Query 027240
Match_columns 226
No_of_seqs 226 out of 1091
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 11:16:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027240.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027240hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3pfy_A OTU domain-containing p 100.0 5.9E-39 2E-43 269.8 13.7 142 69-212 41-183 (185)
2 3by4_A OTU1, ubiquitin thioest 100.0 5.8E-35 2E-39 250.2 13.3 126 83-213 16-142 (212)
3 3phx_A RNA-directed RNA polyme 100.0 3E-32 1E-36 228.9 12.8 125 87-215 31-164 (185)
4 3phu_A RNA-directed RNA polyme 100.0 1E-31 3.4E-36 231.0 14.3 127 87-217 31-166 (219)
5 1tff_A Ubiquitin thiolesterase 99.9 3.2E-23 1.1E-27 179.6 14.4 95 115-212 133-232 (234)
6 2zfy_A Ubiquitin thioesterase 99.9 4.5E-21 1.5E-25 166.1 15.3 93 115-210 136-234 (234)
7 4dhi_B Ubiquitin thioesterase 99.8 3E-20 1E-24 164.8 13.8 100 115-216 171-279 (284)
8 4ddg_A Ubiquitin-conjugating e 99.8 1.7E-19 5.9E-24 166.8 11.8 93 115-210 301-399 (399)
9 3dkb_A Tumor necrosis factor, 98.9 1.4E-08 4.7E-13 92.2 12.9 128 87-215 112-287 (390)
10 3zrh_A Ubiquitin thioesterase 98.7 6.9E-08 2.4E-12 88.9 10.5 127 87-214 189-352 (454)
11 2yvc_D Neprilysin; protein-pep 50.0 5.7 0.0002 22.0 0.9 17 209-225 7-24 (26)
12 4aq3_A Apoptosis regulator BCL 27.8 56 0.0019 26.0 3.9 97 68-166 12-119 (169)
13 3fz2_A Minor tail protein U; m 26.5 36 0.0012 26.4 2.4 20 110-129 2-21 (134)
No 1
>3pfy_A OTU domain-containing protein 5; structural genomics, structural genomics consortium, SGC, PE C65 otubain, hydrolase; HET: MSE PG4; 1.70A {Homo sapiens} PDB: 3tmp_A* 3tmo_A*
Probab=100.00 E-value=5.9e-39 Score=269.77 Aligned_cols=142 Identities=23% Similarity=0.402 Sum_probs=106.1
Q ss_pred CchhhHHHHHHHHhhHCCcEEEEecCCCchhHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhhcccCCCcHHHHHHhhc
Q 027240 69 NDASFDHERLSERLTTYGLAELQIEGDGNCQFRALADQLFRNPDYHKHVRKEIFKQLKHFRKLYEGYVPMNYKGYLRKMK 148 (226)
Q Consensus 69 ~~~~~~~~~l~~~L~~~gL~~~~V~gDGNClFrAls~qL~~~~~~h~~vR~~vv~~l~~n~~~f~~fv~~~~~~Yl~~m~ 148 (226)
+...++.+...+.|+.+||++++|+|||||||||||+||+++++.|..||+.|++||++|++.|.+|++++|++||++|+
T Consensus 41 ~~~~~e~~~~~~l~~~~gL~~~~I~~DGnCLFrAia~qL~g~~~~h~~LR~~vv~yi~~n~d~f~~Fv~~~~e~Y~~~m~ 120 (185)
T 3pfy_A 41 TVEQQEHWFEKALRDKKGFIIKQMKEDGACLFRAVADQVYGDQDMHEVVRKHCMDYLMKNADYFSNYVTEDFTTYINRKR 120 (185)
T ss_dssp HHHHHHHHHHHHHHHHHCCEEECCCCSTTHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHTHHHHTTCC------------
T ss_pred CHHHHHHHHHHHHHHHCCcEEEeeCCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhh
Confidence 33455655555555899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCChHHHHHHHHhhCCcEEEEEccCCceeEEEc-CCCCCCCCeEEEEeCCCCcceeeecCC
Q 027240 149 KSGEWGDHVTLQAAADRFQAKICLVTSFRDTCYVEII-PKDKNPTRELWLSFWSEVHYNSLYATG 212 (226)
Q Consensus 149 ~~g~WGg~ieL~AlA~~~~v~I~V~~~~~~~~~i~i~-p~~~~~~~~I~L~y~~~~HYdsl~~~~ 212 (226)
++++|||++||+|||++|+++|+|++... +.+.++ +......++|+|+|++++|||||+...
