Query 027245
Match_columns 226
No_of_seqs 218 out of 1228
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 07:05:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027245.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027245hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd02970 PRX_like2 Peroxiredoxi 99.9 2.5E-25 5.5E-30 176.7 13.0 140 74-220 1-142 (149)
2 COG1225 Bcp Peroxiredoxin [Pos 99.9 5.7E-24 1.2E-28 174.9 12.3 106 68-174 3-108 (157)
3 PF00578 AhpC-TSA: AhpC/TSA fa 99.9 3E-21 6.5E-26 149.0 12.2 102 71-173 1-102 (124)
4 cd03013 PRX5_like Peroxiredoxi 99.8 4.3E-21 9.3E-26 157.1 10.5 104 71-174 1-111 (155)
5 cd03018 PRX_AhpE_like Peroxire 99.8 1.6E-20 3.4E-25 149.9 11.7 104 70-173 2-107 (149)
6 KOG4498 Uncharacterized conser 99.8 5.5E-21 1.2E-25 159.9 7.4 167 48-223 7-176 (197)
7 cd03016 PRX_1cys Peroxiredoxin 99.8 9.1E-20 2E-24 155.2 11.1 102 71-173 1-108 (203)
8 PRK09437 bcp thioredoxin-depen 99.8 2E-19 4.4E-24 145.2 12.2 106 67-173 2-107 (154)
9 TIGR03137 AhpC peroxiredoxin. 99.8 1.2E-19 2.7E-24 152.5 10.8 102 70-172 3-111 (187)
10 cd03017 PRX_BCP Peroxiredoxin 99.8 1.9E-19 4.2E-24 142.0 10.9 101 73-174 1-101 (140)
11 PRK13599 putative peroxiredoxi 99.8 1.8E-19 3.8E-24 155.3 11.2 102 70-172 3-110 (215)
12 PF08534 Redoxin: Redoxin; In 99.8 4.1E-19 8.9E-24 141.7 12.2 101 70-172 1-104 (146)
13 PRK13190 putative peroxiredoxi 99.8 2.5E-19 5.4E-24 152.6 11.6 102 69-172 2-109 (202)
14 PRK13191 putative peroxiredoxi 99.8 3.1E-19 6.7E-24 153.8 11.7 103 69-172 7-115 (215)
15 PTZ00137 2-Cys peroxiredoxin; 99.8 3.3E-19 7.1E-24 157.8 11.9 109 65-173 64-182 (261)
16 PRK13189 peroxiredoxin; Provis 99.8 3.9E-19 8.5E-24 153.8 12.1 104 68-172 8-117 (222)
17 cd02971 PRX_family Peroxiredox 99.8 9.2E-19 2E-23 137.9 11.5 101 74-175 1-102 (140)
18 cd03015 PRX_Typ2cys Peroxiredo 99.8 1.3E-18 2.8E-23 143.9 11.8 101 71-172 1-112 (173)
19 PRK10382 alkyl hydroperoxide r 99.8 1.9E-18 4E-23 146.1 11.7 103 69-172 2-111 (187)
20 PRK00522 tpx lipid hydroperoxi 99.8 2.3E-18 4.9E-23 142.3 11.5 102 69-174 18-122 (167)
21 KOG0855 Alkyl hydroperoxide re 99.8 5E-19 1.1E-23 146.1 7.4 111 68-178 62-172 (211)
22 cd03014 PRX_Atyp2cys Peroxired 99.8 2.3E-18 4.9E-23 137.1 11.0 100 71-173 2-103 (143)
23 PTZ00056 glutathione peroxidas 99.8 4.4E-18 9.5E-23 144.8 10.6 89 70-160 14-110 (199)
24 PRK15000 peroxidase; Provision 99.8 7.3E-18 1.6E-22 143.6 11.5 103 70-172 3-117 (200)
25 cd00340 GSH_Peroxidase Glutath 99.7 3.1E-18 6.6E-23 138.9 7.1 84 75-161 2-94 (152)
26 cd02969 PRX_like1 Peroxiredoxi 99.7 2.6E-17 5.7E-22 135.4 11.2 105 72-177 1-113 (171)
27 PTZ00256 glutathione peroxidas 99.7 1.6E-17 3.5E-22 139.1 9.5 89 71-160 16-113 (183)
28 PTZ00253 tryparedoxin peroxida 99.7 5.3E-17 1.2E-21 137.6 10.7 104 68-172 5-119 (199)
29 PLN02399 phospholipid hydroper 99.7 1.2E-16 2.6E-21 139.6 12.2 89 70-160 74-171 (236)
30 PRK03147 thiol-disulfide oxido 99.7 1.8E-16 3.8E-21 129.5 12.4 108 67-176 33-141 (173)
31 PLN02412 probable glutathione 99.7 5.4E-17 1.2E-21 134.2 8.5 87 72-160 6-101 (167)
32 TIGR02661 MauD methylamine deh 99.7 2.9E-16 6.2E-21 132.3 13.1 104 68-175 45-148 (189)
33 PF13911 AhpC-TSA_2: AhpC/TSA 99.7 2E-16 4.4E-21 122.5 10.4 102 119-220 2-107 (115)
34 cd03012 TlpA_like_DipZ_like Tl 99.7 1.3E-16 2.8E-21 125.1 8.5 90 85-176 13-108 (126)
35 TIGR02540 gpx7 putative glutat 99.7 7E-17 1.5E-21 130.9 7.0 84 75-160 2-94 (153)
36 cd02968 SCO SCO (an acronym fo 99.7 2.9E-16 6.3E-21 124.1 9.6 99 74-174 1-110 (142)
37 PRK15412 thiol:disulfide inter 99.7 5.6E-16 1.2E-20 129.9 11.1 103 68-175 38-144 (185)
38 TIGR00385 dsbE periplasmic pro 99.6 1.1E-15 2.3E-20 126.7 11.0 106 65-175 30-139 (173)
39 cd02967 mauD Methylamine utili 99.6 3.4E-15 7.4E-20 113.9 11.5 96 76-175 1-97 (114)
40 COG0450 AhpC Peroxiredoxin [Po 99.6 2.4E-15 5.2E-20 127.1 10.1 104 69-173 3-117 (194)
41 cd03010 TlpA_like_DsbE TlpA-li 99.6 3.4E-15 7.3E-20 116.6 10.3 98 73-175 1-102 (127)
42 cd02966 TlpA_like_family TlpA- 99.6 8.7E-15 1.9E-19 108.7 10.5 99 77-177 1-101 (116)
43 cd03011 TlpA_like_ScsD_MtbDsbE 99.6 2.7E-14 5.8E-19 110.4 9.7 97 76-179 1-99 (123)
44 PRK10606 btuE putative glutath 99.5 1.9E-14 4.1E-19 121.4 8.8 95 73-170 3-112 (183)
45 PRK14018 trifunctional thiored 99.5 3.1E-13 6.8E-18 129.7 12.6 105 69-177 32-143 (521)
46 cd03009 TryX_like_TryX_NRX Try 99.4 2.2E-13 4.9E-18 106.9 6.9 97 80-179 3-105 (131)
47 cd03008 TryX_like_RdCVF Trypar 99.4 6.2E-13 1.3E-17 108.5 8.6 89 87-177 17-116 (146)
48 PLN02919 haloacid dehalogenase 99.4 6.3E-13 1.4E-17 137.0 10.5 110 66-177 388-506 (1057)
49 cd02964 TryX_like_family Trypa 99.4 3.9E-12 8.6E-17 100.5 9.2 95 80-178 3-104 (132)
50 PRK13728 conjugal transfer pro 99.3 8.2E-12 1.8E-16 105.3 9.3 90 70-179 50-141 (181)
51 TIGR01626 ytfJ_HI0045 conserve 99.3 5.3E-12 1.1E-16 106.7 7.3 106 66-177 20-149 (184)
52 KOG0854 Alkyl hydroperoxide re 99.3 1.1E-11 2.3E-16 103.7 8.5 106 66-172 3-117 (224)
53 PF13905 Thioredoxin_8: Thiore 99.1 5.3E-10 1.2E-14 82.7 9.3 82 97-178 1-87 (95)
54 KOG0852 Alkyl hydroperoxide re 98.9 7.1E-09 1.5E-13 86.6 9.5 103 70-173 5-117 (196)
55 KOG0541 Alkyl hydroperoxide re 98.9 2.9E-09 6.2E-14 87.4 6.5 111 65-175 5-126 (171)
56 COG2077 Tpx Peroxiredoxin [Pos 98.8 2.2E-08 4.7E-13 81.9 9.5 103 68-173 17-121 (158)
57 TIGR02738 TrbB type-F conjugat 98.8 1.3E-08 2.8E-13 83.6 7.1 48 85-141 44-91 (153)
58 COG0678 AHP1 Peroxiredoxin [Po 98.8 9.9E-09 2.2E-13 83.8 6.3 107 69-175 3-120 (165)
59 PF02630 SCO1-SenC: SCO1/SenC; 98.7 2.5E-07 5.5E-12 77.1 10.5 86 71-158 28-120 (174)
60 cd02950 TxlA TRX-like protein 98.6 2.3E-08 4.9E-13 80.7 3.7 85 79-165 2-89 (142)
61 cd02985 TRX_CDSP32 TRX family, 98.6 2.4E-07 5.3E-12 70.3 7.8 56 97-154 15-70 (103)
62 KOG2501 Thioredoxin, nucleored 98.5 2.1E-07 4.5E-12 76.7 5.5 102 77-179 14-121 (157)
63 PF00255 GSHPx: Glutathione pe 98.5 1.1E-06 2.4E-11 68.4 8.8 80 77-159 3-91 (108)
64 PF05988 DUF899: Bacterial pro 98.5 7E-07 1.5E-11 76.8 8.3 98 73-171 44-147 (211)
65 cd02948 TRX_NDPK TRX domain, T 98.4 5.8E-07 1.3E-11 68.0 5.6 54 94-147 14-67 (102)
66 COG0386 BtuE Glutathione perox 98.3 2.8E-06 6.1E-11 69.8 7.6 83 74-159 4-95 (162)
67 TIGR02740 TraF-like TraF-like 98.3 4.8E-07 1E-11 80.7 3.2 78 85-177 156-233 (271)
68 cd02999 PDI_a_ERp44_like PDIa 98.2 2.7E-06 5.8E-11 64.5 6.0 42 96-139 17-58 (100)
69 cd02963 TRX_DnaJ TRX domain, D 98.1 1.3E-05 2.9E-10 61.6 7.9 47 96-142 23-69 (111)
70 cd02951 SoxW SoxW family; SoxW 98.1 4.2E-06 9.2E-11 65.1 4.9 67 95-162 11-94 (125)
71 cd02993 PDI_a_APS_reductase PD 98.1 1.1E-05 2.5E-10 61.5 6.9 44 97-140 21-64 (109)
72 COG1999 Uncharacterized protei 98.1 2.9E-05 6.4E-10 66.7 9.8 95 77-173 49-155 (207)
73 cd02956 ybbN ybbN protein fami 98.1 1E-05 2.2E-10 59.6 6.0 63 97-160 12-74 (96)
74 cd02953 DsbDgamma DsbD gamma f 98.0 1.1E-05 2.3E-10 60.7 5.7 69 95-164 9-85 (104)
75 cd03000 PDI_a_TMX3 PDIa family 98.0 2.6E-05 5.6E-10 58.8 7.1 45 97-141 15-61 (104)
76 cd02959 ERp19 Endoplasmic reti 98.0 1.3E-05 2.9E-10 62.6 5.5 71 96-167 18-91 (117)
77 cd03005 PDI_a_ERp46 PDIa famil 98.0 8.1E-06 1.8E-10 60.4 4.0 47 95-142 15-63 (102)
78 cd03003 PDI_a_ERdj5_N PDIa fam 97.9 1.7E-05 3.8E-10 59.2 5.3 56 94-153 15-70 (101)
79 PRK10996 thioredoxin 2; Provis 97.9 5.1E-06 1.1E-10 66.7 2.1 71 89-160 44-114 (139)
80 cd03002 PDI_a_MPD1_like PDI fa 97.9 4.5E-05 9.8E-10 57.3 7.1 66 96-163 17-85 (109)
81 cd02949 TRX_NTR TRX domain, no 97.9 4.1E-05 8.8E-10 57.1 6.6 65 95-160 11-75 (97)
82 cd02997 PDI_a_PDIR PDIa family 97.9 1.2E-05 2.6E-10 59.6 3.4 73 91-164 11-86 (104)
83 COG4312 Uncharacterized protei 97.9 3.8E-05 8.3E-10 66.5 6.6 92 80-171 56-153 (247)
84 cd03004 PDI_a_ERdj5_C PDIa fam 97.9 6.9E-05 1.5E-09 56.1 7.4 62 97-162 19-83 (104)
85 cd02998 PDI_a_ERp38 PDIa famil 97.8 4.1E-05 8.9E-10 56.6 5.7 64 97-162 18-85 (105)
86 cd03006 PDI_a_EFP1_N PDIa fami 97.8 0.00011 2.4E-09 57.3 8.3 49 95-144 27-75 (113)
87 cd02994 PDI_a_TMX PDIa family, 97.8 4.9E-05 1.1E-09 56.6 5.9 51 100-153 19-69 (101)
88 cd02996 PDI_a_ERp44 PDIa famil 97.8 4.9E-05 1.1E-09 57.6 5.9 50 92-141 13-67 (108)
89 cd02962 TMX2 TMX2 family; comp 97.8 8.2E-05 1.8E-09 61.1 7.4 47 97-143 47-93 (152)
90 PRK09381 trxA thioredoxin; Pro 97.8 3.9E-05 8.4E-10 58.0 5.1 48 96-144 20-67 (109)
91 TIGR01126 pdi_dom protein disu 97.8 3.4E-05 7.3E-10 56.8 4.7 69 93-164 9-81 (102)
92 KOG1651 Glutathione peroxidase 97.8 5.5E-05 1.2E-09 62.9 6.4 98 72-171 11-123 (171)
93 PTZ00051 thioredoxin; Provisio 97.8 1.9E-05 4.1E-10 58.4 3.2 47 93-141 14-60 (98)
94 cd02995 PDI_a_PDI_a'_C PDIa fa 97.8 0.0001 2.3E-09 54.4 7.1 46 97-142 18-64 (104)
95 cd03001 PDI_a_P5 PDIa family, 97.7 0.00019 4.1E-09 53.1 7.5 66 96-162 17-82 (103)
96 cd02954 DIM1 Dim1 family; Dim1 97.7 0.00016 3.4E-09 56.9 7.3 76 97-173 14-89 (114)
97 cd02961 PDI_a_family Protein D 97.7 9.5E-05 2.1E-09 53.4 5.7 69 92-163 10-82 (101)
98 cd02992 PDI_a_QSOX PDIa family 97.6 0.00028 6E-09 54.6 7.9 57 97-154 19-77 (114)
99 TIGR01295 PedC_BrcD bacterioci 97.6 6.3E-05 1.4E-09 59.3 4.3 60 92-154 18-85 (122)
100 cd02984 TRX_PICOT TRX domain, 97.6 8.2E-05 1.8E-09 54.7 4.7 44 97-141 14-57 (97)
101 PF00837 T4_deiodinase: Iodoth 97.6 0.0002 4.4E-09 62.8 7.6 109 68-177 72-206 (237)
102 PF00085 Thioredoxin: Thioredo 97.6 0.00036 7.7E-09 51.2 7.8 62 97-162 17-81 (103)
103 cd02947 TRX_family TRX family; 97.6 0.00018 3.9E-09 50.7 5.8 45 95-141 8-52 (93)
104 TIGR01068 thioredoxin thioredo 97.6 0.00016 3.4E-09 52.8 5.5 45 97-142 14-58 (101)
105 cd02986 DLP Dim1 family, Dim1- 97.5 0.00031 6.7E-09 55.2 6.7 54 96-153 13-66 (114)
106 cd02952 TRP14_like Human TRX-r 97.5 0.0003 6.6E-09 55.5 6.2 44 97-141 21-71 (119)
107 COG0526 TrxA Thiol-disulfide i 97.4 0.00094 2E-08 47.9 7.6 66 97-163 32-101 (127)
108 KOG0907 Thioredoxin [Posttrans 97.4 0.00033 7.1E-09 54.2 5.2 52 97-153 21-72 (106)
109 PF13098 Thioredoxin_2: Thiore 97.4 0.00021 4.5E-09 54.0 4.0 82 96-179 4-88 (112)
110 PLN00410 U5 snRNP protein, DIM 97.4 0.00074 1.6E-08 55.0 7.4 101 96-200 22-128 (142)
111 KOG2792 Putative cytochrome C 97.4 0.00072 1.6E-08 60.0 7.7 75 76-152 120-202 (280)
112 PHA02278 thioredoxin-like prot 97.3 0.00046 9.9E-09 52.9 5.5 45 95-140 12-56 (103)
113 cd02975 PfPDO_like_N Pyrococcu 97.2 0.0014 3.1E-08 50.6 7.0 61 96-161 21-84 (113)
114 PF13899 Thioredoxin_7: Thiore 97.2 0.0032 6.9E-08 45.5 8.1 64 97-161 17-82 (82)
115 TIGR01130 ER_PDI_fam protein d 97.1 0.00071 1.5E-08 62.8 5.6 60 92-154 13-74 (462)
116 cd01659 TRX_superfamily Thiore 97.1 0.0015 3.2E-08 41.7 5.6 45 101-147 1-45 (69)
117 PTZ00443 Thioredoxin domain-co 97.1 0.0015 3.3E-08 56.9 6.8 59 98-160 53-114 (224)
118 TIGR00424 APS_reduc 5'-adenyly 97.0 0.0022 4.8E-08 61.5 7.8 46 96-141 370-415 (463)
119 cd02989 Phd_like_TxnDC9 Phosdu 97.0 0.0018 3.9E-08 50.1 5.5 68 96-165 21-88 (113)
120 cd02957 Phd_like Phosducin (Ph 96.9 0.0032 7E-08 48.2 6.6 50 98-153 25-74 (113)
121 PRK00293 dipZ thiol:disulfide 96.9 0.0029 6.3E-08 62.0 7.5 67 97-165 474-547 (571)
122 PTZ00102 disulphide isomerase; 96.9 0.0017 3.6E-08 61.1 5.6 83 80-164 359-443 (477)
123 TIGR00411 redox_disulf_1 small 96.9 0.0033 7.2E-08 44.5 5.8 42 99-141 1-42 (82)
124 PLN02309 5'-adenylylsulfate re 96.9 0.0027 5.9E-08 60.8 6.9 44 96-139 364-407 (457)
125 cd02955 SSP411 TRX domain, SSP 96.8 0.0052 1.1E-07 48.7 7.2 72 95-167 13-95 (124)
126 PTZ00102 disulphide isomerase; 96.8 0.0021 4.6E-08 60.4 5.7 60 91-153 43-104 (477)
127 cd03065 PDI_b_Calsequestrin_N 96.8 0.0032 7E-08 49.7 5.7 49 96-144 26-79 (120)
128 cd02965 HyaE HyaE family; HyaE 96.7 0.0032 6.9E-08 49.3 4.9 49 96-145 26-76 (111)
129 KOG0910 Thioredoxin-like prote 96.5 0.0043 9.2E-08 51.0 4.5 54 97-154 61-114 (150)
130 cd02982 PDI_b'_family Protein 96.3 0.012 2.7E-07 43.4 5.9 53 98-154 13-65 (103)
131 TIGR02196 GlrX_YruB Glutaredox 96.3 0.024 5.2E-07 38.6 6.9 54 101-161 2-57 (74)
132 PF13728 TraF: F plasmid trans 96.2 0.013 2.9E-07 50.6 6.5 75 90-179 115-189 (215)
133 COG3118 Thioredoxin domain-con 96.2 0.015 3.2E-07 52.8 6.7 49 97-146 43-91 (304)
134 cd02987 Phd_like_Phd Phosducin 96.1 0.021 4.5E-07 47.8 6.9 42 98-141 84-125 (175)
135 PF07976 Phe_hydrox_dim: Pheno 96.1 0.005 1.1E-07 51.2 3.1 110 65-174 26-167 (169)
136 TIGR01130 ER_PDI_fam protein d 95.9 0.013 2.9E-07 54.2 5.4 47 96-142 363-411 (462)
137 TIGR00412 redox_disulf_2 small 95.9 0.021 4.7E-07 40.9 5.2 42 102-146 3-44 (76)
138 TIGR02200 GlrX_actino Glutared 95.8 0.036 7.7E-07 38.5 6.1 52 101-159 2-56 (77)
139 KOG0190 Protein disulfide isom 95.8 0.009 1.9E-07 57.6 3.9 64 90-156 35-101 (493)
140 cd02973 TRX_GRX_like Thioredox 95.6 0.033 7E-07 38.2 5.3 39 101-141 3-41 (67)
141 PF04592 SelP_N: Selenoprotein 95.5 0.078 1.7E-06 46.6 8.2 96 73-174 8-111 (238)
142 cd02958 UAS UAS family; UAS is 95.3 0.074 1.6E-06 40.6 6.8 67 96-164 16-89 (114)
143 cd02960 AGR Anterior Gradient 95.1 0.016 3.4E-07 46.6 2.5 85 96-182 22-110 (130)
144 smart00594 UAS UAS domain. 95.0 0.1 2.2E-06 40.7 6.8 66 96-163 26-97 (122)
145 TIGR02187 GlrX_arch Glutaredox 94.8 0.098 2.1E-06 44.6 6.9 44 96-141 132-175 (215)
146 TIGR02187 GlrX_arch Glutaredox 94.8 0.074 1.6E-06 45.4 6.1 42 96-139 19-62 (215)
147 TIGR02180 GRX_euk Glutaredoxin 94.8 0.11 2.5E-06 36.6 6.1 57 101-160 1-61 (84)
148 PF06110 DUF953: Eukaryotic pr 94.8 0.096 2.1E-06 41.4 6.1 46 96-142 19-70 (119)
149 PTZ00062 glutaredoxin; Provisi 94.7 0.06 1.3E-06 46.3 5.2 40 98-139 18-57 (204)
150 PRK11200 grxA glutaredoxin 1; 94.5 0.19 4.2E-06 36.3 6.7 58 101-160 3-65 (85)
151 PRK01655 spxA transcriptional 94.5 0.075 1.6E-06 42.4 4.9 66 101-173 2-71 (131)
152 cd02988 Phd_like_VIAF Phosduci 94.4 0.098 2.1E-06 44.4 5.8 41 98-140 103-143 (192)
153 PHA02125 thioredoxin-like prot 94.3 0.087 1.9E-06 37.4 4.6 21 101-121 2-22 (75)
154 cd02976 NrdH NrdH-redoxin (Nrd 94.2 0.27 5.9E-06 33.2 6.7 55 101-162 2-58 (73)
155 PF14595 Thioredoxin_9: Thiore 94.2 0.02 4.4E-07 45.6 1.0 66 97-164 41-109 (129)
156 cd03026 AhpF_NTD_C TRX-GRX-lik 94.1 0.077 1.7E-06 39.4 4.1 53 96-153 11-63 (89)
157 PF00462 Glutaredoxin: Glutare 94.0 0.28 6.1E-06 33.0 6.4 53 101-160 1-56 (60)
158 cd03007 PDI_a_ERp29_N PDIa fam 93.8 0.12 2.6E-06 40.7 4.7 64 89-156 10-82 (116)
159 cd03032 ArsC_Spx Arsenate Redu 93.6 0.18 3.8E-06 39.0 5.4 66 101-173 2-71 (115)
160 cd02977 ArsC_family Arsenate R 93.5 0.13 2.8E-06 38.9 4.4 66 101-173 1-70 (105)
161 TIGR02739 TraF type-F conjugat 93.4 0.26 5.6E-06 43.9 6.7 42 96-141 150-191 (256)
162 TIGR02194 GlrX_NrdH Glutaredox 93.2 0.43 9.3E-06 33.4 6.5 54 101-161 1-55 (72)
163 TIGR02190 GlrX-dom Glutaredoxi 93.2 0.42 9.1E-06 34.2 6.5 53 101-160 10-63 (79)
164 PRK12559 transcriptional regul 93.2 0.21 4.6E-06 39.8 5.4 66 101-173 2-71 (131)
165 PRK13703 conjugal pilus assemb 93.1 0.16 3.4E-06 45.1 4.9 41 96-140 143-183 (248)
166 TIGR00365 monothiol glutaredox 92.6 0.51 1.1E-05 35.5 6.4 59 94-160 9-74 (97)
167 cd03036 ArsC_like Arsenate Red 92.5 0.21 4.6E-06 38.5 4.3 65 102-173 2-70 (111)
168 cd03418 GRX_GRXb_1_3_like Glut 92.5 0.86 1.9E-05 31.5 7.2 52 101-159 2-56 (75)
169 KOG1731 FAD-dependent sulfhydr 92.3 0.074 1.6E-06 52.1 1.9 61 97-158 57-120 (606)
170 cd03028 GRX_PICOT_like Glutare 92.3 0.64 1.4E-05 34.2 6.6 61 92-160 3-70 (90)
171 PRK13344 spxA transcriptional 92.2 0.38 8.3E-06 38.4 5.6 66 101-173 2-71 (132)
172 cd02979 PHOX_C FAD-dependent P 92.1 0.61 1.3E-05 38.6 6.9 111 72-182 1-145 (167)
173 TIGR01617 arsC_related transcr 92.1 0.37 8.1E-06 37.3 5.3 64 102-172 2-69 (117)
174 cd02066 GRX_family Glutaredoxi 91.9 0.76 1.7E-05 30.6 6.2 53 101-160 2-56 (72)
175 PRK10329 glutaredoxin-like pro 91.9 0.95 2.1E-05 32.9 7.0 55 101-162 3-58 (81)
176 KOG0191 Thioredoxin/protein di 91.7 0.37 7.9E-06 44.7 5.7 54 97-154 47-100 (383)
177 PRK08294 phenol 2-monooxygenas 91.6 0.64 1.4E-05 46.2 7.6 117 66-182 460-608 (634)
178 PF13462 Thioredoxin_4: Thiore 91.4 0.62 1.3E-05 36.8 6.0 50 87-138 4-54 (162)
179 KOG0908 Thioredoxin-like prote 91.4 0.28 6E-06 43.8 4.3 42 96-139 20-61 (288)
180 cd03029 GRX_hybridPRX5 Glutare 91.2 1 2.2E-05 31.3 6.4 50 101-157 3-53 (72)
181 cd03023 DsbA_Com1_like DsbA fa 91.0 0.34 7.4E-06 37.6 4.1 38 96-135 4-41 (154)
182 TIGR02183 GRXA Glutaredoxin, G 90.7 0.68 1.5E-05 33.8 5.2 58 101-160 2-64 (86)
183 TIGR02189 GlrX-like_plant Glut 90.6 0.55 1.2E-05 35.5 4.7 58 94-160 5-68 (99)
184 PHA03050 glutaredoxin; Provisi 90.5 1.2 2.6E-05 34.3 6.6 56 101-158 15-73 (108)
185 cd03419 GRX_GRXh_1_2_like Glut 90.4 1.3 2.8E-05 31.1 6.3 53 101-158 2-57 (82)
186 PRK10824 glutaredoxin-4; Provi 90.2 1.2 2.7E-05 34.9 6.6 61 94-162 12-79 (115)
187 PRK10638 glutaredoxin 3; Provi 90.2 1.3 2.9E-05 31.7 6.4 52 101-159 4-57 (83)
188 PF13778 DUF4174: Domain of un 90.0 1 2.2E-05 35.2 6.0 77 90-166 3-92 (118)
189 KOG0190 Protein disulfide isom 88.6 0.54 1.2E-05 45.6 4.2 34 96-129 383-416 (493)
190 KOG3425 Uncharacterized conser 88.2 1.3 2.8E-05 35.3 5.3 35 107-142 43-77 (128)
191 TIGR03759 conj_TIGR03759 integ 88.0 2 4.2E-05 37.0 6.7 70 97-172 109-185 (200)
192 cd03035 ArsC_Yffb Arsenate Red 87.9 0.9 1.9E-05 34.8 4.2 63 101-172 1-67 (105)
193 COG0695 GrxC Glutaredoxin and 87.8 2.1 4.5E-05 31.0 6.0 54 102-162 4-61 (80)
194 cd03027 GRX_DEP Glutaredoxin ( 87.5 3.9 8.4E-05 28.4 7.1 52 101-159 3-56 (73)
195 TIGR02181 GRX_bact Glutaredoxi 87.1 0.77 1.7E-05 32.4 3.2 50 101-157 1-52 (79)
196 cd02991 UAS_ETEA UAS family, E 87.1 2.4 5.1E-05 33.1 6.2 91 96-191 16-112 (116)
197 PF05768 DUF836: Glutaredoxin- 86.8 1.9 4.1E-05 31.1 5.2 56 101-162 2-57 (81)
198 KOG0191 Thioredoxin/protein di 86.6 1.1 2.4E-05 41.5 4.9 57 98-154 163-220 (383)
199 COG4232 Thiol:disulfide interc 85.4 0.86 1.9E-05 44.9 3.6 75 90-164 465-546 (569)
200 COG2179 Predicted hydrolase of 82.5 3 6.4E-05 35.2 5.1 41 116-156 48-88 (175)
201 cd03019 DsbA_DsbA DsbA family, 81.7 2.2 4.8E-05 34.2 4.1 38 96-134 14-51 (178)
202 cd03020 DsbA_DsbC_DsbG DsbA fa 81.2 2.6 5.6E-05 35.2 4.5 25 97-121 77-101 (197)
203 PRK10877 protein disulfide iso 79.9 3.9 8.4E-05 35.6 5.3 37 96-136 106-142 (232)
204 cd03034 ArsC_ArsC Arsenate Red 79.7 3.3 7.2E-05 31.8 4.3 66 101-173 1-70 (112)
205 PRK10026 arsenate reductase; P 79.5 4.3 9.3E-05 33.0 5.1 66 101-173 4-73 (141)
206 TIGR00995 3a0901s06TIC22 chlor 79.0 6.6 0.00014 35.3 6.5 85 70-162 77-161 (270)
207 PRK06184 hypothetical protein; 78.2 7.1 0.00015 37.2 6.9 87 68-182 385-472 (502)
208 PTZ00062 glutaredoxin; Provisi 78.2 2.9 6.3E-05 35.9 3.9 64 90-161 106-176 (204)
209 PRK06183 mhpA 3-(3-hydroxyphen 78.0 6.6 0.00014 37.9 6.7 99 69-182 411-509 (538)
210 PF03190 Thioredox_DsbH: Prote 77.5 8.3 0.00018 32.2 6.2 71 96-166 36-116 (163)
211 PF13419 HAD_2: Haloacid dehal 76.7 11 0.00024 29.2 6.6 34 121-154 84-117 (176)
212 COG1393 ArsC Arsenate reductas 76.0 4.5 9.7E-05 31.7 4.1 66 100-172 2-71 (117)
213 PF13192 Thioredoxin_3: Thiore 74.9 11 0.00023 26.6 5.6 48 106-160 7-56 (76)
214 TIGR00014 arsC arsenate reduct 74.6 6 0.00013 30.5 4.5 66 101-173 1-71 (114)
215 KOG0912 Thiol-disulfide isomer 73.7 8.4 0.00018 35.6 5.7 33 96-128 12-44 (375)
216 PRK10853 putative reductase; P 72.3 7.9 0.00017 30.2 4.7 64 101-173 2-69 (118)
217 PRK11657 dsbG disulfide isomer 72.2 8 0.00017 34.0 5.2 38 96-136 116-153 (251)
218 cd02972 DsbA_family DsbA famil 72.0 5.5 0.00012 27.7 3.5 35 101-136 1-35 (98)
219 PF09695 YtfJ_HI0045: Bacteria 71.8 29 0.00062 29.0 8.0 103 70-174 2-124 (160)
220 cd03041 GST_N_2GST_N GST_N fam 69.9 23 0.00051 24.6 6.4 54 101-162 2-58 (77)
221 cd03060 GST_N_Omega_like GST_N 68.5 9.6 0.00021 26.1 4.0 54 102-162 2-56 (71)
222 PRK13601 putative L7Ae-like ri 67.5 22 0.00048 26.1 5.9 53 123-176 17-73 (82)
223 cd01427 HAD_like Haloacid deha 66.7 13 0.00028 27.2 4.7 38 116-153 26-63 (139)
224 PRK12759 bifunctional gluaredo 65.6 17 0.00037 34.3 6.2 41 101-148 4-44 (410)
225 COG1651 DsbG Protein-disulfide 64.1 15 0.00032 31.4 5.1 46 80-127 69-114 (244)
226 PRK08132 FAD-dependent oxidore 64.1 15 0.00033 35.4 5.7 96 68-181 426-521 (547)
227 PF03960 ArsC: ArsC family; I 63.8 20 0.00043 27.1 5.3 59 105-170 2-64 (110)
228 PF06053 DUF929: Domain of unk 63.3 10 0.00022 33.7 4.0 38 92-129 53-90 (249)
229 TIGR01662 HAD-SF-IIIA HAD-supe 62.9 33 0.00071 26.1 6.5 40 117-156 28-75 (132)
230 PRK04148 hypothetical protein; 62.0 68 0.0015 25.8 8.2 95 125-224 34-133 (134)
231 PF11072 DUF2859: Protein of u 61.7 43 0.00094 27.3 7.1 61 115-176 74-134 (142)
232 TIGR03765 ICE_PFL_4695 integra 61.4 44 0.00096 25.9 6.7 61 115-176 36-96 (105)
233 PRK13600 putative ribosomal pr 60.6 40 0.00088 25.0 6.2 56 120-176 19-78 (84)
234 cd00570 GST_N_family Glutathio 60.0 11 0.00025 24.1 3.0 56 103-164 3-59 (71)
235 PTZ00258 GTP-binding protein; 59.8 32 0.0007 32.5 6.9 127 96-225 220-386 (390)
236 TIGR01428 HAD_type_II 2-haloal 59.4 51 0.0011 26.9 7.4 83 117-200 95-191 (198)
237 PF01323 DSBA: DSBA-like thior 59.4 31 0.00068 27.8 6.0 41 101-141 2-42 (193)
238 PF00875 DNA_photolyase: DNA p 58.7 30 0.00065 27.8 5.8 65 97-162 25-97 (165)
239 PF05176 ATP-synt_10: ATP10 pr 58.1 20 0.00043 31.8 4.9 104 69-175 95-216 (252)
240 cd03033 ArsC_15kD Arsenate Red 56.2 24 0.00052 27.3 4.6 64 101-173 2-69 (113)
241 PRK01018 50S ribosomal protein 55.8 49 0.0011 24.9 6.1 51 123-173 25-79 (99)
242 PF00702 Hydrolase: haloacid d 55.3 34 0.00073 27.7 5.6 38 117-154 130-167 (215)
243 cd03061 GST_N_CLIC GST_N famil 55.1 14 0.0003 27.7 3.0 54 107-167 20-74 (91)
244 PF04278 Tic22: Tic22-like fam 55.1 15 0.00033 32.9 3.7 84 71-162 71-161 (274)
245 COG3019 Predicted metal-bindin 54.8 35 0.00075 28.0 5.3 50 98-157 25-74 (149)
246 PTZ00106 60S ribosomal protein 54.5 68 0.0015 24.7 6.8 51 124-174 35-89 (108)
247 PF09419 PGP_phosphatase: Mito 51.1 36 0.00077 28.4 5.1 83 74-158 17-112 (168)
248 PF12710 HAD: haloacid dehalog 50.4 20 0.00044 28.7 3.5 35 121-155 96-130 (192)
249 PRK13602 putative ribosomal pr 49.8 78 0.0017 23.0 6.2 53 122-175 19-75 (82)
250 KOG1752 Glutaredoxin and relat 49.5 27 0.00059 26.8 3.8 43 99-149 15-60 (104)
251 COG3769 Predicted hydrolase (H 48.3 23 0.0005 31.5 3.6 45 123-167 32-77 (274)
252 PRK11320 prpB 2-methylisocitra 48.2 92 0.002 28.3 7.7 60 116-175 165-232 (292)
253 TIGR01485 SPP_plant-cyano sucr 47.8 31 0.00067 29.6 4.4 54 114-167 21-76 (249)
254 PRK07714 hypothetical protein; 47.0 1.2E+02 0.0026 22.7 8.1 63 123-186 27-93 (100)
255 cd03059 GST_N_SspA GST_N famil 46.7 46 0.001 22.3 4.4 51 103-162 3-56 (73)
256 TIGR03556 photolyase_8HDF deox 46.0 1.3E+02 0.0029 28.8 8.8 63 97-160 27-97 (471)
257 TIGR00591 phr2 photolyase PhrI 46.0 1.3E+02 0.0028 28.5 8.7 63 97-160 53-120 (454)
258 TIGR01761 thiaz-red thiazoliny 45.8 29 0.00064 32.1 4.2 48 108-162 10-57 (343)
259 cd05017 SIS_PGI_PMI_1 The memb 45.7 1.1E+02 0.0025 23.0 6.9 50 97-154 43-92 (119)
260 cd01821 Rhamnogalacturan_acety 45.4 88 0.0019 25.4 6.6 43 113-155 90-149 (198)
261 cd03037 GST_N_GRX2 GST_N famil 44.3 73 0.0016 21.4 5.1 48 104-161 4-54 (71)
262 TIGR02319 CPEP_Pphonmut carbox 43.2 1.3E+02 0.0029 27.2 7.9 60 117-176 165-232 (294)
263 PF13714 PEP_mutase: Phosphoen 42.7 74 0.0016 27.9 6.0 75 100-174 138-216 (238)
264 cd03045 GST_N_Delta_Epsilon GS 42.5 28 0.00061 23.5 2.8 57 103-164 3-61 (74)
265 cd03051 GST_N_GTT2_like GST_N 42.4 61 0.0013 21.5 4.5 55 103-162 3-59 (74)
266 COG0560 SerB Phosphoserine pho 42.3 43 0.00092 28.6 4.4 39 117-155 80-118 (212)
267 PHA03398 viral phosphatase sup 41.6 58 0.0012 29.9 5.3 52 117-168 151-204 (303)
268 cd00860 ThrRS_anticodon ThrRS 41.5 1.2E+02 0.0026 21.1 6.3 47 118-164 16-63 (91)
269 TIGR01490 HAD-SF-IB-hyp1 HAD-s 41.3 73 0.0016 25.9 5.6 34 121-154 94-127 (202)
270 PRK10954 periplasmic protein d 40.8 31 0.00067 29.0 3.3 39 96-136 37-78 (207)
271 TIGR01684 viral_ppase viral ph 40.0 89 0.0019 28.7 6.2 43 117-159 149-193 (301)
272 PF10740 DUF2529: Protein of u 40.0 56 0.0012 27.6 4.6 82 72-163 60-146 (172)
273 TIGR01488 HAD-SF-IB Haloacid D 39.9 56 0.0012 25.8 4.6 37 118-154 77-113 (177)
274 TIGR03609 S_layer_CsaB polysac 39.5 2.1E+02 0.0045 25.0 8.5 61 97-158 172-236 (298)
275 PRK10200 putative racemase; Pr 38.8 61 0.0013 28.0 4.9 43 115-159 60-103 (230)
276 TIGR02463 MPGP_rel mannosyl-3- 37.8 64 0.0014 26.8 4.7 48 120-167 22-70 (221)
277 KOG1615 Phosphoserine phosphat 37.7 80 0.0017 27.6 5.2 47 119-165 93-145 (227)
278 cd01453 vWA_transcription_fact 37.5 1.7E+02 0.0037 24.0 7.3 43 120-162 126-169 (183)
279 TIGR02320 PEP_mutase phosphoen 37.3 1.9E+02 0.0041 26.1 7.9 58 117-174 169-237 (285)
280 TIGR01668 YqeG_hyp_ppase HAD s 37.2 2.2E+02 0.0048 23.0 7.7 83 117-199 46-134 (170)
281 TIGR02765 crypto_DASH cryptoch 37.2 94 0.002 29.1 6.2 47 115-162 59-105 (429)
282 PF11360 DUF3110: Protein of u 36.3 1.1E+02 0.0023 22.8 5.2 64 84-159 12-75 (86)
283 cd03055 GST_N_Omega GST_N fami 36.2 39 0.00084 24.3 2.8 54 101-161 19-73 (89)
284 TIGR02317 prpB methylisocitrat 35.7 1.8E+02 0.0039 26.3 7.5 58 117-174 161-226 (285)
285 PF01206 TusA: Sulfurtransfera 35.7 1.4E+02 0.0031 20.2 6.1 56 101-160 2-59 (70)
286 TIGR02253 CTE7 HAD superfamily 35.5 2.5E+02 0.0054 23.0 8.0 82 118-200 98-194 (221)
287 COG4469 CoiA Competence protei 35.5 8.9 0.00019 35.5 -0.9 34 78-116 2-35 (342)
288 PF02966 DIM1: Mitosis protein 35.1 1.3E+02 0.0027 24.4 5.7 103 96-200 19-125 (133)
289 TIGR00035 asp_race aspartate r 34.9 76 0.0016 27.1 4.8 59 115-173 60-119 (229)
290 TIGR01689 EcbF-BcbF capsule bi 34.5 1.3E+02 0.0028 23.8 5.7 44 118-161 28-87 (126)
291 PRK06683 hypothetical protein; 34.2 1.7E+02 0.0036 21.3 5.9 52 123-175 20-75 (82)
292 PF04800 ETC_C1_NDUFA4: ETC co 33.9 49 0.0011 25.4 3.1 30 134-163 51-80 (101)
293 cd03031 GRX_GRX_like Glutaredo 33.8 1.6E+02 0.0035 23.9 6.3 46 108-160 15-67 (147)
294 PF01408 GFO_IDH_MocA: Oxidore 33.6 1.1E+02 0.0024 22.6 5.0 34 129-164 24-57 (120)
295 PRK01158 phosphoglycolate phos 33.6 1.5E+02 0.0032 24.5 6.4 49 118-166 24-72 (230)
296 PRK11869 2-oxoacid ferredoxin 33.5 39 0.00084 30.5 2.9 23 104-126 6-30 (280)
297 PRK12702 mannosyl-3-phosphogly 33.3 79 0.0017 29.0 4.8 46 121-166 25-70 (302)
298 PLN02954 phosphoserine phospha 32.9 95 0.0021 25.7 5.0 38 117-154 87-124 (224)
299 cd01460 vWA_midasin VWA_Midasi 32.4 56 0.0012 29.3 3.6 15 126-140 190-204 (266)
300 cd01450 vWFA_subfamily_ECM Von 32.3 1.1E+02 0.0023 23.3 5.0 34 118-151 120-155 (161)
301 PRK04175 rpl7ae 50S ribosomal 32.0 2.5E+02 0.0054 22.0 8.2 50 123-173 39-93 (122)
302 cd05013 SIS_RpiR RpiR-like pro 31.8 1E+02 0.0022 22.9 4.7 44 98-147 61-104 (139)
303 cd03040 GST_N_mPGES2 GST_N fam 31.6 61 0.0013 22.1 3.1 51 102-161 3-54 (77)
304 PF01297 TroA: Periplasmic sol 31.5 94 0.002 26.7 4.9 46 116-162 185-231 (256)
305 PF12740 Chlorophyllase2: Chlo 31.4 1.1E+02 0.0024 27.3 5.4 36 97-137 16-51 (259)
306 TIGR01616 nitro_assoc nitrogen 31.3 1.2E+02 0.0025 24.0 4.9 63 101-172 3-69 (126)
307 PF05116 S6PP: Sucrose-6F-phos 31.2 1.2E+02 0.0027 26.2 5.6 58 110-167 15-74 (247)
308 TIGR00338 serB phosphoserine p 30.5 86 0.0019 25.9 4.4 33 122-154 93-125 (219)
309 KOG4530 Predicted flavoprotein 30.2 66 0.0014 27.2 3.4 31 94-124 116-146 (199)
310 PRK05778 2-oxoglutarate ferred 30.2 37 0.00079 30.9 2.1 26 104-130 16-41 (301)
311 KOG2741 Dimeric dihydrodiol de 30.0 85 0.0019 29.4 4.5 43 111-153 13-55 (351)
312 TIGR03143 AhpF_homolog putativ 29.9 99 0.0021 30.2 5.2 60 96-160 475-536 (555)
313 PF03129 HGTP_anticodon: Antic 29.6 2.1E+02 0.0045 20.3 5.8 46 119-164 18-64 (94)
314 PF14968 CCDC84: Coiled coil p 29.6 11 0.00025 34.9 -1.2 15 105-119 57-71 (336)
315 PF01248 Ribosomal_L7Ae: Ribos 29.5 1.1E+02 0.0024 22.1 4.3 52 122-174 23-79 (95)
316 PF15632 ATPgrasp_Ter: ATP-gra 29.4 98 0.0021 28.6 4.8 56 116-171 76-143 (329)
317 TIGR01482 SPP-subfamily Sucros 29.4 1.7E+02 0.0037 24.0 6.0 43 121-163 22-64 (225)
318 TIGR02321 Pphn_pyruv_hyd phosp 29.3 2.6E+02 0.0057 25.2 7.5 40 120-159 169-210 (290)
319 PF07905 PucR: Purine cataboli 29.3 1.6E+02 0.0036 22.6 5.5 38 118-155 60-102 (123)
320 KOG3414 Component of the U4/U6 29.2 3.1E+02 0.0068 22.2 7.2 54 97-154 23-76 (142)
321 COG0821 gcpE 1-hydroxy-2-methy 28.7 2.5E+02 0.0054 26.4 7.2 65 96-164 19-84 (361)
322 KOG0713 Molecular chaperone (D 28.6 18 0.00039 33.6 -0.1 34 137-171 49-83 (336)
323 TIGR01491 HAD-SF-IB-PSPlk HAD- 28.6 1.1E+02 0.0025 24.5 4.7 35 120-154 86-120 (201)
324 TIGR03351 PhnX-like phosphonat 28.4 1.1E+02 0.0024 25.3 4.6 36 119-154 92-127 (220)
325 PLN02770 haloacid dehalogenase 28.4 2.9E+02 0.0062 23.6 7.4 78 121-199 115-206 (248)
326 cd00377 ICL_PEPM Members of th 28.2 3.3E+02 0.0072 23.6 7.8 58 117-174 160-223 (243)
327 cd00945 Aldolase_Class_I Class 27.8 3.1E+02 0.0067 21.7 7.9 60 98-162 115-182 (201)
328 TIGR02743 TraW type-F conjugat 27.8 89 0.0019 26.9 4.0 58 113-178 133-190 (202)
329 smart00775 LNS2 LNS2 domain. T 27.7 2.2E+02 0.0048 22.9 6.2 50 117-166 30-88 (157)
330 PF01583 APS_kinase: Adenylyls 27.4 2.2E+02 0.0047 23.4 6.1 56 113-168 57-115 (156)
331 cd00861 ProRS_anticodon_short 27.4 2.1E+02 0.0046 20.0 5.5 49 116-164 17-66 (94)
332 PRK00865 glutamate racemase; P 27.3 1.2E+02 0.0027 26.5 5.0 67 99-168 32-104 (261)
333 PF13417 GST_N_3: Glutathione 26.9 98 0.0021 21.2 3.5 53 104-163 2-55 (75)
334 COG0796 MurI Glutamate racemas 26.9 1.3E+02 0.0027 27.2 4.9 58 99-156 32-95 (269)
335 PF02244 Propep_M14: Carboxype 26.7 87 0.0019 21.6 3.2 34 132-165 36-69 (74)
336 PLN02311 chalcone isomerase 26.7 1.4E+02 0.003 27.0 5.1 36 1-37 1-36 (271)
337 TIGR01656 Histidinol-ppas hist 26.7 3.1E+02 0.0067 21.3 7.4 42 114-155 27-83 (147)
338 COG0809 QueA S-adenosylmethion 26.7 2.1E+02 0.0046 26.8 6.4 73 107-187 230-308 (348)
339 TIGR00099 Cof-subfamily Cof su 26.7 1.7E+02 0.0036 24.9 5.6 47 120-166 22-68 (256)
340 PF04134 DUF393: Protein of un 26.6 1.2E+02 0.0025 22.6 4.1 18 105-122 3-20 (114)
341 cd01452 VWA_26S_proteasome_sub 26.4 1.2E+02 0.0027 25.6 4.6 36 117-152 123-162 (187)
342 COG0561 Cof Predicted hydrolas 26.3 1.3E+02 0.0027 25.8 4.8 52 117-168 23-74 (264)
343 cd01018 ZntC Metal binding pro 26.3 2.1E+02 0.0046 24.9 6.3 46 116-162 203-249 (266)
344 cd01026 TOPRIM_OLD TOPRIM_OLD: 26.2 2.6E+02 0.0056 20.3 6.5 41 125-165 28-68 (97)
345 COG5561 Predicted metal-bindin 26.2 45 0.00098 25.4 1.6 45 107-152 5-56 (101)
346 KOG1157 Predicted guanosine po 26.1 78 0.0017 30.6 3.5 61 119-179 269-340 (543)
347 TIGR02461 osmo_MPG_phos mannos 26.0 2.1E+02 0.0045 24.4 6.0 46 120-165 21-66 (225)
348 PF08282 Hydrolase_3: haloacid 26.0 2.1E+02 0.0046 23.3 5.9 48 118-165 19-66 (254)
349 PRK14502 bifunctional mannosyl 25.9 1.9E+02 0.0041 29.7 6.4 74 72-166 412-485 (694)
350 PF12017 Tnp_P_element: Transp 25.9 1.3E+02 0.0028 26.6 4.7 38 116-153 195-232 (236)
351 TIGR02766 crypt_chrom_pln cryp 25.8 1.9E+02 0.0042 27.5 6.3 44 116-160 50-94 (475)
352 cd03053 GST_N_Phi GST_N family 25.7 98 0.0021 20.9 3.3 57 101-162 2-60 (76)
353 TIGR01487 SPP-like sucrose-pho 25.6 1.9E+02 0.0041 23.9 5.6 42 118-159 22-63 (215)
354 PF00448 SRP54: SRP54-type pro 25.6 2.2E+02 0.0048 23.8 6.0 58 98-159 1-63 (196)
355 PRK01122 potassium-transportin 25.6 1.3E+02 0.0027 30.7 5.2 10 201-210 510-519 (679)
356 COG4615 PvdE ABC-type sideroph 25.6 2E+02 0.0043 28.1 6.2 55 93-149 463-520 (546)
357 COG2143 Thioredoxin-related pr 25.5 2.8E+02 0.0061 23.4 6.4 25 96-120 41-65 (182)
358 cd01473 vWA_CTRP CTRP for CS 25.5 86 0.0019 26.1 3.5 24 119-142 128-151 (192)
359 PRK14010 potassium-transportin 25.3 1.3E+02 0.0029 30.5 5.3 31 123-153 450-480 (673)
360 cd00859 HisRS_anticodon HisRS 25.2 2.2E+02 0.0048 19.2 6.2 46 116-161 14-60 (91)
361 PF01380 SIS: SIS domain SIS d 25.0 1.5E+02 0.0032 22.0 4.5 43 117-162 67-109 (131)
362 cd03025 DsbA_FrnE_like DsbA fa 25.0 81 0.0018 25.4 3.2 33 101-134 3-35 (193)
363 PF02514 CobN-Mg_chel: CobN/Ma 25.0 2.2E+02 0.0048 30.7 7.1 73 98-173 73-162 (1098)
364 PRK10530 pyridoxal phosphate ( 25.0 1.7E+02 0.0038 24.8 5.4 47 120-166 26-72 (272)
365 COG2513 PrpB PEP phosphonomuta 25.0 2.6E+02 0.0056 25.5 6.6 59 116-174 165-231 (289)
366 TIGR01449 PGP_bact 2-phosphogl 25.0 1.2E+02 0.0025 24.8 4.2 37 118-154 89-125 (213)
367 COG1011 Predicted hydrolase (H 24.2 3.5E+02 0.0077 22.0 7.0 84 115-200 100-198 (229)
368 PF12098 DUF3574: Protein of u 24.2 3E+02 0.0066 21.2 6.0 57 73-131 32-93 (104)
369 TIGR01511 ATPase-IB1_Cu copper 24.1 1.7E+02 0.0037 28.7 5.7 38 117-154 408-445 (562)
370 COG4607 CeuA ABC-type enteroch 24.0 1.8E+02 0.0039 26.8 5.4 60 72-150 37-98 (320)
371 PF02153 PDH: Prephenate dehyd 23.9 67 0.0015 28.0 2.6 56 88-150 115-170 (258)
372 PRK10017 colanic acid biosynth 23.9 5.9E+02 0.013 24.2 9.2 42 96-138 233-281 (426)
373 TIGR01647 ATPase-IIIA_H plasma 23.7 1.5E+02 0.0032 30.4 5.3 36 121-156 449-484 (755)
374 TIGR00067 glut_race glutamate 23.5 1.9E+02 0.0041 25.3 5.4 65 101-165 27-98 (251)
375 PF00803 3A: 3A/RNA2 movement 23.0 60 0.0013 28.5 2.1 30 83-114 112-141 (234)
376 cd03058 GST_N_Tau GST_N family 22.9 1.2E+02 0.0025 20.6 3.2 54 103-163 3-58 (74)
377 COG0552 FtsY Signal recognitio 22.7 4.6E+02 0.0099 24.5 7.8 70 96-169 137-214 (340)
378 PRK13738 conjugal transfer pil 22.7 1.3E+02 0.0029 26.0 4.1 58 113-178 131-188 (209)
379 TIGR01489 DKMTPPase-SF 2,3-dik 22.7 1.5E+02 0.0033 23.3 4.4 36 119-154 77-112 (188)
380 PF08285 DPM3: Dolichol-phosph 22.6 88 0.0019 23.5 2.7 27 107-133 64-91 (91)
381 TIGR01670 YrbI-phosphatas 3-de 22.6 1.5E+02 0.0031 23.6 4.2 33 122-154 36-68 (154)
382 cd03421 SirA_like_N SirA_like_ 22.5 2E+02 0.0044 19.4 4.4 52 103-159 3-56 (67)
383 TIGR01497 kdpB K+-transporting 22.4 1.7E+02 0.0036 29.8 5.3 19 119-137 414-432 (675)
384 KOG0911 Glutaredoxin-related p 22.1 1.6E+02 0.0034 26.0 4.5 62 96-159 16-77 (227)
385 COG5418 Predicted secreted pro 22.0 1.2E+02 0.0027 25.1 3.6 59 72-140 49-107 (164)
386 cd05008 SIS_GlmS_GlmD_1 SIS (S 21.9 1.1E+02 0.0024 22.9 3.2 46 98-149 47-92 (126)
387 PRK00865 glutamate racemase; P 21.8 3.1E+02 0.0068 23.9 6.5 51 117-168 164-215 (261)
388 TIGR03436 acidobact_VWFA VWFA- 21.8 3.6E+02 0.0078 23.6 6.9 55 96-154 164-234 (296)
389 TIGR02949 anti_SigH_actin anti 21.8 1E+02 0.0022 22.5 2.8 23 107-129 37-59 (84)
390 cd05014 SIS_Kpsf KpsF-like pro 21.7 91 0.002 23.4 2.7 33 116-148 60-92 (128)
391 PRK11509 hydrogenase-1 operon 21.6 2.2E+02 0.0047 22.8 4.9 56 88-143 25-82 (132)
392 COG1636 Uncharacterized protei 21.5 1.5E+02 0.0032 25.6 4.1 44 106-155 9-63 (204)
393 TIGR03333 salvage_mtnX 2-hydro 21.4 2.2E+02 0.0048 23.6 5.3 35 118-152 74-108 (214)
394 cd01829 SGNH_hydrolase_peri2 S 21.4 3.6E+02 0.0078 21.5 6.4 25 114-138 92-116 (200)
395 TIGR02471 sucr_syn_bact_C sucr 21.3 1.9E+02 0.0041 24.3 4.9 48 117-165 18-67 (236)
396 PF12689 Acid_PPase: Acid Phos 21.3 2.1E+02 0.0047 23.7 5.0 13 79-91 35-47 (169)
397 PRK15126 thiamin pyrimidine py 21.2 2.8E+02 0.0062 23.8 6.0 47 120-166 25-71 (272)
398 PRK05370 argininosuccinate syn 21.1 2.7E+02 0.0059 27.0 6.2 71 89-169 4-81 (447)
399 TIGR01261 hisB_Nterm histidino 20.8 2.1E+02 0.0047 23.1 4.9 42 117-158 32-89 (161)
400 PLN03098 LPA1 LOW PSII ACCUMUL 20.8 2.9E+02 0.0063 26.8 6.4 64 74-140 275-338 (453)
401 COG1648 CysG Siroheme synthase 20.7 3.2E+02 0.007 23.4 6.1 33 130-162 72-107 (210)
402 cd00738 HGTP_anticodon HGTP an 20.6 3E+02 0.0065 19.0 6.7 47 116-162 17-64 (94)
403 cd01137 PsaA Metal binding pro 20.5 1.9E+02 0.0041 25.7 4.8 38 117-154 213-251 (287)
404 TIGR01509 HAD-SF-IA-v3 haloaci 20.4 3.2E+02 0.0069 21.3 5.8 37 117-154 88-124 (183)
405 TIGR01484 HAD-SF-IIB HAD-super 20.4 3.1E+02 0.0067 22.2 5.8 48 117-166 20-67 (204)
406 cd02983 P5_C P5 family, C-term 20.3 4.2E+02 0.0092 20.6 6.8 67 97-163 21-92 (130)
407 TIGR01664 DNA-3'-Pase DNA 3'-p 20.2 2.3E+02 0.005 22.9 5.0 40 117-156 45-96 (166)
No 1
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=99.93 E-value=2.5e-25 Score=176.66 Aligned_cols=140 Identities=31% Similarity=0.432 Sum_probs=120.0
Q ss_pred cCCCcEEecCCCCeEeCCCccCCCeEEEEEecCCCChhHHHHHHHHHHhHHHHHHcCCEEEEEeCCCHHHHHHHHHHcCC
Q 027245 74 LLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKF 153 (226)
Q Consensus 74 ~apdf~L~D~~G~~v~Lsdl~~~~~vVVvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs~~~~~~i~~f~~~~~~ 153 (226)
.+|+|++.|.+|+.++++++.+++++||+|||++|||+|++|++.|++.++++++.|+.+|+|+.++.+..++|++++++
T Consensus 1 ~~p~f~l~~~~g~~~~l~~~~~~~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~~~~~~~~~~~~~ 80 (149)
T cd02970 1 TAPDFELPDAGGETVTLSALLGEGPVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPESPEKLEAFDKGKFL 80 (149)
T ss_pred CCCCccccCCCCCEEchHHHhcCCCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCCHHHHHHHHHhcCC
Confidence 47999999999999999998777899999999999999999999999999999999999999999999888899999999
Q ss_pred ceeEEecCChHHHHHcCCccccceeecchhhHHHHHHHHhhhcccccccccCCccccCccc--ccCceE
Q 027245 154 KGEVYADPNHSSYEALSFVSGVLVTFTPKAGLKIIQSYMEGYRQDWKLSFERDTVSRGGWI--KKLGMI 220 (226)
Q Consensus 154 pfpll~Dp~~~ly~alGv~~~~~~t~~p~a~~~~~~~~~~G~r~~w~~~~~GD~~Q~GG~~--q~gg~~ 220 (226)
+||+++|+++.++++||+.........+...++ ..+..+.....||..|.+|.+ -.+|.|
T Consensus 81 ~~p~~~D~~~~~~~~~g~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~p~~fvid~~g~i 142 (149)
T cd02970 81 PFPVYADPDRKLYRALGLVRSLPWSNTPRALWK-------NAAIGFRGNDEGDGLQLPGVFVIGPDGTI 142 (149)
T ss_pred CCeEEECCchhHHHHcCceecCcHHHHHHHHhh-------CcccccccCCCCcccccceEEEECCCCeE
Confidence 999999999999999999887666655554443 223333467789999999988 333444
No 2
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=5.7e-24 Score=174.89 Aligned_cols=106 Identities=17% Similarity=0.197 Sum_probs=101.5
Q ss_pred CccccCcCCCcEEecCCCCeEeCCCccCCCeEEEEEecCCCChhHHHHHHHHHHhHHHHHHcCCEEEEEeCCCHHHHHHH
Q 027245 68 SEDTKNLLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTF 147 (226)
Q Consensus 68 ~~~~g~~apdf~L~D~~G~~v~Lsdl~~~~~vVVvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs~~~~~~i~~f 147 (226)
.+.+|++||||+|.|.+|++++|+++. ++++||+||+..++|.|..|++++++.+++|++.|+.|++||.|+++..++|
T Consensus 3 ~l~~G~~aPdF~Lp~~~g~~v~Lsd~~-Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~a~V~GIS~Ds~~~~~~F 81 (157)
T COG1225 3 MLKVGDKAPDFELPDQDGETVSLSDLR-GKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLGAVVLGISPDSPKSHKKF 81 (157)
T ss_pred cCCCCCcCCCeEeecCCCCEEehHHhc-CCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHH
Confidence 467899999999999999999999984 6699999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCceeEEecCChHHHHHcCCccc
Q 027245 148 SEQTKFKGEVYADPNHSSYEALSFVSG 174 (226)
Q Consensus 148 ~~~~~~pfpll~Dp~~~ly~alGv~~~ 174 (226)
+++++++|++++|+++++.++||+...
T Consensus 82 ~~k~~L~f~LLSD~~~~v~~~ygv~~~ 108 (157)
T COG1225 82 AEKHGLTFPLLSDEDGEVAEAYGVWGE 108 (157)
T ss_pred HHHhCCCceeeECCcHHHHHHhCcccc
Confidence 999999999999999999999999763
No 3
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=99.86 E-value=3e-21 Score=148.96 Aligned_cols=102 Identities=21% Similarity=0.308 Sum_probs=96.6
Q ss_pred ccCcCCCcEEecCCCCeEeCCCccCCCeEEEEEecCCCChhHHHHHHHHHHhHHHHHHcCCEEEEEeCCCHHHHHHHHHH
Q 027245 71 TKNLLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQ 150 (226)
Q Consensus 71 ~g~~apdf~L~D~~G~~v~Lsdl~~~~~vVVvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs~~~~~~i~~f~~~ 150 (226)
+|+++|+|++.|.+|+.++|+++ +++++||+||+..|||.|++++++|+++++++++.|+++|+|+.++.+.+++|.++
T Consensus 1 vG~~~P~f~l~~~~g~~~~l~~l-~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~ 79 (124)
T PF00578_consen 1 VGDKAPDFTLTDSDGKTVSLSDL-KGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDDPEEIKQFLEE 79 (124)
T ss_dssp TTSBGGCEEEETTTSEEEEGGGG-TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSHHHHHHHHHH
T ss_pred CcCCCCCcEeECCCCCEEEHHHH-CCCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeecccccccchhhhhhh
Confidence 59999999999999999999998 67777777777779999999999999999999999999999999999999999999
Q ss_pred cCCceeEEecCChHHHHHcCCcc
Q 027245 151 TKFKGEVYADPNHSSYEALSFVS 173 (226)
Q Consensus 151 ~~~pfpll~Dp~~~ly~alGv~~ 173 (226)
.+++||++.|+++.+.+.||+..
T Consensus 80 ~~~~~~~~~D~~~~~~~~~~~~~ 102 (124)
T PF00578_consen 80 YGLPFPVLSDPDGELAKAFGIED 102 (124)
T ss_dssp HTCSSEEEEETTSHHHHHTTCEE
T ss_pred hccccccccCcchHHHHHcCCcc
Confidence 99999999999999999999984
No 4
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=99.85 E-value=4.3e-21 Score=157.13 Aligned_cols=104 Identities=18% Similarity=0.212 Sum_probs=98.1
Q ss_pred ccCcCCCcEEecCC---CCeEeCCCccCCCeEEEEEecCCCChhHHHH-HHHHHHhHHHHHHcCC-EEEEEeCCCHHHHH
Q 027245 71 TKNLLDTVKVYDVN---GNAIPISDLWKDRKAVVAFARHFGCVLCRKR-ADYLAAKKDVMDASGV-ALVLIGPGSVEQAR 145 (226)
Q Consensus 71 ~g~~apdf~L~D~~---G~~v~Lsdl~~~~~vVVvF~R~~~Cp~C~~e-l~~L~~~~~~l~~~Gv-~lVaIs~~~~~~i~ 145 (226)
+|+++|+|++.+.+ |+.++|+++++++++||+|||+.|||.|..| ++.|++.+++|++.|+ .|++|+.++++..+
T Consensus 1 vG~~aPdF~l~~~~~~~g~~v~L~~~~~gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g~~~V~~iS~D~~~~~~ 80 (155)
T cd03013 1 VGDKLPNVTLFEYVPGPPNPVNLSELFKGKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVDEVICVSVNDPFVMK 80 (155)
T ss_pred CCCcCCCeEeeeeccCCCceeeHHHHhCCCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCCCCEEEEEECCCHHHHH
Confidence 58999999999985 9999999976778999999999999999999 9999999999999999 69999999999999
Q ss_pred HHHHHcCC--ceeEEecCChHHHHHcCCccc
Q 027245 146 TFSEQTKF--KGEVYADPNHSSYEALSFVSG 174 (226)
Q Consensus 146 ~f~~~~~~--pfpll~Dp~~~ly~alGv~~~ 174 (226)
+|+++.++ +||+++|+++++.++||+...
T Consensus 81 ~~~~~~~~~~~f~lLsD~~~~~~~~ygv~~~ 111 (155)
T cd03013 81 AWGKALGAKDKIRFLADGNGEFTKALGLTLD 111 (155)
T ss_pred HHHHhhCCCCcEEEEECCCHHHHHHcCCCcc
Confidence 99999998 899999999999999999753
No 5
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=99.84 E-value=1.6e-20 Score=149.94 Aligned_cols=104 Identities=16% Similarity=0.200 Sum_probs=97.3
Q ss_pred cccCcCCCcEEecCCCCeEeCCCccCCCeEEEEEecCCCChhHHHHHHHHHHhHHHHHHcCCEEEEEeCCCHHHHHHHHH
Q 027245 70 DTKNLLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSE 149 (226)
Q Consensus 70 ~~g~~apdf~L~D~~G~~v~Lsdl~~~~~vVVvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs~~~~~~i~~f~~ 149 (226)
++|+.+|+|++.|.+|+.++++++.+++++||+|||+.|||.|.+++++|++.++++++.|+++|+|+.++++.+++|++
T Consensus 2 ~~G~~~p~~~l~~~~g~~v~l~~~~g~k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~ 81 (149)
T cd03018 2 EVGDKAPDFELPDQNGQEVRLSEFRGRKPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISVDSPFSLRAWAE 81 (149)
T ss_pred CCCCcCCCcEecCCCCCEEeHHHHcCCCeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEecCCCHHHHHHHHH
Confidence 57999999999999999999999753378888899999999999999999999999999999999999999999999999
Q ss_pred HcCCceeEEecCC--hHHHHHcCCcc
Q 027245 150 QTKFKGEVYADPN--HSSYEALSFVS 173 (226)
Q Consensus 150 ~~~~pfpll~Dp~--~~ly~alGv~~ 173 (226)
+++++|++++|++ +++++.||+..
T Consensus 82 ~~~~~~~~~~D~~~~~~~~~~~g~~~ 107 (149)
T cd03018 82 ENGLTFPLLSDFWPHGEVAKAYGVFD 107 (149)
T ss_pred hcCCCceEecCCCchhHHHHHhCCcc
Confidence 9999999999988 99999999874
No 6
>KOG4498 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.83 E-value=5.5e-21 Score=159.92 Aligned_cols=167 Identities=34% Similarity=0.559 Sum_probs=131.8
Q ss_pred ccCCCCceeecccCCCCCCCCccccCcCCCcEEecCCCCeEeCCCccCCCeEEEEEecCCCChhHHHHHHHHHHhHHHHH
Q 027245 48 SPRRPSHVIASAVSESPPSVSEDTKNLLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMD 127 (226)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~g~~apdf~L~D~~G~~v~Lsdl~~~~~vVVvF~R~~~Cp~C~~el~~L~~~~~~l~ 127 (226)
.|.++.+.++|+++.-. +.+..++...+ .|..|+.|++.+||+++++||.|.|+++|..|++++.+|.++.+-++
T Consensus 7 ~p~t~~~l~~s~i~pa~--sgp~~~q~~a~---l~~rg~~vp~~~L~~~~~avV~~vRrpgCvlCR~~aadLa~l~~~ld 81 (197)
T KOG4498|consen 7 APSTRLPLIASTIVPAR--SGPMIGQLPAN---LDSRGESVPVTSLFKERSAVVAFVRRPGCVLCREEAADLASLKDLLD 81 (197)
T ss_pred CchhhhhHHHhhccccc--CCccccccchh---hhhcCceeehHHhhhcCCeEEEEeccCcEEEeHHHHHHHHHHHHHHH
Confidence 44445455566544332 33333433323 78899999999999999999999999999999999999999999999
Q ss_pred HcCCEEEEEeCCCHHHHHHHHHHcCCceeEEecCChHHHHHcCCccccceeecchhhHHHHHHHHhhhcccccccccCCc
Q 027245 128 ASGVALVLIGPGSVEQARTFSEQTKFKGEVYADPNHSSYEALSFVSGVLVTFTPKAGLKIIQSYMEGYRQDWKLSFERDT 207 (226)
Q Consensus 128 ~~Gv~lVaIs~~~~~~i~~f~~~~~~pfpll~Dp~~~ly~alGv~~~~~~t~~p~a~~~~~~~~~~G~r~~w~~~~~GD~ 207 (226)
++||.+|+|++++..+...|++++.+..+||.||++.+|+.+++++.....+.+..+...+++...|+. ..++||.
T Consensus 82 ~~Gv~Li~vg~g~~~~~~~f~~q~~f~gevylD~~~~~Y~~le~k~~~~g~l~~g~~~~~~Ka~~~gv~----gn~~gd~ 157 (197)
T KOG4498|consen 82 ELGVVLIAVGPGSHVQFEDFWDQTYFSGEVYLDPHRGFYKPLEFKRAEMGFLRPGTDAAAVKAKAVGVE----GNLEGDG 157 (197)
T ss_pred HhCCEEEEEeccceeecchhhcccCcceeEEEcCccceechhhhhcccccccccccHHHHHHHhhcccC----CCcccCh
Confidence 999999999999999999999999999999999999999999999975444455666666677655543 2368999
Q ss_pred cccCccc--ccCc-eEEEE
Q 027245 208 VSRGGWI--KKLG-MIQIF 223 (226)
Q Consensus 208 ~Q~GG~~--q~gg-~~~~~ 223 (226)
.|+||.+ -+|+ -+.++
T Consensus 158 ~~~gG~~~V~~G~~il~~h 176 (197)
T KOG4498|consen 158 LLSGGVLVVGRGKKILFIH 176 (197)
T ss_pred HHhCCeEEEecCCeEEEEE
Confidence 9999988 4443 33443
No 7
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=99.82 E-value=9.1e-20 Score=155.23 Aligned_cols=102 Identities=16% Similarity=0.169 Sum_probs=92.7
Q ss_pred ccCcCCCcEEecCCCCeEeCCCccCCCeEEEEEecCCCChhHHHHHHHHHHhHHHHHHcCCEEEEEeCCCHHHHHHHHHH
Q 027245 71 TKNLLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQ 150 (226)
Q Consensus 71 ~g~~apdf~L~D~~G~~v~Lsdl~~~~~vVVvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs~~~~~~i~~f~~~ 150 (226)
+|+.+|+|++.|.+| .++|+++.+++++||+|||+.|||.|..|+++|++.+++|++.|++|++|+.|+.+..++|.+.
T Consensus 1 vG~~aP~F~~~~~~g-~~~l~d~~g~k~vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D~~~~~~~~~~~ 79 (203)
T cd03016 1 LGDTAPNFEADTTHG-PIKFHDYLGDSWGILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVDSVESHIKWIED 79 (203)
T ss_pred CcCCCCCeEEecCCC-cEeHHHHcCCCEEEEEEecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHhh
Confidence 489999999999988 5899998544678899999999999999999999999999999999999999998877777765
Q ss_pred ------cCCceeEEecCChHHHHHcCCcc
Q 027245 151 ------TKFKGEVYADPNHSSYEALSFVS 173 (226)
Q Consensus 151 ------~~~pfpll~Dp~~~ly~alGv~~ 173 (226)
.+++||+++|+++.++++||+..
T Consensus 80 i~~~~~~~~~fpil~D~~~~ia~~yg~~~ 108 (203)
T cd03016 80 IEEYTGVEIPFPIIADPDREVAKLLGMID 108 (203)
T ss_pred HHHhcCCCCceeEEECchHHHHHHcCCcc
Confidence 68999999999999999999863
No 8
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=99.81 E-value=2e-19 Score=145.25 Aligned_cols=106 Identities=17% Similarity=0.258 Sum_probs=96.6
Q ss_pred CCccccCcCCCcEEecCCCCeEeCCCccCCCeEEEEEecCCCChhHHHHHHHHHHhHHHHHHcCCEEEEEeCCCHHHHHH
Q 027245 67 VSEDTKNLLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQART 146 (226)
Q Consensus 67 ~~~~~g~~apdf~L~D~~G~~v~Lsdl~~~~~vVVvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs~~~~~~i~~ 146 (226)
....+|+.+|+|++.|.+|+.++|+++ +++++||.|++..|||.|..+++.|++.++++++.|+++|+|+.|+.+.+++
T Consensus 2 ~~~~~g~~~p~f~l~~~~G~~~~l~~~-~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d~~~~~~~ 80 (154)
T PRK09437 2 NPLKAGDIAPKFSLPDQDGEQVSLTDF-QGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGISTDKPEKLSR 80 (154)
T ss_pred CcCCCCCcCCCcEeeCCCCCEEeHHHh-CCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHH
Confidence 456789999999999999999999996 5666666666667999999999999999999999999999999999999999
Q ss_pred HHHHcCCceeEEecCChHHHHHcCCcc
Q 027245 147 FSEQTKFKGEVYADPNHSSYEALSFVS 173 (226)
Q Consensus 147 f~~~~~~pfpll~Dp~~~ly~alGv~~ 173 (226)
|+++++++|+++.|+++.+.++||+..
T Consensus 81 ~~~~~~~~~~~l~D~~~~~~~~~gv~~ 107 (154)
T PRK09437 81 FAEKELLNFTLLSDEDHQVAEQFGVWG 107 (154)
T ss_pred HHHHhCCCCeEEECCCchHHHHhCCCc
Confidence 999999999999999999999999853
No 9
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=99.81 E-value=1.2e-19 Score=152.49 Aligned_cols=102 Identities=16% Similarity=0.192 Sum_probs=92.2
Q ss_pred cccCcCCCcEEec-CCCC--eEeCCCccCCCeEEEEEecCCCChhHHHHHHHHHHhHHHHHHcCCEEEEEeCCCHHHHHH
Q 027245 70 DTKNLLDTVKVYD-VNGN--AIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQART 146 (226)
Q Consensus 70 ~~g~~apdf~L~D-~~G~--~v~Lsdl~~~~~vVVvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs~~~~~~i~~ 146 (226)
.+|+.+|+|++.| .+|+ .++++++ +++++||+|||+.|||.|+.|+++|++.+++|++.|++||+|+.++.+.+++
T Consensus 3 ~~G~~aP~f~l~~~~~g~~~~~sl~d~-~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS~D~~~~~~~ 81 (187)
T TIGR03137 3 LINTEIKPFKATAYHNGEFVEVTDEDV-KGKWSVFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSVSTDTHFVHKA 81 (187)
T ss_pred ccCCcCCCcEeeeccCCceeEecHHHH-CCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEEEeCCCHHHHHH
Confidence 5799999999999 6787 6788786 5678888888899999999999999999999999999999999999988888
Q ss_pred HHHHc----CCceeEEecCChHHHHHcCCc
Q 027245 147 FSEQT----KFKGEVYADPNHSSYEALSFV 172 (226)
Q Consensus 147 f~~~~----~~pfpll~Dp~~~ly~alGv~ 172 (226)
|++.. +++||+++|+++++.+.||+.
T Consensus 82 ~~~~~~~~~~l~fpllsD~~~~~a~~~gv~ 111 (187)
T TIGR03137 82 WHDTSEAIGKITYPMLGDPTGVLTRNFGVL 111 (187)
T ss_pred HHhhhhhccCcceeEEECCccHHHHHhCCc
Confidence 88764 699999999999999999986
No 10
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=99.81 E-value=1.9e-19 Score=142.05 Aligned_cols=101 Identities=21% Similarity=0.285 Sum_probs=93.5
Q ss_pred CcCCCcEEecCCCCeEeCCCccCCCeEEEEEecCCCChhHHHHHHHHHHhHHHHHHcCCEEEEEeCCCHHHHHHHHHHcC
Q 027245 73 NLLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTK 152 (226)
Q Consensus 73 ~~apdf~L~D~~G~~v~Lsdl~~~~~vVVvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs~~~~~~i~~f~~~~~ 152 (226)
+.+|+|++.|.+|+.++++++ +++++||.|+++.|||.|..+++.|++.++++++.|+.+|+|+.++.+.+++|+++++
T Consensus 1 ~~~p~f~l~~~~g~~~~l~~~-~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~ 79 (140)
T cd03017 1 DKAPDFTLPDQDGETVSLSDL-RGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPDSVESHAKFAEKYG 79 (140)
T ss_pred CCCCCccccCCCCCEEeHHHh-CCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhC
Confidence 578999999999999999997 4666777666689999999999999999999999999999999999999999999999
Q ss_pred CceeEEecCChHHHHHcCCccc
Q 027245 153 FKGEVYADPNHSSYEALSFVSG 174 (226)
Q Consensus 153 ~pfpll~Dp~~~ly~alGv~~~ 174 (226)
++|++++|+++.++++||+...
