2
Q ss_pred CCCCccHHHHHHHHHhhC-CCCCcHHHHHHHHHHhcCCCCCceeHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhC
Q 027239 98 HNGILDFEEFARALSIFH-PNSPIDDKIEFSFQLYDLKQQGFIERQEVKQMVVATLTESGMNLSDDVIESIIDKTFEEAD 176 (226)
Q Consensus 98 ~~g~i~~~eF~~~~~~~~-~~~~~~~~~~~~F~~~D~d~~G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d 176 (226)
.||.|+.+|-..+...+. ...........+...++.-.....+..++... + ...++.++...++..++....
T Consensus 36 aDG~v~~~E~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~---l----~~~~~~~~r~~ll~~l~~ia~ 108 (140)
T PF05099_consen 36 ADGEVDPEEIEAIRQLLAERFGLSPEEAEELIELADELKQEPIDLEELLRE---L----RDSLSPEEREDLLRMLIAIAY 108 (140)
T ss_dssp TTSS--CHHHHHHHHHHHHCGCGSCHHHHHHHHHHCHHHHHCCHHHHHHHH---H----CTS--HHHHHHHHHHHHHHCT
T ss_pred cCCCCCHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHhccccHHHHHHH---H----HHhhchHHHHHHHHHHHHHHh
Confidence 467888888665554431 11112233444555554333334455544433 2 566678888888988888877
Q ss_pred CCCCCcccHHH
Q 027239 177 TKHDGKIDKEE 187 (226)
Q Consensus 177 ~~~dG~Is~~e 187 (226)
.| |.++-.|
T Consensus 109 AD--G~~~~~E 117 (140)
T PF05099_consen 109 AD--GEISPEE 117 (140)
T ss_dssp CT--TC-SCCH
T ss_pred cC--CCCCHHH
Confidence 65 5555444
No 205
>PF04876 Tenui_NCP: Tenuivirus major non-capsid protein; InterPro: IPR006960 This entry contains the tenuivirus major non-capsid protein. Proteins accumulate in large amounts in tenuivirus infected cells. They are found in the inclusion bodies that are formed after infection [].
Probab=27.91 E-value=2.6e+02 Score=20.87 Aligned_cols=77 Identities=14% Similarity=0.210 Sum_probs=48.4
Q ss_pred hHHHHHHHHHHcCCCCCCccHHHHHHHHHhhCCCCCcHHHHHHHHHHhcCCCCCceeHHHHHHHHHHHHhhcC-CCCCHH
Q 027239 84 SLFADRVFDLFDTKHNGILDFEEFARALSIFHPNSPIDDKIEFSFQLYDLKQQGFIERQEVKQMVVATLTESG-MNLSDD 162 (226)
Q Consensus 84 ~~~~~~lf~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~I~~~e~~~~l~~~~~~~~-~~~~~~ 162 (226)
..+.+.+...-+.+.++.|++..|..++...+.. .+..- |= .+...++.+++..++..+...+. .....+
T Consensus 82 ~s~Lehllg~~~~~~n~~i~~~~ff~~lQ~~lGd-----WIT~~---~L-kh~n~MSk~Qik~L~~~Ii~~akae~~dtE 152 (175)
T PF04876_consen 82 HSFLEHLLGGEDDSTNGLIDIGKFFDILQPKLGD-----WITKN---FL-KHPNRMSKDQIKTLCEQIIEMAKAESSDTE 152 (175)
T ss_pred HHHHHHHhcCCcCCcccceeHHHHHHHHHHHhhh-----HHHHH---HH-hccchhhHHHHHHHHHHHHHHHhccCCchH