T Consensus 121 ~~~~WGg~iEL~AlS~~~~v~I~V~~~~~--~~i~i~~g~~~~~~~~I~L~Y~~~~HYnSv~~p~ 183 (185)
T 3pfy_A 121 KNNCHGNHIEMQAMAEMYNRPVEVYQYST--EPINTFHGIHQNEDEPIRVSYHRNIHYNSVVNPN 183 (185)
T ss_dssp -----CCHHHHHHHHHHHTSCEEEESSCS--SCSEEECTTSCCTTSCEEEEEETTTEEEEEECC-
T ss_pred CCCccchHHHHHHHHHhhCCcEEEEECCC--CCeEEecCccCCCCCEEEEEECCCCCcccccCCC
Confidence 99999999999999999999999998642 233443 333456789999999999999998653
No 2
>3by4_A OTU1, ubiquitin thioesterase OTU1; ubiquitin hydrolase, deubiquitinase, cell cycle, hydrolase; 1.55A {Saccharomyces cerevisiae} PDB: 3c0r_A
Probab=100.00 E-value=5.8e-35 Score=250.16 Aligned_cols=126 Identities=18% Similarity=0.239 Sum_probs=111.8
Q ss_pred hHCCcEEEEecCCCchhHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhhc-ccCCCcHHHHHHhhccCCCCCChHHHHH
Q 027240 83 TTYGLAELQIEGDGNCQFRALADQLFRNPDYHKHVRKEIFKQLKHFRKLYE-GYVPMNYKGYLRKMKKSGEWGDHVTLQA 161 (226)
Q Consensus 83 ~~~gL~~~~V~gDGNClFrAls~qL~~~~~~h~~vR~~vv~~l~~n~~~f~-~fv~~~~~~Yl~~m~~~g~WGg~ieL~A 161 (226)
...||.+++|||||||||||||+|| ++++.|..||+.|++||++|++.|. .|++++|++||++|+++++|||++||+|
T Consensus 16 ~~~~l~~~~i~~DGnCLFrAva~qL-~~~~~~~~lR~~vv~yi~~n~d~f~e~~~~~~~e~Y~~~m~~~~~WGg~iEL~A 94 (212)
T 3by4_A 16 GENVLSVHPVLDDNSCLFHAIAYGI-FKQDSVRDLREMVSKEVLNNPVKFNDAILDKPNKDYAQWILKMESWGGAIEIGI 94 (212)
T ss_dssp CCSEEEEECCCCSTTHHHHHHHHHH-HSSCCSHHHHHHHHHHHHHCTTTTCHHHHTSCHHHHHHHTTSTTSCCCHHHHHH
T ss_pred CCCCeEEEEeCCCCchHHHHHHHHh-CCchHHHHHHHHHHHHHHHCHHHHhhhhcCCCHHHHHHHhcCCCEEccHHHHHH
Confidence 4558999999999999999999999 9999999999999999999999996 5678999999999999999999999999
Q ss_pred HHHhhCCcEEEEEccCCceeEEEcCCCCCCCCeEEEEeCCCCcceeeecCCC
Q 027240 162 AADRFQAKICLVTSFRDTCYVEIIPKDKNPTRELWLSFWSEVHYNSLYATGD 213 (226)
Q Consensus 162 lA~~~~v~I~V~~~~~~~~~i~i~p~~~~~~~~I~L~y~~~~HYdsl~~~~~ 213 (226)
||++|+++|.|++... .+.+.|.+. . ..++|+|+|+ ++|||||+...+
T Consensus 95 ls~~~~~~I~V~~~~~-~~~~~~~~~-~-~~~~I~L~Y~-g~HYdsl~~~~d 142 (212)
T 3by4_A 95 ISDALAVAIYVVDIDA-VKIEKFNED-K-FDNYILILFN-GIHYDSLTMNEF 142 (212)
T ss_dssp HHHHHTCEEEEEETTT-TEEEEESTT-T-CSEEEEEEEC-SSCEEEEEETTT
T ss_pred HHHHHCCCEEEEECCC-CCeEEeCCC-C-CCCeEEEEEc-CCcceEEecCCC
Confidence 9999999999999752 345556553 2 5789999997 899999999433
No 3
>3phx_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Crimean-congo hemorrhagic fever virus} PDB: 3phw_A 3pt2_A 3pse_A 3prp_A 3prm_A
Probab=99.98 E-value=3e-32 Score=228.95 Aligned_cols=125 Identities=18% Similarity=0.287 Sum_probs=107.6
Q ss_pred cEEEEecCCCchhHHHHHHHHhcC-Ccc-----hHHHHHHHHHHHHhhhhhhcccCCCcHHHHHHhhccCCCCCChHHHH
Q 027240 87 LAELQIEGDGNCQFRALADQLFRN-PDY-----HKHVRKEIFKQLKHFRKLYEGYVPMNYKGYLRKMKKSGEWGDHVTLQ 160 (226)
