Query 027241
Match_columns 226
No_of_seqs 125 out of 485
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 11:18:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027241.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027241hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b0y_A Heme-binding protein 2; 100.0 5.9E-56 2E-60 380.9 19.5 180 27-224 38-221 (227)
2 2gov_A P22HBP, heme-binding pr 100.0 4E-56 1.4E-60 374.5 17.9 178 27-222 14-195 (195)
3 3r8j_A Heme-binding protein 2; 100.0 6.8E-56 2.3E-60 377.3 18.9 179 28-224 20-202 (212)
4 3e0h_A Uncharacterized protein 98.3 3.4E-05 1.2E-09 60.3 15.7 148 44-223 8-157 (158)
5 1jyh_A DNA gyrase inhibitory p 98.3 1.4E-05 4.7E-10 60.6 13.0 153 44-225 2-156 (157)
6 1r8e_A Multidrug-efflux transp 96.7 0.079 2.7E-06 44.8 15.5 152 42-222 121-277 (278)
7 3b49_A LIN2189 protein; BIG 86 96.3 0.13 4.6E-06 42.0 14.3 165 44-222 24-211 (211)
8 3lur_A Putative bacterial tran 92.9 1 3.5E-05 34.6 10.2 73 147-223 85-158 (158)
9 1d5y_A ROB transcription facto 90.6 1.1 3.9E-05 37.4 8.7 73 147-224 210-288 (292)
10 3gk6_A Integron cassette prote 86.9 9.4 0.00032 29.7 11.6 66 147-222 103-170 (170)
11 3e0h_A Uncharacterized protein 82.7 7.6 0.00026 29.2 8.6 70 148-223 8-79 (158)
12 3b49_A LIN2189 protein; BIG 86 72.3 21 0.00072 28.5 8.8 43 147-189 23-71 (211)
13 1jyh_A DNA gyrase inhibitory p 67.9 20 0.00067 25.7 7.2 70 148-222 2-72 (157)
14 1r8e_A Multidrug-efflux transp 55.3 18 0.0006 30.0 5.4 73 146-223 121-196 (278)
15 2dix_A Interferon-inducible do 46.2 50 0.0017 22.7 5.7 63 21-87 14-83 (84)
16 2q3l_A Uncharacterized protein 31.1 79 0.0027 23.2 5.1 42 148-189 10-51 (126)
17 1d5y_A ROB transcription facto 30.4 1E+02 0.0035 25.1 6.2 58 147-207 124-185 (292)
18 2ook_A Hypothetical protein; s 28.6 1.3E+02 0.0044 22.0 5.9 42 148-189 10-53 (127)
No 1
>4b0y_A Heme-binding protein 2; apoptosis; 3.50A {Homo sapiens}
Probab=100.00 E-value=5.9e-56 Score=380.88 Aligned_cols=180 Identities=27% Similarity=0.388 Sum_probs=154.8
Q ss_pred cCCCCCCCCeEEEEe----cCCeEEEEeCCceEEEEEcCCCCccChhhhhHHHHHHHHhhccCCCCCcccCCCCcEEEEE
Q 027241 27 AVPDLETVKFKVLSR----RGQYEIREVESYFIAETTMPGRTGFDLNGASRSFNVLAEYLFGKNTKRETMEMTTPVITRK 102 (226)
Q Consensus 27 ~~~~~E~P~Y~vl~~----~~~yEiR~Y~~~~wa~t~v~~~~~~~~~a~~~gF~~L~~YI~G~N~~~~ki~MT~PV~~~~ 102 (226)
.|+++|||+|+||++ .++||||+|++++||+|++.+.+. .+|...||++|++||+|+|.++.+|+||+||++++
T Consensus 38 ~~~~~E~P~Y~vl~~~~~~~~~yEiR~Y~~~~wast~v~~~~~--~~A~~~gF~~L~~YI~G~N~~~~kI~MTaPV~t~~ 115 (227)
T 4b0y_A 38 AAQAVETPGWKAPEDAGPQPGSYEIRHYGPAKWVSTSVESMDW--DSAIQTGFTKLNSYIQGKNEKEMKIKMTAPVTSYV 115 (227)
T ss_dssp ---CCBCCCEECCC------CCSEEEEECCEEEEEEEEEESCH--HHHHHHHHHHHHHHHHTCBTTCCCCCCBSCEEEEE
T ss_pred ccCCCCCCCeEEEEecccCCCCEEEEEcCCceEEEEEEeCCCH--HHHHHHHHHHHHHHhhcCCCCCCccccccCEEEEE
Confidence 378999999999999 899999999999999999976332 24678899999999999999999999999999998
Q ss_pred ecCCCcccccccccccccccCCCeEEEEEEeecCCCCCCCCCCCCCeEEEEeCCeEEEEEEeCCcCChHHHHHHHHHHHH
Q 027241 103 TQSDGEKMEMTTPVISKKLEDQDKWQMSFVMPSKYGANLPLPKDPSVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKLRD 182 (226)
Q Consensus 103 ~~~~~~~i~mt~pv~~~~~~~~~~~tmsF~lP~~~~~~pP~P~d~~V~i~~~p~~~vav~~F~G~~~~~~~~~~~~~L~~ 182 (226)
.++++ |+ |.+.++|+|+||++||++||+|+|++|+|+++|+++|||++|+|+++++++.+++++|++
T Consensus 116 ~p~~~-------~~------~~~~~tvsF~lP~~~q~~pP~P~D~~V~i~~~p~~~vaVr~FsG~~~~~~~~~~~~~L~~ 182 (227)
T 4b0y_A 116 EPGSG-------PF------SESTITISLYIPSEQQFDPPRPLESDVFIEDRAEMTVFVRSFDGFSSAQKNQEQLLTLAS 182 (227)
T ss_dssp ECCC---------C------CCEEEEEEEECCGGGSSSCCCBSSSSEEEEEECCEEEEEEEESSCCCHHHHHHHHHHHHH
T ss_pred ecCCC-------cc------cCceEEEEEEcChhhccCCCCCCCCceEEEEeCCEEEEEEEecCcCCHHHHHHHHHHHHH
Confidence 87654 33 367899999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCcceecCCcEEEEEeCCCCCCCCCCeeeEEEEeecc
Q 027241 183 ALKGDRQFRVKEGASVEVAQYNPPFTLPFTRRNEIALEVERK 224 (226)
Q Consensus 183 ~L~~~g~~~~~~~~~~~~A~Yd~P~~~~~~R~NEV~i~v~~~ 224 (226)
+|+++|+. ..++.|++||||+||++ ++|||||||.++..