Confidence 3445556555455567889999999999655432 12212 22 23567899999888877755433 455666
Q ss_pred HHHHHHH
Q 027239 163 VIESIID 169 (226)
Q Consensus 163 ~~~~~~~ 169 (226)
+-+.+++
T Consensus 153 ~Ye~vwk 159 (175)
T PF04876_consen 153 HYEKVWK 159 (175)
T ss_pred HHHHHHH
Confidence 6666664
No 206
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=27.43 E-value=1.9e+02 Score=19.20 Aligned_cols=40 Identities=18% Similarity=0.327 Sum_probs=25.0
Q ss_pred CccHHHHHHHHHhhCCCC-------------------CcHHHHHHHHHHhcCCCCCcee
Q 027239 101 ILDFEEFARALSIFHPNS-------------------PIDDKIEFSFQLYDLKQQGFIE 140 (226)
Q Consensus 101 ~i~~~eF~~~~~~~~~~~-------------------~~~~~~~~~F~~~D~d~~G~I~ 140 (226)
.++|+++..-+..+++.. +...++..||+++..+++..++
T Consensus 19 ~~s~e~L~~~v~~~c~~~~~q~ft~kw~DEEGDp~tiSS~~EL~EA~rl~~~n~~~~l~ 77 (83)
T cd06404 19 SISLEELCNEVRDMCRFHNDQPFTLKWIDEEGDPCTISSQMELEEAFRLYELNKDSELN 77 (83)
T ss_pred CcCHHHHHHHHHHHhCCCCCCcEEEEEECCCCCceeecCHHHHHHHHHHHHhcCcccEE
Confidence 577888887776655321 1345577777777766665443
No 207
>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]
Probab=26.65 E-value=2.2e+02 Score=25.69 Aligned_cols=73 Identities=16% Similarity=0.246 Sum_probs=47.4
Q ss_pred HHHHHHHhcCCCCCceeHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHh----CCCCCCcccHHHHHHHHHhChhhh
Q 027239 124 IEFSFQLYDLKQQGFIERQEVKQMVVATLTESGMNLSDDVIESIIDKTFEEA----DTKHDGKIDKEEWRNLVLRHPSLL 199 (226)
Q Consensus 124 ~~~~F~~~D~d~~G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~----d~~~dG~Is~~eF~~~~~~~~~l~ 199 (226)
-..+|..|-...++.+.+-.|..+|+.. |..-++--+..++..+-..- ....-+.++-+.|.+++.....++
T Consensus 88 eDLLFyLiaegq~ekipihKFiTALkst----GLrtsDPRLk~mMd~mKd~dq~~~e~S~gw~LdKDlFKkcI~sSI~lv 163 (622)
T KOG0506|consen 88 EDLLFYLIAEGQSEKIPIHKFITALKST----GLRTSDPRLKDMMDEMKDVDQEENESSSGWLLDKDLFKKCIFSSIVLV 163 (622)
T ss_pred hhhhhHHhhcCCcCcccHHHHHHHHHHc----CCCcCCchHHHHHHHHHHHHhhhcccccceeecHHHHHHhhccchhHH
Confidence 3456888866667899999999986655 76655544555554332222 123345799999999998765444
Q ss_pred h
Q 027239 200 K 200 (226)
Q Consensus 200 ~ 200 (226)
.
T Consensus 164 S 164 (622)
T KOG0506|consen 164 S 164 (622)
T ss_pred H
Confidence 3
No 208
>PF12872 OST-HTH: OST-HTH/LOTUS domain; PDB: 2KPM_A 3S93_B 3RCO_A 2KZV_A.