Q Consensus 87 L~~~~V~gDGNClFrAls~qL~~~-~~~-----h~~vR~~vv~~l~~n~~~f~~fv~~~~~~Yl~~m~~~g~WGg~ieL~ 160 (226)
+.+.+|+|||||||||||+||+++ +.. |..||+.|++||++|++. .+++++|++||++|+++++|||++||+
T Consensus 31 ~~v~rv~gDGnCLFrAva~qL~~~~~~~~~~~~~~~LR~~~~~yi~~~~~~--~~~~~~~~~Y~~~m~~~~~WGg~iEL~ 108 (185)
T 3phx_A 31 FEIVRQPGDGNCFYHSIAELTMPNKTDHSYHYIKRLTESAARKYYQEEPEA--RLVGLSLEDYLKRMLSDNEWGSTLEAS 108 (185)
T ss_dssp EEEECCCSSTTHHHHHHHHHHSTTCCTTTHHHHHHHHHHHHHHHGGGCTTH--HHHCCCHHHHHHHHTSTTCCCBHHHHH
T ss_pred eEEEccCCCCchHHHHHHHHHhCCCccchhhhHHHHHHHHHHHHHHhChHh--hhcCCCHHHHHHHhhCCCccCcHHHHH
Confidence 778889999999999999999998 666 999999999999999998 356889999999999999999999999
Q ss_pred HHHHhhCCcEEEEEccCCc---eeEEEcCCCCCCCCeEEEEeCCCCcceeeecCCCCC
Q 027240 161 AAADRFQAKICLVTSFRDT---CYVEIIPKDKNPTRELWLSFWSEVHYNSLYATGDVP 215 (226)
Q Consensus 161 AlA~~~~v~I~V~~~~~~~---~~i~i~p~~~~~~~~I~L~y~~~~HYdsl~~~~~~p 215 (226)
|+|++|+++|.|++.+..+ ..+.+.+. ...++|+|+|++++|||+|++..+-.
T Consensus 109 Als~~~~v~I~V~~~d~~~~~~~i~~f~~~--~~~~~I~L~Y~g~~HYdsl~~~~~~~ 164 (185)
T 3phx_A 109 MLAKEMGITIIIWTVAASDEVEAGIKFGDG--DVFTAVNLLHSGQTHFDALRILPQFE 164 (185)
T ss_dssp HHHHHHCCCEEEEEC--CCBCCEEEEESSC--CTTTSEEEEEETTTEEEEEEECGGGC
T ss_pred HHHHHHCCcEEEEEecCCCCceEEEEcCCC--CCCCEEEEEECCCcCchhceECCCCC
Confidence 9999999999999865443 23455543 34789999998879999999987543
No 4
>3phu_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase; 2.20A {Crimean-congo hemorrhagic fever VIRUSIBAR10200}
Probab=99.97 E-value=1e-31 Score=230.98 Aligned_cols=127 Identities=18% Similarity=0.288 Sum_probs=110.0
Q ss_pred cEEEEecCCCchhHHHHHHHHhcC-Ccc-----hHHHHHHHHHHHHhhhhhhcccCCCcHHHHHHhhccCCCCCChHHHH
Q 027240 87 LAELQIEGDGNCQFRALADQLFRN-PDY-----HKHVRKEIFKQLKHFRKLYEGYVPMNYKGYLRKMKKSGEWGDHVTLQ 160 (226)
Q Consensus 87 L~~~~V~gDGNClFrAls~qL~~~-~~~-----h~~vR~~vv~~l~~n~~~f~~fv~~~~~~Yl~~m~~~g~WGg~ieL~ 160 (226)
+.+.+|+|||||||||||+||+++ +.. |..||+.|++||++|++. .+++++|++||++|+++|+|||++||+
T Consensus 31 ~~V~rvpgDGnCLFrAVs~qL~~~~~~~~~~~~h~~LR~~va~yi~~n~d~--~~~~~~feeY~~~m~~~g~WGG~iEL~ 108 (219)
T 3phu_A 31 FEIVRQPGDGNCFYHSIAELTMPNKTDHSYHYIKRLTESAARKYYQEEPEA--RLVGLSLEDYLKRMLSDNEWGSTLEAS 108 (219)
T ss_dssp EEEECCCCSSCHHHHHHHHHHCTTCCTTTHHHHHHHHHHHHHHHGGGCHHH--HHHCCCHHHHHHHHHSTTCCCCHHHHH
T ss_pred eEEEccCCCCchHHHHHHHHHhCCCccchhhhHHHHHHHHHHHHHHhChhh--hhcCCCHHHHHHHhcCCCccCCHHHHH
Confidence 778899999999999999999998 566 899999999999999998 356889999999999999999999999
Q ss_pred HHHHhhCCcEEEEEccCC--c-eeEEEcCCCCCCCCeEEEEeCCCCcceeeecCCCCCCC
Q 027240 161 AAADRFQAKICLVTSFRD--T-CYVEIIPKDKNPTRELWLSFWSEVHYNSLYATGDVPTR 217 (226)
Q Consensus 161 AlA~~~~v~I~V~~~~~~--~-~~i~i~p~~~~~~~~I~L~y~~~~HYdsl~~~~~~p~~ 217 (226)
|+|++|+++|+|++.+.. . ..+.+.+. ...++|+|+|++++|||+|++..+....