T Consensus 183 ~L~~~g~~--~~~~~y~~A~Yd~P~t~-~~RrNEVwi~~~~e 221 (227)
T 4b0y_A 183 ILREDGKV--FDEKVYYTAGYNSPVKL-LNRNNEVWLIQKNE 221 (227)
T ss_dssp HHHHHTCC--BCSSCEEEEECC---CC-CSSCEEEEEEBC--
T ss_pred HHHhCCCc--cCCCcEEEEEeCCCCCc-CCceeEEEEEECCC
Confidence 99999974 35677899999999997 99999999998754
No 2
>2gov_A P22HBP, heme-binding protein 1; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; NMR {Mus musculus} SCOP: d.60.1.4 PDB: 4a1m_A 2hva_A
Probab=100.00 E-value=4e-56 Score=374.50 Aligned_cols=178 Identities=28% Similarity=0.391 Sum_probs=160.6
Q ss_pred cCCCCCCCCeEEEEecCC----eEEEEeCCceEEEEEcCCCCccChhhhhHHHHHHHHhhccCCCCCcccCCCCcEEEEE
Q 027241 27 AVPDLETVKFKVLSRRGQ----YEIREVESYFIAETTMPGRTGFDLNGASRSFNVLAEYLFGKNTKRETMEMTTPVITRK 102 (226)
Q Consensus 27 ~~~~~E~P~Y~vl~~~~~----yEiR~Y~~~~wa~t~v~~~~~~~~~a~~~gF~~L~~YI~G~N~~~~ki~MT~PV~~~~ 102 (226)
-|++.|||+|+||++.++ ||||+|++++||+|++.+.+. .+|...||++|++||+|+|.++++|+||+||++++
T Consensus 14 ~~~~~E~P~Y~Vl~~~~~~~~~yEiR~Y~~~~wa~t~~~~~~~--~~A~~~gF~~L~~YI~G~N~~~~kI~MTaPV~~~~ 91 (195)
T 2gov_A 14 LFGSVETWPWQVLSTGGKEDVSYEERACEGGKFATVEVTDKPV--DEALREAMPKIMKYVGGTNDKGVGMGMTVPVSFAV 91 (195)
T ss_dssp CCCSCCSCCCEEEEECCCSSSCEEEEECCCCEEEEEEEESSCH--HHHHHHHHHHHHHHHHTCBTTCCCCCCCCCEEEEE
T ss_pred ccCCCCCCCeEEEEecCCCCCcEEEEEeCCeEEEEEEecCCCh--hHHHHHHHHHHHHHhccCCCCCCCcccccCEEEEE
Confidence 388999999999999887 999999999999999976432 24778899999999999999999999999999998
Q ss_pred ecCCCcccccccccccccccCCCeEEEEEEeecCCCCCCCCCCCCCeEEEEeCCeEEEEEEeCCcCChHHHHHHHHHHHH
Q 027241 103 TQSDGEKMEMTTPVISKKLEDQDKWQMSFVMPSKYGANLPLPKDPSVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKLRD 182 (226)
Q Consensus 103 ~~~~~~~i~mt~pv~~~~~~~~~~~tmsF~lP~~~~~~pP~P~d~~V~i~~~p~~~vav~~F~G~~~~~~~~~~~~~L~~ 182 (226)
.++++ |. |.+.|+|+|+||++||++||+|+|++|+|+++|+++|||++|+|++++.++.+++++|++
T Consensus 92 ~p~~~-------~~------~~~~~tvsF~lP~~~~~~pP~P~d~~V~i~~~p~~~vav~~F~G~~~~~~~~~~~~~L~~ 158 (195)
T 2gov_A 92 FPNED-------GS------LQKKLKVWFRIPNQFQGSPPAPSDESVKIEEREGITVYSTQFGGYAKEADYVAHATQLRT 158 (195)
T ss_dssp EECTT-------SC------EEEEEEEEECCCHHHHHSCCCBCSSSCEEEECCSCEEEEEEEESCCCHHHHHHHHHHHHH
T ss_pred cCCCC-------CC------cCceEEEEEEcchhcccCCCCCCCCceEEEEeCCeEEEEEEECCccCHHHHHHHHHHHHH
Confidence 76543 32 366899999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCcceecCCcEEEEEeCCCCCCCCCCeeeEEEEee
Q 027241 183 ALKGDRQFRVKEGASVEVAQYNPPFTLPFTRRNEIALEVE 222 (226)
Q Consensus 183 ~L~~~g~~~~~~~~~~~~A~Yd~P~~~~~~R~NEV~i~v~ 222 (226)
+|+++|+. ..++.|++|+||+||++ ++|||||||..+
T Consensus 159 ~L~~~g~~--~~~~~~~~a~Yn~P~~~-~~RrNEV~i~~~ 195 (195)
T 2gov_A 159 TLEGTPAT--YQGDVYYCAGYDPPMKP-YGRRNEVWLVKA 195 (195)
T ss_dssp HTTTSSCC--EEEEEEEEEESSCCSSS-SCCEEEEEEEEC
T ss_pred HHHHCCCc--ccCCcEEEEEeCCCCCc-CCceeEEEEEeC
Confidence 99999975 24567899999999998 999999999863
No 3
>3r8j_A Heme-binding protein 2; HEBP family, SOUL protein, apoptosis; 1.60A {Homo sapiens} PDB: 3r8k_A 2yc9_A 4ayz_A 4ayz_B 3r85_E
Probab=100.00 E-value=6.8e-56 Score=377.31 Aligned_cols=179 Identities=26% Similarity=0.385 Sum_probs=160.8
Q ss_pred CCCCCCCCeEEEEe----cCCeEEEEeCCceEEEEEcCCCCccChhhhhHHHHHHHHhhccCCCCCcccCCCCcEEEEEe
Q 027241 28 VPDLETVKFKVLSR----RGQYEIREVESYFIAETTMPGRTGFDLNGASRSFNVLAEYLFGKNTKRETMEMTTPVITRKT 103 (226)
Q Consensus 28 ~~~~E~P~Y~vl~~----~~~yEiR~Y~~~~wa~t~v~~~~~~~~~a~~~gF~~L~~YI~G~N~~~~ki~MT~PV~~~~~ 103 (226)
+.++|||+|+||++ .++||||+|++++||+|++.+.+. .+|...||++|++||+|+|.++.+|+||+||++++.