T Consensus 80 ~~~~~l~D~~~~~~~~~gv~~~ 101 (140)
T cd03017 80 LPFPLLSDPDGKLAKAYGVWGE 101 (140)
T ss_pred CCceEEECCccHHHHHhCCccc
Confidence 9999999999999999998764
No 11
>PRK13599 putative peroxiredoxin; Provisional
Probab=99.81 E-value=1.8e-19 Score=155.34 Aligned_cols=102 Identities=14% Similarity=0.035 Sum_probs=92.5
Q ss_pred cccCcCCCcEEecCCCCeEeCCCccCCCeEEEEEecCCCChhHHHHHHHHHHhHHHHHHcCCEEEEEeCCCHHHHHHHHH
Q 027245 70 DTKNLLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSE 149 (226)
Q Consensus 70 ~~g~~apdf~L~D~~G~~v~Lsdl~~~~~vVVvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs~~~~~~i~~f~~ 149 (226)
.+|+.+|+|++.+.+|+.+.++++ +++++||+|||+.|||.|..|++.|++++++|++.|++||+||.|+.+..++|++
T Consensus 3 ~~Gd~aPdF~l~t~~G~~~~~~~~-~Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~gv~vigIS~D~~~~~~~w~~ 81 (215)
T PRK13599 3 LLGEKFPSMEVVTTQGVKRLPEDY-AGKWFVLFSHPADFTPVCTTEFVEFARKANDFKELNTELIGLSVDQVFSHIKWVE 81 (215)
T ss_pred CCCCCCCCCEeECCCCcEecHHHH-CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHH
Confidence 579999999999999998777775 5677889999999999999999999999999999999999999999887777665
Q ss_pred ------HcCCceeEEecCChHHHHHcCCc
Q 027245 150 ------QTKFKGEVYADPNHSSYEALSFV 172 (226)
Q Consensus 150 ------~~~~pfpll~Dp~~~ly~alGv~ 172 (226)
..+++|||++|+++++.++|||.
T Consensus 82 ~i~~~~~~~i~fPil~D~~~~va~~yg~~ 110 (215)
T PRK13599 82 WIKDNTNIAIPFPVIADDLGKVSNQLGMI 110 (215)
T ss_pred hHHHhcCCCCceeEEECCCchHHHHcCCC
Confidence 34789999999999999999984
No 12
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=99.80 E-value=4.1e-19 Score=141.72 Aligned_cols=101 Identities=23% Similarity=0.346 Sum_probs=89.9
Q ss_pred cccCcCCCcEEec--CCCCeEeCCCccCCCeEEEEEecCC-CChhHHHHHHHHHHhHHHHHHcCCEEEEEeCCCHHHHHH
Q 027245 70 DTKNLLDTVKVYD--VNGNAIPISDLWKDRKAVVAFARHF-GCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQART 146 (226)
Q Consensus 70 ~~g~~apdf~L~D--~~G~~v~Lsdl~~~~~vVVvF~R~~-~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs~~~~~~i~~ 146 (226)
++|+.+|+|++.| .+|++++|+++ +++ ++|++||+. |||+|+++++.|.++++++.+.|+.+|+|+.++...+++
T Consensus 1 k~G~~~P~~~~~~~~~~g~~~~l~~~-~gk-~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~~~~ 78 (146)
T PF08534_consen 1 KVGDKAPDFSLKDLDLDGKPVSLSDF-KGK-PVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPPVRE 78 (146)
T ss_dssp STTSB--CCEEEEEETTSEEEEGGGG-TTS-EEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHHHHH
T ss_pred CCCCCCCCeEEEeecCCCCEecHHHh-CCC-eEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHHHHH
Confidence 4799999999966 99999999995 454 566667777 999999999999999999999999999999998877999
Q ss_pred HHHHcCCceeEEecCChHHHHHcCCc
Q 027245 147 FSEQTKFKGEVYADPNHSSYEALSFV 172 (226)
Q Consensus 147 f~~~~~~pfpll~Dp~~~ly~alGv~ 172 (226)
|+++++++|+++.|++..+.++||+.
T Consensus 79 ~~~~~~~~~~~~~D~~~~~~~~~~~~ 104 (146)
T PF08534_consen 79 FLKKYGINFPVLSDPDGALAKALGVT 104 (146)
T ss_dssp HHHHTTTTSEEEEETTSHHHHHTTCE
T ss_pred HHHhhCCCceEEechHHHHHHHhCCc
Confidence 99999999999999999999999987
No 13
>PRK13190 putative peroxiredoxin; Provisional
Probab=99.80 E-value=2.5e-19 Score=152.64 Aligned_cols=102 Identities=15% Similarity=0.103 Sum_probs=90.9
Q ss_pred ccccCcCCCcEEecCCCCeEeCCCccCCCeEEEEEecCCCChhHHHHHHHHHHhHHHHHHcCCEEEEEeCCCHHHHHHHH
Q 027245 69 EDTKNLLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFS 148 (226)
Q Consensus 69 ~~~g~~apdf~L~D~~G~~v~Lsdl~~~~~vVVvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs~~~~~~i~~f~ 148 (226)
..+|+.+|+|++.|.+| .++|+++ +++++||+|||+.|||.|..|+++|++.+++|++.|++||+|+.++.+..++|+
T Consensus 2 ~~vG~~aP~F~~~~~~g-~v~l~d~-~gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D~~~~~~~w~ 79 (202)
T PRK13190 2 VKLGQKAPDFTVNTTKG-PIDLSKY-KGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVDSIYSHIAWL 79 (202)
T ss_pred CCCCCCCCCcEEecCCC-cEeHHHh-CCCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHH
Confidence 46799999999999887 7999996 566788889999999999999999999999999999999999999987666655
Q ss_pred ----HHcC--CceeEEecCChHHHHHcCCc
Q 027245 149 ----EQTK--FKGEVYADPNHSSYEALSFV 172 (226)
Q Consensus 149 ----~~~~--~pfpll~Dp~~~ly~alGv~ 172 (226)
++.+ ++||+++|+++++.++||+.
T Consensus 80 ~~~~~~~g~~~~fPll~D~~~~ia~~ygv~ 109 (202)
T PRK13190 80 RDIEERFGIKIPFPVIADIDKELAREYNLI 109 (202)
T ss_pred HhHHHhcCCCceEEEEECCChHHHHHcCCc
Confidence 4555 68999999999999999994
No 14
>PRK13191 putative peroxiredoxin; Provisional
Probab=99.80 E-value=3.1e-19 Score=153.76 Aligned_cols=103 Identities=16% Similarity=0.117 Sum_probs=91.8
Q ss_pred ccccCcCCCcEEecCCCCeEeCCCccCCCeEEEEEecCCCChhHHHHHHHHHHhHHHHHHcCCEEEEEeCCCHHHHHHHH
Q 027245 69 EDTKNLLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFS 148 (226)
Q Consensus 69 ~~~g~~apdf~L~D~~G~~v~Lsdl~~~~~vVVvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs~~~~~~i~~f~ 148 (226)
+.+|+.+|+|++.+.+|+ +.+.+.++++++||+|||+.|||.|..|+++|++.+++|+++|++|++||.|+....++|+
T Consensus 7 ~~iG~~aPdF~l~~~~G~-~~l~~~~~GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g~~VigvS~Ds~~~h~aw~ 85 (215)
T PRK13191 7 PLIGEKFPEMEVITTHGK-IKLPDDYKGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVDSNISHIEWV 85 (215)
T ss_pred ccCCCcCCCCEeecCCCC-EEcHHHhCCCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHH
Confidence 468999999999999997 6666655677888899999999999999999999999999999999999999998777765
Q ss_pred H------HcCCceeEEecCChHHHHHcCCc
Q 027245 149 E------QTKFKGEVYADPNHSSYEALSFV 172 (226)
Q Consensus 149 ~------~~~~pfpll~Dp~~~ly~alGv~ 172 (226)
+ ..+++|||++|+++++.++||+.
T Consensus 86 ~~~~~~~~~~i~fPllsD~~~~ia~~ygv~ 115 (215)
T PRK13191 86 MWIEKNLKVEVPFPIIADPMGNVAKRLGMI 115 (215)
T ss_pred hhHHHhcCCCCceEEEECCchHHHHHcCCc
Confidence 4 24689999999999999999985
No 15
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=99.80 E-value=3.3e-19 Score=157.80 Aligned_cols=109 Identities=15% Similarity=0.184 Sum_probs=96.9
Q ss_pred CCCCccccCcCCCcEEec-CCC--CeEeCCCccCCCeEEEEEecCCCChhHHHHHHHHHHhHHHHHHcCCEEEEEeCCCH
Q 027245 65 PSVSEDTKNLLDTVKVYD-VNG--NAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSV 141 (226)
Q Consensus 65 ~~~~~~~g~~apdf~L~D-~~G--~~v~Lsdl~~~~~vVVvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs~~~~ 141 (226)
......+|+++|+|++.+ .+| +.++|+++++++++||+|||+.|||.|..|+++|++.+++|++.|++|++|+.|++
T Consensus 64 ~~~~~~vGd~aPdF~l~~~~~g~~~~vsLsd~~kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv~VigIS~Ds~ 143 (261)
T PTZ00137 64 TVTSSLVGKLMPSFKGTALLNDDLVQFNSSDYFKDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGVSVDSP 143 (261)
T ss_pred ccccccCCCCCCCCEeecccCCCceEEeHHHHcCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCH
Confidence 344457999999999987 455 46999998778899999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHH-------cCCceeEEecCChHHHHHcCCcc
Q 027245 142 EQARTFSEQ-------TKFKGEVYADPNHSSYEALSFVS 173 (226)
Q Consensus 142 ~~i~~f~~~-------~~~pfpll~Dp~~~ly~alGv~~ 173 (226)
+..++|++. .+++||+++|+++++.++||+..
T Consensus 144 ~~h~aw~~~~~~~~g~~~l~fPlLsD~~~~iakayGv~~ 182 (261)
T PTZ00137 144 FSHKAWKELDVRQGGVSPLKFPLFSDISREVSKSFGLLR 182 (261)
T ss_pred HHHHHHHhhhhhhccccCcceEEEEcCChHHHHHcCCCC
Confidence 778888764 57999999999999999999853
No 16
>PRK13189 peroxiredoxin; Provisional
Probab=99.80 E-value=3.9e-19 Score=153.75 Aligned_cols=104 Identities=13% Similarity=0.086 Sum_probs=93.9
Q ss_pred CccccCcCCCcEEecCCCCeEeCCCccCCCeEEEEEecCCCChhHHHHHHHHHHhHHHHHHcCCEEEEEeCCCHHHHHHH
Q 027245 68 SEDTKNLLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTF 147 (226)
Q Consensus 68 ~~~~g~~apdf~L~D~~G~~v~Lsdl~~~~~vVVvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs~~~~~~i~~f 147 (226)
...+|+.+|+|++.+.+|+ +.+.+.++++++||+|||+.|||.|..|+++|++.+++|++.|++||+||.|+....++|
T Consensus 8 ~~~vG~~aPdF~~~~~~g~-~~l~d~~~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~D~~~~h~aw 86 (222)
T PRK13189 8 MPLIGDKFPEFEVKTTHGP-IKLPDDYKGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSIDQVFSHIKW 86 (222)
T ss_pred cccCCCcCCCcEeEcCCCC-EeeHHHhCCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHH
Confidence 4568999999999999885 788886677789999999999999999999999999999999999999999998877777
Q ss_pred HHH------cCCceeEEecCChHHHHHcCCc
Q 027245 148 SEQ------TKFKGEVYADPNHSSYEALSFV 172 (226)
Q Consensus 148 ~~~------~~~pfpll~Dp~~~ly~alGv~ 172 (226)
++. .+++|||++|+++.+.++||+.
T Consensus 87 ~~~~~~~~g~~i~fPllsD~~~~ia~~ygv~ 117 (222)
T PRK13189 87 VEWIKEKLGVEIEFPIIADDRGEIAKKLGMI 117 (222)
T ss_pred HHhHHHhcCcCcceeEEEcCccHHHHHhCCC
Confidence 764 3589999999999999999986
No 17
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=99.79 E-value=9.2e-19 Score=137.94 Aligned_cols=101 Identities=13% Similarity=0.167 Sum_probs=94.3
Q ss_pred cCCCcEEecCCCCeEeCCCccCCCeEEEEEecCCCChhHHHHHHHHHHhHHHHHHcCCEEEEEeCCCHHHHHHHHHHc-C
Q 027245 74 LLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQT-K 152 (226)
Q Consensus 74 ~apdf~L~D~~G~~v~Lsdl~~~~~vVVvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs~~~~~~i~~f~~~~-~ 152 (226)
.+|+|++.|.+|++++++++ +++++||+|++..||+.|..+++.|++.++++++.|+.+|+|+.++++.+++|+++. +
T Consensus 1 ~~p~f~l~~~~g~~~~l~~~-~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d~~~~~~~~~~~~~~ 79 (140)
T cd02971 1 KAPDFTLPATDGGEVSLSDF-KGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVDSPFSHKAWAEKEGG 79 (140)
T ss_pred CCCCceeccCCCcEEehHHh-CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhcccC
Confidence 47999999999999999998 577788888889999999999999999999999999999999999999999999999 9
Q ss_pred CceeEEecCChHHHHHcCCcccc
Q 027245 153 FKGEVYADPNHSSYEALSFVSGV 175 (226)
Q Consensus 153 ~pfpll~Dp~~~ly~alGv~~~~ 175 (226)
.+|++++|+++.+++.||+....
T Consensus 80 ~~~~~l~D~~~~~~~~~g~~~~~ 102 (140)
T cd02971 80 LNFPLLSDPDGEFAKAYGVLIEK 102 (140)
T ss_pred CCceEEECCChHHHHHcCCcccc
Confidence 99999999999999999998654
No 18
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=99.78 E-value=1.3e-18 Score=143.89 Aligned_cols=101 Identities=14% Similarity=0.119 Sum_probs=91.3
Q ss_pred ccCcCCCcEEecCCC----CeEeCCCccCCCeEEEEEecCCCChhHHHHHHHHHHhHHHHHHcCCEEEEEeCCCHHHHHH
Q 027245 71 TKNLLDTVKVYDVNG----NAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQART 146 (226)
Q Consensus 71 ~g~~apdf~L~D~~G----~~v~Lsdl~~~~~vVVvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs~~~~~~i~~ 146 (226)
+|+.+|+|++.|.+| +.++|+++ +++++||+|+++.|||.|..+++.|++.+++|++.|+.||+|+.++.+..++
T Consensus 1 vG~~aP~f~~~~~~g~~~~~~~~l~~~-~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d~~~~~~~ 79 (173)
T cd03015 1 VGKKAPDFKATAVVPNGEFKEISLSDY-KGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTDSHFSHLA 79 (173)
T ss_pred CCCcCCCCEeecccCCCCceEEehHHh-CCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecCCHHHHHH
Confidence 589999999999887 79999997 5667777777799999999999999999999999999999999999877778
Q ss_pred HHHH-------cCCceeEEecCChHHHHHcCCc
Q 027245 147 FSEQ-------TKFKGEVYADPNHSSYEALSFV 172 (226)
Q Consensus 147 f~~~-------~~~pfpll~Dp~~~ly~alGv~ 172 (226)
|.+. .+++|++++|+++.+++.||+.
T Consensus 80 ~~~~~~~~~~~~~~~f~~l~D~~~~~~~~~gv~ 112 (173)
T cd03015 80 WRNTPRKEGGLGKINFPLLADPKKKISRDYGVL 112 (173)
T ss_pred HHHhhhhhCCccCcceeEEECCchhHHHHhCCc
Confidence 8776 4699999999999999999986
No 19
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=99.78 E-value=1.9e-18 Score=146.10 Aligned_cols=103 Identities=13% Similarity=0.103 Sum_probs=92.5
Q ss_pred ccccCcCCCcEEec---CCCCeEeCCCccCCCeEEEEEecCCCChhHHHHHHHHHHhHHHHHHcCCEEEEEeCCCHHHHH
Q 027245 69 EDTKNLLDTVKVYD---VNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQAR 145 (226)
Q Consensus 69 ~~~g~~apdf~L~D---~~G~~v~Lsdl~~~~~vVVvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs~~~~~~i~ 145 (226)
..+|.++|+|++.- -+...++|+++ +++++||+||++.|||.|..|+++|++.+++|++.|++||+||.|+++..+
T Consensus 2 ~~~~~~~p~f~~~~~~~g~~~~v~L~d~-~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g~~vigIS~D~~~~~~ 80 (187)
T PRK10382 2 SLINTKIKPFKNQAFKNGEFIEVTEKDT-EGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDTHFTHK 80 (187)
T ss_pred CccCCcCCCcEEEEEeCCcceEEEHHHh-CCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHH
Confidence 35799999999865 44567788886 567899999999999999999999999999999999999999999999999
Q ss_pred HHHHH----cCCceeEEecCChHHHHHcCCc
Q 027245 146 TFSEQ----TKFKGEVYADPNHSSYEALSFV 172 (226)
Q Consensus 146 ~f~~~----~~~pfpll~Dp~~~ly~alGv~ 172 (226)
+|++. .+++||+++|+++.+.++||+.
T Consensus 81 a~~~~~~~~~~l~fpllsD~~~~ia~~ygv~ 111 (187)
T PRK10382 81 AWHSSSETIAKIKYAMIGDPTGALTRNFDNM 111 (187)
T ss_pred HHHHhhccccCCceeEEEcCchHHHHHcCCC
Confidence 99976 3899999999999999999984
No 20
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=99.77 E-value=2.3e-18 Score=142.31 Aligned_cols=102 Identities=9% Similarity=0.079 Sum_probs=88.8
Q ss_pred ccccCcCCCcEEecCCCCeEeCCCccCCCeEEEEEecCCC-ChhHHHHHHHHHHhHHHHHHcCCEEEEEeCCCHHHHHHH
Q 027245 69 EDTKNLLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFG-CVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTF 147 (226)
Q Consensus 69 ~~~g~~apdf~L~D~~G~~v~Lsdl~~~~~vVVvF~R~~~-Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs~~~~~~i~~f 147 (226)
..+|+.+|+|++.|.+|+.++|+++ ++++ +|++||..| ||+|..|+++|++.++++ .|++||+|+.|+++.+++|
T Consensus 18 ~~~G~~~P~f~l~~~~g~~v~l~~~-~Gk~-vvl~f~~s~~cp~C~~e~~~l~~~~~~~--~~~~vv~vs~D~~~~~~~f 93 (167)
T PRK00522 18 PQVGDKAPDFTLVANDLSDVSLADF-AGKR-KVLNIFPSIDTGVCATSVRKFNQEAAEL--DNTVVLCISADLPFAQKRF 93 (167)
T ss_pred CCCCCCCCCeEEEcCCCcEEehHHh-CCCE-EEEEEEcCCCCCccHHHHHHHHHHHHHc--CCcEEEEEeCCCHHHHHHH
Confidence 4679999999999999999999997 4554 555555555 999999999999999998 3999999999999889999
Q ss_pred HHHcCCc-eeEEec-CChHHHHHcCCccc
Q 027245 148 SEQTKFK-GEVYAD-PNHSSYEALSFVSG 174 (226)
Q Consensus 148 ~~~~~~p-fpll~D-p~~~ly~alGv~~~ 174 (226)
+++++++ +++++| +++.+.++||+...
T Consensus 94 ~~~~~~~~~~~lsD~~~~~~~~~~gv~~~ 122 (167)
T PRK00522 94 CGAEGLENVITLSDFRDHSFGKAYGVAIA 122 (167)
T ss_pred HHhCCCCCceEeecCCccHHHHHhCCeec
Confidence 9999998 799999 56699999998643
No 21
>KOG0855 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=5e-19 Score=146.10 Aligned_cols=111 Identities=12% Similarity=0.217 Sum_probs=105.5
Q ss_pred CccccCcCCCcEEecCCCCeEeCCCccCCCeEEEEEecCCCChhHHHHHHHHHHhHHHHHHcCCEEEEEeCCCHHHHHHH
Q 027245 68 SEDTKNLLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTF 147 (226)
Q Consensus 68 ~~~~g~~apdf~L~D~~G~~v~Lsdl~~~~~vVVvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs~~~~~~i~~f 147 (226)
..+.|+.+|||+|+|+||.+|+|.++-+.+++|++||++.-.|.|.++++.+++.|++|++.|++|++++.|+....++|
T Consensus 62 ~v~~Gd~iPD~tL~dedg~sisLkkit~nk~vV~f~YP~asTPGCTkQaCgFRDnY~k~kka~aeV~GlS~D~s~sqKaF 141 (211)
T KOG0855|consen 62 KVNKGDAIPDFTLKDEDGKSISLKKITGNKPVVLFFYPAASTPGCTKQACGFRDNYEKFKKAGAEVIGLSGDDSASQKAF 141 (211)
T ss_pred eeecCCcCCCcccccCCCCeeeeeeecCCCcEEEEEeccCCCCCcccccccccccHHHHhhcCceEEeeccCchHHHHHh
Confidence 57899999999999999999999999777799999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCceeEEecCChHHHHHcCCcccccee
Q 027245 148 SEQTKFKGEVYADPNHSSYEALSFVSGVLVT 178 (226)
Q Consensus 148 ~~~~~~pfpll~Dp~~~ly~alGv~~~~~~t 178 (226)
+.+.++||.+++||.+++.+.||....+...
T Consensus 142 ~sKqnlPYhLLSDpk~e~ik~lGa~k~p~gg 172 (211)
T KOG0855|consen 142 ASKQNLPYHLLSDPKNEVIKDLGAPKDPFGG 172 (211)
T ss_pred hhhccCCeeeecCcchhHHHHhCCCCCCCCC
Confidence 9999999999999999999999998876544
No 22
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=99.77 E-value=2.3e-18 Score=137.14 Aligned_cols=100 Identities=8% Similarity=0.132 Sum_probs=89.3
Q ss_pred ccCcCCCcEEecCCCCeEeCCCccCCCeEEEEEecCCCChhHHHHHHHHHHhHHHHHHcCCEEEEEeCCCHHHHHHHHHH
Q 027245 71 TKNLLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQ 150 (226)
Q Consensus 71 ~g~~apdf~L~D~~G~~v~Lsdl~~~~~vVVvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs~~~~~~i~~f~~~ 150 (226)
+|+.+|+|++.|.+|++++|+++ +++++||.|++..|||+|+.+++.|++.++++ .|+.+|+|+.++.+.+++|.++
T Consensus 2 ~G~~aP~f~l~~~~g~~~~l~~~-~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~--~~~~vi~Is~d~~~~~~~~~~~ 78 (143)
T cd03014 2 VGDKAPDFTLVTSDLSEVSLADF-AGKVKVISVFPSIDTPVCATQTKRFNKEAAKL--DNTVVLTISADLPFAQKRWCGA 78 (143)
T ss_pred CCCCCCCcEEECCCCcEEeHHHh-CCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhc--CCCEEEEEECCCHHHHHHHHHh
Confidence 68999999999999999999997 56666666666666899999999999999997 3999999999999889999999
Q ss_pred cCC-ceeEEecCC-hHHHHHcCCcc
Q 027245 151 TKF-KGEVYADPN-HSSYEALSFVS 173 (226)
Q Consensus 151 ~~~-pfpll~Dp~-~~ly~alGv~~ 173 (226)
.++ .|++++|++ +++.++||+..
T Consensus 79 ~~~~~~~~l~D~~~~~~~~~~gv~~ 103 (143)
T cd03014 79 EGVDNVTTLSDFRDHSFGKAYGVLI 103 (143)
T ss_pred cCCCCceEeecCcccHHHHHhCCee
Confidence 997 799999996 99999999964
No 23
>PTZ00056 glutathione peroxidase; Provisional
Probab=99.76 E-value=4.4e-18 Score=144.83 Aligned_cols=89 Identities=19% Similarity=0.380 Sum_probs=81.9
Q ss_pred cccCcCCCcEEecCCCCeEeCCCccCCCeEEEEEecCCCChhHHHHHHHHHHhHHHHHHcCCEEEEEeC--------CCH
Q 027245 70 DTKNLLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGP--------GSV 141 (226)
Q Consensus 70 ~~g~~apdf~L~D~~G~~v~Lsdl~~~~~vVVvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs~--------~~~ 141 (226)
+.+..+|+|++.|.+|+.++|+++ + +++||++||++|||+|++|++.|+++++++++.|+.||+|++ ++.
T Consensus 14 ~~~~~~pdf~l~d~~G~~vsL~~~-k-Gkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~~~~~~~e~d~~ 91 (199)
T PTZ00056 14 ELRKSIYDYTVKTLEGTTVPMSSL-K-NKVLMITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPTSQFLNQEFPNT 91 (199)
T ss_pred hcCCCCCceEEECCCCCEEeHHHh-C-CCEEEEEEECCCCCChHHHHHHHHHHHHHHhcCceEEEEecchhccCCCCCCH
Confidence 456789999999999999999997 3 468899999999999999999999999999999999999986 567
Q ss_pred HHHHHHHHHcCCceeEEec
Q 027245 142 EQARTFSEQTKFKGEVYAD 160 (226)
Q Consensus 142 ~~i~~f~~~~~~pfpll~D 160 (226)
+.+++|+++++++||+++|
T Consensus 92 e~~~~f~~~~~~~fpvl~d 110 (199)
T PTZ00056 92 KDIRKFNDKNKIKYNFFEP 110 (199)
T ss_pred HHHHHHHHHcCCCceeeee
Confidence 8999999999999999986
No 24
>PRK15000 peroxidase; Provisional
Probab=99.75 E-value=7.3e-18 Score=143.64 Aligned_cols=103 Identities=13% Similarity=0.058 Sum_probs=88.3
Q ss_pred cccCcCCCcEEecCC--CCe---EeCCCccCCCeEEEEEecCCCChhHHHHHHHHHHhHHHHHHcCCEEEEEeCCCHHHH
Q 027245 70 DTKNLLDTVKVYDVN--GNA---IPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQA 144 (226)
Q Consensus 70 ~~g~~apdf~L~D~~--G~~---v~Lsdl~~~~~vVVvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs~~~~~~i 144 (226)
.+|+.+|+|++.+.. |+. ++|+++++++++||+||++.|||.|..|+++|++.+++|++.|++||+|+.|+.+..
T Consensus 3 ~vg~~aPdF~~~~~~~~g~~~~~~~l~~~~~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vigvS~D~~~~~ 82 (200)
T PRK15000 3 LVTRQAPDFTAAAVLGSGEIVDKFNFKQHTNGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFDSEFVH 82 (200)
T ss_pred cCCCcCCCCEeecccCCCceeeeeeHHHHhCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHH
Confidence 479999999999864 453 456665567788888888899999999999999999999999999999999998777
Q ss_pred HHHHHH----cC---CceeEEecCChHHHHHcCCc
Q 027245 145 RTFSEQ----TK---FKGEVYADPNHSSYEALSFV 172 (226)
Q Consensus 145 ~~f~~~----~~---~pfpll~Dp~~~ly~alGv~ 172 (226)
++|.+. .+ ++||+++|+++++.+.||+.
T Consensus 83 ~~w~~~~~~~~g~~~i~fpllsD~~~~ia~~ygv~ 117 (200)
T PRK15000 83 NAWRNTPVDKGGIGPVKYAMVADVKREIQKAYGIE 117 (200)
T ss_pred HHHHhhHHHhCCccccCceEEECCCcHHHHHcCCc
Confidence 777543 43 69999999999999999986
No 25
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=99.74 E-value=3.1e-18 Score=138.86 Aligned_cols=84 Identities=19% Similarity=0.256 Sum_probs=76.4
Q ss_pred CCCcEEecCCCCeEeCCCccCCCeEEEEEecCCCChhHHHHHHHHHHhHHHHHHcCCEEEEEeC--------CCHHHHHH
Q 027245 75 LDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGP--------GSVEQART 146 (226)
Q Consensus 75 apdf~L~D~~G~~v~Lsdl~~~~~vVVvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs~--------~~~~~i~~ 146 (226)
+|+|++.|.+|++++|+++ + +++||++||++||| |+.|++.|+++++++++.|+.+|+|+. ++.+.+++
T Consensus 2 ~~~f~l~d~~G~~v~l~~~-~-Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~ 78 (152)
T cd00340 2 IYDFSVKDIDGEPVSLSKY-K-GKVLLIVNVASKCG-FTPQYEGLEALYEKYKDRGLVVLGFPCNQFGGQEPGSNEEIKE 78 (152)
T ss_pred cceeEEECCCCCEEeHHHh-C-CCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCCCEEEEEeccCccccCCCCCHHHHHH
Confidence 7899999999999999997 3 46788899999999 999999999999999999999999986 34688999
Q ss_pred HHHH-cCCceeEEecC
Q 027245 147 FSEQ-TKFKGEVYADP 161 (226)
Q Consensus 147 f~~~-~~~pfpll~Dp 161 (226)
|+++ ++++||++.|.
T Consensus 79 f~~~~~~~~fp~~~d~ 94 (152)
T cd00340 79 FCETNYGVTFPMFAKI 94 (152)
T ss_pred HHHHhcCCCceeeeeE
Confidence 9997 89999999874
No 26
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=99.73 E-value=2.6e-17 Score=135.36 Aligned_cols=105 Identities=18% Similarity=0.183 Sum_probs=94.8
Q ss_pred cCcCCCcEEecCCCCeEeCCCccCCCeEEEEEecCCCChhHHHHHHHHHHhHHHHHHcCCEEEEEeCCC--------HHH
Q 027245 72 KNLLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGS--------VEQ 143 (226)
Q Consensus 72 g~~apdf~L~D~~G~~v~Lsdl~~~~~vVVvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs~~~--------~~~ 143 (226)
|+.+|+|++.|.+|+.++|+++. +++++|++||++|||.|..+++.|+++++++++.++.+|+|+.++ ++.
T Consensus 1 g~~~p~f~l~~~~g~~v~l~~~~-~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~~~~~~~d~~~~ 79 (171)
T cd02969 1 GSPAPDFSLPDTDGKTYSLADFA-DGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSNDIEAYPEDSPEN 79 (171)
T ss_pred CCcCCCccccCCCCCEEeHHHHh-CCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCccccccccCHHH
Confidence 67899999999999999999964 446788888899999999999999999999999999999999864 689
Q ss_pred HHHHHHHcCCceeEEecCChHHHHHcCCccccce
Q 027245 144 ARTFSEQTKFKGEVYADPNHSSYEALSFVSGVLV 177 (226)
Q Consensus 144 i~~f~~~~~~pfpll~Dp~~~ly~alGv~~~~~~ 177 (226)
+++|+++++++|+++.|+++.+.+.||+...+..
T Consensus 80 ~~~~~~~~~~~~~~l~D~~~~~~~~~~v~~~P~~ 113 (171)
T cd02969 80 MKAKAKEHGYPFPYLLDETQEVAKAYGAACTPDF 113 (171)
T ss_pred HHHHHHHCCCCceEEECCchHHHHHcCCCcCCcE
Confidence 9999999999999999999999999999765443
No 27
>PTZ00256 glutathione peroxidase; Provisional
Probab=99.73 E-value=1.6e-17 Score=139.07 Aligned_cols=89 Identities=11% Similarity=0.241 Sum_probs=78.4
Q ss_pred ccCcCCCcEEecCCCCeEeCCCccCCCeEEEEEecCCCChhHHHHHHHHHHhHHHHHHcCCEEEEEeCC--------CHH
Q 027245 71 TKNLLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPG--------SVE 142 (226)
Q Consensus 71 ~g~~apdf~L~D~~G~~v~Lsdl~~~~~vVVvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs~~--------~~~ 142 (226)
..+.+|+|++.|.+|++++|+++ +++++||+++|++|||+|++|++.|+++++++++.|+.||+|+++ +.+
T Consensus 16 ~~~~~p~f~l~d~~G~~vsLs~~-~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~~~~~~~~~~~~~ 94 (183)
T PTZ00256 16 PTKSFFEFEAIDIDGQLVQLSKF-KGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQGLEILAFPCNQFMEQEPWDEP 94 (183)
T ss_pred CCCcccceEeEcCCCCEEeHHHh-CCCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhCCcEEEEEecccccccCCCCHH
Confidence 36789999999999999999997 466677777799999999999999999999999999999999964 347
Q ss_pred HHHHHHH-HcCCceeEEec
Q 027245 143 QARTFSE-QTKFKGEVYAD 160 (226)
Q Consensus 143 ~i~~f~~-~~~~pfpll~D 160 (226)
.+++|.+ +++++||++.|
T Consensus 95 ~~~~f~~~~~~~~fpv~~d 113 (183)
T PTZ00256 95 EIKEYVQKKFNVDFPLFQK 113 (183)
T ss_pred HHHHHHHHhcCCCCCCceE
Confidence 7888874 78999999966
No 28
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=99.71 E-value=5.3e-17 Score=137.64 Aligned_cols=104 Identities=11% Similarity=0.039 Sum_probs=90.2
Q ss_pred CccccCcCCCcEEec----CCCCeEeCCCccCCCeEEEEEecCCCChhHHHHHHHHHHhHHHHHHcCCEEEEEeCCCHHH
Q 027245 68 SEDTKNLLDTVKVYD----VNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQ 143 (226)
Q Consensus 68 ~~~~g~~apdf~L~D----~~G~~v~Lsdl~~~~~vVVvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs~~~~~~ 143 (226)
...+|+.+|+|++.+ .+|++++|+++ +++++||+|+++.||+.|..|+.+|++.+++|++.|++||+|+.++...
T Consensus 5 ~~~~G~~aPdF~~~~~~~~~~~~~v~l~d~-~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~IS~d~~~~ 83 (199)
T PTZ00253 5 DAKINHPAPSFEEVALMPNGSFKKISLSSY-KGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLACSMDSEYA 83 (199)
T ss_pred ccccCCcCCCCEeeccccCCCCcEEeHHHH-CCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHH
Confidence 356899999999654 56789999997 5678888888899999999999999999999999999999999999876
Q ss_pred HHHHHHH-------cCCceeEEecCChHHHHHcCCc
Q 027245 144 ARTFSEQ-------TKFKGEVYADPNHSSYEALSFV 172 (226)
Q Consensus 144 i~~f~~~-------~~~pfpll~Dp~~~ly~alGv~ 172 (226)
..+|... .+++||+++|+++++.+.||+.
T Consensus 84 ~~~~~~~~~~~~~~~~~~fpll~D~~~~ia~~ygv~ 119 (199)
T PTZ00253 84 HLQWTLQERKKGGLGTMAIPMLADKTKSIARSYGVL 119 (199)
T ss_pred HHHHHhChHhhCCccccccceEECcHhHHHHHcCCc
Confidence 6666432 1489999999999999999985
No 29
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=99.70 E-value=1.2e-16 Score=139.65 Aligned_cols=89 Identities=17% Similarity=0.275 Sum_probs=80.8
Q ss_pred cccCcCCCcEEecCCCCeEeCCCccCCCeEEEEEecCCCChhHHHHHHHHHHhHHHHHHcCCEEEEEeC--------CCH
Q 027245 70 DTKNLLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGP--------GSV 141 (226)
Q Consensus 70 ~~g~~apdf~L~D~~G~~v~Lsdl~~~~~vVVvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs~--------~~~ 141 (226)
.+|+.+|+|++.|.+|+.++|+++ + +++||++||+.|||+|+.|+++|+++++++++.|+.||+|++ ++.
T Consensus 74 ~~g~~aPdF~l~d~~G~~vsLsd~-k-GK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~d~~~~~e~~s~ 151 (236)
T PLN02399 74 ATEKSVHDFTVKDIDGKDVALSKF-K-GKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSN 151 (236)
T ss_pred hcCCCCCceEEECCCCCEEeHHHh-C-CCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCCcEEEEEecccccccCCCCH
Confidence 578999999999999999999997 3 478888899999999999999999999999999999999996 456
Q ss_pred HHHHHHH-HHcCCceeEEec
Q 027245 142 EQARTFS-EQTKFKGEVYAD 160 (226)
Q Consensus 142 ~~i~~f~-~~~~~pfpll~D 160 (226)
+++++|+ ++++++|||+.|
T Consensus 152 ~ei~~f~~~~~g~~fPvl~~ 171 (236)
T PLN02399 152 PEIKQFACTRFKAEFPIFDK 171 (236)
T ss_pred HHHHHHHHHhcCCCCccccc
Confidence 7899998 688999999964
No 30
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=99.70 E-value=1.8e-16 Score=129.49 Aligned_cols=108 Identities=17% Similarity=0.184 Sum_probs=96.3
Q ss_pred CCccccCcCCCcEEecCCCCeEeCCCccCCCeEEEEEecCCCChhHHHHHHHHHHhHHHHHHcCCEEEEEeCCCH-HHHH
Q 027245 67 VSEDTKNLLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSV-EQAR 145 (226)
Q Consensus 67 ~~~~~g~~apdf~L~D~~G~~v~Lsdl~~~~~vVVvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs~~~~-~~i~ 145 (226)
....+|+.+|+|++.|.+|+.++++++ ++ +.++++||+.||+.|+.+++.|.+.++++.+.++++++|+.++. +.++
T Consensus 33 ~~~~~g~~~p~~~~~~~~g~~~~l~~~-~~-k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~~~~~ 110 (173)
T PRK03147 33 EKVQVGKEAPNFVLTDLEGKKIELKDL-KG-KGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETELAVK 110 (173)
T ss_pred cccCCCCCCCCcEeecCCCCEEeHHHc-CC-CEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCHHHHH
Confidence 456789999999999999999999996 44 55666777999999999999999999999999999999999765 6889
Q ss_pred HHHHHcCCceeEEecCChHHHHHcCCccccc
Q 027245 146 TFSEQTKFKGEVYADPNHSSYEALSFVSGVL 176 (226)
Q Consensus 146 ~f~~~~~~pfpll~Dp~~~ly~alGv~~~~~ 176 (226)
+|+++++++|+++.|+++.+.+.||+...+.
T Consensus 111 ~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~ 141 (173)
T PRK03147 111 NFVNRYGLTFPVAIDKGRQVIDAYGVGPLPT 141 (173)
T ss_pred HHHHHhCCCceEEECCcchHHHHcCCCCcCe
Confidence 9999999999999999999999999976543
No 31
>PLN02412 probable glutathione peroxidase
Probab=99.69 E-value=5.4e-17 Score=134.18 Aligned_cols=87 Identities=15% Similarity=0.204 Sum_probs=76.4
Q ss_pred cCcCCCcEEecCCCCeEeCCCccCCCeEEEEEecCCCChhHHHHHHHHHHhHHHHHHcCCEEEEEeCC--------CHHH
Q 027245 72 KNLLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPG--------SVEQ 143 (226)
Q Consensus 72 g~~apdf~L~D~~G~~v~Lsdl~~~~~vVVvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs~~--------~~~~ 143 (226)
-+.+|+|++.|.+|+.++|+++ .+++||++||++|||.|++|++.|+++++++++.|+.||+|+++ +.++
T Consensus 6 ~~~~pdf~l~d~~G~~v~l~~~--~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~~~~~~~~~~~~~~ 83 (167)
T PLN02412 6 PKSIYDFTVKDIGGNDVSLNQY--KGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQGFEILAFPCNQFLGQEPGSNEE 83 (167)
T ss_pred CCCCCceEEECCCCCEEeHHHh--CCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhCCcEEEEecccccccCCCCCHHH
Confidence 3779999999999999999997 34788888999999999999999999999999999999999973 4555
Q ss_pred H-HHHHHHcCCceeEEec
Q 027245 144 A-RTFSEQTKFKGEVYAD 160 (226)
Q Consensus 144 i-~~f~~~~~~pfpll~D 160 (226)
+ +.|+++++++||++.|
T Consensus 84 ~~~~~~~~~~~~fpvl~~ 101 (167)
T PLN02412 84 IQQTVCTRFKAEFPIFDK 101 (167)
T ss_pred HHHHHHHccCCCCceEeE
Confidence 5 4557999999999873
No 32
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=99.69 E-value=2.9e-16 Score=132.27 Aligned_cols=104 Identities=16% Similarity=0.233 Sum_probs=87.6
Q ss_pred CccccCcCCCcEEecCCCCeEeCCCccCCCeEEEEEecCCCChhHHHHHHHHHHhHHHHHHcCCEEEEEeCCCHHHHHHH
Q 027245 68 SEDTKNLLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTF 147 (226)
Q Consensus 68 ~~~~g~~apdf~L~D~~G~~v~Lsdl~~~~~vVVvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs~~~~~~i~~f 147 (226)
..++|+.+|+|+++|.+|+.+++++....++++|++||+.|||+|+++++.+.+.++ +.|+++++|+.++.+.+++|
T Consensus 45 ~~~vG~~aP~f~l~d~~G~~v~l~~~~~~gk~vvl~F~atwCp~C~~~lp~l~~~~~---~~~~~vv~Is~~~~~~~~~~ 121 (189)
T TIGR02661 45 GPDVGDAAPIFNLPDFDGEPVRIGGSIAPGRPTLLMFTAPSCPVCDKLFPIIKSIAR---AEETDVVMISDGTPAEHRRF 121 (189)
T ss_pred CCCCCCcCCCcEecCCCCCEEeccchhcCCCEEEEEEECCCChhHHHHHHHHHHHHH---hcCCcEEEEeCCCHHHHHHH
Confidence 468899999999999999999996421134567777799999999999999999765 35789999999999999999
Q ss_pred HHHcCCceeEEecCChHHHHHcCCcccc
Q 027245 148 SEQTKFKGEVYADPNHSSYEALSFVSGV 175 (226)
Q Consensus 148 ~~~~~~pfpll~Dp~~~ly~alGv~~~~ 175 (226)
+++++++|+.|. .++++.+.||+...+
T Consensus 122 ~~~~~~~~~~~~-~~~~i~~~y~v~~~P 148 (189)
T TIGR02661 122 LKDHELGGERYV-VSAEIGMAFQVGKIP 148 (189)
T ss_pred HHhcCCCcceee-chhHHHHhccCCccc
Confidence 999999998775 678899999986544
No 33
>PF13911 AhpC-TSA_2: AhpC/TSA antioxidant enzyme
Probab=99.69 E-value=2e-16 Score=122.53 Aligned_cols=102 Identities=28% Similarity=0.393 Sum_probs=82.1
Q ss_pred HHHhHHHHHHcCCEEEEEeCCCHHHHHHHHHHcCCceeEEecCChHHHHHcCCccccceeecchhhHHHHHHHHhhhcc-
Q 027245 119 LAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKGEVYADPNHSSYEALSFVSGVLVTFTPKAGLKIIQSYMEGYRQ- 197 (226)
Q Consensus 119 L~~~~~~l~~~Gv~lVaIs~~~~~~i~~f~~~~~~pfpll~Dp~~~ly~alGv~~~~~~t~~p~a~~~~~~~~~~G~r~- 197 (226)
|.+.+++|+++||++|+|++++++.+++|++.+++|+|||+||++++|++||+.++....+.+..+...+..+..+.+.
T Consensus 2 L~~~~~~l~~~gv~lv~I~~g~~~~~~~f~~~~~~p~~ly~D~~~~lY~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (115)
T PF13911_consen 2 LSRRKPELEAAGVKLVVIGCGSPEGIEKFCELTGFPFPLYVDPERKLYKALGLKRGLKWSLLPPALWSGLSNIVQSAKNG 81 (115)
T ss_pred hhHhHHHHHHcCCeEEEEEcCCHHHHHHHHhccCCCCcEEEeCcHHHHHHhCCccccccCCCchHHHHHHHHHHHHHHHc
Confidence 6778999999999999999999988999999999999999999999999999999887777666554444433333322
Q ss_pred cccccc-cCCccccCccc--ccCceE
Q 027245 198 DWKLSF-ERDTVSRGGWI--KKLGMI 220 (226)
Q Consensus 198 ~w~~~~-~GD~~Q~GG~~--q~gg~~ 220 (226)
.+..+. +||.+|+||.. .+||++
T Consensus 82 ~~~~~~~~g~~~q~GG~fv~d~~g~v 107 (115)
T PF13911_consen 82 GIPGNKDQGDGWQLGGTFVFDPGGKV 107 (115)
T ss_pred CCCCcccCCCceecCeEEEEcCCCeE
Confidence 333455 99999999998 455544
No 34
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=99.68 E-value=1.3e-16 Score=125.10 Aligned_cols=90 Identities=12% Similarity=0.207 Sum_probs=80.0
Q ss_pred CCeEeCCCccCCCeEEEEEecCCCChhHHHHHHHHHHhHHHHHHcCCEEEEEeC------CCHHHHHHHHHHcCCceeEE
Q 027245 85 GNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGP------GSVEQARTFSEQTKFKGEVY 158 (226)
Q Consensus 85 G~~v~Lsdl~~~~~vVVvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs~------~~~~~i~~f~~~~~~pfpll 158 (226)
|++++++++ ++ +++|++||++|||+|+++++.|+++++++++.|+.+|+|+. ++.+.+++|+++++++||++
T Consensus 13 ~~~v~l~~~-~g-k~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 90 (126)
T cd03012 13 DKPLSLAQL-RG-KVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHSPEFAFERDLANVKSAVLRYGITYPVA 90 (126)
T ss_pred CCccCHHHh-CC-CEEEEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEeccCccccccCHHHHHHHHHHcCCCCCEE
Confidence 578999997 44 67777889999999999999999999999999999999976 45789999999999999999
Q ss_pred ecCChHHHHHcCCccccc
Q 027245 159 ADPNHSSYEALSFVSGVL 176 (226)
Q Consensus 159 ~Dp~~~ly~alGv~~~~~ 176 (226)
.|++..+++.||+...+.
T Consensus 91 ~D~~~~~~~~~~v~~~P~ 108 (126)
T cd03012 91 NDNDYATWRAYGNQYWPA 108 (126)
T ss_pred ECCchHHHHHhCCCcCCe
Confidence 999999999999865443
No 35
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=99.68 E-value=7e-17 Score=130.89 Aligned_cols=84 Identities=11% Similarity=0.190 Sum_probs=76.0
Q ss_pred CCCcEEecCCCCeEeCCCccCCCeEEEEEecCCCChhHHHHHHHHHHhHHHHHHcCCEEEEEeC--------CCHHHHHH
Q 027245 75 LDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGP--------GSVEQART 146 (226)
Q Consensus 75 apdf~L~D~~G~~v~Lsdl~~~~~vVVvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs~--------~~~~~i~~ 146 (226)
+-+|++.|.+|++++|+++ ++ +++|++||++|||+|..++++|++.++++.+.|+.+++|++ ++.+.+++
T Consensus 2 ~~~f~l~~~~G~~~~l~~~-~G-k~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i~~~~~~~~~~d~~~~~~~ 79 (153)
T TIGR02540 2 FYSFEVKDARGRTVSLEKY-RG-KVSLVVNVASECGFTDQNYRALQELHRELGPSHFNVLAFPCNQFGESEPDSSKEIES 79 (153)
T ss_pred cccceeECCCCCEecHHHh-CC-CEEEEEEeCCCCCchhhhHHHHHHHHHHHhhCCeEEEEEeccccccCCCCCHHHHHH
Confidence 4589999999999999997 44 56788899999999999999999999999999999999995 66789999
Q ss_pred HHHH-cCCceeEEec
Q 027245 147 FSEQ-TKFKGEVYAD 160 (226)
Q Consensus 147 f~~~-~~~pfpll~D 160 (226)
|+++ ++++||+++|
T Consensus 80 f~~~~~~~~fp~~~d 94 (153)
T TIGR02540 80 FARRNYGVTFPMFSK 94 (153)
T ss_pred HHHHhcCCCCCccce
Confidence 9986 8999999987
No 36
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=99.67 E-value=2.9e-16 Score=124.10 Aligned_cols=99 Identities=19% Similarity=0.231 Sum_probs=87.7
Q ss_pred cCCCcEEecCCCCeEeCCCccCCCeEEEEEecCCCChh-HHHHHHHHHHhHHHHHHcC---CEEEEEeCC----CHHHHH
Q 027245 74 LLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVL-CRKRADYLAAKKDVMDASG---VALVLIGPG----SVEQAR 145 (226)
Q Consensus 74 ~apdf~L~D~~G~~v~Lsdl~~~~~vVVvF~R~~~Cp~-C~~el~~L~~~~~~l~~~G---v~lVaIs~~----~~~~i~ 145 (226)
.+|+|++.|.+|+++++.++ + ++++|++||+.||+. |..+++.|++.++++.+.| +++++|+.+ +++.++
T Consensus 1 ~~p~f~l~~~~g~~~~l~~~-~-gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d~~~d~~~~~~ 78 (142)
T cd02968 1 IGPDFTLTDQDGRPVTLSDL-K-GKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVDPERDTPEVLK 78 (142)
T ss_pred CCCceEEEcCCCCEEchHHh-C-CCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEECCCCCCHHHHH
Confidence 47999999999999999997 4 467788889999997 9999999999999998875 999999975 458899
Q ss_pred HHHHHcCCceeEEecCC---hHHHHHcCCccc
Q 027245 146 TFSEQTKFKGEVYADPN---HSSYEALSFVSG 174 (226)
Q Consensus 146 ~f~~~~~~pfpll~Dp~---~~ly~alGv~~~ 174 (226)
+|+++++.+|+++.|++ ..+.+.||+...
T Consensus 79 ~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~ 110 (142)
T cd02968 79 AYAKAFGPGWIGLTGTPEEIEALAKAFGVYYE 110 (142)
T ss_pred HHHHHhCCCcEEEECCHHHHHHHHHHhcEEEE
Confidence 99999999999999986 789999998654
No 37
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=99.66 E-value=5.6e-16 Score=129.86 Aligned_cols=103 Identities=16% Similarity=0.113 Sum_probs=86.3
Q ss_pred CccccCcCCCcEEecCC--CCeEeCCCccCCCeEEEEEecCCCChhHHHHHHHHHHhHHHHHHcCCEEEEEeCC-CHHHH
Q 027245 68 SEDTKNLLDTVKVYDVN--GNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPG-SVEQA 144 (226)
Q Consensus 68 ~~~~g~~apdf~L~D~~--G~~v~Lsdl~~~~~vVVvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs~~-~~~~i 144 (226)
...+|+.+|+|++.|.+ |+.+++.++.+ ++++|++||++|||+|+++++.|.+++ +.|++||+|+.+ +.+.+
T Consensus 38 ~~~~g~~~p~f~l~~~~g~g~~~~~~~~~~-gk~vvv~FwatwC~~C~~e~p~l~~l~----~~~~~vi~v~~~~~~~~~ 112 (185)
T PRK15412 38 SALIGKPVPKFRLESLENPGQFYQADVLTQ-GKPVLLNVWATWCPTCRAEHQYLNQLS----AQGIRVVGMNYKDDRQKA 112 (185)
T ss_pred hhhcCCCCCCcCCccCCCCCccccHHHhcC-CCEEEEEEECCCCHHHHHHHHHHHHHH----HcCCEEEEEECCCCHHHH
Confidence 45679999999999988 47777766543 467888889999999999999997764 469999999975 46789
Q ss_pred HHHHHHcCCcee-EEecCChHHHHHcCCcccc
Q 027245 145 RTFSEQTKFKGE-VYADPNHSSYEALSFVSGV 175 (226)
Q Consensus 145 ~~f~~~~~~pfp-ll~Dp~~~ly~alGv~~~~ 175 (226)
++|.++++++|+ ++.|++..+.+.||+...+
T Consensus 113 ~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~P 144 (185)
T PRK15412 113 ISWLKELGNPYALSLFDGDGMLGLDLGVYGAP 144 (185)
T ss_pred HHHHHHcCCCCceEEEcCCccHHHhcCCCcCC
Confidence 999999999999 5889999999999986554
No 38
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=99.65 E-value=1.1e-15 Score=126.69 Aligned_cols=106 Identities=15% Similarity=0.115 Sum_probs=85.9
Q ss_pred CCCCccccCcCCCcEEecCCCCe--EeCCCccCCCeEEEEEecCCCChhHHHHHHHHHHhHHHHHHcCCEEEEEeCCC-H
Q 027245 65 PSVSEDTKNLLDTVKVYDVNGNA--IPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGS-V 141 (226)
Q Consensus 65 ~~~~~~~g~~apdf~L~D~~G~~--v~Lsdl~~~~~vVVvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs~~~-~ 141 (226)
..++..+|+.+|+|++.|.+|+. ++++++. +++++|++||+.|||.|+++++.|++.+ +.|+.+|+|+.++ .
T Consensus 30 ~~~~~~vG~~ap~f~l~~~~G~~~~~~~~~~~-~gk~vll~F~a~wC~~C~~~~p~l~~l~----~~~~~vi~V~~~~~~ 104 (173)
T TIGR00385 30 ALPSALIGKPVPAFPLAALREPLQAYTPEAFI-QGKPVLLNVWASWCPPCRAEHPYLNELA----KDGLPIVGVDYKDQS 104 (173)
T ss_pred cCcchhcCCCCCCccccccCCCCcccCHHHhc-CCCEEEEEEECCcCHHHHHHHHHHHHHH----HcCCEEEEEECCCCh
Confidence 34456789999999999999984 4444544 4567888888999999999999987664 4589999999754 4
Q ss_pred HHHHHHHHHcCCcee-EEecCChHHHHHcCCcccc
Q 027245 142 EQARTFSEQTKFKGE-VYADPNHSSYEALSFVSGV 175 (226)
Q Consensus 142 ~~i~~f~~~~~~pfp-ll~Dp~~~ly~alGv~~~~ 175 (226)
+..++|+++++++|+ ++.|+++.+.+.||+...+
T Consensus 105 ~~~~~~~~~~~~~f~~v~~D~~~~~~~~~~v~~~P 139 (173)
T TIGR00385 105 QNALKFLKELGNPYQAILIDPNGKLGLDLGVYGAP 139 (173)
T ss_pred HHHHHHHHHcCCCCceEEECCCCchHHhcCCeeCC
Confidence 677899999999998 6789999999999986544
No 39
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=99.63 E-value=3.4e-15 Score=113.94 Aligned_cols=96 Identities=13% Similarity=0.151 Sum_probs=80.7
Q ss_pred CCcEEecCCCCeEeCCCccCCCeEEEEEecCCCChhHHHHHHHHHHhHHHHHHcCCEEEEEeCCCHHHHHHHHHHcCCc-
Q 027245 76 DTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFK- 154 (226)
Q Consensus 76 pdf~L~D~~G~~v~Lsdl~~~~~vVVvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs~~~~~~i~~f~~~~~~p- 154 (226)
|+|++.|.+|+.++|+++. +++++|++||+.||+.|+++++.|.+.++++. .++.+++|+.++.+..++|+++++++
T Consensus 1 p~f~l~~~~G~~~~l~~~~-~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~-~~~~vi~v~~~~~~~~~~~~~~~~~~~ 78 (114)
T cd02967 1 PTFDLTTIDGAPVRIGGIS-PGRPTLLFFLSPTCPVCKKLLPVIRSIARAEA-DWLDVVLASDGEKAEHQRFLKKHGLEA 78 (114)
T ss_pred CCceeecCCCCEEEccccc-CCCeEEEEEECCCCcchHhHhHHHHHHHHHhc-CCcEEEEEeCCCHHHHHHHHHHhCCCC
Confidence 7899999999999999974 34566777889999999999999999887764 47889999888889999999999995
Q ss_pred eeEEecCChHHHHHcCCcccc
Q 027245 155 GEVYADPNHSSYEALSFVSGV 175 (226)
Q Consensus 155 fpll~Dp~~~ly~alGv~~~~ 175 (226)
+|++.| ..+.+.||+...+
T Consensus 79 ~p~~~~--~~~~~~~~~~~~P 97 (114)
T cd02967 79 FPYVLS--AELGMAYQVSKLP 97 (114)
T ss_pred CcEEec--HHHHhhcCCCCcC
Confidence 898774 4688889985443
No 40
>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=2.4e-15 Score=127.05 Aligned_cols=104 Identities=17% Similarity=0.198 Sum_probs=96.6
Q ss_pred ccccCcCCCcEEecC-CCC---eEeCCCccCCCeEEEEEecCCCChhHHHHHHHHHHhHHHHHHcCCEEEEEeCCCHHHH
Q 027245 69 EDTKNLLDTVKVYDV-NGN---AIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQA 144 (226)
Q Consensus 69 ~~~g~~apdf~L~D~-~G~---~v~Lsdl~~~~~vVVvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs~~~~~~i 144 (226)
.-+|+++|+|++... .|+ +++|+++++ +++||+|+++.+.|.|-.|+.++++.|++|+++|++|++||.|+...+
T Consensus 3 ~lIg~~aP~F~~~a~~~~~~~~~i~l~d~~g-kw~VLff~P~DFTfVCpTEi~af~~~y~eF~~~g~eVigvS~Ds~fsH 81 (194)
T COG0450 3 SLIGKKAPDFTANAVLGGEIFEEITLSDYYG-KWVVLFFYPADFTFVCPTEIIAFAKRYEEFQKRGVEVIGVSTDSVFSH 81 (194)
T ss_pred cccCCcCCCcEEEEEecCceeeEEechhhcC-cEEEEEeccCCCCccCcchHHHHHhhhHHHHHcCCEEEEEecCcHHHH
Confidence 467999999999887 775 999999876 899999999999999999999999999999999999999999999999
Q ss_pred HHHHHH----cC---CceeEEecCChHHHHHcCCcc
Q 027245 145 RTFSEQ----TK---FKGEVYADPNHSSYEALSFVS 173 (226)
Q Consensus 145 ~~f~~~----~~---~pfpll~Dp~~~ly~alGv~~ 173 (226)
.+|.+. .+ ++|||++|+++++.++|||..
T Consensus 82 ~aW~~~~~~~~gi~~i~~PmiaD~~~~vs~~ygvl~ 117 (194)
T COG0450 82 KAWKATIREAGGIGKIKFPMIADPKGEIARAYGVLH 117 (194)
T ss_pred HHHHhcHHhcCCccceecceEEcCchhHHHHcCCcc
Confidence 999876 55 789999999999999999976
No 41
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=99.62 E-value=3.4e-15 Score=116.56 Aligned_cols=98 Identities=18% Similarity=0.112 Sum_probs=83.3
Q ss_pred CcCCCcEEecCCC--CeEeCCCccCCCeEEEEEecCCCChhHHHHHHHHHHhHHHHHHcCCEEEEEeC-CCHHHHHHHHH
Q 027245 73 NLLDTVKVYDVNG--NAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGP-GSVEQARTFSE 149 (226)
Q Consensus 73 ~~apdf~L~D~~G--~~v~Lsdl~~~~~vVVvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs~-~~~~~i~~f~~ 149 (226)
+++|+|++.|.+| +.++++++ ++ +++|+.||+.|||.|+++++.|+++.+++ ++.+|+|+. ++.+.+++|++
T Consensus 1 ~~~p~f~~~~~~g~~~~~~~~~~-~g-k~vvv~F~a~~C~~C~~~~~~l~~l~~~~---~~~vv~v~~~~~~~~~~~~~~ 75 (127)
T cd03010 1 KPAPAFSLPALPGPDKTLTSADL-KG-KPYLLNVWASWCAPCREEHPVLMALARQG---RVPIYGINYKDNPENALAWLA 75 (127)
T ss_pred CCCCCcccccccCCCccccHHHc-CC-CEEEEEEEcCcCHHHHHHHHHHHHHHHhc---CcEEEEEECCCCHHHHHHHHH
Confidence 3689999999999 88999887 34 45666777999999999999999887653 599999996 55689999999
Q ss_pred HcCCcee-EEecCChHHHHHcCCcccc
Q 027245 150 QTKFKGE-VYADPNHSSYEALSFVSGV 175 (226)
Q Consensus 150 ~~~~pfp-ll~Dp~~~ly~alGv~~~~ 175 (226)
+++++|+ ++.|+++.+.+.||+...+
T Consensus 76 ~~~~~~~~~~~D~~~~~~~~~~v~~~P 102 (127)
T cd03010 76 RHGNPYAAVGFDPDGRVGIDLGVYGVP 102 (127)
T ss_pred hcCCCCceEEECCcchHHHhcCCCCCC
Confidence 9999986 7799999999999997654
No 42
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=99.60 E-value=8.7e-15 Score=108.69 Aligned_cols=99 Identities=20% Similarity=0.221 Sum_probs=89.4
Q ss_pred CcEEecCCCCeEeCCCccCCCeEEEEEecCCCChhHHHHHHHHHHhHHHHHHcCCEEEEEeCCC--HHHHHHHHHHcCCc
Q 027245 77 TVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGS--VEQARTFSEQTKFK 154 (226)
Q Consensus 77 df~L~D~~G~~v~Lsdl~~~~~vVVvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs~~~--~~~i~~f~~~~~~p 154 (226)
+|++.|.+|+.+++.++. ++.+|++|++.||+.|+..++.|.+..+++.+.++.+++|+.++ .+.+++|.++++++
T Consensus 1 ~~~~~~~~g~~~~~~~~~--~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~ 78 (116)
T cd02966 1 DFSLPDLDGKPVSLSDLK--GKVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKYGIT 78 (116)
T ss_pred CccccCCCCCEeehHHcC--CCEEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHcCCC
Confidence 578899999999999973 56788888899999999999999999999988899999999998 89999999999999
Q ss_pred eeEEecCChHHHHHcCCccccce
Q 027245 155 GEVYADPNHSSYEALSFVSGVLV 177 (226)
Q Consensus 155 fpll~Dp~~~ly~alGv~~~~~~ 177 (226)
++++.|++..+.+.||+...+..
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~P~~ 101 (116)
T cd02966 79 FPVLLDPDGELAKAYGVRGLPTT 101 (116)
T ss_pred cceEEcCcchHHHhcCcCccceE
Confidence 99999999999999999754433
No 43
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=99.55 E-value=2.7e-14 Score=110.41 Aligned_cols=97 Identities=12% Similarity=0.172 Sum_probs=83.0
Q ss_pred CCcEEecCCCCeEeCCCccCCCeEEEEEecCCCChhHHHHHHHHHHhHHHHHHcCCEEEEEeCC--CHHHHHHHHHHcCC
Q 027245 76 DTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPG--SVEQARTFSEQTKF 153 (226)
Q Consensus 76 pdf~L~D~~G~~v~Lsdl~~~~~vVVvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs~~--~~~~i~~f~~~~~~ 153 (226)
|+|++.|.+|+.+++.++ ++ +.+|++|++.||+.|+.+++.|++++++ +.+++|+.+ +.+.+++|++++++
T Consensus 1 p~f~l~~~~g~~~~~~~~-~~-k~~vl~F~~~~C~~C~~~~~~l~~~~~~-----~~~i~i~~~~~~~~~~~~~~~~~~~ 73 (123)
T cd03011 1 PLFTATTLDGEQFDLESL-SG-KPVLVYFWATWCPVCRFTSPTVNQLAAD-----YPVVSVALRSGDDGAVARFMQKKGY 73 (123)
T ss_pred CCceeecCCCCEeeHHHh-CC-CEEEEEEECCcChhhhhhChHHHHHHhh-----CCEEEEEccCCCHHHHHHHHHHcCC
Confidence 789999999999999986 34 5677777799999999999999998876 567777765 46899999999999
Q ss_pred ceeEEecCChHHHHHcCCccccceee
Q 027245 154 KGEVYADPNHSSYEALSFVSGVLVTF 179 (226)
Q Consensus 154 pfpll~Dp~~~ly~alGv~~~~~~t~ 179 (226)
+|+++.|++.++.+.|++...+...+
T Consensus 74 ~~~~~~d~~~~~~~~~~i~~~P~~~v 99 (123)
T cd03011 74 GFPVINDPDGVISARWGVSVTPAIVI 99 (123)
T ss_pred CccEEECCCcHHHHhCCCCcccEEEE
Confidence 99999999999999999977655443
No 44
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=99.54 E-value=1.9e-14 Score=121.37 Aligned_cols=95 Identities=16% Similarity=0.242 Sum_probs=80.5
Q ss_pred CcCCCcEEecCCCCeEeCCCccCCCeEEEEEecCCCChhHHHHHHHHHHhHHHHHHcCCEEEEEeC--------CCHHHH
Q 027245 73 NLLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGP--------GSVEQA 144 (226)
Q Consensus 73 ~~apdf~L~D~~G~~v~Lsdl~~~~~vVVvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs~--------~~~~~i 144 (226)
+.+++|++.|.+|++++|+++ ++ ++|||.||++||++|. ++++|+++++++++.|+.|++|.+ ++.+++
T Consensus 3 ~~~~~f~~~~~~G~~v~Ls~~-~G-KvvLVvf~AS~C~~~~-q~~~L~~L~~~y~~~gl~Vlg~p~nqf~~qe~~~~~ei 79 (183)
T PRK10606 3 DSILTTVVTTIDGEVTTLEKY-AG-NVLLIVNVASKCGLTP-QYEQLENIQKAWADQGFVVLGFPCNQFLGQEPGSDEEI 79 (183)
T ss_pred CCccCcEeECCCCCEEeHHHh-CC-CEEEEEEEeCCCCCcH-HHHHHHHHHHHHhhCCeEEEEeeccccccCCCCCHHHH
Confidence 458899999999999999997 34 6777777999999995 799999999999999999999988 467899
Q ss_pred HHHHH-HcCCceeEEe--cCC----hHHHHHcC
Q 027245 145 RTFSE-QTKFKGEVYA--DPN----HSSYEALS 170 (226)
Q Consensus 145 ~~f~~-~~~~pfpll~--Dp~----~~ly~alG 170 (226)
++|++ +++++|||+. |-+ +.+|+-|-
T Consensus 80 ~~f~~~~~g~~Fpv~~k~dvnG~~~~pl~~~Lk 112 (183)
T PRK10606 80 KTYCRTTWGVTFPMFSKIEVNGEGRHPLYQKLI 112 (183)
T ss_pred HHHHHHccCCCceeEEEEccCCCCCCHHHHHHH
Confidence 99997 7999999994 432 45677653
No 45
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=99.48 E-value=3.1e-13 Score=129.73 Aligned_cols=105 Identities=13% Similarity=0.079 Sum_probs=89.6
Q ss_pred ccccCcCCCcEEecCCCCeEeCCCccCCCeEEEEEecCCCChhHHHHHHHHHHhHHHHHHcCCEEEEEeCC------CHH
Q 027245 69 EDTKNLLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPG------SVE 142 (226)
Q Consensus 69 ~~~g~~apdf~L~D~~G~~v~Lsdl~~~~~vVVvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs~~------~~~ 142 (226)
..+++.+|+|++.|.+|+.+.++ .+++|||+||++||++|+++++.|.+++++++..++.||+|+.+ +.+
T Consensus 32 ~~~~~~lP~f~l~D~dG~~v~ls----kGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~~e~~~~ 107 (521)
T PRK14018 32 ATVPHTLSTLKTADNRPASVYLK----KDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFLHEKKDG 107 (521)
T ss_pred ccccCCCCCeEeecCCCceeecc----CCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCCeEEEEEecccccccccHH
Confidence 56678899999999999999986 35689999999999999999999999999998888999999863 245
Q ss_pred HHHHHHHHcCC-ceeEEecCChHHHHHcCCccccce
Q 027245 143 QARTFSEQTKF-KGEVYADPNHSSYEALSFVSGVLV 177 (226)
Q Consensus 143 ~i~~f~~~~~~-pfpll~Dp~~~ly~alGv~~~~~~ 177 (226)
.+++|.+..++ .+|++.|++..+.+.||+..-+..
T Consensus 108 ~~~~~~~~~~y~~~pV~~D~~~~lak~fgV~giPTt 143 (521)
T PRK14018 108 DFQKWYAGLDYPKLPVLTDNGGTLAQSLNISVYPSW 143 (521)
T ss_pred HHHHHHHhCCCcccceeccccHHHHHHcCCCCcCeE
Confidence 67778887777 489999999999999998654443
No 46
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=99.44 E-value=2.2e-13 Score=106.92 Aligned_cols=97 Identities=14% Similarity=0.176 Sum_probs=77.1
Q ss_pred EecCCCCeEeCCCccCCCeEEEEEecCCCChhHHHHHHHHHHhHHHHHHc--CCEEEEEeCCCH-HHHHHHHHHcCC---
Q 027245 80 VYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDAS--GVALVLIGPGSV-EQARTFSEQTKF--- 153 (226)
Q Consensus 80 L~D~~G~~v~Lsdl~~~~~vVVvF~R~~~Cp~C~~el~~L~~~~~~l~~~--Gv~lVaIs~~~~-~~i~~f~~~~~~--- 153 (226)
|.|.+|+.++++++ .+++||++||++||+.|+++++.|++.++++++. +++|++|+.+.. +..++|.++.++
T Consensus 3 l~~~~G~~v~l~~~--~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~ 80 (131)
T cd03009 3 LLRNDGGKVPVSSL--EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAV 80 (131)
T ss_pred ccccCCCCccHHHh--CCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEc
Confidence 56889999999997 3467899999999999999999999999999875 799999999865 566777777653
Q ss_pred ceeEEecCChHHHHHcCCccccceee
Q 027245 154 KGEVYADPNHSSYEALSFVSGVLVTF 179 (226)
Q Consensus 154 pfpll~Dp~~~ly~alGv~~~~~~t~ 179 (226)
+|+. .|.+..+.+.||+...+...+
T Consensus 81 ~~~~-~~~~~~~~~~~~v~~~P~~~l 105 (131)
T cd03009 81 PFSD-RERRSRLNRTFKIEGIPTLII 105 (131)
T ss_pred ccCC-HHHHHHHHHHcCCCCCCEEEE
Confidence 3332 356678999999976554433
No 47
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=99.42 E-value=6.2e-13 Score=108.50 Aligned_cols=89 Identities=15% Similarity=0.058 Sum_probs=70.7
Q ss_pred eEeCCCccCCCeEEEEEecCCCChhHHHHHHHHHHhHHHHHHc-------CCEEEEEeCCCH-HHHHHHHHHcCCce--e
Q 027245 87 AIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDAS-------GVALVLIGPGSV-EQARTFSEQTKFKG--E 156 (226)
Q Consensus 87 ~v~Lsdl~~~~~vVVvF~R~~~Cp~C~~el~~L~~~~~~l~~~-------Gv~lVaIs~~~~-~~i~~f~~~~~~pf--p 156 (226)
.++|+++ .+++|+++||++|||+|++++|.|.++++++.+. ++.||+|+.|.. +.+++|.++.++++ +
T Consensus 17 ~~~ls~~--kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~ 94 (146)
T cd03008 17 REIVARL--ENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFL 94 (146)
T ss_pred cccHHHh--CCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceee
Confidence 5677787 4578999999999999999999999999888654 799999999864 56899999999554 3
Q ss_pred -EEecCChHHHHHcCCccccce
Q 027245 157 -VYADPNHSSYEALSFVSGVLV 177 (226)
Q Consensus 157 -ll~Dp~~~ly~alGv~~~~~~ 177 (226)
+..|.+..+.++||+..-+..
T Consensus 95 p~~~~~~~~l~~~y~v~~iPt~ 116 (146)
T cd03008 95 PFEDEFRRELEAQFSVEELPTV 116 (146)
T ss_pred cccchHHHHHHHHcCCCCCCEE
Confidence 333445689999998654433
No 48
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.42 E-value=6.3e-13 Score=137.02 Aligned_cols=110 Identities=15% Similarity=0.118 Sum_probs=94.0
Q ss_pred CCCccccCcCCCcEEec--CCCCeEeCC-CccCCCeEEEEEecCCCChhHHHHHHHHHHhHHHHHHcCCEEEEEeC---C
Q 027245 66 SVSEDTKNLLDTVKVYD--VNGNAIPIS-DLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGP---G 139 (226)
Q Consensus 66 ~~~~~~g~~apdf~L~D--~~G~~v~Ls-dl~~~~~vVVvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs~---~ 139 (226)
+.....|+.+|+|...+ .+|++++|. ++ .+++||+.||++||++|+.++|.|+++++++++.++.+|+|+. +
T Consensus 388 ~~~~~~g~~~p~f~~~~~~~~g~~~~l~~~l--kGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~D 465 (1057)
T PLN02919 388 LESKKTATKVPEFPPKLDWLNTAPLQFRRDL--KGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKFD 465 (1057)
T ss_pred hhccccCCcCCCCcccccccCCccccchhhc--CCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCCCeEEEEEeccccc
Confidence 34456799999999876 689999985 55 3578999999999999999999999999999989999999973 2
Q ss_pred ---CHHHHHHHHHHcCCceeEEecCChHHHHHcCCccccce
Q 027245 140 ---SVEQARTFSEQTKFKGEVYADPNHSSYEALSFVSGVLV 177 (226)
Q Consensus 140 ---~~~~i~~f~~~~~~pfpll~Dp~~~ly~alGv~~~~~~ 177 (226)
+.+.+++|.++++++||++.|.+..+.+.|++...+..
T Consensus 466 ~~~~~~~~~~~~~~~~i~~pvv~D~~~~~~~~~~V~~iPt~ 506 (1057)
T PLN02919 466 NEKDLEAIRNAVLRYNISHPVVNDGDMYLWRELGVSSWPTF 506 (1057)
T ss_pred ccccHHHHHHHHHHhCCCccEEECCchHHHHhcCCCccceE
Confidence 35688999999999999999999999999998654433
No 49
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=99.36 E-value=3.9e-12 Score=100.46 Aligned_cols=95 Identities=14% Similarity=0.169 Sum_probs=74.0
Q ss_pred EecCCCCeEeCCCccCCCeEEEEEecCCCChhHHHHHHHHHHhHHHHHHc--CCEEEEEeCCCH-HHHHHHHHHcCCcee
Q 027245 80 VYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDAS--GVALVLIGPGSV-EQARTFSEQTKFKGE 156 (226)
Q Consensus 80 L~D~~G~~v~Lsdl~~~~~vVVvF~R~~~Cp~C~~el~~L~~~~~~l~~~--Gv~lVaIs~~~~-~~i~~f~~~~~~pfp 156 (226)
+.|.+ ++++++++ .+++||++||++||+.|+++++.|++.++++++. +++|++|+.+.. +.+++|.++++ ++.
T Consensus 3 ~~~~~-~~v~l~~~--~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~-~~~ 78 (132)
T cd02964 3 LLDGE-GVVPVSAL--EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMP-PWL 78 (132)
T ss_pred cccCC-ccccHHHh--CCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCC-CeE
Confidence 34544 59999997 4578999999999999999999999999999875 899999998864 68899999986 443
Q ss_pred --EEec--CChHHHHHcCCcccccee
Q 027245 157 --VYAD--PNHSSYEALSFVSGVLVT 178 (226)
Q Consensus 157 --ll~D--p~~~ly~alGv~~~~~~t 178 (226)
.+.| ....+.+.||+...+...
T Consensus 79 ~~~~~d~~~~~~~~~~~~v~~iPt~~ 104 (132)
T cd02964 79 AVPFEDEELRELLEKQFKVEGIPTLV 104 (132)
T ss_pred eeccCcHHHHHHHHHHcCCCCCCEEE
Confidence 3344 234667779986655444
No 50
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=99.32 E-value=8.2e-12 Score=105.26 Aligned_cols=90 Identities=13% Similarity=0.082 Sum_probs=72.0
Q ss_pred cccCcCCCcEEecCCCCeEeCCCccCCCeEEEEEecCCCChhHHHHHHHHHHhHHHHHHcCCEEEEEeCCCHHHHHHHHH
Q 027245 70 DTKNLLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSE 149 (226)
Q Consensus 70 ~~g~~apdf~L~D~~G~~v~Lsdl~~~~~vVVvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs~~~~~~i~~f~~ 149 (226)
.+....++|++. +|+.++++++. |++||++|||+|++|++.|++.++++ |+.|++|+.|...
T Consensus 50 ~~~~~~~~f~l~--dG~~v~lsd~~------lV~FwaswCp~C~~e~P~L~~l~~~~---g~~Vi~Vs~D~~~------- 111 (181)
T PRK13728 50 TEKPAPRWFRLS--NGRQVNLADWK------VVLFMQGHCPYCHQFDPVLKQLAQQY---GFSVFPYTLDGQG------- 111 (181)
T ss_pred cCCCCCCccCCC--CCCEeehhHce------EEEEECCCCHhHHHHHHHHHHHHHHc---CCEEEEEEeCCCC-------
Confidence 445578889885 79999999972 66799999999999999999998875 7999999987542
Q ss_pred HcCCceeEEec-CChHHHHHcCC-ccccceee
Q 027245 150 QTKFKGEVYAD-PNHSSYEALSF-VSGVLVTF 179 (226)
Q Consensus 150 ~~~~pfpll~D-p~~~ly~alGv-~~~~~~t~ 179 (226)
...||++.| ++..+.+.||. .++.+.++
T Consensus 112 --~~~fPv~~dd~~~~~~~~~g~~~~~iPttf 141 (181)
T PRK13728 112 --DTAFPEALPAPPDVMQTFFPNIPVATPTTF 141 (181)
T ss_pred --CCCCceEecCchhHHHHHhCCCCCCCCeEE
Confidence 368999985 67788889995 34554443
No 51
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=99.30 E-value=5.3e-12 Score=106.71 Aligned_cols=106 Identities=13% Similarity=0.038 Sum_probs=85.7
Q ss_pred CCCccccCcCCCcEEecC-----C-----CCeEeCCCccCCCeEEEEEecCCCChhHHHHHHHHHHhHHHHHHcCCEE--
Q 027245 66 SVSEDTKNLLDTVKVYDV-----N-----GNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVAL-- 133 (226)
Q Consensus 66 ~~~~~~g~~apdf~L~D~-----~-----G~~v~Lsdl~~~~~vVVvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~l-- 133 (226)
.+....|+.+|.+.+.|. + .+.++.++| .+++.||+||+.||++|+.|+|.|.++ +++|+.+
T Consensus 20 a~~~~~~~~~p~v~~~~~ge~~~~~~~~~y~~~~~~~l--~GKV~lvn~~Aswc~~c~~e~P~l~~l----~~~~~~~~~ 93 (184)
T TIGR01626 20 AHNLQVEQSVPSVGVSEYGEIVLSGKDTVYQPWGSAEL--AGKVRVVHHIAGRTSAKEXNASLIDAI----KAAKFPPVK 93 (184)
T ss_pred hhhhhcCCcCCceEecCCceEEEcCCcccceeccHHHc--CCCEEEEEEEecCCChhhccchHHHHH----HHcCCCccc
Confidence 355778888888888765 3 345566676 378999999999999999999999888 5678888
Q ss_pred ----EEEeCCCH-----HHHHHHHHHcCCcee---EEecCChHHHHHcCCccccce
Q 027245 134 ----VLIGPGSV-----EQARTFSEQTKFKGE---VYADPNHSSYEALSFVSGVLV 177 (226)
Q Consensus 134 ----VaIs~~~~-----~~i~~f~~~~~~pfp---ll~Dp~~~ly~alGv~~~~~~ 177 (226)
++|+.++. ..++.|+++.+..|| ++.|+++.+..+||+...+..