T Consensus 109 AlS~~~~v~I~V~~~d~~g~~~~i~~fge~--~~~~~I~L~Y~g~~HYdSL~~~~d~~~~ 166 (219)
T 3phu_A 109 MLAKEMGITIIIWTVAASDEVEAGIKFGDG--DVFTAVNLLHSGQTHFDALRILPQFETD 166 (219)
T ss_dssp HHHHHTTCCEEEEEESSSSBEEEEEEESSC--CTTTSEEEEEETTTEEEEEEECTTTCCS
T ss_pred HHHHHhCCCEEEEEecCCCCceeEEEecCC--CCCCeEEEEECCCcCchhheECCCCCCC
Confidence 999999999999986544 2 34555553 3478999999888999999998876443
No 5
>1tff_A Ubiquitin thiolesterase protein OTUB2; hydrolase; 2.10A {Homo sapiens} SCOP: d.3.1.11
Probab=99.90 E-value=3.2e-23 Score=179.64 Aligned_cols=95 Identities=15% Similarity=0.283 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHHhhhhhhcccCCC--cHHHHHH-hhccCCCCCChHHHHHHHHhhCCcEEEEEccCCceeEE--EcCCCC
Q 027240 115 KHVRKEIFKQLKHFRKLYEGYVPM--NYKGYLR-KMKKSGEWGDHVTLQAAADRFQAKICLVTSFRDTCYVE--IIPKDK 189 (226)
Q Consensus 115 ~~vR~~vv~~l~~n~~~f~~fv~~--~~~~Yl~-~m~~~g~WGg~ieL~AlA~~~~v~I~V~~~~~~~~~i~--i~p~~~ 189 (226)
..+|..+..||++|++.|.+|+++ ++++||+ .+...++||||+||+|||++|+++|.|+..++...-+. ..|.
T Consensus 133 ~~lR~lta~~i~~~~d~f~pFi~~~~~~~~yC~~~ve~~~~~~~~iei~ALa~aL~v~I~V~~~d~~~~~~~~~~~~~-- 210 (234)
T 1tff_A 133 QFLRLLTSAFIRNRADFFRHFIDEEMDIKDFCTHEVEPMATECDHIQITALSQALSIALQVEYVDEMDTALNHHVFPE-- 210 (234)
T ss_dssp HHHHHHHHHHHHHTHHHHGGGSCTTSCHHHHHHHHTSSTTCCCCHHHHHHHHHHHTCCEEEEECC-------CCCCCC--
T ss_pred HHHHHHHHHHHHHCHHHHhhhhcCCCCHHHHHHHHhhhhhcccccHHHHHHHHHhCCCEEEEEcCCCCCccccccCCC--
Confidence 458999999999999999999975 8999999 89999999999999999999999999998665431121 1232
Q ss_pred CCCCeEEEEeCCCCcceeeecCC
Q 027240 190 NPTRELWLSFWSEVHYNSLYATG 212 (226)
Q Consensus 190 ~~~~~I~L~y~~~~HYdsl~~~~ 212 (226)
...+.|+|+|. ++|||+|++.+
T Consensus 211 ~~~~~I~LlY~-pgHYdily~~~ 232 (234)
T 1tff_A 211 AATPSVYLLYK-TSHYNILYAAD 232 (234)
T ss_dssp CSSCSEEEEEE-TTEEEEEEECC
T ss_pred CCCCeEEEEEC-CCCceecccCC
Confidence 35678999996 55999999864
No 6
>2zfy_A Ubiquitin thioesterase OTUB1; otubain, structural genomics, structural genomics consortium, SGC, alternative splicing, hydrolase, immune response; 1.69A {Homo sapiens} PDB: 4ddg_B 4ddi_A
Probab=99.86 E-value=4.5e-21 Score=166.13 Aligned_cols=93 Identities=19% Similarity=0.282 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHHhhhhhhcccCCC--cHHHHHH-hhccCCCCCChHHHHHHHHhhCCcEEEEEccCCc---eeEEEcCCC
Q 027240 115 KHVRKEIFKQLKHFRKLYEGYVPM--NYKGYLR-KMKKSGEWGDHVTLQAAADRFQAKICLVTSFRDT---CYVEIIPKD 188 (226)
Q Consensus 115 ~~vR~~vv~~l~~n~~~f~~fv~~--~~~~Yl~-~m~~~g~WGg~ieL~AlA~~~~v~I~V~~~~~~~---~~i~i~p~~ 188 (226)
..+|..++.||+.|++.|.+|+++ ++++||+ .+..+++||||++|+|||++|+++|.|+..++.. ......|.