T Consensus 20 ~~~~E~P~Y~vl~~~~~~~~~yEiR~Y~~~~wast~v~~~~~--~~A~~~gF~~L~~YI~G~N~~~~kI~MTaPV~t~~~ 97 (212)
T 3r8j_A 20 AQAVETPGWKAPEDAGPQPGSYEIRHYGPAKWVSTSVESMDW--DSAIQTGFTKLNSYIQGKNEKEMKIKMTAPVTSYVE 97 (212)
T ss_dssp --CCBCCCEECCSSCCCCCTTCEEEEECCEEEEEEEEEESCH--HHHHHHHHHHHHHHHTTCBTTCCCCCCBSCEEEEEE
T ss_pred cCCCCCCCeEEEEecccCCCCEEEEEcCCceEEEEEEeCCCH--HHHHHHHHHHHHHHhhcCCCCCCccccccCEEEEEe
Confidence 56899999999999 799999999999999999976332 246788999999999999999999999999999988
Q ss_pred cCCCcccccccccccccccCCCeEEEEEEeecCCCCCCCCCCCCCeEEEEeCCeEEEEEEeCCcCChHHHHHHHHHHHHH
Q 027241 104 QSDGEKMEMTTPVISKKLEDQDKWQMSFVMPSKYGANLPLPKDPSVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKLRDA 183 (226)
Q Consensus 104 ~~~~~~i~mt~pv~~~~~~~~~~~tmsF~lP~~~~~~pP~P~d~~V~i~~~p~~~vav~~F~G~~~~~~~~~~~~~L~~~ 183 (226)
++++ |+ |.+.|+|+|+||++||++||+|+|++|+|+++|+++|||++|+|++++.++.+++++|+++
T Consensus 98 p~~~-------~~------~~~~~tvsF~lP~~~q~~pP~P~d~~V~i~~~p~~~vav~~F~G~~~~~~~~~~~~~L~~~ 164 (212)
T 3r8j_A 98 PGSG-------PF------SESTITISLYIPSEQQFDPPRPLESDVFIEDRAEMTVFVRSFDGFSSAQKNQEQLLTLASI 164 (212)
T ss_dssp CTTS-------TT------SCEEEEEEEECCHHHHSSCCCBSSTTEEEEEECCEEEEEEEESSCCCHHHHHHHHHHHHHH
T ss_pred cCCC-------cc------cCceEEEEEEcChHHccCCCCCCCCceEEEEeCCEEEEEEEeCCcCCHHHHHHHHHHHHHH
Confidence 7654 33 3678999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCcceecCCcEEEEEeCCCCCCCCCCeeeEEEEeecc
Q 027241 184 LKGDRQFRVKEGASVEVAQYNPPFTLPFTRRNEIALEVERK 224 (226)
Q Consensus 184 L~~~g~~~~~~~~~~~~A~Yd~P~~~~~~R~NEV~i~v~~~ 224 (226)
|+++|+. ..++.|++|+||+||++ ++|||||||.++..
T Consensus 165 L~~~g~~--~~~~~y~~A~Yd~P~t~-~~RrNEVwi~~~~e 202 (212)
T 3r8j_A 165 LREDGKV--FDEKVYYTAGYNSPVKL-LNRNNEVWLIQKNE 202 (212)
T ss_dssp HHHTTCC--BCSSCEEEEESSSSSCC-SSSCEEEEEEBCC-
T ss_pred HHhCCCc--cCCCcEEEEEeCCCCCc-CCceeEEEEEeCCC
Confidence 9999974 35677899999999997 99999999998854
No 4
>3e0h_A Uncharacterized protein; chlorobium tepidum, structural genomics, PSI-2, protein structure initiative; 1.81A {Chlorobaculum tepidum} PDB: 2kcu_A
Probab=98.32 E-value=3.4e-05 Score=60.34 Aligned_cols=148 Identities=11% Similarity=0.066 Sum_probs=98.4
Q ss_pred CeEEEEeCCceEEEEEcCCCCccChh-hhhHHHHHHHHhhccCCCCCcccCCCCcEEEEEecCCCccccccccccccccc
Q 027241 44 QYEIREVESYFIAETTMPGRTGFDLN-GASRSFNVLAEYLFGKNTKRETMEMTTPVITRKTQSDGEKMEMTTPVISKKLE 122 (226)
Q Consensus 44 ~yEiR~Y~~~~wa~t~v~~~~~~~~~-a~~~gF~~L~~YI~G~N~~~~ki~MT~PV~~~~~~~~~~~i~mt~pv~~~~~~ 122 (226)
+++|+..++...|.....+.. .+.. .....|.+|+.++..+|- ..+.|.+......+.
T Consensus 8 ~v~I~~~p~~~va~ir~~~~~-~~~~~~i~~~~~~l~~~~~~~~l-----~~~g~~~~iy~d~~~--------------- 66 (158)
T 3e0h_A 8 VCELKELAPVPALLIRTQTTM-SELGSLFEAGYHDILQLLAGQGK-----SPSGPPFARYFGMSA--------------- 66 (158)
T ss_dssp CEEEEEECCCEEEEEEEEECH-HHHHHHHHHHHHHHHHHHHHTTC-----CCSSCCEEEEESCTT---------------
T ss_pred ccEEEeeCCceEEEEEeecCH-HHHHHHHHHHHHHHHHHHHHcCC-----CCCCCeEEEEecCCC---------------
Confidence 678999999999888765531 1111 123568999999876552 334554443332110
Q ss_pred CCCeEEEEEEeecCCCCCCCCCCCCCeEEEEeCCeEEEEEEeCCcCChHHHHHHHHHHHHHHhcCCCcceecCCcEEEEE
Q 027241 123 DQDKWQMSFVMPSKYGANLPLPKDPSVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKLRDALKGDRQFRVKEGASVEVAQ 202 (226)
Q Consensus 123 ~~~~~tmsF~lP~~~~~~pP~P~d~~V~i~~~p~~~vav~~F~G~~~~~~~~~~~~~L~~~L~~~g~~~~~~~~~~~~A~ 202 (226)
.+-.+.+++-++... +.+..|.+..+|+.++|+..+.|-..+ +.+.-.+|.+||.++|+. ..+..+-..
T Consensus 67 ~~~~~~~~~~v~~~~------~~~~~~~~~~ip~g~~a~~~~~G~~~~--i~~~~~~l~~wl~~~g~~---~~~~~~E~Y 135 (158)
T 3e0h_A 67 GTFEVEFGFPVEGGV------EGSGRVVTGLTPSGKAASSLYIGPYGE--IEAVYDALMKWVDDNGFD---LSGEAYEIY 135 (158)
T ss_dssp SCEEEEEEEECCSCC------CCBTTBEEEECCCEEEEEEEEESCGGG--THHHHHHHHHHHHHTTCC---EEEEEEEEE
T ss_pred cceEEEEEEEeCCCC------CCCCceEEEEeCCEEEEEEEEEcCccc--HHHHHHHHHHHHHHCCCC---cCCCEEEEE
Confidence 122456666655422 234689999999999999999997653 788888899999999964 224444444
Q ss_pred eCCCCC-CCCCCeeeEEEEeec
Q 027241 203 YNPPFT-LPFTRRNEIALEVER 223 (226)
Q Consensus 203 Yd~P~~-~~~~R~NEV~i~v~~ 223 (226)
+|+|.. .+-..+.||||+|+.