T Consensus 94 y~~t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~~vllD~~g~v~~~~gv~~~P~T 149 (184)
T TIGR01626 94 YQTTTIINADDAIVGTGMFVKSSAKKGKKENPWSQVVLDDKGAVKNAWQLNSEDSA 149 (184)
T ss_pred ccceEEEECccchhhHHHHHHHHHHHhcccCCcceEEECCcchHHHhcCCCCCCce
Confidence 99999863 346777778888888 999999999999999765454
No 52
>KOG0854 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=99.29 E-value=1.1e-11 Score=103.69 Aligned_cols=106 Identities=16% Similarity=0.160 Sum_probs=93.5
Q ss_pred CCCccccCcCCCcEEecCCCCeEeCCCccCCCeEEEEEecCCCChhHHHHHHHHHHhHHHHHHcCCEEEEEeCCCHHHHH
Q 027245 66 SVSEDTKNLLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQAR 145 (226)
Q Consensus 66 ~~~~~~g~~apdf~L~D~~G~~v~Lsdl~~~~~vVVvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs~~~~~~i~ 145 (226)
.+.+..|+.+|+|+.....| .+.|.|++++.+.|++-.++.+.|.|..|+-.++.+.+||+++||++++.|+|+.+..+
T Consensus 3 ~~~l~lgd~~PNfea~Tt~g-~i~fhd~~gdSW~vLFSHPaDFTPVCTTElgr~Akl~pEF~KRnvKlialS~d~vesH~ 81 (224)
T KOG0854|consen 3 GPRLRLGDTVPNFEADTTVG-KIKFHDYLGDSWGVLFSHPADFTPVCTTELGRFAKLAPEFDKRNVKLIALSVDDVESHK 81 (224)
T ss_pred CCcccccCcCCCcccccccc-ceehhhhcccceEEEecCcccCCcchhHHHHHHHhhChhhhhcCceEEEeehhhHHHHH
Confidence 45677899999999977665 58999999999999999999999999999999999999999999999999999976554
Q ss_pred H-------HHHHcC--CceeEEecCChHHHHHcCCc
Q 027245 146 T-------FSEQTK--FKGEVYADPNHSSYEALSFV 172 (226)
Q Consensus 146 ~-------f~~~~~--~pfpll~Dp~~~ly~alGv~ 172 (226)
. |++..+ ++|||+.|+++++.-.|||.
T Consensus 82 ~Wi~DIks~~~~~~~~~~yPIIaD~~rela~~l~Ml 117 (224)
T KOG0854|consen 82 DWIKDIKSYAKVKNHSVPYPIIADPNRELAFLLNML 117 (224)
T ss_pred HHHHHHHHHHhccCCCCCCCeecCCchhhhhhhccc
Confidence 4 445545 89999999999999999984
No 53
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=99.11 E-value=5.3e-10 Score=82.71 Aligned_cols=82 Identities=15% Similarity=0.126 Sum_probs=66.0
Q ss_pred CeEEEEEecCCCChhHHHHHHHHHHhHHHHH-HcCCEEEEEeCCCH-HHHHHHHHHcCCceeEEecC---ChHHHHHcCC
Q 027245 97 RKAVVAFARHFGCVLCRKRADYLAAKKDVMD-ASGVALVLIGPGSV-EQARTFSEQTKFKGEVYADP---NHSSYEALSF 171 (226)
Q Consensus 97 ~~vVVvF~R~~~Cp~C~~el~~L~~~~~~l~-~~Gv~lVaIs~~~~-~~i~~f~~~~~~pfpll~Dp---~~~ly~alGv 171 (226)
+++++++||+.||+.|+++++.|.+.++++. +.++++|+|+.|.. +..+++.++.+.++..+... ...+.+.|++
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i 80 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYGI 80 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT-
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCCC
Confidence 4688999999999999999999999999998 78899999999874 78899999987777654443 5678999999
Q ss_pred cccccee
Q 027245 172 VSGVLVT 178 (226)
Q Consensus 172 ~~~~~~t 178 (226)
...+...
T Consensus 81 ~~iP~~~ 87 (95)
T PF13905_consen 81 NGIPTLV 87 (95)
T ss_dssp TSSSEEE
T ss_pred CcCCEEE
Confidence 8765443
No 54
>KOG0852 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=98.92 E-value=7.1e-09 Score=86.63 Aligned_cols=103 Identities=17% Similarity=0.100 Sum_probs=87.0
Q ss_pred cccCcCCCcE---EecCCCCeEeCCCccCCCeEEEEEecCCCChhHHHHHHHHHHhHHHHHHcCCEEEEEeCCCHHHHHH
Q 027245 70 DTKNLLDTVK---VYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQART 146 (226)
Q Consensus 70 ~~g~~apdf~---L~D~~G~~v~Lsdl~~~~~vVVvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs~~~~~~i~~ 146 (226)
.+..++|+|+ +.|-.-+.++|+++ .++.+|+.|++..+...|-.|+.++++.+++|++.|.+|+++|+|+...+.+
T Consensus 5 ~~~~p~p~fk~~aVVdG~f~e~~L~dy-~gkyvvlfFyplDftfVcPteIiafSd~~~eF~~~n~eVig~S~DS~fshlA 83 (196)
T KOG0852|consen 5 VVFKPAPDFKGTAVVDGEFKEIKLSDY-KGKYVVLFFYPLDFTFVCPTEIIAFSDRAPEFRKLNTEVLGISTDSVFSHLA 83 (196)
T ss_pred ccCCCCCCcceeEEEcCcceEEeehhh-cccEEEEEecCCceeeECchhhhhhhhhHHHHHhcCCeEEEEeccchhhhhh
Confidence 3445556664 45656679999997 4678888888899999999999999999999999999999999999988888
Q ss_pred HHH----HcCCc---eeEEecCChHHHHHcCCcc
Q 027245 147 FSE----QTKFK---GEVYADPNHSSYEALSFVS 173 (226)
Q Consensus 147 f~~----~~~~p---fpll~Dp~~~ly~alGv~~ 173 (226)
|+. +.|+. .|+++|+++++.+.|||-.
T Consensus 84 W~ntprk~gGlg~~~iPllsD~~~~IsrdyGvL~ 117 (196)
T KOG0852|consen 84 WINTPRKQGGLGPLNIPLLSDLNHEISRDYGVLK 117 (196)
T ss_pred HhcCchhhCCcCccccceeeccchhhHHhcCcee
Confidence 874 44554 8999999999999999954
No 55
>KOG0541 consensus Alkyl hydroperoxide reductase/peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=98.90 E-value=2.9e-09 Score=87.41 Aligned_cols=111 Identities=14% Similarity=0.190 Sum_probs=94.8
Q ss_pred CCCCccccCcCCC--cEEe-cCC----CCeEeCCCccCCCeEEEEEecCCCChh-HHHHHHHHHHhHHHHHHcCCE-EEE
Q 027245 65 PSVSEDTKNLLDT--VKVY-DVN----GNAIPISDLWKDRKAVVAFARHFGCVL-CRKRADYLAAKKDVMDASGVA-LVL 135 (226)
Q Consensus 65 ~~~~~~~g~~apd--f~L~-D~~----G~~v~Lsdl~~~~~vVVvF~R~~~Cp~-C~~el~~L~~~~~~l~~~Gv~-lVa 135 (226)
.+...++|+.+|+ ..+. |.. +.++++++|.+++|+||+=.++++.|. |+.++|-+.+..++|+++||+ |++
T Consensus 5 ~~a~i~vGd~~p~~~is~~~~~~~~~~~~tv~~~~l~~GKKvIifGvPgAFtPtCs~~HvPGyi~~a~elksKGVd~iic 84 (171)
T KOG0541|consen 5 VMAPIAVGDTLPSGTISLFEDEPEQLQGNTVNVSSLFKGKKVILFGVPGAFTPTCSSSHVPGYIEKADELKSKGVDEIIC 84 (171)
T ss_pred ccccccccCccccccchhhccCccccccceEEhHHhcCCceEEEEcCCCccCCccccccCchHHHHHHHHHhcCCcEEEE
Confidence 3445788999999 5433 322 339999999999999999999999999 688999999999999999998 888
Q ss_pred EeCCCHHHHHHHHHHcCCc--eeEEecCChHHHHHcCCcccc
Q 027245 136 IGPGSVEQARTFSEQTKFK--GEVYADPNHSSYEALSFVSGV 175 (226)
Q Consensus 136 Is~~~~~~i~~f~~~~~~p--fpll~Dp~~~ly~alGv~~~~ 175 (226)
|+.+++-.+++|++.++-. ..+++|++++..+.+|+.-..
T Consensus 85 vSVnDpFv~~aW~k~~g~~~~V~f~aD~~g~ftk~lgleld~ 126 (171)
T KOG0541|consen 85 VSVNDPFVMKAWAKSLGANDHVKFVADPAGEFTKSLGLELDL 126 (171)
T ss_pred EecCcHHHHHHHHhhcCccceEEEEecCCCceeeeccceeee
Confidence 9999999999999999874 568999999999999987543
No 56
>COG2077 Tpx Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=98.84 E-value=2.2e-08 Score=81.86 Aligned_cols=103 Identities=9% Similarity=0.138 Sum_probs=92.3
Q ss_pred CccccCcCCCcEEecCCCCeEeCCCccCCCeEEEEEecCCCChhHHHHHHHHHHhHHHHHHcCCEEEEEeCCCHHHHHHH
Q 027245 68 SEDTKNLLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTF 147 (226)
Q Consensus 68 ~~~~g~~apdf~L~D~~G~~v~Lsdl~~~~~vVVvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs~~~~~~i~~f 147 (226)
.+++|+++|+|++.+.+.+.+++.++ ++++.||.-|+.-..|.|-.+.+.+++...++. ++.|+.||.|-|-..+.|
T Consensus 17 ~~~vGd~ap~ftl~~~dL~~v~l~~~-~gk~~vi~v~PSiDT~VC~~qvr~Fn~~aa~~~--~~~Vl~IS~DLPFAq~Rf 93 (158)
T COG2077 17 EPQVGDKAPDFTLVGKDLNDVSLADF-AGKKKVISVFPSIDTPVCATQVRKFNEEAAKLG--NTVVLCISMDLPFAQKRF 93 (158)
T ss_pred CCccCCcCCceEEEcCcccceecccc-CCceEEEEEccCCCCchhhHHHHHHHHHHhccC--CcEEEEEeCCChhHHhhh
Confidence 36899999999999999999999996 678889999999999999999999999888664 599999999999999999
Q ss_pred HHHcCCc-eeEEec-CChHHHHHcCCcc
Q 027245 148 SEQTKFK-GEVYAD-PNHSSYEALSFVS 173 (226)
Q Consensus 148 ~~~~~~p-fpll~D-p~~~ly~alGv~~ 173 (226)
|...|+. .-.++| .++.+.++||+.-
T Consensus 94 C~aeGi~nv~~lSd~r~~~Fge~yGv~I 121 (158)
T COG2077 94 CGAEGIENVITLSDFRDRAFGENYGVLI 121 (158)
T ss_pred hhhcCcccceEhhhhhhhhhhHhhCEEe
Confidence 9999998 668888 5677889999864
No 57
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=98.80 E-value=1.3e-08 Score=83.65 Aligned_cols=48 Identities=17% Similarity=0.263 Sum_probs=41.3
Q ss_pred CCeEeCCCccCCCeEEEEEecCCCChhHHHHHHHHHHhHHHHHHcCCEEEEEeCCCH
Q 027245 85 GNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSV 141 (226)
Q Consensus 85 G~~v~Lsdl~~~~~vVVvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs~~~~ 141 (226)
|+.+.++++ .|++||++|||+|++|+|.|++.++++ |+.|++|+.++.
T Consensus 44 G~~~~l~~~------~lvnFWAsWCppCr~e~P~L~~l~~~~---~~~Vi~Vs~d~~ 91 (153)
T TIGR02738 44 GRHANQDDY------ALVFFYQSTCPYCHQFAPVLKRFSQQF---GLPVYAFSLDGQ 91 (153)
T ss_pred chhhhcCCC------EEEEEECCCChhHHHHHHHHHHHHHHc---CCcEEEEEeCCC
Confidence 788888764 288999999999999999999998865 689999998864
No 58
>COG0678 AHP1 Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=98.80 E-value=9.9e-09 Score=83.84 Aligned_cols=107 Identities=15% Similarity=0.111 Sum_probs=94.6
Q ss_pred ccccCcCCCcEEecC------CC-CeEeCCCccCCCeEEEEEecCCCChhHHH-HHHHHHHhHHHHHHcCCE-EEEEeCC
Q 027245 69 EDTKNLLDTVKVYDV------NG-NAIPISDLWKDRKAVVAFARHFGCVLCRK-RADYLAAKKDVMDASGVA-LVLIGPG 139 (226)
Q Consensus 69 ~~~g~~apdf~L~D~------~G-~~v~Lsdl~~~~~vVVvF~R~~~Cp~C~~-el~~L~~~~~~l~~~Gv~-lVaIs~~ 139 (226)
..+|+++|..++... +| ..++..++++++++||+-.++++.|.|.. ++|.+.+++++|+++||. |++|+..
T Consensus 3 ~~vg~klP~vtf~tr~~~~~~~~~~~~ts~~lf~gKkVvlf~lPGAFTPTCS~~hlPgY~~~~d~f~~kGVD~I~cVSVN 82 (165)
T COG0678 3 IMVGKKLPAVTFKTRVGDETADGWVDVTTDDLFKGKKVVLFSLPGAFTPTCSSSHLPGYLELADEFKAKGVDEIYCVSVN 82 (165)
T ss_pred cccCCcCCceEeEEeeccccCCCcccccHHHhcCCCEEEEEeCCCccCCCcccccCccHHHHHHHHHHcCCceEEEEEeC
Confidence 467999999988754 22 46778899999999999999999999988 999999999999999998 8999999
Q ss_pred CHHHHHHHHHHcCCc--eeEEecCChHHHHHcCCcccc
Q 027245 140 SVEQARTFSEQTKFK--GEVYADPNHSSYEALSFVSGV 175 (226)
Q Consensus 140 ~~~~i~~f~~~~~~p--fpll~Dp~~~ly~alGv~~~~ 175 (226)
+.--..+|++..+.. ..+++|.+++.-+++||.-..
T Consensus 83 D~FVm~AWak~~g~~~~I~fi~Dg~geFTk~~Gm~~d~ 120 (165)
T COG0678 83 DAFVMNAWAKSQGGEGNIKFIPDGNGEFTKAMGMLVDK 120 (165)
T ss_pred cHHHHHHHHHhcCCCccEEEecCCCchhhhhcCceeec
Confidence 999999999999987 568999999999999997553
No 59
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=98.65 E-value=2.5e-07 Score=77.05 Aligned_cols=86 Identities=16% Similarity=0.264 Sum_probs=69.5
Q ss_pred ccCcCCCcEEecCCCCeEeCCCccCCCeEEEEEecCCCCh-hHHHHHHHHHHhHHHHHHc--CCEEEEEeCCC----HHH
Q 027245 71 TKNLLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCV-LCRKRADYLAAKKDVMDAS--GVALVLIGPGS----VEQ 143 (226)
Q Consensus 71 ~g~~apdf~L~D~~G~~v~Lsdl~~~~~vVVvF~R~~~Cp-~C~~el~~L~~~~~~l~~~--Gv~lVaIs~~~----~~~ 143 (226)
.....++|++.|.+|++++++++ .++++|++|-.+.|| .|-..+..|++..+++.+. .+++|.|+.|+ ++.
T Consensus 28 ~~~~~~~f~L~d~~G~~~~~~~~--~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvDP~~DTp~~ 105 (174)
T PF02630_consen 28 NPRIVPDFTLTDQDGKTVTLDDL--KGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVDPERDTPEV 105 (174)
T ss_dssp TSCSSST-EEEETTSSEEEGGGG--TTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESSTTTC-HHH
T ss_pred CCccCCCcEEEcCCCCEecHHHh--CCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeCCCCCCHHH
Confidence 45567899999999999999997 456777778888885 8999999999999988764 68999999875 689
Q ss_pred HHHHHHHcCCceeEE
Q 027245 144 ARTFSEQTKFKGEVY 158 (226)
Q Consensus 144 i~~f~~~~~~pfpll 158 (226)
+++|++.++-.+.-+
T Consensus 106 L~~Y~~~~~~~~~~l 120 (174)
T PF02630_consen 106 LKKYAKKFGPDFIGL 120 (174)
T ss_dssp HHHHHHCHTTTCEEE
T ss_pred HHHHHHhcCCCccee
Confidence 999999987666533
No 60
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=98.64 E-value=2.3e-08 Score=80.75 Aligned_cols=85 Identities=13% Similarity=0.136 Sum_probs=62.9
Q ss_pred EEecCCCCeEeCCCccCCCeEEEEEecCCCChhHHHHHHHHHHhHHHHHHcCCEEEEEeCCCHHHHHHHHHHcC---Cce
Q 027245 79 KVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTK---FKG 155 (226)
Q Consensus 79 ~L~D~~G~~v~Lsdl~~~~~vVVvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs~~~~~~i~~f~~~~~---~pf 155 (226)
++.|.+++...+.+....++++||+||+.||+.|+..++.|.++.+++.+ .+.++.|..+... ....+++++ +|.
T Consensus 2 ~~~~~~~~~~~~~~a~~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~-~~~~v~v~vd~~~-~~~~~~~~~V~~iPt 79 (142)
T cd02950 2 SLEQLAASSTPPEVALSNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGD-QVNFVMLNVDNPK-WLPEIDRYRVDGIPH 79 (142)
T ss_pred ChHHHhhccCCHHHHHhCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhcc-CeeEEEEEcCCcc-cHHHHHHcCCCCCCE
Confidence 34566677777777666678899999999999999999999999988864 4788888887642 123344444 566
Q ss_pred eEEecCChHH
Q 027245 156 EVYADPNHSS 165 (226)
Q Consensus 156 pll~Dp~~~l 165 (226)
-++.|+++++
T Consensus 80 ~v~~~~~G~~ 89 (142)
T cd02950 80 FVFLDREGNE 89 (142)
T ss_pred EEEECCCCCE
Confidence 6888877654
No 61
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=98.58 E-value=2.4e-07 Score=70.31 Aligned_cols=56 Identities=11% Similarity=0.006 Sum_probs=47.4
Q ss_pred CeEEEEEecCCCChhHHHHHHHHHHhHHHHHHcCCEEEEEeCCCHHHHHHHHHHcCCc
Q 027245 97 RKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFK 154 (226)
Q Consensus 97 ~~vVVvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs~~~~~~i~~f~~~~~~p 154 (226)
+++||+.|++.||++|+..++.|.+..+++ .++.++.|..+.......+++++++.
T Consensus 15 ~k~vvv~F~a~wC~~C~~~~p~l~~la~~~--~~v~~~~vd~d~~~~~~~l~~~~~V~ 70 (103)
T cd02985 15 GRLVVLEFALKHSGPSVKIYPTMVKLSRTC--NDVVFLLVNGDENDSTMELCRREKII 70 (103)
T ss_pred CCEEEEEEECCCCHhHHHHhHHHHHHHHHC--CCCEEEEEECCCChHHHHHHHHcCCC
Confidence 578999999999999999999999998888 57889999988765566777777654
No 62
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=98.49 E-value=2.1e-07 Score=76.74 Aligned_cols=102 Identities=12% Similarity=0.099 Sum_probs=81.6
Q ss_pred CcEEecCCCCeEeCCCccCCCeEEEEEecCCCChhHHHHHHHHHHhHHHHHHcC--CEEEEEeCCCH-HHHHHHHHHcCC
Q 027245 77 TVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASG--VALVLIGPGSV-EQARTFSEQTKF 153 (226)
Q Consensus 77 df~L~D~~G~~v~Lsdl~~~~~vVVvF~R~~~Cp~C~~el~~L~~~~~~l~~~G--v~lVaIs~~~~-~~i~~f~~~~~~ 153 (226)
...|.+.+|..+..++.+++ ++|.++|.+.|||+||...|.|.+.|+++++.+ ..||-||.|.. +..+.|.+++..
T Consensus 14 g~~l~~~~~~~~~~~~~l~g-KvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~ 92 (157)
T KOG2501|consen 14 GNRLRKQDGTEVLASEALQG-KVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHG 92 (157)
T ss_pred CCeeeccCCccchHhHhhCC-cEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCC
Confidence 36788889999888866654 899999999999999999999999999998754 77999999865 678888887665
Q ss_pred ce---eEEecCChHHHHHcCCccccceee
Q 027245 154 KG---EVYADPNHSSYEALSFVSGVLVTF 179 (226)
Q Consensus 154 pf---pll~Dp~~~ly~alGv~~~~~~t~ 179 (226)
+- |..-|...++-+.|++..-+....
T Consensus 93 ~W~~iPf~d~~~~~l~~ky~v~~iP~l~i 121 (157)
T KOG2501|consen 93 DWLAIPFGDDLIQKLSEKYEVKGIPALVI 121 (157)
T ss_pred CeEEecCCCHHHHHHHHhcccCcCceeEE
Confidence 53 344455678888899887665544
No 63
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1.11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....
Probab=98.47 E-value=1.1e-06 Score=68.43 Aligned_cols=80 Identities=14% Similarity=0.257 Sum_probs=67.3
Q ss_pred CcEEecCCCCeEeCCCccCCCeEEEEEecCCCChhHHHHHHHHHHhHHHHHHcCCEEEEEeCC--------CHHHHHHHH
Q 027245 77 TVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPG--------SVEQARTFS 148 (226)
Q Consensus 77 df~L~D~~G~~v~Lsdl~~~~~vVVvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs~~--------~~~~i~~f~ 148 (226)
+|++.|.+|+.++|+++ +++ ++||.=-++-|..-. +..+|+++++++.+.|..|+++-+. +.+++++|+
T Consensus 3 df~~~~~~G~~v~l~~y-~Gk-v~LIVNvAs~Cg~t~-qy~~L~~L~~ky~~~gl~ILaFPcnqFg~QEp~~~~ei~~~~ 79 (108)
T PF00255_consen 3 DFSAKDIDGKPVSLSKY-KGK-VLLIVNVASKCGYTK-QYKQLNELYEKYKDKGLEILAFPCNQFGNQEPGSNEEIKEFC 79 (108)
T ss_dssp GSEEEBTTSSEEEGGGG-TTS-EEEEEEEESSSTTHH-HHHHHHHHHHHHGGGTEEEEEEEBSTTTTTTSSCHHHHHHHH
T ss_pred ceeeeCCCCCEECHHHc-CCC-EEEEEecccccCCcc-ccHHHHHHHHHHhcCCeEEEeeehHHhccccCCCHHHHHHHH
Confidence 68999999999999997 454 555555689999999 8999999999999999999999765 357899999
Q ss_pred HH-cCCceeEEe
Q 027245 149 EQ-TKFKGEVYA 159 (226)
Q Consensus 149 ~~-~~~pfpll~ 159 (226)
.. ++..|||+.
T Consensus 80 ~~~~~~~F~vf~ 91 (108)
T PF00255_consen 80 KEKFGVTFPVFE 91 (108)
T ss_dssp CHCHT-SSEEBS
T ss_pred HhccCCcccceE
Confidence 88 688999875
No 64
>PF05988 DUF899: Bacterial protein of unknown function (DUF899); InterPro: IPR010296 This family consists of uncharacterised bacterial proteins of unknown function which are thioredoxin-like.
Probab=98.46 E-value=7e-07 Score=76.81 Aligned_cols=98 Identities=13% Similarity=0.266 Sum_probs=82.5
Q ss_pred CcCCCcEEecCCCCeEeCCCccCCCeEEEEEec------CCCChhHHHHHHHHHHhHHHHHHcCCEEEEEeCCCHHHHHH
Q 027245 73 NLLDTVKVYDVNGNAIPISDLWKDRKAVVAFAR------HFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQART 146 (226)
Q Consensus 73 ~~apdf~L~D~~G~~v~Lsdl~~~~~vVVvF~R------~~~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs~~~~~~i~~ 146 (226)
..-.+..+...+|. ++|.||++++..+||... ...||.|.-.+..+......|.+.++.+++|+..+.+++.+
T Consensus 44 ~v~~~Y~F~g~~G~-v~L~dLF~Gr~qLivyhfM~~p~~~~~C~gCs~~~D~~~g~l~hL~~rd~tfa~vSraP~~~i~a 122 (211)
T PF05988_consen 44 EVDKDYVFDGPDGP-VSLADLFEGRRQLIVYHFMFGPDWDEGCPGCSFWADHIDGALRHLHARDTTFAVVSRAPLEKIEA 122 (211)
T ss_pred cCCCCeEEeCCCCc-ccHHHHcCCCceEEEEeeccCCCCCCCCCchhhhHhhhhhhHHHHHhCCceEEEEeCCCHHHHHH
Confidence 33345666666666 999999998865544332 46999999999999988999999999999999999999999
Q ss_pred HHHHcCCceeEEecCChHHHHHcCC
Q 027245 147 FSEQTKFKGEVYADPNHSSYEALSF 171 (226)
Q Consensus 147 f~~~~~~pfpll~Dp~~~ly~alGv 171 (226)
|+++-||.||.|+.-+...-.-|++
T Consensus 123 fk~rmGW~~pw~Ss~gs~Fn~D~~~ 147 (211)
T PF05988_consen 123 FKRRMGWTFPWYSSYGSDFNYDFGV 147 (211)
T ss_pred HHHhcCCCceEEEcCCCcccccccc
Confidence 9999999999999988877777776
No 65
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=98.40 E-value=5.8e-07 Score=68.03 Aligned_cols=54 Identities=7% Similarity=0.166 Sum_probs=44.0
Q ss_pred cCCCeEEEEEecCCCChhHHHHHHHHHHhHHHHHHcCCEEEEEeCCCHHHHHHH
Q 027245 94 WKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTF 147 (226)
Q Consensus 94 ~~~~~vVVvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs~~~~~~i~~f 147 (226)
...++.+|+.|++.||++|+..++.|.+.++++.+..+.++.|..+..+.+++|
T Consensus 14 i~~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d~~~~~~~~ 67 (102)
T cd02948 14 LSNKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEADTIDTLKRY 67 (102)
T ss_pred HccCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCCCHHHHHHc
Confidence 334567889999999999999999999998888766688888998865555444
No 66
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=98.29 E-value=2.8e-06 Score=69.83 Aligned_cols=83 Identities=16% Similarity=0.207 Sum_probs=71.9
Q ss_pred cCCCcEEecCCCCeEeCCCccCCCeEEEEEecCCCChhHHHHHHHHHHhHHHHHHcCCEEEEEeCC--------CHHHHH
Q 027245 74 LLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPG--------SVEQAR 145 (226)
Q Consensus 74 ~apdf~L~D~~G~~v~Lsdl~~~~~vVVvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs~~--------~~~~i~ 145 (226)
.+-||++.|.+|++++|+++ .++||||.--++-|.+-- +-..|+.+|+++++.|..|+++-|. +.++++
T Consensus 4 ~~yd~~~~~~~G~~~~l~~~--~GkVlLIVNtASkCGfTp-QYegLe~Ly~ky~~~Gf~VLgFPcNQF~~QEPg~~eEI~ 80 (162)
T COG0386 4 SIYDFSVKDIDGEPVSLSDY--KGKVLLIVNTASKCGFTP-QYEGLEALYKKYKDKGFEVLGFPCNQFGGQEPGSDEEIA 80 (162)
T ss_pred ccccceeeccCCCCccHHHh--CCcEEEEEEcccccCCcH-hHHHHHHHHHHHhhCCcEEEeccccccccCCCCCHHHHH
Confidence 45689999999999999996 456777777899999987 6789999999999999999999764 568999
Q ss_pred HHHHH-cCCceeEEe
Q 027245 146 TFSEQ-TKFKGEVYA 159 (226)
Q Consensus 146 ~f~~~-~~~pfpll~ 159 (226)
+||+. ++.+|||+.
T Consensus 81 ~fC~~~YgVtFp~f~ 95 (162)
T COG0386 81 KFCQLNYGVTFPMFS 95 (162)
T ss_pred HHHHhccCceeeeee
Confidence 99965 578999986
No 67
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=98.28 E-value=4.8e-07 Score=80.69 Aligned_cols=78 Identities=18% Similarity=0.204 Sum_probs=57.3
Q ss_pred CCeEeCCCccCCCeEEEEEecCCCChhHHHHHHHHHHhHHHHHHcCCEEEEEeCCCHHHHHHHHHHcCCceeEEecCChH
Q 027245 85 GNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKGEVYADPNHS 164 (226)
Q Consensus 85 G~~v~Lsdl~~~~~vVVvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs~~~~~~i~~f~~~~~~pfpll~Dp~~~ 164 (226)
.+...++++ .++.+|++|++.||++|+.+++.|.+..+++ |+.|++|+.|.... . .||.+ |.+..
T Consensus 156 ~~~~~l~~l--~~k~~Lv~F~AswCp~C~~~~P~L~~la~~y---g~~Vi~VsvD~~~~-~--------~fp~~-~~d~~ 220 (271)
T TIGR02740 156 QKDRVMKDL--AKKSGLFFFFKSDCPYCHQQAPILQAFEDRY---GIEVLPVSVDGGPL-P--------GFPNA-RPDAG 220 (271)
T ss_pred HHHHHHHHh--cCCeEEEEEECCCCccHHHHhHHHHHHHHHc---CcEEEEEeCCCCcc-c--------cCCcc-cCCHH
Confidence 345677776 3457888899999999999999999998865 68999999986421 0 15544 55666
Q ss_pred HHHHcCCccccce
Q 027245 165 SYEALSFVSGVLV 177 (226)
Q Consensus 165 ly~alGv~~~~~~ 177 (226)
+.+.||+...+..
T Consensus 221 la~~~gV~~vPtl 233 (271)
T TIGR02740 221 QAQQLKIRTVPAV 233 (271)
T ss_pred HHHHcCCCcCCeE
Confidence 7888888655444
No 68
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=98.23 E-value=2.7e-06 Score=64.49 Aligned_cols=42 Identities=7% Similarity=0.017 Sum_probs=36.1
Q ss_pred CCeEEEEEecCCCChhHHHHHHHHHHhHHHHHHcCCEEEEEeCC
Q 027245 96 DRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPG 139 (226)
Q Consensus 96 ~~~vVVvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs~~ 139 (226)
.++++||.|++.||++|+..++.|.+..+++. ++.++.|..+
T Consensus 17 ~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~--~~~~~~vd~~ 58 (100)
T cd02999 17 REDYTAVLFYASWCPFSASFRPHFNALSSMFP--QIRHLAIEES 58 (100)
T ss_pred CCCEEEEEEECCCCHHHHhHhHHHHHHHHHhc--cCceEEEECC
Confidence 35678999999999999999999999998885 5778888766
No 69
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=98.12 E-value=1.3e-05 Score=61.58 Aligned_cols=47 Identities=13% Similarity=0.159 Sum_probs=41.2
Q ss_pred CCeEEEEEecCCCChhHHHHHHHHHHhHHHHHHcCCEEEEEeCCCHH
Q 027245 96 DRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVE 142 (226)
Q Consensus 96 ~~~vVVvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs~~~~~ 142 (226)
.++++||+|++.||+.|+...+.+.+..++++..++.+..|.++...
T Consensus 23 ~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~~ 69 (111)
T cd02963 23 FKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHER 69 (111)
T ss_pred CCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccccH
Confidence 35789999999999999999999999999998778999999887643
No 70
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=98.11 E-value=4.2e-06 Score=65.08 Aligned_cols=67 Identities=16% Similarity=0.286 Sum_probs=45.0
Q ss_pred CCC-eEEEEEecCCCChhHHHHHHHHH---HhHHHHHHcCCEEEEEeCCCHHH----------HHHHHHHc---CCceeE
Q 027245 95 KDR-KAVVAFARHFGCVLCRKRADYLA---AKKDVMDASGVALVLIGPGSVEQ----------ARTFSEQT---KFKGEV 157 (226)
Q Consensus 95 ~~~-~vVVvF~R~~~Cp~C~~el~~L~---~~~~~l~~~Gv~lVaIs~~~~~~----------i~~f~~~~---~~pfpl 157 (226)
+++ ++|+++|++.||++|++..+.+. +..+.++ .++.++.|..+.... ..++++++ ++|.-+
T Consensus 11 ~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~-~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~v~~~Pt~~ 89 (125)
T cd02951 11 ADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIR-AHFVVVYINIDGDKEVTDFDGEALSEKELARKYRVRFTPTVI 89 (125)
T ss_pred HcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHH-hheEEEEEEccCCceeeccCCCCccHHHHHHHcCCccccEEE
Confidence 456 78888999999999999998886 3444454 478888888775311 12333333 455557
Q ss_pred EecCC
Q 027245 158 YADPN 162 (226)
Q Consensus 158 l~Dp~ 162 (226)
+.|++
T Consensus 90 ~~~~~ 94 (125)
T cd02951 90 FLDPE 94 (125)
T ss_pred EEcCC
Confidence 77776
No 71
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=98.09 E-value=1.1e-05 Score=61.52 Aligned_cols=44 Identities=9% Similarity=0.175 Sum_probs=39.3
Q ss_pred CeEEEEEecCCCChhHHHHHHHHHHhHHHHHHcCCEEEEEeCCC
Q 027245 97 RKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGS 140 (226)
Q Consensus 97 ~~vVVvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs~~~ 140 (226)
+++++++|++.||++|+...+.+.+..+++++.++.+..|.++.
T Consensus 21 ~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~ 64 (109)
T cd02993 21 NQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADG 64 (109)
T ss_pred CCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCc
Confidence 46788888999999999999999999998987789999999886
No 72
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=98.07 E-value=2.9e-05 Score=66.67 Aligned_cols=95 Identities=17% Similarity=0.213 Sum_probs=72.7
Q ss_pred CcEEecCCCCeEeCCCccCCCeEEEEEecCCCCh-hHHHHHHHHHHhHHHHH---HcCCEEEEEeCCC----HHHHHHHH
Q 027245 77 TVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCV-LCRKRADYLAAKKDVMD---ASGVALVLIGPGS----VEQARTFS 148 (226)
Q Consensus 77 df~L~D~~G~~v~Lsdl~~~~~vVVvF~R~~~Cp-~C~~el~~L~~~~~~l~---~~Gv~lVaIs~~~----~~~i~~f~ 148 (226)
+|+|.|++|+.+++.++ ++++.|+||-.+.|| .|-..+..|.+..+++. ...+++|.|+.|+ ++.+++|.
T Consensus 49 ~f~l~d~~G~~~~~~~l--~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPerDtp~~lk~Y~ 126 (207)
T COG1999 49 DFELTDQDGKPFTLKDL--KGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPERDTPEVLKKYA 126 (207)
T ss_pred ceeeecCCCCEeecccc--CCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCCCCCHHHHHHHh
Confidence 79999999999999998 445667777788888 79999999999998887 4567889999875 68899999
Q ss_pred H-HcCCceeEEec---CChHHHHHcCCcc
Q 027245 149 E-QTKFKGEVYAD---PNHSSYEALSFVS 173 (226)
Q Consensus 149 ~-~~~~pfpll~D---p~~~ly~alGv~~ 173 (226)
+ ...-.+.-+.. ...++.++|++..
T Consensus 127 ~~~~~~~~~~ltg~~~~~~~~~k~~~V~~ 155 (207)
T COG1999 127 ELNFDPRWIGLTGTPEQIEEVAKAYGVFY 155 (207)
T ss_pred cccCCCCeeeeeCCHHHHHHHHHHhccee
Confidence 8 32222433333 3456788888764
No 73
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=98.06 E-value=1e-05 Score=59.65 Aligned_cols=63 Identities=8% Similarity=-0.100 Sum_probs=45.4
Q ss_pred CeEEEEEecCCCChhHHHHHHHHHHhHHHHHHcCCEEEEEeCCCHHHHHHHHHHcCCceeEEec
Q 027245 97 RKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKGEVYAD 160 (226)
Q Consensus 97 ~~vVVvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs~~~~~~i~~f~~~~~~pfpll~D 160 (226)
++.+|++|++.||+.|+...+.+.+..+++.. .+.++.|.++....+.+-..-.++|--++.+
T Consensus 12 ~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~ 74 (96)
T cd02956 12 QVPVVVDFWAPRSPPSKELLPLLERLAEEYQG-QFVLAKVNCDAQPQIAQQFGVQALPTVYLFA 74 (96)
T ss_pred CCeEEEEEECCCChHHHHHHHHHHHHHHHhCC-cEEEEEEeccCCHHHHHHcCCCCCCEEEEEe
Confidence 46889999999999999999999999988864 4777888887654333222223455445555
No 74
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=98.03 E-value=1.1e-05 Score=60.70 Aligned_cols=69 Identities=12% Similarity=0.120 Sum_probs=48.6
Q ss_pred CCCeEEEEEecCCCChhHHHHHHHH---HHhHHHHHHcCCEEEEEeCCCH-HHHHHHHHHcC---CceeEEecC-ChH
Q 027245 95 KDRKAVVAFARHFGCVLCRKRADYL---AAKKDVMDASGVALVLIGPGSV-EQARTFSEQTK---FKGEVYADP-NHS 164 (226)
Q Consensus 95 ~~~~vVVvF~R~~~Cp~C~~el~~L---~~~~~~l~~~Gv~lVaIs~~~~-~~i~~f~~~~~---~pfpll~Dp-~~~ 164 (226)
+.++.+||.|++.||++|+...+.+ .+..+.+.+ ++.++.|..+.. .....++++++ +|.-++.|+ +++
T Consensus 9 ~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~~~~~~~g~ 85 (104)
T cd02953 9 AQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKK-DVVLLRADWTKNDPEITALLKRFGVFGPPTYLFYGPGGEP 85 (104)
T ss_pred HcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhC-CeEEEEEecCCCCHHHHHHHHHcCCCCCCEEEEECCCCCC
Confidence 4567888889999999999998877 455666655 788888887642 23456666655 454567776 444
No 75
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=97.99 E-value=2.6e-05 Score=58.78 Aligned_cols=45 Identities=13% Similarity=0.079 Sum_probs=36.8
Q ss_pred CeEEEEEecCCCChhHHHHHHHHHHhHHHHHHcC--CEEEEEeCCCH
Q 027245 97 RKAVVAFARHFGCVLCRKRADYLAAKKDVMDASG--VALVLIGPGSV 141 (226)
Q Consensus 97 ~~vVVvF~R~~~Cp~C~~el~~L~~~~~~l~~~G--v~lVaIs~~~~ 141 (226)
++.++++|++.||++|+...+.|.+..+++++.+ +.+..+.++..
T Consensus 15 ~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~ 61 (104)
T cd03000 15 EDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAY 61 (104)
T ss_pred CCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccC
Confidence 4578899999999999999999999998887654 66666776653
No 76
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=97.98 E-value=1.3e-05 Score=62.60 Aligned_cols=71 Identities=14% Similarity=0.247 Sum_probs=48.2
Q ss_pred CCeEEEEEecCCCChhHHHHHHHHHHhHHHHHHcCCEEEEEeCCCH--HHHHHHHHHc-CCceeEEecCChHHHH
Q 027245 96 DRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSV--EQARTFSEQT-KFKGEVYADPNHSSYE 167 (226)
Q Consensus 96 ~~~vVVvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs~~~~--~~i~~f~~~~-~~pfpll~Dp~~~ly~ 167 (226)
.++.|+|+|++.||++|+...+.+.+..+..+ .+..++.|..+.. ...+.|.... ++|.-++.|+++++.+
T Consensus 18 ~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~-~~~~fv~v~vd~~~~~~~~~~~~~g~~vPt~~f~~~~Gk~~~ 91 (117)
T cd02959 18 SGKPLMLLIHKTWCGACKALKPKFAESKEISE-LSHNFVMVNLEDDEEPKDEEFSPDGGYIPRILFLDPSGDVHP 91 (117)
T ss_pred cCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHh-hcCcEEEEEecCCCCchhhhcccCCCccceEEEECCCCCCch
Confidence 35678888899999999999999888655433 3445555555432 2334443332 2788899999887655
No 77
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=97.97 E-value=8.1e-06 Score=60.43 Aligned_cols=47 Identities=9% Similarity=0.036 Sum_probs=38.7
Q ss_pred CCCeEEEEEecCCCChhHHHHHHHHHHhHHHHHH--cCCEEEEEeCCCHH
Q 027245 95 KDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDA--SGVALVLIGPGSVE 142 (226)
Q Consensus 95 ~~~~vVVvF~R~~~Cp~C~~el~~L~~~~~~l~~--~Gv~lVaIs~~~~~ 142 (226)
.+++ +++.|++.||+.|+..++.+.+..++++. ..+.++.|.++...
T Consensus 15 ~~~~-~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~ 63 (102)
T cd03005 15 AEGN-HFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHR 63 (102)
T ss_pred hcCC-EEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCCh
Confidence 3444 78888999999999999999999998875 46888888887654
No 78
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=97.94 E-value=1.7e-05 Score=59.24 Aligned_cols=56 Identities=11% Similarity=0.056 Sum_probs=43.8
Q ss_pred cCCCeEEEEEecCCCChhHHHHHHHHHHhHHHHHHcCCEEEEEeCCCHHHHHHHHHHcCC
Q 027245 94 WKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKF 153 (226)
Q Consensus 94 ~~~~~vVVvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs~~~~~~i~~f~~~~~~ 153 (226)
..+++.++++|++.||+.|+...+.+.+..++++. .+.+..|.++... ..++++++
T Consensus 15 v~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~-~~~~~~vd~~~~~---~~~~~~~v 70 (101)
T cd03003 15 VNSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDG-VIRIGAVNCGDDR---MLCRSQGV 70 (101)
T ss_pred hcCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcC-ceEEEEEeCCccH---HHHHHcCC
Confidence 34457889999999999999999999999988864 4788899998643 34455554
No 79
>PRK10996 thioredoxin 2; Provisional
Probab=97.91 E-value=5.1e-06 Score=66.65 Aligned_cols=71 Identities=14% Similarity=0.068 Sum_probs=49.1
Q ss_pred eCCCccCCCeEEEEEecCCCChhHHHHHHHHHHhHHHHHHcCCEEEEEeCCCHHHHHHHHHHcCCceeEEec
Q 027245 89 PISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKGEVYAD 160 (226)
Q Consensus 89 ~Lsdl~~~~~vVVvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs~~~~~~i~~f~~~~~~pfpll~D 160 (226)
.+.++.+.++.++++|++.||++|+...+.|.+..+++.+ ++.++.|..+....+.+-..-.++|.-++.+
T Consensus 44 ~~~~~i~~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~-~v~~~~vd~~~~~~l~~~~~V~~~Ptlii~~ 114 (139)
T PRK10996 44 TLDKLLQDDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSG-KVRFVKVNTEAERELSARFRIRSIPTIMIFK 114 (139)
T ss_pred HHHHHHhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCC-CeEEEEEeCCCCHHHHHhcCCCccCEEEEEE
Confidence 4445555678899999999999999999999998887654 5888888877654332222233445434444
No 80
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=97.91 E-value=4.5e-05 Score=57.26 Aligned_cols=66 Identities=11% Similarity=0.063 Sum_probs=47.2
Q ss_pred CCeEEEEEecCCCChhHHHHHHHHHHhHHHHHHcCCEEEEEeCCCHHHHHHHHHHcC---CceeEEecCCh
Q 027245 96 DRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTK---FKGEVYADPNH 163 (226)
Q Consensus 96 ~~~vVVvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs~~~~~~i~~f~~~~~---~pfpll~Dp~~ 163 (226)
.++.+|+.|++.||+.|+...+.+.+..+++. ..+.++.|.++..+ ...++++++ +|.-++.++..
T Consensus 17 ~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~-~~~~~~~v~~~~~~-~~~~~~~~~i~~~Pt~~~~~~~~ 85 (109)
T cd03002 17 TNYTTLVEFYAPWCGHCKNLKPEYAKAAKELD-GLVQVAAVDCDEDK-NKPLCGKYGVQGFPTLKVFRPPK 85 (109)
T ss_pred CCCeEEEEEECCCCHHHHhhChHHHHHHHHhc-CCceEEEEecCccc-cHHHHHHcCCCcCCEEEEEeCCC
Confidence 34668889999999999999999999988875 35888889988631 223444444 44445556554
No 81
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=97.89 E-value=4.1e-05 Score=57.07 Aligned_cols=65 Identities=14% Similarity=0.138 Sum_probs=46.5
Q ss_pred CCCeEEEEEecCCCChhHHHHHHHHHHhHHHHHHcCCEEEEEeCCCHHHHHHHHHHcCCceeEEec
Q 027245 95 KDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKGEVYAD 160 (226)
Q Consensus 95 ~~~~vVVvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs~~~~~~i~~f~~~~~~pfpll~D 160 (226)
+++++++++|++.||+.|+...+.|.+..+++.+ ++.++.|..+...++.+-..-.++|.-++.+
T Consensus 11 ~~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~-~v~~~~id~d~~~~l~~~~~v~~vPt~~i~~ 75 (97)
T cd02949 11 ESDRLILVLYTSPTCGPCRTLKPILNKVIDEFDG-AVHFVEIDIDEDQEIAEAAGIMGTPTVQFFK 75 (97)
T ss_pred hCCCeEEEEEECCCChhHHHHHHHHHHHHHHhCC-ceEEEEEECCCCHHHHHHCCCeeccEEEEEE
Confidence 4567899999999999999999999998888753 5888888887654332222223455555554
No 82
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=97.87 E-value=1.2e-05 Score=59.59 Aligned_cols=73 Identities=12% Similarity=0.065 Sum_probs=48.9
Q ss_pred CCccCCCeEEEEEecCCCChhHHHHHHHHHHhHHHHHH-cCCEEEEEeCCCHHHHHHHHHHcCC-cee-EEecCChH
Q 027245 91 SDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDA-SGVALVLIGPGSVEQARTFSEQTKF-KGE-VYADPNHS 164 (226)
Q Consensus 91 sdl~~~~~vVVvF~R~~~Cp~C~~el~~L~~~~~~l~~-~Gv~lVaIs~~~~~~i~~f~~~~~~-pfp-ll~Dp~~~ 164 (226)
.++.+.++.+++.|++.||+.|+...+.+.+..+++++ ..+.++.|.++.. ....+++++++ .+| ++.+++++
T Consensus 11 ~~~~~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-~~~~~~~~~~i~~~Pt~~~~~~g~ 86 (104)
T cd02997 11 RKFLKKEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKP-EHDALKEEYNVKGFPTFKYFENGK 86 (104)
T ss_pred HHHHhhCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCC-ccHHHHHhCCCccccEEEEEeCCC
Confidence 33444556889999999999999999999999888875 3456666777652 12344555555 344 44444443
No 83
>COG4312 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.86 E-value=3.8e-05 Score=66.51 Aligned_cols=92 Identities=14% Similarity=0.301 Sum_probs=76.9
Q ss_pred EecCCCCeEeCCCccCCCeEEEEE--e----cCCCChhHHHHHHHHHHhHHHHHHcCCEEEEEeCCCHHHHHHHHHHcCC
Q 027245 80 VYDVNGNAIPISDLWKDRKAVVAF--A----RHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKF 153 (226)
Q Consensus 80 L~D~~G~~v~Lsdl~~~~~vVVvF--~----R~~~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs~~~~~~i~~f~~~~~~ 153 (226)
+.|....+.+|.||++++.-+||. + |...||.|.--+..+......|+..+|.+++|+..+.+++..|.++-||
T Consensus 56 ~Fe~~~G~~sLadLF~grsqLIvYhfmF~P~~~~~C~gCS~laD~~dGa~~HL~~~dv~lv~VsRAPl~~l~~~k~rmGW 135 (247)
T COG4312 56 VFETENGKKSLADLFGGRSQLIVYHFMFGPGWDHGCPGCSFLADHWDGAVAHLEHHDVTLVAVSRAPLEELVAYKRRMGW 135 (247)
T ss_pred EeecCCcchhHHHHhCCCceEEEEEEecCCCccCCCCchhhHHhhhhhhhhhHhhcCceEEEEecCcHHHHHHHHHhcCC
Confidence 344444488999999987655543 3 3458999999999998888999999999999999999999999999999
Q ss_pred ceeEEecCChHHHHHcCC
Q 027245 154 KGEVYADPNHSSYEALSF 171 (226)
Q Consensus 154 pfpll~Dp~~~ly~alGv 171 (226)
.||.+++.+..+-.-|.+
T Consensus 136 ~f~w~Ss~~s~Fn~Df~v 153 (247)
T COG4312 136 QFPWVSSTDSDFNRDFQV 153 (247)
T ss_pred cceeEeccCccccccccc
Confidence 999999998877666655
No 84
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=97.86 E-value=6.9e-05 Score=56.09 Aligned_cols=62 Identities=11% Similarity=0.055 Sum_probs=45.4
Q ss_pred CeEEEEEecCCCChhHHHHHHHHHHhHHHHHHcCCEEEEEeCCCHHHHHHHHHHcC---CceeEEecCC
Q 027245 97 RKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTK---FKGEVYADPN 162 (226)
Q Consensus 97 ~~vVVvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs~~~~~~i~~f~~~~~---~pfpll~Dp~ 162 (226)
++.+|+.|++.||+.|+...+.+.+..+++. ..+.+..|.++.... .+++++ +|--++.+..
T Consensus 19 ~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~-~~~~~~~vd~~~~~~---~~~~~~i~~~Pt~~~~~~g 83 (104)
T cd03004 19 KEPWLVDFYAPWCGPCQALLPELRKAARALK-GKVKVGSVDCQKYES---LCQQANIRAYPTIRLYPGN 83 (104)
T ss_pred CCeEEEEEECCCCHHHHHHHHHHHHHHHHhc-CCcEEEEEECCchHH---HHHHcCCCcccEEEEEcCC
Confidence 4588889999999999999999999988874 458888999887543 344444 3433444443
No 85
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=97.83 E-value=4.1e-05 Score=56.59 Aligned_cols=64 Identities=13% Similarity=0.161 Sum_probs=45.3
Q ss_pred CeEEEEEecCCCChhHHHHHHHHHHhHHHHH-HcCCEEEEEeCCCHHHHHHHHHHc---CCceeEEecCC
Q 027245 97 RKAVVAFARHFGCVLCRKRADYLAAKKDVMD-ASGVALVLIGPGSVEQARTFSEQT---KFKGEVYADPN 162 (226)
Q Consensus 97 ~~vVVvF~R~~~Cp~C~~el~~L~~~~~~l~-~~Gv~lVaIs~~~~~~i~~f~~~~---~~pfpll~Dp~ 162 (226)
++.+|++|++.||+.|++..+.+.+..++++ ..++.++.|.++.. ...+++++ ++|.-++.++.
T Consensus 18 ~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~--~~~~~~~~~i~~~P~~~~~~~~ 85 (105)
T cd02998 18 KKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEA--NKDLAKKYGVSGFPTLKFFPKG 85 (105)
T ss_pred CCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCc--chhhHHhCCCCCcCEEEEEeCC
Confidence 4578888999999999999999999988886 34577888887762 22333443 34444555554
No 86
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=97.83 E-value=0.00011 Score=57.28 Aligned_cols=49 Identities=8% Similarity=-0.066 Sum_probs=40.8
Q ss_pred CCCeEEEEEecCCCChhHHHHHHHHHHhHHHHHHcCCEEEEEeCCCHHHH
Q 027245 95 KDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQA 144 (226)
Q Consensus 95 ~~~~vVVvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs~~~~~~i 144 (226)
++++.+|+.|++.||++|+...+.+.+..+++++. +.++.|.++....+
T Consensus 27 ~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~-v~~~~Vd~d~~~~l 75 (113)
T cd03006 27 TDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQ-VLFVAINCWWPQGK 75 (113)
T ss_pred cCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCC-eEEEEEECCCChHH
Confidence 45678899999999999999999999999988643 88899998865433
No 87
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=97.81 E-value=4.9e-05 Score=56.60 Aligned_cols=51 Identities=12% Similarity=0.023 Sum_probs=40.4
Q ss_pred EEEEecCCCChhHHHHHHHHHHhHHHHHHcCCEEEEEeCCCHHHHHHHHHHcCC
Q 027245 100 VVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKF 153 (226)
Q Consensus 100 VVvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs~~~~~~i~~f~~~~~~ 153 (226)
+|+.|++.||++|+...+.+.+..++++..++.+..|.++.... .++++++
T Consensus 19 ~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~---~~~~~~i 69 (101)
T cd02994 19 WMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQEPG---LSGRFFV 69 (101)
T ss_pred EEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCCHh---HHHHcCC
Confidence 57999999999999999999999887766678888888876433 3444454
No 88
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=97.81 E-value=4.9e-05 Score=57.57 Aligned_cols=50 Identities=8% Similarity=0.012 Sum_probs=38.9
Q ss_pred CccCCCeEEEEEecCCCChhHHHHHHHHHHhHHHHHHc-----CCEEEEEeCCCH
Q 027245 92 DLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDAS-----GVALVLIGPGSV 141 (226)
Q Consensus 92 dl~~~~~vVVvF~R~~~Cp~C~~el~~L~~~~~~l~~~-----Gv~lVaIs~~~~ 141 (226)
+..+..+.++|+|++.||+.|+...+.+.+..+++++. .+.+..|.++..
T Consensus 13 ~~i~~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~ 67 (108)
T cd02996 13 DILQSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKE 67 (108)
T ss_pred HHHhcCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCC
Confidence 34455678899999999999999999999988877532 366677777754
No 89
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=97.80 E-value=8.2e-05 Score=61.11 Aligned_cols=47 Identities=13% Similarity=-0.025 Sum_probs=41.4
Q ss_pred CeEEEEEecCCCChhHHHHHHHHHHhHHHHHHcCCEEEEEeCCCHHH
Q 027245 97 RKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQ 143 (226)
Q Consensus 97 ~~vVVvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs~~~~~~ 143 (226)
++.+|+.|++.||++|+...+.+.+..+++.+.++.++.|.++....
T Consensus 47 ~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~~ 93 (152)
T cd02962 47 RVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFPN 93 (152)
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCHH
Confidence 46889999999999999999999999998877789999999987543
No 90
>PRK09381 trxA thioredoxin; Provisional
Probab=97.80 E-value=3.9e-05 Score=58.03 Aligned_cols=48 Identities=13% Similarity=0.072 Sum_probs=40.0
Q ss_pred CCeEEEEEecCCCChhHHHHHHHHHHhHHHHHHcCCEEEEEeCCCHHHH
Q 027245 96 DRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQA 144 (226)
Q Consensus 96 ~~~vVVvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs~~~~~~i 144 (226)
.++.+|+.|++.|||.|+...+.|++..+++.. ++.++.|.++....+
T Consensus 20 ~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~-~~~~~~vd~~~~~~~ 67 (109)
T PRK09381 20 ADGAILVDFWAEWCGPCKMIAPILDEIADEYQG-KLTVAKLNIDQNPGT 67 (109)
T ss_pred CCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCC-CcEEEEEECCCChhH
Confidence 345788899999999999999999999998864 588999998875443
No 91
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=97.80 E-value=3.4e-05 Score=56.75 Aligned_cols=69 Identities=9% Similarity=0.066 Sum_probs=47.7
Q ss_pred ccCCCeEEEEEecCCCChhHHHHHHHHHHhHHHHHHcC-CEEEEEeCCCHHHHHHHHHHcCC---ceeEEecCChH
Q 027245 93 LWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASG-VALVLIGPGSVEQARTFSEQTKF---KGEVYADPNHS 164 (226)
Q Consensus 93 l~~~~~vVVvF~R~~~Cp~C~~el~~L~~~~~~l~~~G-v~lVaIs~~~~~~i~~f~~~~~~---pfpll~Dp~~~ 164 (226)
....++++++.|+..||+.|+...+.+.+..+.++..+ +.++.|.++... ..++++++ |--++.+++..
T Consensus 9 ~~~~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~~~i~~~P~~~~~~~~~~ 81 (102)
T TIGR01126 9 IVLSNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEK---DLASRFGVSGFPTIKFFPKGKK 81 (102)
T ss_pred HhccCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccchH---HHHHhCCCCcCCEEEEecCCCc
Confidence 33456788999999999999999999999888886553 777777765542 33444443 33345665554
No 92
>KOG1651 consensus Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=97.80 E-value=5.5e-05 Score=62.91 Aligned_cols=98 Identities=15% Similarity=0.182 Sum_probs=77.6
Q ss_pred cCcCCCcEEecCCCCeEeCCCccCCCeEEEEEecCCCChhHHHHHHHHHHhHHHHHHcCCEEEEEeCC--------CHHH
Q 027245 72 KNLLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPG--------SVEQ 143 (226)
Q Consensus 72 g~~apdf~L~D~~G~~v~Lsdl~~~~~vVVvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs~~--------~~~~ 143 (226)
-..+-+|++.|.+|+.++|+.+ .++|||+.--++.|.+-...-.+|.++++++++.|.+|++.-|. +-++
T Consensus 11 ~~siydf~~~d~~G~~v~l~~y--rGkV~LiVNVAS~Cg~T~~~Y~~l~~L~~ky~~~Gl~ILaFPCNQFg~QEp~~n~E 88 (171)
T KOG1651|consen 11 KGSIYDFSAKDLDGEYVSLSQY--RGKVVLIVNVASQCGLTESQYTELNELYEKYKDQGLEILAFPCNQFGNQEPGSNEE 88 (171)
T ss_pred hcceeeeEEecCCCCCccHHHh--CCeEEEEEEcccccccchhcchhHHHHHHHHhhCCeEEEEeccccccCcCCCCcHH
Confidence 3456789999999999999998 45677777779999999977779999999999999999999764 3467
Q ss_pred HHHHH-HHcCCceeEEec------CChHHHHHcCC
Q 027245 144 ARTFS-EQTKFKGEVYAD------PNHSSYEALSF 171 (226)
Q Consensus 144 i~~f~-~~~~~pfpll~D------p~~~ly~alGv 171 (226)
+..|+ .+++..|||+.- ....+|+-|.-
T Consensus 89 i~~f~~~r~~~~f~if~KidVNG~~~~PlykfLK~ 123 (171)
T KOG1651|consen 89 ILNFVKVRYGAEFPIFQKIDVNGDNADPLYKFLKK 123 (171)
T ss_pred HHHHHHhccCCCCccEeEEecCCCCCchHHHHHhh
Confidence 88887 567778888762 34455555433
No 93
>PTZ00051 thioredoxin; Provisional
Probab=97.79 E-value=1.9e-05 Score=58.35 Aligned_cols=47 Identities=11% Similarity=0.147 Sum_probs=37.8
Q ss_pred ccCCCeEEEEEecCCCChhHHHHHHHHHHhHHHHHHcCCEEEEEeCCCH
Q 027245 93 LWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSV 141 (226)
Q Consensus 93 l~~~~~vVVvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs~~~~ 141 (226)
+.+.++.++++|++.||+.|+...+.|.+..+++ .++.++.|..+..
T Consensus 14 ~~~~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~--~~~~~~~vd~~~~ 60 (98)
T PTZ00051 14 TLSQNELVIVDFYAEWCGPCKRIAPFYEECSKEY--TKMVFVKVDVDEL 60 (98)
T ss_pred HHhcCCeEEEEEECCCCHHHHHHhHHHHHHHHHc--CCcEEEEEECcch
Confidence 3445678899999999999999999999888765 3578888887653
No 94
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=97.78 E-value=0.0001 Score=54.39 Aligned_cols=46 Identities=13% Similarity=0.155 Sum_probs=39.4
Q ss_pred CeEEEEEecCCCChhHHHHHHHHHHhHHHHHH-cCCEEEEEeCCCHH
Q 027245 97 RKAVVAFARHFGCVLCRKRADYLAAKKDVMDA-SGVALVLIGPGSVE 142 (226)
Q Consensus 97 ~~vVVvF~R~~~Cp~C~~el~~L~~~~~~l~~-~Gv~lVaIs~~~~~ 142 (226)
++.++++|++.||+.|+...+.+.+..+++++ ..+.+..|.++..+
T Consensus 18 ~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~ 64 (104)
T cd02995 18 DKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAND 64 (104)
T ss_pred CCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcchh
Confidence 46788999999999999999999999988876 46888888887654
No 95
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=97.70 E-value=0.00019 Score=53.07 Aligned_cols=66 Identities=8% Similarity=-0.046 Sum_probs=43.7
Q ss_pred CCeEEEEEecCCCChhHHHHHHHHHHhHHHHHHcCCEEEEEeCCCHHHHHHHHHHcCCceeEEecCC
Q 027245 96 DRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKGEVYADPN 162 (226)
Q Consensus 96 ~~~vVVvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs~~~~~~i~~f~~~~~~pfpll~Dp~ 162 (226)
.++.+++.|++.||+.|+...+.+.+..+++.. .+.++.|.++....+.+-..-.++|.-++.+++
T Consensus 17 ~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~-~~~~~~id~~~~~~~~~~~~i~~~P~~~~~~~~ 82 (103)
T cd03001 17 SDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKG-IVKVGAVDADVHQSLAQQYGVRGFPTIKVFGAG 82 (103)
T ss_pred CCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcC-CceEEEEECcchHHHHHHCCCCccCEEEEECCC
Confidence 345577788899999999999999998887753 578888887765433221122234433455544
No 96
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=97.70 E-value=0.00016 Score=56.86 Aligned_cols=76 Identities=14% Similarity=0.017 Sum_probs=50.6
Q ss_pred CeEEEEEecCCCChhHHHHHHHHHHhHHHHHHcCCEEEEEeCCCHHHHHHHHHHcCCceeEEecCChHHHHHcCCcc
Q 027245 97 RKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKGEVYADPNHSSYEALSFVS 173 (226)
Q Consensus 97 ~~vVVvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs~~~~~~i~~f~~~~~~pfpll~Dp~~~ly~alGv~~ 173 (226)
.+.+|+.|++.||++|+.-.+.|.++.+++.+. +.++-|..|....+.+-..-.++|--++.-....+.+..|...
T Consensus 14 ~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~-v~f~kVDvD~~~~la~~~~V~~iPTf~~fk~G~~v~~~~G~~~ 89 (114)
T cd02954 14 EKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNF-AVIYLVDIDEVPDFNKMYELYDPPTVMFFFRNKHMKIDLGTGN 89 (114)
T ss_pred CCEEEEEEECCCChhHHHHHHHHHHHHHHccCc-eEEEEEECCCCHHHHHHcCCCCCCEEEEEECCEEEEEEcCCCC
Confidence 467899999999999999999999988877432 6788888887654443333334553344433444444445443
No 97
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=97.70 E-value=9.5e-05 Score=53.38 Aligned_cols=69 Identities=13% Similarity=0.056 Sum_probs=49.3
Q ss_pred CccCCCeEEEEEecCCCChhHHHHHHHHHHhHHHHH-HcCCEEEEEeCCCHHHHHHHHHHcCC---ceeEEecCCh
Q 027245 92 DLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMD-ASGVALVLIGPGSVEQARTFSEQTKF---KGEVYADPNH 163 (226)
Q Consensus 92 dl~~~~~vVVvF~R~~~Cp~C~~el~~L~~~~~~l~-~~Gv~lVaIs~~~~~~i~~f~~~~~~---pfpll~Dp~~ 163 (226)
+...+++.+|++|+..||+.|++..+.+.+..+.++ ..++.++.|.++.. ..+++++++ |--++.++++
T Consensus 10 ~~i~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~---~~~~~~~~i~~~Pt~~~~~~~~ 82 (101)
T cd02961 10 ELVKDSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTAN---NDLCSEYGVRGYPTIKLFPNGS 82 (101)
T ss_pred HHHhCCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccch---HHHHHhCCCCCCCEEEEEcCCC
Confidence 334455578888899999999999999999888885 56788888887762 234445554 3335566653
No 98
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=97.64 E-value=0.00028 Score=54.61 Aligned_cols=57 Identities=11% Similarity=-0.015 Sum_probs=41.7
Q ss_pred CeEEEEEecCCCChhHHHHHHHHHHhHHHHHHc-C-CEEEEEeCCCHHHHHHHHHHcCCc
Q 027245 97 RKAVVAFARHFGCVLCRKRADYLAAKKDVMDAS-G-VALVLIGPGSVEQARTFSEQTKFK 154 (226)
Q Consensus 97 ~~vVVvF~R~~~Cp~C~~el~~L~~~~~~l~~~-G-v~lVaIs~~~~~~i~~f~~~~~~p 154 (226)
++.+|+.|++.||++|+...+.+.+..+++++. + +.+..|.++.. ....+++++++.
T Consensus 19 ~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~-~~~~~~~~~~i~ 77 (114)
T cd02992 19 PSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADE-ENVALCRDFGVT 77 (114)
T ss_pred CCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccch-hhHHHHHhCCCC
Confidence 468999999999999999999999998888643 3 66777776542 234455555543
No 99
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=97.64 E-value=6.3e-05 Score=59.29 Aligned_cols=60 Identities=13% Similarity=0.238 Sum_probs=46.3
Q ss_pred CccCCCeEEEEEecCCCChhHHHHHHHHHHhHHHHHHcCCEEEEEeCCCH--------HHHHHHHHHcCCc
Q 027245 92 DLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSV--------EQARTFSEQTKFK 154 (226)
Q Consensus 92 dl~~~~~vVVvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs~~~~--------~~i~~f~~~~~~p 154 (226)
+..+.+..+|++|.+.|||+|+...|.|.+..++ .++.++-|..+.. +.+.+|.+++++.
T Consensus 18 ~~i~~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~---~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~ 85 (122)
T TIGR01295 18 EALDKKETATFFIGRKTCPYCRKFSGTLSGVVAQ---TKAPIYYIDSENNGSFEMSSLNDLTAFRSRFGIP 85 (122)
T ss_pred HHHHcCCcEEEEEECCCChhHHHHhHHHHHHHHh---cCCcEEEEECCCccCcCcccHHHHHHHHHHcCCc
Confidence 3345567889999999999999999999998775 4577888888731 2567788887644
No 100
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=97.64 E-value=8.2e-05 Score=54.68 Aligned_cols=44 Identities=11% Similarity=0.059 Sum_probs=35.8
Q ss_pred CeEEEEEecCCCChhHHHHHHHHHHhHHHHHHcCCEEEEEeCCCH
Q 027245 97 RKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSV 141 (226)
Q Consensus 97 ~~vVVvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs~~~~ 141 (226)
++.++++|++.||+.|+...+.|.+..+++ ..++.++.|..+..
T Consensus 14 ~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~-~~~i~~~~vd~~~~ 57 (97)
T cd02984 14 SKLLVLHFWAPWAEPCKQMNQVFEELAKEA-FPSVLFLSIEAEEL 57 (97)
T ss_pred CCEEEEEEECCCCHHHHHHhHHHHHHHHHh-CCceEEEEEccccC
Confidence 368888889999999999999999888876 45778888776543
No 101
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=97.62 E-value=0.0002 Score=62.81 Aligned_cols=109 Identities=15% Similarity=0.139 Sum_probs=82.9
Q ss_pred CccccCcCCCcEEecCCCCe-EeCCCccCCCeEEEEEecCCCChhHHHHHHHHHHhHHHHHH-cCCEEEEEe--------
Q 027245 68 SEDTKNLLDTVKVYDVNGNA-IPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDA-SGVALVLIG-------- 137 (226)
Q Consensus 68 ~~~~g~~apdf~L~D~~G~~-v~Lsdl~~~~~vVVvF~R~~~Cp~C~~el~~L~~~~~~l~~-~Gv~lVaIs-------- 137 (226)
....|..|||..|.+.+|+. .++.|+.++++.+|++|...-||+=...+.++++..++|.+ .+.-+|-|-
T Consensus 72 ~a~~G~~APns~vv~l~g~~~~~ildf~~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d~adFl~VYI~EAHpsDgW 151 (237)
T PF00837_consen 72 EAKLGGPAPNSPVVTLDGQRSCRILDFAKGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSDVADFLIVYIEEAHPSDGW 151 (237)
T ss_pred ceeCCCCCCCCceEeeCCCcceeHHHhccCCCCeEEEcccccchHHHHHHHHHHHHHHHhhhhhheehhhHhhhCcCCCc
Confidence 35689999999999999999 99999988888899999999999999999999999888875 233222221
Q ss_pred ---C--------CCH----HHHHHHHHHcCCceeEEecC-ChHHHHHcCCccccce
Q 027245 138 ---P--------GSV----EQARTFSEQTKFKGEVYADP-NHSSYEALSFVSGVLV 177 (226)
Q Consensus 138 ---~--------~~~----~~i~~f~~~~~~pfpll~Dp-~~~ly~alGv~~~~~~ 177 (226)
. -+. ..++.+.++ ...+||++|. ++...++||.......
T Consensus 152 ~~~~~~~~i~qh~sledR~~aA~~l~~~-~~~~pi~vD~mdN~~~~~YgA~PeRly 206 (237)
T PF00837_consen 152 AFGNNPYEIPQHRSLEDRLRAAKLLKEE-FPQCPIVVDTMDNNFNKAYGALPERLY 206 (237)
T ss_pred cCCCCceeecCCCCHHHHHHHHHHHHhh-CCCCCEEEEccCCHHHHHhCCCcceEE
Confidence 0 011 234445544 4678999995 8888999998765433
No 102
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=97.61 E-value=0.00036 Score=51.18 Aligned_cols=62 Identities=11% Similarity=0.142 Sum_probs=46.5
Q ss_pred CeEEEEEecCCCChhHHHHHHHHHHhHHHHHHcCCEEEEEeCCCHHHHHHHHHHcC---CceeEEecCC
Q 027245 97 RKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTK---FKGEVYADPN 162 (226)
Q Consensus 97 ~~vVVvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs~~~~~~i~~f~~~~~---~pfpll~Dp~ 162 (226)
.+.+|+.|...||+.|+...+.|.+..+++.+ ++.++-|.++.. +.++++++ +|.-++.+..
T Consensus 17 ~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~-~v~~~~vd~~~~---~~l~~~~~v~~~Pt~~~~~~g 81 (103)
T PF00085_consen 17 DKPVVVYFYAPWCPPCKAFKPILEKLAKEYKD-NVKFAKVDCDEN---KELCKKYGVKSVPTIIFFKNG 81 (103)
T ss_dssp SSEEEEEEESTTSHHHHHHHHHHHHHHHHTTT-TSEEEEEETTTS---HHHHHHTTCSSSSEEEEEETT
T ss_pred CCCEEEEEeCCCCCccccccceeccccccccc-ccccchhhhhcc---chhhhccCCCCCCEEEEEECC
Confidence 46677777889999999999999999999887 999999999865 33444544 4443444443
No 103
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=97.60 E-value=0.00018 Score=50.74 Aligned_cols=45 Identities=22% Similarity=0.147 Sum_probs=37.3
Q ss_pred CCCeEEEEEecCCCChhHHHHHHHHHHhHHHHHHcCCEEEEEeCCCH
Q 027245 95 KDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSV 141 (226)
Q Consensus 95 ~~~~vVVvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs~~~~ 141 (226)
.+.+.++++|+..||+.|++..+.+.+..++ ..++.++.|..+..
T Consensus 8 ~~~~~~ll~~~~~~C~~C~~~~~~~~~~~~~--~~~~~~~~i~~~~~ 52 (93)
T cd02947 8 KSAKPVVVDFWAPWCGPCKAIAPVLEELAEE--YPKVKFVKVDVDEN 52 (93)
T ss_pred hcCCcEEEEEECCCChhHHHhhHHHHHHHHH--CCCceEEEEECCCC
Confidence 3446788888999999999999999888776 57889999998863
No 104
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=97.58 E-value=0.00016 Score=52.82 Aligned_cols=45 Identities=18% Similarity=0.121 Sum_probs=37.2
Q ss_pred CeEEEEEecCCCChhHHHHHHHHHHhHHHHHHcCCEEEEEeCCCHH
Q 027245 97 RKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVE 142 (226)
Q Consensus 97 ~~vVVvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs~~~~~ 142 (226)
++.++++|+..||+.|+...+.|.+..+++. ..+.++.|..+...
T Consensus 14 ~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~-~~~~~~~vd~~~~~ 58 (101)
T TIGR01068 14 DKPVLVDFWAPWCGPCKMIAPILEELAKEYE-GKVKFVKLNVDENP 58 (101)
T ss_pred CCcEEEEEECCCCHHHHHhCHHHHHHHHHhc-CCeEEEEEECCCCH
Confidence 4578888899999999999999998887774 35888888887653
No 105
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=97.53 E-value=0.00031 Score=55.23 Aligned_cols=54 Identities=13% Similarity=0.168 Sum_probs=42.6
Q ss_pred CCeEEEEEecCCCChhHHHHHHHHHHhHHHHHHcCCEEEEEeCCCHHHHHHHHHHcCC
Q 027245 96 DRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKF 153 (226)
Q Consensus 96 ~~~vVVvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs~~~~~~i~~f~~~~~~ 153 (226)
+.++||+.|.+.||++|+.-.+-|.++.+++.+. +.++-|..|.... +++++++
T Consensus 13 ~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~-~~f~kVDVDev~d---va~~y~I 66 (114)
T cd02986 13 AEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKM-ASIYLVDVDKVPV---YTQYFDI 66 (114)
T ss_pred CCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCc-eEEEEEeccccHH---HHHhcCc
Confidence 4578999999999999999999999999888433 8888888886544 4445454
No 106
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=97.48 E-value=0.0003 Score=55.55 Aligned_cols=44 Identities=11% Similarity=0.126 Sum_probs=36.0
Q ss_pred CeEEEEEecC-------CCChhHHHHHHHHHHhHHHHHHcCCEEEEEeCCCH
Q 027245 97 RKAVVAFARH-------FGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSV 141 (226)
Q Consensus 97 ~~vVVvF~R~-------~~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs~~~~ 141 (226)
++.||+.|++ .||++|+...+.|.+..+++. .++.++-|..+..
T Consensus 21 ~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~-~~v~fv~Vdvd~~ 71 (119)
T cd02952 21 GKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAP-EDCVFIYCDVGDR 71 (119)
T ss_pred CCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCC-CCCEEEEEEcCCc
Confidence 3466777778 999999999999999988775 3588999998764
No 107
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=97.40 E-value=0.00094 Score=47.87 Aligned_cols=66 Identities=18% Similarity=0.193 Sum_probs=44.4
Q ss_pred CeEEEEEecCCCChhHHHHHHHHHHhHHHHHHcCCEEEEEeCC--CHHHHHHHHH-HcCCc-eeEEecCCh
Q 027245 97 RKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPG--SVEQARTFSE-QTKFK-GEVYADPNH 163 (226)
Q Consensus 97 ~~vVVvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs~~--~~~~i~~f~~-~~~~p-fpll~Dp~~ 163 (226)
++.+++.|++.|||.|+.+++.|.+..+++.. .+.++.|... ..+....|.. -..+| +.++.|.+.