T Consensus 136 ~~lR~lta~yi~~~~d~f~pFi~~~~~~e~yc~~~ve~~~~~~~~i~i~ALa~al~v~I~V~~~d~~~~~~v~~~~f~~- 214 (234)
T 2zfy_A 136 VYLRLLTSGYLQRESKFFEHFIEGGRTVKEFCQQEVEPMCKESDHIHIIALAQALSVSIQVEYMDRGEGGTTNPHIFPE- 214 (234)
T ss_dssp HHHHHHHHHHHHHTHHHHGGGCCSSCCHHHHHHHHTSSTTCCCCHHHHHHHHHHHTCCEEEEECC-CCSSCCEEEEEST-
T ss_pred HHHHHHHHHHHHHCHHHHhcccCCCCCHHHHHHHHhhhHhhcCCHHHHHHHHHHhCCCEEEEEcCCCCCCcccceeCCC-
Confidence 368999999999999999999975 8999997 6999999999999999999999999999866542 11223343
Q ss_pred CCCCCeEEEEeCCCCcceeeec
Q 027240 189 KNPTRELWLSFWSEVHYNSLYA 210 (226)
Q Consensus 189 ~~~~~~I~L~y~~~~HYdsl~~ 210 (226)
...+.|+|+|. ++|||+||+
T Consensus 215 -~~~p~I~LlY~-pgHYdiLy~ 234 (234)
T 2zfy_A 215 -GSEPKVYLLYR-PGHYDILYK 234 (234)
T ss_dssp -TCCCSEEEEEE-TTEEEEEEC
T ss_pred -CCCCeEEEEEC-CCCcccCCC
Confidence 34678999997 469999986
No 7
>4dhi_B Ubiquitin thioesterase otubain-like; ubiquitin E2 enzyme fold, ubiquitination, hydrolase-ligase C; 1.80A {Caenorhabditis elegans} PDB: 4dhj_A 4dhz_A
Probab=99.83 E-value=3e-20 Score=164.76 Aligned_cols=100 Identities=16% Similarity=0.221 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHHhhhhhhcccCCC--cHHHHHH-hhccCCCCCChHHHHHHHHhhCCcEEEEEccCC--c--eeEE-EcC
Q 027240 115 KHVRKEIFKQLKHFRKLYEGYVPM--NYKGYLR-KMKKSGEWGDHVTLQAAADRFQAKICLVTSFRD--T--CYVE-IIP 186 (226)
Q Consensus 115 ~~vR~~vv~~l~~n~~~f~~fv~~--~~~~Yl~-~m~~~g~WGg~ieL~AlA~~~~v~I~V~~~~~~--~--~~i~-i~p 186 (226)
..+|..+..||+.|++.|.+|+++ ++++||+ .+...++||||++|+|||++|+++|.|+..++. + .... + |
T Consensus 171 ~~LRllts~yi~~~~d~f~pFi~~~~~v~~yC~~eVe~~~~e~d~leI~ALa~aL~v~I~V~ylDrs~g~~v~~h~~f-p 249 (284)
T 4dhi_B 171 MFFRLITSAFLKQNSEEYAPFIDEGMTVAQYCEQEIEPMWKDADHLAINSLIKAAGTRVRIEYMDRTAAPNGGWHYDI-P 249 (284)
T ss_dssp HHHHHHHHHHHHHTHHHHGGGSCTTCCHHHHHHHHTSSTTCCCCHHHHHHHHHHTTCCEEEEESSGGGCTTSSSEEEE-S
T ss_pred HHHHHHHHHHHHHCHHHHHhhcCCCCCHHHHHHHhceehhhcccHHHHHHHHHHhCCcEEEEEecCCCCCCCcccccC-C
Confidence 468999999999999999999975 8999998 899999999999999999999999999876542 1 1222 3 6
Q ss_pred CCC-CCCCeEEEEeCCCCcceeeecCCCCCC
Q 027240 187 KDK-NPTRELWLSFWSEVHYNSLYATGDVPT 216 (226)
Q Consensus 187 ~~~-~~~~~I~L~y~~~~HYdsl~~~~~~p~ 216 (226)
... ...+.|+|.| .++|||.||+....|.
T Consensus 250 ~~~~~~~p~I~LLY-rpgHYDILY~~~p~~~ 279 (284)
T 4dhi_B 250 SDDQQIAPEITLLY-RPGHYDVIYKKDSTEA 279 (284)
T ss_dssp CCCSCCCCSEEEEE-ETTEEEEEEECC----
T ss_pred CCCCCCCCEEEEee-cCCCccccccCCCCch
Confidence 543 2347899999 5789999999986654
No 8
>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A
Probab=99.80 E-value=1.7e-19 Score=166.84 Aligned_cols=93 Identities=19% Similarity=0.283 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHHhhhhhhcccCCC--cHHHHHH-hhccCCCCCChHHHHHHHHhhCCcEEEEEccCC-c-e-eEEEcCCC
Q 027240 115 KHVRKEIFKQLKHFRKLYEGYVPM--NYKGYLR-KMKKSGEWGDHVTLQAAADRFQAKICLVTSFRD-T-C-YVEIIPKD 188 (226)
Q Consensus 115 ~~vR~~vv~~l~~n~~~f~~fv~~--~~~~Yl~-~m~~~g~WGg~ieL~AlA~~~~v~I~V~~~~~~-~-~-~i~i~p~~ 188 (226)
..+|..+..||+.|++.|.+|+++ ++++||+ .+...++||||++|+|||+.|+++|.|+..++. . . .....|.