T Consensus 136 ~~~p~~~~~~~~~tei~ipv~~ 157 (158)
T 3e0h_A 136 LDNPAETAPDQLRTRVSLMLHE 157 (158)
T ss_dssp CSCTTSSCGGGCEEEEEEEECC
T ss_pred eCCCCCCCHHHhEEEEEEEEcC
Confidence 577874 345678999999974
No 5
>1jyh_A DNA gyrase inhibitory protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; HET: DNA; 1.80A {Escherichia coli} SCOP: d.60.1.3
Probab=98.32 E-value=1.4e-05 Score=60.64 Aligned_cols=153 Identities=16% Similarity=0.137 Sum_probs=98.5
Q ss_pred CeEEEEeCCceEEEEEcCCCCccChhhhhHHHHHHHHhhccCCCCCcccCCCCcEEEEEecCCCcccccccccccccccC
Q 027241 44 QYEIREVESYFIAETTMPGRTGFDLNGASRSFNVLAEYLFGKNTKRETMEMTTPVITRKTQSDGEKMEMTTPVISKKLED 123 (226)
Q Consensus 44 ~yEiR~Y~~~~wa~t~v~~~~~~~~~a~~~gF~~L~~YI~G~N~~~~ki~MT~PV~~~~~~~~~~~i~mt~pv~~~~~~~ 123 (226)
+++|+..++...+.....+.. + +....+|.+|++++...|-.. .+.+. +.-++ |.... ..
T Consensus 2 ~~~i~~~~~~~v~~~~~~g~~--~-~~i~~~~~~l~~~~~~~~~~~------~~~~g-i~~~~--------~~~~~--~~ 61 (157)
T 1jyh_A 2 NYEIKQEEKRTVAGFHLVGPW--E-QTVKKGFEQLMMWVDSKNIVP------KEWVA-VYYDN--------PDETP--AE 61 (157)
T ss_dssp CCEEEEECCEEEEEEEEESCH--H-HHHHHHHHHHHHHHHHTTCCC------SEEEE-EECSC--------TTTSC--GG
T ss_pred CCEEEEeCCeEEEEEEEECCc--h-hhHHHHHHHHHHHHHHcCCCC------CcEEE-EECCC--------CCCCC--HH
Confidence 478999999998888766521 1 234578999999997665321 14432 22111 11100 01
Q ss_pred CCeEEEEEEeecCCCCCCCCCCCCCeEEEEeCCeEEEEEEeCCcCChHHHHHHHHHHH-HHHhcCCCcceecCCcEEEEE
Q 027241 124 QDKWQMSFVMPSKYGANLPLPKDPSVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKLR-DALKGDRQFRVKEGASVEVAQ 202 (226)
Q Consensus 124 ~~~~tmsF~lP~~~~~~pP~P~d~~V~i~~~p~~~vav~~F~G~~~~~~~~~~~~~L~-~~L~~~g~~~~~~~~~~~~A~ 202 (226)
.-.+.+++.+|.... +| |.++.+.+..+|+.++||..|.|... .+.+.-..|. +||.++|.. ..+.+.+-.
T Consensus 62 ~~~~~~~~~v~~~~~--~~-~~~~~~~~~~ip~g~ya~~~~~G~~~--~~~~~~~~l~~~wl~~~g~~---~~~~~~~E~ 133 (157)
T 1jyh_A 62 KLRCDTVVTVPGYFT--LP-ENSEGVILTEITGGQYAVAVARVVGD--DFAKPWYQFFNSLLQDSAYE---MLPKPCFEV 133 (157)
T ss_dssp GCEEEEEEEECTTCC--CC-SSCTTCEEEEECCEEEEEEEEEECSS--CCHHHHHHHHHHHTTCSSEE---ECSSCEEEE
T ss_pred HheEEEEEEecCccc--cC-CCCCCeEEEEeCCCcEEEEEEEeCHH--HHHHHHHHHHHHhhcccCCc---cCCCceEEE
Confidence 236778888886543 22 45678999999999999999999763 3666677775 999999853 233345667
Q ss_pred eC-CCCCCCCCCeeeEEEEeeccC
Q 027241 203 YN-PPFTLPFTRRNEIALEVERKE 225 (226)
Q Consensus 203 Yd-~P~~~~~~R~NEV~i~v~~~~ 225 (226)
|. .|.. +-..+-||||+|+.+.
T Consensus 134 Y~~~~~~-~~~~~tei~ipi~~~~ 156 (157)
T 1jyh_A 134 YLNNGAE-DGYWDIEMYVAVQPKH 156 (157)
T ss_dssp ECSCHHH-HSSEEEEEEEEEEEC-
T ss_pred ecCCCCC-cccEEEEEEEEeeeCC
Confidence 73 3333 3355679999998654
No 6
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*
Probab=96.67 E-value=0.079 Score=44.83 Aligned_cols=152 Identities=14% Similarity=0.065 Sum_probs=92.8
Q ss_pred cCCeEEEEeCCceEEEEEc-CCCCccChhhh-hHHHHHHHHhhccCCCCCcccCCCCcEEEEEecCCCcccccccccccc
Q 027241 42 RGQYEIREVESYFIAETTM-PGRTGFDLNGA-SRSFNVLAEYLFGKNTKRETMEMTTPVITRKTQSDGEKMEMTTPVISK 119 (226)
Q Consensus 42 ~~~yEiR~Y~~~~wa~t~v-~~~~~~~~~a~-~~gF~~L~~YI~G~N~~~~ki~MT~PV~~~~~~~~~~~i~mt~pv~~~ 119 (226)
..+++|+..++...+.... .+. .... ...|.+|..++...+ +..+.|+.......+ ++..
T Consensus 121 ~~~v~I~~~p~~~v~~~~~~~~~----~~~i~~~~~~~l~~~~~~~~-----l~~~~~~g~~~~~~~-----~~~~---- 182 (278)
T 1r8e_A 121 LGEVFVLDEEEIRIIQTEAEGIG----PENVLNASYSKLKKFIESAD-----GFTNNSYGATFSFQP-----YTSI---- 182 (278)
T ss_dssp TTCCEEEEECCEEEEEEECTTCC----TTTCCGGGGHHHHHHHHHHH-----SSCCCCEEEEECCCC-----CSCG----
T ss_pred CCceEEEEcCCeEEEEeecCCCC----hHhHHHHHHHHHHHHHHHcC-----CcccCceEEEEEhHH-----hhcC----
Confidence 3468899999998887765 221 1223 467899999995543 334557654432211 0000
Q ss_pred cccCCCeE-EEEEEeecCCCCCCCCCCCCCeEEEEeCCeEEEEEEeCCcCChHHHHHHHHHHHHHHhcCCCcceecCCcE
Q 027241 120 KLEDQDKW-QMSFVMPSKYGANLPLPKDPSVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKLRDALKGDRQFRVKEGASV 198 (226)
Q Consensus 120 ~~~~~~~~-tmsF~lP~~~~~~pP~P~d~~V~i~~~p~~~vav~~F~G~~~~~~~~~~~~~L~~~L~~~g~~~~~~~~~~ 198 (226)
.-..+ .+++.++... .|.|.+..|.+..+|+..+++..+.|-. +.+.+....|.+||.++|+. . .+..