T Consensus 32 ~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 101 (127)
T COG0526 32 GKPVLVDFWAPWCPPCRAEAPLLEELAEEYGG-DVEVVAVNVDDENPDLAAEFGVAVRSIPTLLLFKDGKE 101 (127)
T ss_pred CceEEEEEEcCcCHHHHhhchhHHHHHHHhcC-CcEEEEEECCCCChHHHHHHhhhhccCCeEEEEeCcch
Confidence 34555555699999999999999999998866 7888888885 3344444432 23333 334445554
No 108
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=97.39 E-value=0.00033 Score=54.22 Aligned_cols=52 Identities=13% Similarity=0.115 Sum_probs=44.9
Q ss_pred CeEEEEEecCCCChhHHHHHHHHHHhHHHHHHcCCEEEEEeCCCHHHHHHHHHHcCC
Q 027245 97 RKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKF 153 (226)
Q Consensus 97 ~~vVVvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs~~~~~~i~~f~~~~~~ 153 (226)
++.+|+.|.++||++|+.-.|.+.++..++.+ +.++-|..|. ...++++.++
T Consensus 21 ~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~--v~Flkvdvde---~~~~~~~~~V 72 (106)
T KOG0907|consen 21 DKLVVVDFYATWCGPCKAIAPKFEKLAEKYPD--VVFLKVDVDE---LEEVAKEFNV 72 (106)
T ss_pred CCeEEEEEECCCCcchhhhhhHHHHHHHHCCC--CEEEEEeccc---CHhHHHhcCc
Confidence 57888888999999999999999999998865 8999999998 6667777665
No 109
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=97.38 E-value=0.00021 Score=53.97 Aligned_cols=82 Identities=13% Similarity=0.185 Sum_probs=45.0
Q ss_pred CCeEEEEEecCCCChhHHHHHHHHHHhHHHHH--HcCCEEEEEeCCCHH-HHHHHHHHcCCceeEEecCChHHHHHcCCc
Q 027245 96 DRKAVVAFARHFGCVLCRKRADYLAAKKDVMD--ASGVALVLIGPGSVE-QARTFSEQTKFKGEVYADPNHSSYEALSFV 172 (226)
Q Consensus 96 ~~~vVVvF~R~~~Cp~C~~el~~L~~~~~~l~--~~Gv~lVaIs~~~~~-~i~~f~~~~~~pfpll~Dp~~~ly~alGv~ 172 (226)
+++.+|++|+..|||+|++..+++.+..+-.+ +.++.++.+..++.. ..+++.+..+.+. +...+..+.+.||+.
T Consensus 4 ~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~v~ 81 (112)
T PF13098_consen 4 NGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKN--VRLSNKELAQRYGVN 81 (112)
T ss_dssp TSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSS--CHHHHHHHHHHTT--
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchh--hhHHHHHHHHHcCCC
Confidence 34566667789999999988777776443222 336889999888764 3334444322211 111223566666665
Q ss_pred cccceee
Q 027245 173 SGVLVTF 179 (226)
Q Consensus 173 ~~~~~t~ 179 (226)
-++...+
T Consensus 82 gtPt~~~ 88 (112)
T PF13098_consen 82 GTPTIVF 88 (112)
T ss_dssp SSSEEEE
T ss_pred ccCEEEE
Confidence 5554443
No 110
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=97.38 E-value=0.00074 Score=55.01 Aligned_cols=101 Identities=12% Similarity=0.105 Sum_probs=59.0
Q ss_pred CCeEEEEEecCCCChhHHHHHHHHHHhHHHHHHcCCEEEEEeCCCHHHHHHHHHHcCCc----ee-EEecCChHHHHHcC
Q 027245 96 DRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFK----GE-VYADPNHSSYEALS 170 (226)
Q Consensus 96 ~~~vVVvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs~~~~~~i~~f~~~~~~p----fp-ll~Dp~~~ly~alG 170 (226)
+.++||+.|++.||++|+.-.|-|.+..+++.+. +.++-|..|.... +++++++. +- ++-+-+..+-+.=|
T Consensus 22 ~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~-~~~~kVDVDe~~d---la~~y~I~~~~t~~~ffk~g~~~vd~~tG 97 (142)
T PLN00410 22 EERLVVIRFGHDWDETCMQMDEVLASVAETIKNF-AVIYLVDITEVPD---FNTMYELYDPCTVMFFFRNKHIMIDLGTG 97 (142)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCc-eEEEEEECCCCHH---HHHHcCccCCCcEEEEEECCeEEEEEecc
Confidence 3467888999999999999999999988877432 7778888887543 44444443 22 33333211111111
Q ss_pred Cccccceee-cchhhHHHHHHHHhhhccccc
Q 027245 171 FVSGVLVTF-TPKAGLKIIQSYMEGYRQDWK 200 (226)
Q Consensus 171 v~~~~~~t~-~p~a~~~~~~~~~~G~r~~w~ 200 (226)
...-.-+.+ .......++..+.+|.+.+..
T Consensus 98 ~~~k~~~~~~~k~~l~~~i~~~~~~a~~g~~ 128 (142)
T PLN00410 98 NNNKINWALKDKQEFIDIVETVYRGARKGRG 128 (142)
T ss_pred cccccccccCCHHHHHHHHHHHHHHHhcCCe
Confidence 111001112 223556667777777665543
No 111
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=97.37 E-value=0.00072 Score=60.02 Aligned_cols=75 Identities=17% Similarity=0.337 Sum_probs=60.5
Q ss_pred CCcEEecCCCCeEeCCCccCCCeEEEEEecCCCCh-hHHHHHHHHHHhHHHHHHc-CCE--EEEEeCCC----HHHHHHH
Q 027245 76 DTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCV-LCRKRADYLAAKKDVMDAS-GVA--LVLIGPGS----VEQARTF 147 (226)
Q Consensus 76 pdf~L~D~~G~~v~Lsdl~~~~~vVVvF~R~~~Cp-~C~~el~~L~~~~~~l~~~-Gv~--lVaIs~~~----~~~i~~f 147 (226)
-.|+|.|.+|+.++=.||. ++.+|+.|-.+.|| .|-+|+..|....+++++. |+. -|.|++|+ ++.+++|
T Consensus 120 GpF~L~d~~Gk~~te~df~--Gkw~LiYFGFThCPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvDPeRD~~~~~~eY 197 (280)
T KOG2792|consen 120 GPFSLVDHDGKRVTEKDFL--GKWSLIYFGFTHCPDICPDELEKMSAVVDEIEAKPGLPPVPLFISVDPERDSVEVVAEY 197 (280)
T ss_pred CceEEEecCCCeecccccc--cceEEEEecccCCCCcChHHHHHHHHHHHHHhccCCCCccceEEEeCcccCCHHHHHHH
Confidence 3699999999999999983 46788888999999 6999999999999998754 332 47788775 5677777
Q ss_pred HHHcC
Q 027245 148 SEQTK 152 (226)
Q Consensus 148 ~~~~~ 152 (226)
++++.
T Consensus 198 ~~eF~ 202 (280)
T KOG2792|consen 198 VSEFH 202 (280)
T ss_pred HHhcC
Confidence 77653
No 112
>PHA02278 thioredoxin-like protein
Probab=97.34 E-value=0.00046 Score=52.94 Aligned_cols=45 Identities=11% Similarity=0.230 Sum_probs=35.6
Q ss_pred CCCeEEEEEecCCCChhHHHHHHHHHHhHHHHHHcCCEEEEEeCCC
Q 027245 95 KDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGS 140 (226)
Q Consensus 95 ~~~~vVVvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs~~~ 140 (226)
..++.+|+.|++.||++|+...|.|.+..+++. ..+.++-|..+.
T Consensus 12 ~~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~-~~~~~~~vdvd~ 56 (103)
T PHA02278 12 RQKKDVIVMITQDNCGKCEILKSVIPMFQESGD-IKKPILTLNLDA 56 (103)
T ss_pred hCCCcEEEEEECCCCHHHHhHHHHHHHHHhhhc-CCceEEEEECCc
Confidence 345788999999999999999999998876642 336678788775
No 113
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=97.20 E-value=0.0014 Score=50.57 Aligned_cols=61 Identities=13% Similarity=0.256 Sum_probs=42.2
Q ss_pred CCeEEEEEecCCCChhHHHHHHHHHHhHHHHHHcCCEEEEEeCCCHHHHHHHHHHcC---CceeEEecC
Q 027245 96 DRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTK---FKGEVYADP 161 (226)
Q Consensus 96 ~~~vVVvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs~~~~~~i~~f~~~~~---~pfpll~Dp 161 (226)
....++++|++.||++|+.-.+.|.+..++. ..+.++.|..+... +.+++++ .|.-++.+.
T Consensus 21 ~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~--~~i~~~~vd~d~~~---~l~~~~~v~~vPt~~i~~~ 84 (113)
T cd02975 21 NPVDLVVFSSKEGCQYCEVTKQLLEELSELS--DKLKLEIYDFDEDK---EKAEKYGVERVPTTIFLQD 84 (113)
T ss_pred CCeEEEEEeCCCCCCChHHHHHHHHHHHHhc--CceEEEEEeCCcCH---HHHHHcCCCcCCEEEEEeC
Confidence 3456888899999999999888888887664 35778888877543 3334444 444455543
No 114
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=97.16 E-value=0.0032 Score=45.55 Aligned_cols=64 Identities=16% Similarity=0.179 Sum_probs=45.2
Q ss_pred CeEEEEEecCCCChhHHHHHHHHHHh--HHHHHHcCCEEEEEeCCCHHHHHHHHHHcCCceeEEecC
Q 027245 97 RKAVVAFARHFGCVLCRKRADYLAAK--KDVMDASGVALVLIGPGSVEQARTFSEQTKFKGEVYADP 161 (226)
Q Consensus 97 ~~vVVvF~R~~~Cp~C~~el~~L~~~--~~~l~~~Gv~lVaIs~~~~~~i~~f~~~~~~pfpll~Dp 161 (226)
++.|+|+|.+.||+.|+..-..+-.. ..++-+.++..+-|..++.+....+.. .++|.-++.||
T Consensus 17 ~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~~~~~~~~~~~-~~~P~~~~ldp 82 (82)
T PF13899_consen 17 GKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNKNFVLVKVDVDDEDPNAQFDR-QGYPTFFFLDP 82 (82)
T ss_dssp TSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEETTTHHHHHHHHH-CSSSEEEEEET
T ss_pred CCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcCCCChhHHhCC-ccCCEEEEeCC
Confidence 45667777899999999887777443 233234788999998888765444333 67888888886
No 115
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=97.14 E-value=0.00071 Score=62.77 Aligned_cols=60 Identities=15% Similarity=0.199 Sum_probs=46.6
Q ss_pred CccCCCeEEEEEecCCCChhHHHHHHHHHHhHHHHHHcC--CEEEEEeCCCHHHHHHHHHHcCCc
Q 027245 92 DLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASG--VALVLIGPGSVEQARTFSEQTKFK 154 (226)
Q Consensus 92 dl~~~~~vVVvF~R~~~Cp~C~~el~~L~~~~~~l~~~G--v~lVaIs~~~~~~i~~f~~~~~~p 154 (226)
++.+.++.++++|++.||+.|+...+.+.+..+.+++.+ +.++.|.++... +.++++++.
T Consensus 13 ~~i~~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~---~l~~~~~i~ 74 (462)
T TIGR01130 13 DFIKSHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEEK---DLAQKYGVS 74 (462)
T ss_pred HHHhcCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCcH---HHHHhCCCc
Confidence 334556788999999999999999999999988888766 888888887653 344555543
No 116
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=97.14 E-value=0.0015 Score=41.68 Aligned_cols=45 Identities=13% Similarity=0.120 Sum_probs=37.3
Q ss_pred EEEecCCCChhHHHHHHHHHHhHHHHHHcCCEEEEEeCCCHHHHHHH
Q 027245 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTF 147 (226)
Q Consensus 101 VvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs~~~~~~i~~f 147 (226)
|++|+..||+.|.+..+.+.+. +..+.++.++.|..+.......+
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 45 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAEL--ALLNKGVKFEAVDVDEDPALEKE 45 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHH--HhhCCCcEEEEEEcCCChHHhhH
Confidence 4678899999999999999988 55667999999999987655544
No 117
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=97.08 E-value=0.0015 Score=56.86 Aligned_cols=59 Identities=12% Similarity=0.063 Sum_probs=41.6
Q ss_pred eEEEEEecCCCChhHHHHHHHHHHhHHHHHHcCCEEEEEeCCCHHHHHHHHHHcCC---ceeEEec
Q 027245 98 KAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKF---KGEVYAD 160 (226)
Q Consensus 98 ~vVVvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs~~~~~~i~~f~~~~~~---pfpll~D 160 (226)
..+++.|++.||++|+...+.+.+..++++. .+.+..|.++... ..++++++ |--++.+
T Consensus 53 ~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~-~v~~~~VD~~~~~---~l~~~~~I~~~PTl~~f~ 114 (224)
T PTZ00443 53 GPWFVKFYAPWCSHCRKMAPAWERLAKALKG-QVNVADLDATRAL---NLAKRFAIKGYPTLLLFD 114 (224)
T ss_pred CCEEEEEECCCChHHHHHHHHHHHHHHHcCC-CeEEEEecCcccH---HHHHHcCCCcCCEEEEEE
Confidence 4678888999999999999999999888863 3666667665543 34555554 4334444
No 118
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=97.02 E-value=0.0022 Score=61.49 Aligned_cols=46 Identities=13% Similarity=0.176 Sum_probs=40.9
Q ss_pred CCeEEEEEecCCCChhHHHHHHHHHHhHHHHHHcCCEEEEEeCCCH
Q 027245 96 DRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSV 141 (226)
Q Consensus 96 ~~~vVVvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs~~~~ 141 (226)
.++++||.|++.||++|+...+.+.+..++++..++.++.|.++..
T Consensus 370 ~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~ 415 (463)
T TIGR00424 370 RKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGD 415 (463)
T ss_pred CCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCC
Confidence 4568999999999999999999999999999877899999988864
No 119
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=96.96 E-value=0.0018 Score=50.12 Aligned_cols=68 Identities=7% Similarity=-0.008 Sum_probs=46.3
Q ss_pred CCeEEEEEecCCCChhHHHHHHHHHHhHHHHHHcCCEEEEEeCCCHHHHHHHHHHcCCceeEEecCChHH
Q 027245 96 DRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKGEVYADPNHSS 165 (226)
Q Consensus 96 ~~~vVVvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs~~~~~~i~~f~~~~~~pfpll~Dp~~~l 165 (226)
....||+.|++.||+.|+...+.|.++.+++ .++.++-|..+....+.+-..-..+|--++......+
T Consensus 21 ~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~--~~i~f~~Vd~~~~~~l~~~~~v~~vPt~l~fk~G~~v 88 (113)
T cd02989 21 SSERVVCHFYHPEFFRCKIMDKHLEILAKKH--LETKFIKVNAEKAPFLVEKLNIKVLPTVILFKNGKTV 88 (113)
T ss_pred CCCcEEEEEECCCCccHHHHHHHHHHHHHHc--CCCEEEEEEcccCHHHHHHCCCccCCEEEEEECCEEE
Confidence 3467888889999999999999999988766 4588888888775433322233345544554444333
No 120
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=96.93 E-value=0.0032 Score=48.21 Aligned_cols=50 Identities=14% Similarity=0.079 Sum_probs=39.2
Q ss_pred eEEEEEecCCCChhHHHHHHHHHHhHHHHHHcCCEEEEEeCCCHHHHHHHHHHcCC
Q 027245 98 KAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKF 153 (226)
Q Consensus 98 ~vVVvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs~~~~~~i~~f~~~~~~ 153 (226)
+.+|+.|++.||+.|+...+.|.++.+++. ++.++-|..+.. ..++++++
T Consensus 25 ~~vvv~F~a~~c~~C~~l~~~l~~la~~~~--~v~f~~vd~~~~----~l~~~~~i 74 (113)
T cd02957 25 TRVVVHFYEPGFPRCKILDSHLEELAAKYP--ETKFVKINAEKA----FLVNYLDI 74 (113)
T ss_pred CEEEEEEeCCCCCcHHHHHHHHHHHHHHCC--CcEEEEEEchhh----HHHHhcCC
Confidence 678889999999999999999999888763 577777777654 44555554
No 121
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=96.88 E-value=0.0029 Score=62.03 Aligned_cols=67 Identities=12% Similarity=0.169 Sum_probs=46.9
Q ss_pred CeEEEEEecCCCChhHHHHHHHH---HHhHHHHHHcCCEEEEEeCCCH-HHHHHHHHHcC---CceeEEecCChHH
Q 027245 97 RKAVVAFARHFGCVLCRKRADYL---AAKKDVMDASGVALVLIGPGSV-EQARTFSEQTK---FKGEVYADPNHSS 165 (226)
Q Consensus 97 ~~vVVvF~R~~~Cp~C~~el~~L---~~~~~~l~~~Gv~lVaIs~~~~-~~i~~f~~~~~---~pfpll~Dp~~~l 165 (226)
++.|++.|++.||+.|++..+.. .+..++++ ++.++-|..++. ++.++++++++ +|.-++.|++++.
T Consensus 474 gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~--~~~~v~vDvt~~~~~~~~l~~~~~v~g~Pt~~~~~~~G~~ 547 (571)
T PRK00293 474 GKPVMLDLYADWCVACKEFEKYTFSDPQVQQALA--DTVLLQADVTANNAEDVALLKHYNVLGLPTILFFDAQGQE 547 (571)
T ss_pred CCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhc--CCEEEEEECCCCChhhHHHHHHcCCCCCCEEEEECCCCCC
Confidence 56788899999999999866553 33455553 577888887643 34566666666 4666888988764
No 122
>PTZ00102 disulphide isomerase; Provisional
Probab=96.88 E-value=0.0017 Score=61.07 Aligned_cols=83 Identities=16% Similarity=0.192 Sum_probs=52.8
Q ss_pred EecCCCCeEeCCCccCCCeEEEEEecCCCChhHHHHHHHHHHhHHHHHHc-CCEEEEEeCCCHHHH-HHHHHHcCCceeE
Q 027245 80 VYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDAS-GVALVLIGPGSVEQA-RTFSEQTKFKGEV 157 (226)
Q Consensus 80 L~D~~G~~v~Lsdl~~~~~vVVvF~R~~~Cp~C~~el~~L~~~~~~l~~~-Gv~lVaIs~~~~~~i-~~f~~~~~~pfpl 157 (226)
+....|+.+.-. +.+.++.++++|++.||+.|+...+.+.+..+++++. .+.+..|.++..+.. +.|. -.++|--+
T Consensus 359 v~~l~~~~f~~~-v~~~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~~~~~~~~~~-v~~~Pt~~ 436 (477)
T PTZ00102 359 VKVVVGNTFEEI-VFKSDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTANETPLEEFS-WSAFPTIL 436 (477)
T ss_pred eEEecccchHHH-HhcCCCCEEEEEECCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCCCccchhcCC-CcccCeEE
Confidence 444445554321 1234577888999999999999999999998887654 355666776654332 2232 23556556
Q ss_pred EecCChH
Q 027245 158 YADPNHS 164 (226)
Q Consensus 158 l~Dp~~~ 164 (226)
+.+.+..
T Consensus 437 ~~~~~~~ 443 (477)
T PTZ00102 437 FVKAGER 443 (477)
T ss_pred EEECCCc
Confidence 6666554
No 123
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=96.86 E-value=0.0033 Score=44.54 Aligned_cols=42 Identities=12% Similarity=0.141 Sum_probs=33.8
Q ss_pred EEEEEecCCCChhHHHHHHHHHHhHHHHHHcCCEEEEEeCCCH
Q 027245 99 AVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSV 141 (226)
Q Consensus 99 vVVvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs~~~~ 141 (226)
|.|..|+..||+.|+...+.|.+..+++. ..+.++-|..+..
T Consensus 1 ~~v~~f~~~~C~~C~~~~~~l~~l~~~~~-~~~~~~~vd~~~~ 42 (82)
T TIGR00411 1 VKIELFTSPTCPYCPAAKRVVEEVAKEMG-DAVEVEYINVMEN 42 (82)
T ss_pred CEEEEEECCCCcchHHHHHHHHHHHHHhc-CceEEEEEeCccC
Confidence 35678889999999999999999888775 3478888887653
No 124
>PLN02309 5'-adenylylsulfate reductase
Probab=96.85 E-value=0.0027 Score=60.76 Aligned_cols=44 Identities=11% Similarity=0.196 Sum_probs=39.9
Q ss_pred CCeEEEEEecCCCChhHHHHHHHHHHhHHHHHHcCCEEEEEeCC
Q 027245 96 DRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPG 139 (226)
Q Consensus 96 ~~~vVVvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs~~ 139 (226)
.++.+||+|++.||++|+...+.+.++.+++...++.+..|.++
T Consensus 364 ~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d 407 (457)
T PLN02309 364 RKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRAD 407 (457)
T ss_pred CCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECC
Confidence 45788999999999999999999999999888778999999998
No 125
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=96.81 E-value=0.0052 Score=48.72 Aligned_cols=72 Identities=8% Similarity=0.185 Sum_probs=45.5
Q ss_pred CCCeEEEEEecCCCChhHHHHHHHH-HH--hHHHHHHcCCEEEEEeCCCH-HHHHHHHH-------HcCCceeEEecCCh
Q 027245 95 KDRKAVVAFARHFGCVLCRKRADYL-AA--KKDVMDASGVALVLIGPGSV-EQARTFSE-------QTKFKGEVYADPNH 163 (226)
Q Consensus 95 ~~~~vVVvF~R~~~Cp~C~~el~~L-~~--~~~~l~~~Gv~lVaIs~~~~-~~i~~f~~-------~~~~pfpll~Dp~~ 163 (226)
++++.|+++|.+.||+.|+..-... .+ ..+.+ +.+..+|-|..+.. +..+.+.+ ..|+|.-|+.|+++
T Consensus 13 ~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l-~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~Pt~vfl~~~G 91 (124)
T cd02955 13 REDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAIL-NENFVPIKVDREERPDVDKIYMNAAQAMTGQGGWPLNVFLTPDL 91 (124)
T ss_pred HcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHH-hCCEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCCCEEEEECCCC
Confidence 3456788889999999999755432 22 23333 34677777776543 22222322 34789999999997
Q ss_pred HHHH
Q 027245 164 SSYE 167 (226)
Q Consensus 164 ~ly~ 167 (226)
+...
T Consensus 92 ~~~~ 95 (124)
T cd02955 92 KPFF 95 (124)
T ss_pred CEEe
Confidence 7543
No 126
>PTZ00102 disulphide isomerase; Provisional
Probab=96.81 E-value=0.0021 Score=60.39 Aligned_cols=60 Identities=8% Similarity=0.135 Sum_probs=44.1
Q ss_pred CCccCCCeEEEEEecCCCChhHHHHHHHHHHhHHHHHHcC--CEEEEEeCCCHHHHHHHHHHcCC
Q 027245 91 SDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASG--VALVLIGPGSVEQARTFSEQTKF 153 (226)
Q Consensus 91 sdl~~~~~vVVvF~R~~~Cp~C~~el~~L~~~~~~l~~~G--v~lVaIs~~~~~~i~~f~~~~~~ 153 (226)
.++.++++.++++|++.||+.|++..+.+.+..+++++.+ +.+.-|.++... ..++++++
T Consensus 43 ~~~i~~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~~---~l~~~~~i 104 (477)
T PTZ00102 43 DKFITENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEM---ELAQEFGV 104 (477)
T ss_pred HHHHhcCCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCCH---HHHHhcCC
Confidence 3344456789999999999999999999999888887654 677777776543 34445554
No 127
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=96.79 E-value=0.0032 Score=49.72 Aligned_cols=49 Identities=6% Similarity=0.120 Sum_probs=36.2
Q ss_pred CCeEEEEEecCCCChh--HH--HHHHHHHHh-HHHHHHcCCEEEEEeCCCHHHH
Q 027245 96 DRKAVVAFARHFGCVL--CR--KRADYLAAK-KDVMDASGVALVLIGPGSVEQA 144 (226)
Q Consensus 96 ~~~vVVvF~R~~~Cp~--C~--~el~~L~~~-~~~l~~~Gv~lVaIs~~~~~~i 144 (226)
...+||+||++.||++ |+ .-.|.|.+. .+.+++.++.++-|.++....+
T Consensus 26 ~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~~~L 79 (120)
T cd03065 26 YDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKDAKV 79 (120)
T ss_pred CCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCCHHH
Confidence 3568999999999987 99 444555554 4445677899999999865433
No 128
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=96.68 E-value=0.0032 Score=49.26 Aligned_cols=49 Identities=8% Similarity=-0.045 Sum_probs=36.0
Q ss_pred CCeEEEEEecCCC--ChhHHHHHHHHHHhHHHHHHcCCEEEEEeCCCHHHHH
Q 027245 96 DRKAVVAFARHFG--CVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQAR 145 (226)
Q Consensus 96 ~~~vVVvF~R~~~--Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs~~~~~~i~ 145 (226)
.+..+|++|++.| ||.|+.-.+.|.+..+++.+. +.++-|..++..++.
T Consensus 26 ~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~-v~f~kVdid~~~~la 76 (111)
T cd02965 26 AGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGR-FRAAVVGRADEQALA 76 (111)
T ss_pred CCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCc-EEEEEEECCCCHHHH
Confidence 3346677777886 999999999999998887533 567777777654443
No 129
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.45 E-value=0.0043 Score=50.99 Aligned_cols=54 Identities=13% Similarity=0.100 Sum_probs=42.2
Q ss_pred CeEEEEEecCCCChhHHHHHHHHHHhHHHHHHcCCEEEEEeCCCHHHHHHHHHHcCCc
Q 027245 97 RKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFK 154 (226)
Q Consensus 97 ~~vVVvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs~~~~~~i~~f~~~~~~p 154 (226)
...|||-|++.||.+|+.-.|.|++...++ +.-+++.-|..|+.-+ +++++++.
T Consensus 61 ~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~-~g~~k~~kvdtD~~~e---la~~Y~I~ 114 (150)
T KOG0910|consen 61 DVPVLVDFHAEWCGPCKMLGPILEELVSEY-AGKFKLYKVDTDEHPE---LAEDYEIS 114 (150)
T ss_pred CCCEEEEEecCcCccHhHhhHHHHHHHHhh-cCeEEEEEEccccccc---hHhhccee
Confidence 356788889999999999999999999888 4568888888887532 34455654
No 130
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=96.30 E-value=0.012 Score=43.39 Aligned_cols=53 Identities=8% Similarity=0.054 Sum_probs=39.2
Q ss_pred eEEEEEecCCCChhHHHHHHHHHHhHHHHHHcCCEEEEEeCCCHHHHHHHHHHcCCc
Q 027245 98 KAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFK 154 (226)
Q Consensus 98 ~vVVvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs~~~~~~i~~f~~~~~~p 154 (226)
..++++|...||+.|.+..+.|.+..++++. .+.++.|..+... .+++.+++.
T Consensus 13 ~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~-~v~f~~vd~~~~~---~~~~~~~i~ 65 (103)
T cd02982 13 KPLLVLFYNKDDSESEELRERFKEVAKKFKG-KLLFVVVDADDFG---RHLEYFGLK 65 (103)
T ss_pred CCEEEEEEcCChhhHHHHHHHHHHHHHHhCC-eEEEEEEchHhhH---HHHHHcCCC
Confidence 4567777899999999999999999999873 3677777766533 345555553
No 131
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=96.27 E-value=0.024 Score=38.59 Aligned_cols=54 Identities=19% Similarity=0.183 Sum_probs=38.9
Q ss_pred EEEecCCCChhHHHHHHHHHHhHHHHHHcCCEEEEEeCCCH-HHHHHHHHHcCCc-eeEEecC
Q 027245 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSV-EQARTFSEQTKFK-GEVYADP 161 (226)
Q Consensus 101 VvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs~~~~-~~i~~f~~~~~~p-fpll~Dp 161 (226)
|.+|.+.|||+|++..+.|. +.|+.+..|..++. +..+++.+.++.. .|.+.+.
T Consensus 2 i~lf~~~~C~~C~~~~~~l~-------~~~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~~ 57 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLT-------SKGIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVIG 57 (74)
T ss_pred EEEEcCCCChhHHHHHHHHH-------HCCCeEEEEeccCCHHHHHHHHHHhCCCcccEEEEC
Confidence 56889999999998655553 46788888887653 4556777777754 6766653
No 132
>PF13728 TraF: F plasmid transfer operon protein
Probab=96.20 E-value=0.013 Score=50.55 Aligned_cols=75 Identities=15% Similarity=0.252 Sum_probs=49.7
Q ss_pred CCCccCCCeEEEEEecCCCChhHHHHHHHHHHhHHHHHHcCCEEEEEeCCCHHHHHHHHHHcCCceeEEecCChHHHHHc
Q 027245 90 ISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKGEVYADPNHSSYEAL 169 (226)
Q Consensus 90 Lsdl~~~~~vVVvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs~~~~~~i~~f~~~~~~pfpll~Dp~~~ly~al 169 (226)
+.++ .++..+++||++ .|++|+...+-|+.+.+++ |+.|++|+.|..- +. .+|-.+. +..+.+.|
T Consensus 115 l~~l-a~~~gL~~F~~~-~C~~C~~~~pil~~~~~~y---g~~v~~vs~DG~~-~~------~fp~~~~---~~g~~~~l 179 (215)
T PF13728_consen 115 LKQL-AQKYGLFFFYRS-DCPYCQQQAPILQQFADKY---GFSVIPVSLDGRP-IP------SFPNPRP---DPGQAKRL 179 (215)
T ss_pred HHHH-hhCeEEEEEEcC-CCchhHHHHHHHHHHHHHh---CCEEEEEecCCCC-Cc------CCCCCCC---CHHHHHHc
Confidence 4443 244566666666 8999999999999988854 9999999998631 00 1221111 56677778
Q ss_pred CCccccceee
Q 027245 170 SFVSGVLVTF 179 (226)
Q Consensus 170 Gv~~~~~~t~ 179 (226)
|+...+...+
T Consensus 180 ~v~~~Pal~L 189 (215)
T PF13728_consen 180 GVKVTPALFL 189 (215)
T ss_pred CCCcCCEEEE
Confidence 8876655433
No 133
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.17 E-value=0.015 Score=52.77 Aligned_cols=49 Identities=10% Similarity=0.024 Sum_probs=39.4
Q ss_pred CeEEEEEecCCCChhHHHHHHHHHHhHHHHHHcCCEEEEEeCCCHHHHHH
Q 027245 97 RKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQART 146 (226)
Q Consensus 97 ~~vVVvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs~~~~~~i~~ 146 (226)
...|||.||+.||++|+.-.+.|.+...+.+ -.+.++-|.+|....+..
T Consensus 43 ~~PVlV~fWap~~~~c~qL~p~Lekla~~~~-G~f~LakvN~D~~p~vAa 91 (304)
T COG3118 43 EVPVLVDFWAPWCGPCKQLTPTLEKLAAEYK-GKFKLAKVNCDAEPMVAA 91 (304)
T ss_pred CCCeEEEecCCCCchHHHHHHHHHHHHHHhC-CceEEEEecCCcchhHHH
Confidence 3468888999999999999999999888764 457788888887655544
No 134
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=96.09 E-value=0.021 Score=47.76 Aligned_cols=42 Identities=17% Similarity=0.108 Sum_probs=35.2
Q ss_pred eEEEEEecCCCChhHHHHHHHHHHhHHHHHHcCCEEEEEeCCCH
Q 027245 98 KAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSV 141 (226)
Q Consensus 98 ~vVVvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs~~~~ 141 (226)
..|||.|++.||++|+.-.+.|.++..++. .+.++-|..+..
T Consensus 84 ~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~--~vkF~kVd~d~~ 125 (175)
T cd02987 84 TTVVVHIYEPGIPGCAALNSSLLCLAAEYP--AVKFCKIRASAT 125 (175)
T ss_pred cEEEEEEECCCCchHHHHHHHHHHHHHHCC--CeEEEEEeccch
Confidence 378889999999999988888888887763 588888888864
No 135
>PF07976 Phe_hydrox_dim: Phenol hydroxylase, C-terminal dimerisation domain ; InterPro: IPR012941 Phenol hydroxylase is a homodimer which hydroxylates phenol to catechol, or similar products. The enzyme is comprised of three domains. The first two domains form the active site. The third domain, this domain, is involved in forming the dimerisation interface. The domain adopts a thioredoxin-like fold [].; PDB: 2DKH_A 2DKI_A 1PN0_A 1FOH_D.
Probab=96.09 E-value=0.005 Score=51.22 Aligned_cols=110 Identities=21% Similarity=0.231 Sum_probs=69.4
Q ss_pred CCCCccccCcCCCcEEec-CCCCeEeCCCccC--CCeEEEEEecCCCChhHHHHHHHHHHhHH-------HHHH------
Q 027245 65 PSVSEDTKNLLDTVKVYD-VNGNAIPISDLWK--DRKAVVAFARHFGCVLCRKRADYLAAKKD-------VMDA------ 128 (226)
Q Consensus 65 ~~~~~~~g~~apdf~L~D-~~G~~v~Lsdl~~--~~~vVVvF~R~~~Cp~C~~el~~L~~~~~-------~l~~------ 128 (226)
......+|..+|++.|.. .||+++.|.+.+. ++.-|+||--..-.+.+.+.+..|.+..+ .|..
T Consensus 26 ~a~~l~~G~Rlp~~~v~r~aD~~p~~l~~~l~sdGrfri~vFagd~~~~~~~~~l~~l~~~L~~~~s~~~r~~~~~~~~~ 105 (169)
T PF07976_consen 26 LAGGLRPGRRLPSAKVVRHADGNPVHLQDDLPSDGRFRILVFAGDISLPEQLSRLSALADYLESPSSFLSRFTPKDRDPD 105 (169)
T ss_dssp GBTTS-TTCB----EEEETTTTEEEEGGGG--SSS-EEEEEEEETTTTCHCCCHHHHHHHHHHSTTSHHHHHSBTTS-TT
T ss_pred cccCcCCccccCCceEEEEcCCCChhHhhhcccCCCEEEEEEeCCCccchhHHHHHHHHHHHHhcchHHHhcCCCCCCCC
Confidence 445678999999999977 6899999998664 46789999888888777666666666443 3332
Q ss_pred cCCEEEEEeCCCH---------HHHHHHHHHcCCce-eEEecC------ChHHHHHcCCccc
Q 027245 129 SGVALVLIGPGSV---------EQARTFSEQTKFKG-EVYADP------NHSSYEALSFVSG 174 (226)
Q Consensus 129 ~Gv~lVaIs~~~~---------~~i~~f~~~~~~pf-pll~Dp------~~~ly~alGv~~~ 174 (226)
.-++++.|.+.+. +..+.|.+++++.+ .||+|. .+.+|+.||+.+.
T Consensus 106 s~~~~~~I~~~~~~~~e~~dlP~~~~p~~~~~~~~~~~vy~Dd~~~~~~~g~~y~~~Gid~~ 167 (169)
T PF07976_consen 106 SVFDVLLIHSSPRDEVELFDLPEIFRPFDGKRGWDYWKVYVDDESYHSGHGDAYEKYGIDRD 167 (169)
T ss_dssp SSEEEEEEESS-CCCS-GGGS-CCCS-EETTTTC--SSEEE-S-SSSSTT--HHHHCTBBTT
T ss_pred CeeEEEEEecCCCCceeHHHCcHhhCcccCCCCccceeEEecCcccccCcccHHHhhCCCcC
Confidence 2388999988752 33455566667654 499995 4899999998754
No 136
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=95.91 E-value=0.013 Score=54.24 Aligned_cols=47 Identities=13% Similarity=0.155 Sum_probs=39.9
Q ss_pred CCeEEEEEecCCCChhHHHHHHHHHHhHHHHHHc--CCEEEEEeCCCHH
Q 027245 96 DRKAVVAFARHFGCVLCRKRADYLAAKKDVMDAS--GVALVLIGPGSVE 142 (226)
Q Consensus 96 ~~~vVVvF~R~~~Cp~C~~el~~L~~~~~~l~~~--Gv~lVaIs~~~~~ 142 (226)
.++.+|++|++.||+.|+...+.+.+..+++... ++.++.|.++..+
T Consensus 363 ~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n~ 411 (462)
T TIGR01130 363 ETKDVLVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATAND 411 (462)
T ss_pred CCCeEEEEEECCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCCc
Confidence 3578899999999999999999999999988763 6888888887643
No 137
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=95.85 E-value=0.021 Score=40.89 Aligned_cols=42 Identities=10% Similarity=0.175 Sum_probs=30.2
Q ss_pred EEecCCCChhHHHHHHHHHHhHHHHHHcCCEEEEEeCCCHHHHHH
Q 027245 102 AFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQART 146 (226)
Q Consensus 102 vF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs~~~~~~i~~ 146 (226)
|.|++.|||.|..-.+.+.+..+++ |..+..+-.++.+++.+
T Consensus 3 i~~~a~~C~~C~~~~~~~~~~~~e~---~~~~~~~~v~~~~~a~~ 44 (76)
T TIGR00412 3 IQIYGTGCANCQMTEKNVKKAVEEL---GIDAEFEKVTDMNEILE 44 (76)
T ss_pred EEEECCCCcCHHHHHHHHHHHHHHc---CCCeEEEEeCCHHHHHH
Confidence 4556799999999999888888765 44455566666655433
No 138
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=95.80 E-value=0.036 Score=38.54 Aligned_cols=52 Identities=15% Similarity=0.093 Sum_probs=31.2
Q ss_pred EEEecCCCChhHHHHHHHHHHhHHHHHHcCCEEEEEeCCCHHHHHHHH-HHc-C-CceeEEe
Q 027245 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFS-EQT-K-FKGEVYA 159 (226)
Q Consensus 101 VvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs~~~~~~i~~f~-~~~-~-~pfpll~ 159 (226)
|..|++.|||+|++..+.| ++.|+..-.|..+......++. +.+ + ...|.+.
T Consensus 2 v~ly~~~~C~~C~~~~~~L-------~~~~~~~~~idi~~~~~~~~~~~~~~~~~~~vP~i~ 56 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTL-------DKLGAAYEWVDIEEDEGAADRVVSVNNGNMTVPTVK 56 (77)
T ss_pred EEEEECCCChhHHHHHHHH-------HHcCCceEEEeCcCCHhHHHHHHHHhCCCceeCEEE
Confidence 4577899999999866655 4456666666666444443333 332 2 3456554
No 139
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=95.80 E-value=0.009 Score=57.63 Aligned_cols=64 Identities=9% Similarity=0.072 Sum_probs=50.1
Q ss_pred CCCccCCCeEEEEEecCCCChhHHHHHHHHHHhHHHHHHc--CCEEEEEeCCCHHHHHHHHHHcCCc-ee
Q 027245 90 ISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDAS--GVALVLIGPGSVEQARTFSEQTKFK-GE 156 (226)
Q Consensus 90 Lsdl~~~~~vVVvF~R~~~Cp~C~~el~~L~~~~~~l~~~--Gv~lVaIs~~~~~~i~~f~~~~~~p-fp 156 (226)
|.++..+...++|-|.+.||..|...+|++++..+.+++. .+.+.=|-+... ..++.+++++ ||
T Consensus 35 f~~~i~~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~---~~~~~~y~v~gyP 101 (493)
T KOG0190|consen 35 FKETINGHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEE---SDLASKYEVRGYP 101 (493)
T ss_pred HHHHhccCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchh---hhhHhhhcCCCCC
Confidence 5555666788889999999999999999999999999987 455555555433 6778888775 55
No 140
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=95.64 E-value=0.033 Score=38.20 Aligned_cols=39 Identities=8% Similarity=0.167 Sum_probs=28.5
Q ss_pred EEEecCCCChhHHHHHHHHHHhHHHHHHcCCEEEEEeCCCH
Q 027245 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSV 141 (226)
Q Consensus 101 VvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs~~~~ 141 (226)
|..|.+.|||+|.+-.+.|.++.++ ..++.+.-|..++.
T Consensus 3 v~~f~~~~C~~C~~~~~~l~~l~~~--~~~i~~~~id~~~~ 41 (67)
T cd02973 3 IEVFVSPTCPYCPDAVQAANRIAAL--NPNISAEMIDAAEF 41 (67)
T ss_pred EEEEECCCCCCcHHHHHHHHHHHHh--CCceEEEEEEcccC
Confidence 5677889999999888877776543 24678877776653
No 141
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=95.50 E-value=0.078 Score=46.60 Aligned_cols=96 Identities=14% Similarity=0.208 Sum_probs=64.7
Q ss_pred CcCCCcEEecCCCCeEeCCCccCCCeEEEEEecCCCChhHHHHHHHHHHhHHHHHHcC---CEEEEEeCCCH-HHHH--H
Q 027245 73 NLLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASG---VALVLIGPGSV-EQAR--T 146 (226)
Q Consensus 73 ~~apdf~L~D~~G~~v~Lsdl~~~~~vVVvF~R~~~Cp~C~~el~~L~~~~~~l~~~G---v~lVaIs~~~~-~~i~--~ 146 (226)
...|..++.| .-++.+. .+.|+||-+-.+.|.+|..++..|..+..+|++.| |..++|+.-+. +.+. .
T Consensus 8 ~~~p~W~i~~----~~pm~~~--~G~VtvVALL~asc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN~~~~~s~~~~~~ 81 (238)
T PF04592_consen 8 KPPPPWKIGG----QDPMLNS--LGHVTVVALLQASCYFCLLQASRLEDLREKLENEGLSNISFMVVNHQGEHSRLKYWE 81 (238)
T ss_pred CCCCCceECC----chHhhhc--CCcEEeeeehhhhhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEcCCCcchhHHHHH
Confidence 3456666633 2334443 23455555556699999999999999999998765 67888887654 3443 3
Q ss_pred HHHHcCCceeEEe-c-CChHHHHHcCCccc
Q 027245 147 FSEQTKFKGEVYA-D-PNHSSYEALSFVSG 174 (226)
Q Consensus 147 f~~~~~~pfpll~-D-p~~~ly~alGv~~~ 174 (226)
+.++..-.||||. | .+..+...|+-.+.
T Consensus 82 l~~r~~~~ipVyqq~~~q~dvW~~L~G~kd 111 (238)
T PF04592_consen 82 LKRRVSEHIPVYQQDENQPDVWELLNGSKD 111 (238)
T ss_pred HHHhCCCCCceecCCccccCHHHHhCCCcC
Confidence 3344344499996 3 67889999887654
No 142
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=95.32 E-value=0.074 Score=40.60 Aligned_cols=67 Identities=13% Similarity=0.126 Sum_probs=45.2
Q ss_pred CCeEEEEEecCCCChhHHHHHHHHHH---hHHHHHHcCCEEEEEeCCCHHHHHHHHHHc---CCceeEEecC-ChH
Q 027245 96 DRKAVVAFARHFGCVLCRKRADYLAA---KKDVMDASGVALVLIGPGSVEQARTFSEQT---KFKGEVYADP-NHS 164 (226)
Q Consensus 96 ~~~vVVvF~R~~~Cp~C~~el~~L~~---~~~~l~~~Gv~lVaIs~~~~~~i~~f~~~~---~~pfpll~Dp-~~~ 164 (226)
+++.|+++|.+.||+.|..-....-. ..+.+. ....++.+..++++ ..++++.+ ++|.-++.|+ ++.
T Consensus 16 ~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~-~~~v~~~~d~~~~e-~~~~~~~~~~~~~P~~~~i~~~~g~ 89 (114)
T cd02958 16 EKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIR-ENFIFWQCDIDSSE-GQRFLQSYKVDKYPHIAIIDPRTGE 89 (114)
T ss_pred hCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHH-hCEEEEEecCCCcc-HHHHHHHhCccCCCeEEEEeCccCc
Confidence 46889999999999999986664332 234443 35666666666643 44566655 4677789999 554
No 143
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=95.11 E-value=0.016 Score=46.59 Aligned_cols=85 Identities=12% Similarity=0.177 Sum_probs=48.2
Q ss_pred CCeEEEEEecCCCChhHHHHHHHHHHhH--HHHHHcCCEEEEEeCCCHH-HHHHHHHHcCCceeEEecCChHHHHH-cCC
Q 027245 96 DRKAVVAFARHFGCVLCRKRADYLAAKK--DVMDASGVALVLIGPGSVE-QARTFSEQTKFKGEVYADPNHSSYEA-LSF 171 (226)
Q Consensus 96 ~~~vVVvF~R~~~Cp~C~~el~~L~~~~--~~l~~~Gv~lVaIs~~~~~-~i~~f~~~~~~pfpll~Dp~~~ly~a-lGv 171 (226)
.++.|+++|...||+.|++--...-+.. .++.+.+..+|-+-.+..+ .... ...++|.-++.|+++++... .|-
T Consensus 22 ~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~~Fv~V~l~~d~td~~~~~--~g~~vPtivFld~~g~vi~~i~Gy 99 (130)
T cd02960 22 SNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQEDFIMLNLVHETTDKNLSP--DGQYVPRIMFVDPSLTVRADITGR 99 (130)
T ss_pred CCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHhCeEEEEEEeccCCCCcCc--cCcccCeEEEECCCCCCccccccc
Confidence 3566777799999999998777655432 2333334544444444321 1111 22467778999999876444 333
Q ss_pred ccccceeecch
Q 027245 172 VSGVLVTFTPK 182 (226)
Q Consensus 172 ~~~~~~t~~p~ 182 (226)
.........|.
T Consensus 100 ~~~~~~~y~~~ 110 (130)
T cd02960 100 YSNRLYTYEPA 110 (130)
T ss_pred ccCccceeCcC
Confidence 33333344443
No 144
>smart00594 UAS UAS domain.
Probab=94.99 E-value=0.1 Score=40.66 Aligned_cols=66 Identities=11% Similarity=0.100 Sum_probs=46.9
Q ss_pred CCeEEEEEecCCCChhHHHHHHHHHHh---HHHHHHcCCEEEEEeCCCHHHHHHHHHHc---CCceeEEecCCh
Q 027245 96 DRKAVVAFARHFGCVLCRKRADYLAAK---KDVMDASGVALVLIGPGSVEQARTFSEQT---KFKGEVYADPNH 163 (226)
Q Consensus 96 ~~~vVVvF~R~~~Cp~C~~el~~L~~~---~~~l~~~Gv~lVaIs~~~~~~i~~f~~~~---~~pfpll~Dp~~ 163 (226)
++|.++++|.+.||+.|.+..+++-.. .+.+ +.+..++.+...+.+. .++++.+ ++|+-++.|+++
T Consensus 26 ~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i-~~~fv~~~~dv~~~eg-~~l~~~~~~~~~P~~~~l~~~~ 97 (122)
T smart00594 26 QRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLI-RENFIFWQVDVDTSEG-QRVSQFYKLDSFPYVAIVDPRT 97 (122)
T ss_pred hcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHH-HcCEEEEEecCCChhH-HHHHHhcCcCCCCEEEEEecCC
Confidence 467899999999999999988775443 3344 4466777777766653 4556555 567778888886
No 145
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=94.84 E-value=0.098 Score=44.63 Aligned_cols=44 Identities=9% Similarity=-0.004 Sum_probs=30.5
Q ss_pred CCeEEEEEecCCCChhHHHHHHHHHHhHHHHHHcCCEEEEEeCCCH
Q 027245 96 DRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSV 141 (226)
Q Consensus 96 ~~~vVVvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs~~~~ 141 (226)
+++++|+.|++.||++|..-.+.+.+...+ ...+.+.-|..+..
T Consensus 132 ~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~--~~~i~~~~vD~~~~ 175 (215)
T TIGR02187 132 DEPVRIEVFVTPTCPYCPYAVLMAHKFALA--NDKILGEMIEANEN 175 (215)
T ss_pred CCCcEEEEEECCCCCCcHHHHHHHHHHHHh--cCceEEEEEeCCCC
Confidence 468888889999999999766655554443 23466666666553
No 146
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=94.82 E-value=0.074 Score=45.38 Aligned_cols=42 Identities=19% Similarity=0.396 Sum_probs=30.3
Q ss_pred CCeEEEEEec--CCCChhHHHHHHHHHHhHHHHHHcCCEEEEEeCC
Q 027245 96 DRKAVVAFAR--HFGCVLCRKRADYLAAKKDVMDASGVALVLIGPG 139 (226)
Q Consensus 96 ~~~vVVvF~R--~~~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs~~ 139 (226)
.+..+++|+- +.||++|+.-.+.|.+..+++. ++++..|..+
T Consensus 19 ~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~--~~~i~~v~vd 62 (215)
T TIGR02187 19 NPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSP--KLKLEIYDFD 62 (215)
T ss_pred CCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCC--CceEEEEecC
Confidence 3445556555 4999999999999998887773 4556666665
No 147
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=94.81 E-value=0.11 Score=36.64 Aligned_cols=57 Identities=18% Similarity=0.238 Sum_probs=35.1
Q ss_pred EEEecCCCChhHHHHHHHHHHhHHHHHHcCCEEEEEeCCC-HHHHHH-HHHHcCC-cee-EEec
Q 027245 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGS-VEQART-FSEQTKF-KGE-VYAD 160 (226)
Q Consensus 101 VvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs~~~-~~~i~~-f~~~~~~-pfp-ll~D 160 (226)
|+.|...|||+|++-.+.|.+.. +. ..+.++-|..++ .+.+++ +.+.++. .+| ++.|
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~--i~-~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~i~ 61 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLN--VK-PAYEVVELDQLSNGSEIQDYLEEITGQRTVPNIFIN 61 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcC--CC-CCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeEEEC
Confidence 35667999999999888887765 11 126677777653 334444 4455554 456 4443
No 148
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=94.78 E-value=0.096 Score=41.44 Aligned_cols=46 Identities=13% Similarity=0.177 Sum_probs=32.0
Q ss_pred CCeEEEEEec------CCCChhHHHHHHHHHHhHHHHHHcCCEEEEEeCCCHH
Q 027245 96 DRKAVVAFAR------HFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVE 142 (226)
Q Consensus 96 ~~~vVVvF~R------~~~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs~~~~~ 142 (226)
++++.|+|+- .+|||.|+.--+.+.+.... ...+..+|-|..|+..
T Consensus 19 ~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~-~~~~~~lv~v~VG~r~ 70 (119)
T PF06110_consen 19 GKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKK-APENARLVYVEVGDRP 70 (119)
T ss_dssp TSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH--STTEEEEEEE---HH
T ss_pred CCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHh-CCCCceEEEEEcCCHH
Confidence 3567777773 46999999999999987776 3348888988888764
No 149
>PTZ00062 glutaredoxin; Provisional
Probab=94.69 E-value=0.06 Score=46.33 Aligned_cols=40 Identities=8% Similarity=0.043 Sum_probs=30.4
Q ss_pred eEEEEEecCCCChhHHHHHHHHHHhHHHHHHcCCEEEEEeCC
Q 027245 98 KAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPG 139 (226)
Q Consensus 98 ~vVVvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs~~ 139 (226)
..+|+||++.|||.|+...+.|.++.+++. .+..+-|..+
T Consensus 18 g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~--~~~F~~V~~d 57 (204)
T PTZ00062 18 GKLVLYVKSSKEPEYEQLMDVCNALVEDFP--SLEFYVVNLA 57 (204)
T ss_pred CcEEEEEeCCCCcchHHHHHHHHHHHHHCC--CcEEEEEccc
Confidence 567999999999999998888888877663 3555555443
No 150
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=94.46 E-value=0.19 Score=36.34 Aligned_cols=58 Identities=9% Similarity=0.136 Sum_probs=37.7
Q ss_pred EEEecCCCChhHHHHHHHHHHhHHHHHHcCCEEEEEeCCC-HHHHHHHHHHcC---Ccee-EEec
Q 027245 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGS-VEQARTFSEQTK---FKGE-VYAD 160 (226)
Q Consensus 101 VvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs~~~-~~~i~~f~~~~~---~pfp-ll~D 160 (226)
|..|-..|||+|.+-...|.++..++ .|+...-|..+. ....+++.+..+ ..+| |+.|
T Consensus 3 v~iy~~~~C~~C~~a~~~L~~l~~~~--~~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~ifi~ 65 (85)
T PRK11200 3 VVIFGRPGCPYCVRAKELAEKLSEER--DDFDYRYVDIHAEGISKADLEKTVGKPVETVPQIFVD 65 (85)
T ss_pred EEEEeCCCChhHHHHHHHHHhhcccc--cCCcEEEEECCCChHHHHHHHHHHCCCCCcCCEEEEC
Confidence 45677899999999888888877644 477777777653 222334444444 3566 4454
No 151
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=94.45 E-value=0.075 Score=42.35 Aligned_cols=66 Identities=11% Similarity=0.211 Sum_probs=50.7
Q ss_pred EEEecCCCChhHHHHHHHHHHhHHHHHHcCCEEEEEeC--C--CHHHHHHHHHHcCCceeEEecCChHHHHHcCCcc
Q 027245 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGP--G--SVEQARTFSEQTKFKGEVYADPNHSSYEALSFVS 173 (226)
Q Consensus 101 VvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs~--~--~~~~i~~f~~~~~~pfpll~Dp~~~ly~alGv~~ 173 (226)
|.+|...+|+.|++-.. .|++.|+....|.. + +.+++..+.+..+.++.-+.......|+.+++..
T Consensus 2 i~iY~~~~C~~C~ka~~-------~L~~~gi~~~~idi~~~~~~~~eL~~~l~~~~~g~~~lin~~~~~~k~l~~~~ 71 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKA-------WLEEHDIPFTERNIFSSPLTIDEIKQILRMTEDGTDEIISTRSKVFQKLNVDV 71 (131)
T ss_pred EEEEeCCCChHHHHHHH-------HHHHcCCCcEEeeccCChhhHHHHHHHHHHhcCCHHHHHhcCcHHHHhCCCCc
Confidence 56788999999998544 44556766655553 2 3478999999998777777789999999998875
No 152
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=94.40 E-value=0.098 Score=44.43 Aligned_cols=41 Identities=22% Similarity=0.148 Sum_probs=34.0
Q ss_pred eEEEEEecCCCChhHHHHHHHHHHhHHHHHHcCCEEEEEeCCC
Q 027245 98 KAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGS 140 (226)
Q Consensus 98 ~vVVvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs~~~ 140 (226)
..|||.|++.||+.|+.-.+.|.++..++. .+.++-|..+.
T Consensus 103 ~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~--~vkFvkI~ad~ 143 (192)
T cd02988 103 TWVVVHLYKDGIPLCRLLNQHLSELARKFP--DTKFVKIISTQ 143 (192)
T ss_pred CEEEEEEECCCCchHHHHHHHHHHHHHHCC--CCEEEEEEhHH
Confidence 478888899999999999999999888773 57888777764
No 153
>PHA02125 thioredoxin-like protein
Probab=94.35 E-value=0.087 Score=37.41 Aligned_cols=21 Identities=19% Similarity=0.241 Sum_probs=17.7
Q ss_pred EEEecCCCChhHHHHHHHHHH
Q 027245 101 VAFARHFGCVLCRKRADYLAA 121 (226)
Q Consensus 101 VvF~R~~~Cp~C~~el~~L~~ 121 (226)
|+.|.+.||++|+.-.+.|.+
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~ 22 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLAN 22 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHH
Confidence 778899999999987777753
No 154
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=94.20 E-value=0.27 Score=33.19 Aligned_cols=55 Identities=13% Similarity=0.201 Sum_probs=35.1
Q ss_pred EEEecCCCChhHHHHHHHHHHhHHHHHHcCCEEEEEeCCC-HHHHHHHHHHcC-CceeEEecCC
Q 027245 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGS-VEQARTFSEQTK-FKGEVYADPN 162 (226)
Q Consensus 101 VvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs~~~-~~~i~~f~~~~~-~pfpll~Dp~ 162 (226)
|..|...|||.|.+-...|. +.|+....|..+. .+..+.|.+.++ ..+|++.+.+
T Consensus 2 v~l~~~~~c~~c~~~~~~l~-------~~~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~~~~ 58 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLD-------ERGIPFEEVDVDEDPEALEELKKLNGYRSVPVVVIGD 58 (73)
T ss_pred EEEEeCCCChhHHHHHHHHH-------HCCCCeEEEeCCCCHHHHHHHHHHcCCcccCEEEECC
Confidence 45677899999997544443 4577777777764 344455655544 4578776654
No 155
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=94.16 E-value=0.02 Score=45.64 Aligned_cols=66 Identities=11% Similarity=0.142 Sum_probs=42.0
Q ss_pred CeEEEEEecCCCChhHHHHHHHHHHhHHHHHHcCCEEEEEeCCCH-HHHHHHHHHc--CCceeEEecCChH
Q 027245 97 RKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSV-EQARTFSEQT--KFKGEVYADPNHS 164 (226)
Q Consensus 97 ~~vVVvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs~~~~-~~i~~f~~~~--~~pfpll~Dp~~~ 164 (226)
++.-++.|-..|||.|...+|.|.+..+.. .++.+-.|..|.. +..++|.... .+|--|+.|.++.
T Consensus 41 ~~~~ilvi~e~WCgD~~~~vP~l~kiae~~--p~i~~~~i~rd~~~el~~~~lt~g~~~IP~~I~~d~~~~ 109 (129)
T PF14595_consen 41 KPYNILVITETWCGDCARNVPVLAKIAEAN--PNIEVRIILRDENKELMDQYLTNGGRSIPTFIFLDKDGK 109 (129)
T ss_dssp S-EEEEEE--TT-HHHHHHHHHHHHHHHH---TTEEEEEE-HHHHHHHTTTTTT-SS--SSEEEEE-TT--
T ss_pred CCcEEEEEECCCchhHHHHHHHHHHHHHhC--CCCeEEEEEecCChhHHHHHHhCCCeecCEEEEEcCCCC
Confidence 456666778999999999999999998853 3788888888754 5566776632 3555578887744
No 156
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=94.14 E-value=0.077 Score=39.43 Aligned_cols=53 Identities=9% Similarity=0.071 Sum_probs=38.1
Q ss_pred CCeEEEEEecCCCChhHHHHHHHHHHhHHHHHHcCCEEEEEeCCCHHHHHHHHHHcCC
Q 027245 96 DRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKF 153 (226)
Q Consensus 96 ~~~vVVvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs~~~~~~i~~f~~~~~~ 153 (226)
++|+-|.+|.+.||+.|..-.+.+.+..++. .++.+..|..+... ..++++++
T Consensus 11 ~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~--~~i~~~~vd~~~~~---e~a~~~~V 63 (89)
T cd03026 11 NGPINFETYVSLSCHNCPDVVQALNLMAVLN--PNIEHEMIDGALFQ---DEVEERGI 63 (89)
T ss_pred CCCEEEEEEECCCCCCcHHHHHHHHHHHHHC--CCceEEEEEhHhCH---HHHHHcCC
Confidence 5789899999999999998777776666543 25788888776542 33445565
No 157
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=94.01 E-value=0.28 Score=32.97 Aligned_cols=53 Identities=21% Similarity=0.399 Sum_probs=36.3
Q ss_pred EEEecCCCChhHHHHHHHHHHhHHHHHHcCCEEEEEeCCCH-HHHHHHHHHcC-Ccee-EEec
Q 027245 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSV-EQARTFSEQTK-FKGE-VYAD 160 (226)
Q Consensus 101 VvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs~~~~-~~i~~f~~~~~-~pfp-ll~D 160 (226)
|+.|...+||.|.+-... |++.|+..-.+..++. +..+.+.+..+ ..+| |+.|
T Consensus 1 V~vy~~~~C~~C~~~~~~-------L~~~~i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~i~ 56 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEF-------LDEKGIPYEEVDVDEDEEAREELKELSGVRTVPQVFID 56 (60)
T ss_dssp EEEEESTTSHHHHHHHHH-------HHHTTBEEEEEEGGGSHHHHHHHHHHHSSSSSSEEEET
T ss_pred cEEEEcCCCcCHHHHHHH-------HHHcCCeeeEcccccchhHHHHHHHHcCCCccCEEEEC
Confidence 456778999999975444 4678899888888876 45555555545 4577 4443
No 158
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=93.78 E-value=0.12 Score=40.68 Aligned_cols=64 Identities=8% Similarity=-0.036 Sum_probs=38.8
Q ss_pred eCCCccCCCeEEEEEecC--CCChhHHHHHHHHHHhHHHHHHc--CCEEEEEeCCCHH--HHHHHHHHcCCc---ee
Q 027245 89 PISDLWKDRKAVVAFARH--FGCVLCRKRADYLAAKKDVMDAS--GVALVLIGPGSVE--QARTFSEQTKFK---GE 156 (226)
Q Consensus 89 ~Lsdl~~~~~vVVvF~R~--~~Cp~C~~el~~L~~~~~~l~~~--Gv~lVaIs~~~~~--~i~~f~~~~~~p---fp 156 (226)
+|.+.+++.+.+||-|-+ .||. + ++...++.+++.++ .+.|.-|.+++.. +-+..++++++. ||
T Consensus 10 nF~~~v~~~~~vlV~F~A~~Pwc~---k-~~~~~~LA~e~~~aa~~v~lakVd~~d~~~~~~~~L~~~y~I~~~gyP 82 (116)
T cd03007 10 TFYKVIPKFKYSLVKFDTAYPYGE---K-HEAFTRLAESSASATDDLLVAEVGIKDYGEKLNMELGERYKLDKESYP 82 (116)
T ss_pred hHHHHHhcCCcEEEEEeCCCCCCC---C-hHHHHHHHHHHHhhcCceEEEEEecccccchhhHHHHHHhCCCcCCCC
Confidence 355556667788888889 6666 3 24444444444322 2666667776521 236788899885 77
No 159
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=93.59 E-value=0.18 Score=39.02 Aligned_cols=66 Identities=12% Similarity=0.176 Sum_probs=51.4
Q ss_pred EEEecCCCChhHHHHHHHHHHhHHHHHHcCCEEEEEeCC----CHHHHHHHHHHcCCceeEEecCChHHHHHcCCcc
Q 027245 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPG----SVEQARTFSEQTKFKGEVYADPNHSSYEALSFVS 173 (226)
Q Consensus 101 VvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs~~----~~~~i~~f~~~~~~pfpll~Dp~~~ly~alGv~~ 173 (226)
|.+|...+|+.|++-... |++.|+.+..|... +.+++++|.+..+.++.-+.......|+.+++..
T Consensus 2 i~iY~~~~C~~c~ka~~~-------L~~~gi~~~~idi~~~~~~~~el~~~~~~~~~~~~~l~n~~~~~~k~l~~~~ 71 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQW-------LEEHQIPFEERNLFKQPLTKEELKEILSLTENGVEDIISTRSKAFKNLNIDI 71 (115)
T ss_pred EEEEeCCCCHHHHHHHHH-------HHHCCCceEEEecCCCcchHHHHHHHHHHhcCCHHHHHhcCcHHHHHcCCCc
Confidence 557889999999975444 45567776666542 2478999999998888878889999999999875
No 160
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=93.53 E-value=0.13 Score=38.90 Aligned_cols=66 Identities=14% Similarity=0.252 Sum_probs=49.4
Q ss_pred EEEecCCCChhHHHHHHHHHHhHHHHHHcCCEEEEEeCC----CHHHHHHHHHHcCCceeEEecCChHHHHHcCCcc
Q 027245 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPG----SVEQARTFSEQTKFKGEVYADPNHSSYEALSFVS 173 (226)
Q Consensus 101 VvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs~~----~~~~i~~f~~~~~~pfpll~Dp~~~ly~alGv~~ 173 (226)
|.+|...+|+.|++-... |++.|+....|... +.++++++..+.+.+..-+.......|+.++...
T Consensus 1 i~iY~~~~C~~c~ka~~~-------L~~~~i~~~~idi~~~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~l~~~~ 70 (105)
T cd02977 1 ITIYGNPNCSTSRKALAW-------LEEHGIEYEFIDYLKEPPTKEELKELLAKLGLGVEDLFNTRGTPYRKLGLAD 70 (105)
T ss_pred CEEEECCCCHHHHHHHHH-------HHHcCCCcEEEeeccCCCCHHHHHHHHHhcCCCHHHHHhcCCchHHHcCCcc
Confidence 357888999999975444 44566665555543 3578999999989877777788899999998863
No 161
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=93.38 E-value=0.26 Score=43.93 Aligned_cols=42 Identities=17% Similarity=0.170 Sum_probs=34.5
Q ss_pred CCeEEEEEecCCCChhHHHHHHHHHHhHHHHHHcCCEEEEEeCCCH
Q 027245 96 DRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSV 141 (226)
Q Consensus 96 ~~~vVVvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs~~~~ 141 (226)
++..+++||+ ..||+|++.++-|+...++ .|+.|++||.|..
T Consensus 150 ~~~gL~fFy~-~~C~~C~~~apil~~fa~~---ygi~v~~VS~DG~ 191 (256)
T TIGR02739 150 QSYGLFFFYR-GKSPISQKMAPVIQAFAKE---YGISVIPISVDGT 191 (256)
T ss_pred hceeEEEEEC-CCCchhHHHHHHHHHHHHH---hCCeEEEEecCCC
Confidence 3456777776 7799999999999998874 5899999999864
No 162
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=93.25 E-value=0.43 Score=33.41 Aligned_cols=54 Identities=19% Similarity=0.302 Sum_probs=35.7
Q ss_pred EEEecCCCChhHHHHHHHHHHhHHHHHHcCCEEEEEeCCCHHHHHHHHHHcCC-ceeEEecC
Q 027245 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKF-KGEVYADP 161 (226)
Q Consensus 101 VvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs~~~~~~i~~f~~~~~~-pfpll~Dp 161 (226)
|.+|-..+||.|++-...|. +.|+..-.|..+......+..++.+. ..|++...
T Consensus 1 v~ly~~~~Cp~C~~ak~~L~-------~~~i~~~~~di~~~~~~~~~~~~~g~~~vP~v~~~ 55 (72)
T TIGR02194 1 ITVYSKNNCVQCKMTKKALE-------EHGIAFEEINIDEQPEAIDYVKAQGFRQVPVIVAD 55 (72)
T ss_pred CEEEeCCCCHHHHHHHHHHH-------HCCCceEEEECCCCHHHHHHHHHcCCcccCEEEEC
Confidence 35678899999998666554 56888777777654444444444564 67865553
No 163
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=93.22 E-value=0.42 Score=34.18 Aligned_cols=53 Identities=21% Similarity=0.217 Sum_probs=35.8
Q ss_pred EEEecCCCChhHHHHHHHHHHhHHHHHHcCCEEEEEeCCCHHHHHHHHHHcC-CceeEEec
Q 027245 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTK-FKGEVYAD 160 (226)
Q Consensus 101 VvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs~~~~~~i~~f~~~~~-~pfpll~D 160 (226)
|+.|...|||+|.+--..| ++.|+....|..+..+....+.+.++ -.+|++..
T Consensus 10 V~ly~~~~Cp~C~~ak~~L-------~~~gi~y~~idi~~~~~~~~~~~~~g~~~vP~i~i 63 (79)
T TIGR02190 10 VVVFTKPGCPFCAKAKATL-------KEKGYDFEEIPLGNDARGRSLRAVTGATTVPQVFI 63 (79)
T ss_pred EEEEECCCCHhHHHHHHHH-------HHcCCCcEEEECCCChHHHHHHHHHCCCCcCeEEE
Confidence 4456789999999755555 45677777777776555556666666 35775544
No 164
>PRK12559 transcriptional regulator Spx; Provisional
Probab=93.20 E-value=0.21 Score=39.82 Aligned_cols=66 Identities=12% Similarity=0.223 Sum_probs=50.4
Q ss_pred EEEecCCCChhHHHHHHHHHHhHHHHHHcCCEEEEEeC--C--CHHHHHHHHHHcCCceeEEecCChHHHHHcCCcc
Q 027245 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGP--G--SVEQARTFSEQTKFKGEVYADPNHSSYEALSFVS 173 (226)
Q Consensus 101 VvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs~--~--~~~~i~~f~~~~~~pfpll~Dp~~~ly~alGv~~ 173 (226)
|.+|-..+|+.|++-.. .|++.|+....|.. + +.++++.|.+..+.+..-+.......|+.+++..
T Consensus 2 i~iY~~~~C~~crkA~~-------~L~~~gi~~~~~di~~~~~s~~el~~~l~~~~~g~~~lin~~~~~~k~l~~~~ 71 (131)
T PRK12559 2 VVLYTTASCASCRKAKA-------WLEENQIDYTEKNIVSNSMTVDELKSILRLTEEGATEIISTRSKTFQDLNINI 71 (131)
T ss_pred EEEEeCCCChHHHHHHH-------HHHHcCCCeEEEEeeCCcCCHHHHHHHHHHcCCCHHHHHhcCcHHHHhCCCCc
Confidence 56788999999998544 34556766555543 2 4589999999988877767788999999998864
No 165
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=93.10 E-value=0.16 Score=45.10 Aligned_cols=41 Identities=12% Similarity=0.169 Sum_probs=34.1
Q ss_pred CCeEEEEEecCCCChhHHHHHHHHHHhHHHHHHcCCEEEEEeCCC
Q 027245 96 DRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGS 140 (226)
Q Consensus 96 ~~~vVVvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs~~~ 140 (226)
++..+++||+ ..||+|.+.++-|+...+ +.|+.|++||.|.
T Consensus 143 ~~~GL~fFy~-s~Cp~C~~~aPil~~fa~---~yg~~v~~VS~DG 183 (248)
T PRK13703 143 EHYGLMFFYR-GQDPIDGQLAQVINDFRD---TYGLSVIPVSVDG 183 (248)
T ss_pred hcceEEEEEC-CCCchhHHHHHHHHHHHH---HhCCeEEEEecCC
Confidence 3456777776 779999999999999887 4699999999986
No 166
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=92.59 E-value=0.51 Score=35.49 Aligned_cols=59 Identities=15% Similarity=0.285 Sum_probs=33.5
Q ss_pred cCCCeEEEEEecC----CCChhHHHHHHHHHHhHHHHHHcCCEEEEEeCCCHHHH-HHHHHHcCC-cee-EEec
Q 027245 94 WKDRKAVVAFARH----FGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQA-RTFSEQTKF-KGE-VYAD 160 (226)
Q Consensus 94 ~~~~~vVVvF~R~----~~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs~~~~~~i-~~f~~~~~~-pfp-ll~D 160 (226)
..+++ ||+|-.+ .|||+|.+--.. |++.|+....|..++...+ ++..+..+. ++| |+.|
T Consensus 9 i~~~~-Vvvf~kg~~~~~~Cp~C~~ak~l-------L~~~~i~~~~~di~~~~~~~~~l~~~tg~~tvP~vfi~ 74 (97)
T TIGR00365 9 IKENP-VVLYMKGTPQFPQCGFSARAVQI-------LKACGVPFAYVNVLEDPEIRQGIKEYSNWPTIPQLYVK 74 (97)
T ss_pred hccCC-EEEEEccCCCCCCCchHHHHHHH-------HHHcCCCEEEEECCCCHHHHHHHHHHhCCCCCCEEEEC
Confidence 34444 5666664 799999964443 4456666666666443333 344444454 466 4444
No 167
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=92.50 E-value=0.21 Score=38.45 Aligned_cols=65 Identities=23% Similarity=0.380 Sum_probs=48.8
Q ss_pred EEecCCCChhHHHHHHHHHHhHHHHHHcCCEEEEEeC--C--CHHHHHHHHHHcCCceeEEecCChHHHHHcCCcc
Q 027245 102 AFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGP--G--SVEQARTFSEQTKFKGEVYADPNHSSYEALSFVS 173 (226)
Q Consensus 102 vF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs~--~--~~~~i~~f~~~~~~pfpll~Dp~~~ly~alGv~~ 173 (226)
..|...+||.|++-...|. +.|+....|.. + +.++++++.++.+.+..-+.......|+.+++..
T Consensus 2 ~iY~~~~C~~c~ka~~~L~-------~~~i~~~~idi~~~~~~~~el~~~~~~~~~~~~~l~~~~~~~~~~l~~~~ 70 (111)
T cd03036 2 KFYEYPKCSTCRKAKKWLD-------EHGVDYTAIDIVEEPPSKEELKKWLEKSGLPLKKFFNTSGKSYRELGLKD 70 (111)
T ss_pred EEEECCCCHHHHHHHHHHH-------HcCCceEEecccCCcccHHHHHHHHHHcCCCHHHHHhcCCchHHhCCccc
Confidence 4677899999998655544 45666555543 2 3478999999999988767778888999999863
No 168
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=92.50 E-value=0.86 Score=31.53 Aligned_cols=52 Identities=13% Similarity=0.108 Sum_probs=34.2
Q ss_pred EEEecCCCChhHHHHHHHHHHhHHHHHHcCCEEEEEeCCC-HHHHHHHHHHcCC--ceeEEe
Q 027245 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGS-VEQARTFSEQTKF--KGEVYA 159 (226)
Q Consensus 101 VvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs~~~-~~~i~~f~~~~~~--pfpll~ 159 (226)
|..|...+||.|.+-...|+ +.|+..-.|..+. ++..+++.+..+. .+|.+.
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~-------~~~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~ 56 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLD-------KKGVDYEEIDVDGDPALREEMINRSGGRRTVPQIF 56 (75)
T ss_pred EEEEeCCCChHHHHHHHHHH-------HCCCcEEEEECCCCHHHHHHHHHHhCCCCccCEEE
Confidence 45677899999997555554 4677777777665 4555666666553 577443
No 169
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=92.34 E-value=0.074 Score=52.07 Aligned_cols=61 Identities=13% Similarity=0.073 Sum_probs=48.3
Q ss_pred CeEEEEEecCCCChhHHHHHHHHHHhHHHHHH--cCCEEEEEeCCCHHHHHHHHHHcCCc-eeEE
Q 027245 97 RKAVVAFARHFGCVLCRKRADYLAAKKDVMDA--SGVALVLIGPGSVEQARTFSEQTKFK-GEVY 158 (226)
Q Consensus 97 ~~vVVvF~R~~~Cp~C~~el~~L~~~~~~l~~--~Gv~lVaIs~~~~~~i~~f~~~~~~p-fpll 158 (226)
++.-+|-|.+.||+.|+.++|.+.++...+++ .=+.|.+|.|-+. .-.+.|++++++ ||.+
T Consensus 57 ~~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~-~N~~lCRef~V~~~Ptl 120 (606)
T KOG1731|consen 57 RKAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADE-ENVKLCREFSVSGYPTL 120 (606)
T ss_pred chhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccch-hhhhhHhhcCCCCCcee
Confidence 45777888899999999999999998888775 3366888888875 456688898887 5643
No 170
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=92.30 E-value=0.64 Score=34.23 Aligned_cols=61 Identities=23% Similarity=0.316 Sum_probs=32.8
Q ss_pred CccCCCeEEEEEecC----CCChhHHHHHHHHHHhHHHHHHcCCEEEEEeCCCHHHH-HHHHHHcCC-cee-EEec
Q 027245 92 DLWKDRKAVVAFARH----FGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQA-RTFSEQTKF-KGE-VYAD 160 (226)
Q Consensus 92 dl~~~~~vVVvF~R~----~~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs~~~~~~i-~~f~~~~~~-pfp-ll~D 160 (226)
++.++++ ||+|--. .|||+|.+-...| ++.|+....|..+...++ +...+.++. .+| |+.|
T Consensus 3 ~~i~~~~-vvvf~k~~~~~~~Cp~C~~ak~~L-------~~~~i~y~~idv~~~~~~~~~l~~~~g~~tvP~vfi~ 70 (90)
T cd03028 3 KLIKENP-VVLFMKGTPEEPRCGFSRKVVQIL-------NQLGVDFGTFDILEDEEVRQGLKEYSNWPTFPQLYVN 70 (90)
T ss_pred hhhccCC-EEEEEcCCCCCCCCcHHHHHHHHH-------HHcCCCeEEEEcCCCHHHHHHHHHHhCCCCCCEEEEC
Confidence 3455555 4555443 6999999754444 344566555555443334 344444443 466 4444
No 171
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=92.17 E-value=0.38 Score=38.40 Aligned_cols=66 Identities=15% Similarity=0.146 Sum_probs=51.0
Q ss_pred EEEecCCCChhHHHHHHHHHHhHHHHHHcCCEEEEEeCC----CHHHHHHHHHHcCCceeEEecCChHHHHHcCCcc
Q 027245 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPG----SVEQARTFSEQTKFKGEVYADPNHSSYEALSFVS 173 (226)
Q Consensus 101 VvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs~~----~~~~i~~f~~~~~~pfpll~Dp~~~ly~alGv~~ 173 (226)
|..|-..+|+.|++-. +.|++.|+....|... +.++++.+.+..+.++.-+.......|+.++...
T Consensus 2 i~iY~~~~C~~crkA~-------~~L~~~~i~~~~~d~~~~~~s~~eL~~~l~~~~~~~~~lin~~~~~~k~L~~~~ 71 (132)
T PRK13344 2 IKIYTISSCTSCKKAK-------TWLNAHQLSYKEQNLGKEPLTKEEILAILTKTENGIESIVSSKNRYAKALDCDI 71 (132)
T ss_pred EEEEeCCCCHHHHHHH-------HHHHHcCCCeEEEECCCCCCCHHHHHHHHHHhCCCHHHhhccCcHHHHhCCcch
Confidence 4567889999999843 4456677776666543 3579999999999888766778999999998764
No 172
>cd02979 PHOX_C FAD-dependent Phenol hydoxylase (PHOX) family, C-terminal TRX-fold domain; composed of proteins similar to PHOX from the aerobic topsoil yeast Trichosporon cutaneum. PHOX is a flavoprotein monooxygenase that catalyzes the hydroxylation of phenol and simple phenol derivatives in the ortho position with the consumption of NADPH and oxygen. This is the first step in the biodegradation and detoxification of phenolic compounds. PHOX contains three domains. The substrate and FAD/NAD(P) binding sites are contained in the first two domains, which adopt a complicated folding pattern. The third or C-terminal domain contains a TRX fold and is involved in dimerization. The functional unit of PHOX is a dimer, although active tetramers of the recombinant enzyme can be isolated when overproduced in bacteria.