T Consensus 301 ~~lRllts~~i~~~~d~f~pFi~~~~~v~~yc~~~ve~~~~e~d~l~I~ALa~al~v~I~V~yld~~~~~~v~~~~~~~- 379 (399)
T 4ddg_A 301 VYLRLLTSGYLQRESKFFEHFIEGGRTVKEFCQQEVEPMCKESDHIHIIALAQALSVSIQVEYMDRGEGGTTNPHIFPE- 379 (399)
T ss_dssp HHHHHHHHHHHHHTHHHHGGGSSSSCCHHHHHHHHTSSTTCCBCHHHHHHHHHHHTCCCEEEECSCCSSSCCCEEETTT-
T ss_pred HHHHHHHHHHHHHCHHHHhcccCCCCCHHHHHHHhceeHHhhCcHHHHHHHHHHcCCcEEEEEcCCCCCCccceeeCCC-
Confidence 458999999999999999999975 7999999 899999999999999999999999999875542 1 1 1122453
Q ss_pred CCCCCeEEEEeCCCCcceeeec
Q 027240 189 KNPTRELWLSFWSEVHYNSLYA 210 (226)
Q Consensus 189 ~~~~~~I~L~y~~~~HYdsl~~ 210 (226)
...+.|+|.| ..+|||.||+
T Consensus 380 -~~~~~I~LLY-rPgHYDiLY~ 399 (399)
T 4ddg_A 380 -GSEPKVYLLY-RPGHYDILYK 399 (399)
T ss_dssp -TCCCCCEEEE-ETBEEEEEEC
T ss_pred -CCCCEEEEEE-cCCccccCCC
Confidence 3467899999 5779999985
No 9
>3dkb_A Tumor necrosis factor, alpha-induced protein 3; OTU domain, DUB domain, apoptosis, cytoplasm, DNA-binding, hydrolase, metal-binding, nucleus; 2.50A {Homo sapiens} PDB: 2vfj_A
Probab=98.90 E-value=1.4e-08 Score=92.18 Aligned_cols=128 Identities=18% Similarity=0.311 Sum_probs=88.0
Q ss_pred cEEEEecCCCchhHHHHHHHHhcCCcchHHHHHHHHHHHHhhhh-h-----------hcccCC-----------CcHHHH
Q 027240 87 LAELQIEGDGNCQFRALADQLFRNPDYHKHVRKEIFKQLKHFRK-L-----------YEGYVP-----------MNYKGY 143 (226)
Q Consensus 87 L~~~~V~gDGNClFrAls~qL~~~~~~h~~vR~~vv~~l~~n~~-~-----------f~~fv~-----------~~~~~Y 143 (226)
|....+.||||||.+|+|.+++|.++....+|+.+.+-|+.... . +..|.. .+|+.-
T Consensus 112 L~pL~t~GDGnCLLHAvSqamWGv~DrdlvLRkaL~~~L~~~~~~~fr~RW~~e~~~~q~~~~~gL~y~e~ew~~EW~~I 191 (390)
T 3dkb_A 112 LVALKTNGDGNCLMHATSQYMWGVQDTDLVLRKALFSTLKETDTRNFKFRWQLESLKSQEFVETGLCYDTRNWNDEWDNL 191 (390)
T ss_dssp EEEBCCCCSSCHHHHHHHHHHHSSCSTTCHHHHHHHHHHHHSCCHHHHHHHHHHHHCCCSSCC----CCSSCSSHHHHHH
T ss_pred eEEEEecCCCchHHHHHhHHhcCCCCHhHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhhhHhhcccccHHHHHHHHHHH
Confidence 45667899999999999999999999999999999998886431 1 122321 245555
Q ss_pred HHhhccCC------C-C--CChHHHHHHHHhhCCcEEEEEcc--CC---c-ee--E----EEcCC----CCCCCCeEEEE
Q 027240 144 LRKMKKSG------E-W--GDHVTLQAAADRFQAKICLVTSF--RD---T-CY--V----EIIPK----DKNPTRELWLS 198 (226)
Q Consensus 144 l~~m~~~g------~-W--Gg~ieL~AlA~~~~v~I~V~~~~--~~---~-~~--i----~i~p~----~~~~~~~I~L~ 198 (226)
++..+... . + -.++.+.++|+++++||+||... ++ . .+ + .|.|- ......||.|+
T Consensus 192 v~~Asp~~~~~~~~~~y~sLEeiHIFvLAhVLRRPIIV~~d~~lr~~~~Ge~~~Pi~f~GIYLPLlwpp~~C~rsPI~Lg 271 (390)
T 3dkb_A 192 IKMASTDTPMARSGLQYNSLEEIHIFVLCNILRRPIIVISDKMLRSLESGSNFAPLKVGGIYLPLHWPAQECYRYPIVLG 271 (390)
T ss_dssp HHHTSSCCCSSSSSCSSCCCCHHHHHHHHHHTTSCEEEEECCCCTTCCCC----CCCCCEEECCTTSCTTSSCSSCEEEE
