BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 027247
         (226 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2GHF|A Chain A, Solution Structure Of The Complete Zinc-Finger Region Of
           Human Zinc-Fingers And Homeoboxes 1 (Zhx1)
          Length = 102

 Score = 32.0 bits (71), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 45/96 (46%), Gaps = 16/96 (16%)

Query: 43  VKGEYEYPCPFCS-EDFDLVGLCCHIDEEHP--VEAKSGVCPVCVTRVTMDMVDHITTQH 99
           V+G YE  C +C+ +  DL     H+D EHP  V   S VC  C         + +T ++
Sbjct: 15  VEGGYE--CKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVEC---------NFLTKRY 63

Query: 100 GNISNSWHKLKLHKGNSNSTISSLRKELQNAHFQSL 135
             +S   H LK H G  N  ++ +++  Q    Q++
Sbjct: 64  DALSE--HNLKYHPGEENFKLTMVKRNNQTIFEQTI 97


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.314    0.128    0.381 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,562,918
Number of Sequences: 62578
Number of extensions: 179800
Number of successful extensions: 204
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 202
Number of HSP's gapped (non-prelim): 4
length of query: 226
length of database: 14,973,337
effective HSP length: 95
effective length of query: 131
effective length of database: 9,028,427
effective search space: 1182723937
effective search space used: 1182723937
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 50 (23.9 bits)