Probab=25.65 E-value=1.7e+02 Score=18.10 Aligned_cols=42 Identities=14% Similarity=0.264 Sum_probs=24.6
Q ss_pred CCceeHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhChhhhh
Q 027239 136 QGFIERQEVKQMVVATLTESGMNLSDDVIESIIDKTFEEADTKHDGKIDKEEWRNLVLRHPSLLK 200 (226)
Q Consensus 136 ~G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~dG~Is~~eF~~~~~~~~~l~~ 200 (226)
+|.+...++...+.. .+..++...=|.-++.+|+.. .|++++
T Consensus 21 ~g~v~ls~l~~~~~~--------------------~~~~f~~~~yG~~~l~~ll~~---~~~~~~ 62 (74)
T PF12872_consen 21 DGWVSLSQLGQEYKK--------------------KYPDFDPRDYGFSSLSELLES---LPDVVE 62 (74)
T ss_dssp TSSEEHHHHHHHHHH--------------------HHTT--TCCTTSSSHHHHHHT----TTTEE
T ss_pred CceEEHHHHHHHHHH--------------------HCCCCCccccCCCcHHHHHHh---CCCeEE
Confidence 456777777766433 234566666788888888754 344544
No 209
>PF03979 Sigma70_r1_1: Sigma-70 factor, region 1.1; InterPro: IPR007127 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. This entry represents Region 1.1 which modulates DNA binding by region 2 and 4 when sigma is unbound by the core RNA polymerase [, ]. Region 1.1 is also involved in promoter binding.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2K6X_A.
Probab=25.30 E-value=1.3e+02 Score=19.57 Aligned_cols=34 Identities=18% Similarity=0.335 Sum_probs=17.0
Q ss_pred CCCCccHHHHHHHHhccCCcchHHHHHHHHHHcCC
Q 027239 63 DDGLINKEEFQLALFKTNKKESLFADRVFDLFDTK 97 (226)
Q Consensus 63 ~~G~i~~~ef~~~l~~~~~~~~~~~~~lf~~~d~~ 97 (226)
..|+||..++..+|-..... ...+..++..+...
T Consensus 18 ~~G~lT~~eI~~~L~~~~~~-~e~id~i~~~L~~~ 51 (82)
T PF03979_consen 18 KKGYLTYDEINDALPEDDLD-PEQIDEIYDTLEDE 51 (82)
T ss_dssp HHSS-BHHHHHHH-S-S----HHHHHHHHHHHHTT
T ss_pred hcCcCCHHHHHHHcCccCCC-HHHHHHHHHHHHHC
Confidence 46778888888776432222 23356666666443
No 210
>PF04282 DUF438: Family of unknown function (DUF438); InterPro: IPR007380 This is a a group of uncharacterised proteins.
Probab=24.98 E-value=1.2e+02 Score=19.41 Aligned_cols=50 Identities=24% Similarity=0.302 Sum_probs=27.9
Q ss_pred eHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhChhhhh
Q 027239 140 ERQEVKQMVVATLTESGMNLSDDVIESIIDKTFEEADTKHDGKIDKEEWRNLVLRHPSLLK 200 (226)
Q Consensus 140 ~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~dG~Is~~eF~~~~~~~~~l~~ 200 (226)
+.++++.-+... -..++..++..+-..+.+ .| ++.+|-.++|--+.++++
T Consensus 14 ~~e~vk~~F~~~----~~~Vs~~EI~~~Eq~Li~------eG-~~~eeiq~LCdvH~~lf~ 63 (71)
T PF04282_consen 14 DPEEVKEEFKKL----FSDVSASEISAAEQELIQ------EG-MPVEEIQKLCDVHAALFK 63 (71)
T ss_pred CHHHHHHHHHHH----HCCCCHHHHHHHHHHHHH------cC-CCHHHHHHHhHHHHHHHH
Confidence 444455443332 234555555555543333 34 888888888877766655
No 211
>TIGR02787 codY_Gpos GTP-sensing transcriptional pleiotropic repressor CodY. This model represents the full length of CodY, a pleiotropic repressor in Bacillus subtilis and other Firmicutes (low-GC Gram-positive bacteria) that responds to intracellular levels of GTP and branched chain amino acids. The C-terminal helix-turn-helix DNA-binding region is modeled by pfam08222 in Pfam.