T ss_pred HHHhCCCCCCCCCcchhhhHHHHHHHHHHHHhcCCEEEEechhhccccCCCccCcCccCceecCCcCCHHHccCCceEEE
Confidence 54433221 1 2 24888999999999999999622 11 1 11 1 12332 23346799999
Q ss_pred eCCCCcceeeecCCCCC
Q 027240 199 FWSEVHYNSLYATGDVP 215 (226)
Q Consensus 199 y~~~~HYdsl~~~~~~p 215 (226)
|.+ +||.+|+.+++-+
T Consensus 272 Y~s-~HFsaLV~me~~~ 287 (390)
T 3dkb_A 272 YDS-HHFVPLVTLKDSG 287 (390)
T ss_dssp ECS-SCEEEEEEBCSSS
T ss_pred ecc-CceeeeeecccCC
Confidence 964 7999999987543
No 10
>3zrh_A Ubiquitin thioesterase zranb1; hydrolase, deubiquitinating enzyme, WNT signaling, ovarian T domain; 2.23A {Homo sapiens}
Probab=98.69 E-value=6.9e-08 Score=88.93 Aligned_cols=127 Identities=13% Similarity=0.143 Sum_probs=91.3
Q ss_pred cEEEEecCCCchhHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhh-c---------------ccC--C----CcHHHHH
Q 027240 87 LAELQIEGDGNCQFRALADQLFRNPDYHKHVRKEIFKQLKHFRKLY-E---------------GYV--P----MNYKGYL 144 (226)
Q Consensus 87 L~~~~V~gDGNClFrAls~qL~~~~~~h~~vR~~vv~~l~~n~~~f-~---------------~fv--~----~~~~~Yl 144 (226)
|......||||||-+|+|..++|.++....+|+.+.+-|++....| . .|. + .+|+.-+
T Consensus 189 L~pL~t~GDGNCLLHAvSqamWGV~DrdlvLRkaL~~~L~~~~~~f~~RW~~~e~~q~q~~gL~y~lde~ewq~EW~~iv 268 (454)
T 3zrh_A 189 LYALWNRTAGDCLLDSVLQATWGIYDKDSVLRKALHDSLHDCSHWFYTRWKDWESWYSQSFGLHFSLREEQWQEDWAFIL 268 (454)
T ss_dssp EEEBCCCCSSCHHHHHHHHTTTSSCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHHH
T ss_pred eeEeeecCCCccHHHHHHHHhhcccCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHH
Confidence 4556789999999999999999999999999999999888633221 1 122 1 2455555
Q ss_pred HhhccCCCCCChHHHHHHHHhhCCcEEEEEccC-----Ccee--E----EEcCCC----CCCCCeEEEEeCCCCcceeee
Q 027240 145 RKMKKSGEWGDHVTLQAAADRFQAKICLVTSFR-----DTCY--V----EIIPKD----KNPTRELWLSFWSEVHYNSLY 209 (226)
Q Consensus 145 ~~m~~~g~WGg~ieL~AlA~~~~v~I~V~~~~~-----~~~~--i----~i~p~~----~~~~~~I~L~y~~~~HYdsl~ 209 (226)
+..+.+|.=-.++.+.++|+++++||+||...- ...+ + .|.|-. .....||.|+|. ..||.+|+
T Consensus 269 ~~As~Pg~sLEeiHIFvLAhVLRRPIIV~~d~~lrs~~Ge~l~pi~f~GIYLPLlwpp~~C~rsPIvLgY~-~gHFsaLV 347 (454)
T 3zrh_A 269 SLASQPGASLEQTHIFVLAHILRRPIIVYGVKYYKSFRGETLGYTRFQGVYLPLLWEQSFCWKSPIALGYT-RGHFSALV 347 (454)
T ss_dssp HHTTSTTCCCCHHHHHHHHHHTTSCEEEEECSSCC-----CCCCCCCCEEECCTTSCGGGSCSCCEEEEEE-TTEEEEEE
T ss_pred HHhcCCcchHHHHHHHHHHHHhcCCeEEeccccccccCCCcCCCcccceeeccCcCCHHHhcCCceEEEec-ccceeeee
Confidence 555677766678999999999999999997421 1011 1 133422 234579999996 46999999
Q ss_pred cCCCC
Q 027240 210 ATGDV 214 (226)
Q Consensus 210 ~~~~~ 214 (226)
.+++-
T Consensus 348 ~~~~~ 352 (454)
T 3zrh_A 348 AMEND 352 (454)
T ss_dssp EBCCC