T Consensus 183 ---~~~~~~~~~v~v~~~~---~~l~~~~~~~~~~lp~g~ya~~~~~G~y--~~i~~~~~~l~~wl~~~g~~-~--~g~~ 251 (278)
T 1r8e_A 183 ---DEMTYRHIFTPVLTNK---QISSITPDMEITTIPKGRYACIAYNFSP--EHYFLNLQKLIKYIADRQLT-V--VSDV 251 (278)
T ss_dssp ---GGCCCSEEEEECCCCS---CCSSCCTTSEEEEECSEEEEEEEEECCH--HHHHHHHHHHHHHHHHTTCC-E--EEEE
T ss_pred ---CCcceeEEEEEecCcc---ccccccCCceEeecCCceEEEEEEEcch--hhHHHHHHHHHHHHHHcCCc-c--CCCe
Confidence 01112 2444444321 1223456799999999999999999955 45677778888999999964 2 2344
Q ss_pred EEEEeCCCCCC--CCCCeeeEEEEee
Q 027241 199 EVAQYNPPFTL--PFTRRNEIALEVE 222 (226)
Q Consensus 199 ~~A~Yd~P~~~--~~~R~NEV~i~v~ 222 (226)
+--.++.|+.. +-.-.-||||+|+
T Consensus 252 ~E~y~~~~~~~~~~~~~~teI~iPv~ 277 (278)
T 1r8e_A 252 YELIIPIHYSPKKQEEYRVEMKIRIA 277 (278)
T ss_dssp EEEEEESCCCSSSCCCEEEEEEEEEC
T ss_pred EEEEeecccccCChhheEEEEEEEec
Confidence 44445566653 2234579999986
No 7
>3b49_A LIN2189 protein; BIG 860.1, structural genomics, MCSG, SAD, PSI-2, protein ST initiative, midwest center for structural genomics; HET: MSE; 1.60A {Listeria innocua CLIP11262}
Probab=96.32 E-value=0.13 Score=41.96 Aligned_cols=165 Identities=10% Similarity=-0.007 Sum_probs=95.8
Q ss_pred CeEEEEeCCceEEEEEcCCCCccChhhhhHHHHHHHHhh------ccCCCCCcc-cCCCC-cEEEEEecCCCcccccccc
Q 027241 44 QYEIREVESYFIAETTMPGRTGFDLNGASRSFNVLAEYL------FGKNTKRET-MEMTT-PVITRKTQSDGEKMEMTTP 115 (226)
Q Consensus 44 ~yEiR~Y~~~~wa~t~v~~~~~~~~~a~~~gF~~L~~YI------~G~N~~~~k-i~MT~-PV~~~~~~~~~~~i~mt~p 115 (226)
+++|+.-++...+.....+.. .+ .....+|.+|+..+ ..++-.... -..+. |.......++ |
T Consensus 24 ~v~i~~~p~~~v~~i~~~g~~-~~-~~~~~~~~~L~~~~~~ik~~~~~~~~~~g~~~y~v~~~~gi~~~d~--------~ 93 (211)
T 3b49_A 24 KPERIFVPEMNFLMVDGKGDP-DG-EEYQKAVQSLYAIAYTIKMSKMGETRLDGYSDFVVPPLEGFWWSEG--------K 93 (211)
T ss_dssp SCEEEEEEEEEEEEEEEESCT-TS-HHHHHHHHHHHHHHHHHHHGGGSCCTTTTSCCBCCCCCEEEEEESS--------S
T ss_pred CcEEEEECCeeEEEEEeecCC-CH-HHHHHHHHHHHHHHHHHHHHHhcCCCCCCccceeccceeEEeecCC--------c
Confidence 578888888888888766532 11 13457899999887 433321111 11122 3332221111 1
Q ss_pred cccccccCCCeEEEEEEeecCCCC------------CCCCCCCCCeEEEEeCCeEEEEEEeCCcCChHHHHHHHHHHHHH
Q 027241 116 VISKKLEDQDKWQMSFVMPSKYGA------------NLPLPKDPSVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKLRDA 183 (226)
Q Consensus 116 v~~~~~~~~~~~tmsF~lP~~~~~------------~pP~P~d~~V~i~~~p~~~vav~~F~G~~~~~~~~~~~~~L~~~ 183 (226)
...+ ...+-.|.+++-+|..... ..|.+....|.+..+|+..+++..+.|-.. .+.+-...|.+|
T Consensus 94 ~~~~-~~~~~~~~~~i~vp~~v~~~~~~~a~~~~~~~~~~~~~~~v~~~~ip~g~~a~~~h~G~y~--~~~~~~~~l~~w 170 (211)
T 3b49_A 94 FDLK-DRDAWLWTSILRQPDFVTEEVLEWAKEVARKKKPDVDTSRVKLVRFEEGECVQMMHVGPFS--EEVHTVAEMHQF 170 (211)
T ss_dssp CCTT-CGGGEEEEEEEEECTTCCHHHHHHHHHHHHHHCTTSCCTTCEEEEEEEEEEEEEEEESCGG--GHHHHHHHHHHH
T ss_pred cccC-chhheEEEEEEEcCCcccHHHHHHHHHHHhccCCCCCcccceEEEeCCceEEEEEEEcchh--hHHHHHHHHHHH
Confidence 0000 0012367788888864321 023334467999999999999999999765 366777888899
Q ss_pred HhcCCCcceec--CCcEEEEEeCCCCCCC-CCCeeeEEEEee
Q 027241 184 LKGDRQFRVKE--GASVEVAQYNPPFTLP-FTRRNEIALEVE 222 (226)
Q Consensus 184 L~~~g~~~~~~--~~~~~~A~Yd~P~~~~-~~R~NEV~i~v~ 222 (226)
|.++|+.. .. ++..+--.++.|...+ -.-+=||+++|+
T Consensus 171 l~~~g~~~-~~~~~~~~~EiY~~dp~~~~~~~~~tei~ipV~ 211 (211)
T 3b49_A 171 METEGLRN-DTGAIRKHHEIYLSDPRKANPEKMKTILRLPVS 211 (211)
T ss_dssp HHHHTCCB-CBTTTBCEEEEECSCTTTSCGGGCEEEEEEEBC
T ss_pred HHHCCCcc-ccCCCCcEEEEEeCCCCCCChHHeEEEEEEEeC
Confidence 99999721 11 1444444447776432 233568898874
No 8
>3lur_A Putative bacterial transcription regulation prote; structural genomics, joint center for structural genomics; HET: MSE PG4; 1.81A {Staphylococcus aureus}
Probab=92.90 E-value=1 Score=34.58 Aligned_cols=73 Identities=12% Similarity=0.023 Sum_probs=50.8
Q ss_pred CCeEEEEeCCeEEEEEEeCCcCChHHHHHHHHHH-HHHHhcCCCcceecCCcEEEEEeCCCCCCCCCCeeeEEEEeec