Probab=24.92 E-value=2.1e+02 Score=23.29 Aligned_cols=34 Identities=24% Similarity=0.454 Sum_probs=24.5
Q ss_pred cCCCHHHHHHHHHHHHhhcccCCCCCCccHHHHHHHH
Q 027239 40 TVFSVSEIEALYELFKKISSAVIDDGLINKEEFQLAL 76 (226)
Q Consensus 40 ~~~s~~~i~~l~~~F~~~D~~~~~~G~i~~~ef~~~l 76 (226)
..+|-.|++.+..++..++.+ +|+++..++.+-+
T Consensus 175 ~tLSySEleAv~~IL~~L~~~---egrlse~eLAerl 208 (251)
T TIGR02787 175 NTLSYSELEAVEHIFEELDGN---EGLLVASKIADRV 208 (251)
T ss_pred HhccHhHHHHHHHHHHHhccc---cccccHHHHHHHH
Confidence 466777777788888877742 5778877777655
No 212
>cd07177 terB_like tellurium resistance terB-like protein. This family consists of tellurium resistance terB proteins, N-terminal domain of heat shock DnaJ-like proteins, N-terminal domain of Mo-dependent nitrogenase-like proteins, C-terminal domain of ABC transporter ATP-binding proteins, C-terminal domain of serine/threonine protein kinase, and many hypothetical bacterial proteins. The function of this family is unknown.
Probab=24.23 E-value=1.7e+02 Score=19.11 Aligned_cols=42 Identities=12% Similarity=0.110 Sum_probs=22.6
Q ss_pred cHHHHHHHHHhhCCCCCcHHHHHHHHHHhcCCCCCceeHHHHHH
Q 027239 103 DFEEFARALSIFHPNSPIDDKIEFSFQLYDLKQQGFIERQEVKQ 146 (226)
Q Consensus 103 ~~~eF~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~I~~~e~~~ 146 (226)
+...+...............-+..++.+...| |.++..|..-
T Consensus 55 ~~~~~~~~~~~~~~~~~r~~~l~~~~~ia~aD--G~~~~~E~~~ 96 (104)
T cd07177 55 DLAALAALLKELPDAELREALLAALWEVALAD--GELDPEERAL 96 (104)
T ss_pred cHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc--cCCCHHHHHH
Confidence 44555555544433223334456666666654 6677766644
No 213
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=24.01 E-value=1.7e+02 Score=20.92 Aligned_cols=36 Identities=17% Similarity=0.192 Sum_probs=25.3
Q ss_pred CcccHHHHHHHHHhChhhhhhhhccccccccccccc
Q 027239 181 GKIDKEEWRNLVLRHPSLLKNMTLQYLKDITTTFPS 216 (226)
Q Consensus 181 G~Is~~eF~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 216 (226)
..++-++.+.+|..+|.+++==-+..-+.+..+||.
T Consensus 71 ~~ls~~e~i~lm~~~P~LIKRPIi~~~~~~~iGf~~ 106 (126)
T TIGR01616 71 DSIDEASALALMVSDPLLIRRPLMDLGGIRCAGFDR 106 (126)
T ss_pred ccCCHHHHHHHHHhCcCeEeCCEEEECCEEEEcCCH
Confidence 468899999999999988872112234557777753
No 214
>COG5394 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.94 E-value=1.2e+02 Score=22.89 Aligned_cols=20 Identities=25% Similarity=0.519 Sum_probs=11.5
Q ss_pred HhcCCCCCceeHHHHHHHHH
Q 027239 130 LYDLKQQGFIERQEVKQMVV 149 (226)
Q Consensus 130 ~~D~d~~G~I~~~e~~~~l~ 149 (226)
+|+..-+-+||++++.++++
T Consensus 20 LYnT~TSTYVTL~dla~mVk 39 (193)
T COG5394 20 LYNTGTSTYVTLEDLAQMVK 39 (193)
T ss_pred hcccCCceeeeHHHHHHHHh
Confidence 34555555666666666543
No 215