T ss_pred ecccc
Confidence 98864
No 11
>2yvc_D Neprilysin; protein-peptide complex, cell adhesion; 3.20A {Mus musculus}
Probab=49.99 E-value=5.7 Score=21.96 Aligned_cols=17 Identities=24% Similarity=0.358 Sum_probs=10.5
Q ss_pred ecCCCCCCCCccc-cccC
Q 027240 209 YATGDVPTRKPRK-KYWL 225 (226)
Q Consensus 209 ~~~~~~p~~~~~~-~~~~ 225 (226)
-.+.++...+||| .+|+
T Consensus 7 mditdinapkpkkk~rws 24 (26)
T 2yvc_D 7 MDITDINAPKPKKKQRXX 24 (26)
T ss_pred cccccccCCCcchhhccc
Confidence 3455666666655 4775
No 12
>4aq3_A Apoptosis regulator BCL-2, BCL-2-like protein 1; chimera; HET: 398; 2.40A {Homo sapiens} PDB: 1g5m_A 1gjh_A 1ysw_A* 2o21_A* 2o22_A*
Probab=27.77 E-value=56 Score=26.01 Aligned_cols=97 Identities=12% Similarity=0.158 Sum_probs=54.7
Q ss_pred CCchhhHHHHHHHHhhHCCcEEEEecCCCchhHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhhcccC------CC---
Q 027240 68 VNDASFDHERLSERLTTYGLAELQIEGDGNCQFRALADQLFRNPDYHKHVRKEIFKQLKHFRKLYEGYV------PM--- 138 (226)
Q Consensus 68 ~~~~~~~~~~l~~~L~~~gL~~~~V~gDGNClFrAls~qL~~~~~~h~~vR~~vv~~l~~n~~~f~~fv------~~--- 138 (226)
++..++=.+-+.-+|.+.|+.-...+ ..=-.++..-+-...+.-+..||...-+..++++..|...+ ++
T Consensus 12 ~~~r~lv~~yi~~kL~q~g~~~~~~~--~~~~~~~~~~~~~~~~~v~~~Lr~igdele~~~~~~f~~~~~~L~it~~~a~ 89 (169)
T 4aq3_A 12 YDNREIVMKYIHYKLSQRGYEWDAGD--DVEENRTEAPEGTESEVVHLALRQAGDDFSRRYRGDFAEMSSQLHLTPFTAR 89 (169)
T ss_dssp CCHHHHHHHHHHHHHHHTTCCCC---------------------CHHHHHHHHHHHHHHHTHHHHHHHHHHCCCCTTTHH
T ss_pred CChHHHHHHHHHHHHHHcCCCcCccc--ccccccCCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHHcCCCCCcHH
Confidence 34445555778889999998653211 11011222222234556788899888888888888887653 22
Q ss_pred -cHHHHHHhhccCC-CCCChHHHHHHHHhh
Q 027240 139 -NYKGYLRKMKKSG-EWGDHVTLQAAADRF 166 (226)
Q Consensus 139 -~~~~Yl~~m~~~g-~WGg~ieL~AlA~~~ 166 (226)
.|.+=.+.|-.+| .||-=+.|.+++-.+
T Consensus 90 ~~F~~Va~elF~dGiNWGRIVaLfaF~g~L 119 (169)
T 4aq3_A 90 GRFATVVEELFRDGVNWGRIVAFFEFGGVM 119 (169)
T ss_dssp HHHHHHHHHHTTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 2333344555555 599999998887554
No 13
>3fz2_A Minor tail protein U; mixed alpha-beta fold, viral protein; 2.70A {Enterobacteria phage lambda} SCOP: d.323.1.1 PDB: 3fzb_A 1z1z_A
Probab=26.47 E-value=36 Score=26.43 Aligned_cols=20 Identities=15% Similarity=0.303 Sum_probs=16.6
Q ss_pred CCcchHHHHHHHHHHHHhhh
Q 027240 110 NPDYHKHVRKEIFKQLKHFR 129 (226)
Q Consensus 110 ~~~~h~~vR~~vv~~l~~n~ 129 (226)
+...|.+||++|++.|+.+-
T Consensus 2 ~~~iHt~IR~aVld~L~~~~ 21 (134)
T 3fz2_A 2 SHMKHTELRAAVLDALEKHD 21 (134)
T ss_dssp -CCHHHHHHHHHHHHHHHHC
T ss_pred CcchHHHHHHHHHHHHHhcC
Confidence 45679999999999999874
Done!