Q 027241 147 PSVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKL-RDALKGDRQFRVKEGASVEVAQYNPPFTLPFTRRNEIALEVER 223 (226)
Q Consensus 147 ~~V~i~~~p~~~vav~~F~G~~~~~~~~~~~~~L-~~~L~~~g~~~~~~~~~~~~A~Yd~P~~~~~~R~NEV~i~v~~ 223 (226)
..+....+|+.++||.++.|-..+ .+++--..+ ..||-+.|.. ....+-+-.|+.....+-.-.-||||+|++
T Consensus 85 ~~~~~~~ip~g~Yavf~~~G~~~~-~i~~~~~~i~~~wlp~sgy~---~~~~p~fE~Y~~~~~~~~~~~~ei~iPI~~ 158 (158)
T 3lur_A 85 AKYDVITLASSKYMVFEAQGAVPK-AVQQKMEEVHHYIHQYQANT---VKSAPFFELYQDGDTTSEKYITEIWMPVKG 158 (158)
T ss_dssp GGSEEEEECCEEEEEEEEESSTTH-HHHHHHHHHHHHHHHHCTTT---BCSSCEEEEECSSCTTSTTCEEEEEEEECC
T ss_pred CCcEEEEECCceEEEEEEecChHH-HHHHHHHHHHHhhcccCCCe---eCCCccEEEECCCCCCCcceEEEEEEEEcC
Confidence 468889999999999999996544 455555554 4689988864 233456677866433223456799999974
No 9
>1d5y_A ROB transcription factor; protein-DNA complex, DNA, transcription/DNA complex; HET: DNA; 2.70A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 d.60.1.2
Probab=90.61 E-value=1.1 Score=37.44 Aligned_cols=73 Identities=12% Similarity=0.130 Sum_probs=49.2
Q ss_pred CCeEEEEeCCeEEEEEEeCCcCChHHHHHHHHHHH-HHHhcCCCcceecCCcEEEEEeC----CCCCCC-CCCeeeEEEE
Q 027241 147 PSVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKLR-DALKGDRQFRVKEGASVEVAQYN----PPFTLP-FTRRNEIALE 220 (226)
Q Consensus 147 ~~V~i~~~p~~~vav~~F~G~~~~~~~~~~~~~L~-~~L~~~g~~~~~~~~~~~~A~Yd----~P~~~~-~~R~NEV~i~ 220 (226)
..+....+|+.++||..+.|- .+.+.+-...|. +||.++|... . +.+-+-.|. +|...+ -.-.=||||+
T Consensus 210 ~~~~~~~iP~g~yAvf~~~G~--~~~l~~~~~~i~~~Wlp~sgy~~--~-~~p~~E~Y~~~~~~~~~~~~~~~~tEI~iP 284 (292)
T 1d5y_A 210 LTGHPVMLQGGEYVMFTYEGL--GTGVQEFILTVYGTCMPMLNLTR--R-KGQDIERYYPAEDAKAGDRPINLRCELLIP 284 (292)
T ss_dssp TTCEEEEECCEEEEEEEEEEE--GGGHHHHHHHHHHTHHHHTTCEE--C-SSCEEEEECGGGC----CCSCEEEEEEEEE
T ss_pred CcceEEEECCCcEEEEEecCC--HHHHHHHHHHHHHHhcccCCCcc--C-CCCcEEEEeeccccCCCCCCCceEEEEEEE
Confidence 468889999999999999994 556777888885 9999999631 2 233455564 333221 1123499999
Q ss_pred eecc
Q 027241 221 VERK 224 (226)
Q Consensus 221 v~~~ 224 (226)
|+.+
T Consensus 285 I~~k 288 (292)
T 1d5y_A 285 IRRK 288 (292)
T ss_dssp EECC
T ss_pred eehh
Confidence 9864
No 10
>3gk6_A Integron cassette protein VCH_CASS2; novel, oyster PO HOLE, USA, structural genomics, PSI-2; HET: MSE PE4; 1.80A {Vibrio cholerae}
Probab=86.92 E-value=9.4 Score=29.73 Aligned_cols=66 Identities=11% Similarity=0.088 Sum_probs=46.9
Q ss_pred CCeEEEEeCCeEEEEEEeCCcCChHHHHHHHHHHHHHHhcCC--CcceecCCcEEEEEeCCCCCCCCCCeeeEEEEee
Q 027241 147 PSVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKLRDALKGDR--QFRVKEGASVEVAQYNPPFTLPFTRRNEIALEVE 222 (226)
Q Consensus 147 ~~V~i~~~p~~~vav~~F~G~~~~~~~~~~~~~L~~~L~~~g--~~~~~~~~~~~~A~Yd~P~~~~~~R~NEV~i~v~ 222 (226)
..+....+|+.++||-++.|-.. +.+++--..+..||-..| .. ....+-+-.|+... .-||||+|+
T Consensus 103 ~g~~~~~IP~g~YAVF~~~G~~p-~~i~~~w~~I~~WlP~sg~~y~---~~~~pdfE~Y~~~~------~~eI~IpI~ 170 (170)
T 3gk6_A 103 SESVKTKVSSGKYVTFSATGEMP-QVVIDLWNEVWNYFASEHCPHK---RAYTTDFEYYKSAN------TVEISIAVR 170 (170)
T ss_dssp TTCEEEEECCEEEEEEEEESSTT-HHHHHHHHHHHHHHC---CCCC---BCCSEEEEECCSSS------EEEEEEEBC
T ss_pred CCcEEEEECCCCEEEEEecCCCH-HHHHHHHHHHHHhhhhcCCcce---ecCcCCEEEECCCC------eEEEEEEEC
Confidence 57888999999999999999543 466676777777999988 53 23456677786531 679999985
No 11
>3e0h_A Uncharacterized protein; chlorobium tepidum, structural genomics, PSI-2, protein structure initiative; 1.81A {Chlorobaculum tepidum} PDB: 2kcu_A
Probab=82.68 E-value=7.6 Score=29.16 Aligned_cols=70 Identities=11% Similarity=0.082 Sum_probs=47.2
Q ss_pred CeEEEEeCCeEEEEEEeCCcCCh--HHHHHHHHHHHHHHhcCCCcceecCCcEEEEEeCCCCCCCCCCeeeEEEEeec
Q 027241 148 SVRIKEVPKKVVAVVAFSGFVTD--EDVKRRELKLRDALKGDRQFRVKEGASVEVAQYNPPFTLPFTRRNEIALEVER 223 (226)
Q Consensus 148 ~V~i~~~p~~~vav~~F~G~~~~--~~~~~~~~~L~~~L~~~g~~~~~~~~~~~~A~Yd~P~~~~~~R~NEV~i~v~~ 223 (226)
+|.|++.|+.+|+.++..|...+ ..+.+.-.+|.+++..+|+. ..+..+..-|| +.. -.=+=|+.+++..