Probab=92.15 E-value=0.61 Score=38.64 Aligned_cols=111 Identities=21% Similarity=0.292 Sum_probs=71.2
Q ss_pred cCcCCCcEEec-CCCCeEeCCCccC--CCeEEEEEecCCCChhHHHHHHHHHHhHHHHH-------------HcCCEEEE
Q 027245 72 KNLLDTVKVYD-VNGNAIPISDLWK--DRKAVVAFARHFGCVLCRKRADYLAAKKDVMD-------------ASGVALVL 135 (226)
Q Consensus 72 g~~apdf~L~D-~~G~~v~Lsdl~~--~~~vVVvF~R~~~Cp~C~~el~~L~~~~~~l~-------------~~Gv~lVa 135 (226)
|..+|++.+.. .+|+++.|.+.+. ++.-|++|-...-++...+.+..|.+..+.-. ..=+.+++
T Consensus 1 G~R~~~a~V~r~aD~~p~~L~~~~~adGrfrI~vFagd~~~~~~~~~l~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (167)
T cd02979 1 GRRFPSAPVVRQADALPVHLGHRLPADGRFRIYVFAGDIAPAQQKSRLTQLCDALDSPDSFPLRYTPRGADPDSVFDVVT 80 (167)
T ss_pred CCcCCCceEEEecCCCCHhHhhhccCCCCEEEEEEcCCCCchhHHHHHHHHHHHHcCCcchHhhcCCCCCCCCCcEEEEE
Confidence 56788888887 5899999887664 35678888776677677666666666432211 12266888
Q ss_pred EeCCCHHH---------HHHHHHHcCCcee-EEecCC------hHHHHHcCCcc--ccceeecch
Q 027245 136 IGPGSVEQ---------ARTFSEQTKFKGE-VYADPN------HSSYEALSFVS--GVLVTFTPK 182 (226)
Q Consensus 136 Is~~~~~~---------i~~f~~~~~~pfp-ll~Dp~------~~ly~alGv~~--~~~~t~~p~ 182 (226)
|....... ...+.+.+++.+. +|+|.+ +..|+.||+.+ +....+-|.
T Consensus 81 I~~~~~~~~e~~dlP~~~~p~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~gv~~~~g~vvvvRPD 145 (167)
T cd02979 81 IHAAPRREIELLDLPAVLRPFGEKKGWDYEKIYADDDSYHEGHGDAYEKYGIDPERGAVVVVRPD 145 (167)
T ss_pred EecCCccccchhhCcHhhcCCCCccccceeeEEecCccccCCcccHHHhhCCCCCCCCEEEECCC
Confidence 88775322 2222244456654 899865 67999999984 333344454
No 173
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=92.09 E-value=0.37 Score=37.25 Aligned_cols=64 Identities=20% Similarity=0.271 Sum_probs=49.3
Q ss_pred EEecCCCChhHHHHHHHHHHhHHHHHHcCCEEEEEeCCC----HHHHHHHHHHcCCceeEEecCChHHHHHcCCc
Q 027245 102 AFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGS----VEQARTFSEQTKFKGEVYADPNHSSYEALSFV 172 (226)
Q Consensus 102 vF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs~~~----~~~i~~f~~~~~~pfpll~Dp~~~ly~alGv~ 172 (226)
.+|...+||.|++-...|. +.|+....|.... .+++.++.+..+..+.-+.+.....|+.+++.
T Consensus 2 ~iY~~~~C~~c~ka~~~L~-------~~~i~~~~idi~~~~~~~~el~~l~~~~~~~~~~lin~~~~~~k~l~~~ 69 (117)
T TIGR01617 2 KVYGSPNCTTCKKARRWLE-------ANGIEYQFIDIGEDGPTREELLDILSLLEDGIDPLLNTRGQSYRALNTS 69 (117)
T ss_pred EEEeCCCCHHHHHHHHHHH-------HcCCceEEEecCCChhhHHHHHHHHHHcCCCHHHheeCCCcchhhCCch
Confidence 4678899999997655544 4677766666532 46888999999988887788999999999974
No 174
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=91.92 E-value=0.76 Score=30.65 Aligned_cols=53 Identities=13% Similarity=0.134 Sum_probs=33.9
Q ss_pred EEEecCCCChhHHHHHHHHHHhHHHHHHcCCEEEEEeCCCHH-HHHHHHHHcCC-ceeEEec
Q 027245 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVE-QARTFSEQTKF-KGEVYAD 160 (226)
Q Consensus 101 VvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs~~~~~-~i~~f~~~~~~-pfpll~D 160 (226)
|+.|-..|||.|++-...|. +.++...-+..+... ..+.+.+.++. .+|++..
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~-------~~~i~~~~~di~~~~~~~~~l~~~~~~~~~P~~~~ 56 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLE-------SLGIEFEEIDILEDGELREELKELSGWPTVPQIFI 56 (72)
T ss_pred EEEEECCCCHHHHHHHHHHH-------HcCCcEEEEECCCCHHHHHHHHHHhCCCCcCEEEE
Confidence 34566899999997655554 445677777766543 44555666664 5675554
No 175
>PRK10329 glutaredoxin-like protein; Provisional
Probab=91.92 E-value=0.95 Score=32.88 Aligned_cols=55 Identities=16% Similarity=0.283 Sum_probs=36.3
Q ss_pred EEEecCCCChhHHHHHHHHHHhHHHHHHcCCEEEEEeCCCHHHHHHHHHHcCC-ceeEEecCC
Q 027245 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKF-KGEVYADPN 162 (226)
Q Consensus 101 VvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs~~~~~~i~~f~~~~~~-pfpll~Dp~ 162 (226)
|..|-..|||+|..--..| ++.|+..-.|..+...+..+..+..+. ..|++...+
T Consensus 3 v~lYt~~~Cp~C~~ak~~L-------~~~gI~~~~idi~~~~~~~~~~~~~g~~~vPvv~i~~ 58 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAM-------ESRGFDFEMINVDRVPEAAETLRAQGFRQLPVVIAGD 58 (81)
T ss_pred EEEEeCCCCHhHHHHHHHH-------HHCCCceEEEECCCCHHHHHHHHHcCCCCcCEEEECC
Confidence 4566789999999744433 568999888888755444444444453 678766554
No 176
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=91.70 E-value=0.37 Score=44.71 Aligned_cols=54 Identities=11% Similarity=0.091 Sum_probs=37.7
Q ss_pred CeEEEEEecCCCChhHHHHHHHHHHhHHHHHHcCCEEEEEeCCCHHHHHHHHHHcCCc
Q 027245 97 RKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFK 154 (226)
Q Consensus 97 ~~vVVvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs~~~~~~i~~f~~~~~~p 154 (226)
....++.|.+.||.+|.+.++.+.+....++. -+.+..|.++. ....++++++.
T Consensus 47 ~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~-~~~~~~vd~~~---~~~~~~~y~i~ 100 (383)
T KOG0191|consen 47 DSPWLVEFYAPWCGHCKKLAPTYKKLAKALKG-KVKIGAVDCDE---HKDLCEKYGIQ 100 (383)
T ss_pred CCceEEEEECCCCcchhhhchHHHHHHHHhcC-ceEEEEeCchh---hHHHHHhcCCc
Confidence 45677778899999999999999987777765 34444444444 44455566654
No 177
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=91.56 E-value=0.64 Score=46.22 Aligned_cols=117 Identities=12% Similarity=0.071 Sum_probs=75.4
Q ss_pred CCCccccCcCCCcEEec-CCCCeEeCCCcc--CCCeEEEEEecCCCChhHHHHHHHHHHhHH--------HHHHcC----
Q 027245 66 SVSEDTKNLLDTVKVYD-VNGNAIPISDLW--KDRKAVVAFARHFGCVLCRKRADYLAAKKD--------VMDASG---- 130 (226)
Q Consensus 66 ~~~~~~g~~apdf~L~D-~~G~~v~Lsdl~--~~~~vVVvF~R~~~Cp~C~~el~~L~~~~~--------~l~~~G---- 130 (226)
.....+|..+|++.+.. .+++++.|.+.+ .++..|++|-...-.+.....+..+.+... .+...+
T Consensus 460 ~~~~~~G~r~~~~~v~~~~d~~~~~l~~~~~~~g~~~l~~f~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~ 539 (634)
T PRK08294 460 ATGFPIGKRFHSAPVIRLADAKPVHLGHAATADGRWRIYAFADAADPAGPGSALDALCEFLAESPDSPLRRFTPSGADID 539 (634)
T ss_pred ccCCCCceeCCCCceeeccCCCchhHhhhcccCCCEEEEEEcCCCCcchhHHHHHHHHHHHhhCccchHhhcCCCCCCCC
Confidence 34578999999999987 578888877655 356778877766666677666666665441 122222
Q ss_pred --CEEEEEeCCCH---------HHHHHHHHHcCC-cee-EEecC--ChHHHHHcCCccc--cceeecch
Q 027245 131 --VALVLIGPGSV---------EQARTFSEQTKF-KGE-VYADP--NHSSYEALSFVSG--VLVTFTPK 182 (226)
Q Consensus 131 --v~lVaIs~~~~---------~~i~~f~~~~~~-pfp-ll~Dp--~~~ly~alGv~~~--~~~t~~p~ 182 (226)
+.++.|..... +....|...+++ .|. +++|. ....|+.||+.+. ....+-|.
T Consensus 540 ~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~g~~vvvRPD 608 (634)
T PRK08294 540 AVIDVRAIFQQPHRELDLEDVPALLLPRKGRFGLTDYEKVFCADLSGADIFDLRGIDRDRGAVVVVRPD 608 (634)
T ss_pred cEEEEEEEecCCCCccchhhCcHhhCCcccccCccchhheecCCCchhhHHHhhCCCCCceeEEEECCC
Confidence 56777776642 233445556666 664 78873 3579999999865 33334444
No 178
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=91.38 E-value=0.62 Score=36.80 Aligned_cols=50 Identities=22% Similarity=0.202 Sum_probs=36.3
Q ss_pred eEeCCCccCCCeEEEEEecCCCChhHHHHHHHHHHhHHHH-HHcCCEEEEEeC
Q 027245 87 AIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVM-DASGVALVLIGP 138 (226)
Q Consensus 87 ~v~Lsdl~~~~~vVVvF~R~~~Cp~C~~el~~L~~~~~~l-~~~Gv~lVaIs~ 138 (226)
.+.+++- +.++.|+.|..+.||+|.+..+.+.+..+++ ++..+.++.+..
T Consensus 4 ~~~~G~~--~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~ 54 (162)
T PF13462_consen 4 DPTIGNP--DAPITVTEFFDFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPV 54 (162)
T ss_dssp SEEES-T--TTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEES
T ss_pred CCeecCC--CCCeEEEEEECCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEc
Confidence 3445553 5588899999999999999999999888876 344566666654
No 179
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=91.38 E-value=0.28 Score=43.80 Aligned_cols=42 Identities=17% Similarity=0.207 Sum_probs=33.7
Q ss_pred CCeEEEEEecCCCChhHHHHHHHHHHhHHHHHHcCCEEEEEeCC
Q 027245 96 DRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPG 139 (226)
Q Consensus 96 ~~~vVVvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs~~ 139 (226)
+.+.|+|-|.+.||.+|+.-+|.+.++..++ .|...+=|..|
T Consensus 20 g~k~v~Vdfta~wCGPCk~IaP~Fs~lankY--p~aVFlkVdVd 61 (288)
T KOG0908|consen 20 GGKLVVVDFTASWCGPCKRIAPIFSDLANKY--PGAVFLKVDVD 61 (288)
T ss_pred CceEEEEEEEecccchHHhhhhHHHHhhhhC--cccEEEEEeHH
Confidence 4589999999999999999999999987776 45555555443
No 180
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=91.21 E-value=1 Score=31.25 Aligned_cols=50 Identities=20% Similarity=0.282 Sum_probs=30.8
Q ss_pred EEEecCCCChhHHHHHHHHHHhHHHHHHcCCEEEEEeCCCHHHHHHHHHHcCC-ceeE
Q 027245 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKF-KGEV 157 (226)
Q Consensus 101 VvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs~~~~~~i~~f~~~~~~-pfpl 157 (226)
|+.|-..|||+|.+-...|. +.|+....+..+.....+.+.+..+. .+|.
T Consensus 3 v~lys~~~Cp~C~~ak~~L~-------~~~i~~~~~~v~~~~~~~~~~~~~g~~~vP~ 53 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQ-------ENGISYEEIPLGKDITGRSLRAVTGAMTVPQ 53 (72)
T ss_pred EEEEECCCCHHHHHHHHHHH-------HcCCCcEEEECCCChhHHHHHHHhCCCCcCe
Confidence 34566799999998655444 46777666666654444445444443 5663
No 181
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=91.01 E-value=0.34 Score=37.63 Aligned_cols=38 Identities=18% Similarity=0.250 Sum_probs=28.0
Q ss_pred CCeEEEEEecCCCChhHHHHHHHHHHhHHHHHHcCCEEEE
Q 027245 96 DRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVL 135 (226)
Q Consensus 96 ~~~vVVvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~lVa 135 (226)
+.++.|+.|..++||+|++.-+.+.+...+.. .+.++.
T Consensus 4 ~a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~--~~~~~~ 41 (154)
T cd03023 4 NGDVTIVEFFDYNCGYCKKLAPELEKLLKEDP--DVRVVF 41 (154)
T ss_pred CCCEEEEEEECCCChhHHHhhHHHHHHHHHCC--CceEEE
Confidence 35677888889999999999988887665443 244443
No 182
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=90.68 E-value=0.68 Score=33.80 Aligned_cols=58 Identities=10% Similarity=0.076 Sum_probs=35.0
Q ss_pred EEEecCCCChhHHHHHHHHHHhHHHHHHcCCEEEEEeCC-CHHHHHHHHHHcC---CceeE-Eec
Q 027245 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPG-SVEQARTFSEQTK---FKGEV-YAD 160 (226)
Q Consensus 101 VvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs~~-~~~~i~~f~~~~~---~pfpl-l~D 160 (226)
|+.|-..|||+|.+-...|.+...+. .++...-|..+ +....+++.+.++ ...|. +.|
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~--~~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~ifi~ 64 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIER--ADFEFRYIDIHAEGISKADLEKTVGKPVETVPQIFVD 64 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCccc--CCCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEEEC
Confidence 55677889999998777766654332 24555555554 2223344666666 46774 444
No 183
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=90.57 E-value=0.55 Score=35.46 Aligned_cols=58 Identities=12% Similarity=0.144 Sum_probs=30.4
Q ss_pred cCCCeEEEEEecCCCChhHHHHHHHHHHhHHHHHHcCCEEEEEeCCCH----HHHHHHHHHcCC-cee-EEec
Q 027245 94 WKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSV----EQARTFSEQTKF-KGE-VYAD 160 (226)
Q Consensus 94 ~~~~~vVVvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs~~~~----~~i~~f~~~~~~-pfp-ll~D 160 (226)
++..++ ++ |-..|||+|.+--.. |++.|+..-.|..+.. +..+++.+.++. ++| |+.|
T Consensus 5 i~~~~V-vv-ysk~~Cp~C~~ak~~-------L~~~~i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~Vfi~ 68 (99)
T TIGR02189 5 VSEKAV-VI-FSRSSCCMCHVVKRL-------LLTLGVNPAVHEIDKEPAGKDIENALSRLGCSPAVPAVFVG 68 (99)
T ss_pred hccCCE-EE-EECCCCHHHHHHHHH-------HHHcCCCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeEEEC
Confidence 334453 33 346999999964443 3445665445555432 223344444454 467 4544
No 184
>PHA03050 glutaredoxin; Provisional
Probab=90.49 E-value=1.2 Score=34.34 Aligned_cols=56 Identities=21% Similarity=0.161 Sum_probs=27.3
Q ss_pred EEEecCCCChhHHHHHHHHHHhHHHHHHcCCEEEEEeCC--CHHHHHHHHHHcCC-ceeEE
Q 027245 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPG--SVEQARTFSEQTKF-KGEVY 158 (226)
Q Consensus 101 VvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs~~--~~~~i~~f~~~~~~-pfpll 158 (226)
|+.|-..|||+|.+--..|.+..- +...+.++=|... ..+..+.+.+.++. +.|.+
T Consensus 15 V~vys~~~CPyC~~ak~~L~~~~i--~~~~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~I 73 (108)
T PHA03050 15 VTIFVKFTCPFCRNALDILNKFSF--KRGAYEIVDIKEFKPENELRDYFEQITGGRTVPRI 73 (108)
T ss_pred EEEEECCCChHHHHHHHHHHHcCC--CcCCcEEEECCCCCCCHHHHHHHHHHcCCCCcCEE
Confidence 344678999999865444433211 0012334444431 23344455555554 46633
No 185
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=90.40 E-value=1.3 Score=31.06 Aligned_cols=53 Identities=15% Similarity=0.101 Sum_probs=30.2
Q ss_pred EEEecCCCChhHHHHHHHHHHhHHHHHHcCCEEEEEeCCCH-HHHH-HHHHHcCC-ceeEE
Q 027245 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSV-EQAR-TFSEQTKF-KGEVY 158 (226)
Q Consensus 101 VvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs~~~~-~~i~-~f~~~~~~-pfpll 158 (226)
|++|-..|||.|.+-...|.+... ....+=|..++. +..+ .+.+.++. .+|.+
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~-----~~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v 57 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGV-----KPAVVELDQHEDGSEIQDYLQELTGQRTVPNV 57 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCC-----CcEEEEEeCCCChHHHHHHHHHHhCCCCCCeE
Confidence 456678999999986666655433 334555555443 3333 34444454 46643
No 186
>PRK10824 glutaredoxin-4; Provisional
Probab=90.21 E-value=1.2 Score=34.88 Aligned_cols=61 Identities=8% Similarity=0.197 Sum_probs=35.1
Q ss_pred cCCCeEEEEEecC----CCChhHHHHHHHHHHhHHHHHHcCCEEEEEeCC-CHHHHHHHHHHcCCc-ee-EEecCC
Q 027245 94 WKDRKAVVAFARH----FGCVLCRKRADYLAAKKDVMDASGVALVLIGPG-SVEQARTFSEQTKFK-GE-VYADPN 162 (226)
Q Consensus 94 ~~~~~vVVvF~R~----~~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs~~-~~~~i~~f~~~~~~p-fp-ll~Dp~ 162 (226)
.+.+ .||+|.-+ .+||+|.+-..-|.+ .|+..-.|..+ +.+..+.+.+..+++ +| |+.|-+
T Consensus 12 I~~~-~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~-------~~i~~~~idi~~d~~~~~~l~~~sg~~TVPQIFI~G~ 79 (115)
T PRK10824 12 IAEN-PILLYMKGSPKLPSCGFSAQAVQALSA-------CGERFAYVDILQNPDIRAELPKYANWPTFPQLWVDGE 79 (115)
T ss_pred HhcC-CEEEEECCCCCCCCCchHHHHHHHHHH-------cCCCceEEEecCCHHHHHHHHHHhCCCCCCeEEECCE
Confidence 3344 46667776 599999976555544 34443334443 334444555566764 77 777643
No 187
>PRK10638 glutaredoxin 3; Provisional
Probab=90.17 E-value=1.3 Score=31.70 Aligned_cols=52 Identities=13% Similarity=0.183 Sum_probs=33.3
Q ss_pred EEEecCCCChhHHHHHHHHHHhHHHHHHcCCEEEEEeCCCH-HHHHHHHHHcCCc-eeEEe
Q 027245 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSV-EQARTFSEQTKFK-GEVYA 159 (226)
Q Consensus 101 VvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs~~~~-~~i~~f~~~~~~p-fpll~ 159 (226)
|..|-..+||+|++-...|. +.|+....+..+.. +..+.+.+.++.. +|.+.
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~-------~~gi~y~~~dv~~~~~~~~~l~~~~g~~~vP~i~ 57 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLN-------SKGVSFQEIPIDGDAAKREEMIKRSGRTTVPQIF 57 (83)
T ss_pred EEEEECCCChhHHHHHHHHH-------HcCCCcEEEECCCCHHHHHHHHHHhCCCCcCEEE
Confidence 45667899999997555554 45666666666543 3445666666653 67543
No 188
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=90.03 E-value=1 Score=35.21 Aligned_cols=77 Identities=10% Similarity=0.163 Sum_probs=57.3
Q ss_pred CCCccCCCeEEEEEecCCCChhHHHHHHHHHHhHHHHHHcCCEEEEEeCCCH---------HHHHHHHHHcCCc---ee-
Q 027245 90 ISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSV---------EQARTFSEQTKFK---GE- 156 (226)
Q Consensus 90 Lsdl~~~~~vVVvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs~~~~---------~~i~~f~~~~~~p---fp- 156 (226)
|+++.-.+++||||-+...-+.=++++..|.+....|.+..+.++.|..+.. +.+....++++++ |.
T Consensus 3 L~~~~w~~R~lvv~aps~~d~~~~~q~~~L~~~~~~l~eRdi~v~~i~~~~~~~~~~~~~~~~~~~lr~~l~~~~~~f~~ 82 (118)
T PF13778_consen 3 LDQFRWKNRLLVVFAPSADDPRYQQQLEELQNNRCGLDERDIVVIVITGDGARSPGKPLSPEDIQALRKRLRIPPGGFTV 82 (118)
T ss_pred hhHhcCcCceEEEECCCCCCHHHHHHHHHHHhhhhccccCceEEEEEeCCccccccCcCCHHHHHHHHHHhCCCCCceEE
Confidence 4455445689999999999999999999999999999999999888855432 3445555665543 44
Q ss_pred EEecCChHHH
Q 027245 157 VYADPNHSSY 166 (226)
Q Consensus 157 ll~Dp~~~ly 166 (226)
|+.+.|+.+-
T Consensus 83 vLiGKDG~vK 92 (118)
T PF13778_consen 83 VLIGKDGGVK 92 (118)
T ss_pred EEEeCCCcEE
Confidence 6777777643
No 189
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=88.65 E-value=0.54 Score=45.57 Aligned_cols=34 Identities=15% Similarity=0.112 Sum_probs=29.4
Q ss_pred CCeEEEEEecCCCChhHHHHHHHHHHhHHHHHHc
Q 027245 96 DRKAVVAFARHFGCVLCRKRADYLAAKKDVMDAS 129 (226)
Q Consensus 96 ~~~vVVvF~R~~~Cp~C~~el~~L~~~~~~l~~~ 129 (226)
.++-|+|-|.+.||++|..-.|.+.++.+.+++.
T Consensus 383 e~KdVLvEfyAPWCgHCk~laP~~eeLAe~~~~~ 416 (493)
T KOG0190|consen 383 EGKDVLVEFYAPWCGHCKALAPIYEELAEKYKDD 416 (493)
T ss_pred cccceEEEEcCcccchhhhhhhHHHHHHHHhcCC
Confidence 3567888888999999999999999999988773
No 190
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.22 E-value=1.3 Score=35.33 Aligned_cols=35 Identities=14% Similarity=0.120 Sum_probs=28.0
Q ss_pred CCChhHHHHHHHHHHhHHHHHHcCCEEEEEeCCCHH
Q 027245 107 FGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVE 142 (226)
Q Consensus 107 ~~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs~~~~~ 142 (226)
+|||.|..-.|-+.+..... -.++.+|.|..|+.+
T Consensus 43 SWCPdCV~AEPvi~~alk~a-p~~~~~v~v~VG~rp 77 (128)
T KOG3425|consen 43 SWCPDCVAAEPVINEALKHA-PEDVHFVHVYVGNRP 77 (128)
T ss_pred cCCchHHHhhHHHHHHHHhC-CCceEEEEEEecCCC
Confidence 59999999999888876633 467889999888753
No 191
>TIGR03759 conj_TIGR03759 integrating conjugative element protein, PFL_4693 family. Members of this protein family, such as model protein PFL_4693 from Pseudomonas fluorescens Pf-5, belong to extended genomic regions that appear to be spread by conjugative transfer. Most members have a predicted N-terminal signal sequence. The function is unknown.
Probab=88.02 E-value=2 Score=37.01 Aligned_cols=70 Identities=21% Similarity=0.434 Sum_probs=51.7
Q ss_pred CeEEEEEecCCCChhHHHHHHHHHHhHHHHHHcCCEEEEEe-CCCHHHHHHHHHHcCCcee------EEecCChHHHHHc
Q 027245 97 RKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIG-PGSVEQARTFSEQTKFKGE------VYADPNHSSYEAL 169 (226)
Q Consensus 97 ~~vVVvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs-~~~~~~i~~f~~~~~~pfp------ll~Dp~~~ly~al 169 (226)
...+.+|+. ..|+.|...+..+.. ....+.|..|+ .++.+.++.|+.++++|-. |=...|.--+..|
T Consensus 109 ~~rlalFvk-d~C~~C~~~~~~l~a-----~~~~~Diylvgs~~dD~~Ir~WA~~~~Idp~~V~~~~ITLNHD~G~w~~l 182 (200)
T TIGR03759 109 GGRLALFVK-DDCVACDARVQRLLA-----DNAPLDLYLVGSQGDDERIRQWANRHQIDPAKVRSRQITLNHDNGRWLQL 182 (200)
T ss_pred CCeEEEEeC-CCChHHHHHHHHHhc-----CCCceeEEEecCCCCHHHHHHHHHHcCCCHHHeecCeeEEecCcchHHHc
Confidence 456777887 899999998888854 35577888888 4667899999999999854 3334455556666
Q ss_pred CCc
Q 027245 170 SFV 172 (226)
Q Consensus 170 Gv~ 172 (226)
|+.
T Consensus 183 g~~ 185 (200)
T TIGR03759 183 GLQ 185 (200)
T ss_pred cCC
Confidence 663
No 192
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=87.87 E-value=0.9 Score=34.76 Aligned_cols=63 Identities=13% Similarity=0.206 Sum_probs=45.8
Q ss_pred EEEecCCCChhHHHHHHHHHHhHHHHHHcCCEEEEEeC--C--CHHHHHHHHHHcCCceeEEecCChHHHHHcCCc
Q 027245 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGP--G--SVEQARTFSEQTKFKGEVYADPNHSSYEALSFV 172 (226)
Q Consensus 101 VvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs~--~--~~~~i~~f~~~~~~pfpll~Dp~~~ly~alGv~ 172 (226)
|.+|...+|+.|++-... |++.|+..-.|.. + +.++++.+.++.+ ..-+.......|+.+++.
T Consensus 1 i~iy~~~~C~~crka~~~-------L~~~~i~~~~~di~~~p~s~~eL~~~l~~~g--~~~li~~~~~~yk~l~l~ 67 (105)
T cd03035 1 ITLYGIKNCDTVKKARKW-------LEARGVAYTFHDYRKDGLDAATLERWLAKVG--WETLLNKRGTTWRKLDDA 67 (105)
T ss_pred CEEEeCCCCHHHHHHHHH-------HHHcCCCeEEEecccCCCCHHHHHHHHHHhC--hHHHHccCchHHHhCChh
Confidence 357889999999985544 4455666555553 2 3589999999887 355556888999999886
No 193
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=87.80 E-value=2.1 Score=31.03 Aligned_cols=54 Identities=20% Similarity=0.261 Sum_probs=33.4
Q ss_pred EEecCCCChhHHHHHHHHHHhHHHHHHcCCEEEEEeCC--CHHHHHHHHHHcC--CceeEEecCC
Q 027245 102 AFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPG--SVEQARTFSEQTK--FKGEVYADPN 162 (226)
Q Consensus 102 vF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs~~--~~~~i~~f~~~~~--~pfpll~Dp~ 162 (226)
..|-..+||+|.+--.. |++.|+...-|..+ +.+..+.++++.. -++|.+...+
T Consensus 4 ~iyt~~~CPyC~~ak~~-------L~~~g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i~~ 61 (80)
T COG0695 4 TIYTKPGCPYCKRAKRL-------LDRKGVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFIGG 61 (80)
T ss_pred EEEECCCCchHHHHHHH-------HHHcCCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEECC
Confidence 44556779999964333 34677665554444 4447777877763 5688544443
No 194
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=87.48 E-value=3.9 Score=28.38 Aligned_cols=52 Identities=21% Similarity=0.246 Sum_probs=32.7
Q ss_pred EEEecCCCChhHHHHHHHHHHhHHHHHHcCCEEEEEeCCC-HHHHHHHHHHcC-CceeEEe
Q 027245 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGS-VEQARTFSEQTK-FKGEVYA 159 (226)
Q Consensus 101 VvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs~~~-~~~i~~f~~~~~-~pfpll~ 159 (226)
|..|-..+||.|++-...| ++.|+....+..+. ++..+++.+.++ ..+|.+.
T Consensus 3 v~ly~~~~C~~C~ka~~~L-------~~~gi~~~~~di~~~~~~~~el~~~~g~~~vP~v~ 56 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFL-------REKGLPYVEINIDIFPERKAELEERTGSSVVPQIF 56 (73)
T ss_pred EEEEecCCChhHHHHHHHH-------HHCCCceEEEECCCCHHHHHHHHHHhCCCCcCEEE
Confidence 3456679999999755444 45777777777765 344455555554 3466443
No 195
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=87.09 E-value=0.77 Score=32.39 Aligned_cols=50 Identities=14% Similarity=0.179 Sum_probs=30.6
Q ss_pred EEEecCCCChhHHHHHHHHHHhHHHHHHcCCEEEEEeCCC-HHHHHHHHHHcC-CceeE
Q 027245 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGS-VEQARTFSEQTK-FKGEV 157 (226)
Q Consensus 101 VvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs~~~-~~~i~~f~~~~~-~pfpl 157 (226)
|..|...+||.|.+-...|. +.|+..--+..+. ++..+++.+.++ ..+|.
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~-------~~~i~~~~~di~~~~~~~~~~~~~~g~~~vP~ 52 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLS-------SKGVTFTEIRVDGDPALRDEMMQRSGRRTVPQ 52 (79)
T ss_pred CEEEecCCChhHHHHHHHHH-------HcCCCcEEEEecCCHHHHHHHHHHhCCCCcCE
Confidence 35677899999997555554 4555555555543 345566666554 34563
No 196
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=87.07 E-value=2.4 Score=33.05 Aligned_cols=91 Identities=5% Similarity=0.020 Sum_probs=49.0
Q ss_pred CCeEEEEEecCC----CChhHHHHHHHHHHhHHHHHHcCCEEEEEeCCCHHH--HHHHHHHcCCceeEEecCChHHHHHc
Q 027245 96 DRKAVVAFARHF----GCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQ--ARTFSEQTKFKGEVYADPNHSSYEAL 169 (226)
Q Consensus 96 ~~~vVVvF~R~~----~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs~~~~~~--i~~f~~~~~~pfpll~Dp~~~ly~al 169 (226)
+.|.++|++... ||.+|++-+.. .+..+-+ +.+..+++....+.+. +....+-..+|+-++.++... .+
T Consensus 16 e~K~llVylhs~~~~~~~~fc~~~l~~-~~v~~~l-n~~fv~w~~dv~~~eg~~la~~l~~~~~P~~~~l~~~~~---~~ 90 (116)
T cd02991 16 ELRFLLVYLHGDDHQDTDEFCRNTLCA-PEVIEYI-NTRMLFWACSVAKPEGYRVSQALRERTYPFLAMIMLKDN---RM 90 (116)
T ss_pred hCCEEEEEEeCCCCccHHHHHHHHcCC-HHHHHHH-HcCEEEEEEecCChHHHHHHHHhCCCCCCEEEEEEecCC---ce
Confidence 457788888887 78888654321 1122223 4567777777777653 333334446777777765543 12
Q ss_pred CCccccceeecchhhHHHHHHH
Q 027245 170 SFVSGVLVTFTPKAGLKIIQSY 191 (226)
Q Consensus 170 Gv~~~~~~t~~p~a~~~~~~~~ 191 (226)
.+........+|..+...++.+
T Consensus 91 ~vv~~i~G~~~~~~ll~~L~~~ 112 (116)
T cd02991 91 TIVGRLEGLIQPEDLINRLTFI 112 (116)
T ss_pred EEEEEEeCCCCHHHHHHHHHHH
Confidence 2222233333555555554443
No 197
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=86.76 E-value=1.9 Score=31.09 Aligned_cols=56 Identities=14% Similarity=0.185 Sum_probs=40.2
Q ss_pred EEEecCCCChhHHHHHHHHHHhHHHHHHcCCEEEEEeCCCHHHHHHHHHHcCCceeEEecCC
Q 027245 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKGEVYADPN 162 (226)
Q Consensus 101 VvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs~~~~~~i~~f~~~~~~pfpll~Dp~ 162 (226)
|++|-..+|+.|.+-...|.+... +.++.+..|..++.+. +.+++++..|++.-.+
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~---~~~~~l~~vDI~~d~~---l~~~Y~~~IPVl~~~~ 57 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAA---EFPFELEEVDIDEDPE---LFEKYGYRIPVLHIDG 57 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCT---TSTCEEEEEETTTTHH---HHHHSCTSTSEEEETT
T ss_pred EEEEcCCCCChHHHHHHHHHHHHh---hcCceEEEEECCCCHH---HHHHhcCCCCEEEEcC
Confidence 678899999999976666665433 4568888898886544 6668888888766544
No 198
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=86.60 E-value=1.1 Score=41.46 Aligned_cols=57 Identities=14% Similarity=0.050 Sum_probs=42.0
Q ss_pred eEEEEEecCCCChhHHHHHHHHHHhHHHHH-HcCCEEEEEeCCCHHHHHHHHHHcCCc
Q 027245 98 KAVVAFARHFGCVLCRKRADYLAAKKDVMD-ASGVALVLIGPGSVEQARTFSEQTKFK 154 (226)
Q Consensus 98 ~vVVvF~R~~~Cp~C~~el~~L~~~~~~l~-~~Gv~lVaIs~~~~~~i~~f~~~~~~p 154 (226)
...++.|-+.||++|+..++.+.+....++ ..++.+..+.++....+.....-.++|
T Consensus 163 ~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~~~~~~~~~~~~v~~~P 220 (383)
T KOG0191|consen 163 ADWLVEFYAPWCGHCKKLAPEWEKLAKLLKSKENVELGKIDATVHKSLASRLEVRGYP 220 (383)
T ss_pred cceEEEEeccccHHhhhcChHHHHHHHHhccCcceEEEeeccchHHHHhhhhcccCCc
Confidence 345555689999999999999999988887 478888888888444444444444444
No 199
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=85.40 E-value=0.86 Score=44.87 Aligned_cols=75 Identities=13% Similarity=0.161 Sum_probs=50.2
Q ss_pred CCCccCCCe--EEEEEecCCCChhHHHHHHHH-HHhHHHHHHcCCEEEEEeCCC-HHHHHHHHHHcC---CceeEEecCC
Q 027245 90 ISDLWKDRK--AVVAFARHFGCVLCRKRADYL-AAKKDVMDASGVALVLIGPGS-VEQARTFSEQTK---FKGEVYADPN 162 (226)
Q Consensus 90 Lsdl~~~~~--vVVvF~R~~~Cp~C~~el~~L-~~~~~~l~~~Gv~lVaIs~~~-~~~i~~f~~~~~---~pfpll~Dp~ 162 (226)
|.+++++.+ .|++.|.+.||--|++--+.. ++....++..|+.++=+.... ..++.++.++++ .|.-++.|++
T Consensus 465 L~~~la~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~~~vlLqaDvT~~~p~~~~lLk~~~~~G~P~~~ff~~~ 544 (569)
T COG4232 465 LDQALAEAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQDVVLLQADVTANDPAITALLKRLGVFGVPTYLFFGPQ 544 (569)
T ss_pred HHHHHHhCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcCCeEEEEeeecCCCHHHHHHHHHcCCCCCCEEEEECCC
Confidence 334444444 889999999999999744433 355666677788877665532 246667777765 5666888877
Q ss_pred hH
Q 027245 163 HS 164 (226)
Q Consensus 163 ~~ 164 (226)
+.
T Consensus 545 g~ 546 (569)
T COG4232 545 GS 546 (569)
T ss_pred CC
Confidence 65
No 200
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=82.55 E-value=3 Score=35.16 Aligned_cols=41 Identities=12% Similarity=0.093 Sum_probs=37.0
Q ss_pred HHHHHHhHHHHHHcCCEEEEEeCCCHHHHHHHHHHcCCcee
Q 027245 116 ADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKGE 156 (226)
Q Consensus 116 l~~L~~~~~~l~~~Gv~lVaIs~~~~~~i~~f~~~~~~pfp 156 (226)
.+++.+-.++++++|+.++++|..+...++.|++..+++|-
T Consensus 48 tpe~~~W~~e~k~~gi~v~vvSNn~e~RV~~~~~~l~v~fi 88 (175)
T COG2179 48 TPELRAWLAELKEAGIKVVVVSNNKESRVARAAEKLGVPFI 88 (175)
T ss_pred CHHHHHHHHHHHhcCCEEEEEeCCCHHHHHhhhhhcCCcee
Confidence 56788888899999999999999999999999999998874
No 201
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=81.73 E-value=2.2 Score=34.21 Aligned_cols=38 Identities=21% Similarity=0.229 Sum_probs=29.3
Q ss_pred CCeEEEEEecCCCChhHHHHHHHHHHhHHHHHHcCCEEE
Q 027245 96 DRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALV 134 (226)
Q Consensus 96 ~~~vVVvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~lV 134 (226)
+.++.|+.|.-+.||+|....+.+.+..+++ ..++.+.
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~-~~~v~~~ 51 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKL-PKDVKFE 51 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHHHHHHhC-CCCceEE
Confidence 3467778888899999999999998887766 3355544
No 202
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=81.23 E-value=2.6 Score=35.17 Aligned_cols=25 Identities=32% Similarity=0.389 Sum_probs=20.7
Q ss_pred CeEEEEEecCCCChhHHHHHHHHHH
Q 027245 97 RKAVVAFARHFGCVLCRKRADYLAA 121 (226)
Q Consensus 97 ~~vVVvF~R~~~Cp~C~~el~~L~~ 121 (226)
.+..|+.|-...||+|++..+.+.+
T Consensus 77 ~~~~i~~f~D~~Cp~C~~~~~~l~~ 101 (197)
T cd03020 77 GKRVVYVFTDPDCPYCRKLEKELKP 101 (197)
T ss_pred CCEEEEEEECCCCccHHHHHHHHhh
Confidence 4667777778999999998888876
No 203
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=79.90 E-value=3.9 Score=35.58 Aligned_cols=37 Identities=19% Similarity=0.412 Sum_probs=27.1
Q ss_pred CCeEEEEEecCCCChhHHHHHHHHHHhHHHHHHcCCEEEEE
Q 027245 96 DRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLI 136 (226)
Q Consensus 96 ~~~vVVvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~lVaI 136 (226)
+++..|+.|--..||+|++..++|.+. .+.|+.|..+
T Consensus 106 ~~k~~I~vFtDp~CpyCkkl~~~l~~~----~~~~v~v~~~ 142 (232)
T PRK10877 106 QEKHVITVFTDITCGYCHKLHEQMKDY----NALGITVRYL 142 (232)
T ss_pred CCCEEEEEEECCCChHHHHHHHHHHHH----hcCCeEEEEE
Confidence 346677778899999999988777654 3467777554
No 204
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=79.71 E-value=3.3 Score=31.81 Aligned_cols=66 Identities=9% Similarity=0.226 Sum_probs=50.4
Q ss_pred EEEecCCCChhHHHHHHHHHHhHHHHHHcCCEEEEEeC--C--CHHHHHHHHHHcCCceeEEecCChHHHHHcCCcc
Q 027245 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGP--G--SVEQARTFSEQTKFKGEVYADPNHSSYEALSFVS 173 (226)
Q Consensus 101 VvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs~--~--~~~~i~~f~~~~~~pfpll~Dp~~~ly~alGv~~ 173 (226)
|.+|-...|.-|++-... |++.|+.+..+.. + +.++++.+.+..+.+..-+.......|+.+++..
T Consensus 1 i~iy~~~~C~t~rkA~~~-------L~~~~i~~~~~di~~~~~t~~el~~~l~~~~~~~~~lin~~~~~y~~l~~~~ 70 (112)
T cd03034 1 ITIYHNPRCSKSRNALAL-------LEEAGIEPEIVEYLKTPPTAAELRELLAKLGISPRDLLRTKEAPYKELGLAD 70 (112)
T ss_pred CEEEECCCCHHHHHHHHH-------HHHCCCCeEEEecccCCcCHHHHHHHHHHcCCCHHHHHhcCCchHHHcCCCc
Confidence 357788999999985444 4555666665553 2 3579999999999888777788999999998874
No 205
>PRK10026 arsenate reductase; Provisional
Probab=79.55 E-value=4.3 Score=32.97 Aligned_cols=66 Identities=14% Similarity=0.223 Sum_probs=49.9
Q ss_pred EEEecCCCChhHHHHHHHHHHhHHHHHHcCCEEEEEe--CC--CHHHHHHHHHHcCCceeEEecCChHHHHHcCCcc
Q 027245 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIG--PG--SVEQARTFSEQTKFKGEVYADPNHSSYEALSFVS 173 (226)
Q Consensus 101 VvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs--~~--~~~~i~~f~~~~~~pfpll~Dp~~~ly~alGv~~ 173 (226)
+.+|....|.-|++-...|.+ .|+.+..+. .+ +.++++.|.+..+++..-+.......|+.+++..
T Consensus 4 i~iY~~p~Cst~RKA~~wL~~-------~gi~~~~~d~~~~ppt~~eL~~~l~~~g~~~~~lint~~~~yr~L~~~~ 73 (141)
T PRK10026 4 ITIYHNPACGTSRNTLEMIRN-------SGTEPTIIHYLETPPTRDELVKLIADMGISVRALLRKNVEPYEELGLAE 73 (141)
T ss_pred EEEEeCCCCHHHHHHHHHHHH-------CCCCcEEEeeeCCCcCHHHHHHHHHhCCCCHHHHHHcCCchHHHcCCCc
Confidence 568889999999987666554 455554444 34 3479999999999876666678889999999864
No 206
>TIGR00995 3a0901s06TIC22 chloroplast protein import component, Tic22 family. Two families of proteins are involved in the chloroplast envelope import appartus.They are the three proteins of the outer membrane (TOC) and four proteins in the inner membrane (TIC). This family is specific for the Tic22 protein.
Probab=78.97 E-value=6.6 Score=35.34 Aligned_cols=85 Identities=14% Similarity=0.045 Sum_probs=55.1
Q ss_pred cccCcCCCcEEecCCCCeEeCCCccCCCeEEEEEecCCCChhHHHHHHHHHHhHHHHHHcCCEEEEEeCCCHHHHHHHHH
Q 027245 70 DTKNLLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSE 149 (226)
Q Consensus 70 ~~g~~apdf~L~D~~G~~v~Lsdl~~~~~vVVvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs~~~~~~i~~f~~ 149 (226)
+..+.+|-|++.|.+|+.+-.+.- .++++.-+|+-.- -.....+.+|++..+++ ..+++|+.|+-|..-+++
T Consensus 77 ekL~~VPVFtItn~~G~pvl~s~~-~~~~~~gvf~s~q--edA~afL~~lk~~~p~l-~~~~kV~pvsL~~vYkl~---- 148 (270)
T TIGR00995 77 KILAGTSVFTVSNAQNEFVLASDN-DGEKSIGLLCFRQ--EDAEAFLAQLRKRKPEV-GSQAKVVPITLDQVYKLK---- 148 (270)
T ss_pred HHhcCCceEEEEcCCCCeEEEECC-CCCceEEEEECCH--HHHHHHHHHHHhhCccc-cCCceEEEEEHHHHHHHh----
Confidence 455678999999999999888753 2444444443211 12344455555545555 368999999988775552
Q ss_pred HcCCceeEEecCC
Q 027245 150 QTKFKGEVYADPN 162 (226)
Q Consensus 150 ~~~~pfpll~Dp~ 162 (226)
+.++.|.++.|+.
T Consensus 149 ~e~l~F~fiP~~~ 161 (270)
T TIGR00995 149 VEGIGFRFLPDPA 161 (270)
T ss_pred hcCccEEEeCCHH
Confidence 2358899998874
No 207
>PRK06184 hypothetical protein; Provisional
Probab=78.24 E-value=7.1 Score=37.25 Aligned_cols=87 Identities=16% Similarity=0.295 Sum_probs=59.1
Q ss_pred CccccCcCCCcEEecCCCCeEeCCCccCC-CeEEEEEecCCCChhHHHHHHHHHHhHHHHHHcCCEEEEEeCCCHHHHHH
Q 027245 68 SEDTKNLLDTVKVYDVNGNAIPISDLWKD-RKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQART 146 (226)
Q Consensus 68 ~~~~g~~apdf~L~D~~G~~v~Lsdl~~~-~~vVVvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs~~~~~~i~~ 146 (226)
...+|..+|++.|.+.+|+.+++-|++.+ +.+||.|--..+ ...+..|+.++.|+...
T Consensus 385 ~~~~G~r~p~~~~~~~~~~~~~l~d~~~~~~~~ll~~~~~~~---------------~~~~~~~~~~~~~~~~~------ 443 (502)
T PRK06184 385 GLRAGDRAPDAPLLGAAGQPTRLFDLFRGPHWTLLAFGAGAA---------------AILARRGLRIHRVGDAA------ 443 (502)
T ss_pred CCCCcCCCCCchhccCCCceeeHHHhhCCCcEEEEEecCCch---------------hhhhhcCceEEEecccC------
Confidence 35679999999998878888888888864 566665422111 01235578888776542
Q ss_pred HHHHcCCceeEEecCChHHHHHcCCccccceeecch
Q 027245 147 FSEQTKFKGEVYADPNHSSYEALSFVSGVLVTFTPK 182 (226)
Q Consensus 147 f~~~~~~pfpll~Dp~~~ly~alGv~~~~~~t~~p~ 182 (226)
....+.|+++.+.+.|++...-...+-|.
T Consensus 444 -------~~~~~~d~~g~~~~~~~~~~~~~~lvRPD 472 (502)
T PRK06184 444 -------EGGDLVDDAGHFRDAYGLTGGTLVLVRPD 472 (502)
T ss_pred -------CCCceeCCCccHHHHhcCCCCcEEEECCC
Confidence 23357899999999999977655544443
No 208
>PTZ00062 glutaredoxin; Provisional
Probab=78.17 E-value=2.9 Score=35.94 Aligned_cols=64 Identities=16% Similarity=0.216 Sum_probs=36.4
Q ss_pred CCCccCCCeEEEEEecC----CCChhHHHHHHHHHHhHHHHHHcCCEEEEEeCCCHHHH-HHHHHHcCC-cee-EEecC
Q 027245 90 ISDLWKDRKAVVAFARH----FGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQA-RTFSEQTKF-KGE-VYADP 161 (226)
Q Consensus 90 Lsdl~~~~~vVVvF~R~----~~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs~~~~~~i-~~f~~~~~~-pfp-ll~Dp 161 (226)
+.++...+| |++|-.+ .+||+|++-...|. +.|+....+..+..+.+ +...+..++ ++| |+.+-
T Consensus 106 v~~li~~~~-Vvvf~Kg~~~~p~C~~C~~~k~~L~-------~~~i~y~~~DI~~d~~~~~~l~~~sg~~TvPqVfI~G 176 (204)
T PTZ00062 106 IERLIRNHK-ILLFMKGSKTFPFCRFSNAVVNMLN-------SSGVKYETYNIFEDPDLREELKVYSNWPTYPQLYVNG 176 (204)
T ss_pred HHHHHhcCC-EEEEEccCCCCCCChhHHHHHHHHH-------HcCCCEEEEEcCCCHHHHHHHHHHhCCCCCCeEEECC
Confidence 334444444 6667665 59999997555554 44666555555443344 344445565 366 66653
No 209
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=78.04 E-value=6.6 Score=37.89 Aligned_cols=99 Identities=16% Similarity=0.164 Sum_probs=63.8
Q ss_pred ccccCcCCCcEEecCCCCeEeCCCccCCCeEEEEEecCCCChhHHHHHHHHHHhHHHHHHcCCEEEEEeCCCHHHHHHHH
Q 027245 69 EDTKNLLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFS 148 (226)
Q Consensus 69 ~~~g~~apdf~L~D~~G~~v~Lsdl~~~~~vVVvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs~~~~~~i~~f~ 148 (226)
..+|+.+|+..+.+.+|....+.++...+.++|.| ++..- ..+. .+..+.++..++.+|.+..+.....
T Consensus 411 ~~~G~~~p~~~~~~~~~~~~~~d~~~~~~~~ll~~----~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~---- 479 (538)
T PRK06183 411 SPVGTLFPQPRVELGGGDRGLLDDVLGPGFAVLGW----GCDPL-AGLS--DEQRARWRALGARFVQVVPAVQAHT---- 479 (538)
T ss_pred CCcccCcCCCeeEcCCCCcccchhccCCceEEEEe----cCCch-hcCC--HHHHHHHHHcCCeEEEEeccccccc----
Confidence 46799999999988777666677777666777755 22211 1111 1122336678999998876643211
Q ss_pred HHcCCceeEEecCChHHHHHcCCccccceeecch
Q 027245 149 EQTKFKGEVYADPNHSSYEALSFVSGVLVTFTPK 182 (226)
Q Consensus 149 ~~~~~pfpll~Dp~~~ly~alGv~~~~~~t~~p~ 182 (226)
-+.+.+.|.++.+.+.|+........+-|.
T Consensus 480 ----~~~~~~~d~~g~~~~~~~~~~~~~~lvRPD 509 (538)
T PRK06183 480 ----AQDDHDSDVDGALRAWLARHGASAVLLRPD 509 (538)
T ss_pred ----CCCceeecCCchHHHHHHhCCCEEEEECCC
Confidence 234578899999999999876655555554
No 210
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=77.47 E-value=8.3 Score=32.16 Aligned_cols=71 Identities=8% Similarity=0.082 Sum_probs=37.7
Q ss_pred CCeEEEEEecCCCChhHHHHHHH-HHHh-HHHHHHcCCEEEEEeCCCHHHHHHHH--------HHcCCceeEEecCChHH
Q 027245 96 DRKAVVAFARHFGCVLCRKRADY-LAAK-KDVMDASGVALVLIGPGSVEQARTFS--------EQTKFKGEVYADPNHSS 165 (226)
Q Consensus 96 ~~~vVVvF~R~~~Cp~C~~el~~-L~~~-~~~l~~~Gv~lVaIs~~~~~~i~~f~--------~~~~~pfpll~Dp~~~l 165 (226)
+.|.|++.+-..||..|.....+ +++. -.++-+....-|-|..+....++..- ...|||..|+.+|+++.
T Consensus 36 e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~FI~VkvDree~Pdid~~y~~~~~~~~~~gGwPl~vfltPdg~p 115 (163)
T PF03190_consen 36 ENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRNFIPVKVDREERPDIDKIYMNAVQAMSGSGGWPLTVFLTPDGKP 115 (163)
T ss_dssp HT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH-EEEEEETTT-HHHHHHHHHHHHHHHS---SSEEEEE-TTS-E
T ss_pred cCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCCEEEEEeccccCccHHHHHHHHHHHhcCCCCCCceEEECCCCCe
Confidence 35788889999999999975542 2221 22233345556667777644444332 35689999999999874
Q ss_pred H
Q 027245 166 Y 166 (226)
Q Consensus 166 y 166 (226)
+
T Consensus 116 ~ 116 (163)
T PF03190_consen 116 F 116 (163)
T ss_dssp E
T ss_pred e
Confidence 3
No 211
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=76.70 E-value=11 Score=29.17 Aligned_cols=34 Identities=24% Similarity=0.390 Sum_probs=28.3
Q ss_pred HhHHHHHHcCCEEEEEeCCCHHHHHHHHHHcCCc
Q 027245 121 AKKDVMDASGVALVLIGPGSVEQARTFSEQTKFK 154 (226)
Q Consensus 121 ~~~~~l~~~Gv~lVaIs~~~~~~i~~f~~~~~~p 154 (226)
+...++++.|+.+++++..+.+.++...+++++.
T Consensus 84 ~~L~~l~~~~~~~~i~Sn~~~~~~~~~l~~~~~~ 117 (176)
T PF13419_consen 84 ELLERLKAKGIPLVIVSNGSRERIERVLERLGLD 117 (176)
T ss_dssp HHHHHHHHTTSEEEEEESSEHHHHHHHHHHTTHG
T ss_pred hhhhhcccccceeEEeecCCcccccccccccccc
Confidence 3456677789999999999998888888888876
No 212
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=76.02 E-value=4.5 Score=31.74 Aligned_cols=66 Identities=17% Similarity=0.271 Sum_probs=50.9
Q ss_pred EEEEecCCCChhHHHHHHHHHHhHHHHHHcCCEEEEE--eCC--CHHHHHHHHHHcCCceeEEecCChHHHHHcCCc
Q 027245 100 VVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLI--GPG--SVEQARTFSEQTKFKGEVYADPNHSSYEALSFV 172 (226)
Q Consensus 100 VVvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~lVaI--s~~--~~~~i~~f~~~~~~pfpll~Dp~~~ly~alGv~ 172 (226)
.|.+|...-|.-|++-. ..|++.|+....| ..+ +.+++.+|.++.+.++.-+....+..|++||..
T Consensus 2 ~itiy~~p~C~t~rka~-------~~L~~~gi~~~~~~y~~~~~s~~eL~~~l~~~g~~~~~li~t~~~~~r~L~~~ 71 (117)
T COG1393 2 MITIYGNPNCSTCRKAL-------AWLEEHGIEYTFIDYLKTPPSREELKKILSKLGDGVEELINTRGTTYRELNLD 71 (117)
T ss_pred eEEEEeCCCChHHHHHH-------HHHHHcCCCcEEEEeecCCCCHHHHHHHHHHcCccHHHHHHhccchHHHcCCc
Confidence 36778889999999754 4456677665444 333 458999999999999888888999999999943
No 213
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=74.90 E-value=11 Score=26.60 Aligned_cols=48 Identities=17% Similarity=0.325 Sum_probs=28.7
Q ss_pred CCCChhHHHHHHHHHHhHHHHHHcCCEEEEEeCCCHHHHHHHHHHcCCc-ee-EEec
Q 027245 106 HFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFK-GE-VYAD 160 (226)
Q Consensus 106 ~~~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs~~~~~~i~~f~~~~~~p-fp-ll~D 160 (226)
+.+||.|.+-...+.+..+++ |+.+-.+...+.+++ +++++. .| ++.|
T Consensus 7 ~~~C~~C~~~~~~~~~~~~~~---~i~~ei~~~~~~~~~----~~ygv~~vPalvIn 56 (76)
T PF13192_consen 7 SPGCPYCPELVQLLKEAAEEL---GIEVEIIDIEDFEEI----EKYGVMSVPALVIN 56 (76)
T ss_dssp CSSCTTHHHHHHHHHHHHHHT---TEEEEEEETTTHHHH----HHTT-SSSSEEEET
T ss_pred CCCCCCcHHHHHHHHHHHHhc---CCeEEEEEccCHHHH----HHcCCCCCCEEEEC
Confidence 677999997666666665544 566666665555444 344543 34 5555
No 214
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=74.59 E-value=6 Score=30.48 Aligned_cols=66 Identities=11% Similarity=0.180 Sum_probs=47.9
Q ss_pred EEEecCCCChhHHHHHHHHHHhHHHHHHcCCEEEEEeC--C--CHHHHHHHHHHcCCce-eEEecCChHHHHHcCCcc
Q 027245 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGP--G--SVEQARTFSEQTKFKG-EVYADPNHSSYEALSFVS 173 (226)
Q Consensus 101 VvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs~--~--~~~~i~~f~~~~~~pf-pll~Dp~~~ly~alGv~~ 173 (226)
|.+|-...|.-|++-...| ++.|+.+..+.. + +.++++.+.+..+++. .=+.......|+.+++..
T Consensus 1 i~iy~~~~C~t~rkA~~~L-------~~~~i~~~~~di~~~p~t~~el~~~l~~~g~~~~~~lin~~~~~~~~l~~~~ 71 (114)
T TIGR00014 1 VTIYHNPRCSKSRNTLALL-------EDKGIEPEVVKYLKNPPTKSELEAIFAKLGLTVAREMIRTKEALYKELGLSD 71 (114)
T ss_pred CEEEECCCCHHHHHHHHHH-------HHCCCCeEEEeccCCCcCHHHHHHHHHHcCCchHHHHHhcCCcHHHHcCCCc
Confidence 3578889999999855544 455666555553 3 3479999999988653 226688999999998864
No 215
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=73.68 E-value=8.4 Score=35.59 Aligned_cols=33 Identities=6% Similarity=-0.031 Sum_probs=28.0
Q ss_pred CCeEEEEEecCCCChhHHHHHHHHHHhHHHHHH
Q 027245 96 DRKAVVAFARHFGCVLCRKRADYLAAKKDVMDA 128 (226)
Q Consensus 96 ~~~vVVvF~R~~~Cp~C~~el~~L~~~~~~l~~ 128 (226)
..-+|++.|.+.||++.+.-.+-+.+..+.+++
T Consensus 12 s~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~ 44 (375)
T KOG0912|consen 12 SNELVFVNFYADWCRFSQMLKPIFEEAAAKFKQ 44 (375)
T ss_pred cceEEeeeeehhhchHHHHHhHHHHHHHHHHHH
Confidence 345888999999999999999999998777654
No 216
>PRK10853 putative reductase; Provisional
Probab=72.34 E-value=7.9 Score=30.22 Aligned_cols=64 Identities=14% Similarity=0.245 Sum_probs=47.9
Q ss_pred EEEecCCCChhHHHHHHHHHHhHHHHHHcCCEEEEEeC--C--CHHHHHHHHHHcCCceeEEecCChHHHHHcCCcc
Q 027245 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGP--G--SVEQARTFSEQTKFKGEVYADPNHSSYEALSFVS 173 (226)
Q Consensus 101 VvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs~--~--~~~~i~~f~~~~~~pfpll~Dp~~~ly~alGv~~ 173 (226)
+.+|....|.-|++-+..| ++.|+.+..+.. + +.++++.|.++.|++ -+....+..|+.++...
T Consensus 2 i~iy~~~~C~t~rkA~~~L-------~~~~i~~~~~d~~k~p~s~~eL~~~l~~~g~~--~l~n~~~~~~r~L~~~~ 69 (118)
T PRK10853 2 VTLYGIKNCDTIKKARRWL-------EAQGIDYRFHDYRVDGLDSELLQGFIDELGWE--ALLNTRGTTWRKLDETQ 69 (118)
T ss_pred EEEEcCCCCHHHHHHHHHH-------HHcCCCcEEeehccCCcCHHHHHHHHHHcCHH--HHHhcCCchHHhCCHhH
Confidence 5688899999999865554 445766666653 2 457999999988865 37788899999988753
No 217
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=72.17 E-value=8 Score=34.02 Aligned_cols=38 Identities=21% Similarity=0.220 Sum_probs=26.3
Q ss_pred CCeEEEEEecCCCChhHHHHHHHHHHhHHHHHHcCCEEEEE
Q 027245 96 DRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLI 136 (226)
Q Consensus 96 ~~~vVVvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~lVaI 136 (226)
+.+.+|+.|--..||+|++...++.+..+ ..+|+|..+
T Consensus 116 ~ak~~I~vFtDp~CpyC~kl~~~l~~~~~---~g~V~v~~i 153 (251)
T PRK11657 116 DAPRIVYVFADPNCPYCKQFWQQARPWVD---SGKVQLRHI 153 (251)
T ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHhh---cCceEEEEE
Confidence 44667777789999999998888776543 223555444
No 218
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=71.96 E-value=5.5 Score=27.74 Aligned_cols=35 Identities=20% Similarity=0.101 Sum_probs=24.9
Q ss_pred EEEecCCCChhHHHHHHHHHHhHHHHHHcCCEEEEE
Q 027245 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLI 136 (226)
Q Consensus 101 VvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~lVaI 136 (226)
|.+|....||.|....+.|.+.... ...+++++-+
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~-~~~~~~~~~~ 35 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYA-DDGGVRVVYR 35 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhh-cCCcEEEEEe
Confidence 4567889999999999999887632 2345555544
No 219
>PF09695 YtfJ_HI0045: Bacterial protein of unknown function (YtfJ_HI0045); InterPro: IPR006513 These are sequences from gammaproteobacteria that are related to the Escherichia coli protein, YtfJ.
Probab=71.82 E-value=29 Score=28.96 Aligned_cols=103 Identities=19% Similarity=0.157 Sum_probs=58.6
Q ss_pred cccCcCCCcEEecC-----CCCeEeCCCccC----CCeEEEEEecCCCChhHHHHHHHHHH-hHHH-HHHcCCEEEEE-e
Q 027245 70 DTKNLLDTVKVYDV-----NGNAIPISDLWK----DRKAVVAFARHFGCVLCRKRADYLAA-KKDV-MDASGVALVLI-G 137 (226)
Q Consensus 70 ~~g~~apdf~L~D~-----~G~~v~Lsdl~~----~~~vVVvF~R~~~Cp~C~~el~~L~~-~~~~-l~~~Gv~lVaI-s 137 (226)
..|+.+|.+.+.|. +|..++... |. .+||.||++-+ +-+...+.-..|.+ ..+. |.....+...| .
T Consensus 2 ~~~~~~p~V~v~d~Gel~l~~~~~~y~~-W~s~~l~GKVrviq~iA-Gr~sake~N~~l~~aik~a~f~~d~yqtttIiN 79 (160)
T PF09695_consen 2 TLGQPVPPVTVADKGELILNGDKISYQP-WNSAQLPGKVRVIQHIA-GRSSAKEMNAPLIEAIKAAKFPHDKYQTTTIIN 79 (160)
T ss_pred cCCCcCCceEecCCceEEEcCCcccccc-cCccccCCCEEEEEEec-cCCchhHhhHHHHHHHHHcCCCccceeEEEEEe
Confidence 46788888888764 344554443 22 25777777643 33333333333333 2222 44444555544 3
Q ss_pred CCC-----HHHHHHHHHHcC--Ccee-EEecCChHHHHHcCCccc
Q 027245 138 PGS-----VEQARTFSEQTK--FKGE-VYADPNHSSYEALSFVSG 174 (226)
Q Consensus 138 ~~~-----~~~i~~f~~~~~--~pfp-ll~Dp~~~ly~alGv~~~ 174 (226)
.|+ -..++..+++.. +|.. ++.|.++.+-++|++...
T Consensus 80 ~dDAi~gt~~fVrss~e~~kk~~p~s~~vlD~~G~~~~aW~L~~~ 124 (160)
T PF09695_consen 80 LDDAIWGTGGFVRSSAEDSKKEFPWSQFVLDSNGVVRKAWQLQEE 124 (160)
T ss_pred cccccccchHHHHHHHHHhhhhCCCcEEEEcCCCceeccccCCCC
Confidence 433 235555555544 5555 889999999999999864
No 220
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=69.93 E-value=23 Score=24.64 Aligned_cols=54 Identities=22% Similarity=0.275 Sum_probs=32.1
Q ss_pred EEEecCCCChhHHHHHHHHHHhHHHHHHcCC--EEEEEeCCCHHHHHHHHHHcCC-ceeEEecCC
Q 027245 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGV--ALVLIGPGSVEQARTFSEQTKF-KGEVYADPN 162 (226)
Q Consensus 101 VvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv--~lVaIs~~~~~~i~~f~~~~~~-pfpll~Dp~ 162 (226)
+..|...+||+|++-...|. ++|+ +++-|..+. ....+|.+.++. ..|++.|.+
T Consensus 2 ~~Ly~~~~sp~~~kv~~~L~-------~~gi~y~~~~v~~~~-~~~~~~~~~~p~~~vP~l~~~~ 58 (77)
T cd03041 2 LELYEFEGSPFCRLVREVLT-------ELELDVILYPCPKGS-PKRDKFLEKGGKVQVPYLVDPN 58 (77)
T ss_pred ceEecCCCCchHHHHHHHHH-------HcCCcEEEEECCCCh-HHHHHHHHhCCCCcccEEEeCC
Confidence 34567789999997555554 3444 344443322 234567666554 578888753
No 221
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=68.46 E-value=9.6 Score=26.07 Aligned_cols=54 Identities=11% Similarity=-0.049 Sum_probs=31.4
Q ss_pred EEecCCCChhHHHHHHHHHHhHHHHHHcCCEEEEEeCCCHHHHHHHHHHcCC-ceeEEecCC
Q 027245 102 AFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKF-KGEVYADPN 162 (226)
Q Consensus 102 vF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs~~~~~~i~~f~~~~~~-pfpll~Dp~ 162 (226)
..|...+||+|++-...|.+.- ...+++-|...+. ...|.+.++. ..|++.|.+
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~g-----l~~e~~~v~~~~~--~~~~~~~np~~~vP~L~~~~ 56 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLAG-----ITVELREVELKNK--PAEMLAASPKGTVPVLVLGN 56 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHcC-----CCcEEEEeCCCCC--CHHHHHHCCCCCCCEEEECC
Confidence 3566789999997655555432 2234555554322 2456555554 478887764
No 222
>PRK13601 putative L7Ae-like ribosomal protein; Provisional
Probab=67.47 E-value=22 Score=26.15 Aligned_cols=53 Identities=17% Similarity=0.171 Sum_probs=41.2
Q ss_pred HHHHHHcCCEEEEEeCCCH----HHHHHHHHHcCCceeEEecCChHHHHHcCCccccc
Q 027245 123 KDVMDASGVALVLIGPGSV----EQARTFSEQTKFKGEVYADPNHSSYEALSFVSGVL 176 (226)
Q Consensus 123 ~~~l~~~Gv~lVaIs~~~~----~~i~~f~~~~~~pfpll~Dp~~~ly~alGv~~~~~ 176 (226)
...++...+.+|.|..|-. ..+..+++.+++|+ ++.....++-++.|...+..
T Consensus 17 lkaIk~gkakLViiA~Da~~~~~k~i~~~c~~~~Vpv-~~~~t~~eLG~A~G~~v~aa 73 (82)
T PRK13601 17 LKAITNCNVLQVYIAKDAEEHVTKKIKELCEEKSIKI-VYIDTMKELGVMCGIDVGAA 73 (82)
T ss_pred HHHHHcCCeeEEEEeCCCCHHHHHHHHHHHHhCCCCE-EEeCCHHHHHHHHCCccCee
Confidence 4455667788999988864 35566789999999 78888899999999987643
No 223
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=66.74 E-value=13 Score=27.17 Aligned_cols=38 Identities=13% Similarity=0.111 Sum_probs=32.5
Q ss_pred HHHHHHhHHHHHHcCCEEEEEeCCCHHHHHHHHHHcCC
Q 027245 116 ADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKF 153 (226)
Q Consensus 116 l~~L~~~~~~l~~~Gv~lVaIs~~~~~~i~~f~~~~~~ 153 (226)
.+.+.+..+++++.|+.++.++....+.++.+.++.++
T Consensus 26 ~~~~~~~l~~l~~~g~~i~ivS~~~~~~~~~~~~~~~~ 63 (139)
T cd01427 26 YPGVKEALKELKEKGIKLALATNKSRREVLELLEELGL 63 (139)
T ss_pred CcCHHHHHHHHHHCCCeEEEEeCchHHHHHHHHHHcCC
Confidence 45666777888888999999999999999999999887
No 224
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=65.63 E-value=17 Score=34.32 Aligned_cols=41 Identities=17% Similarity=0.275 Sum_probs=26.3
Q ss_pred EEEecCCCChhHHHHHHHHHHhHHHHHHcCCEEEEEeCCCHHHHHHHH
Q 027245 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFS 148 (226)
Q Consensus 101 VvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs~~~~~~i~~f~ 148 (226)
|+-|-..|||+|.+- +.-|++.|+....|..+......++.
T Consensus 4 V~vys~~~Cp~C~~a-------K~~L~~~gi~~~~idi~~~~~~~~~~ 44 (410)
T PRK12759 4 VRIYTKTNCPFCDLA-------KSWFGANDIPFTQISLDDDVKRAEFY 44 (410)
T ss_pred EEEEeCCCCHHHHHH-------HHHHHHCCCCeEEEECCCChhHHHHH
Confidence 445678999999964 33445678886677776444333433
No 225
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=64.11 E-value=15 Score=31.40 Aligned_cols=46 Identities=13% Similarity=0.189 Sum_probs=34.4
Q ss_pred EecCCCCeEeCCCccCCCeEEEEEecCCCChhHHHHHHHHHHhHHHHH
Q 027245 80 VYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMD 127 (226)
Q Consensus 80 L~D~~G~~v~Lsdl~~~~~vVVvF~R~~~Cp~C~~el~~L~~~~~~l~ 127 (226)
....++..+.+++.. .++.++.|.-.-||+|.+.++.|.+.+-...
T Consensus 69 ~~~~~~~~~~~G~~~--~~v~v~~f~d~~Cp~C~~~~~~l~~~~i~~~ 114 (244)
T COG1651 69 YLTPDGKDVVLGNPY--APVTVVEFFDYTCPYCKEAFPELKKKYIDDG 114 (244)
T ss_pred eecCCCCcccccCCC--CCceEEEEecCcCccHHHHHHHHHHHhhhcC
Confidence 345567777777753 3788899999999999999999988554433
No 226
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=64.10 E-value=15 Score=35.43 Aligned_cols=96 Identities=16% Similarity=0.112 Sum_probs=58.4
Q ss_pred CccccCcCCCcEEecCCCCeEeCCCccCCCeEEEEEecCCCChhHHHHHHHHHHhHHHHHHcCCEEEEEeCCCHHHHHHH
Q 027245 68 SEDTKNLLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTF 147 (226)
Q Consensus 68 ~~~~g~~apdf~L~D~~G~~v~Lsdl~~~~~vVVvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs~~~~~~i~~f 147 (226)
...+|..+|+..|.+ +|+.++|.|++..+.+||.|-...+ .. +..+. .+....++.++.|+.+...
T Consensus 426 ~~~pG~r~p~~~~~~-~~~~~~l~dl~g~~f~ll~~~~~~~----~~---~~~~~-~~~~~~~~~~~~~~~~~~~----- 491 (547)
T PRK08132 426 GPVPGAPAPDAPVRA-DGEPGWLLDLLGGGFTLLLFGDDAA----AA---ALLQA-LAAAALPVRVVAVVPAGAA----- 491 (547)
T ss_pred CCCCCCCCCCCcccC-CCCceEHHHhcCCCEEEEEecCCch----hh---hhhhh-hhccCCceEEEEEecCccc-----
Confidence 456799999999874 5778899999966666666532110 11 11111 1122445667777655421
Q ss_pred HHHcCCceeEEecCChHHHHHcCCccccceeecc
Q 027245 148 SEQTKFKGEVYADPNHSSYEALSFVSGVLVTFTP 181 (226)
Q Consensus 148 ~~~~~~pfpll~Dp~~~ly~alGv~~~~~~t~~p 181 (226)
.-+...+.|+++.+++.||+...-...+-|
T Consensus 492 ----~~~~~~~~d~~~~~~~~~~~~~~~~~LvRP 521 (547)
T PRK08132 492 ----QAAAGVLEDADGLAAERYDARPGTVYLIRP 521 (547)
T ss_pred ----ccCcccccCcccHHHHHhCCCCCeEEEECC
Confidence 012346789999999999987654444444
No 227
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=63.82 E-value=20 Score=27.12 Aligned_cols=59 Identities=17% Similarity=0.308 Sum_probs=43.5
Q ss_pred cCCCChhHHHHHHHHHHhHHHHHHcCCEEEEEeCCC----HHHHHHHHHHcCCceeEEecCChHHHHHcC
Q 027245 105 RHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGS----VEQARTFSEQTKFKGEVYADPNHSSYEALS 170 (226)
Q Consensus 105 R~~~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs~~~----~~~i~~f~~~~~~pfpll~Dp~~~ly~alG 170 (226)
-...|.-|++-+. .|++.|+.+..|..-. .+++.++.+..+.++.-+.+.....|+.++
T Consensus 2 ~~~~C~t~rka~~-------~L~~~gi~~~~~d~~k~p~s~~el~~~l~~~~~~~~~lin~~~~~~k~l~ 64 (110)
T PF03960_consen 2 GNPNCSTCRKALK-------WLEENGIEYEFIDYKKEPLSREELRELLSKLGNGPDDLINTRSKTYKELG 64 (110)
T ss_dssp E-TT-HHHHHHHH-------HHHHTT--EEEEETTTS---HHHHHHHHHHHTSSGGGGB-TTSHHHHHTT
T ss_pred cCCCCHHHHHHHH-------HHHHcCCCeEeehhhhCCCCHHHHHHHHHHhcccHHHHhcCccchHhhhh
Confidence 3467999987544 4567888888887743 478999999999988888899999999999
No 228
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=63.30 E-value=10 Score=33.71 Aligned_cols=38 Identities=24% Similarity=0.238 Sum_probs=30.8
Q ss_pred CccCCCeEEEEEecCCCChhHHHHHHHHHHhHHHHHHc
Q 027245 92 DLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDAS 129 (226)
Q Consensus 92 dl~~~~~vVVvF~R~~~Cp~C~~el~~L~~~~~~l~~~ 129 (226)
|+..++|+.|+|.-..|||+|-.+--.|-.....|-..
T Consensus 53 d~~~~Gk~~v~~igw~gCP~~A~~sW~L~~ALsrfGn~ 90 (249)
T PF06053_consen 53 DLAPNGKPEVIFIGWEGCPYCAAESWALYIALSRFGNF 90 (249)
T ss_pred ccCCCCeeEEEEEecccCccchhhHHHHHHHHHhcCCe
Confidence 34457899999999999999999888888877766543
No 229
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=62.91 E-value=33 Score=26.13 Aligned_cols=40 Identities=10% Similarity=0.067 Sum_probs=33.0
Q ss_pred HHHHHhHHHHHHcCCEEEEEeCCC--------HHHHHHHHHHcCCcee
Q 027245 117 DYLAAKKDVMDASGVALVLIGPGS--------VEQARTFSEQTKFKGE 156 (226)
Q Consensus 117 ~~L~~~~~~l~~~Gv~lVaIs~~~--------~~~i~~f~~~~~~pfp 156 (226)
+...+..+++++.|+.++.++... .+.++++.+..++.+.
T Consensus 28 ~~v~~~l~~L~~~g~~l~i~Sn~~~~~~~~~~~~~~~~~l~~~~l~~~ 75 (132)
T TIGR01662 28 PEVPDALAELKEAGYKVVIVTNQSGIGRGKFSSGRVARRLEELGVPID 75 (132)
T ss_pred CCHHHHHHHHHHCCCEEEEEECCccccccHHHHHHHHHHHHHCCCCEE
Confidence 455667788888999999999988 7788889999888754
No 230
>PRK04148 hypothetical protein; Provisional
Probab=61.99 E-value=68 Score=25.80 Aligned_cols=95 Identities=11% Similarity=0.134 Sum_probs=58.8
Q ss_pred HHHHcCCEEEEEeCCCHHHHHHHHHHcCCceeE--EecCChHHHHHcCCccccceeecchhhHHHHHHHHhhhccccc-c
Q 027245 125 VMDASGVALVLIGPGSVEQARTFSEQTKFKGEV--YADPNHSSYEALSFVSGVLVTFTPKAGLKIIQSYMEGYRQDWK-L 201 (226)
Q Consensus 125 ~l~~~Gv~lVaIs~~~~~~i~~f~~~~~~pfpl--l~Dp~~~ly~alGv~~~~~~t~~p~a~~~~~~~~~~G~r~~w~-~ 201 (226)
.+.+.|.+|++|-.+... ++ .+++.+..+-+ +.+|+.++|+..++..+.. .|..+..-+-.+++...-+.- .
T Consensus 34 ~L~~~G~~ViaIDi~~~a-V~-~a~~~~~~~v~dDlf~p~~~~y~~a~liysir---pp~el~~~~~~la~~~~~~~~i~ 108 (134)
T PRK04148 34 KLKESGFDVIVIDINEKA-VE-KAKKLGLNAFVDDLFNPNLEIYKNAKLIYSIR---PPRDLQPFILELAKKINVPLIIK 108 (134)
T ss_pred HHHHCCCEEEEEECCHHH-HH-HHHHhCCeEEECcCCCCCHHHHhcCCEEEEeC---CCHHHHHHHHHHHHHcCCCEEEE
Confidence 345679999999888752 33 33444543321 3359999999888765532 345555555555565544433 4
Q ss_pred cccCCccccCccccc--CceEEEEE
Q 027245 202 SFERDTVSRGGWIKK--LGMIQIFR 224 (226)
Q Consensus 202 ~~~GD~~Q~GG~~q~--gg~~~~~~ 224 (226)
...||....+--+.| |--|.+|+
T Consensus 109 ~l~~e~~~~~~kl~ny~~~~~y~~~ 133 (134)
T PRK04148 109 PLSGEEPIKELKLINYKGKPIYVWK 133 (134)
T ss_pred cCCCCCCCcceEEEecCCeEEEEeC
Confidence 678888777777765 65555554
No 231
>PF11072 DUF2859: Protein of unknown function (DUF2859); InterPro: IPR021300 This model describes a protein family exemplified by PFL_4695 of Pseudomonas fluorescens Pf-5. Full-length proteins in this family show some architectural variety, but this model represents a conserved domain. Most or all member proteins belong to laterally transferred chromosomal islands called integrative conjugative elements, or ICE.
Probab=61.67 E-value=43 Score=27.31 Aligned_cols=61 Identities=5% Similarity=0.046 Sum_probs=50.7
Q ss_pred HHHHHHHhHHHHHHcCCEEEEEeCCCHHHHHHHHHHcCCceeEEecCChHHHHHcCCccccc
Q 027245 115 RADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKGEVYADPNHSSYEALSFVSGVL 176 (226)
Q Consensus 115 el~~L~~~~~~l~~~Gv~lVaIs~~~~~~i~~f~~~~~~pfpll~Dp~~~ly~alGv~~~~~ 176 (226)
-...|+++.++|++.++.=++|.+++.+.++..++.- -..+|+...-.++.+.||+...+.