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=22.85 E-value=1.8e+02 Score=25.70 Aligned_cols=84 Identities=18% Similarity=0.121 Sum_probs=51.1
Q ss_pred CCCCccHHHHHHHHhccCCcc--h----HHHHHHHHHHcCCCCCCccHHHHHHHHHhhCCCCCcHHHHHHHHHHhcCCCC
Q 027239 63 DDGLINKEEFQLALFKTNKKE--S----LFADRVFDLFDTKHNGILDFEEFARALSIFHPNSPIDDKIEFSFQLYDLKQQ 136 (226)
Q Consensus 63 ~~G~i~~~ef~~~l~~~~~~~--~----~~~~~lf~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~F~~~D~d~~ 136 (226)
++...+..||..+. ...... + ..+..+-+..|.|.+|.|+.+|=-.++..-..-.+...+-...|. . .|
T Consensus 41 gds~at~nefc~~~-~~~c~s~~dklg~EAir~iHrqmDDD~nG~Id~~ESdeFlrEdmky~~~~~kr~~~fH---~-dD 115 (575)
T KOG4403|consen 41 GDSRATRNEFCEVD-APECKSEQDKLGYEAIRDIHRQMDDDHNGSIDVEESDEFLREDMKYRDSTRKRSEKFH---G-DD 115 (575)
T ss_pred CCchhhhccchhcC-CchhhcccchhhHHHHHHHHHhcccccCCCcccccchHHHHHHhhcccchhhhhhhcc---C-Cc
Confidence 66678888885432 111111 1 225677888899999999998866666542221233333333343 3 35
Q ss_pred CceeHHHHHHHHHHH
Q 027239 137 GFIERQEVKQMVVAT 151 (226)
Q Consensus 137 G~I~~~e~~~~l~~~ 151 (226)
..|+.+++..+++..
T Consensus 116 ~~ItVedLWeaW~~S 130 (575)
T KOG4403|consen 116 KHITVEDLWEAWKES 130 (575)
T ss_pred cceeHHHHHHHHHhh
Confidence 689999999988654
No 216
>PRK12461 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=22.29 E-value=3.8e+02 Score=21.70 Aligned_cols=53 Identities=25% Similarity=0.271 Sum_probs=33.0
Q ss_pred hhcCCCHHHHHHHHHHHHhhcccCCCCCCccHHHHHHHHhccCCcchHHHHHHHHHHcC
Q 027239 38 RETVFSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTNKKESLFADRVFDLFDT 96 (226)
Q Consensus 38 ~~~~~s~~~i~~l~~~F~~~D~~~~~~G~i~~~ef~~~l~~~~~~~~~~~~~lf~~~d~ 96 (226)
....|+++++..+++.|+.+=. +| ++.++-.+.+.... ...+.++.+.+.+..
T Consensus 196 ~r~g~~~~~~~~~~~~~~~~~~----~~-~~~~~~~~~~~~~~-~~~~~~~~~~~f~~~ 248 (255)
T PRK12461 196 RRRGFSSRAIRALKRAYKIIYR----SG-LSVQQAVAELELQQ-FESPEVEELIDFIKA 248 (255)
T ss_pred hhcCCCHHHHHHHHHHHHHHHh----cC-CCHHHHHHHHHHhc-cCCHHHHHHHHHHHc
Confidence 5678999999999999999853 33 45555444443322 223445555555543
No 217
>PF08100 Dimerisation: Dimerisation domain; InterPro: IPR012967 This domain is found at the N terminus of a variety of plant O-methyltransferases. It has been shown to mediate dimerisation of these proteins [].; GO: 0008168 methyltransferase activity, 0046983 protein dimerization activity; PDB: 1ZGJ_A 1ZG3_A 1ZHF_A 1ZGA_A 2QYO_A 1KYW_A 1KYZ_A 3REO_D 1FPX_A 1FP2_A ....
Probab=22.25 E-value=1.1e+02 Score=18.14 Aligned_cols=39 Identities=23% Similarity=0.299 Sum_probs=20.2
Q ss_pred HHHhhcccCCCCCCccHHHHHHHHhccCCcchHHHHHHHHH
Q 027239 53 LFKKISSAVIDDGLINKEEFQLALFKTNKKESLFADRVFDL 93 (226)
Q Consensus 53 ~F~~~D~~~~~~G~i~~~ef~~~l~~~~~~~~~~~~~lf~~ 93 (226)
+|+.+... +++.+|..|+...+..........+.|+++.