T Consensus 8 ~v~I~~~p~~~va~ir~~~~~~~~~~~i~~~~~~l~~~~~~~~l~---~~g~~~~iy~d--~~~-~~~~~~~~~~v~~ 79 (158)
T 3e0h_A 8 VCELKELAPVPALLIRTQTTMSELGSLFEAGYHDILQLLAGQGKS---PSGPPFARYFG--MSA-GTFEVEFGFPVEG 79 (158)
T ss_dssp CEEEEEECCCEEEEEEEEECHHHHHHHHHHHHHHHHHHHHHTTCC---CSSCCEEEEES--CTT-SCEEEEEEEECCS
T ss_pred ccEEEeeCCceEEEEEeecCHHHHHHHHHHHHHHHHHHHHHcCCC---CCCCeEEEEec--CCC-cceEEEEEEEeCC
Confidence 68999999999999999987422 23446667899999999863 33444444455 222 2345677777653
No 12
>3b49_A LIN2189 protein; BIG 860.1, structural genomics, MCSG, SAD, PSI-2, protein ST initiative, midwest center for structural genomics; HET: MSE; 1.60A {Listeria innocua CLIP11262}
Probab=72.31 E-value=21 Score=28.51 Aligned_cols=43 Identities=16% Similarity=0.021 Sum_probs=37.1
Q ss_pred CCeEEEEeCCeEEEEEEeCCcCChHHHHHHHHHHHHHH------hcCCC
Q 027241 147 PSVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKLRDAL------KGDRQ 189 (226)
Q Consensus 147 ~~V~i~~~p~~~vav~~F~G~~~~~~~~~~~~~L~~~L------~~~g~ 189 (226)
-+|.|.++|++.++.++..|-+.+..+.+...+|..++ .++|+
T Consensus 23 ~~v~i~~~p~~~v~~i~~~g~~~~~~~~~~~~~L~~~~~~ik~~~~~~~ 71 (211)
T 3b49_A 23 RKPERIFVPEMNFLMVDGKGDPDGEEYQKAVQSLYAIAYTIKMSKMGET 71 (211)
T ss_dssp SSCEEEEEEEEEEEEEEEESCTTSHHHHHHHHHHHHHHHHHHHGGGSCC
T ss_pred CCcEEEEECCeeEEEEEeecCCCHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 46899999999999999888766557889999999999 88886
No 13
>1jyh_A DNA gyrase inhibitory protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; HET: DNA; 1.80A {Escherichia coli} SCOP: d.60.1.3
Probab=67.95 E-value=20 Score=25.70 Aligned_cols=70 Identities=20% Similarity=0.160 Sum_probs=46.4
Q ss_pred CeEEEEeCCeEEEEEEeCCcCChHHHHHHHHHHHHHHhcCCCcceecCCcEEEEEeCCCCCCC-CCCeeeEEEEee
Q 027241 148 SVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKLRDALKGDRQFRVKEGASVEVAQYNPPFTLP-FTRRNEIALEVE 222 (226)
Q Consensus 148 ~V~i~~~p~~~vav~~F~G~~~~~~~~~~~~~L~~~L~~~g~~~~~~~~~~~~A~Yd~P~~~~-~~R~NEV~i~v~ 222 (226)
+|.|++.|+..++..+..|-.. +.+.+...+|.+++..+|+. . ...+...+|.|...+ -.=+-++.+.+.
T Consensus 2 ~~~i~~~~~~~v~~~~~~g~~~-~~i~~~~~~l~~~~~~~~~~---~-~~~~gi~~~~~~~~~~~~~~~~~~~~v~ 72 (157)
T 1jyh_A 2 NYEIKQEEKRTVAGFHLVGPWE-QTVKKGFEQLMMWVDSKNIV---P-KEWVAVYYDNPDETPAEKLRCDTVVTVP 72 (157)
T ss_dssp CCEEEEECCEEEEEEEEESCHH-HHHHHHHHHHHHHHHHTTCC---C-SEEEEEECSCTTTSCGGGCEEEEEEEEC
T ss_pred CCEEEEeCCeEEEEEEEECCch-hhHHHHHHHHHHHHHHcCCC---C-CcEEEEECCCCCCCCHHHheEEEEEEec
Confidence 4789999999999888887542 45677778899999888853 2 234445567776321 122345666664
No 14
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*
Probab=55.27 E-value=18 Score=29.98 Aligned_cols=73 Identities=15% Similarity=-0.000 Sum_probs=45.6
Q ss_pred CCCeEEEEeCCeEEEEEEe-CCcCChHHH-HHHHHHHHHHHhcCCCcceecCCcEEEEEeCCCCCCCCCCee-eEEEEee
Q 027241 146 DPSVRIKEVPKKVVAVVAF-SGFVTDEDV-KRRELKLRDALKGDRQFRVKEGASVEVAQYNPPFTLPFTRRN-EIALEVE 222 (226)
Q Consensus 146 d~~V~i~~~p~~~vav~~F-~G~~~~~~~-~~~~~~L~~~L~~~g~~~~~~~~~~~~A~Yd~P~~~~~~R~N-EV~i~v~ 222 (226)
...|.|.+.|+..++..+. .|.. ..+ .+...+|.+++.+.|+. ..+.+.+.-+|++++..-.+.. ++.+++.
T Consensus 121 ~~~v~I~~~p~~~v~~~~~~~~~~--~~i~~~~~~~l~~~~~~~~l~---~~~~~g~~~~~~~~~~~~~~~~~~~~v~v~ 195 (278)
T 1r8e_A 121 LGEVFVLDEEEIRIIQTEAEGIGP--ENVLNASYSKLKKFIESADGF---TNNSYGATFSFQPYTSIDEMTYRHIFTPVL 195 (278)
T ss_dssp TTCCEEEEECCEEEEEEECTTCCT--TTCCGGGGHHHHHHHHHHHSS---CCCCEEEEECCCCCSCGGGCCCSEEEEECC
T ss_pred CCceEEEEcCCeEEEEeecCCCCh--HhHHHHHHHHHHHHHHHcCCc---ccCceEEEEEhHHhhcCCCcceeEEEEEec
Confidence 3579999999999998887 5533 222 34456688888887753 2344444444555654222333 6788775
Q ss_pred c
Q 027241 223 R 223 (226)
Q Consensus 223 ~ 223 (226)
.