T Consensus 74 S~~WL~~~~~~L~~l~AvGlVVNV~t~~~L~~Lr~la-pgl~l~P~sgddLA~rL~l~HYPv 134 (142)
T PF11072_consen 74 SRQWLQQNAEELKQLGAVGLVVNVATEAALQRLRQLA-PGLPLLPVSGDDLARRLGLSHYPV 134 (142)
T ss_pred HHHHHHHHHHHHHHCCCeEEEEecCCHHHHHHHHHHc-CCCeecCCCHHHHHHHhCCCcccE
Confidence 4567889999999999999999999998888877663 346788888899999999987643
No 232
>TIGR03765 ICE_PFL_4695 integrating conjugative element protein, PFL_4695 family. This model describes a protein family exemplified by PFL_4695 of Pseudomonas fluorescens Pf-5. Full-length proteins in this family show some architectural variety, but this model represents a conserved domain. Most or all member proteins belong to laterally transferred chromosomal islands called integrative conjugative elements, or ICE.
Probab=61.39 E-value=44 Score=25.93 Aligned_cols=61 Identities=7% Similarity=0.054 Sum_probs=50.0
Q ss_pred HHHHHHHhHHHHHHcCCEEEEEeCCCHHHHHHHHHHcCCceeEEecCChHHHHHcCCccccc
Q 027245 115 RADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKGEVYADPNHSSYEALSFVSGVL 176 (226)
Q Consensus 115 el~~L~~~~~~l~~~Gv~lVaIs~~~~~~i~~f~~~~~~pfpll~Dp~~~ly~alGv~~~~~ 176 (226)
-...|+++.+++++.++.=++|++++.+.+++.++-. =..++...+--++.+.||+...+.
T Consensus 36 S~~WL~~~~~~L~~l~AvGlVVnV~t~~~l~~Lr~la-pgl~l~P~sgddLa~rL~l~hYPv 96 (105)
T TIGR03765 36 SRQWLQQNAAALKSLGAVGLVVNVETAAALQRLRALA-PGLPLLPVSGDDLAERLGLRHYPV 96 (105)
T ss_pred HHHHHHHHHHHHHHCCCeEEEEecCCHHHHHHHHHHc-CCCcccCCCHHHHHHHhCCCcccE
Confidence 3567889999999999999999999998888876663 245778888889999999987644
No 233
>PRK13600 putative ribosomal protein L7Ae-like; Provisional
Probab=60.56 E-value=40 Score=24.97 Aligned_cols=56 Identities=7% Similarity=0.064 Sum_probs=43.1
Q ss_pred HHhHHHHHHcCCEEEEEeCCCH----HHHHHHHHHcCCceeEEecCChHHHHHcCCccccc
Q 027245 120 AAKKDVMDASGVALVLIGPGSV----EQARTFSEQTKFKGEVYADPNHSSYEALSFVSGVL 176 (226)
Q Consensus 120 ~~~~~~l~~~Gv~lVaIs~~~~----~~i~~f~~~~~~pfpll~Dp~~~ly~alGv~~~~~ 176 (226)
.+-...++...+.+|.|..|-. +.+...|++.++|+ ++.|...++-++.|+..+..
T Consensus 19 kqt~Kai~kg~~~~v~iA~Da~~~vv~~l~~lceek~Ip~-v~V~s~~~LGkAcgi~V~aa 78 (84)
T PRK13600 19 KETLKALKKDQVTSLIIAEDVEVYLMTRVLSQINQKNIPV-SFFKSKHALGKHVGINVNAT 78 (84)
T ss_pred HHHHHHHhcCCceEEEEeCCCCHHHHHHHHHHHHHcCCCE-EEECCHHHHHHHhCCCcCeE
Confidence 3445556666677888877742 57788999999988 78899999999999987643
No 234
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=59.96 E-value=11 Score=24.14 Aligned_cols=56 Identities=21% Similarity=0.096 Sum_probs=29.8
Q ss_pred EecCCCChhHHHHHHHHHHhHHHHHHcCCEEEEEeCCCHHHHHHHHHHcCC-ceeEEecCChH
Q 027245 103 FARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKF-KGEVYADPNHS 164 (226)
Q Consensus 103 F~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs~~~~~~i~~f~~~~~~-pfpll~Dp~~~ 164 (226)
+|-..+||.|++-...|... ....+++-+..++.... .+.+..+. ..|++.+.+..
T Consensus 3 ly~~~~~~~~~~~~~~l~~~-----~i~~~~~~~~~~~~~~~-~~~~~~~~~~~P~l~~~~~~ 59 (71)
T cd00570 3 LYYFPGSPRSLRVRLALEEK-----GLPYELVPVDLGEGEQE-EFLALNPLGKVPVLEDGGLV 59 (71)
T ss_pred EEeCCCCccHHHHHHHHHHc-----CCCcEEEEeCCCCCCCH-HHHhcCCCCCCCEEEECCEE
Confidence 45567799999655544443 22344555554443222 34444443 46777776443
No 235
>PTZ00258 GTP-binding protein; Provisional
Probab=59.78 E-value=32 Score=32.48 Aligned_cols=127 Identities=15% Similarity=0.123 Sum_probs=76.3
Q ss_pred CCeEEEEEecC--CCChhHHHHHHHHHHhHHHHHHc-CCEEEEEeCC---------CHHHHHHHHHHcCCceeEEecCCh
Q 027245 96 DRKAVVAFARH--FGCVLCRKRADYLAAKKDVMDAS-GVALVLIGPG---------SVEQARTFSEQTKFKGEVYADPNH 163 (226)
Q Consensus 96 ~~~vVVvF~R~--~~Cp~C~~el~~L~~~~~~l~~~-Gv~lVaIs~~---------~~~~i~~f~~~~~~pfpll~Dp~~ 163 (226)
.+|++++.--. ..++.-.+++..+.+..+ +. +..+|.|+.. +.++..+|.+++|+.=+-+-.--+
T Consensus 220 ~KP~iyv~N~~E~D~~~~~~~~~~~l~~~~~---~~~~~~~v~~sa~~E~el~~l~~~~e~~~fl~~~g~~~~gl~~li~ 296 (390)
T PTZ00258 220 AKPMIYLVNMSEKDFIRQKNKWLAKIKEWVG---EKGGGPIIPYSAEFEEELAELGSEEERKEYLEEYGIKQSMLDKIIK 296 (390)
T ss_pred cCCEEEEEECchhhhcccchHHHHHHHHHHH---hcCCCeEEEeeHHHHHHHHhcCCHHHHHHHHHHcCCCcccHHHHHH
Confidence 46776665444 221222344444444333 33 5778888841 346677899999975444544557
Q ss_pred HHHHHcCCccccc--------eee-----cchhhHHHHHHHHhhhc--cccccc------------ccCCccccCccc-c
Q 027245 164 SSYEALSFVSGVL--------VTF-----TPKAGLKIIQSYMEGYR--QDWKLS------------FERDTVSRGGWI-K 215 (226)
Q Consensus 164 ~ly~alGv~~~~~--------~t~-----~p~a~~~~~~~~~~G~r--~~w~~~------------~~GD~~Q~GG~~-q 215 (226)
..|+.||+.+-+. |++ .|.+...+.+-+.+||. .+|.++ +.|-.++.|-.| -
T Consensus 297 ~~~~lL~li~ffT~g~~e~raw~i~~Gsta~~aAg~IHsD~~kgFi~Aev~~~~d~~~~g~~~~ak~~g~~r~eGkdYiv 376 (390)
T PTZ00258 297 TGYKLLNLIHFFTAGPDEVRCWTIQKGTKAPQAAGVIHSDFEKGFICAEVMKYEDFLELGSEAAVKAEGKYRQEGKDYVV 376 (390)
T ss_pred HHHHHhCCEEEEcCCCCceeEEEeCCCCcHHHHHhhhhhHHhhCcEEEEECcHHHHHHcCCHHHHHhcCceeeeCCceEe
Confidence 8899999865332 222 12233345566777775 666633 557777777777 6
Q ss_pred cCceEEEEEe
Q 027245 216 KLGMIQIFRI 225 (226)
Q Consensus 216 ~gg~~~~~~~ 225 (226)
+=|.|.-||.
T Consensus 377 ~DGDIi~f~f 386 (390)
T PTZ00258 377 QDGDIIFFKF 386 (390)
T ss_pred cCCCEEEEEe
Confidence 7788888885
No 236
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=59.44 E-value=51 Score=26.87 Aligned_cols=83 Identities=16% Similarity=0.267 Sum_probs=51.9
Q ss_pred HHHHHhHHHHHHcCCEEEEEeCCCHHHHHHHHHHcCCc--ee-EEe-c------CChHH----HHHcCCccccceeecch
Q 027245 117 DYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFK--GE-VYA-D------PNHSS----YEALSFVSGVLVTFTPK 182 (226)
Q Consensus 117 ~~L~~~~~~l~~~Gv~lVaIs~~~~~~i~~f~~~~~~p--fp-ll~-D------p~~~l----y~alGv~~~~~~t~~p~ 182 (226)
+...+..++++++|+.+.+++.++.+.++...+..++. |+ +++ | |+..+ .+.+|+...-...+ ..
T Consensus 95 ~~~~~~L~~L~~~g~~~~i~Sn~~~~~~~~~l~~~gl~~~fd~i~~s~~~~~~KP~~~~~~~~~~~~~~~p~~~~~v-gD 173 (198)
T TIGR01428 95 PDVPAGLRALKERGYRLAILSNGSPAMLKSLVKHAGLDDPFDAVLSADAVRAYKPAPQVYQLALEALGVPPDEVLFV-AS 173 (198)
T ss_pred CCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHCCChhhhheeEehhhcCCCCCCHHHHHHHHHHhCCChhhEEEE-eC
Confidence 44455567778889999999999988888888888873 54 332 2 44443 44577654332222 23
Q ss_pred hhHHHHHHHHhhhccccc
Q 027245 183 AGLKIIQSYMEGYRQDWK 200 (226)
Q Consensus 183 a~~~~~~~~~~G~r~~w~ 200 (226)
....+..+..-|++..|-
T Consensus 174 ~~~Di~~A~~~G~~~i~v 191 (198)
T TIGR01428 174 NPWDLGGAKKFGFKTAWV 191 (198)
T ss_pred CHHHHHHHHHCCCcEEEe
Confidence 334554555566666653
No 237
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=59.38 E-value=31 Score=27.78 Aligned_cols=41 Identities=12% Similarity=0.101 Sum_probs=30.8
Q ss_pred EEEecCCCChhHHHHHHHHHHhHHHHHHcCCEEEEEeCCCH
Q 027245 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSV 141 (226)
Q Consensus 101 VvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs~~~~ 141 (226)
|.||.-+-||.|-.-.+.|.+..+++.+..++..-+.....
T Consensus 2 i~~~~D~~Cp~cy~~~~~l~~l~~~~~~~~i~~~p~~l~~~ 42 (193)
T PF01323_consen 2 IEFFFDFICPWCYLASPRLRKLRAEYPDVEIEWRPFPLRPD 42 (193)
T ss_dssp EEEEEBTTBHHHHHHHHHHHHHHHHHTTCEEEEEEESSSTH
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhcCCcEEEeccccccc
Confidence 67888999999999999999988887444455555554443
No 238
>PF00875 DNA_photolyase: DNA photolyase from Prosite.; InterPro: IPR006050 DNA photolyases are enzymes that bind to DNA containing pyrimidine dimers: on absorption of visible light, they catalyse dimer splitting into the constituent monomers, a process called photoreactivation []. This is a DNA repair mechanism, repairing mismatched pyrimidine dimers induced by exposure to ultra-violet light []. The precise mechanisms involved in substrate binding, conversion of light energy to the mechanical energy needed to rupture the cyclobutane ring, and subsequent release of the product are uncertain []. Analysis of DNA lyases has revealed the presence of an intrinsic chromophore, all monomers containing a reduced FAD moiety, and, in addition, either a reduced pterin or 8-hydroxy-5-diazaflavin as a second chromophore [, ]. Either chromophore may act as the primary photon acceptor, peak absorptions occurring in the blue region of the spectrum and in the UV-B region, at a wavelength around 290nm []. This domain binds a light harvesting cofactor.; GO: 0003913 DNA photolyase activity, 0006281 DNA repair; PDB: 3UMV_A 2J07_A 1IQU_A 2J09_A 2J08_A 1IQR_A 1DNP_A 3FY4_B 2VTB_A 2J4D_B ....
Probab=58.69 E-value=30 Score=27.76 Aligned_cols=65 Identities=14% Similarity=0.163 Sum_probs=43.8
Q ss_pred CeEEEEEecCCC-------ChhHHH-HHHHHHHhHHHHHHcCCEEEEEeCCCHHHHHHHHHHcCCceeEEecCC
Q 027245 97 RKAVVAFARHFG-------CVLCRK-RADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKGEVYADPN 162 (226)
Q Consensus 97 ~~vVVvF~R~~~-------Cp~C~~-el~~L~~~~~~l~~~Gv~lVaIs~~~~~~i~~f~~~~~~pfpll~Dp~ 162 (226)
.+++.+|+.... .+.-.. ....|.++..++++.|+.++++..+..+.+.++++++++. .|+.+.+
T Consensus 25 ~~v~~vfv~d~~~~~~~~~~~~r~~Fl~~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~-~V~~~~~ 97 (165)
T PF00875_consen 25 DPVLPVFVFDPEEFHPYRIGPRRRRFLLESLADLQESLRKLGIPLLVLRGDPEEVLPELAKEYGAT-AVYFNEE 97 (165)
T ss_dssp SEEEEEEEE-HHGGTTCSSCHHHHHHHHHHHHHHHHHHHHTTS-EEEEESSHHHHHHHHHHHHTES-EEEEE--
T ss_pred CCeEEEEEecccccccccCcchHHHHHHHHHHHHHHHHHhcCcceEEEecchHHHHHHHHHhcCcC-eeEeccc
Confidence 466666654322 222222 3566777889999999999999888888999999998853 3777655
No 239
>PF05176 ATP-synt_10: ATP10 protein; InterPro: IPR007849 This entry represents the ATPase assembly factor ATP10 found in mitochondria, which is essential for the assembly of the mitochondrial F1-F0 complex. A yeast nuclear gene (ATP10) encodes a product that is essential for the assembly of a functional mitochondrial ATPase complex. Mutations in ATP10 induce a loss of rutamycin sensitivity in the mitochondrial ATPase, but do not affect the respiratory enzymes. ATP10 has an Mr of 30,293 and its primary structure is not related to any known subunit of the yeast or mammalian mitochondrial ATPase complexes. ATP10 is associated with the mitochondrial membrane. It is suggested that the ATP10 product is not a subunit of the ATPase complex but rather a protein required for the assembly of the F0 sector of the complex [].; GO: 0033615 mitochondrial proton-transporting ATP synthase complex assembly, 0005743 mitochondrial inner membrane
Probab=58.09 E-value=20 Score=31.83 Aligned_cols=104 Identities=13% Similarity=0.099 Sum_probs=61.9
Q ss_pred ccccCcCCCcEEecCCCCeEeCCCccCCCeE-EEEEecCCCChhHHHHHHHHHHhHHHH-HHc--CCEEEEEeCCCHHH-
Q 027245 69 EDTKNLLDTVKVYDVNGNAIPISDLWKDRKA-VVAFARHFGCVLCRKRADYLAAKKDVM-DAS--GVALVLIGPGSVEQ- 143 (226)
Q Consensus 69 ~~~g~~apdf~L~D~~G~~v~Lsdl~~~~~v-VVvF~R~~~Cp~C~~el~~L~~~~~~l-~~~--Gv~lVaIs~~~~~~- 143 (226)
.+..-..|++...+.+|+.+++.+.++++.. |.+|++.++=..+..+... ..+++ .+. .+++|-|+..+...
T Consensus 95 ~~kAlyFP~l~g~tL~g~~~~~~~~l~gkvSlV~l~s~~~ge~~~~sw~~p---~~~~~~~~~~~~~q~v~In~~e~~~k 171 (252)
T PF05176_consen 95 ADKALYFPNLQGKTLAGNKVDTTDLLRGKVSLVCLFSSAWGEEMVDSWTSP---FLEDFLQEPYGRVQIVEINLIENWLK 171 (252)
T ss_pred HHhCCcCCCCccccCCCCCcccccccCCceEEEEEeehHHHHHHHHHHhhH---HHHHHhhCCCCceEEEEEecchHHHH
Confidence 3455679999999999999999999988754 5555554443333333331 23333 233 79999999876421
Q ss_pred --HHHHH-HH--cCCc-----eeEEec-C--ChHHHHHcCCcccc
Q 027245 144 --ARTFS-EQ--TKFK-----GEVYAD-P--NHSSYEALSFVSGV 175 (226)
Q Consensus 144 --i~~f~-~~--~~~p-----fpll~D-p--~~~ly~alGv~~~~ 175 (226)
+..+. .. ..+| --++++ . ...+-+++||....
T Consensus 172 ~~l~~~~~~~lrk~ip~~~h~~Yf~~~~~~~~~~iRe~Lgi~N~~ 216 (252)
T PF05176_consen 172 SWLVKLFMGSLRKSIPEERHDRYFIVYRGQLSDDIREALGINNSY 216 (252)
T ss_pred HHHHHHHhhhhhccCCHHHCceEEEEeCCcccHHHHHHhCCCCCC
Confidence 22211 11 1122 223444 3 56788999987653
No 240
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=56.22 E-value=24 Score=27.29 Aligned_cols=64 Identities=17% Similarity=0.289 Sum_probs=44.0
Q ss_pred EEEecCCCChhHHHHHHHHHHhHHHHHHcCCEEEEEe--CC--CHHHHHHHHHHcCCceeEEecCChHHHHHcCCcc
Q 027245 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIG--PG--SVEQARTFSEQTKFKGEVYADPNHSSYEALSFVS 173 (226)
Q Consensus 101 VvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs--~~--~~~~i~~f~~~~~~pfpll~Dp~~~ly~alGv~~ 173 (226)
|.+|-...|.-|++-...| ++.|+..-.+. -+ +.++++.+.++.++ .-+.......|+.++...
T Consensus 2 i~iy~~p~C~~crkA~~~L-------~~~gi~~~~~d~~~~p~s~~eL~~~l~~~g~--~~l~n~~~~~~r~~~~~~ 69 (113)
T cd03033 2 IIFYEKPGCANNARQKALL-------EAAGHEVEVRDLLTEPWTAETLRPFFGDLPV--AEWFNPAAPRVKSGEVVP 69 (113)
T ss_pred EEEEECCCCHHHHHHHHHH-------HHcCCCcEEeehhcCCCCHHHHHHHHHHcCH--HHHHhcccHHHHhcCCCc
Confidence 4567889999999755444 45565554444 33 35799999998764 444567788899877764
No 241
>PRK01018 50S ribosomal protein L30e; Reviewed
Probab=55.83 E-value=49 Score=24.94 Aligned_cols=51 Identities=8% Similarity=0.029 Sum_probs=40.2
Q ss_pred HHHHHHcCCEEEEEeCCCH----HHHHHHHHHcCCceeEEecCChHHHHHcCCcc
Q 027245 123 KDVMDASGVALVLIGPGSV----EQARTFSEQTKFKGEVYADPNHSSYEALSFVS 173 (226)
Q Consensus 123 ~~~l~~~Gv~lVaIs~~~~----~~i~~f~~~~~~pfpll~Dp~~~ly~alGv~~ 173 (226)
.+.++...+.+|.|..|-+ +.+..+|+++++|+-.|.....++-++.|...
T Consensus 25 ~kai~~gkaklViiA~D~~~~~~~~i~~~c~~~~Ip~~~~~~tk~eLG~a~Gk~~ 79 (99)
T PRK01018 25 IKAIKLGKAKLVIVASNCPKDIKEDIEYYAKLSGIPVYEYEGSSVELGTLCGKPF 79 (99)
T ss_pred HHHHHcCCceEEEEeCCCCHHHHHHHHHHHHHcCCCEEEECCCHHHHHHHhCCCC
Confidence 4455667788999998864 46677889999988777778899999999864
No 242
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=55.26 E-value=34 Score=27.72 Aligned_cols=38 Identities=8% Similarity=0.108 Sum_probs=31.4
Q ss_pred HHHHHhHHHHHHcCCEEEEEeCCCHHHHHHHHHHcCCc
Q 027245 117 DYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFK 154 (226)
Q Consensus 117 ~~L~~~~~~l~~~Gv~lVaIs~~~~~~i~~f~~~~~~p 154 (226)
+...+..+++++.|++++.++-|+...+...+++.+++
T Consensus 130 ~~~~~~l~~L~~~Gi~~~i~TGD~~~~a~~~~~~lgi~ 167 (215)
T PF00702_consen 130 PGAKEALQELKEAGIKVAILTGDNESTASAIAKQLGIF 167 (215)
T ss_dssp TTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHHTTSC
T ss_pred hhhhhhhhhhhccCcceeeeeccccccccccccccccc
Confidence 44566677788889999999988888899999999983
No 243
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=55.12 E-value=14 Score=27.67 Aligned_cols=54 Identities=7% Similarity=0.018 Sum_probs=33.3
Q ss_pred CCChhHHHHHHHHHHhHHHHHHcCCEEEEEeCCCHHHHHHHHHHcCCc-eeEEecCChHHHH
Q 027245 107 FGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFK-GEVYADPNHSSYE 167 (226)
Q Consensus 107 ~~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs~~~~~~i~~f~~~~~~p-fpll~Dp~~~ly~ 167 (226)
-.||+|++-.-.|.+. ....+++-|..++.. +.|.+.+.+. .|++.|.+..+++
T Consensus 20 g~cpf~~rvrl~L~eK-----gi~ye~~~vd~~~~p--~~~~~~nP~g~vPvL~~~~~~i~e 74 (91)
T cd03061 20 GNCPFCQRLFMVLWLK-----GVVFNVTTVDMKRKP--EDLKDLAPGTQPPFLLYNGEVKTD 74 (91)
T ss_pred CCChhHHHHHHHHHHC-----CCceEEEEeCCCCCC--HHHHHhCCCCCCCEEEECCEEecC
Confidence 4799999887777654 222345555554422 3466666553 6788887655544
No 244
>PF04278 Tic22: Tic22-like family; InterPro: IPR007378 Chloroplast function requires the import of nuclear encoded proteins from the cytoplasm across the chloroplast double membrane. This is accompished by two protein complexes, the Toc complex located at the outer membrane and the Tic complex loacted at the inner membrane []. The Toc complex recognises specific proteins by a cleavable N-terminal sequence and is primarily responsible for translocation through the outer membrane, while the Tic complex translocates the protein through the inner membrane. This entry represents Tic22, a core member of the Tic complex. It is believed to act as a link between both protein complexes, contacting the translocated protein in the intermembrane space after transport through the Toc complex, and directing it to the Tic complex [].; PDB: 4EV1_A.
Probab=55.10 E-value=15 Score=32.95 Aligned_cols=84 Identities=17% Similarity=0.205 Sum_probs=43.4
Q ss_pred ccCcCCCcEEecCCCCeEeCCCccC-CCeEEEEEecCCCChhHHHHHHHHHHhH----HHHHHcCCEEEEEeCCCHHHH-
Q 027245 71 TKNLLDTVKVYDVNGNAIPISDLWK-DRKAVVAFARHFGCVLCRKRADYLAAKK----DVMDASGVALVLIGPGSVEQA- 144 (226)
Q Consensus 71 ~g~~apdf~L~D~~G~~v~Lsdl~~-~~~vVVvF~R~~~Cp~C~~el~~L~~~~----~~l~~~Gv~lVaIs~~~~~~i- 144 (226)
..+.+|-|.+.|.+|..+-..+--+ ++.+.++|| |++++.++-+.. +++ ..+++|+.|+-+..-++
T Consensus 71 kL~~VPVF~itn~~G~p~l~~~~~~~~~~v~~~F~-------s~~dA~~~L~~lk~~~p~~-~~~~kV~pvsL~~vY~l~ 142 (274)
T PF04278_consen 71 KLAGVPVFTITNSQGEPVLVSGPDQGGKSVGLFFF-------SQQDAEAFLAQLKKSNPEL-ASGAKVVPVSLGKVYQLA 142 (274)
T ss_dssp HHTTSEEEEEE-TT--B-----TTS--SEEEEEES--------HHHHHHHHHHHHH-SSHH-HTT-EEEEEEHHHHHHHH
T ss_pred HhcCceEEEEECCCCCEEEeccCCCCCceEEEEEe-------cHHHHHHHHHHHhhhCccc-cCceEEEEecHHHHHHHH
Confidence 4567899999999999987766311 234555554 666666654432 223 57899999999876444
Q ss_pred HHH-HHHcCCceeEEecCC
Q 027245 145 RTF-SEQTKFKGEVYADPN 162 (226)
Q Consensus 145 ~~f-~~~~~~pfpll~Dp~ 162 (226)
++. .+..++.|.++.|+.
T Consensus 143 ~~~~~k~~~~~F~~vP~~~ 161 (274)
T PF04278_consen 143 QENKKKPEGLQFRFVPDPK 161 (274)
T ss_dssp HHTTT-TT-EEEEEE--HH
T ss_pred HHhhcCCcCceEEEcCCHH
Confidence 222 234457788887764
No 245
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=54.77 E-value=35 Score=28.03 Aligned_cols=50 Identities=12% Similarity=0.221 Sum_probs=38.5
Q ss_pred eEEEEEecCCCChhHHHHHHHHHHhHHHHHHcCCEEEEEeCCCHHHHHHHHHHcCCceeE
Q 027245 98 KAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKGEV 157 (226)
Q Consensus 98 ~vVVvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs~~~~~~i~~f~~~~~~pfpl 157 (226)
..=+++|....|.-|.++++.| +++|.+|=.+..++-+.+++ +.++|.++
T Consensus 25 ~~~~~vyksPnCGCC~~w~~~m-------k~~Gf~Vk~~~~~d~~alK~---~~gIp~e~ 74 (149)
T COG3019 25 ATEMVVYKSPNCGCCDEWAQHM-------KANGFEVKVVETDDFLALKR---RLGIPYEM 74 (149)
T ss_pred eeeEEEEeCCCCccHHHHHHHH-------HhCCcEEEEeecCcHHHHHH---hcCCChhh
Confidence 3456778899999999987655 57899999999998776655 56777654
No 246
>PTZ00106 60S ribosomal protein L30; Provisional
Probab=54.46 E-value=68 Score=24.71 Aligned_cols=51 Identities=16% Similarity=0.093 Sum_probs=39.9
Q ss_pred HHHHHcCCEEEEEeCCCH----HHHHHHHHHcCCceeEEecCChHHHHHcCCccc
Q 027245 124 DVMDASGVALVLIGPGSV----EQARTFSEQTKFKGEVYADPNHSSYEALSFVSG 174 (226)
Q Consensus 124 ~~l~~~Gv~lVaIs~~~~----~~i~~f~~~~~~pfpll~Dp~~~ly~alGv~~~ 174 (226)
..++...+.+|.|..|-+ ..++.+|+.+++|+-.|.+...++-++.|....
T Consensus 35 kalk~gkaklViiA~D~~~~~kkki~~~~~~~~Vpv~~~~~t~~eLG~A~Gk~~r 89 (108)
T PTZ00106 35 KALRNGKAKLVIISNNCPPIRRSEIEYYAMLSKTGVHHYAGNNNDLGTACGRHFR 89 (108)
T ss_pred HHHHcCCeeEEEEeCCCCHHHHHHHHHHHhhcCCCEEEeCCCHHHHHHHhCCccC
Confidence 445556788999988865 356778899999887777888999999997643
No 247
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=51.09 E-value=36 Score=28.44 Aligned_cols=83 Identities=13% Similarity=0.026 Sum_probs=53.1
Q ss_pred cCCCcEEecCCCCeEeCCC--ccCCC-eEEEEEecCCCChhHHHH-HHHHHHhHHHHHHcCC--EEEEEeCC-------C
Q 027245 74 LLDTVKVYDVNGNAIPISD--LWKDR-KAVVAFARHFGCVLCRKR-ADYLAAKKDVMDASGV--ALVLIGPG-------S 140 (226)
Q Consensus 74 ~apdf~L~D~~G~~v~Lsd--l~~~~-~vVVvF~R~~~Cp~C~~e-l~~L~~~~~~l~~~Gv--~lVaIs~~-------~ 140 (226)
-.|++.+.|.. .+++.. |.+.+ +.||+-+=.+-+++=..+ -+++.+..+++++.+. +|+.||-. +
T Consensus 17 ~~P~l~V~si~--~I~~~~~~Lk~~Gik~li~DkDNTL~~~~~~~i~~~~~~~~~~l~~~~~~~~v~IvSNsaGs~~d~~ 94 (168)
T PF09419_consen 17 LLPHLYVPSIR--DIDFEANHLKKKGIKALIFDKDNTLTPPYEDEIPPEYAEWLNELKKQFGKDRVLIVSNSAGSSDDPD 94 (168)
T ss_pred cCCCEEcCChh--hCCcchhhhhhcCceEEEEcCCCCCCCCCcCcCCHHHHHHHHHHHHHCCCCeEEEEECCCCcccCcc
Confidence 45677776654 233444 44333 677777777766444433 3566667777777765 48888886 3
Q ss_pred HHHHHHHHHHcCCceeEE
Q 027245 141 VEQARTFSEQTKFKGEVY 158 (226)
Q Consensus 141 ~~~i~~f~~~~~~pfpll 158 (226)
.++++.+.+.+++|+-..
T Consensus 95 ~~~a~~~~~~lgIpvl~h 112 (168)
T PF09419_consen 95 GERAEALEKALGIPVLRH 112 (168)
T ss_pred HHHHHHHHHhhCCcEEEe
Confidence 578888888888765433
No 248
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=50.37 E-value=20 Score=28.68 Aligned_cols=35 Identities=11% Similarity=0.215 Sum_probs=30.2
Q ss_pred HhHHHHHHcCCEEEEEeCCCHHHHHHHHHHcCCce
Q 027245 121 AKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKG 155 (226)
Q Consensus 121 ~~~~~l~~~Gv~lVaIs~~~~~~i~~f~~~~~~pf 155 (226)
+..+++++.|+.++.||.+....++.+++..+++.
T Consensus 96 e~i~~~~~~~~~v~IvS~~~~~~i~~~~~~~~i~~ 130 (192)
T PF12710_consen 96 ELIRELKDNGIKVVIVSGSPDEIIEPIAERLGIDD 130 (192)
T ss_dssp HHHHHHHHTTSEEEEEEEEEHHHHHHHHHHTTSSE
T ss_pred HHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCCc
Confidence 55556678899999999999899999999999885
No 249
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=49.81 E-value=78 Score=23.01 Aligned_cols=53 Identities=9% Similarity=0.099 Sum_probs=39.0
Q ss_pred hHHHHHHcCCEEEEEeCCCHH----HHHHHHHHcCCceeEEecCChHHHHHcCCcccc
Q 027245 122 KKDVMDASGVALVLIGPGSVE----QARTFSEQTKFKGEVYADPNHSSYEALSFVSGV 175 (226)
Q Consensus 122 ~~~~l~~~Gv~lVaIs~~~~~----~i~~f~~~~~~pfpll~Dp~~~ly~alGv~~~~ 175 (226)
....++...+.+|.|..|.++ .+..+|+++++|+- +.+...++-++.|.....
T Consensus 19 v~kai~~gkaklViiA~D~~~~~~~~i~~~c~~~~Vp~~-~~~s~~eLG~a~G~~~~~ 75 (82)
T PRK13602 19 TVKALKRGSVKEVVVAEDADPRLTEKVEALANEKGVPVS-KVDSMKKLGKACGIEVGA 75 (82)
T ss_pred HHHHHHcCCeeEEEEECCCCHHHHHHHHHHHHHcCCCEE-EECCHHHHHHHHCCCcCE
Confidence 345566677889999888653 55667899999884 445668899998887654
No 250
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=49.47 E-value=27 Score=26.84 Aligned_cols=43 Identities=21% Similarity=0.345 Sum_probs=23.6
Q ss_pred EEEEEecCCCChhHHHHHHHHHHhHHHHHHcCCEEEEEeCCC---HHHHHHHHH
Q 027245 99 AVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGS---VEQARTFSE 149 (226)
Q Consensus 99 vVVvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs~~~---~~~i~~f~~ 149 (226)
.||+|-. +|||+|.. +..|- .+.++...+|-.|. ..+++++..
T Consensus 15 ~VVifSK-s~C~~c~~-~k~ll------~~~~v~~~vvELD~~~~g~eiq~~l~ 60 (104)
T KOG1752|consen 15 PVVIFSK-SSCPYCHR-AKELL------SDLGVNPKVVELDEDEDGSEIQKALK 60 (104)
T ss_pred CEEEEEC-CcCchHHH-HHHHH------HhCCCCCEEEEccCCCCcHHHHHHHH
Confidence 4566655 99999997 43332 22555544444433 235555444
No 251
>COG3769 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=48.26 E-value=23 Score=31.45 Aligned_cols=45 Identities=11% Similarity=0.131 Sum_probs=37.9
Q ss_pred HHHHHHcCCEEEEEeCCCHHHHHHHHHHcCCc-eeEEecCChHHHH
Q 027245 123 KDVMDASGVALVLIGPGSVEQARTFSEQTKFK-GEVYADPNHSSYE 167 (226)
Q Consensus 123 ~~~l~~~Gv~lVaIs~~~~~~i~~f~~~~~~p-fpll~Dp~~~ly~ 167 (226)
+.++++.|+.||.++.-+..++..+.+..+++ -|+++.....+|-
T Consensus 32 ~~el~d~G~~Vi~~SSKT~aE~~~l~~~l~v~~~p~iaEnG~aI~~ 77 (274)
T COG3769 32 LLELKDAGVPVILCSSKTRAEMLYLQKSLGVQGLPLIAENGAAIYL 77 (274)
T ss_pred HHHHHHcCCeEEEeccchHHHHHHHHHhcCCCCCceeecCCceEEe
Confidence 66788899999999999999999999999998 7777776666543
No 252
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=48.24 E-value=92 Score=28.27 Aligned_cols=60 Identities=10% Similarity=0.097 Sum_probs=39.8
Q ss_pred HHHHHHhHHHHHHcCCEEEEE-eCCCHHHHHHHHHHcCCce--eEEec-----CChHHHHHcCCcccc
Q 027245 116 ADYLAAKKDVMDASGVALVLI-GPGSVEQARTFSEQTKFKG--EVYAD-----PNHSSYEALSFVSGV 175 (226)
Q Consensus 116 l~~L~~~~~~l~~~Gv~lVaI-s~~~~~~i~~f~~~~~~pf--pll~D-----p~~~ly~alGv~~~~ 175 (226)
+.+--+.-..+.++|+..|.| +..+.+++++++++...|. .+..- .+-+-.+.+|+.+-.
T Consensus 165 ~deAI~Ra~aY~eAGAD~ifi~~~~~~~~i~~~~~~~~~Pl~~n~~~~~~~p~~s~~~L~~lGv~~v~ 232 (292)
T PRK11320 165 LDAAIERAQAYVEAGADMIFPEAMTELEMYRRFADAVKVPILANITEFGATPLFTTEELASAGVAMVL 232 (292)
T ss_pred HHHHHHHHHHHHHcCCCEEEecCCCCHHHHHHHHHhcCCCEEEEeccCCCCCCCCHHHHHHcCCcEEE
Confidence 334444466677899998877 4466799999999877654 22221 134557788887643
No 253
>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.
Probab=47.76 E-value=31 Score=29.61 Aligned_cols=54 Identities=13% Similarity=-0.003 Sum_probs=42.9
Q ss_pred HHHHHHHHhHHHHHHcCCEEEEEeCCCHHHHHHHHHHcCCcee--EEecCChHHHH
Q 027245 114 KRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKGE--VYADPNHSSYE 167 (226)
Q Consensus 114 ~el~~L~~~~~~l~~~Gv~lVaIs~~~~~~i~~f~~~~~~pfp--ll~Dp~~~ly~ 167 (226)
+..+.+.+..+++.++|+.+|.++--+.+.++.+.++.+.+-| ++++....+|.
T Consensus 21 ~~~~~~~~~i~~~~~~gi~fv~aTGR~~~~~~~~~~~~~~~~p~~~I~~NGa~I~~ 76 (249)
T TIGR01485 21 QALLRLNALLEDHRGEDSLLVYSTGRSPHSYKELQKQKPLLTPDIWVTSVGSEIYY 76 (249)
T ss_pred HHHHHHHHHHHHhhccCceEEEEcCCCHHHHHHHHhcCCCCCCCEEEEcCCceEEe
Confidence 3467888888889999998887777788899999988888777 77766665654
No 254
>PRK07714 hypothetical protein; Provisional
Probab=47.04 E-value=1.2e+02 Score=22.68 Aligned_cols=63 Identities=11% Similarity=0.026 Sum_probs=41.3
Q ss_pred HHHHHHcCCEEEEEeCCCH----HHHHHHHHHcCCceeEEecCChHHHHHcCCccccceeecchhhHH
Q 027245 123 KDVMDASGVALVLIGPGSV----EQARTFSEQTKFKGEVYADPNHSSYEALSFVSGVLVTFTPKAGLK 186 (226)
Q Consensus 123 ~~~l~~~Gv~lVaIs~~~~----~~i~~f~~~~~~pfpll~Dp~~~ly~alGv~~~~~~t~~p~a~~~ 186 (226)
.+.++...+.+|.|..|-. +.+..+|+.+++|+- ......++-.++|........+......+
T Consensus 27 ~~al~~g~~~lViiA~D~s~~~~~ki~~~~~~~~vp~~-~~~sk~eLG~a~Gk~~~~~vai~d~g~a~ 93 (100)
T PRK07714 27 LKEVRSGKAKLVLLSEDASVNTTKKITDKCTYYNVPMR-KVENRQQLGHAIGKDERVVVAVLDEGFAK 93 (100)
T ss_pred HHHHHhCCceEEEEeCCCCHHHHHHHHHHHHhcCCCEE-EeCCHHHHHHHhCCCcceEEEEeCchhHH
Confidence 4455556688888888754 456667788888874 44677889999998644333333443333
No 255
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=46.70 E-value=46 Score=22.28 Aligned_cols=51 Identities=16% Similarity=0.230 Sum_probs=26.8
Q ss_pred EecCCCChhHHHHHHHHHHhHHHHHHcCCE--EEEEeCCCHHHHHHHHHHcCC-ceeEEecCC
Q 027245 103 FARHFGCVLCRKRADYLAAKKDVMDASGVA--LVLIGPGSVEQARTFSEQTKF-KGEVYADPN 162 (226)
Q Consensus 103 F~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~--lVaIs~~~~~~i~~f~~~~~~-pfpll~Dp~ 162 (226)
.|...+||.|++-...|. +.|+. ++-|..+. ....|.+.... ..|++.|.+
T Consensus 3 ly~~~~~~~~~~v~~~l~-------~~gi~~~~~~v~~~~--~~~~~~~~~p~~~vP~l~~~~ 56 (73)
T cd03059 3 LYSGPDDVYSHRVRIVLA-------EKGVSVEIIDVDPDN--PPEDLAELNPYGTVPTLVDRD 56 (73)
T ss_pred EEECCCChhHHHHHHHHH-------HcCCccEEEEcCCCC--CCHHHHhhCCCCCCCEEEECC
Confidence 456778999998655553 34443 33333322 22334444333 356776654
No 256
>TIGR03556 photolyase_8HDF deoxyribodipyrimidine photo-lyase, 8-HDF type. This model describes a narrow clade of cyanobacterial deoxyribodipyrimidine photo-lyase. This group, in contrast to several closely related proteins, uses a chromophore that, in other lineages is modified further to become coenzyme F420. This chromophore is called 8-HDF in most articles on the DNA photolyase and FO in most literature on coenzyme F420.
Probab=46.03 E-value=1.3e+02 Score=28.80 Aligned_cols=63 Identities=17% Similarity=0.158 Sum_probs=43.4
Q ss_pred CeEEEEEecCC---CC----h-hHHHHHHHHHHhHHHHHHcCCEEEEEeCCCHHHHHHHHHHcCCceeEEec
Q 027245 97 RKAVVAFARHF---GC----V-LCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKGEVYAD 160 (226)
Q Consensus 97 ~~vVVvF~R~~---~C----p-~C~~el~~L~~~~~~l~~~Gv~lVaIs~~~~~~i~~f~~~~~~pfpll~D 160 (226)
.+++++|+... +. + --+-.+..|.++.+++++.|+.+++..-+..+.+.++++++++.- |+.+
T Consensus 27 ~~vl~vfi~dp~~~~~~~~~~~r~~Fl~esL~~L~~~L~~~G~~L~v~~G~p~~vl~~l~~~~~~~~-V~~~ 97 (471)
T TIGR03556 27 AKVVGLFCLDPNILQADDMAPARVAYLIGCLQELQQRYQQAGSQLLILQGDPVQLIPQLAQQLGAKA-VYWN 97 (471)
T ss_pred CCEEEEEEEchhhhccccCCHHHHHHHHHHHHHHHHHHHHCCCCeEEEECCHHHHHHHHHHHcCCCE-EEEe
Confidence 46666666542 11 1 123356778888899999999999887677788899999887653 4444
No 257
>TIGR00591 phr2 photolyase PhrII. All proteins in this family for which functions are known are DNA-photolyases used for the direct repair of UV irradiation induced DNA damage. Some repair 6-4 photoproducts while others repair cyclobutane pyrimidine dimers. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=45.98 E-value=1.3e+02 Score=28.54 Aligned_cols=63 Identities=13% Similarity=-0.073 Sum_probs=43.0
Q ss_pred CeEEEEEecCC-C---ChhHHH-HHHHHHHhHHHHHHcCCEEEEEeCCCHHHHHHHHHHcCCceeEEec
Q 027245 97 RKAVVAFARHF-G---CVLCRK-RADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKGEVYAD 160 (226)
Q Consensus 97 ~~vVVvF~R~~-~---Cp~C~~-el~~L~~~~~~l~~~Gv~lVaIs~~~~~~i~~f~~~~~~pfpll~D 160 (226)
.+++.+|+.-. . .+.... -...|.++.+++++.|+.+++...+..+.+.++++++++.- |+.|
T Consensus 53 ~~vl~vyi~dp~~~~~~~~r~~Fl~esL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~i~~-V~~~ 120 (454)
T TIGR00591 53 LPLHVCFCLVDFFLAATRRHYFFMLGGLDEVANECERLIIPFHLLDGPPKELLPYFVDLHAAAA-VVTD 120 (454)
T ss_pred CCEEEEEEeCCCcccccHHHHHHHHHHHHHHHHHHHHcCCceEEeecChHHHHHHHHHHcCCCE-EEEe
Confidence 35666665531 1 122222 34467778889999999999987777788999999987652 5554
No 258
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=45.85 E-value=29 Score=32.09 Aligned_cols=48 Identities=17% Similarity=0.178 Sum_probs=34.4
Q ss_pred CChhHHHHHHHHHHhHHHHHHcCCEEEEEeCCCHHHHHHHHHHcCCceeEEecCC
Q 027245 108 GCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKGEVYADPN 162 (226)
Q Consensus 108 ~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs~~~~~~i~~f~~~~~~pfpll~Dp~ 162 (226)
+|.+.+.+++.+.+.. .+++|++|.--+.+.+++++++++++ .|.|-+
T Consensus 10 G~~~G~~h~~al~~~~-----~~~eLvaV~d~~~erA~~~A~~~gi~--~y~~~e 57 (343)
T TIGR01761 10 GTRFGQFYLAAFAAAP-----ERFELAGILAQGSERSRALAHRLGVP--LYCEVE 57 (343)
T ss_pred eHHHHHHHHHHHHhCC-----CCcEEEEEEcCCHHHHHHHHHHhCCC--ccCCHH
Confidence 3445555666555431 17999999999999999999999875 555544
No 259
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=45.73 E-value=1.1e+02 Score=23.05 Aligned_cols=50 Identities=16% Similarity=0.207 Sum_probs=33.3
Q ss_pred CeEEEEEecCCCChhHHHHHHHHHHhHHHHHHcCCEEEEEeCCCHHHHHHHHHHcCCc
Q 027245 97 RKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFK 154 (226)
Q Consensus 97 ~~vVVvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs~~~~~~i~~f~~~~~~p 154 (226)
+.-+++++-..+. -+++.+..+..++.|+.+|+|..+. .+.+++++.+..
T Consensus 43 ~~dl~I~iS~SG~------t~e~i~~~~~a~~~g~~iI~IT~~~--~l~~~~~~~~~~ 92 (119)
T cd05017 43 RKTLVIAVSYSGN------TEETLSAVEQAKERGAKIVAITSGG--KLLEMAREHGVP 92 (119)
T ss_pred CCCEEEEEECCCC------CHHHHHHHHHHHHCCCEEEEEeCCc--hHHHHHHHcCCc
Confidence 4456666666664 3344445555667899999999765 377788877654
No 260
>cd01821 Rhamnogalacturan_acetylesterase_like Rhamnogalacturan_acetylesterase_like subgroup of SGNH-hydrolases. Rhamnogalacturan acetylesterase removes acetyl esters from rhamnogalacturonan substrates, and renders them susceptible to degradation by rhamnogalacturonases. Rhamnogalacturonans are highly branched regions in pectic polysaccharides, consisting of repeating -(1,2)-L-Rha-(1,4)-D-GalUA disaccharide units, with many rhamnose residues substituted by neutral oligosaccharides such as arabinans, galactans and arabinogalactans. Extracellular enzymes participating in the degradation of plant cell wall polymers, such as Rhamnogalacturonan acetylesterase, would typically be found in saprophytic and plant pathogenic fungi and bacteria.
Probab=45.44 E-value=88 Score=25.43 Aligned_cols=43 Identities=16% Similarity=0.208 Sum_probs=31.8
Q ss_pred HHHHHHHHHhHHHHHHcCCEEEEEeCCC-----------------HHHHHHHHHHcCCce
Q 027245 113 RKRADYLAAKKDVMDASGVALVLIGPGS-----------------VEQARTFSEQTKFKG 155 (226)
Q Consensus 113 ~~el~~L~~~~~~l~~~Gv~lVaIs~~~-----------------~~~i~~f~~~~~~pf 155 (226)
.++...|.+..+.+++.|+.+|.+++-. .+.+++.+++++++|
T Consensus 90 ~~~~~nl~~ii~~~~~~~~~~il~tp~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 149 (198)
T cd01821 90 TTYKEYLRRYIAEARAKGATPILVTPVTRRTFDEGGKVEDTLGDYPAAMRELAAEEGVPL 149 (198)
T ss_pred HHHHHHHHHHHHHHHHCCCeEEEECCccccccCCCCcccccchhHHHHHHHHHHHhCCCE
Confidence 3466667777788888999999887532 246778888888876
No 261
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=44.26 E-value=73 Score=21.42 Aligned_cols=48 Identities=8% Similarity=0.045 Sum_probs=25.0
Q ss_pred ecCCCChhHHHHHHHHHHhHHHHHHcCCE--EEEEeCCCHHHHHHHHHHcCC-ceeEEecC
Q 027245 104 ARHFGCVLCRKRADYLAAKKDVMDASGVA--LVLIGPGSVEQARTFSEQTKF-KGEVYADP 161 (226)
Q Consensus 104 ~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~--lVaIs~~~~~~i~~f~~~~~~-pfpll~Dp 161 (226)
|-..+||+|++-...|. .+|+. .+.+..+... .+.+..+. ..|++.|.
T Consensus 4 y~~~~~p~~~rvr~~L~-------~~gl~~~~~~~~~~~~~---~~~~~~~~~~vP~L~~~ 54 (71)
T cd03037 4 YIYEHCPFCVKARMIAG-------LKNIPVEQIILQNDDEA---TPIRMIGAKQVPILEKD 54 (71)
T ss_pred EecCCCcHhHHHHHHHH-------HcCCCeEEEECCCCchH---HHHHhcCCCccCEEEeC
Confidence 44678999996544443 34443 4444433322 12233322 36788765
No 262
>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase. This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.
Probab=43.19 E-value=1.3e+02 Score=27.24 Aligned_cols=60 Identities=10% Similarity=0.151 Sum_probs=40.8
Q ss_pred HHHHHhHHHHHHcCCEEEEE-eCCCHHHHHHHHHHcCCce--eEEec-----CChHHHHHcCCccccc
Q 027245 117 DYLAAKKDVMDASGVALVLI-GPGSVEQARTFSEQTKFKG--EVYAD-----PNHSSYEALSFVSGVL 176 (226)
Q Consensus 117 ~~L~~~~~~l~~~Gv~lVaI-s~~~~~~i~~f~~~~~~pf--pll~D-----p~~~ly~alGv~~~~~ 176 (226)
.+--+....+.++|+..|.| +..+.+++++++++...|. .++.- .+.+-.+++|+.+-..
T Consensus 165 deaI~Ra~aY~eAGAD~ifi~~~~~~~ei~~~~~~~~~P~~~nv~~~~~~p~~s~~eL~~lG~~~v~~ 232 (294)
T TIGR02319 165 DEAIRRSREYVAAGADCIFLEAMLDVEEMKRVRDEIDAPLLANMVEGGKTPWLTTKELESIGYNLAIY 232 (294)
T ss_pred HHHHHHHHHHHHhCCCEEEecCCCCHHHHHHHHHhcCCCeeEEEEecCCCCCCCHHHHHHcCCcEEEE
Confidence 33334456677899999888 4567899999999976664 23432 2455677888876533
No 263
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B ....
Probab=42.75 E-value=74 Score=27.89 Aligned_cols=75 Identities=15% Similarity=0.135 Sum_probs=45.5
Q ss_pred EEEEecCCCChhHHHHHHHHHHhHHHHHHcCCEEEEEeC-CCHHHHHHHHHHcCCceeEEecC---ChHHHHHcCCccc
Q 027245 100 VVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGP-GSVEQARTFSEQTKFKGEVYADP---NHSSYEALSFVSG 174 (226)
Q Consensus 100 VVvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs~-~~~~~i~~f~~~~~~pfpll~Dp---~~~ly~alGv~~~ 174 (226)
++|.-|-.-...-..-+.+--+.-..+.++|+..|.|-. .+.+++++++++.++|.-+...+ +-+-.+.+|+.+-
T Consensus 138 ~~I~ARTDa~~~~~~~~deaI~R~~aY~eAGAD~ifi~~~~~~~~i~~~~~~~~~Pl~v~~~~~~~~~~eL~~lGv~~v 216 (238)
T PF13714_consen 138 FVIIARTDAFLRAEEGLDEAIERAKAYAEAGADMIFIPGLQSEEEIERIVKAVDGPLNVNPGPGTLSAEELAELGVKRV 216 (238)
T ss_dssp SEEEEEECHHCHHHHHHHHHHHHHHHHHHTT-SEEEETTSSSHHHHHHHHHHHSSEEEEETTSSSS-HHHHHHTTESEE
T ss_pred EEEEEeccccccCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHhcCCCEEEEcCCCCCCHHHHHHCCCcEE
Confidence 555555332111133344444456667789999887755 66788999999998776655532 3445777887664
No 264
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=42.48 E-value=28 Score=23.53 Aligned_cols=57 Identities=12% Similarity=-0.044 Sum_probs=31.6
Q ss_pred EecCCCChhHHHHHHHHHHhHHHHHHcCCEEEEEeCCCH-HHHHHHHHHcCC-ceeEEecCChH
Q 027245 103 FARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSV-EQARTFSEQTKF-KGEVYADPNHS 164 (226)
Q Consensus 103 F~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs~~~~-~~i~~f~~~~~~-pfpll~Dp~~~ 164 (226)
+|...+||.|++-.-.|.+. ....+++-|..... .....|.+.+.. ..|++.|.+..
T Consensus 3 Ly~~~~~~~~~~v~~~l~~~-----gi~~e~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~ 61 (74)
T cd03045 3 LYYLPGSPPCRAVLLTAKAL-----GLELNLKEVNLMKGEHLKPEFLKLNPQHTVPTLVDNGFV 61 (74)
T ss_pred EEeCCCCCcHHHHHHHHHHc-----CCCCEEEEecCccCCcCCHHHHhhCcCCCCCEEEECCEE
Confidence 56678999998644444432 22244555554222 223456666554 47888776543
No 265
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=42.40 E-value=61 Score=21.48 Aligned_cols=55 Identities=16% Similarity=0.093 Sum_probs=30.5
Q ss_pred EecCCCChhHHHHHHHHHHhHHHHHHcCCEEEEEeCCCH-HHHHHHHHHcCC-ceeEEecCC
Q 027245 103 FARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSV-EQARTFSEQTKF-KGEVYADPN 162 (226)
Q Consensus 103 F~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs~~~~-~~i~~f~~~~~~-pfpll~Dp~ 162 (226)
.|...+||.|++-...|.+. ....+++-|..... .....|.+.++. ..|++.+.+
T Consensus 3 Ly~~~~s~~~~~~~~~L~~~-----~l~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~~ 59 (74)
T cd03051 3 LYDSPTAPNPRRVRIFLAEK-----GIDVPLVTVDLAAGEQRSPEFLAKNPAGTVPVLELDD 59 (74)
T ss_pred EEeCCCCcchHHHHHHHHHc-----CCCceEEEeecccCccCCHHHHhhCCCCCCCEEEeCC
Confidence 56678999999866655543 22234455543221 122346555544 468876443
No 266
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=42.28 E-value=43 Score=28.64 Aligned_cols=39 Identities=15% Similarity=0.132 Sum_probs=32.8
Q ss_pred HHHHHhHHHHHHcCCEEEEEeCCCHHHHHHHHHHcCCce
Q 027245 117 DYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKG 155 (226)
Q Consensus 117 ~~L~~~~~~l~~~Gv~lVaIs~~~~~~i~~f~~~~~~pf 155 (226)
+...+..+.+++.|.+++.||.+...-++..+++.++.+
T Consensus 80 ~ga~elv~~lk~~G~~v~iiSgg~~~lv~~ia~~lg~d~ 118 (212)
T COG0560 80 PGAEELVAALKAAGAKVVIISGGFTFLVEPIAERLGIDY 118 (212)
T ss_pred ccHHHHHHHHHHCCCEEEEEcCChHHHHHHHHHHhCCch
Confidence 344455677889999999999999999999999999875
No 267
>PHA03398 viral phosphatase superfamily protein; Provisional
Probab=41.55 E-value=58 Score=29.89 Aligned_cols=52 Identities=19% Similarity=0.195 Sum_probs=41.2
Q ss_pred HHHHHhHHHHHHcCCEEEEEeCCCHHHHHHHHHHcCCc--eeEEecCChHHHHH
Q 027245 117 DYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFK--GEVYADPNHSSYEA 168 (226)
Q Consensus 117 ~~L~~~~~~l~~~Gv~lVaIs~~~~~~i~~f~~~~~~p--fpll~Dp~~~ly~a 168 (226)
+...+..++++++|..+..++.++.+.+....+..+++ |+++.-.+...++.
T Consensus 151 p~V~EtL~eLkekGikLaIvTNg~Re~v~~~Le~lgL~~yFDvII~~g~i~~k~ 204 (303)
T PHA03398 151 PFVYDSLDELKERGCVLVLWSYGNREHVVHSLKETKLEGYFDIIICGGRKAGEY 204 (303)
T ss_pred hhHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHcCCCccccEEEECCCccccc
Confidence 56777888899999999999999888899999999987 56555555555444
No 268
>cd00860 ThrRS_anticodon ThrRS Threonyl-anticodon binding domain. ThrRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=41.55 E-value=1.2e+02 Score=21.09 Aligned_cols=47 Identities=6% Similarity=0.041 Sum_probs=34.1
Q ss_pred HHHHhHHHHHHcCCEEEEE-eCCCHHHHHHHHHHcCCceeEEecCChH
Q 027245 118 YLAAKKDVMDASGVALVLI-GPGSVEQARTFSEQTKFKGEVYADPNHS 164 (226)
Q Consensus 118 ~L~~~~~~l~~~Gv~lVaI-s~~~~~~i~~f~~~~~~pfpll~Dp~~~ 164 (226)
...+....+.+.|+.+..- ...+....-+++++.|+++-++.+.+..
T Consensus 16 ~a~~~~~~Lr~~g~~v~~d~~~~~~~~~~~~a~~~g~~~~iiig~~e~ 63 (91)
T cd00860 16 YAKEVAKKLSDAGIRVEVDLRNEKLGKKIREAQLQKIPYILVVGDKEV 63 (91)
T ss_pred HHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHcCCCEEEEECcchh
Confidence 3444567777889988763 4445567777889999999999886654
No 269
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=41.31 E-value=73 Score=25.87 Aligned_cols=34 Identities=12% Similarity=0.112 Sum_probs=28.0
Q ss_pred HhHHHHHHcCCEEEEEeCCCHHHHHHHHHHcCCc
Q 027245 121 AKKDVMDASGVALVLIGPGSVEQARTFSEQTKFK 154 (226)
Q Consensus 121 ~~~~~l~~~Gv~lVaIs~~~~~~i~~f~~~~~~p 154 (226)
+..+.+++.|..++.|+.+....++.+++..+++
T Consensus 94 ~~l~~l~~~g~~v~ivS~s~~~~v~~~~~~lg~~ 127 (202)
T TIGR01490 94 DLIRWHKAEGHTIVLVSASLTILVKPLARILGID 127 (202)
T ss_pred HHHHHHHHCCCEEEEEeCCcHHHHHHHHHHcCCc
Confidence 3345567889999999998888899999988876
No 270
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=40.77 E-value=31 Score=29.04 Aligned_cols=39 Identities=15% Similarity=0.189 Sum_probs=24.2
Q ss_pred CCeEEEEEecCCCChhHHHHHHHH---HHhHHHHHHcCCEEEEE
Q 027245 96 DRKAVVAFARHFGCVLCRKRADYL---AAKKDVMDASGVALVLI 136 (226)
Q Consensus 96 ~~~vVVvF~R~~~Cp~C~~el~~L---~~~~~~l~~~Gv~lVaI 136 (226)
+++. |+.|..+.||+|...-+.| ....+.+ ..++.++-+
T Consensus 37 ~~~~-VvEffdy~CphC~~~~~~l~~~~~~~~~~-~~~v~~~~~ 78 (207)
T PRK10954 37 GEPQ-VLEFFSFYCPHCYQFEEVYHVSDNVKKKL-PEGTKMTKY 78 (207)
T ss_pred CCCe-EEEEeCCCCccHHHhcccccchHHHHHhC-CCCCeEEEe
Confidence 3444 5667789999999877655 3444444 345555543
No 271
>TIGR01684 viral_ppase viral phosphatase. These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.
Probab=40.01 E-value=89 Score=28.66 Aligned_cols=43 Identities=14% Similarity=0.148 Sum_probs=36.5
Q ss_pred HHHHHhHHHHHHcCCEEEEEeCCCHHHHHHHHHHcCCc--eeEEe
Q 027245 117 DYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFK--GEVYA 159 (226)
Q Consensus 117 ~~L~~~~~~l~~~Gv~lVaIs~~~~~~i~~f~~~~~~p--fpll~ 159 (226)
+...+..++++++|+.+..++.+..+.+.+..++.++. |+++.
T Consensus 149 PgV~EaL~~LkekGikLaIaTS~~Re~v~~~L~~lGLd~YFdvII 193 (301)
T TIGR01684 149 PRIYDSLTELKKRGCILVLWSYGDRDHVVESMRKVKLDRYFDIII 193 (301)
T ss_pred HHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHcCCCcccCEEE
Confidence 57778889999999999999999998999999999998 55433
No 272
>PF10740 DUF2529: Protein of unknown function (DUF2529); InterPro: IPR019676 This entry represents a protein family conserved in the Bacillales. Their function is not known. ; PDB: 3JX9_A.
Probab=40.00 E-value=56 Score=27.57 Aligned_cols=82 Identities=13% Similarity=0.159 Sum_probs=30.5
Q ss_pred cCcCCCcEEecCCCCeEeCCCccCCCeEEEEEecCCCChhHHHHHHHHHHhHHHHHHcCCEEEEEe-CCCH-HHHHHHHH
Q 027245 72 KNLLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIG-PGSV-EQARTFSE 149 (226)
Q Consensus 72 g~~apdf~L~D~~G~~v~Lsdl~~~~~vVVvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs-~~~~-~~i~~f~~ 149 (226)
-+++|...-.+.+... ++++ ..---|++|-|...-. ++ .+..+++.+.|+.+|+|+ ..+. +.+..++.
T Consensus 60 ~E~l~~~k~l~~~~~~--~~~l-t~~DRVllfs~~~~~~----e~---~~~a~~L~~~gi~~v~Vs~~~~~~~~l~~~~~ 129 (172)
T PF10740_consen 60 AEPLPSAKRLSEDLEN--FDEL-TETDRVLLFSPFSTDE----EA---VALAKQLIEQGIPFVGVSPNKPDEEDLEDLAD 129 (172)
T ss_dssp TT--TTEEE--TT-----------TT-EEEEEES-S--H----HH---HHHHHHHHHHT--EEEEE-SS---TTGGG-SS
T ss_pred CCCCchhhcCcccccc--cccc-cccceEEEEeCCCCCH----HH---HHHHHHHHHCCCCEEEEEecCCCCCchhhhhh
Confidence 3456666655533321 2222 1223466675554432 22 334556678999999999 2221 12222221
Q ss_pred ---HcCCceeEEecCCh
Q 027245 150 ---QTKFKGEVYADPNH 163 (226)
Q Consensus 150 ---~~~~pfpll~Dp~~ 163 (226)
.++++-|++.|+++
T Consensus 130 ~~Idl~~~~~LvP~EdG 146 (172)
T PF10740_consen 130 VHIDLKLPKPLVPTEDG 146 (172)
T ss_dssp S-EE----S-SEE-TTS
T ss_pred heeecccCCCcccCCCC
Confidence 23567788888885
No 273
>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.
Probab=39.86 E-value=56 Score=25.77 Aligned_cols=37 Identities=11% Similarity=0.071 Sum_probs=30.0
Q ss_pred HHHHhHHHHHHcCCEEEEEeCCCHHHHHHHHHHcCCc
Q 027245 118 YLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFK 154 (226)
Q Consensus 118 ~L~~~~~~l~~~Gv~lVaIs~~~~~~i~~f~~~~~~p 154 (226)
.+.+..+.+++.|..+++|+.+....++.+.+.+++.
T Consensus 77 g~~~~l~~l~~~g~~~~ivS~~~~~~i~~~~~~~g~~ 113 (177)
T TIGR01488 77 GARELISWLKERGIDTVIVSGGFDFFVEPVAEKLGID 113 (177)
T ss_pred CHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCc
Confidence 3444566777899999999999888899999988875
No 274
>TIGR03609 S_layer_CsaB polysaccharide pyruvyl transferase CsaB. The CsaB protein (cell surface anchoring B) of Bacillus anthracis adds a pyruvoyl group to peptidoglycan-associated polysaccharide. This addition is required for proteins with an S-layer homology domain (pfam00395) to bind. Within the larger group of proteins described by Pfam model pfam04230, this model represents a distinct clade that nearly exactly follows the phylogenetic distribution of the S-layer homology domain (pfam00395).
Probab=39.47 E-value=2.1e+02 Score=25.05 Aligned_cols=61 Identities=20% Similarity=0.134 Sum_probs=35.9
Q ss_pred CeEEEEEecCCCChhHHHHHHHHHHhHHHHHH-cCCEEEEEeCC---CHHHHHHHHHHcCCceeEE
Q 027245 97 RKAVVAFARHFGCVLCRKRADYLAAKKDVMDA-SGVALVLIGPG---SVEQARTFSEQTKFKGEVY 158 (226)
Q Consensus 97 ~~vVVvF~R~~~Cp~C~~el~~L~~~~~~l~~-~Gv~lVaIs~~---~~~~i~~f~~~~~~pfpll 158 (226)
++.|.+.+|. |...-.++...+.+..+++.+ .|.+|+.|... |.+..++..++..-+-.++
T Consensus 172 ~~~i~i~~r~-~~~~~~~~~~~l~~~l~~l~~~~g~~v~~i~~~~~~D~~~~~~l~~~~~~~~~i~ 236 (298)
T TIGR03609 172 EPVIVVSLRP-WPLLDVSRLLRLLRALDRLQRDTGAFVLFLPFQQPQDLPLARALRDQLLGPAEVL 236 (298)
T ss_pred CCeEEEEECC-CCcCCHHHHHHHHHHHHHHHHhhCCeEEEEeCCcchhHHHHHHHHHhcCCCcEEE
Confidence 4566666654 544456677788887777754 49888888753 3334444444433233344
No 275
>PRK10200 putative racemase; Provisional
Probab=38.83 E-value=61 Score=27.99 Aligned_cols=43 Identities=12% Similarity=0.156 Sum_probs=32.2
Q ss_pred HHHHHHHhHHHHHHcCCEEEEEeCCCHHH-HHHHHHHcCCceeEEe
Q 027245 115 RADYLAAKKDVMDASGVALVLIGPGSVEQ-ARTFSEQTKFKGEVYA 159 (226)
Q Consensus 115 el~~L~~~~~~l~~~Gv~lVaIs~~~~~~-i~~f~~~~~~pfpll~ 159 (226)
-.+.|.+..+.|++.|+++|+|.|.+... .+...++.+ .|++.
T Consensus 60 ~~~~l~~~~~~L~~~g~~~iviaCNTah~~~~~l~~~~~--iPii~ 103 (230)
T PRK10200 60 TGDILAEAALGLQRAGAEGIVLCTNTMHKVADAIESRCS--LPFLH 103 (230)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECCchHHHHHHHHHHhCC--CCEee
Confidence 46788888889999999999999999753 445555544 55554
No 276
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=37.79 E-value=64 Score=26.81 Aligned_cols=48 Identities=8% Similarity=0.117 Sum_probs=38.9
Q ss_pred HHhHHHHHHcCCEEEEEeCCCHHHHHHHHHHcCCc-eeEEecCChHHHH
Q 027245 120 AAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFK-GEVYADPNHSSYE 167 (226)
Q Consensus 120 ~~~~~~l~~~Gv~lVaIs~~~~~~i~~f~~~~~~p-fpll~Dp~~~ly~ 167 (226)
.+...+++++|+.++.++--+...++.+.+..++. .++++.....+|.
T Consensus 22 ~~~l~~l~~~gi~~~i~TgR~~~~~~~~~~~l~~~~~~~I~~NGa~i~~ 70 (221)
T TIGR02463 22 APWLTRLQEAGIPVILCTSKTAAEVEYLQKALGLTGDPYIAENGAAIHL 70 (221)
T ss_pred HHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCCCCcEEEeCCcEEEc
Confidence 34556677899999999999999999999999987 6788777776664
No 277
>KOG1615 consensus Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=37.70 E-value=80 Score=27.55 Aligned_cols=47 Identities=19% Similarity=0.203 Sum_probs=37.6
Q ss_pred HHHhHHHHHHcCCEEEEEeCCCHHHHHHHHHHcCCce------eEEecCChHH
Q 027245 119 LAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKG------EVYADPNHSS 165 (226)
Q Consensus 119 L~~~~~~l~~~Gv~lVaIs~~~~~~i~~f~~~~~~pf------pll~Dp~~~l 165 (226)
+.++-..|++.|++|+.||-+=...+..-+++.++|+ .++.|.+++.
T Consensus 93 i~eLv~~L~~~~~~v~liSGGF~~~i~~Va~~Lgi~~~n~yAN~l~fd~~Gk~ 145 (227)
T KOG1615|consen 93 IRELVSRLHARGTQVYLISGGFRQLIEPVAEQLGIPKSNIYANELLFDKDGKY 145 (227)
T ss_pred HHHHHHHHHHcCCeEEEEcCChHHHHHHHHHHhCCcHhhhhhheeeeccCCcc
Confidence 3445567789999999999998888888889999998 4666766664
No 278
>cd01453 vWA_transcription_factor_IIH_type Transcription factors IIH type: TFIIH is a multiprotein complex that is one of the five general transcription factors that binds RNA polymerase II holoenzyme. Orthologues of these genes are found in all completed eukaryotic genomes and all these proteins contain a VWA domain. The p44 subunit of TFIIH functions as a DNA helicase in RNA polymerase II transcription initiation and DNA repair, and its transcriptional activity is dependent on its C-terminal Zn-binding domains. The function of the vWA domain is unclear, but may be involved in complex assembly. The MIDAS motif is not conserved in this sub-group.
Probab=37.48 E-value=1.7e+02 Score=24.04 Aligned_cols=43 Identities=14% Similarity=0.162 Sum_probs=31.8
Q ss_pred HHhHHHHHHcCCEEEEEeCCCH-HHHHHHHHHcCCceeEEecCC
Q 027245 120 AAKKDVMDASGVALVLIGPGSV-EQARTFSEQTKFKGEVYADPN 162 (226)
Q Consensus 120 ~~~~~~l~~~Gv~lVaIs~~~~-~~i~~f~~~~~~pfpll~Dp~ 162 (226)
.+..+++++.|++|.+|+.++. +.+++.++.+|=.|-...|++
T Consensus 126 ~~~~~~l~~~~I~v~~IgiG~~~~~L~~ia~~tgG~~~~~~~~~ 169 (183)
T cd01453 126 YETIDKLKKENIRVSVIGLSAEMHICKEICKATNGTYKVILDET 169 (183)
T ss_pred HHHHHHHHHcCcEEEEEEechHHHHHHHHHHHhCCeeEeeCCHH
Confidence 3446667788999988888754 568899999887666666664
No 279
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=37.29 E-value=1.9e+02 Score=26.10 Aligned_cols=58 Identities=7% Similarity=0.142 Sum_probs=39.4
Q ss_pred HHHHHhHHHHHHcCCEEEEEe--CCCHHHHHHHHHHcCC---ceeEEecC------ChHHHHHcCCccc
Q 027245 117 DYLAAKKDVMDASGVALVLIG--PGSVEQARTFSEQTKF---KGEVYADP------NHSSYEALSFVSG 174 (226)
Q Consensus 117 ~~L~~~~~~l~~~Gv~lVaIs--~~~~~~i~~f~~~~~~---pfpll~Dp------~~~ly~alGv~~~ 174 (226)
.+--+....+.++|+..|.|- ..+.+++++++++..- +.|++.-+ +-+-.+++|+.+-
T Consensus 169 ~eAi~Ra~ay~eAGAD~ifv~~~~~~~~ei~~~~~~~~~~~p~~pl~~~~~~~~~~~~~eL~~lG~~~v 237 (285)
T TIGR02320 169 EDALKRAEAYAEAGADGIMIHSRKKDPDEILEFARRFRNHYPRTPLVIVPTSYYTTPTDEFRDAGISVV 237 (285)
T ss_pred HHHHHHHHHHHHcCCCEEEecCCCCCHHHHHHHHHHhhhhCCCCCEEEecCCCCCCCHHHHHHcCCCEE
Confidence 333444566678999999886 4678899999998754 34544422 4556778888774
No 280
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=37.25 E-value=2.2e+02 Score=22.99 Aligned_cols=83 Identities=10% Similarity=0.089 Sum_probs=46.5
Q ss_pred HHHHHhHHHHHHcCCEEEEEeCCC-HHHHHHHHHHcCCceeE-EecCChHH----HHHcCCccccceeecchhhHHHHHH
Q 027245 117 DYLAAKKDVMDASGVALVLIGPGS-VEQARTFSEQTKFKGEV-YADPNHSS----YEALSFVSGVLVTFTPKAGLKIIQS 190 (226)
Q Consensus 117 ~~L~~~~~~l~~~Gv~lVaIs~~~-~~~i~~f~~~~~~pfpl-l~Dp~~~l----y~alGv~~~~~~t~~p~a~~~~~~~ 190 (226)
+.+.+..+++++.|..++.++..+ ...++.+.+..++.+-. ..-|+..+ .+.+|+.......+.-.....+..+
T Consensus 46 pgv~e~L~~Lk~~g~~l~I~Sn~~~~~~~~~~~~~~gl~~~~~~~KP~p~~~~~~l~~~~~~~~~~l~IGDs~~~Di~aA 125 (170)
T TIGR01668 46 PALRDWIEELKAAGRKLLIVSNNAGEQRAKAVEKALGIPVLPHAVKPPGCAFRRAHPEMGLTSEQVAVVGDRLFTDVMGG 125 (170)
T ss_pred hhHHHHHHHHHHcCCEEEEEeCCchHHHHHHHHHHcCCEEEcCCCCCChHHHHHHHHHcCCCHHHEEEECCcchHHHHHH
Confidence 455667788888999999998887 46667777777765321 11244333 4456654433222322222344445
Q ss_pred HHhhhcccc
Q 027245 191 YMEGYRQDW 199 (226)
Q Consensus 191 ~~~G~r~~w 199 (226)
...|+...|
T Consensus 126 ~~aGi~~i~ 134 (170)
T TIGR01668 126 NRNGSYTIL 134 (170)
T ss_pred HHcCCeEEE
Confidence 445555444
No 281
>TIGR02765 crypto_DASH cryptochrome, DASH family. Photolyases and cryptochromes are related flavoproteins. Photolyases harness the energy of blue light to repair DNA damage by removing pyrimidine dimers. Cryptochromes do not repair DNA and are presumed to act instead in some other (possibly unknown) process such as entraining circadian rhythms. This model describes the cryptochrome DASH subfamily, one of at least five major subfamilies, which is found in plants, animals, marine bacteria, etc. Members of this family bind both folate and FAD. They may show weak photolyase activity in vitro but have not been shown to affect DNA repair in vivo. Rather, DASH family cryptochromes have been shown to bind RNA (Vibrio cholerae VC1814), or DNA, and seem likely to act in light-responsive regulatory processes.
Probab=37.18 E-value=94 Score=29.14 Aligned_cols=47 Identities=9% Similarity=0.128 Sum_probs=37.0
Q ss_pred HHHHHHHhHHHHHHcCCEEEEEeCCCHHHHHHHHHHcCCceeEEecCC
Q 027245 115 RADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKGEVYADPN 162 (226)
Q Consensus 115 el~~L~~~~~~l~~~Gv~lVaIs~~~~~~i~~f~~~~~~pfpll~Dp~ 162 (226)
.+..|.++.+++++.|+.+++...+..+.+.++++++++. .|+.|.+
T Consensus 59 l~esL~~L~~~L~~~g~~L~v~~G~~~~vl~~L~~~~~~~-~V~~~~~ 105 (429)
T TIGR02765 59 LLESLKDLRTSLRKLGSDLLVRSGKPEDVLPELIKELGVR-TVFLHQE 105 (429)
T ss_pred HHHHHHHHHHHHHHcCCCeEEEeCCHHHHHHHHHHHhCCC-EEEEecc
Confidence 3467888889999999999988777778899999998764 3666643
No 282
>PF11360 DUF3110: Protein of unknown function (DUF3110); InterPro: IPR021503 This family of proteins has no known function.
Probab=36.34 E-value=1.1e+02 Score=22.75 Aligned_cols=64 Identities=17% Similarity=0.248 Sum_probs=37.9
Q ss_pred CCCeEeCCCccCCCeEEEEEecCCCChhHHHHHHHHHHhHHHHHHcCCEEEEEeCCCHHHHHHHHHHcCCceeEEe
Q 027245 84 NGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKGEVYA 159 (226)
Q Consensus 84 ~G~~v~Lsdl~~~~~vVVvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs~~~~~~i~~f~~~~~~pfpll~ 159 (226)
++..+++.. +++.+|++|= .-.+=.+....|++.+...-.|-.=+.+.+..||++.|+.+.|+.
T Consensus 12 ~eGI~si~~--~~~~~Vl~FE----------~edDA~RYa~lLEAqd~~~p~Ve~id~~~i~~fC~~~gy~~~iv~ 75 (86)
T PF11360_consen 12 TEGIYSIQN--KDRNVVLMFE----------DEDDAERYAGLLEAQDFPDPTVEEIDPEEIEEFCRSAGYEYEIVP 75 (86)
T ss_pred CCcEEEEEe--CCCCEEEEEc----------cHHHHHHHHHHHHhcCCCCCCeEEECHHHHHHHHHHCCceEEEEC
Confidence 445666653 3467888882 222222333334444444334444466789999999999888764
No 283
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=36.19 E-value=39 Score=24.30 Aligned_cols=54 Identities=17% Similarity=0.054 Sum_probs=29.6
Q ss_pred EEEecCCCChhHHHHHHHHHHhHHHHHHcCCEEEEEeCCCHHHHHHHHHHcCC-ceeEEecC
Q 027245 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKF-KGEVYADP 161 (226)
Q Consensus 101 VvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs~~~~~~i~~f~~~~~~-pfpll~Dp 161 (226)
+.+|....||.|++-...|.+.- ...+++-|..... -+.|.+.++. ..|++.|.