T Consensus 11 I~dii~~~--g~~~ls~~eia~~l~~~~p~~~~~L~RimR~ 49 (51)
T PF08100_consen 11 IPDIIHNA--GGGPLSLSEIAARLPTSNPSAPPMLDRIMRL 49 (51)
T ss_dssp HHHHHHHH--TTS-BEHHHHHHTSTCT-TTHHHHHHHHHHH
T ss_pred cHHHHHHc--CCCCCCHHHHHHHcCCCCcchHHHHHHHHHH
Confidence 45555554 5578888888765542111223345666553
No 218
>KOG2871 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.85 E-value=1e+02 Score=26.62 Aligned_cols=63 Identities=14% Similarity=0.151 Sum_probs=37.7
Q ss_pred chHHHHHHHHHHcCCCCCCccHHHHHHHHHhhCCCCCcHHHHHHHHHHhcCCCCCceeHHHHH
Q 027239 83 ESLFADRVFDLFDTKHNGILDFEEFARALSIFHPNSPIDDKIEFSFQLYDLKQQGFIERQEVK 145 (226)
Q Consensus 83 ~~~~~~~lf~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~I~~~e~~ 145 (226)
+++.++|.|+.+|..+.|.|+-+-+-..+.......+..+.+...=+.+|..+-|.|-.+++-
T Consensus 307 ~s~q~rR~f~a~d~~d~nfis~s~~~~vm~~~N~~vse~a~v~l~~~~l~pE~~~iil~~d~l 369 (449)
T KOG2871|consen 307 PSEQLRRNFHAYDPEDNNFISCSGLQIVMTALNRLVSEPAYVMLMRQPLDPESLGIILLEDFL 369 (449)
T ss_pred CCHHHHhhhhccCccCCCeeecHHHHHHHHHhcccccCHHHHHHhcCccChhhcceEEecccc
Confidence 345567777887777777777777666665544322333333433445666666666666543
No 219
>PLN00138 large subunit ribosomal protein LP2; Provisional
Probab=21.52 E-value=3e+02 Score=19.39 Aligned_cols=40 Identities=20% Similarity=0.296 Sum_probs=27.8
Q ss_pred HHHHHHhcCCCCCceeHHHHHHHHHHHHhhcCCCCCHHHHHHHH
Q 027239 125 EFSFQLYDLKQQGFIERQEVKQMVVATLTESGMNLSDDVIESII 168 (226)
Q Consensus 125 ~~~F~~~D~d~~G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~ 168 (226)
..+|-+.-..|+..+|.+++..+++.. |..+....+..++
T Consensus 4 vaAyll~~l~g~~~pta~dI~~IL~Aa----Gvevd~~~~~~f~ 43 (113)
T PLN00138 4 VAAYLLAVLGGNTCPSAEDLKDILGSV----GADADDDRIELLL 43 (113)
T ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHc----CCcccHHHHHHHH
Confidence 345555555666779999999996655 8888776665555
No 220
>PF04558 tRNA_synt_1c_R1: Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1 ; InterPro: IPR007639 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This is a domain found N-terminal to the catalytic domain of glutaminyl-tRNA synthetase (6.1.1.18 from EC) in eukaryotes but not in Escherichia coli. This domain is thought to bind RNA in a non-specific manner, enhancing interactions between the tRNA and enzyme, but is not essential for enzyme function [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 3TL4_X.
Probab=20.95 E-value=2.6e+02 Score=21.13 Aligned_cols=51 Identities=16% Similarity=0.278 Sum_probs=33.2
Q ss_pred CcHHHHHHHHHHhcCCCCCceeHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHH
Q 027239 119 PIDDKIEFSFQLYDLKQQGFIERQEVKQMVVATLTESGMNLSDDVIESIIDKTFEE 174 (226)
Q Consensus 119 ~~~~~~~~~F~~~D~d~~G~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~ 174 (226)
.....+..+++.+-..+...++..+|...+ ..|..+++++++..+...+..