T Consensus 196 ~ 196 (278)
T 1r8e_A 196 T 196 (278)
T ss_dssp C
T ss_pred C
Confidence 4
No 15
>2dix_A Interferon-inducible double stranded RNA- dependent protein kinase activator A; structure genomics, DSRM domain, hypothetical protein PRKRA; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=46.17 E-value=50 Score=22.67 Aligned_cols=63 Identities=16% Similarity=0.125 Sum_probs=37.0
Q ss_pred HHHHHhcCCCCCCCCeEEEEec-----CCeEEEEeCCceEEEEEcCCCCccCh--hhhhHHHHHHHHhhccCCC
Q 027241 21 LEEALMAVPDLETVKFKVLSRR-----GQYEIREVESYFIAETTMPGRTGFDL--NGASRSFNVLAEYLFGKNT 87 (226)
Q Consensus 21 ~~~~~~~~~~~E~P~Y~vl~~~-----~~yEiR~Y~~~~wa~t~v~~~~~~~~--~a~~~gF~~L~~YI~G~N~ 87 (226)
|.|.+.... ..|.|+++... ..|.++-+=...+. .-.|.+-... .|+..++..|.....|.++
T Consensus 14 LqE~~q~~~--~~p~Y~~~~~~Gp~h~~~F~~~v~v~~~~~--~G~G~SKK~Aeq~AA~~aL~~L~~~~~g~s~ 83 (84)
T 2dix_A 14 LHEYGMKTK--NIPVYECERSDVQIHVPTFTFRVTVGDITC--TGEGTSKKLAKHRAAEAAINILKANASGPSS 83 (84)
T ss_dssp HHHHHHHTT--CCCEEEEEEEECSSSSCEEEEEEEETTEEE--EECSSCTTHHHHHHHHHHHHHHHHTCCCCCC
T ss_pred HHHHHHHcC--CCCeEEEEEeECCCCCCeEEEEEEECCEEE--EeeeCCHHHHHHHHHHHHHHHHhccccCCCC
Confidence 455555554 47999998753 23666665444333 3334332211 2556789999888888654
No 16
>2q3l_A Uncharacterized protein; SPOIIAA-like fold, structural genomics, joint center for STR genomics, JCSG, protein structure initiative; HET: MSE; 2.25A {Shewanella loihica pv-4} SCOP: c.13.2.2
Probab=31.11 E-value=79 Score=23.20 Aligned_cols=42 Identities=21% Similarity=0.248 Sum_probs=36.3
Q ss_pred CeEEEEeCCeEEEEEEeCCcCChHHHHHHHHHHHHHHhcCCC
Q 027241 148 SVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKLRDALKGDRQ 189 (226)
Q Consensus 148 ~V~i~~~p~~~vav~~F~G~~~~~~~~~~~~~L~~~L~~~g~ 189 (226)
.+.|....+..+.+.+.+|..+.+++++-...|.+.|++.+.
T Consensus 10 mi~i~~~~~~~vl~v~~~G~lt~~d~~~l~~~l~~~l~~~~~ 51 (126)
T 2q3l_A 10 AIGIERSQDDFYLAFKAVGKLTHEDYEQMTPLLESALAGIKT 51 (126)
T ss_dssp EEEEEEETTEEEEEEEEEEEECHHHHHHHHHHHHHHTTTCCS
T ss_pred eEEEEEcCCCCEEEEEEEeeECHHHHHHHHHHHHHHHHhCCC
Confidence 467778888889999999999999999988888888888775
No 17
>1d5y_A ROB transcription factor; protein-DNA complex, DNA, transcription/DNA complex; HET: DNA; 2.70A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 d.60.1.2
Probab=30.37 E-value=1e+02 Score=25.08 Aligned_cols=58 Identities=10% Similarity=0.039 Sum_probs=37.2
Q ss_pred CCeEEEEeCCeEEEEEEeCCcCChHHHH----HHHHHHHHHHhcCCCcceecCCcEEEEEeCCCC
Q 027241 147 PSVRIKEVPKKVVAVVAFSGFVTDEDVK----RRELKLRDALKGDRQFRVKEGASVEVAQYNPPF 207 (226)
Q Consensus 147 ~~V~i~~~p~~~vav~~F~G~~~~~~~~----~~~~~L~~~L~~~g~~~~~~~~~~~~A~Yd~P~ 207 (226)
.+|.|.+.|+..|+.++..|....+.+. .....|.+.|...+.. ..+..+...||.|-
T Consensus 124 m~~~I~~~~~~~v~gi~~~~~~~~~~~~~~~~~~i~~lw~~~~~~~~~---~~~~~~gi~~d~~~ 185 (292)
T 1d5y_A 124 PEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPT---IPPVLYGLNETRPS 185 (292)
T ss_dssp CCEEEEEECCEEEEEEEEECCCCGGGHHHHHHHHHHHHHHHHHHHCSS---CCSCEEEEEEEEEC
T ss_pred CCceEEEeCCeEEeeEEeeeccccccccccchhhhHHHHHHHhcccCC---CCCCEEEEEecCCC
Confidence 4699999999999999998866543332 4455566666554321 22345556667664
No 18
>2ook_A Hypothetical protein; structural genomics, JOIN for structural genomics, JCSG, protein structure initiative unknown function; HET: MSE; 1.80A {Shewanella frigidimarina} SCOP: c.13.2.2
Probab=28.56 E-value=1.3e+02 Score=22.02 Aligned_cols=42 Identities=21% Similarity=0.205 Sum_probs=35.9
Q ss_pred CeEEEEeCCeEEEEEEeCCcCChHHHHHHHHHHHHHHhc--CCC
Q 027241 148 SVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKLRDALKG--DRQ 189 (226)
Q Consensus 148 ~V~i~~~p~~~vav~~F~G~~~~~~~~~~~~~L~~~L~~--~g~ 189 (226)
.|.|....+..+.+.+.+|..+.+++++-...|.+.|++ .+.
T Consensus 10 mi~i~~~~~~~vl~v~~~G~lt~eD~~~l~~~i~~~l~~~~~~~ 53 (127)
T 2ook_A 10 SIGINRIESVFFVTLKAIGTLTHEDYLVITPMLEGALSQVDQPK 53 (127)
T ss_dssp EEEEEEETTEEEEEEEEEEEECHHHHHHHHHHHHHHHTTCCCSS
T ss_pred eEEEEEcCCCCEEEEEEeeeECHHHHHHHHHHHHHHHhhccCCC
Confidence 466777778888899999999999999888888889998 664
Done!