T Consensus 19 ~~Ly~~~~sp~~~kv~~~L~~~g-----l~~~~~~v~~~~~--~~~~~~~np~~~vPvL~~~ 73 (89)
T cd03055 19 IRLYSMRFCPYAQRARLVLAAKN-----IPHEVININLKDK--PDWFLEKNPQGKVPALEID 73 (89)
T ss_pred EEEEeCCCCchHHHHHHHHHHcC-----CCCeEEEeCCCCC--cHHHHhhCCCCCcCEEEEC
Confidence 44556778999997655554431 2234444443321 1335555443 47888765
No 284
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=35.74 E-value=1.8e+02 Score=26.30 Aligned_cols=58 Identities=12% Similarity=0.090 Sum_probs=38.6
Q ss_pred HHHHHhHHHHHHcCCEEEEEe-CCCHHHHHHHHHHcCCcee--EEec-----CChHHHHHcCCccc
Q 027245 117 DYLAAKKDVMDASGVALVLIG-PGSVEQARTFSEQTKFKGE--VYAD-----PNHSSYEALSFVSG 174 (226)
Q Consensus 117 ~~L~~~~~~l~~~Gv~lVaIs-~~~~~~i~~f~~~~~~pfp--ll~D-----p~~~ly~alGv~~~ 174 (226)
.+--+....+.++|+..|.|- ..+.+++++++++...|.. ++.- .+.+-.+++|+.+-
T Consensus 161 deAI~Ra~ay~~AGAD~vfi~g~~~~e~i~~~~~~i~~Pl~~n~~~~~~~p~~s~~eL~~lGv~~v 226 (285)
T TIGR02317 161 DAAIERAKAYVEAGADMIFPEALTSLEEFRQFAKAVKVPLLANMTEFGKTPLFTADELREAGYKMV 226 (285)
T ss_pred HHHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHhcCCCEEEEeccCCCCCCCCHHHHHHcCCcEE
Confidence 333344566778999988874 4567899999999776542 2211 13455778888764
No 285
>PF01206 TusA: Sulfurtransferase TusA; InterPro: IPR001455 SirA functions as a response regulator as part of a two-component system, where BarA is the sensor kinase. This system increases the expression of virulence genes and decreases the expression of motility genes []. BarA phosphorylates SirA, thereby activating the protein. Phosphorylated SirA directly activates virulence expression by interacting with hilA and hilC promoters, while repressing the flagellar regulon indirectly by binding to the csrB promoter, which in turn affects flagellar gene expression. Orthologues of SirA from Salmonella spp. can be found throughout proteobacteria, such as GacA in Psuedomonas spp., VarA in Vibrio cholerae, ExpA in Erwinia carotovora, LetA in Legionella pneumophila, and UvrY in Escherichia coli []. A sensor kinase for SirA is present in each of these organisms as well; the sensor kinase is known as BarA in E. coli and Salmonella spp., but has different names in other genera. In different species, SirA/BarA orthologues are required for virulence gene expression, exoenzyme and antibiotic production, motility, and biofilm formation. The structure of SirA consists of an alpha/beta sandwich with a beta-alpha-beta-alpha-beta(2) fold, comprising a mixed four-stranded beta-sheet stacked against two alpha-helices, both of which are nearly parallel to the strands of the beta-sheet []. Several uncharacterised bacterial proteins (73 to 81 amino-acid residues in length) that contain a well-conserved region in their N-terminal region show structural similarity to the SirA protein, including the E. coli protein YedF (P0AA31 from SWISSPROT), and other members of the UPF0033 family.; GO: 0016783 sulfurtransferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 3LVJ_D 3LVK_B 1DCJ_A 3HZ7_A 1JDQ_A 1JE3_A 1PAV_A.
Probab=35.68 E-value=1.4e+02 Score=20.25 Aligned_cols=56 Identities=13% Similarity=0.167 Sum_probs=34.1
Q ss_pred EEEecCCCChhHHHHHHHHHHhHHHHHHcCCEEEEEeCCCH--HHHHHHHHHcCCceeEEec
Q 027245 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSV--EQARTFSEQTKFKGEVYAD 160 (226)
Q Consensus 101 VvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs~~~~--~~i~~f~~~~~~pfpll~D 160 (226)
.+..|+.-||...-.+ .+..+++ +.|-.+.++.-+.. +.+..|++++|+.+--..+
T Consensus 2 ~lD~rg~~CP~Pll~~---~~~l~~l-~~G~~l~v~~d~~~~~~di~~~~~~~g~~~~~~~~ 59 (70)
T PF01206_consen 2 TLDLRGLSCPMPLLKA---KKALKEL-PPGEVLEVLVDDPAAVEDIPRWCEENGYEVVEVEE 59 (70)
T ss_dssp EEECSS-STTHHHHHH---HHHHHTS-GTT-EEEEEESSTTHHHHHHHHHHHHTEEEEEEEE
T ss_pred EEeCCCCCCCHHHHHH---HHHHHhc-CCCCEEEEEECCccHHHHHHHHHHHCCCEEEEEEE
Confidence 3567889999875432 2223333 24655655555543 6799999999987655544
No 286
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=35.49 E-value=2.5e+02 Score=22.99 Aligned_cols=82 Identities=15% Similarity=0.110 Sum_probs=48.8
Q ss_pred HHHHhHHHHHHcCCEEEEEeCCCHHHHHHHHHHcCCc--ee--EEec------CCh----HHHHHcCCccccceeecchh
Q 027245 118 YLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFK--GE--VYAD------PNH----SSYEALSFVSGVLVTFTPKA 183 (226)
Q Consensus 118 ~L~~~~~~l~~~Gv~lVaIs~~~~~~i~~f~~~~~~p--fp--ll~D------p~~----~ly~alGv~~~~~~t~~p~a 183 (226)
.+.+..+++++.|+.+.+|+..+...+....+..++. |+ +.+| |+. .+.+.+|+...-...+ ..+
T Consensus 98 g~~~~L~~L~~~g~~~~i~Tn~~~~~~~~~l~~~~l~~~f~~i~~~~~~~~~KP~~~~~~~~~~~~~~~~~~~~~i-gDs 176 (221)
T TIGR02253 98 GVRDTLMELRESGYRLGIITDGLPVKQWEKLERLGVRDFFDAVITSEEEGVEKPHPKIFYAALKRLGVKPEEAVMV-GDR 176 (221)
T ss_pred CHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHhCChHHhccEEEEeccCCCCCCCHHHHHHHHHHcCCChhhEEEE-CCC
Confidence 4455667788899999999999887777778887764 43 2232 333 3455677654322222 233
Q ss_pred h-HHHHHHHHhhhccccc
Q 027245 184 G-LKIIQSYMEGYRQDWK 200 (226)
Q Consensus 184 ~-~~~~~~~~~G~r~~w~ 200 (226)
. ..+..+...|++..|-
T Consensus 177 ~~~di~~A~~aG~~~i~~ 194 (221)
T TIGR02253 177 LDKDIKGAKNLGMKTVWI 194 (221)
T ss_pred hHHHHHHHHHCCCEEEEE
Confidence 3 3444444466665553
No 287
>COG4469 CoiA Competence protein CoiA-like family, contains a predicted nuclease domain [General function prediction only]
Probab=35.46 E-value=8.9 Score=35.51 Aligned_cols=34 Identities=18% Similarity=0.385 Sum_probs=25.0
Q ss_pred cEEecCCCCeEeCCCccCCCeEEEEEecCCCChhHHHHH
Q 027245 78 VKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRA 116 (226)
Q Consensus 78 f~L~D~~G~~v~Lsdl~~~~~vVVvF~R~~~Cp~C~~el 116 (226)
++..|.+|++|.+-+.+.+. +.- .++||.|..++
T Consensus 2 ltA~~~ngq~v~ll~~~~k~--~~~---~ffCPaC~~~l 35 (342)
T COG4469 2 LTAKDENGQTVNLLTALQKT--QLQ---RFFCPACGSQL 35 (342)
T ss_pred ceeecCCCCEEEehhhHHHh--hhh---ccccCCCCCee
Confidence 57889999999998765332 222 48899998765
No 288
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=35.15 E-value=1.3e+02 Score=24.42 Aligned_cols=103 Identities=14% Similarity=0.063 Sum_probs=55.2
Q ss_pred CCeEEEEEecCCCChhHHHHHHHHHHhHHHHHHcCCEEEEEeCCCHHHHHHHHHHcCCceeEEec-CChHHHHHcCCccc
Q 027245 96 DRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKGEVYAD-PNHSSYEALSFVSG 174 (226)
Q Consensus 96 ~~~vVVvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs~~~~~~i~~f~~~~~~pfpll~D-p~~~ly~alGv~~~ 174 (226)
+.++||+-|-+.|.|.|.+.=.-|.+..++++ .-+.+.+|..+......++-+-+ -|+.+..= .++.+.--||-...
T Consensus 19 ~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~-~~a~IY~vDi~~Vpdfn~~yel~-dP~tvmFF~rnkhm~vD~Gtgnn 96 (133)
T PF02966_consen 19 EDRVVVIRFGRDWDPVCMQMDEILYKIAEKVK-NFAVIYLVDIDEVPDFNQMYELY-DPCTVMFFFRNKHMMVDFGTGNN 96 (133)
T ss_dssp SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHT-TTEEEEEEETTTTHCCHHHTTS--SSEEEEEEETTEEEEEESSSSSS
T ss_pred CceEEEEEeCCCCCccHHHHHHHHHHHHHHhh-cceEEEEEEcccchhhhcccccC-CCeEEEEEecCeEEEEEecCCCc
Confidence 45799999999999999976556666666554 44778888887654332222222 34443322 22222222332221
Q ss_pred --cceeec-chhhHHHHHHHHhhhccccc
Q 027245 175 --VLVTFT-PKAGLKIIQSYMEGYRQDWK 200 (226)
Q Consensus 175 --~~~t~~-p~a~~~~~~~~~~G~r~~w~ 200 (226)
..+.+. -...-.++..+.+|.+.+..
T Consensus 97 nKin~~~~~kqe~iDiie~iyrga~kGk~ 125 (133)
T PF02966_consen 97 NKINWAFEDKQEFIDIIETIYRGARKGKG 125 (133)
T ss_dssp SSBCS--SCHHHHHHHHHHHHHHHHTT-S
T ss_pred cEEEEEcCcHHHHHHHHHHHHHHhhcCCe
Confidence 122222 23455567777777766544
No 289
>TIGR00035 asp_race aspartate racemase.
Probab=34.87 E-value=76 Score=27.14 Aligned_cols=59 Identities=5% Similarity=0.048 Sum_probs=38.5
Q ss_pred HHHHHHHhHHHHHHcCCEEEEEeCCCHHH-HHHHHHHcCCceeEEecCChHHHHHcCCcc
Q 027245 115 RADYLAAKKDVMDASGVALVLIGPGSVEQ-ARTFSEQTKFKGEVYADPNHSSYEALSFVS 173 (226)
Q Consensus 115 el~~L~~~~~~l~~~Gv~lVaIs~~~~~~-i~~f~~~~~~pfpll~Dp~~~ly~alGv~~ 173 (226)
-.+.+.+..+.|++.|++.|+|.|.+... .++..+..++|+-=..|+.-+..+..|.++
T Consensus 60 ~~~~l~~~~~~L~~~g~d~iviaCNTah~~~~~l~~~~~iPii~i~~~~~~~~~~~~~~~ 119 (229)
T TIGR00035 60 PRPILIDIAVKLENAGADFIIMPCNTAHKFAEDIQKAIGIPLISMIEETAEAVKEDGVKK 119 (229)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECCccHHHHHHHHHHhCCCCEechHHHHHHHHHHcCCCE
Confidence 35667777788889999999999998754 555556555544333455444444445443
No 290
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=34.47 E-value=1.3e+02 Score=23.82 Aligned_cols=44 Identities=16% Similarity=0.198 Sum_probs=30.5
Q ss_pred HHHHhHHHHHHcCCEEEEEeCCCH---H------------HHHHHHHHcCCcee-EEecC
Q 027245 118 YLAAKKDVMDASGVALVLIGPGSV---E------------QARTFSEQTKFKGE-VYADP 161 (226)
Q Consensus 118 ~L~~~~~~l~~~Gv~lVaIs~~~~---~------------~i~~f~~~~~~pfp-ll~Dp 161 (226)
...+...++.+.|..++.++.=+. . .+.+|.+++++||. |+.-.
T Consensus 28 ~~ie~L~~l~~~G~~IiiaTGR~~~~~~~n~~~i~~~~~~~t~~wL~k~~ipYd~l~~~k 87 (126)
T TIGR01689 28 AVIEKLRHYKALGFEIVISSSRNMRTYEGNVGKINIHTLPIIILWLNQHNVPYDEIYVGK 87 (126)
T ss_pred HHHHHHHHHHHCCCEEEEECCCCchhhhccccccchhhHHHHHHHHHHcCCCCceEEeCC
Confidence 334445556678999888875432 2 66899999999996 66543
No 291
>PRK06683 hypothetical protein; Provisional
Probab=34.24 E-value=1.7e+02 Score=21.34 Aligned_cols=52 Identities=10% Similarity=-0.023 Sum_probs=37.9
Q ss_pred HHHHHHcCCEEEEEeCCCH----HHHHHHHHHcCCceeEEecCChHHHHHcCCcccc
Q 027245 123 KDVMDASGVALVLIGPGSV----EQARTFSEQTKFKGEVYADPNHSSYEALSFVSGV 175 (226)
Q Consensus 123 ~~~l~~~Gv~lVaIs~~~~----~~i~~f~~~~~~pfpll~Dp~~~ly~alGv~~~~ 175 (226)
.+.++...+.+|.|..|-. +.+..+++++++|+-.+ +...++-++.|...+.
T Consensus 20 ~kaik~gkaklViiA~Da~~~~~~~i~~~~~~~~Vpv~~~-~t~~eLG~A~G~~~~~ 75 (82)
T PRK06683 20 LEAIKNGIVKEVVIAEDADMRLTHVIIRTALQHNIPITKV-ESVRKLGKVAGIQVGA 75 (82)
T ss_pred HHHHHcCCeeEEEEECCCCHHHHHHHHHHHHhcCCCEEEE-CCHHHHHHHhCCcccE
Confidence 3455566788898988865 34566789989988444 4778899999987653
No 292
>PF04800 ETC_C1_NDUFA4: ETC complex I subunit conserved region; InterPro: IPR006885 This entry represents prokaryotic NADH-ubiquinone oxidoreductase subunits (1.6.5.3 from EC, 1.6.99.3 from EC) from complex I of the electron transport chain initially identified in Neurospora crassa as a 21 kDa protein [].; GO: 0016651 oxidoreductase activity, acting on NADH or NADPH, 0022900 electron transport chain, 0005743 mitochondrial inner membrane; PDB: 2JYA_A 2LJU_A.
Probab=33.92 E-value=49 Score=25.43 Aligned_cols=30 Identities=23% Similarity=0.224 Sum_probs=22.3
Q ss_pred EEEeCCCHHHHHHHHHHcCCceeEEecCCh
Q 027245 134 VLIGPGSVEQARTFSEQTKFKGEVYADPNH 163 (226)
Q Consensus 134 VaIs~~~~~~i~~f~~~~~~pfpll~Dp~~ 163 (226)
|.+.-++.|.+-+||++.|++|.|.....+
T Consensus 51 v~l~F~skE~Ai~yaer~G~~Y~V~~p~~r 80 (101)
T PF04800_consen 51 VRLKFDSKEDAIAYAERNGWDYEVEEPKKR 80 (101)
T ss_dssp CEEEESSHHHHHHHHHHCT-EEEEE-STT-
T ss_pred eEeeeCCHHHHHHHHHHcCCeEEEeCCCCC
Confidence 455678889999999999999998865544
No 293
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=33.82 E-value=1.6e+02 Score=23.86 Aligned_cols=46 Identities=11% Similarity=0.065 Sum_probs=25.6
Q ss_pred CChhHHHHHHHHHHhHHHHHHcCCEEEEEeCCCH-HHHHHHHHHcC-----Ccee-EEec
Q 027245 108 GCVLCRKRADYLAAKKDVMDASGVALVLIGPGSV-EQARTFSEQTK-----FKGE-VYAD 160 (226)
Q Consensus 108 ~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs~~~~-~~i~~f~~~~~-----~pfp-ll~D 160 (226)
+||.|++- +.-|++.+|.+.-+..+.. +..++..+..+ .+.| |+.|
T Consensus 15 t~~~C~~a-------k~iL~~~~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqVFI~ 67 (147)
T cd03031 15 TFEDCNNV-------RAILESFRVKFDERDVSMDSGFREELRELLGAELKAVSLPRVFVD 67 (147)
T ss_pred cChhHHHH-------HHHHHHCCCcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEEEEC
Confidence 89999753 3334556777766766543 33333434333 3455 5554
No 294
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=33.63 E-value=1.1e+02 Score=22.56 Aligned_cols=34 Identities=24% Similarity=0.341 Sum_probs=27.4
Q ss_pred cCCEEEEEeCCCHHHHHHHHHHcCCceeEEecCChH
Q 027245 129 SGVALVLIGPGSVEQARTFSEQTKFKGEVYADPNHS 164 (226)
Q Consensus 129 ~Gv~lVaIs~~~~~~i~~f~~~~~~pfpll~Dp~~~ 164 (226)
.++++++|.-.+++..++++++++++ .|.|.+.-
T Consensus 24 ~~~~v~~v~d~~~~~~~~~~~~~~~~--~~~~~~~l 57 (120)
T PF01408_consen 24 PDFEVVAVCDPDPERAEAFAEKYGIP--VYTDLEEL 57 (120)
T ss_dssp TTEEEEEEECSSHHHHHHHHHHTTSE--EESSHHHH
T ss_pred CCcEEEEEEeCCHHHHHHHHHHhccc--chhHHHHH
Confidence 46699999998999999999998877 77775433
No 295
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=33.57 E-value=1.5e+02 Score=24.55 Aligned_cols=49 Identities=14% Similarity=0.087 Sum_probs=35.7
Q ss_pred HHHHhHHHHHHcCCEEEEEeCCCHHHHHHHHHHcCCceeEEecCChHHH
Q 027245 118 YLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKGEVYADPNHSSY 166 (226)
Q Consensus 118 ~L~~~~~~l~~~Gv~lVaIs~~~~~~i~~f~~~~~~pfpll~Dp~~~ly 166 (226)
...+...++++.|+.++.++--+...+..+.++.+++.++++.....+|
T Consensus 24 ~~~~al~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~~~~~i~~nGa~i~ 72 (230)
T PRK01158 24 KAVEAIRKAEKLGIPVILATGNVLCFARAAAKLIGTSGPVIAENGGVIS 72 (230)
T ss_pred HHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHhCCCCcEEEecCeEEE
Confidence 4445556677899998888877778888888888888777665544444
No 296
>PRK11869 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=33.47 E-value=39 Score=30.47 Aligned_cols=23 Identities=13% Similarity=0.066 Sum_probs=14.2
Q ss_pred ecCCCChhHHH--HHHHHHHhHHHH
Q 027245 104 ARHFGCVLCRK--RADYLAAKKDVM 126 (226)
Q Consensus 104 ~R~~~Cp~C~~--el~~L~~~~~~l 126 (226)
+++.|||.|-- -+..+.+..+++
T Consensus 6 ~~~~~CpGCg~~~i~~~~~~a~~~l 30 (280)
T PRK11869 6 YDIAWCPGCGNFGIRNALMKALSEL 30 (280)
T ss_pred CCCCCCcCCCCHHHHHHHHHHHHHc
Confidence 67899999953 344444444443
No 297
>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=33.30 E-value=79 Score=29.00 Aligned_cols=46 Identities=13% Similarity=0.231 Sum_probs=37.2
Q ss_pred HhHHHHHHcCCEEEEEeCCCHHHHHHHHHHcCCceeEEecCChHHH
Q 027245 121 AKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKGEVYADPNHSSY 166 (226)
Q Consensus 121 ~~~~~l~~~Gv~lVaIs~~~~~~i~~f~~~~~~pfpll~Dp~~~ly 166 (226)
+..++++++|+.||..+.-+..++..++++.++..|+++.....+|
T Consensus 25 ~aL~~Lk~~GI~vVlaTGRt~~ev~~l~~~Lgl~~p~I~eNGA~I~ 70 (302)
T PRK12702 25 QALAALERRSIPLVLYSLRTRAQLEHLCRQLRLEHPFICEDGSAIY 70 (302)
T ss_pred HHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCCeEEEeCCcEEE
Confidence 4466677899999999988999999999999998787776555554
No 298
>PLN02954 phosphoserine phosphatase
Probab=32.87 E-value=95 Score=25.71 Aligned_cols=38 Identities=11% Similarity=0.086 Sum_probs=31.0
Q ss_pred HHHHHhHHHHHHcCCEEEEEeCCCHHHHHHHHHHcCCc
Q 027245 117 DYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFK 154 (226)
Q Consensus 117 ~~L~~~~~~l~~~Gv~lVaIs~~~~~~i~~f~~~~~~p 154 (226)
+.+.+..+.+++.|+.+.+|+.+....++...+.++++
T Consensus 87 pg~~e~l~~l~~~g~~~~IvS~~~~~~i~~~l~~~gi~ 124 (224)
T PLN02954 87 PGIPELVKKLRARGTDVYLVSGGFRQMIAPVAAILGIP 124 (224)
T ss_pred ccHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHhCCC
Confidence 34445566777899999999999988899999998886
No 299
>cd01460 vWA_midasin VWA_Midasin: Midasin is a member of the AAA ATPase family. The proteins of this family are unified by their common archetectural organization that is based upon a conserved ATPase domain. The AAA domain of midasin contains six tandem AAA protomers. The AAA domains in midasin is followed by a D/E rich domain that is following by a VWA domain. The members of this subgroup have a conserved MIDAS motif. The function of this domain is not exactly known although it has been speculated to play a crucial role in midasin function.
Probab=32.40 E-value=56 Score=29.27 Aligned_cols=15 Identities=20% Similarity=0.131 Sum_probs=7.0
Q ss_pred HHHcCCEEEEEeCCC
Q 027245 126 MDASGVALVLIGPGS 140 (226)
Q Consensus 126 l~~~Gv~lVaIs~~~ 140 (226)
+.+.|+.++.|..++
T Consensus 190 a~e~~i~l~~I~ld~ 204 (266)
T cd01460 190 AREQNVFVVFIIIDN 204 (266)
T ss_pred HHHcCCeEEEEEEcC
Confidence 344445544444444
No 300
>cd01450 vWFA_subfamily_ECM Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A
Probab=32.29 E-value=1.1e+02 Score=23.31 Aligned_cols=34 Identities=15% Similarity=0.293 Sum_probs=24.1
Q ss_pred HHHHhHHHHHHcCCEEEEEeCC--CHHHHHHHHHHc
Q 027245 118 YLAAKKDVMDASGVALVLIGPG--SVEQARTFSEQT 151 (226)
Q Consensus 118 ~L~~~~~~l~~~Gv~lVaIs~~--~~~~i~~f~~~~ 151 (226)
+..+..+++++.|+.++.|+.+ +.+.+++++...
T Consensus 120 ~~~~~~~~~~~~~v~v~~i~~g~~~~~~l~~la~~~ 155 (161)
T cd01450 120 DPKEAAAKLKDEGIKVFVVGVGPADEEELREIASCP 155 (161)
T ss_pred chHHHHHHHHHCCCEEEEEeccccCHHHHHHHhCCC
Confidence 4455566677789999999988 456667766554
No 301
>PRK04175 rpl7ae 50S ribosomal protein L7Ae; Validated
Probab=32.00 E-value=2.5e+02 Score=21.96 Aligned_cols=50 Identities=16% Similarity=0.163 Sum_probs=37.8
Q ss_pred HHHHHHcCCEEEEEeCCC-H----HHHHHHHHHcCCceeEEecCChHHHHHcCCcc
Q 027245 123 KDVMDASGVALVLIGPGS-V----EQARTFSEQTKFKGEVYADPNHSSYEALSFVS 173 (226)
Q Consensus 123 ~~~l~~~Gv~lVaIs~~~-~----~~i~~f~~~~~~pfpll~Dp~~~ly~alGv~~ 173 (226)
.+.++...+.+|.|..|- + ..+..+|+++++|+ ++.....++-+++|...
T Consensus 39 ~kaikkgkakLVilA~D~s~~~i~~~~~~lc~~~~Vp~-~~~~tk~eLG~a~Gk~~ 93 (122)
T PRK04175 39 TKAVERGIAKLVVIAEDVDPEEIVAHLPLLCEEKKIPY-VYVPSKKDLGKAAGLEV 93 (122)
T ss_pred HHHHHcCCccEEEEeCCCChHHHHHHHHHHHHHcCCCE-EEECCHHHHHHHhCCCC
Confidence 344555668888888775 2 35667799999997 77777789999999873
No 302
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=31.80 E-value=1e+02 Score=22.90 Aligned_cols=44 Identities=11% Similarity=0.116 Sum_probs=29.0
Q ss_pred eEEEEEecCCCChhHHHHHHHHHHhHHHHHHcCCEEEEEeCCCHHHHHHH
Q 027245 98 KAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTF 147 (226)
Q Consensus 98 ~vVVvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs~~~~~~i~~f 147 (226)
..+++++-..+.. .++.+..+..++.|+.+|+|.......+.++
T Consensus 61 ~~~~i~iS~~g~~------~~~~~~~~~a~~~g~~iv~iT~~~~~~l~~~ 104 (139)
T cd05013 61 GDVVIAISFSGET------KETVEAAEIAKERGAKVIAITDSANSPLAKL 104 (139)
T ss_pred CCEEEEEeCCCCC------HHHHHHHHHHHHcCCeEEEEcCCCCChhHHh
Confidence 3455566555554 3445555667788999999998776555554
No 303
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=31.59 E-value=61 Score=22.13 Aligned_cols=51 Identities=16% Similarity=0.270 Sum_probs=27.4
Q ss_pred EEecCCCChhHHHHHHHHHHhHHHHHHcCCEEEEEeCCCHHHHHHHHHHcC-CceeEEecC
Q 027245 102 AFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTK-FKGEVYADP 161 (226)
Q Consensus 102 vF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs~~~~~~i~~f~~~~~-~pfpll~Dp 161 (226)
..|-...||+|++-...| .++|+..-.+..+... ...+ +..+ -..|++.|.
T Consensus 3 ~Ly~~~~~p~c~kv~~~L-------~~~gi~y~~~~~~~~~-~~~~-~~~~~~~vP~l~~~ 54 (77)
T cd03040 3 TLYQYKTCPFCCKVRAFL-------DYHGIPYEVVEVNPVS-RKEI-KWSSYKKVPILRVE 54 (77)
T ss_pred EEEEcCCCHHHHHHHHHH-------HHCCCceEEEECCchh-HHHH-HHhCCCccCEEEEC
Confidence 355668899999865444 4455554444444322 1122 2233 346777755
No 304
>PF01297 TroA: Periplasmic solute binding protein family; InterPro: IPR006127 This is a family of ABC transporter metal-binding lipoproteins. An example is the periplasmic zinc-binding protein TroA P96116 from SWISSPROT that interacts with an ATP-binding cassette transport system in Treponema pallidum and plays a role in the transport of zinc across the cytoplasmic membrane. Related proteins are found in both Gram-positive and Gram-negative bacteria. ; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2PS9_A 2PS0_A 2OSV_A 2OGW_A 2PS3_A 2PRS_B 3MFQ_C 3GI1_B 2OV3_A 1PQ4_A ....
Probab=31.47 E-value=94 Score=26.72 Aligned_cols=46 Identities=24% Similarity=0.313 Sum_probs=25.1
Q ss_pred HHHHHHhHHHHHHcCCEEEEEeCCCH-HHHHHHHHHcCCceeEEecCC
Q 027245 116 ADYLAAKKDVMDASGVALVLIGPGSV-EQARTFSEQTKFKGEVYADPN 162 (226)
Q Consensus 116 l~~L~~~~~~l~~~Gv~lVaIs~~~~-~~i~~f~~~~~~pfpll~Dp~ 162 (226)
..+|.+..+.+++.++++|....... ..++..+++.+.+. +..|+-
T Consensus 185 ~~~l~~l~~~ik~~~v~~i~~e~~~~~~~~~~la~~~g~~v-v~ld~l 231 (256)
T PF01297_consen 185 PKDLAELIKLIKENKVKCIFTEPQFSSKLAEALAKETGVKV-VYLDPL 231 (256)
T ss_dssp HHHHHHHHHHHHHTT-SEEEEETTS-THHHHHHHHCCT-EE-EESSTT
T ss_pred HHHHHHHHHHhhhcCCcEEEecCCCChHHHHHHHHHcCCcE-EEeCCC
Confidence 44555556666677777666665544 34555566666655 444543
No 305
>PF12740 Chlorophyllase2: Chlorophyllase enzyme; InterPro: IPR010821 This family consists of several chlorophyllase proteins (3.1.1.14 from EC). Chlorophyllase (Chlase) is the first enzyme involved in chlorophyll degradation and catalyses the hydrolysis of the ester bond to yield chlorophyllide and phytol [, , ].; GO: 0047746 chlorophyllase activity, 0015996 chlorophyll catabolic process
Probab=31.39 E-value=1.1e+02 Score=27.29 Aligned_cols=36 Identities=17% Similarity=0.133 Sum_probs=27.9
Q ss_pred CeEEEEEecCCCChhHHHHHHHHHHhHHHHHHcCCEEEEEe
Q 027245 97 RKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIG 137 (226)
Q Consensus 97 ~~vVVvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs 137 (226)
.-.||+|+.++.|.... ...+.+.+...|..||++.
T Consensus 16 ~yPVv~f~~G~~~~~s~-----Ys~ll~hvAShGyIVV~~d 51 (259)
T PF12740_consen 16 TYPVVLFLHGFLLINSW-----YSQLLEHVASHGYIVVAPD 51 (259)
T ss_pred CcCEEEEeCCcCCCHHH-----HHHHHHHHHhCceEEEEec
Confidence 34688899999876655 5666677778999999987
No 306
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=31.26 E-value=1.2e+02 Score=23.98 Aligned_cols=63 Identities=13% Similarity=0.151 Sum_probs=44.0
Q ss_pred EEEecCCCChhHHHHHHHHHHhHHHHHHcCCEEEEEeC--C--CHHHHHHHHHHcCCceeEEecCChHHHHHcCCc
Q 027245 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGP--G--SVEQARTFSEQTKFKGEVYADPNHSSYEALSFV 172 (226)
Q Consensus 101 VvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs~--~--~~~~i~~f~~~~~~pfpll~Dp~~~ly~alGv~ 172 (226)
+.+|....|.-|++-...| ++.|+..-.+.. + +.++++.|.++.+ ..-+.......|+.++..
T Consensus 3 i~iY~~p~Cst~RKA~~~L-------~~~gi~~~~~d~~~~p~t~~eL~~~l~~~g--~~~lin~~~~~~r~l~~~ 69 (126)
T TIGR01616 3 IIFYEKPGCANNARQKAAL-------KASGHDVEVQDILKEPWHADTLRPYFGNKP--VGSWFNRAAPRVKSGEVN 69 (126)
T ss_pred EEEEeCCCCHHHHHHHHHH-------HHCCCCcEEEeccCCCcCHHHHHHHHHHcC--HHHHHhccchHhhhCCCC
Confidence 4577889999999855544 455666665553 2 3589999999864 344556777889888754
No 307
>PF05116 S6PP: Sucrose-6F-phosphate phosphohydrolase; InterPro: IPR006380 This family of sequences represent sucrose phosphate phosphohydrolase (SPP) from plants and cyanobacteria []. SPP is a member of the Class IIB subfamily of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. SPP catalyzes the final step in the biosynthesis of sucrose, a critically important molecule for plants. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.; PDB: 1TJ5_A 2B1Q_A 1TJ4_A 1S2O_A 1U2T_A 2D2V_A 1TJ3_A 1U2S_A 2B1R_A 3GYG_B ....
Probab=31.21 E-value=1.2e+02 Score=26.20 Aligned_cols=58 Identities=9% Similarity=0.023 Sum_probs=41.3
Q ss_pred hhHHHHHHHHHHhHHHHHHcCCEEEEEeCCCHHHHHHHHHHcCCcee--EEecCChHHHH
Q 027245 110 VLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKGE--VYADPNHSSYE 167 (226)
Q Consensus 110 p~C~~el~~L~~~~~~l~~~Gv~lVaIs~~~~~~i~~f~~~~~~pfp--ll~Dp~~~ly~ 167 (226)
..+...+.+|.+..+.....++.++.+.--+.+.+.+..++.+++.| +++|-..++|.
T Consensus 15 ~~~~~~~~~l~~~l~~~~~~~~~~v~~TGRs~~~~~~~~~~~~l~~Pd~~I~svGt~I~~ 74 (247)
T PF05116_consen 15 DGDDEALARLEELLEQQARPEILFVYVTGRSLESVLRLLREYNLPQPDYIITSVGTEIYY 74 (247)
T ss_dssp HCHHHHHHHHHHHHHHHHCCGEEEEEE-SS-HHHHHHHHHHCT-EE-SEEEETTTTEEEE
T ss_pred CCCHHHHHHHHHHHHHhhCCCceEEEECCCCHHHHHHHHHhCCCCCCCEEEecCCeEEEE
Confidence 55666777777766644466777777777788889999999899887 88888888776
No 308
>TIGR00338 serB phosphoserine phosphatase SerB. Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.
Probab=30.46 E-value=86 Score=25.86 Aligned_cols=33 Identities=12% Similarity=0.146 Sum_probs=27.5
Q ss_pred hHHHHHHcCCEEEEEeCCCHHHHHHHHHHcCCc
Q 027245 122 KKDVMDASGVALVLIGPGSVEQARTFSEQTKFK 154 (226)
Q Consensus 122 ~~~~l~~~Gv~lVaIs~~~~~~i~~f~~~~~~p 154 (226)
..+.+++.|..++.|+.+....++.+.+..++.
T Consensus 93 ~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~~i~ 125 (219)
T TIGR00338 93 LVKTLKEKGYKVAVISGGFDLFAEHVKDKLGLD 125 (219)
T ss_pred HHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCC
Confidence 356667789999999999988888899888875
No 309
>KOG4530 consensus Predicted flavoprotein [General function prediction only]
Probab=30.22 E-value=66 Score=27.17 Aligned_cols=31 Identities=13% Similarity=0.235 Sum_probs=27.4
Q ss_pred cCCCeEEEEEecCCCChhHHHHHHHHHHhHH
Q 027245 94 WKDRKAVVAFARHFGCVLCRKRADYLAAKKD 124 (226)
Q Consensus 94 ~~~~~vVVvF~R~~~Cp~C~~el~~L~~~~~ 124 (226)
|.++|++||-+-+++-..|+.+++++.-..+
T Consensus 116 W~gKPalivSyGGhGGg~c~~qL~~v~~fLk 146 (199)
T KOG4530|consen 116 WAGKPALIVSYGGHGGGRCQYQLRQVGVFLK 146 (199)
T ss_pred hcCCceEEEEecCCCCchHHHHHHHHHhhhe
Confidence 7889999999999999999999888776544
No 310
>PRK05778 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Validated
Probab=30.15 E-value=37 Score=30.92 Aligned_cols=26 Identities=19% Similarity=0.194 Sum_probs=15.8
Q ss_pred ecCCCChhHHHHHHHHHHhHHHHHHcC
Q 027245 104 ARHFGCVLCRKRADYLAAKKDVMDASG 130 (226)
Q Consensus 104 ~R~~~Cp~C~~el~~L~~~~~~l~~~G 130 (226)
+++.|||.|-. ..-++.....+.+.|
T Consensus 16 ~~~~~CpGCg~-~~i~~~i~~al~~l~ 41 (301)
T PRK05778 16 LPTTWCPGCGN-FGILNAIIQALAELG 41 (301)
T ss_pred CCCCCCCCCCC-hHHHHHHHHHHHHhc
Confidence 46789999964 334445555555443
No 311
>KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=30.02 E-value=85 Score=29.37 Aligned_cols=43 Identities=16% Similarity=0.233 Sum_probs=32.5
Q ss_pred hHHHHHHHHHHhHHHHHHcCCEEEEEeCCCHHHHHHHHHHcCC
Q 027245 111 LCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKF 153 (226)
Q Consensus 111 ~C~~el~~L~~~~~~l~~~Gv~lVaIs~~~~~~i~~f~~~~~~ 153 (226)
.|..-..++.+....+.+.+.+|++|..-+.+.+++|++++++
T Consensus 13 g~g~ia~~f~~al~~~p~s~~~Ivava~~s~~~A~~fAq~~~~ 55 (351)
T KOG2741|consen 13 GAGRIARDFVRALHTLPESNHQIVAVADPSLERAKEFAQRHNI 55 (351)
T ss_pred ehhHHHHHHHHHhccCcccCcEEEEEecccHHHHHHHHHhcCC
Confidence 3555566666655555567888999988888889999999998
No 312
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=29.88 E-value=99 Score=30.15 Aligned_cols=60 Identities=10% Similarity=0.166 Sum_probs=38.6
Q ss_pred CCeEEEEEecCCCChhHHHHHHHHHHhHHHHHHcCCEEEEEeCCCHHHHHHHHHHcCCc-ee-EEec
Q 027245 96 DRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFK-GE-VYAD 160 (226)
Q Consensus 96 ~~~vVVvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs~~~~~~i~~f~~~~~~p-fp-ll~D 160 (226)
++|+-|-.|-..+||.|.+-...+.+...+.. ++..-.|-..... +.++++++- .| ++.|
T Consensus 475 ~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~--~i~~~~i~~~~~~---~~~~~~~v~~vP~~~i~ 536 (555)
T TIGR03143 475 TKPVNIKIGVSLSCTLCPDVVLAAQRIASLNP--NVEAEMIDVSHFP---DLKDEYGIMSVPAIVVD 536 (555)
T ss_pred CCCeEEEEEECCCCCCcHHHHHHHHHHHHhCC--CceEEEEECcccH---HHHHhCCceecCEEEEC
Confidence 36777777789999999977777766555422 6777777666543 334455543 34 5555
No 313
>PF03129 HGTP_anticodon: Anticodon binding domain; InterPro: IPR004154 tRNA synthetases, or tRNA ligases are involved in protein synthesis. This domain is found in histidyl, glycyl, threonyl and prolyl tRNA synthetases [] it is probably the anticodon binding domain [].; GO: 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding; PDB: 1KOG_B 1EVL_D 1EVK_B 1QF6_A 1FYF_B 2I4O_A 2I4M_A 2I4N_A 2I4L_A 1HC7_D ....
Probab=29.61 E-value=2.1e+02 Score=20.28 Aligned_cols=46 Identities=7% Similarity=0.085 Sum_probs=33.2
Q ss_pred HHHhHHHHHHcCCEEEEEeC-CCHHHHHHHHHHcCCceeEEecCChH
Q 027245 119 LAAKKDVMDASGVALVLIGP-GSVEQARTFSEQTKFKGEVYADPNHS 164 (226)
Q Consensus 119 L~~~~~~l~~~Gv~lVaIs~-~~~~~i~~f~~~~~~pfpll~Dp~~~ 164 (226)
-.+....|.+.|+.+..-.. .+....-++++..++||-|+..++..
T Consensus 18 a~~l~~~L~~~gi~v~~d~~~~~~~k~~~~a~~~g~p~~iiiG~~e~ 64 (94)
T PF03129_consen 18 AQELANKLRKAGIRVELDDSDKSLGKQIKYADKLGIPFIIIIGEKEL 64 (94)
T ss_dssp HHHHHHHHHHTTSEEEEESSSSTHHHHHHHHHHTTESEEEEEEHHHH
T ss_pred HHHHHHHHHHCCCEEEEECCCCchhHHHHHHhhcCCeEEEEECchhH
Confidence 34467888999987776643 44566667788889999988876543
No 314
>PF14968 CCDC84: Coiled coil protein 84
Probab=29.56 E-value=11 Score=34.88 Aligned_cols=15 Identities=27% Similarity=0.552 Sum_probs=12.7
Q ss_pred cCCCChhHHHHHHHH
Q 027245 105 RHFGCVLCRKRADYL 119 (226)
Q Consensus 105 R~~~Cp~C~~el~~L 119 (226)
..+||++|..++.+.
T Consensus 57 ~~fWC~fC~~ev~~~ 71 (336)
T PF14968_consen 57 NRFWCVFCDCEVREH 71 (336)
T ss_pred ceeEeeCccchhhhc
Confidence 468999999988876
No 315
>PF01248 Ribosomal_L7Ae: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family; InterPro: IPR004038 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, ribosomal protein L30 from eukaryotes and archaebacteria, Gadd45 and MyD118 [].; PDB: 2CZW_A 3V7E_B 2QEX_F 1YJ9_F 1VQ8_F 1YJN_F 3I56_F 1VQ6_F 2OTJ_F 1YIJ_F ....
Probab=29.52 E-value=1.1e+02 Score=22.13 Aligned_cols=52 Identities=10% Similarity=0.100 Sum_probs=37.1
Q ss_pred hHHHHHHcCCEEEEEeCCCH----HH-HHHHHHHcCCceeEEecCChHHHHHcCCccc
Q 027245 122 KKDVMDASGVALVLIGPGSV----EQ-ARTFSEQTKFKGEVYADPNHSSYEALSFVSG 174 (226)
Q Consensus 122 ~~~~l~~~Gv~lVaIs~~~~----~~-i~~f~~~~~~pfpll~Dp~~~ly~alGv~~~ 174 (226)
..+.++...+.+|.+..|-. .. +..+|+++++|+ +......++-+++|..+.
T Consensus 23 v~k~l~~~~~~lvilA~d~~~~~~~~~l~~~c~~~~Ip~-~~~~s~~eLG~~~g~~~~ 79 (95)
T PF01248_consen 23 VLKALKKGKAKLVILAEDCSPDSIKKHLPALCEEKNIPY-VFVPSKEELGRACGKKRP 79 (95)
T ss_dssp HHHHHHTTCESEEEEETTSSSGHHHHHHHHHHHHTTEEE-EEESHHHHHHHHTTSSST
T ss_pred HHHHHHcCCCcEEEEcCCCChhhhcccchhheeccceeE-EEECCHHHHHHHHCCCCc
Confidence 34555566677888877642 23 678999988887 455555899999999853
No 316
>PF15632 ATPgrasp_Ter: ATP-grasp in the biosynthetic pathway with Ter operon
Probab=29.42 E-value=98 Score=28.57 Aligned_cols=56 Identities=25% Similarity=0.306 Sum_probs=36.7
Q ss_pred HHHHHHhHHHHHHcCCEEEEEeC-------CCHHHHHHHHHHcCCcee--EEecCChHH---HHHcCC
Q 027245 116 ADYLAAKKDVMDASGVALVLIGP-------GSVEQARTFSEQTKFKGE--VYADPNHSS---YEALSF 171 (226)
Q Consensus 116 l~~L~~~~~~l~~~Gv~lVaIs~-------~~~~~i~~f~~~~~~pfp--ll~Dp~~~l---y~alGv 171 (226)
...|.++.++|++.|++|++.+. ++....-+++++.+++.| ...+.-.++ |.+++.
T Consensus 76 ~~~l~~~r~~F~a~Gv~l~~~~~~~~l~~~~dK~~~y~~~~~~~ipvp~~~~v~t~~el~~a~~~l~~ 143 (329)
T PF15632_consen 76 RELLAAHRDEFEALGVKLLTASSAETLELADDKAAFYEFMEANGIPVPPYWRVRTADELKAAYEELRF 143 (329)
T ss_pred HHHHHHHHHHHHHhCCEEEecCCHHHHHHHhhHHHHHHHHHhCCCCCCCEEEeCCHHHHHHHHHhcCC
Confidence 44499999999999999998331 123455677888888765 444444443 454443
No 317
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily. catalyze the same reaction as SPP.
Probab=29.36 E-value=1.7e+02 Score=24.03 Aligned_cols=43 Identities=21% Similarity=0.263 Sum_probs=31.7
Q ss_pred HhHHHHHHcCCEEEEEeCCCHHHHHHHHHHcCCceeEEecCCh
Q 027245 121 AKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKGEVYADPNH 163 (226)
Q Consensus 121 ~~~~~l~~~Gv~lVaIs~~~~~~i~~f~~~~~~pfpll~Dp~~ 163 (226)
+...++++.|+.++..+--+...+.++.++.+++.++++....
T Consensus 22 ~al~~l~~~Gi~~~~aTGR~~~~~~~~~~~l~~~~~~i~~nGa 64 (225)
T TIGR01482 22 EAIRKAESVGIPVVLVTGNSVQFARALAKLIGTPDPVIAENGG 64 (225)
T ss_pred HHHHHHHHCCCEEEEEcCCchHHHHHHHHHhCCCCeEEEecCc
Confidence 3345567799998888877788888899998877666554433
No 318
>TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase. This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2.
Probab=29.27 E-value=2.6e+02 Score=25.24 Aligned_cols=40 Identities=13% Similarity=0.157 Sum_probs=31.1
Q ss_pred HHhHHHHHHcCCEEEEEeC--CCHHHHHHHHHHcCCceeEEe
Q 027245 120 AAKKDVMDASGVALVLIGP--GSVEQARTFSEQTKFKGEVYA 159 (226)
Q Consensus 120 ~~~~~~l~~~Gv~lVaIs~--~~~~~i~~f~~~~~~pfpll~ 159 (226)
-+....+.++|+..|.|-. .+.+++++++++...|.|++.
T Consensus 169 I~Ra~aY~eAGAD~ifv~~~~~~~~ei~~~~~~~~~p~pv~~ 210 (290)
T TIGR02321 169 VRRGQAYEEAGADAILIHSRQKTPDEILAFVKSWPGKVPLVL 210 (290)
T ss_pred HHHHHHHHHcCCCEEEecCCCCCHHHHHHHHHhcCCCCCeEE
Confidence 3345667789999999973 678999999999877667644
No 319
>PF07905 PucR: Purine catabolism regulatory protein-like family; InterPro: IPR012914 This domain is found in the purine catabolism regulatory protein expressed by Bacillus subtilis (PucR, O32138 from SWISSPROT). PucR is thought to be a transcriptional regulator of genes involved in the purine degradation pathway, and may contain a LysR-like DNA-binding domain. It is similar to LysR-type regulators in that it represses its own expression []. The other members of this family are also putative regulatory proteins.
Probab=29.27 E-value=1.6e+02 Score=22.56 Aligned_cols=38 Identities=16% Similarity=0.072 Sum_probs=30.5
Q ss_pred HHHHhHHHHHHcCCEEEEEeCC-----CHHHHHHHHHHcCCce
Q 027245 118 YLAAKKDVMDASGVALVLIGPG-----SVEQARTFSEQTKFKG 155 (226)
Q Consensus 118 ~L~~~~~~l~~~Gv~lVaIs~~-----~~~~i~~f~~~~~~pf 155 (226)
.+.+..+++.+.|+.=++|..+ =++++.++++++++|.
T Consensus 60 ~~~~~i~~L~~~~~agL~i~~~~~~~~iP~~~i~~A~~~~lPl 102 (123)
T PF07905_consen 60 ELREFIRELAEKGAAGLGIKTGRYLDEIPEEIIELADELGLPL 102 (123)
T ss_pred HHHHHHHHHHHCCCeEEEEeccCccccCCHHHHHHHHHcCCCE
Confidence 5667788888899998888877 2578999999988664
No 320
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=29.18 E-value=3.1e+02 Score=22.24 Aligned_cols=54 Identities=13% Similarity=0.079 Sum_probs=37.7
Q ss_pred CeEEEEEecCCCChhHHHHHHHHHHhHHHHHHcCCEEEEEeCCCHHHHHHHHHHcCCc
Q 027245 97 RKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFK 154 (226)
Q Consensus 97 ~~vVVvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs~~~~~~i~~f~~~~~~p 154 (226)
.++||+-|-+.|.|.|-+.=..|.+..+.+.+ =+.|..|-.++ +..|.+-+++.
T Consensus 23 ~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsn-fa~Iylvdide---V~~~~~~~~l~ 76 (142)
T KOG3414|consen 23 ERLVVIRFGRDWDPTCMKMDELLSSIAEDVSN-FAVIYLVDIDE---VPDFVKMYELY 76 (142)
T ss_pred ceEEEEEecCCCCchHhhHHHHHHHHHHHHhh-ceEEEEEecch---hhhhhhhhccc
Confidence 47999999999999999877777777776643 35566666664 44454444443
No 321
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=28.65 E-value=2.5e+02 Score=26.35 Aligned_cols=65 Identities=15% Similarity=0.171 Sum_probs=41.4
Q ss_pred CCeEEEEEecCCCChhHHHHHHHHHHhHHHHHHcCCEEEEEeCCCHHHHHHHHHHc-CCceeEEecCChH
Q 027245 96 DRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQT-KFKGEVYADPNHS 164 (226)
Q Consensus 96 ~~~vVVvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs~~~~~~i~~f~~~~-~~pfpll~Dp~~~ 164 (226)
+.|++|--...+-.-.-..-+.+ ..+|++.|.++|=|.+.+.+.+++|.+-. ..+.|++.|-.-.
T Consensus 19 daPI~VQSMTnT~T~Dv~aTv~Q----I~~L~~aG~dIVRvtv~~~e~A~A~~~Ik~~~~vPLVaDiHf~ 84 (361)
T COG0821 19 DAPIVVQSMTNTDTADVEATVAQ----IKALERAGCDIVRVTVPDMEAAEALKEIKQRLNVPLVADIHFD 84 (361)
T ss_pred CCceEEEeccCCCcccHHHHHHH----HHHHHHcCCCEEEEecCCHHHHHHHHHHHHhCCCCEEEEeecc
Confidence 34666666655555433333333 34566799999999999987666554321 3578888886544
No 322
>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=28.65 E-value=18 Score=33.57 Aligned_cols=34 Identities=24% Similarity=0.393 Sum_probs=27.7
Q ss_pred eCCCHHHHHHHHHHcCCceeEEecCC-hHHHHHcCC
Q 027245 137 GPGSVEQARTFSEQTKFKGEVYADPN-HSSYEALSF 171 (226)
Q Consensus 137 s~~~~~~i~~f~~~~~~pfpll~Dp~-~~ly~alGv 171 (226)
.++++...++|.+- +..|+||+||+ ++.|..+|-
T Consensus 49 Npddp~A~e~F~~i-n~AYEVLsDpekRk~YD~~GE 83 (336)
T KOG0713|consen 49 NPDDPNANEKFKEI-NAAYEVLSDPEKRKHYDTYGE 83 (336)
T ss_pred CCCCHHHHHHHHHH-HHHHHHhcCHHHHHHHHhhhH
Confidence 36778888888766 78899999987 678999993
No 323
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=28.56 E-value=1.1e+02 Score=24.46 Aligned_cols=35 Identities=11% Similarity=0.171 Sum_probs=27.8
Q ss_pred HHhHHHHHHcCCEEEEEeCCCHHHHHHHHHHcCCc
Q 027245 120 AAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFK 154 (226)
Q Consensus 120 ~~~~~~l~~~Gv~lVaIs~~~~~~i~~f~~~~~~p 154 (226)
.+..+.+++.|+.++.|+.+....++...+.+++.
T Consensus 86 ~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~ 120 (201)
T TIGR01491 86 EELVRWLKEKGLKTAIVSGGIMCLAKKVAEKLNPD 120 (201)
T ss_pred HHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHhCCC
Confidence 33456667889999999999888888888888865
No 324
>TIGR03351 PhnX-like phosphonatase-like hydrolase. This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the
Probab=28.43 E-value=1.1e+02 Score=25.26 Aligned_cols=36 Identities=14% Similarity=0.154 Sum_probs=28.7
Q ss_pred HHHhHHHHHHcCCEEEEEeCCCHHHHHHHHHHcCCc
Q 027245 119 LAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFK 154 (226)
Q Consensus 119 L~~~~~~l~~~Gv~lVaIs~~~~~~i~~f~~~~~~p 154 (226)
..+..+.+++.|+.+.+|+....+.++...+.+++.
T Consensus 92 ~~~~L~~L~~~g~~~~ivT~~~~~~~~~~l~~~~l~ 127 (220)
T TIGR03351 92 AEEAFRSLRSSGIKVALTTGFDRDTAERLLEKLGWT 127 (220)
T ss_pred HHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHhhhh
Confidence 445567778889999999999888888888877765
No 325
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=28.40 E-value=2.9e+02 Score=23.64 Aligned_cols=78 Identities=13% Similarity=0.100 Sum_probs=46.6
Q ss_pred HhHHHHHHcCCEEEEEeCCCHHHHHHHHHHcCCc--ee--EEec------CC----hHHHHHcCCccccceeecchhhHH
Q 027245 121 AKKDVMDASGVALVLIGPGSVEQARTFSEQTKFK--GE--VYAD------PN----HSSYEALSFVSGVLVTFTPKAGLK 186 (226)
Q Consensus 121 ~~~~~l~~~Gv~lVaIs~~~~~~i~~f~~~~~~p--fp--ll~D------p~----~~ly~alGv~~~~~~t~~p~a~~~ 186 (226)
+..+.+++.|+.+.+++....+.++...+.+++. |+ +.+| |+ ..+.+.+|+...-...+ ..+...
T Consensus 115 e~L~~L~~~g~~l~I~Tn~~~~~~~~~l~~~gl~~~Fd~iv~~~~~~~~KP~p~~~~~a~~~~~~~~~~~l~v-gDs~~D 193 (248)
T PLN02770 115 KLKKWIEDRGLKRAAVTNAPRENAELMISLLGLSDFFQAVIIGSECEHAKPHPDPYLKALEVLKVSKDHTFVF-EDSVSG 193 (248)
T ss_pred HHHHHHHHcCCeEEEEeCCCHHHHHHHHHHcCChhhCcEEEecCcCCCCCCChHHHHHHHHHhCCChhHEEEE-cCCHHH
Confidence 3455667889999999999888888888888865 44 3333 33 23355677754333322 333344
Q ss_pred HHHHHHhhhcccc
Q 027245 187 IIQSYMEGYRQDW 199 (226)
Q Consensus 187 ~~~~~~~G~r~~w 199 (226)
+..+...|++-.|
T Consensus 194 i~aA~~aGi~~i~ 206 (248)
T PLN02770 194 IKAGVAAGMPVVG 206 (248)
T ss_pred HHHHHHCCCEEEE
Confidence 4344445555443
No 326
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=28.22 E-value=3.3e+02 Score=23.63 Aligned_cols=58 Identities=16% Similarity=0.200 Sum_probs=40.3
Q ss_pred HHHHHhHHHHHHcCCEEEEEeC-CCHHHHHHHHHHcCCceeEEecC-----ChHHHHHcCCccc
Q 027245 117 DYLAAKKDVMDASGVALVLIGP-GSVEQARTFSEQTKFKGEVYADP-----NHSSYEALSFVSG 174 (226)
Q Consensus 117 ~~L~~~~~~l~~~Gv~lVaIs~-~~~~~i~~f~~~~~~pfpll~Dp-----~~~ly~alGv~~~ 174 (226)
.+--+....+.+.|+..|.|-. .+.+++++++++.+.|.-++.-| +.+-.+.+|+.+-
T Consensus 160 ~eai~Ra~ay~~AGAD~v~v~~~~~~~~~~~~~~~~~~Pl~~~~~~~~~~~~~~~l~~lG~~~v 223 (243)
T cd00377 160 DEAIERAKAYAEAGADGIFVEGLKDPEEIRAFAEAPDVPLNVNMTPGGNLLTVAELAELGVRRV 223 (243)
T ss_pred HHHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHCCCeEE
Confidence 3344445566789999877754 47799999999977776665533 4455777888764
No 327
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=27.80 E-value=3.1e+02 Score=21.74 Aligned_cols=60 Identities=17% Similarity=0.193 Sum_probs=31.8
Q ss_pred eEEEEEecCCCChhHHHHHHHHHHhHHHHHHcCCEEEEEeCC------CHHHHHHHHHHc--CCceeEEecCC
Q 027245 98 KAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPG------SVEQARTFSEQT--KFKGEVYADPN 162 (226)
Q Consensus 98 ~vVVvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs~~------~~~~i~~f~~~~--~~pfpll~Dp~ 162 (226)
|+++..++... .....+.+.....++.|+..|-++.+ +.+.+++..+.. ++++-++.+.+
T Consensus 115 pv~iy~~p~~~-----~~~~~~~~~~~~~~~~g~~~iK~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~gg~~ 182 (201)
T cd00945 115 PLKVILETRGL-----KTADEIAKAARIAAEAGADFIKTSTGFGGGGATVEDVKLMKEAVGGRVGVKAAGGIK 182 (201)
T ss_pred eEEEEEECCCC-----CCHHHHHHHHHHHHHhCCCEEEeCCCCCCCCCCHHHHHHHHHhcccCCcEEEECCCC
Confidence 55555554433 11222333333334567777777776 666666666665 34555555554
No 328
>TIGR02743 TraW type-F conjugative transfer system protein TraW. This protein is an essential component of the F-type conjugative transfer sytem for plasmid DNA transfer and has been shown to be localized to the periplasm.
Probab=27.80 E-value=89 Score=26.89 Aligned_cols=58 Identities=14% Similarity=0.221 Sum_probs=37.3
Q ss_pred HHHHHHHHHhHHHHHHcCCEEEEEeCCCHHHHHHHHHHcCCceeEEecCChHHHHHcCCcccccee
Q 027245 113 RKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKGEVYADPNHSSYEALSFVSGVLVT 178 (226)
Q Consensus 113 ~~el~~L~~~~~~l~~~Gv~lVaIs~~~~~~i~~f~~~~~~pfpll~Dp~~~ly~alGv~~~~~~t 178 (226)
.+++....+.++.. ..+++|.++ |++.++.+ + +.-++|.|.++.+-+.||+...+...
T Consensus 133 ~~Qv~wa~~~~~~~--~~~k~IL~~-Gs~~~l~~---~--l~~~vYfdQ~g~Lt~rF~I~~VPavV 190 (202)
T TIGR02743 133 PEQLAWAQQQLPSC--PNVKWILTG-GSVNELEK---R--LDSRIYFDQHGKLTQKFGIKHVPARV 190 (202)
T ss_pred HHHHHHHHHhcccC--CCeEEEEeC-CCHHHHHH---H--hCCceEEcCCchHhhccCceeeceEE
Confidence 34444444433321 247787777 55543322 2 46789999999999999999876654
No 329
>smart00775 LNS2 LNS2 domain. This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.
Probab=27.68 E-value=2.2e+02 Score=22.90 Aligned_cols=50 Identities=18% Similarity=0.270 Sum_probs=36.3
Q ss_pred HHHHHhHHHHHHcCCEEEEEeCCCHHHH---HHHHHH-----cCCc-eeEEecCChHHH
Q 027245 117 DYLAAKKDVMDASGVALVLIGPGSVEQA---RTFSEQ-----TKFK-GEVYADPNHSSY 166 (226)
Q Consensus 117 ~~L~~~~~~l~~~Gv~lVaIs~~~~~~i---~~f~~~-----~~~p-fpll~Dp~~~ly 166 (226)
+...+.+.++++.|..++.++.-+...+ ++|.++ +++| .|++.-+...++
T Consensus 30 ~~~~~a~~~l~~~G~~ivy~TGRp~~~~~~t~~~l~~~~~~~~~lp~g~li~~~g~~~~ 88 (157)
T smart00775 30 PGVAKLYRDIQNNGYKILYLTARPIGQADRTRSYLSQIKQDGHNLPHGPVLLSPDRLFA 88 (157)
T ss_pred HHHHHHHHHHHHcCCeEEEEcCCcHHHHHHHHHHHHHhhhccccCCCceEEEcCCcchh
Confidence 5556677888889999888887776544 588877 5576 478877766654
No 330
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=27.37 E-value=2.2e+02 Score=23.36 Aligned_cols=56 Identities=13% Similarity=0.181 Sum_probs=36.3
Q ss_pred HHHHHHHHHhHHHHHHcCCEEEEEeCCCHHHHHHHHHHcCC--c-eeEEecCChHHHHH
Q 027245 113 RKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKF--K-GEVYADPNHSSYEA 168 (226)
Q Consensus 113 ~~el~~L~~~~~~l~~~Gv~lVaIs~~~~~~i~~f~~~~~~--p-fpll~Dp~~~ly~a 168 (226)
.+.+..+.+....|.+.|+.+|+-.....++.++++.+.-- . ++||.|-.-+...+
T Consensus 57 ~e~~rr~~~~A~ll~~~G~ivIva~isp~~~~R~~~R~~~~~~~f~eVyv~~~~e~~~~ 115 (156)
T PF01583_consen 57 EENIRRIAEVAKLLADQGIIVIVAFISPYREDREWARELIPNERFIEVYVDCPLEVCRK 115 (156)
T ss_dssp HHHHHHHHHHHHHHHHTTSEEEEE----SHHHHHHHHHHHHTTEEEEEEEES-HHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCeEEEeeccCchHHHHHHHHhCCcCceEEEEeCCCHHHHHH
Confidence 45667777778888899998887777776777776665422 2 57999977666554
No 331
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=27.37 E-value=2.1e+02 Score=20.03 Aligned_cols=49 Identities=8% Similarity=0.019 Sum_probs=32.9
Q ss_pred HHHHHHhHHHHHHcCCEEEEEeC-CCHHHHHHHHHHcCCceeEEecCChH
Q 027245 116 ADYLAAKKDVMDASGVALVLIGP-GSVEQARTFSEQTKFKGEVYADPNHS 164 (226)
Q Consensus 116 l~~L~~~~~~l~~~Gv~lVaIs~-~~~~~i~~f~~~~~~pfpll~Dp~~~ 164 (226)
.....+...+|.+.|+.+..-.. .+....-+++++.+++|-++...+..
T Consensus 17 ~~~a~~la~~Lr~~g~~v~~d~~~~~l~k~i~~a~~~g~~~~iiiG~~e~ 66 (94)
T cd00861 17 QELAEKLYAELQAAGVDVLLDDRNERPGVKFADADLIGIPYRIVVGKKSA 66 (94)
T ss_pred HHHHHHHHHHHHHCCCEEEEECCCCCcccchhHHHhcCCCEEEEECCchh
Confidence 33444556777788998876433 34445556778889999988876543
No 332
>PRK00865 glutamate racemase; Provisional
Probab=27.28 E-value=1.2e+02 Score=26.51 Aligned_cols=67 Identities=10% Similarity=0.055 Sum_probs=46.0
Q ss_pred EEEEEecCCCChhHHHHHHHHHH----hHHHHHHcCCEEEEEeCCCHH--HHHHHHHHcCCceeEEecCChHHHHH
Q 027245 99 AVVAFARHFGCVLCRKRADYLAA----KKDVMDASGVALVLIGPGSVE--QARTFSEQTKFKGEVYADPNHSSYEA 168 (226)
Q Consensus 99 vVVvF~R~~~Cp~C~~el~~L~~----~~~~l~~~Gv~lVaIs~~~~~--~i~~f~~~~~~pfpll~Dp~~~ly~a 168 (226)
-+++|-=...+|+-.+.-.++.+ ..+.|.+.|++.|+|.|.+.. .+++.++.+ +.||+- -+..+..+
T Consensus 32 ~~iY~~D~~~~PYG~ks~~~i~~~~~~~~~~L~~~g~d~iVIaCNTa~~~~l~~lr~~~--~iPvig-i~~a~~~a 104 (261)
T PRK00865 32 HIIYVGDTARFPYGEKSEEEIRERTLEIVEFLLEYGVKMLVIACNTASAVALPDLRERY--DIPVVG-IVPAIKPA 104 (261)
T ss_pred CEEEEecCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEeCchHHHHHHHHHHHhC--CCCEEe-eHHHHHHH
Confidence 35666667788877665555554 356778899999999999865 456776665 567766 55555444
No 333
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=26.95 E-value=98 Score=21.19 Aligned_cols=53 Identities=21% Similarity=0.102 Sum_probs=28.5
Q ss_pred ecCCCChhHHHHHHHHHHhHHHHHHcCCEEEEEeCCCHHHHHHHHHHcC-CceeEEecCCh
Q 027245 104 ARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTK-FKGEVYADPNH 163 (226)
Q Consensus 104 ~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs~~~~~~i~~f~~~~~-~pfpll~Dp~~ 163 (226)
|...+||+|++-.-.|+.. ....+++-|..+.. -..|.+..+ -..|++.|.+.
T Consensus 2 y~~~~Sp~~~kv~~~l~~~-----~i~~~~~~v~~~~~--~~~~~~~~p~~~vPvL~~~g~ 55 (75)
T PF13417_consen 2 YGFPGSPYSQKVRLALEEK-----GIPYELVPVDPEEK--RPEFLKLNPKGKVPVLVDDGE 55 (75)
T ss_dssp EEETTSHHHHHHHHHHHHH-----TEEEEEEEEBTTST--SHHHHHHSTTSBSSEEEETTE
T ss_pred CCcCCChHHHHHHHHHHHc-----CCeEEEeccCcccc--hhHHHhhcccccceEEEECCE
Confidence 4568999999754444321 22344555555543 334444443 34677775543
No 334
>COG0796 MurI Glutamate racemase [Cell envelope biogenesis, outer membrane]
Probab=26.91 E-value=1.3e+02 Score=27.20 Aligned_cols=58 Identities=9% Similarity=0.092 Sum_probs=41.4
Q ss_pred EEEEEecCCCChhHHHHHHHHHH----hHHHHHHcCCEEEEEeCCCHH--HHHHHHHHcCCcee
Q 027245 99 AVVAFARHFGCVLCRKRADYLAA----KKDVMDASGVALVLIGPGSVE--QARTFSEQTKFKGE 156 (226)
Q Consensus 99 vVVvF~R~~~Cp~C~~el~~L~~----~~~~l~~~Gv~lVaIs~~~~~--~i~~f~~~~~~pfp 156 (226)
-+|++.=...||+-.+.-.++.+ ..+.|.+.++++++|.|.+.. .++..++++.+|+-
T Consensus 32 ~~iY~~D~a~~PYG~ks~e~I~~~~~~i~~~l~~~~ik~lVIACNTASa~al~~LR~~~~iPVv 95 (269)
T COG0796 32 DIIYVGDTARFPYGEKSEEEIRERTLEIVDFLLERGIKALVIACNTASAVALEDLREKFDIPVV 95 (269)
T ss_pred cEEEEecCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCCEEEEecchHHHHHHHHHHHhCCCCEE
Confidence 45666666778877666666655 367788899999999999874 55667777655543
No 335
>PF02244 Propep_M14: Carboxypeptidase activation peptide; InterPro: IPR003146 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. The peptidases are synthesised as inactive molecules, zymogens, with propeptides that must be removed by proteolytic cleavage to activate the enzyme. Structural studies of carboxypeptidases A and B reveal the propeptide to exist as a globular domain, followed by an extended alpha-helix; this shields the catalytic site, without specifically binding to it, while the substrate-binding site is blocked by making specific contacts [, ]. Members of this propeptide family are found in the metallocarboxypeptidases: A1, A2 [], A3, A4, A5, A6, U, insect gut carboxypeptidase and B [], and and are associated with peptidases belonging to MEROPS peptidase family M14A. Carboxypeptidases are found in abundance in pancreatic secretions. The pro-segment moiety (activation peptide) accounts for up to a quarter of the total length of the peptidase.; GO: 0004180 carboxypeptidase activity, 0006508 proteolysis; PDB: 3D68_C 3D67_B 3D66_A 1PBA_A 3GLJ_A 1NSA_A 1KWM_A 2BOA_B 1PYT_A 1JQG_A ....
Probab=26.72 E-value=87 Score=21.56 Aligned_cols=34 Identities=15% Similarity=0.204 Sum_probs=26.1
Q ss_pred EEEEEeCCCHHHHHHHHHHcCCceeEEecCChHH
Q 027245 132 ALVLIGPGSVEQARTFSEQTKFKGEVYADPNHSS 165 (226)
Q Consensus 132 ~lVaIs~~~~~~i~~f~~~~~~pfpll~Dp~~~l 165 (226)
.=|.|.+........+.++.+++|.|+.|.=.++
T Consensus 36 ~dv~V~p~~~~~f~~~L~~~~i~~~v~i~dvq~~ 69 (74)
T PF02244_consen 36 VDVMVPPEKLEEFEELLKEHGIEYEVLIEDVQKL 69 (74)
T ss_dssp EEEEEEGGGHHHHHHHHHHTT-EEEEEES-HHHH
T ss_pred EEEEECHHHHHHHHHHHHHCCCcEEEEeHHHHHH
Confidence 4577888888999999999999999988754433
No 336
>PLN02311 chalcone isomerase
Probab=26.69 E-value=1.4e+02 Score=27.00 Aligned_cols=36 Identities=8% Similarity=0.094 Sum_probs=26.3
Q ss_pred CcccccceecCCceeeecccCCCCceeeccCCCCCCC
Q 027245 1 MAISLSTALSPNTTVRFNRLTNPAPTRILPNQSPLWR 37 (226)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 (226)
||.|++.|-. .+.++---+.|+-.+.|+|+++++..
T Consensus 1 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 36 (271)
T PLN02311 1 LRMSCRNTDN-AESIYHFPGKSPNRVSVLQTGNTVSD 36 (271)
T ss_pred CCcccccchh-hhheeecCCCCCCCceEcccCCcccc
Confidence 5667777666 45555556788888899999988765
No 337
>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain. This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.
Probab=26.68 E-value=3.1e+02 Score=21.34 Aligned_cols=42 Identities=12% Similarity=0.005 Sum_probs=31.5
Q ss_pred HHHHHHHHhHHHHHHcCCEEEEEeCCCH---------------HHHHHHHHHcCCce
Q 027245 114 KRADYLAAKKDVMDASGVALVLIGPGSV---------------EQARTFSEQTKFKG 155 (226)
Q Consensus 114 ~el~~L~~~~~~l~~~Gv~lVaIs~~~~---------------~~i~~f~~~~~~pf 155 (226)
+..+...+..+.+++.|+.++.++..+. ..++...+.+++.+
T Consensus 27 ~~~~g~~~~l~~Lk~~g~~~~I~Sn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 83 (147)
T TIGR01656 27 QLRPGAVPALLTLRAAGYTVVVVTNQSGIGRGYFSAEAFRAPNGRVLELLRQLGVAV 83 (147)
T ss_pred EEcCChHHHHHHHHHCCCEEEEEeCCCcccCCcCCHHHHHHHHHHHHHHHHhCCCce
Confidence 3456677788889999999999998762 45566677788774
No 338
>COG0809 QueA S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase) [Translation, ribosomal structure and biogenesis]
Probab=26.67 E-value=2.1e+02 Score=26.77 Aligned_cols=73 Identities=22% Similarity=0.390 Sum_probs=44.5
Q ss_pred CCChhHHHHHHHHHHhHHHHHHcCCEEEEEeCCCHHHHHHHHHHcC---Cce--eEEecCChHHHHHcCCccccceee-c
Q 027245 107 FGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTK---FKG--EVYADPNHSSYEALSFVSGVLVTF-T 180 (226)
Q Consensus 107 ~~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs~~~~~~i~~f~~~~~---~pf--pll~Dp~~~ly~alGv~~~~~~t~-~ 180 (226)
-||-.-++-+..|++ -++.|-+||+||..+...++..+.+.+ +.+ .|+..|..+ |.+...+.+.+ .
T Consensus 230 E~~~v~~eta~~i~~----~k~~GgRIiaVGTTs~R~LEsa~~~~~~~~~sg~T~IFI~PGy~----~~~vD~LiTNFHl 301 (348)
T COG0809 230 EYYEVPQETADAINA----AKARGGRIIAVGTTSVRTLESAAREAGLKAFSGWTDIFIYPGYR----FKVVDALITNFHL 301 (348)
T ss_pred hheecCHHHHHHHHH----HHHcCCeEEEEcchhHHHHHHHhcccCcCcCcCcccEEEcCCCc----ceeeeeeeecCcC
Confidence 345455544444443 356899999999999888888777765 222 477777654 33444444444 4
Q ss_pred chhhHHH
Q 027245 181 PKAGLKI 187 (226)
Q Consensus 181 p~a~~~~ 187 (226)
|++..-+
T Consensus 302 PkSTLlM 308 (348)
T COG0809 302 PKSTLLM 308 (348)
T ss_pred CccHHHH
Confidence 6554443
No 339
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=26.66 E-value=1.7e+02 Score=24.93 Aligned_cols=47 Identities=6% Similarity=0.111 Sum_probs=34.8
Q ss_pred HHhHHHHHHcCCEEEEEeCCCHHHHHHHHHHcCCceeEEecCChHHH
Q 027245 120 AAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKGEVYADPNHSSY 166 (226)
Q Consensus 120 ~~~~~~l~~~Gv~lVaIs~~~~~~i~~f~~~~~~pfpll~Dp~~~ly 166 (226)
.+...++++.|+.++.++--+...+..+.++.++..++++.....+|
T Consensus 22 ~~~i~~l~~~G~~~~iaTGR~~~~~~~~~~~~~~~~~~I~~NGa~i~ 68 (256)
T TIGR00099 22 KEALAKLREKGIKVVLATGRPYKEVKNILKELGLDTPFITANGAAVI 68 (256)
T ss_pred HHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCCCCEEEcCCcEEE
Confidence 34455667789999999888888899999998887666554444444
No 340
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=26.59 E-value=1.2e+02 Score=22.57 Aligned_cols=18 Identities=28% Similarity=0.683 Sum_probs=15.3
Q ss_pred cCCCChhHHHHHHHHHHh
Q 027245 105 RHFGCVLCRKRADYLAAK 122 (226)
Q Consensus 105 R~~~Cp~C~~el~~L~~~ 122 (226)
.-..||+|..++..+.+.
T Consensus 3 YDg~C~lC~~~~~~l~~~ 20 (114)
T PF04134_consen 3 YDGDCPLCRREVRFLRRR 20 (114)
T ss_pred ECCCCHhHHHHHHHHHhc
Confidence 356899999999988877
No 341
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=26.40 E-value=1.2e+02 Score=25.56 Aligned_cols=36 Identities=17% Similarity=0.261 Sum_probs=27.6
Q ss_pred HHHHHhHHHHHHcCCEEEEEeCCC----HHHHHHHHHHcC
Q 027245 117 DYLAAKKDVMDASGVALVLIGPGS----VEQARTFSEQTK 152 (226)
Q Consensus 117 ~~L~~~~~~l~~~Gv~lVaIs~~~----~~~i~~f~~~~~ 152 (226)
.++.+..+++++.||.|-+|+.|+ .+.+++|.+..+
T Consensus 123 ~~i~~~~~~lkk~~I~v~vI~~G~~~~~~~~l~~~~~~~~ 162 (187)
T cd01452 123 KDLVKLAKRLKKNNVSVDIINFGEIDDNTEKLTAFIDAVN 162 (187)
T ss_pred HHHHHHHHHHHHcCCeEEEEEeCCCCCCHHHHHHHHHHhc
Confidence 346677788889999988888775 468888988764
No 342
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=26.34 E-value=1.3e+02 Score=25.83 Aligned_cols=52 Identities=13% Similarity=0.134 Sum_probs=43.1
Q ss_pred HHHHHhHHHHHHcCCEEEEEeCCCHHHHHHHHHHcCCceeEEecCChHHHHH
Q 027245 117 DYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKGEVYADPNHSSYEA 168 (226)
Q Consensus 117 ~~L~~~~~~l~~~Gv~lVaIs~~~~~~i~~f~~~~~~pfpll~Dp~~~ly~a 168 (226)
+...+...++++.|+.++.++--+...+..+.++.+++.++++.....+|..
T Consensus 23 ~~~~~al~~~~~~g~~v~iaTGR~~~~~~~~~~~l~~~~~~I~~NGa~i~~~ 74 (264)
T COG0561 23 PETKEALARLREKGVKVVLATGRPLPDVLSILEELGLDGPLITFNGALIYNG 74 (264)
T ss_pred HHHHHHHHHHHHCCCEEEEECCCChHHHHHHHHHcCCCccEEEeCCeEEecC
Confidence 3444555578899999999988888999999999999988888888777776
No 343
>cd01018 ZntC Metal binding protein ZntC. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and bind their specific ligands in the cleft between these domains. In addition, many of these proteins possess a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=26.27 E-value=2.1e+02 Score=24.90 Aligned_cols=46 Identities=24% Similarity=0.283 Sum_probs=25.9
Q ss_pred HHHHHHhHHHHHHcCCEEEEEeCCCH-HHHHHHHHHcCCceeEEecCC
Q 027245 116 ADYLAAKKDVMDASGVALVLIGPGSV-EQARTFSEQTKFKGEVYADPN 162 (226)
Q Consensus 116 l~~L~~~~~~l~~~Gv~lVaIs~~~~-~~i~~f~~~~~~pfpll~Dp~ 162 (226)
..+|++..+.+++.++.+|.+-.... ..++..++++|++. +..||-
T Consensus 203 ~~~l~~l~~~ik~~~v~~if~e~~~~~~~~~~la~~~g~~v-~~ld~~ 249 (266)
T cd01018 203 PADLKRLIDLAKEKGVRVVFVQPQFSTKSAEAIAREIGAKV-VTIDPL 249 (266)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHcCCeE-EEeCCc
Confidence 34555556666677777666655433 45556666666643 333543
No 344
>cd01026 TOPRIM_OLD TOPRIM_OLD: topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain of the type found in bacterial and archaeal nucleases of the OLD (overcome lysogenization defect) family. The bacteriophage P2 OLD protein, which has DNase as well as RNase activity, consists of an N-terminal ABC-type ATPase domain and a C-terminal Toprim domain; the nuclease activity of OLD is stimulated by ATP, though the ATPase activity is not DNA-dependent. Functional details on OLD are scant and further experimentation is required to define the relationship between the ATPase and Toprim nuclease domains. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). The conserved glutamate may act as a general acid in strand cleavage by nucleases. The DXD motif may co-ordinate Mg2+, a cofactor required for full catalytic function.