T Consensus 82 kt~~Ql~AA~~Yl~~~~~~~~d~~~Fe~~c-----GVGV~VT~E~I~~~V~~~i~~ 132 (164)
T PF04558_consen 82 KTNLQLDAALKYLKSNPSEPIDVAEFEKAC-----GVGVVVTPEQIEAAVEKYIEE 132 (164)
T ss_dssp -SHHHHHHHHHHHHHHGG-G--HHHHHHTT-----TTT----HHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCCCCCHHHHHHHc-----CCCeEECHHHHHHHHHHHHHH
Confidence 456678999998877766789999999863 457889999999988755543
No 221
>PF09373 PMBR: Pseudomurein-binding repeat; InterPro: IPR018975 Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) is a methanogenic Gram-positive microorganism with a cell wall consisting of pseudomurein. This repeat specifically binds to pseudomurein. This repeat is found at the N terminus of PeiW and PeiP which are pseudomurein binding phage proteins.
Probab=20.74 E-value=1.1e+02 Score=16.21 Aligned_cols=13 Identities=31% Similarity=0.439 Sum_probs=6.8
Q ss_pred CCccHHHHHHHHH
Q 027239 100 GILDFEEFARALS 112 (226)
Q Consensus 100 g~i~~~eF~~~~~ 112 (226)
|+|+++|++....
T Consensus 3 ~~i~~~~~~d~a~ 15 (33)
T PF09373_consen 3 GTISKEEYLDMAS 15 (33)
T ss_pred ceecHHHHHHHHH
Confidence 4555555555443
No 222
>PF02337 Gag_p10: Retroviral GAG p10 protein; InterPro: IPR003322 Retroviral matrix proteins (or major core proteins) are components of envelope-associated capsids, which line the inner surface of virus envelopes and are associated with viral membranes []. Matrix proteins are produced as part of Gag precursor polyproteins. During viral maturation, the Gag polyprotein is cleaved into major structural proteins by the viral protease, yielding the matrix (MA), capsid (CA), nucleocapsid (NC), and some smaller peptides. Gag-derived proteins govern the entire assembly and release of the virus particles, with matrix proteins playing key roles in Gag stability, capsid assembly, transport and budding. Although matrix proteins from different retroviruses appear to perform similar functions and can have similar structural folds, their primary sequences can be very different. This entry represents matrix proteins from beta-retroviruses such as Mason-Pfizer monkey virus (MPMV) (Simian Mason-Pfizer virus) and Mouse mammary tumor virus (MMTV) [, ]. This entry also identifies matrix proteins from several eukaryotic endogenous retroviruses, which arise when one or more copies of the retroviral genome becomes integrated into the host genome [].; GO: 0005198 structural molecule activity, 0019028 viral capsid; PDB: 2F77_X 2F76_X.
Probab=20.57 E-value=2.7e+02 Score=18.75 Aligned_cols=50 Identities=14% Similarity=0.333 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhC-CCCCCcccHHHHHHH
Q 027239 142 QEVKQMVVATLTESGMNLSDDVIESIIDKTFEEAD-TKHDGKIDKEEWRNL 191 (226)
Q Consensus 142 ~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d-~~~dG~Is~~eF~~~ 191 (226)
+-|.++|+.+++.-|..++.+++..++..+-+..- --..|.|+.+.|.+.