Probab=26.24 E-value=2.6e+02 Score=20.33 Aligned_cols=41 Identities=12% Similarity=0.225 Sum_probs=32.6
Q ss_pred HHHHcCCEEEEEeCCCHHHHHHHHHHcCCceeEEecCChHH
Q 027245 125 VMDASGVALVLIGPGSVEQARTFSEQTKFKGEVYADPNHSS 165 (226)
Q Consensus 125 ~l~~~Gv~lVaIs~~~~~~i~~f~~~~~~pfpll~Dp~~~l 165 (226)
.+...++.||-++-.+......+....+++.-++.|.|..-
T Consensus 28 ~~~~~~i~ii~~gG~~~~~~~~ll~~~~i~~~vi~D~D~~~ 68 (97)
T cd01026 28 DLDEAGISIIPVGGKNFKPFIKLLNALGIPVAVLTDLDAKR 68 (97)
T ss_pred CHHHCCEEEEEeCCcchHHHHHHHHHcCCCEEEEEeCCCCC
Confidence 35678999999987765666677788899999999988753
No 345
>COG5561 Predicted metal-binding protein [Function unknown]
Probab=26.15 E-value=45 Score=25.37 Aligned_cols=45 Identities=11% Similarity=0.151 Sum_probs=31.6
Q ss_pred CCChhHHHHHHHHHHhHHHHHHcCCEEEEEe-CCC------HHHHHHHHHHcC
Q 027245 107 FGCVLCRKRADYLAAKKDVMDASGVALVLIG-PGS------VEQARTFSEQTK 152 (226)
Q Consensus 107 ~~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs-~~~------~~~i~~f~~~~~ 152 (226)
.+||.|..=+.+.++....|++- |+||++- ++. +..+++.....+
T Consensus 5 ~gCPG~v~CfKA~ne~~g~Fe~y-v~viaf~tCGgCpGrlvpn~~k~lk~~eg 56 (101)
T COG5561 5 YGCPGEVRCFKAANEGEGKFEEY-VRVIAFITCGGCPGRLVPNQIKQLKGKEG 56 (101)
T ss_pred cCCCchHHHHHHHhccccccccc-EEEEEEEEcCCCCcchhHHHHHHHhhccc
Confidence 57999999999999988888766 8888764 321 345555544443
No 346
>KOG1157 consensus Predicted guanosine polyphosphate pyrophosphohydrolase/synthase [Signal transduction mechanisms]
Probab=26.11 E-value=78 Score=30.58 Aligned_cols=61 Identities=11% Similarity=0.195 Sum_probs=39.3
Q ss_pred HHHhHHHHHHcCCEEEEEeCCCH---HHHHHHHHHcC--------CceeEEecCChHHHHHcCCccccceee
Q 027245 119 LAAKKDVMDASGVALVLIGPGSV---EQARTFSEQTK--------FKGEVYADPNHSSYEALSFVSGVLVTF 179 (226)
Q Consensus 119 L~~~~~~l~~~Gv~lVaIs~~~~---~~i~~f~~~~~--------~pfpll~Dp~~~ly~alGv~~~~~~t~ 179 (226)
+.++.+.++.+|+.-++|.---. +..++..++.- ....++.|++...|+++|+.+.++..+
T Consensus 269 ~~~l~~~l~~a~i~~~~i~gr~ks~ysi~~kmlk~~~~~dei~di~glr~i~~~~~~cyk~~~vv~slw~ev 340 (543)
T KOG1157|consen 269 IEKLEQALKKAGISYHVIKGRHKSLYSIYKKMLKKKLTPDEIHDIHGLRLIVDNESDCYKALGVVHSLWSEV 340 (543)
T ss_pred HHHHHHHHHhccceeEEEecchhhHHHHHHHHHhcCCCHHHhhhhcceEEEEcCchHHHHHHHHHHHHHHhC
Confidence 44566778888877655543322 22233332211 235799999999999999999877654
No 347
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=26.00 E-value=2.1e+02 Score=24.39 Aligned_cols=46 Identities=7% Similarity=0.167 Sum_probs=34.2
Q ss_pred HHhHHHHHHcCCEEEEEeCCCHHHHHHHHHHcCCceeEEecCChHH
Q 027245 120 AAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKGEVYADPNHSS 165 (226)
Q Consensus 120 ~~~~~~l~~~Gv~lVaIs~~~~~~i~~f~~~~~~pfpll~Dp~~~l 165 (226)
.+..+++++.|+.++.++.-+...+..+.++.++..++++-....+
T Consensus 21 ~~ai~~l~~~G~~~vi~TgR~~~~~~~~~~~lg~~~~~I~~NGa~I 66 (225)
T TIGR02461 21 REALEELKDLGFPIVFVSSKTRAEQEYYREELGVEPPFIVENGGAI 66 (225)
T ss_pred HHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCCCCcEEEcCCcEE
Confidence 4455667789999999988888889999999997655555444333
No 348
>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []. This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....
Probab=25.96 E-value=2.1e+02 Score=23.26 Aligned_cols=48 Identities=8% Similarity=0.057 Sum_probs=35.0
Q ss_pred HHHHhHHHHHHcCCEEEEEeCCCHHHHHHHHHHcCCceeEEecCChHH
Q 027245 118 YLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKGEVYADPNHSS 165 (226)
Q Consensus 118 ~L~~~~~~l~~~Gv~lVaIs~~~~~~i~~f~~~~~~pfpll~Dp~~~l 165 (226)
+..+...++.++|+.++..+--+...+..+.++.++..++++....-+
T Consensus 19 ~~~~al~~l~~~g~~~~i~TGR~~~~~~~~~~~~~~~~~~I~~nGa~i 66 (254)
T PF08282_consen 19 ETIEALKELQEKGIKLVIATGRSYSSIKRLLKELGIDDYFICSNGALI 66 (254)
T ss_dssp HHHHHHHHHHHTTCEEEEECSSTHHHHHHHHHHTTHCSEEEEGGGTEE
T ss_pred HHHHHHHhhcccceEEEEEccCcccccccccccccchhhhccccccee
Confidence 334445567779999888888888899999999998866666444333
No 349
>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional
Probab=25.87 E-value=1.9e+02 Score=29.66 Aligned_cols=74 Identities=7% Similarity=0.136 Sum_probs=49.0
Q ss_pred cCcCCCcEEecCCCCeEeCCCccCCCeEEEEEecCCCChhHHHHHHHHHHhHHHHHHcCCEEEEEeCCCHHHHHHHHHHc
Q 027245 72 KNLLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQT 151 (226)
Q Consensus 72 g~~apdf~L~D~~G~~v~Lsdl~~~~~vVVvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs~~~~~~i~~f~~~~ 151 (226)
+.....+-+.|.||.-+.-.... .+.-.+...+++++|+.++..+--+...+..++++.
T Consensus 412 ~~~~~KLIfsDLDGTLLd~d~~i---------------------~~~t~eAL~~L~ekGI~~VIATGRs~~~i~~l~~~L 470 (694)
T PRK14502 412 SGQFKKIVYTDLDGTLLNPLTYS---------------------YSTALDALRLLKDKELPLVFCSAKTMGEQDLYRNEL 470 (694)
T ss_pred cCceeeEEEEECcCCCcCCCCcc---------------------CHHHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHc
Confidence 45555678889888776543210 012234456677889998888888888899999998
Q ss_pred CCceeEEecCChHHH
Q 027245 152 KFKGEVYADPNHSSY 166 (226)
Q Consensus 152 ~~pfpll~Dp~~~ly 166 (226)
++..++++.....+|
T Consensus 471 gl~~~~I~eNGA~I~ 485 (694)
T PRK14502 471 GIKDPFITENGGAIF 485 (694)
T ss_pred CCCCeEEEcCCCEEE
Confidence 876566655444443
No 350
>PF12017 Tnp_P_element: Transposase protein; InterPro: IPR021896 Protein in this family are transposases found in insects. This region is about 230 amino acids in length and is found associated with PF05485 from PFAM.
Probab=25.86 E-value=1.3e+02 Score=26.56 Aligned_cols=38 Identities=16% Similarity=0.114 Sum_probs=27.2
Q ss_pred HHHHHHhHHHHHHcCCEEEEEeCCCHHHHHHHHHHcCC
Q 027245 116 ADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKF 153 (226)
Q Consensus 116 l~~L~~~~~~l~~~Gv~lVaIs~~~~~~i~~f~~~~~~ 153 (226)
+..|.+...++.+.|+.||||.+|-...-.....++|+
T Consensus 195 ~~~l~~iI~~l~~~g~~VvAivsD~g~~N~~~w~~Lgi 232 (236)
T PF12017_consen 195 ADILKNIIEKLHEIGYNVVAIVSDMGSNNISLWRELGI 232 (236)
T ss_pred HHHHHHHHHHHHHCCCEEEEEECCCCcchHHHHHHcCC
Confidence 56667777889999999999999975433333444454
No 351
>TIGR02766 crypt_chrom_pln cryptochrome, plant family. At least five major families of cryptochomes and photolyases share FAD cofactor binding, sequence homology, and the ability to react to short wavelengths of visible light. Photolysases are responsible for light-dependent DNA repair by removal of two types of uv-induced DNA dimerizations. Cryptochromes have other functions, often regulatory and often largely unknown, which may include circadian clock entrainment and control of development. Members of this subfamily are known so far only in plants; they may show some photolyase activity in vitro but appear mostly to be regulatory proteins that respond to blue light.
Probab=25.81 E-value=1.9e+02 Score=27.54 Aligned_cols=44 Identities=18% Similarity=0.191 Sum_probs=34.0
Q ss_pred HHHHHHhHHHHHHcCCEEEEEeCCC-HHHHHHHHHHcCCceeEEec
Q 027245 116 ADYLAAKKDVMDASGVALVLIGPGS-VEQARTFSEQTKFKGEVYAD 160 (226)
Q Consensus 116 l~~L~~~~~~l~~~Gv~lVaIs~~~-~~~i~~f~~~~~~pfpll~D 160 (226)
...|.++.++|++.|..++++-.++ .+.+.+.++++++. .|+.+
T Consensus 50 ~~sL~~L~~~L~~~G~~L~v~~~g~~~~~l~~l~~~~~i~-~v~~~ 94 (475)
T TIGR02766 50 KQSLAHLDQSLRSLGTCLVTIRSTDTVAALLDCVRSTGAT-RLFFN 94 (475)
T ss_pred HHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHHHcCCC-EEEEe
Confidence 4688888999999999999885554 57788999988865 35444
No 352
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=25.74 E-value=98 Score=20.90 Aligned_cols=57 Identities=12% Similarity=0.048 Sum_probs=31.8
Q ss_pred EEEecCCCChhHHHHHHHHHHhHHHHHHcCCEEEEEeCCCH-HHHHHHHHHcCC-ceeEEecCC
Q 027245 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSV-EQARTFSEQTKF-KGEVYADPN 162 (226)
Q Consensus 101 VvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs~~~~-~~i~~f~~~~~~-pfpll~Dp~ 162 (226)
+.+|....||.|++-.-.|.+.- ...+++.|..... ..-..|.+.+.. ..|++.|.+
T Consensus 2 ~~Ly~~~~s~~s~~v~~~l~~~~-----i~~~~~~~~~~~~~~~~~~~~~~~P~~~vP~l~~~g 60 (76)
T cd03053 2 LKLYGAAMSTCVRRVLLCLEEKG-----VDYELVPVDLTKGEHKSPEHLARNPFGQIPALEDGD 60 (76)
T ss_pred eEEEeCCCChhHHHHHHHHHHcC-----CCcEEEEeCccccccCCHHHHhhCCCCCCCEEEECC
Confidence 45677788999987655555432 2244555554322 122346555554 367777754
No 353
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=25.65 E-value=1.9e+02 Score=23.89 Aligned_cols=42 Identities=19% Similarity=0.201 Sum_probs=31.1
Q ss_pred HHHHhHHHHHHcCCEEEEEeCCCHHHHHHHHHHcCCceeEEe
Q 027245 118 YLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKGEVYA 159 (226)
Q Consensus 118 ~L~~~~~~l~~~Gv~lVaIs~~~~~~i~~f~~~~~~pfpll~ 159 (226)
...+...++++.|+.++..+--+...++.+.++.++..++++
T Consensus 22 ~~~~~i~~l~~~g~~~~~~TGR~~~~~~~~~~~l~~~~~~i~ 63 (215)
T TIGR01487 22 RAIEAIRKAEKKGIPVSLVTGNTVPFARALAVLIGTSGPVVA 63 (215)
T ss_pred HHHHHHHHHHHCCCEEEEEcCCcchhHHHHHHHhCCCCcEEE
Confidence 444556667789999888887777888888888887755444
No 354
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=25.64 E-value=2.2e+02 Score=23.84 Aligned_cols=58 Identities=24% Similarity=0.217 Sum_probs=35.5
Q ss_pred eEEEEEecCCCChhHHHHHHHHHHhHHHHHHcCCEEEEEeCCC-----HHHHHHHHHHcCCceeEEe
Q 027245 98 KAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGS-----VEQARTFSEQTKFKGEVYA 159 (226)
Q Consensus 98 ~vVVvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs~~~-----~~~i~~f~~~~~~pfpll~ 159 (226)
|-|++|+--+++.=-.. +..|+ ..+...|-+|-.|+.|. .++++.|++..++|+-...
T Consensus 1 p~vi~lvGptGvGKTTt-~aKLA---a~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~ 63 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTT-IAKLA---ARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVAR 63 (196)
T ss_dssp SEEEEEEESTTSSHHHH-HHHHH---HHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESS
T ss_pred CEEEEEECCCCCchHhH-HHHHH---HHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhh
Confidence 34666666666665442 23333 33333477788888876 4789999999998765433
No 355
>PRK01122 potassium-transporting ATPase subunit B; Provisional
Probab=25.64 E-value=1.3e+02 Score=30.70 Aligned_cols=10 Identities=10% Similarity=0.255 Sum_probs=6.0
Q ss_pred ccccCCcccc
Q 027245 201 LSFERDTVSR 210 (226)
Q Consensus 201 ~~~~GD~~Q~ 210 (226)
--+.||...-
T Consensus 510 VaMtGDGvND 519 (679)
T PRK01122 510 VAMTGDGTND 519 (679)
T ss_pred EEEECCCcch
Confidence 3467776554
No 356
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=25.61 E-value=2e+02 Score=28.06 Aligned_cols=55 Identities=15% Similarity=0.106 Sum_probs=38.3
Q ss_pred ccCCCeEEEEEecCC-CChhHHHHHHHHHHhHHHHHHcCCEEEEEeCCCH--HHHHHHHH
Q 027245 93 LWKDRKAVVAFARHF-GCVLCRKRADYLAAKKDVMDASGVALVLIGPGSV--EQARTFSE 149 (226)
Q Consensus 93 l~~~~~vVVvF~R~~-~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs~~~~--~~i~~f~~ 149 (226)
++++++++|.-=|+. -.|.-|++. .....+.+++.|-.|++|++|++ +.++.+.+
T Consensus 463 llEeR~Ilv~DEWAADQDPaFRR~F--Y~~lLp~LK~qGKTI~aIsHDd~YF~~ADrll~ 520 (546)
T COG4615 463 LLEERDILVLDEWAADQDPAFRREF--YQVLLPLLKEQGKTIFAISHDDHYFIHADRLLE 520 (546)
T ss_pred HHhhCCeEEeehhhccCChHHHHHH--HHHHhHHHHHhCCeEEEEecCchhhhhHHHHHH
Confidence 335688888877764 456555543 34456778999999999999997 45555543
No 357
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=25.51 E-value=2.8e+02 Score=23.39 Aligned_cols=25 Identities=20% Similarity=0.416 Sum_probs=18.5
Q ss_pred CCeEEEEEecCCCChhHHHHHHHHH
Q 027245 96 DRKAVVAFARHFGCVLCRKRADYLA 120 (226)
Q Consensus 96 ~~~vVVvF~R~~~Cp~C~~el~~L~ 120 (226)
.++-+++-|-...|++|.+-=.++-
T Consensus 41 ~~Kylllmfes~~C~yC~~~KKd~~ 65 (182)
T COG2143 41 NDKYLLLMFESNGCSYCERFKKDLK 65 (182)
T ss_pred cCcEEEEEEcCCCChHHHHHHHhhc
Confidence 3567778889999999987544443
No 358
>cd01473 vWA_CTRP CTRP for CS protein-TRAP-related protein: Adhesion of Plasmodium to host cells is an important phenomenon in parasite invasion and in malaria associated pathology.CTRP encodes a protein containing a putative signal sequence followed by a long extracellular region of 1990 amino acids, a transmembrane domain, and a short cytoplasmic segment. The extracellular region of CTRP contains two separated adhesive domains. The first domain contains six 210-amino acid-long homologous VWA domain repeats. The second domain contains seven repeats of 87-60 amino acids in length, which share similarities with the thrombospondin type 1 domain found in a variety of adhesive molecules. Finally, CTRP also contains consensus motifs found in the superfamily of haematopoietin receptors. The VWA domains in these proteins likely mediate protein-protein interactions.
Probab=25.51 E-value=86 Score=26.09 Aligned_cols=24 Identities=21% Similarity=0.372 Sum_probs=18.8
Q ss_pred HHHhHHHHHHcCCEEEEEeCCCHH
Q 027245 119 LAAKKDVMDASGVALVLIGPGSVE 142 (226)
Q Consensus 119 L~~~~~~l~~~Gv~lVaIs~~~~~ 142 (226)
+.+..+++++.||.+++|+.+..+
T Consensus 128 ~~~~a~~lk~~gV~i~~vGiG~~~ 151 (192)
T cd01473 128 LQDISLLYKEENVKLLVVGVGAAS 151 (192)
T ss_pred HHHHHHHHHHCCCEEEEEEecccc
Confidence 445566788999999999998753
No 359
>PRK14010 potassium-transporting ATPase subunit B; Provisional
Probab=25.33 E-value=1.3e+02 Score=30.48 Aligned_cols=31 Identities=13% Similarity=0.127 Sum_probs=17.0
Q ss_pred HHHHHHcCCEEEEEeCCCHHHHHHHHHHcCC
Q 027245 123 KDVMDASGVALVLIGPGSVEQARTFSEQTKF 153 (226)
Q Consensus 123 ~~~l~~~Gv~lVaIs~~~~~~i~~f~~~~~~ 153 (226)
.+++++.|++++.|+-|++..+++.+++.|+
T Consensus 450 I~~Lr~~GI~vvMiTGDn~~TA~aIA~elGI 480 (673)
T PRK14010 450 FRELREMGIETVMCTGDNELTAATIAKEAGV 480 (673)
T ss_pred HHHHHHCCCeEEEECCCCHHHHHHHHHHcCC
Confidence 3444455555555555555555555555555
No 360
>cd00859 HisRS_anticodon HisRS Histidyl-anticodon binding domain. HisRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=25.21 E-value=2.2e+02 Score=19.19 Aligned_cols=46 Identities=7% Similarity=0.081 Sum_probs=32.8
Q ss_pred HHHHHHhHHHHHHcCCEEEEEeCC-CHHHHHHHHHHcCCceeEEecC
Q 027245 116 ADYLAAKKDVMDASGVALVLIGPG-SVEQARTFSEQTKFKGEVYADP 161 (226)
Q Consensus 116 l~~L~~~~~~l~~~Gv~lVaIs~~-~~~~i~~f~~~~~~pfpll~Dp 161 (226)
.....+...+|.+.|+.+.....+ +....-.+++..++++-++.+.
T Consensus 14 ~~~a~~i~~~Lr~~g~~v~~~~~~~~~~~~~~~a~~~~~~~~i~i~~ 60 (91)
T cd00859 14 LSEALELAEQLRDAGIKAEIDYGGRKLKKQFKYADRSGARFAVILGE 60 (91)
T ss_pred HHHHHHHHHHHHHCCCEEEEecCCCCHHHHHHHHHHcCCCEEEEEcH
Confidence 334445667788889887664443 5567777889999999888875
No 361
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=25.04 E-value=1.5e+02 Score=22.05 Aligned_cols=43 Identities=12% Similarity=0.081 Sum_probs=27.1
Q ss_pred HHHHHhHHHHHHcCCEEEEEeCCCHHHHHHHHHHcCCceeEEecCC
Q 027245 117 DYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKGEVYADPN 162 (226)
Q Consensus 117 ~~L~~~~~~l~~~Gv~lVaIs~~~~~~i~~f~~~~~~pfpll~Dp~ 162 (226)
.++.+..+..++.|+.+|+|.......+.+++ .+-+.+-.+++
T Consensus 67 ~~~~~~~~~ak~~g~~vi~iT~~~~~~l~~~a---d~~l~~~~~~~ 109 (131)
T PF01380_consen 67 RELIELLRFAKERGAPVILITSNSESPLARLA---DIVLYIPTGEE 109 (131)
T ss_dssp HHHHHHHHHHHHTTSEEEEEESSTTSHHHHHS---SEEEEEESSCG
T ss_pred hhhhhhhHHHHhcCCeEEEEeCCCCCchhhhC---CEEEEecCCCc
Confidence 44455555667889999999987666666554 34444444443
No 362
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=25.03 E-value=81 Score=25.41 Aligned_cols=33 Identities=15% Similarity=0.202 Sum_probs=24.8
Q ss_pred EEEecCCCChhHHHHHHHHHHhHHHHHHcCCEEE
Q 027245 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALV 134 (226)
Q Consensus 101 VvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~lV 134 (226)
|.||.-+.||.|..-.+.|.+..+++. .++.|.
T Consensus 3 i~~~~D~~cp~c~~~~~~l~~l~~~~~-~~~~v~ 35 (193)
T cd03025 3 LYYFIDPLCGWCYGFEPLLEKLKEEYG-GGIEVE 35 (193)
T ss_pred EEEEECCCCchhhCchHHHHHHHHHhC-CCceEE
Confidence 567888999999988888888887772 344443
No 363
>PF02514 CobN-Mg_chel: CobN/Magnesium Chelatase; InterPro: IPR003672 This family contains a domain common to the cobN protein and to magnesium protoporphyrin chelatase. CobN may play a role in cobalt insertion reactions and is implicated in the conversion of precorrin-2 to cobyrinic acid in cobalamin biosynthesis []. Magnesium protoporphyrin chelatase is involved in chlorophyll biosynthesis as the third subunit of light-independent protochlorophyllide reductase in bacteria and plants [].; GO: 0009058 biosynthetic process
Probab=25.03 E-value=2.2e+02 Score=30.68 Aligned_cols=73 Identities=12% Similarity=0.058 Sum_probs=49.5
Q ss_pred eEEEEEecCCCChhHHHHHHHHHHhHHHHHHcCCEEEEEeCCC----HHHHHHHHHHcC-C---------ceeEEecC--
Q 027245 98 KAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGS----VEQARTFSEQTK-F---------KGEVYADP-- 161 (226)
Q Consensus 98 ~vVVvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs~~~----~~~i~~f~~~~~-~---------pfpll~Dp-- 161 (226)
.+.|+|+|..|...+...+.+| .++|++.|+.+|.|.+.. .+.++.|...-+ . .|.+...+
T Consensus 73 ~VgIlfyrs~~~~g~~~~vdaL---I~~LE~~G~nvipvf~~~~~~~~~~i~~~f~~~g~~~vDaIIn~~~f~l~~~~~~ 149 (1098)
T PF02514_consen 73 TVGILFYRSYWLSGNTAVVDAL---IRALEERGLNVIPVFCSSGPDSQEAIEDYFMDDGKPRVDAIINLTGFSLGGGPAG 149 (1098)
T ss_pred EEEEEeehhhhhcCCcHHHHHH---HHHHHHCCCeEEEEEecCccchHHHHHHHHhhcCCCCceEEEEcCccccCCCCcc
Confidence 4678899999988887776655 455668999999999643 356777766522 1 22333222
Q ss_pred -ChHHHHHcCCcc
Q 027245 162 -NHSSYEALSFVS 173 (226)
Q Consensus 162 -~~~ly~alGv~~ 173 (226)
...+++.+|+.-
T Consensus 150 ~~~~~L~~LnVPV 162 (1098)
T PF02514_consen 150 GAIELLKELNVPV 162 (1098)
T ss_pred hhHHHHHHCCCCE
Confidence 467888999864
No 364
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=25.01 E-value=1.7e+02 Score=24.81 Aligned_cols=47 Identities=6% Similarity=0.055 Sum_probs=34.0
Q ss_pred HHhHHHHHHcCCEEEEEeCCCHHHHHHHHHHcCCceeEEecCChHHH
Q 027245 120 AAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKGEVYADPNHSSY 166 (226)
Q Consensus 120 ~~~~~~l~~~Gv~lVaIs~~~~~~i~~f~~~~~~pfpll~Dp~~~ly 166 (226)
.+...+++++|+.++..+-=....+..+.++.++..++++.....+|
T Consensus 26 ~~ai~~~~~~G~~~~iaTGR~~~~~~~~~~~l~~~~~~I~~NGa~i~ 72 (272)
T PRK10530 26 LEALARAREAGYKVIIVTGRHHVAIHPFYQALALDTPAICCNGTYLY 72 (272)
T ss_pred HHHHHHHHHCCCEEEEEcCCChHHHHHHHHhcCCCCCEEEcCCcEEE
Confidence 34456677899988777766777888899998887666665555554
No 365
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]
Probab=24.97 E-value=2.6e+02 Score=25.52 Aligned_cols=59 Identities=12% Similarity=0.073 Sum_probs=39.3
Q ss_pred HHHHHHhHHHHHHcCCEEE-EEeCCCHHHHHHHHHHcCCcee--EEecCC-----hHHHHHcCCccc
Q 027245 116 ADYLAAKKDVMDASGVALV-LIGPGSVEQARTFSEQTKFKGE--VYADPN-----HSSYEALSFVSG 174 (226)
Q Consensus 116 l~~L~~~~~~l~~~Gv~lV-aIs~~~~~~i~~f~~~~~~pfp--ll~Dp~-----~~ly~alGv~~~ 174 (226)
+.+--+....+.++|+..| .-+..+.+++++|++....|.| +..... ..-++.+|+++-
T Consensus 165 ld~AI~Ra~AY~eAGAD~if~~al~~~e~i~~f~~av~~pl~~N~t~~g~tp~~~~~~L~~~Gv~~V 231 (289)
T COG2513 165 LDDAIERAQAYVEAGADAIFPEALTDLEEIRAFAEAVPVPLPANITEFGKTPLLTVAELAELGVKRV 231 (289)
T ss_pred HHHHHHHHHHHHHcCCcEEccccCCCHHHHHHHHHhcCCCeeeEeeccCCCCCcCHHHHHhcCceEE
Confidence 4444445556778999854 5567889999999999885444 333322 345788888764
No 366
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=24.96 E-value=1.2e+02 Score=24.77 Aligned_cols=37 Identities=22% Similarity=0.205 Sum_probs=29.4
Q ss_pred HHHHhHHHHHHcCCEEEEEeCCCHHHHHHHHHHcCCc
Q 027245 118 YLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFK 154 (226)
Q Consensus 118 ~L~~~~~~l~~~Gv~lVaIs~~~~~~i~~f~~~~~~p 154 (226)
...+..+.+++.|+.+.+++.++...++...++.++.
T Consensus 89 g~~~~L~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~ 125 (213)
T TIGR01449 89 GVEATLGALRAKGLRLGLVTNKPTPLARPLLELLGLA 125 (213)
T ss_pred CHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCcH
Confidence 3344556777889999999999888888998988864
No 367
>COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=24.23 E-value=3.5e+02 Score=22.01 Aligned_cols=84 Identities=11% Similarity=0.109 Sum_probs=48.6
Q ss_pred HHHHHHHhHHHHHHcCCEEEEEeCCCHHHHHHHHHHcCC----ceeEEec------CChHHH----HHcCCccccceeec
Q 027245 115 RADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKF----KGEVYAD------PNHSSY----EALSFVSGVLVTFT 180 (226)
Q Consensus 115 el~~L~~~~~~l~~~Gv~lVaIs~~~~~~i~~f~~~~~~----pfpll~D------p~~~ly----~alGv~~~~~~t~~ 180 (226)
..++..+...+++.. .++.+++-+.........++.|+ ..-+.++ |+.++| +.+|+.......+
T Consensus 100 ~~~~~~~~L~~l~~~-~~l~ilTNg~~~~~~~~l~~~gl~~~Fd~v~~s~~~g~~KP~~~~f~~~~~~~g~~p~~~l~V- 177 (229)
T COG1011 100 DYPEALEALKELGKK-YKLGILTNGARPHQERKLRQLGLLDYFDAVFISEDVGVAKPDPEIFEYALEKLGVPPEEALFV- 177 (229)
T ss_pred cChhHHHHHHHHHhh-ccEEEEeCCChHHHHHHHHHcCChhhhheEEEecccccCCCCcHHHHHHHHHcCCCcceEEEE-
Confidence 334444444555555 77999999887777777777773 3345665 444554 4577763323223
Q ss_pred chhhHH-HHHHHHhhhccccc
Q 027245 181 PKAGLK-IIQSYMEGYRQDWK 200 (226)
Q Consensus 181 p~a~~~-~~~~~~~G~r~~w~ 200 (226)
...... +..+..-|++..|-
T Consensus 178 gD~~~~di~gA~~~G~~~vwi 198 (229)
T COG1011 178 GDSLENDILGARALGMKTVWI 198 (229)
T ss_pred CCChhhhhHHHHhcCcEEEEE
Confidence 333333 35666667776664
No 368
>PF12098 DUF3574: Protein of unknown function (DUF3574); InterPro: IPR021957 This family of proteins is functionally uncharacterised. This protein is found in bacteria and viruses. Proteins in this family are typically between 144 to 163 amino acids in length. This protein has a conserved TPRF sequence motif.
Probab=24.18 E-value=3e+02 Score=21.18 Aligned_cols=57 Identities=14% Similarity=0.140 Sum_probs=35.5
Q ss_pred CcCCC-cEEecCCCCeEeC--CCccC-CCeEEEEEecCCCChhHHHHHHHHHHhHHH-HHHcCC
Q 027245 73 NLLDT-VKVYDVNGNAIPI--SDLWK-DRKAVVAFARHFGCVLCRKRADYLAAKKDV-MDASGV 131 (226)
Q Consensus 73 ~~apd-f~L~D~~G~~v~L--sdl~~-~~~vVVvF~R~~~Cp~C~~el~~L~~~~~~-l~~~Gv 131 (226)
-..|+ +++.|..|+-..- ..+.+ ..++|++.+. ..|.-...+.++++.|.+ |.+..|
T Consensus 32 PRFpdGlTv~Da~GqW~~~~~g~~~rE~Skvv~i~~~--~~~~~~~~i~~Ir~~Yk~rF~QeSV 93 (104)
T PF12098_consen 32 PRFPDGLTVLDAYGQWRDRATGRLIRERSKVVIIVHP--DTPAAEARIEAIREAYKQRFQQESV 93 (104)
T ss_pred cCCCCCceEEeccceEecCCCCcEeecccEEEEEEeC--CChHHHHHHHHHHHHHHHHhccceE
Confidence 34555 8999999998772 22222 2366666654 356667788888886654 555443
No 369
>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase. One member from Halobacterium is annotated as "molybdenum-binding protein" although no evidence can be found for this classification.
Probab=24.06 E-value=1.7e+02 Score=28.67 Aligned_cols=38 Identities=8% Similarity=0.158 Sum_probs=31.6
Q ss_pred HHHHHhHHHHHHcCCEEEEEeCCCHHHHHHHHHHcCCc
Q 027245 117 DYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFK 154 (226)
Q Consensus 117 ~~L~~~~~~l~~~Gv~lVaIs~~~~~~i~~f~~~~~~p 154 (226)
+...+..+++++.|++++.++.++...++..+++.+++
T Consensus 408 ~~a~e~i~~Lk~~Gi~v~ilSgd~~~~a~~ia~~lgi~ 445 (562)
T TIGR01511 408 PEAKEVIQALKRRGIEPVMLTGDNRKTAKAVAKELGIN 445 (562)
T ss_pred HHHHHHHHHHHHcCCeEEEEcCCCHHHHHHHHHHcCCc
Confidence 44555677788899999999999988999999999986
No 370
>COG4607 CeuA ABC-type enterochelin transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=23.96 E-value=1.8e+02 Score=26.85 Aligned_cols=60 Identities=27% Similarity=0.410 Sum_probs=41.0
Q ss_pred cCcCCCcEEecCCCCeEeCCCccCCCeEEEEEecCCCChhHHHHHHHHHHhHHHHHHcCCEEEEEeCCC--HHHHHHHHH
Q 027245 72 KNLLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGS--VEQARTFSE 149 (226)
Q Consensus 72 g~~apdf~L~D~~G~~v~Lsdl~~~~~vVVvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs~~~--~~~i~~f~~ 149 (226)
-+.+.++++++..|.+. +.. ..+++||+-++ ..+.+++.|+++++++++. +..+++|.+
T Consensus 37 ~a~a~t~Ti~~a~g~~~-vpk--nPekVvv~D~g----------------aLD~ld~lGve~~~v~~~~~~P~yL~~y~~ 97 (320)
T COG4607 37 SAAAATVTVKHALGETV-VPK--NPEKVVVLDLG----------------ALDTLDALGVEVVAVGPGKNLPAYLQKYKD 97 (320)
T ss_pred hccCceEEeeccCCccc-ccC--CCceEEEecch----------------hhhhHHHhCCccccccCCCCccHHHHHhcc
Confidence 45566899999888543 221 13567776643 2567889999999997654 578888877
Q ss_pred H
Q 027245 150 Q 150 (226)
Q Consensus 150 ~ 150 (226)
.
T Consensus 98 d 98 (320)
T COG4607 98 D 98 (320)
T ss_pred C
Confidence 4
No 371
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=23.94 E-value=67 Score=28.03 Aligned_cols=56 Identities=13% Similarity=0.194 Sum_probs=32.9
Q ss_pred EeCCCccCCCeEEEEEecCCCChhHHHHHHHHHHhHHHHHHcCCEEEEEeCCCHHHHHHHHHH
Q 027245 88 IPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQ 150 (226)
Q Consensus 88 v~Lsdl~~~~~vVVvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs~~~~~~i~~f~~~ 150 (226)
-.-.+++++++++|+- .....-..++...+-++..|.+++.++++.++++-++...
T Consensus 115 ~a~~~lf~g~~~il~p-------~~~~~~~~~~~~~~l~~~~Ga~~~~~~~eeHD~~~A~vsh 170 (258)
T PF02153_consen 115 AADADLFEGRNWILCP-------GEDTDPEALELVEELWEALGARVVEMDAEEHDRIMAYVSH 170 (258)
T ss_dssp G-TTTTTTTSEEEEEE-------CTTS-HHHHHHHHHHHHHCT-EEEE--HHHHHHHHHHHTH
T ss_pred hhcccccCCCeEEEeC-------CCCChHHHHHHHHHHHHHCCCEEEEcCHHHHHHHHHHHHH
Confidence 3355677777776653 3322234455555666789999999988887777666654
No 372
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=23.86 E-value=5.9e+02 Score=24.19 Aligned_cols=42 Identities=12% Similarity=0.059 Sum_probs=32.0
Q ss_pred CCeEEEEEecCCCCh-------hHHHHHHHHHHhHHHHHHcCCEEEEEeC
Q 027245 96 DRKAVVAFARHFGCV-------LCRKRADYLAAKKDVMDASGVALVLIGP 138 (226)
Q Consensus 96 ~~~vVVvF~R~~~Cp-------~C~~el~~L~~~~~~l~~~Gv~lVaIs~ 138 (226)
.+++|-+.+| .|.+ .+.+|...+++..+.+.+.|.+|+.|+.
T Consensus 233 ~~~~Vgisvr-~~~~~~~~~~~~~~~Y~~~la~~i~~Li~~g~~Vv~lp~ 281 (426)
T PRK10017 233 QQKTVAITLR-ELAPFDKRLGTTQQAYEKAFAGVVNRIIDEGYQVIALST 281 (426)
T ss_pred cCCEEEEEec-ccccccccccccHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 4567777777 4443 3677888899988888888999998885
No 373
>TIGR01647 ATPase-IIIA_H plasma-membrane proton-efflux P-type ATPase. This model describes the plasma membrane proton efflux P-type ATPase found in plants, fungi, protozoa, slime molds and archaea. The best studied representative is from yeast.
Probab=23.73 E-value=1.5e+02 Score=30.38 Aligned_cols=36 Identities=8% Similarity=0.113 Sum_probs=30.9
Q ss_pred HhHHHHHHcCCEEEEEeCCCHHHHHHHHHHcCCcee
Q 027245 121 AKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKGE 156 (226)
Q Consensus 121 ~~~~~l~~~Gv~lVaIs~~~~~~i~~f~~~~~~pfp 156 (226)
+.-++++++|++++.|+-|++..+++.+++.|+.-+
T Consensus 449 ~aI~~l~~aGI~v~miTGD~~~tA~~IA~~lGI~~~ 484 (755)
T TIGR01647 449 ETIERARHLGVEVKMVTGDHLAIAKETARRLGLGTN 484 (755)
T ss_pred HHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCCCC
Confidence 345677889999999999999999999999998654
No 374
>TIGR00067 glut_race glutamate racemase. The most closely related proteins differing in function are aspartate racemases.
Probab=23.54 E-value=1.9e+02 Score=25.31 Aligned_cols=65 Identities=6% Similarity=0.117 Sum_probs=38.4
Q ss_pred EEEecCCCChhHHHHHHHH----HHhHHHHH-HcCCEEEEEeCCCHH--HHHHHHHHcCCceeEEecCChHH
Q 027245 101 VAFARHFGCVLCRKRADYL----AAKKDVMD-ASGVALVLIGPGSVE--QARTFSEQTKFKGEVYADPNHSS 165 (226)
Q Consensus 101 VvF~R~~~Cp~C~~el~~L----~~~~~~l~-~~Gv~lVaIs~~~~~--~i~~f~~~~~~pfpll~Dp~~~l 165 (226)
++|-=..+.|+-.+.-.++ .+..+.|. +.|+++++|.|.+.. ..++.+++.++|+-=..||.-+-
T Consensus 27 iy~~D~~~~PYG~ks~~~i~~~~~~~~~~L~~~~g~d~ivIaCNTA~a~~~~~l~~~~~iPii~iie~~v~~ 98 (251)
T TIGR00067 27 IYVGDTKRFPYGEKSPEFILEYVLELLTFLKERHNIKLLVVACNTASALALEDLQRNFDFPVVGVIEPAIKA 98 (251)
T ss_pred EEEecCCCCCCCCCCHHHHHHHHHHHHHHHHHhCCCCEEEEeCchHHHHHHHHHHHHCCCCEEeecHHHHHH
Confidence 3333344555543333333 34567888 999999999999875 36667666554433233544433
No 375
>PF00803 3A: 3A/RNA2 movement protein family; InterPro: IPR000603 This entry includes movement proteins from various viruses. The 3A protein is found in Bromoviruses and Cucumoviruses, whose genomes contain 3 RNA segments. The third segment (RNA 3) contains two proteins, the coat protein and the 3A protein. The function of the 3A protein is uncertain, but has been shown to be involved in cell-to-cell movement of the virus []. The entry also includes movement proteins from Dianthoviruses.
Probab=23.04 E-value=60 Score=28.45 Aligned_cols=30 Identities=30% Similarity=0.476 Sum_probs=23.1
Q ss_pred CCCCeEeCCCccCCCeEEEEEecCCCChhHHH
Q 027245 83 VNGNAIPISDLWKDRKAVVAFARHFGCVLCRK 114 (226)
Q Consensus 83 ~~G~~v~Lsdl~~~~~vVVvF~R~~~Cp~C~~ 114 (226)
.+|+.+.+. +.++|.+++|+.+.-||.+..
T Consensus 112 v~~Q~v~l~--l~~gP~lv~F~p~ysiP~~~~ 141 (234)
T PF00803_consen 112 VDGQEVTLS--LSDGPALVAFYPNYSIPLEDN 141 (234)
T ss_pred cCCeEEEEE--CCCCCEEEEEeCCCceecccc
Confidence 445766665 246699999999999998864
No 376
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=22.89 E-value=1.2e+02 Score=20.56 Aligned_cols=54 Identities=13% Similarity=0.011 Sum_probs=29.6
Q ss_pred EecCCCChhHHHHHHHHHHhHHHHHHcCCEEEEEeCCCHHHHHHHHHHcC--CceeEEecCCh
Q 027245 103 FARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTK--FKGEVYADPNH 163 (226)
Q Consensus 103 F~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs~~~~~~i~~f~~~~~--~pfpll~Dp~~ 163 (226)
+|....||.|++-.-.|.+.. ...+++.+... .....|.+.+. -..|++.|.+.
T Consensus 3 Ly~~~~sp~~~~v~~~l~~~g-----l~~~~~~~~~~--~~~~~~~~~~p~~~~vP~l~~~~~ 58 (74)
T cd03058 3 LLGAWASPFVLRVRIALALKG-----VPYEYVEEDLG--NKSELLLASNPVHKKIPVLLHNGK 58 (74)
T ss_pred EEECCCCchHHHHHHHHHHcC-----CCCEEEEeCcc--cCCHHHHHhCCCCCCCCEEEECCE
Confidence 455678999998666555432 22344444332 22234555544 25777877543
No 377
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=22.71 E-value=4.6e+02 Score=24.53 Aligned_cols=70 Identities=19% Similarity=0.255 Sum_probs=41.8
Q ss_pred CCeEEEEEecCCCChhHHHHHHHHHHhHHHHHHcCCEEEEEeCCC-----HHHHHHHHHHcCCcee---EEecCChHHHH
Q 027245 96 DRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGS-----VEQARTFSEQTKFKGE---VYADPNHSSYE 167 (226)
Q Consensus 96 ~~~vVVvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs~~~-----~~~i~~f~~~~~~pfp---ll~Dp~~~ly~ 167 (226)
++|.|+.|+-=-+-.--. .+.++...|++.|-.|+...+|+ .++++.|.++.+.++- -=+||..-+|.
T Consensus 137 ~~p~Vil~vGVNG~GKTT----TIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafD 212 (340)
T COG0552 137 KKPFVILFVGVNGVGKTT----TIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFD 212 (340)
T ss_pred CCcEEEEEEecCCCchHh----HHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHH
Confidence 346666666544433322 34555556667777777777776 3677778887776542 23466666666
Q ss_pred Hc
Q 027245 168 AL 169 (226)
Q Consensus 168 al 169 (226)
+.
T Consensus 213 Ai 214 (340)
T COG0552 213 AI 214 (340)
T ss_pred HH
Confidence 53
No 378
>PRK13738 conjugal transfer pilus assembly protein TraW; Provisional
Probab=22.68 E-value=1.3e+02 Score=25.99 Aligned_cols=58 Identities=9% Similarity=0.141 Sum_probs=38.1
Q ss_pred HHHHHHHHHhHHHHHHcCCEEEEEeCCCHHHHHHHHHHcCCceeEEecCChHHHHHcCCcccccee
Q 027245 113 RKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKGEVYADPNHSSYEALSFVSGVLVT 178 (226)
Q Consensus 113 ~~el~~L~~~~~~l~~~Gv~lVaIs~~~~~~i~~f~~~~~~pfpll~Dp~~~ly~alGv~~~~~~t 178 (226)
.+++....+.++. ...+++|.++-+-.+..++ +.-++|.|.++.+-+.||+...+...
T Consensus 131 ~~Qv~wak~~~~~--~~~~k~ILv~Gs~~~~~~~------l~~~vYfdQ~G~Lt~rF~I~~VPAvV 188 (209)
T PRK13738 131 PAQVAWMKRQTPP--TLESKIILVQGSIPEMSKA------LDSRIYFDQNGVLCQRFGIDQVPARV 188 (209)
T ss_pred HHHHHHHHHhhhc--cCCceEEEECCCHHHHHHH------hCCceEEcCcchHHHhcCCeeeceEE
Confidence 4455555443331 1267788777444343333 56689999999999999999876654
No 379
>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. Note that SP|P53981 from S. cerevisiae, a member of this family, is annotated as a "probable membrane protein" due to a predicted transmembrane helix. The region in question contains the second of the three conserved HAD superfamily catalytic motifs and thus, considering the fold of the HAD catalytic domain, is unlikely to be a transmembrane region in fact.
Probab=22.66 E-value=1.5e+02 Score=23.33 Aligned_cols=36 Identities=14% Similarity=0.133 Sum_probs=27.5
Q ss_pred HHHhHHHHHHcCCEEEEEeCCCHHHHHHHHHHcCCc
Q 027245 119 LAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFK 154 (226)
Q Consensus 119 L~~~~~~l~~~Gv~lVaIs~~~~~~i~~f~~~~~~p 154 (226)
+.+..+.+++.|+.+++++.+....++...+..++.
T Consensus 77 ~~~ll~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~ 112 (188)
T TIGR01489 77 FKEFIAFIKEHGIDFIVISDGNDFFIDPVLEGIGEK 112 (188)
T ss_pred HHHHHHHHHHcCCcEEEEeCCcHHHHHHHHHHcCCh
Confidence 334456677889999999988888888888887764
No 380
>PF08285 DPM3: Dolichol-phosphate mannosyltransferase subunit 3 (DPM3); InterPro: IPR013174 This family corresponds to subunit 3 of dolichol-phosphate mannosyltransferase, an enzyme which generates mannosyl donors for glycosylphosphatidylinositols, N-glycan and protein O- and C-mannosylation. DPM3 is an integral membrane protein and plays a role in stabilising the dolichol-phosphate mannosyl transferase complex [].
Probab=22.65 E-value=88 Score=23.49 Aligned_cols=27 Identities=19% Similarity=0.245 Sum_probs=19.6
Q ss_pred CCChhHHHHH-HHHHHhHHHHHHcCCEE
Q 027245 107 FGCVLCRKRA-DYLAAKKDVMDASGVAL 133 (226)
Q Consensus 107 ~~Cp~C~~el-~~L~~~~~~l~~~Gv~l 133 (226)
-.||-.-+|+ .++.+.+++++++|+++
T Consensus 64 nDcpeA~~eL~~eI~eAK~dLr~kGv~~ 91 (91)
T PF08285_consen 64 NDCPEAAKELQKEIKEAKADLRKKGVDV 91 (91)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 3577666665 56677888999999864
No 381
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.
Probab=22.56 E-value=1.5e+02 Score=23.64 Aligned_cols=33 Identities=9% Similarity=0.057 Sum_probs=28.1
Q ss_pred hHHHHHHcCCEEEEEeCCCHHHHHHHHHHcCCc
Q 027245 122 KKDVMDASGVALVLIGPGSVEQARTFSEQTKFK 154 (226)
Q Consensus 122 ~~~~l~~~Gv~lVaIs~~~~~~i~~f~~~~~~p 154 (226)
..++|++.|+.+..++......++...+++++.
T Consensus 36 ~i~~Lk~~G~~i~IvTn~~~~~~~~~l~~~gi~ 68 (154)
T TIGR01670 36 GIRCALKSGIEVAIITGRKAKLVEDRCKTLGIT 68 (154)
T ss_pred HHHHHHHCCCEEEEEECCCCHHHHHHHHHcCCC
Confidence 466777899999999999888888899998876
No 382
>cd03421 SirA_like_N SirA_like_N, a protein of unknown function with an N-terminal SirA-like domain. The SirA, YedF, YeeD protein family is present in bacteria as well as archaea. SirA (also known as UvrY, and YhhP) belongs to a family of a two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=22.50 E-value=2e+02 Score=19.39 Aligned_cols=52 Identities=15% Similarity=0.204 Sum_probs=30.3
Q ss_pred EecCCCChhHHHHHHHHHHhHHHHHHcCCEEEEEeCCC--HHHHHHHHHHcCCceeEEe
Q 027245 103 FARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGS--VEQARTFSEQTKFKGEVYA 159 (226)
Q Consensus 103 F~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs~~~--~~~i~~f~~~~~~pfpll~ 159 (226)
..|+.-||.-.-.+ .+.. +++ .|-.+.++.-++ .+.+..|+++.|+.+.+-.
T Consensus 3 D~rG~~CP~P~l~~---k~al-~~~-~g~~l~v~~d~~~s~~~i~~~~~~~G~~~~~~~ 56 (67)
T cd03421 3 DARGLACPQPVIKT---KKAL-ELE-AGGEIEVLVDNEVAKENVSRFAESRGYEVSVEE 56 (67)
T ss_pred ccCCCCCCHHHHHH---HHHH-hcC-CCCEEEEEEcChhHHHHHHHHHHHcCCEEEEEe
Confidence 45778888753222 2222 333 343444444433 3689999999999885443
No 383
>TIGR01497 kdpB K+-transporting ATPase, B subunit. One sequence is apparently mis-annotated in the primary literature, but properly annotated by TIGR.
Probab=22.37 E-value=1.7e+02 Score=29.82 Aligned_cols=19 Identities=16% Similarity=0.209 Sum_probs=8.5
Q ss_pred HHHhHHHHHHcCCEEEEEe
Q 027245 119 LAAKKDVMDASGVALVLIG 137 (226)
Q Consensus 119 L~~~~~~l~~~Gv~lVaIs 137 (226)
+.+..+++.+.|-++++|.
T Consensus 414 ~~~~~~~~a~~G~r~l~va 432 (675)
T TIGR01497 414 LDQAVDQVARQGGTPLVVC 432 (675)
T ss_pred HHHHHHHHHhCCCeEEEEE
Confidence 3444444444554444443
No 384
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=22.06 E-value=1.6e+02 Score=25.96 Aligned_cols=62 Identities=6% Similarity=0.030 Sum_probs=40.6
Q ss_pred CCeEEEEEecCCCChhHHHHHHHHHHhHHHHHHcCCEEEEEeCCCHHHHHHHHHHcCCceeEEe
Q 027245 96 DRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKGEVYA 159 (226)
Q Consensus 96 ~~~vVVvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs~~~~~~i~~f~~~~~~pfpll~ 159 (226)
.++.+|+.|++.||..|..--.-+....+.+ .+++.+-+..+...++..-.+-...|+-+..
T Consensus 16 ~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~--~~~~~~k~~a~~~~eis~~~~v~~vp~~~~~ 77 (227)
T KOG0911|consen 16 KGKLLVLHFWAIWAVVQKQMDQVFDHLAEYF--KNAQFLKLEAEEFPEISNLIAVEAVPYFVFF 77 (227)
T ss_pred ccchhhhhhhhhhhhhhhhHHHHHHHHHHhh--hhheeeeehhhhhhHHHHHHHHhcCceeeee
Confidence 3467888899999999997666666666655 5667776666665555444444455554433
No 385
>COG5418 Predicted secreted protein [Function unknown]
Probab=22.01 E-value=1.2e+02 Score=25.05 Aligned_cols=59 Identities=15% Similarity=0.156 Sum_probs=40.9
Q ss_pred cCcCCCcEEecCCCCeEeCCCccCCCeEEEEEecCCCChhHHHHHHHHHHhHHHHHHcCCEEEEEeCCC
Q 027245 72 KNLLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGS 140 (226)
Q Consensus 72 g~~apdf~L~D~~G~~v~Lsdl~~~~~vVVvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs~~~ 140 (226)
.-+-|+|.+.-.+-...+-..+ +++ ..--+|++-+.-+.+..++.+..|+.++.|+...
T Consensus 49 qlPCPE~~yLg~~R~~~tke~~--d~~--------~yRr~c~ki~~pi~~~l~e~k~d~~kii~IGV~~ 107 (164)
T COG5418 49 QLPCPEFEYLGWPRPPMTKEVF--DHP--------GYRRVCRKIADPIGRVLEEEKPDGIKIIFIGVKG 107 (164)
T ss_pred eccCchHHhhCCCCCCcCHHHh--cch--------hHHHHHHHHHHHHHHHHHHhCcCCceEEEEecCC
Confidence 3455677776655555444433 221 1224799999999999999999999999998754
No 386
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=21.91 E-value=1.1e+02 Score=22.86 Aligned_cols=46 Identities=13% Similarity=0.004 Sum_probs=29.9
Q ss_pred eEEEEEecCCCChhHHHHHHHHHHhHHHHHHcCCEEEEEeCCCHHHHHHHHH
Q 027245 98 KAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSE 149 (226)
Q Consensus 98 ~vVVvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs~~~~~~i~~f~~ 149 (226)
.-+++++-..+. -+++.+..+..++.|+.+|+|.......+.++++
T Consensus 47 ~d~~I~iS~sG~------t~e~~~~~~~a~~~g~~vi~iT~~~~s~la~~ad 92 (126)
T cd05008 47 DTLVIAISQSGE------TADTLAALRLAKEKGAKTVAITNVVGSTLAREAD 92 (126)
T ss_pred CcEEEEEeCCcC------CHHHHHHHHHHHHcCCeEEEEECCCCChHHHhCC
Confidence 344555544443 3456666677778999999999876666666543
No 387
>PRK00865 glutamate racemase; Provisional
Probab=21.83 E-value=3.1e+02 Score=23.95 Aligned_cols=51 Identities=10% Similarity=0.039 Sum_probs=34.3
Q ss_pred HHHHHhHHHHHHcCCEEEEEeCCCHHHHHHH-HHHcCCceeEEecCChHHHHH
Q 027245 117 DYLAAKKDVMDASGVALVLIGPGSVEQARTF-SEQTKFKGEVYADPNHSSYEA 168 (226)
Q Consensus 117 ~~L~~~~~~l~~~Gv~lVaIs~~~~~~i~~f-~~~~~~pfpll~Dp~~~ly~a 168 (226)
..+.+..+.+.+.|++.|+.+|..-..+... .+..+.+.++ .||...+.+.
T Consensus 164 ~~l~~~l~~l~~~g~d~iILGCTh~p~l~~~i~~~~~~~v~v-IDp~~~~a~~ 215 (261)
T PRK00865 164 EVLREYLAPLLAAGIDTLVLGCTHYPLLKPEIQQVLGEGVTL-IDSGEAIARR 215 (261)
T ss_pred HHHHHHHHHHhcCCCCEEEECCcCHHHHHHHHHHHcCCCCEE-ECCHHHHHHH
Confidence 3455556667778999999999997666544 4444444555 5998766544
No 388
>TIGR03436 acidobact_VWFA VWFA-related Acidobacterial domain. Members of this family are bacterial domains that include a region related to the von Willebrand factor type A (VWFA) domain (pfam00092). These domains are restricted to, and have undergone a large paralogous family expansion in, the Acidobacteria, including Solibacter usitatus and Acidobacterium capsulatum ATCC 51196.
Probab=21.82 E-value=3.6e+02 Score=23.57 Aligned_cols=55 Identities=22% Similarity=0.198 Sum_probs=33.9
Q ss_pred CCeEEEEEecCCCChhHHHHHHHHHHhHHHHHHcCCEEEEEeCC----------------CHHHHHHHHHHcCCc
Q 027245 96 DRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPG----------------SVEQARTFSEQTKFK 154 (226)
Q Consensus 96 ~~~vVVvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs~~----------------~~~~i~~f~~~~~~p 154 (226)
++++||++=-+..- +. ...+.+..+.+.+.++.|.+|+.+ +.+.++++++.+|=.
T Consensus 164 ~rk~iIllTDG~~~--~~--~~~~~~~~~~~~~~~v~vy~I~~~~~~~~~~~~~~~~~~~~~~~L~~iA~~TGG~ 234 (296)
T TIGR03436 164 GRKALIVISDGGDN--RS--RDTLERAIDAAQRADVAIYSIDARGLRAPDLGAGAKAGLGGPEALERLAEETGGR 234 (296)
T ss_pred CCeEEEEEecCCCc--ch--HHHHHHHHHHHHHcCCEEEEeccCccccCCcccccccCCCcHHHHHHHHHHhCCe
Confidence 35565555434321 11 224555556667889999999875 245778888887754
No 389
>TIGR02949 anti_SigH_actin anti-sigma factor, TIGR02949 family. This group of anti-sigma factors are associated in an apparent operon with a family of sigma-70 family sigma factors (TIGR02947). They and appear by homology, tree building, bidirectional best hits and one-to-a-genome distribution, to represent a conserved family. This family is restricted to the Actinobacteria.
Probab=21.77 E-value=1e+02 Score=22.47 Aligned_cols=23 Identities=17% Similarity=0.267 Sum_probs=17.4
Q ss_pred CCChhHHHHHHHHHHhHHHHHHc
Q 027245 107 FGCVLCRKRADYLAAKKDVMDAS 129 (226)
Q Consensus 107 ~~Cp~C~~el~~L~~~~~~l~~~ 129 (226)
..||.|+.++..++.....+...
T Consensus 37 ~~C~~C~~e~~~~~~~~~~L~~~ 59 (84)
T TIGR02949 37 EACPECLEEYGLEQAVKKLLKRC 59 (84)
T ss_pred HhCHHHHHHHHHHHHHHHHHHHh
Confidence 47999999997766666666543
No 390
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=21.66 E-value=91 Score=23.42 Aligned_cols=33 Identities=15% Similarity=0.154 Sum_probs=24.1
Q ss_pred HHHHHHhHHHHHHcCCEEEEEeCCCHHHHHHHH
Q 027245 116 ADYLAAKKDVMDASGVALVLIGPGSVEQARTFS 148 (226)
Q Consensus 116 l~~L~~~~~~l~~~Gv~lVaIs~~~~~~i~~f~ 148 (226)
-+++.+..+..++.|+.+|+|.......+.+++
T Consensus 60 t~~~~~~~~~a~~~g~~vi~iT~~~~s~la~~a 92 (128)
T cd05014 60 TDELLNLLPHLKRRGAPIIAITGNPNSTLAKLS 92 (128)
T ss_pred CHHHHHHHHHHHHCCCeEEEEeCCCCCchhhhC
Confidence 345555566667889999999998776676653
No 391
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=21.62 E-value=2.2e+02 Score=22.82 Aligned_cols=56 Identities=5% Similarity=-0.078 Sum_probs=32.9
Q ss_pred EeCCCccCCCeEEEEEecCC--CChhHHHHHHHHHHhHHHHHHcCCEEEEEeCCCHHH
Q 027245 88 IPISDLWKDRKAVVAFARHF--GCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQ 143 (226)
Q Consensus 88 v~Lsdl~~~~~vVVvF~R~~--~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs~~~~~~ 143 (226)
-++.++....+..|+|+++. -+|-+..-+--|.++.+++.+..++++-|..|....
T Consensus 25 ~~~~~~~~~~~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD~~~~ 82 (132)
T PRK11509 25 SRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSEA 82 (132)
T ss_pred ccHHHHHhCCCcEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEECCCCHH
Confidence 45666665666777777653 445555555555555555533336777777765433
No 392
>COG1636 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.47 E-value=1.5e+02 Score=25.61 Aligned_cols=44 Identities=18% Similarity=0.303 Sum_probs=30.8
Q ss_pred CCCChhHHHHHHHHHHhHHHHHHcCCEEEEEeCCC-----------HHHHHHHHHHcCCce
Q 027245 106 HFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGS-----------VEQARTFSEQTKFKG 155 (226)
Q Consensus 106 ~~~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs~~~-----------~~~i~~f~~~~~~pf 155 (226)
|..|.+|.-++- +.+.+.|+++++--.++ .+..+.|+++++++|
T Consensus 9 H~CCAPcs~y~l------e~l~~~~~~i~~yFYNPNIhP~~EY~~R~~e~~~f~~~~~i~~ 63 (204)
T COG1636 9 HSCCAPCSGYVL------EKLRDSGIKITIYFYNPNIHPLSEYELRKEEVKRFAEKFGINF 63 (204)
T ss_pred EeecCCCcHHHH------HHHHhcCcceEEEEeCCCCCchHHHHHHHHHHHHHHHHcCCee
Confidence 789999987653 34445577776665543 246788999999876
No 393
>TIGR03333 salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase. Members of this family are the methionine salvage enzyme MnxX, a member of the HAD-superfamily hydrolases, subfamily IB (see TIGR01488). Members are found in Bacillus subtilis and related species, paired with MtnW (TIGR03332). In most species that recycle methionine from methylthioadenosine, the single protein MtnC replaces the MtnW/MtnX pair. In B. subtilis, mtnX was first known as ykrX.
Probab=21.40 E-value=2.2e+02 Score=23.63 Aligned_cols=35 Identities=11% Similarity=0.065 Sum_probs=26.8
Q ss_pred HHHHhHHHHHHcCCEEEEEeCCCHHHHHHHHHHcC
Q 027245 118 YLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTK 152 (226)
Q Consensus 118 ~L~~~~~~l~~~Gv~lVaIs~~~~~~i~~f~~~~~ 152 (226)
.+.+..+.+++.|+.+.+|+.+....++.+.+...
T Consensus 74 g~~e~l~~l~~~g~~~~IvS~~~~~~i~~il~~~~ 108 (214)
T TIGR03333 74 GFREFVAFINEHGIPFYVISGGMDFFVYPLLEGIV 108 (214)
T ss_pred cHHHHHHHHHHCCCeEEEECCCcHHHHHHHHHhhC
Confidence 33445667778899999999998888888777764
No 394
>cd01829 SGNH_hydrolase_peri2 SGNH_peri2; putative periplasmic member of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=21.37 E-value=3.6e+02 Score=21.52 Aligned_cols=25 Identities=20% Similarity=0.337 Sum_probs=18.7
Q ss_pred HHHHHHHHhHHHHHHcCCEEEEEeC
Q 027245 114 KRADYLAAKKDVMDASGVALVLIGP 138 (226)
Q Consensus 114 ~el~~L~~~~~~l~~~Gv~lVaIs~ 138 (226)
.+...|.+..+++++.+++|+.++.
T Consensus 92 ~~~~~l~~lv~~~~~~~~~vili~~ 116 (200)
T cd01829 92 EYRQRIDELLNVARAKGVPVIWVGL 116 (200)
T ss_pred HHHHHHHHHHHHHHhCCCcEEEEcC
Confidence 4456666677777788999999975
No 395
>TIGR02471 sucr_syn_bact_C sucrose phosphate synthase, sucrose phosphatase-like domain, bacterial. Sucrose phosphate synthase (SPS) and sucrose phosphate phosphatase (SPP) are the last two enzymes of sucrose biosynthesis. In cyanobacteria and plants, the C-terminal region of most or all versions of SPS has a domain homologous to the known SPP. This domain may serve a binding or regulatory rather than catalytic function. Sequences in this family are bacterial C-terminal regions found in all but two of the putative bacterial sucrose phosphate synthases described by TIGR02472.
Probab=21.30 E-value=1.9e+02 Score=24.33 Aligned_cols=48 Identities=13% Similarity=0.057 Sum_probs=34.7
Q ss_pred HHHHHhHHHHHHcCCEEEEEeCCCHHHHHHHHHHcCCcee--EEecCChHH
Q 027245 117 DYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKGE--VYADPNHSS 165 (226)
Q Consensus 117 ~~L~~~~~~l~~~Gv~lVaIs~~~~~~i~~f~~~~~~pfp--ll~Dp~~~l 165 (226)
..+.+..+ ..++|+.++.++--+.+.++.+.++.+++.| ++.+....+
T Consensus 18 ~~~~~~~~-~~~~gi~~viaTGR~~~~v~~~~~~l~l~~~~~~I~~nGa~i 67 (236)
T TIGR02471 18 ASFVELLR-GSGDAVGFGIATGRSVESAKSRYAKLNLPSPDVLIARVGTEI 67 (236)
T ss_pred HHHHHHHH-hcCCCceEEEEeCCCHHHHHHHHHhCCCCCCCEEEECCCceE
Confidence 33444444 4778999888888888999999999887655 666655544
No 396
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=21.28 E-value=2.1e+02 Score=23.70 Aligned_cols=13 Identities=23% Similarity=0.424 Sum_probs=5.9
Q ss_pred EEecCCCCeEeCC
Q 027245 79 KVYDVNGNAIPIS 91 (226)
Q Consensus 79 ~L~D~~G~~v~Ls 91 (226)
.+.|..|+.+.|-
T Consensus 35 ~v~D~~g~~v~ly 47 (169)
T PF12689_consen 35 VVVDSRGEEVSLY 47 (169)
T ss_dssp -EEETT--EE---
T ss_pred EEEeCCCCEEEeC
Confidence 7888888888875
No 397
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=21.19 E-value=2.8e+02 Score=23.75 Aligned_cols=47 Identities=4% Similarity=0.005 Sum_probs=34.2
Q ss_pred HHhHHHHHHcCCEEEEEeCCCHHHHHHHHHHcCCceeEEecCChHHH
Q 027245 120 AAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKGEVYADPNHSSY 166 (226)
Q Consensus 120 ~~~~~~l~~~Gv~lVaIs~~~~~~i~~f~~~~~~pfpll~Dp~~~ly 166 (226)
.+...+++++|+.++..+-=+...++.+.++.+++.++++.....++
T Consensus 25 ~~ai~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~~~~~I~~NGa~I~ 71 (272)
T PRK15126 25 LSTLARLRERDITLTFATGRHVLEMQHILGALSLDAYLITGNGTRVH 71 (272)
T ss_pred HHHHHHHHHCCCEEEEECCCCHHHHHHHHHHcCCCCcEEecCCcEEE
Confidence 34455567799998888777788889999998887666655444444
No 398
>PRK05370 argininosuccinate synthase; Validated
Probab=21.13 E-value=2.7e+02 Score=26.97 Aligned_cols=71 Identities=7% Similarity=-0.050 Sum_probs=48.9
Q ss_pred eCCCccCCCeEEEEEecCCCChhHHHHHHHHHHhHHHHHHcCCEEEEEeCC--C-----HHHHHHHHHHcCCceeEEecC
Q 027245 89 PISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPG--S-----VEQARTFSEQTKFKGEVYADP 161 (226)
Q Consensus 89 ~Lsdl~~~~~vVVvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs~~--~-----~~~i~~f~~~~~~pfpll~Dp 161 (226)
-|++|.+++++||.|=-+-....|...+. +.|..||++..| . .+.+++=+...|..=-.+.|-
T Consensus 4 ~~~~l~~~~KVvLAYSGGLDTSv~l~wL~----------e~~~eVia~~aDvGQ~~~ed~~~i~~kA~~~GA~~~~viDl 73 (447)
T PRK05370 4 ILKHLPVGQRVGIAFSGGLDTSAALLWMR----------QKGAVPYAYTANLGQPDEDDYDAIPRRAMEYGAENARLIDC 73 (447)
T ss_pred hhhhCCCCCEEEEEecCCchHHHHHHHHH----------hcCCeEEEEEEECCCCCccchHHHHHHHHHhCCCEEEEecc
Confidence 36777778899999888888888876443 336667666543 2 246666667777765577888
Q ss_pred ChHHHHHc
Q 027245 162 NHSSYEAL 169 (226)
Q Consensus 162 ~~~ly~al 169 (226)
...+++.|
T Consensus 74 r~eF~e~~ 81 (447)
T PRK05370 74 RAQLVAEG 81 (447)
T ss_pred HHHHHHHH
Confidence 77776554
No 399
>TIGR01261 hisB_Nterm histidinol-phosphatase. This model describes histidinol phosphatase. All known examples in the scope of this model are bifunctional proteins with a histidinol phosphatase domain followed by an imidazoleglycerol-phosphate dehydratase domain. These enzymatic domains catalyze the ninth and seventh steps, respectively, of histidine biosynthesis.
Probab=20.80 E-value=2.1e+02 Score=23.09 Aligned_cols=42 Identities=7% Similarity=-0.002 Sum_probs=32.2
Q ss_pred HHHHHhHHHHHHcCCEEEEEeCCC---------------HHHHHHHHHHcCCcee-EE
Q 027245 117 DYLAAKKDVMDASGVALVLIGPGS---------------VEQARTFSEQTKFKGE-VY 158 (226)
Q Consensus 117 ~~L~~~~~~l~~~Gv~lVaIs~~~---------------~~~i~~f~~~~~~pfp-ll 158 (226)
+...+..++|+++|..+++|+..+ ...+.+..+..++.|. ++
T Consensus 32 pgv~e~L~~L~~~g~~l~IvSN~~g~~~~~~~~~~~~~~~~~~~~~l~~~gl~fd~ii 89 (161)
T TIGR01261 32 KGVIPALLKLKKAGYKFVMVTNQDGLGTPSFPQADFDGPHNLMLQIFRSQGIIFDDVL 89 (161)
T ss_pred CCHHHHHHHHHHCCCeEEEEeCCccccCCcCCHHHHHHHHHHHHHHHHHCCCceeEEE
Confidence 556667788889999999998853 3467778888899885 54
No 400
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=20.76 E-value=2.9e+02 Score=26.81 Aligned_cols=64 Identities=13% Similarity=0.045 Sum_probs=45.7
Q ss_pred cCCCcEEecCCCCeEeCCCccCCCeEEEEEecCCCChhHHHHHHHHHHhHHHHHHcCCEEEEEeCCC
Q 027245 74 LLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGS 140 (226)
Q Consensus 74 ~apdf~L~D~~G~~v~Lsdl~~~~~vVVvF~R~~~Cp~C~~el~~L~~~~~~l~~~Gv~lVaIs~~~ 140 (226)
.+-.+.|.=.+|+.++|.+|.+...+||+ -+. -.+|.+-+...+.++++|.+.||-||-|..+.
T Consensus 275 ~L~rL~v~l~~~~~v~l~~LRg~~RvvIv--AG~-~e~v~~al~~ae~~r~~L~~r~VlvVPv~~~~ 338 (453)
T PLN03098 275 TLSRLPVRLSTNRIVELVQLRDITRPVIL--AGT-KESVTLAMQKAERYRTELLKRGVLLIPVVWGE 338 (453)
T ss_pred hhccceEeccCCCEEeHHHhcCcceEEEE--ECC-HHHHHHHHHHhHHHHHHHHHcCcEEEEEecCC
Confidence 33444444345789999998654444443 233 37788888899999999999999999998763
No 401
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=20.73 E-value=3.2e+02 Score=23.40 Aligned_cols=33 Identities=18% Similarity=0.259 Sum_probs=21.4
Q ss_pred CCEEEEEeCCCH---HHHHHHHHHcCCceeEEecCC
Q 027245 130 GVALVLIGPGSV---EQARTFSEQTKFKGEVYADPN 162 (226)
Q Consensus 130 Gv~lVaIs~~~~---~~i~~f~~~~~~pfpll~Dp~ 162 (226)
++.+|.+..+++ +.+.+.|++.+.+.-+.-||+
T Consensus 72 ~~~lviaAt~d~~ln~~i~~~a~~~~i~vNv~D~p~ 107 (210)
T COG1648 72 DAFLVIAATDDEELNERIAKAARERRILVNVVDDPE 107 (210)
T ss_pred CceEEEEeCCCHHHHHHHHHHHHHhCCceeccCCcc
Confidence 366777777765 356666677776666666666
No 402
>cd00738 HGTP_anticodon HGTP anticodon binding domain, as found at the C-terminus of histidyl, glycyl, threonyl and prolyl tRNA synthetases, which are classified as a group of class II aminoacyl-tRNA synthetases (aaRS). In aaRSs, the anticodon binding domain is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only. This domain is also found in the accessory subunit of mitochondrial polymerase gamma (Pol gamma b).
Probab=20.60 E-value=3e+02 Score=19.02 Aligned_cols=47 Identities=9% Similarity=0.080 Sum_probs=32.6
Q ss_pred HHHHHHhHHHHHHcCCEEEEEeC-CCHHHHHHHHHHcCCceeEEecCC
Q 027245 116 ADYLAAKKDVMDASGVALVLIGP-GSVEQARTFSEQTKFKGEVYADPN 162 (226)
Q Consensus 116 l~~L~~~~~~l~~~Gv~lVaIs~-~~~~~i~~f~~~~~~pfpll~Dp~ 162 (226)
.....+...++.+.|+.+..-.. .+....-+++++.+++|-++.+.+
T Consensus 17 ~~~a~~~~~~Lr~~g~~v~~~~~~~~~~k~~~~a~~~g~~~~iiig~~ 64 (94)
T cd00738 17 REYAQKLLNALLANGIRVLYDDRERKIGKKFREADLRGVPFAVVVGED 64 (94)
T ss_pred HHHHHHHHHHHHHCCCEEEecCCCcCHhHHHHHHHhCCCCEEEEECCC
Confidence 33334456678888988776443 445666677888899999888764
No 403
>cd01137 PsaA Metal binding protein PsaA. These proteins have been shown to function as initial receptors in ABC transport of Mn2+ and as surface adhesins in some eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=20.47 E-value=1.9e+02 Score=25.69 Aligned_cols=38 Identities=13% Similarity=0.133 Sum_probs=18.3
Q ss_pred HHHHHhHHHHHHcCCEEEEEeCCCH-HHHHHHHHHcCCc
Q 027245 117 DYLAAKKDVMDASGVALVLIGPGSV-EQARTFSEQTKFK 154 (226)
Q Consensus 117 ~~L~~~~~~l~~~Gv~lVaIs~~~~-~~i~~f~~~~~~p 154 (226)
.+|.+..+.+++.++++|.+..... ..++..+++++.+
T Consensus 213 ~~l~~l~~~ik~~~v~~if~e~~~~~~~~~~ia~~~gv~ 251 (287)
T cd01137 213 KQVATLIEQVKKEKVPAVFVESTVNDRLMKQVAKETGAK 251 (287)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHhCCc
Confidence 3444444455555555555544432 3344555555544
No 404
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=20.41 E-value=3.2e+02 Score=21.28 Aligned_cols=37 Identities=11% Similarity=0.208 Sum_probs=25.8
Q ss_pred HHHHHhHHHHHHcCCEEEEEeCCCHHHHHHHHHHcCCc
Q 027245 117 DYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFK 154 (226)
Q Consensus 117 ~~L~~~~~~l~~~Gv~lVaIs~~~~~~i~~f~~~~~~p 154 (226)
+.+.+..+.+++.|+.+.+++...... ....++.++.
T Consensus 88 ~g~~~~l~~l~~~g~~~~i~Tn~~~~~-~~~~~~~~l~ 124 (183)
T TIGR01509 88 PGVEPLLEALRARGKKLALLTNSPRDH-AVLVQELGLR 124 (183)
T ss_pred cCHHHHHHHHHHCCCeEEEEeCCchHH-HHHHHhcCCH
Confidence 445556677778899999998888766 5555546653
No 405
>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB. The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing sequences whose relationship to the other groups is unclear.
Probab=20.39 E-value=3.1e+02 Score=22.24 Aligned_cols=48 Identities=15% Similarity=0.199 Sum_probs=33.4
Q ss_pred HHHHHhHHHHHHcCCEEEEEeCCCHHHHHHHHHHcCCceeEEecCChHHH
Q 027245 117 DYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKGEVYADPNHSSY 166 (226)
Q Consensus 117 ~~L~~~~~~l~~~Gv~lVaIs~~~~~~i~~f~~~~~~pfpll~Dp~~~ly 166 (226)
+.+.+..+++.+.|+.++.++--+...++.+.+. ++.+++++....++
T Consensus 20 ~~~~~~l~~l~~~g~~~~i~TGR~~~~~~~~~~~--~~~~~i~~nGa~i~ 67 (204)
T TIGR01484 20 PETIEALERLREAGVKVVLVTGRSLAEIKELLKQ--LPLPLIAENGALIF 67 (204)
T ss_pred HHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHh--CCCCEEECCCcEEE
Confidence 4555667778888988888888888888888876 44456655544443
No 406
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=20.25 E-value=4.2e+02 Score=20.61 Aligned_cols=67 Identities=13% Similarity=0.155 Sum_probs=39.8
Q ss_pred CeEEEEEecCC--CChhHH-HHHHHHHHhHHHHHHcCCEEEEEeCCCHHHHHHHHHH--cCCceeEEecCCh
Q 027245 97 RKAVVAFARHF--GCVLCR-KRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQ--TKFKGEVYADPNH 163 (226)
Q Consensus 97 ~~vVVvF~R~~--~Cp~C~-~el~~L~~~~~~l~~~Gv~lVaIs~~~~~~i~~f~~~--~~~pfpll~Dp~~ 163 (226)
+-++|.|+.+. .-+-++ ++...|.+..++++..++..+.|..+....+.++..- .++|--++.+.+.
T Consensus 21 ~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kgk~i~Fv~vd~~~~~~~~~~fgl~~~~~P~v~i~~~~~ 92 (130)
T cd02983 21 QLCIIAFLPHILDCQASCRNKYLEILKSVAEKFKKKPWGWLWTEAGAQLDLEEALNIGGFGYPAMVAINFRK 92 (130)
T ss_pred CeEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCcccHHHHHHcCCCccCCCEEEEEeccc
Confidence 46899999874 233343 3466677777888877788888888776543333221 1233334555543
No 407
>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase. The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.
Probab=20.16 E-value=2.3e+02 Score=22.93 Aligned_cols=40 Identities=23% Similarity=0.267 Sum_probs=30.4
Q ss_pred HHHHHhHHHHHHcCCEEEEEeCCCH------------HHHHHHHHHcCCcee
Q 027245 117 DYLAAKKDVMDASGVALVLIGPGSV------------EQARTFSEQTKFKGE 156 (226)
Q Consensus 117 ~~L~~~~~~l~~~Gv~lVaIs~~~~------------~~i~~f~~~~~~pfp 156 (226)
+...+..+++++.|+.+.+|+..+. +.++...+.+++++.
T Consensus 45 pgv~e~L~~Lk~~G~~l~I~TN~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~ 96 (166)
T TIGR01664 45 PEIPAKLQELDDEGYKIVIFTNQSGIGRGKLSAESFKNKIEAFLEKLKVPIQ 96 (166)
T ss_pred CCHHHHHHHHHHCCCEEEEEeCCcccccCcccHHHHHHHHHHHHHHcCCCEE
Confidence 4566677888889999999997654 246778888888763
Done!