T Consensus 8 ~~fv~~Lk~lLk~rGi~v~~~~L~~f~~~i~~~~PWF~~eG~l~~~~W~kv 58 (90)
T PF02337_consen 8 QPFVSILKHLLKERGIRVKKKDLINFLSFIDKVCPWFPEEGTLDLDNWKKV 58 (90)
T ss_dssp HHHHHHHHHHHHCCT----HHHHHHHHHHHHHHTT-SS--SS-HHHHHHHH
T ss_pred hHHHHHHHHHHHHcCeeecHHHHHHHHHHHHHhCCCCCCCCCcCHHHHHHH
Confidence 45667777777777777877776666633222210 023567888777654
No 223
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=20.56 E-value=2.6e+02 Score=23.74 Aligned_cols=11 Identities=36% Similarity=0.601 Sum_probs=4.9
Q ss_pred CceeHHHHHHH
Q 027239 137 GFIERQEVKQM 147 (226)
Q Consensus 137 G~I~~~e~~~~ 147 (226)
|.||.+|-...
T Consensus 301 G~itReeal~~ 311 (343)
T TIGR03573 301 GRITREEAIEL 311 (343)
T ss_pred CCCCHHHHHHH
Confidence 44444444444
No 224
>PLN02508 magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase
Probab=20.53 E-value=4.2e+02 Score=22.65 Aligned_cols=15 Identities=20% Similarity=0.372 Sum_probs=7.0
Q ss_pred cCCCCCceeHHHHHH
Q 027239 132 DLKQQGFIERQEVKQ 146 (226)
Q Consensus 132 D~d~~G~I~~~e~~~ 146 (226)
-..=+|.+-..|+..
T Consensus 89 taEFSGflLYKEl~r 103 (357)
T PLN02508 89 TAEFSGFLLYKELGR 103 (357)
T ss_pred hhhcccchHHHHHHH
Confidence 334445555544444
No 225
>PLN02223 phosphoinositide phospholipase C
Probab=20.51 E-value=4.4e+02 Score=24.20 Aligned_cols=61 Identities=8% Similarity=-0.012 Sum_probs=36.1
Q ss_pred HHHHHHhhcccCCCCCCccHHHHHHHH---hccC---CcchHHHHHHHHHHcCCC--------CCCccHHHHHHHHHh
Q 027239 50 LYELFKKISSAVIDDGLINKEEFQLAL---FKTN---KKESLFADRVFDLFDTKH--------NGILDFEEFARALSI 113 (226)
Q Consensus 50 l~~~F~~~D~~~~~~G~i~~~ef~~~l---~~~~---~~~~~~~~~lf~~~d~~~--------~g~i~~~eF~~~~~~ 113 (226)
++.+|..+. . ++|.|+.+.+.+.| .... ......+++++..+-... .+.++.+.|..++..
T Consensus 18 v~~~f~~~~-~--~~~~m~~~~l~~fl~~l~~~q~e~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~l~~~~f~~~L~s 92 (537)
T PLN02223 18 ILNFFGNEF-H--GYDDDMPELLPRFIELLDTEKDEDGAGLNAAEKIAAELKRRKCDILAFRNLRCLELDHLNEFLFS 92 (537)
T ss_pred HHHHHHHhh-c--CCCCCCHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcccchhhhhccccCHHHHHHHhcC
Confidence 444555553 2 68999999999887 2211 122233455555432221 256999999998854
No 226
>smart00389 HOX Homeodomain. DNA-binding factors that are involved in the transcriptional regulation of key developmental processes
Probab=20.00 E-value=92 Score=18.04 Aligned_cols=25 Identities=20% Similarity=0.308 Sum_probs=20.1
Q ss_pred CCCCCHHHHHhhcCCCHHHHHHHHH
Q 027239 28 RGLEDPEALARETVFSVSEIEALYE 52 (226)
Q Consensus 28 ~~~~~~~~~~~~~~~s~~~i~~l~~ 52 (226)
++..++..++...+++..+|..++.
T Consensus 25 P~~~~~~~la~~~~l~~~qV~~WF~ 49 (56)
T smart00389 25 PSREEREELAAKLGLSERQVKVWFQ 49 (56)
T ss_pred CCHHHHHHHHHHHCcCHHHHHHhHH
Confidence 4457899999999999988887754
Done!